Psyllid ID: psy8820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230----
Protein Sequence
QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Secondary Structure (PSIPRED)
ccccccEEEEEEEcEEEEEEEcccccEEEEEEEccccEEEHHHHHHccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEccccEEEEEcccccccEEEEEEEcEEEEEEEcccccccEEEEEEccccEEEEEEccccccEEEEEEEEccEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHHHHccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEEccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccccEEEEEcccHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHcccEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEEEcccccccEEEEEEccccEEEEEHHHcccccEEEEEEEEcEEEEEEcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEcc
Coil and Loop (DISEMBL)
qydrsdstyIVLTGRLRSvktlesgkrkeeaeyskgdLVGLIEMVTSTSRNTTVMAVRDselaklpeglcdhlprspseqeLIHSSKREFMEqlgvkdfsgldirvehipggtclvreevveDNKLIYVIAGSLFitqkssdgsndvhlftafpgdmigglavLTGEASVFTIQSrlpatiawlpqddcstlidADMNVTLKIAHSVLKrmspfvrqfdFALDWVFLEGGQAVY
Flexible Loop (DISEMBL)
qydrsdstyivltgrlrsvktlesgkrkeeaeyskgdlvglIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Low Complexity Region (SEG)
QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Disordered region (IsUnstruct)
********YIVLTGRL********************DLVGLIEMVT*********************************************EQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEG*****
Disordered Region (DISOPRED)
QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS******VHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Disordered Region (DISEMBL)
QYDRSDSTYIVLTGRLRSVKT************SKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Disordered Region (DISPRO)
****SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	234	2.2.26 [Sep-21-2011]
Q6ZV29	1317	Patatin-like phospholipas	yes	N/A	0.807	0.143	0.343	2e-25
Q5RDS0	1365	Neuropathy target esteras	yes	N/A	0.649	0.111	0.393	2e-24
Q8IY17	1366	Neuropathy target esteras	no	N/A	0.649	0.111	0.387	3e-24
Q3TRM4	1355	Neuropathy target esteras	yes	N/A	0.739	0.127	0.345	5e-24
A2AJ88	1352	Patatin-like phospholipas	no	N/A	0.649	0.112	0.374	3e-23
Q5BK26	1349	Patatin-like phospholipas	no	N/A	0.649	0.112	0.361	1e-22
B4M709	1483	Neuropathy target esteras	N/A	N/A	0.722	0.113	0.324	1e-21
B4L535	1488	Neuropathy target esteras	N/A	N/A	0.666	0.104	0.331	8e-21
B4JLX2	1464	Neuropathy target esteras	N/A	N/A	0.243	0.038	0.690	4e-20
Q9U969	1425	Neuropathy target esteras	yes	N/A	0.277	0.045	0.690	6e-20

>sp|Q6ZV29|PLPL7_HUMAN Patatin-like phospholipase domain-containing protein 7 OS=Homo sapiens GN=PNPLA7 PE=2 SV=3

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 109/192 (56%), Gaps = 3/192 (1%)

Query: 45  VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDI 104
           V S SR + ++A   S +++  E   D    S     +  ++K++ +  + ++D S LD 
Sbjct: 414 VASKSRKSVMVAEIPSTVSQHSESHTDETLASRKSDAIFRAAKKDLLTLMKLEDSSLLDG 473

Query: 105 RVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
           RV   H+P GT + R+   +D  +++V++G L + Q+      D  LF   PG+M+G LA
Sbjct: 474 RVALLHVPAGTVVSRQGD-QDASILFVVSGLLHVYQRKIGSQEDTCLFLTRPGEMVGQLA 532

Query: 163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFAL 222
           VLTGE  +FT+++    +   + +     ++     V L +AH+V+KRMS FVRQ DFAL
Sbjct: 533 VLTGEPLIFTVKANRDCSFLSISKAHFYEIMRKQPTVVLGVAHTVVKRMSSFVRQIDFAL 592

Query: 223 DWVFLEGGQAVY 234
           DWV +E G+A+Y
Sbjct: 593 DWVEVEAGRAIY 604

Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q5RDS0|PLPL6_PONAB Neuropathy target esterase OS=Pongo abelii GN=PNPLA6 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 3/155 (1%)

Query: 82  LIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139
           +  ++KRE  + + ++D S L+ RV   H   GT + R+   +D  L +V+ G L + Q 
Sbjct: 495 IFEAAKRELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGD-QDVSLHFVLWGCLHVYQH 553

Query: 140 SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNV 199
             D + DV LF A PG+++G LAVLTGE  +FT++++   T   + + D   ++ A  +V
Sbjct: 554 MIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYEIMRAQPSV 613

Query: 200 TLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
            L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct: 614 VLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 648

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|Q8IY17|PLPL6_HUMAN Neuropathy target esterase OS=Homo sapiens GN=PNPLA6 PE=1 SV=2

 Score =  112 bits (279), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/155 (38%), Positives = 95/155 (61%), Gaps = 3/155 (1%)

Query: 82  LIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139
           +  ++K+E  + + ++D S L+ RV   H   GT + R+   +D  L +V+ G L + Q+
Sbjct: 495 IFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGD-QDVSLHFVLWGCLHVYQR 553

Query: 140 SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNV 199
             D + DV LF A PG+++G LAVLTGE  +FT++++   T   + + D   ++ A  +V
Sbjct: 554 MIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYEIMRAQPSV 613

Query: 200 TLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
            L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct: 614 VLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 648

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|Q3TRM4|PLPL6_MOUSE Neuropathy target esterase OS=Mus musculus GN=Pnpla6 PE=2 SV=2

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/191 (34%), Positives = 105/191 (54%), Gaps = 18/191 (9%)

Query: 61  ELAKLPEGLCDH-----------LPRSPSE----QELIHSSKREFMEQLGVKDFSGLDIR 105
           EL + P G C++            P  P +      +  ++KRE  + + ++D S L+ R
Sbjct: 449 ELREQPAGACEYSYCEDESATGGCPFGPYQGRQTSSIFEAAKRELAKLMRIEDPSLLNSR 508

Query: 106 V--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAV 163
           V   H   GT + R+   +D  L +V+ G L + Q+  D + +V LF A PG+++G LAV
Sbjct: 509 VLLHHAKAGTIIARQGD-QDVSLHFVLWGCLHVYQRMIDKAEEVCLFVAQPGELVGQLAV 567

Query: 164 LTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALD 223
           LTGE  +FT++++   T   + +     ++ A  +V L  AH+V  RMSPFVRQ DFA+D
Sbjct: 568 LTGEPLIFTLRAQRDCTFLRISKSHFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAID 627

Query: 224 WVFLEGGQAVY 234
           W  +E G+A+Y
Sbjct: 628 WTAVEAGRALY 638

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|A2AJ88|PLPL7_MOUSE Patatin-like phospholipase domain-containing protein 7 OS=Mus musculus GN=Pnpla7 PE=1 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 3/155 (1%)

Query: 82  LIHSSKREFMEQLGVKDFSGLDIRVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139
           +  ++ ++ +  + + D S LD RV   H+P GT LV ++  +D  +++V++G L + Q+
Sbjct: 473 IFRAATKDLLTLMKLDDPSLLDGRVAFLHVPAGT-LVSKQGDQDVNILFVVSGMLHVYQQ 531

Query: 140 SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNV 199
             D   D  LF   PG+M+G LAVLTGE  +FTI++    +   + +     ++    +V
Sbjct: 532 KIDSLEDTCLFLTHPGEMVGQLAVLTGEPLMFTIRANRDCSFLSISKAHFYEIMRKRPDV 591

Query: 200 TLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
            L +AH+V+KRMS FVRQ DFALDW+ +E G+A+Y
Sbjct: 592 VLGVAHTVVKRMSSFVRQIDFALDWMEVEAGRAIY 626

Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BK26|PLPL7_RAT Patatin-like phospholipase domain-containing protein 7 OS=Rattus norvegicus GN=Pnpla7 PE=1 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/155 (36%), Positives = 95/155 (61%), Gaps = 3/155 (1%)

Query: 82  LIHSSKREFMEQLGVKDFSGLDIRVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139
           +  ++ ++ +  + + D S LD RV   H+P GT +V ++  +D  +++V++G L + Q+
Sbjct: 470 IFRAATKDLLTLMKLDDPSLLDGRVAFLHVPAGT-IVSKQGDQDVNILFVVSGMLHVYQQ 528

Query: 140 SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNV 199
             D   D  LF   PG+M+G LAVLTGE  +FTI++    +   + +     ++    +V
Sbjct: 529 KIDSLEDTCLFLTHPGEMVGQLAVLTGEPLMFTIRANRDCSFLSISKAHFYEIMRKRPDV 588

Query: 200 TLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
            L +AH+V++RMS FVRQ DFALDW+ +E G+A+Y
Sbjct: 589 VLGVAHTVVRRMSSFVRQIDFALDWMEVEAGRAIY 623

Serine hydrolase, whose specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B4M709|SWS_DROVI Neuropathy target esterase sws OS=Drosophila virilis GN=sws PE=3 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 13/182 (7%)

Query: 66  PEGLCDHLPRSPSEQELIHSSKREFME-QLGVKDFSGLDIR----VEHIPGGTCLVREEV 120
           P G  +  P +  +Q L+ SS  + +  +LG+ +     I     V  +     L+ E  
Sbjct: 428 PNGNANTAPGTSIDQRLVQSSAVDSLRRELGLSEDDAQIIEPFVEVRELEPNVTLITEGN 487

Query: 121 VEDNKLIYVIAGSLFITQKSSDGS--------NDVHLFTAFPGDMIGGLAVLTGEASVFT 172
            ED  + +V+ G+L + Q ++D +        NDV +    PG+++GGLA+LTGEAS +T
Sbjct: 488 AEDVCVWFVMTGTLAVYQSNADATRATKQDSKNDVLIHFVHPGEIVGGLAMLTGEASAYT 547

Query: 173 IQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQA 232
           I++R  + +A++ +     ++     + L + + V++R+SP VRQ D+ALDW+FLE G+A
Sbjct: 548 IRARSNSRVAYIRRAAIYQIMRQRPRIVLDLGNGVVRRLSPLVRQCDYALDWIFLESGRA 607

Query: 233 VY 234
           VY
Sbjct: 608 VY 609

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy. Plays a role in the signaling mechanism between neurons and glia that regulates glia wrapping during development of the adult brain. Essential for membrane lipid homeostasis and cell survival in both neurons and glia of the adult brain.

Drosophila virilis (taxid: 7244)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|B4L535|SWS_DROMO Neuropathy target esterase sws OS=Drosophila mojavensis GN=sws PE=3 SV=1

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 99/169 (58%), Gaps = 13/169 (7%)

Query: 79  EQELIHSSKREFMEQ---LGVKDFSGLD--IRVEHIPGGTCLVREEVVEDNKLIYVIAGS 133
           +Q L+ SS  + + +   L  +D S ++  + V  +     L+ E   ED  + +V+ G+
Sbjct: 443 DQRLVQSSAVDSLRRELGLSEEDTSIIEPFVEVRELEPNVTLITEGNAEDVCIWFVMTGT 502

Query: 134 LFITQKSSDGS--------NDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP 185
           L + Q ++D +        ND+ +    PG+++GGLA+LTGEAS +TI++R  + IA++ 
Sbjct: 503 LAVYQSNADATRAAKQDSKNDMLIHFVHPGEIVGGLAMLTGEASAYTIRARSNSRIAYIR 562

Query: 186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     ++     + L + + V++R+SP VRQ D+ALDW+FLE G+AVY
Sbjct: 563 RAAIYQIMRQRPRIVLDLGNGVVRRLSPLVRQCDYALDWIFLESGRAVY 611

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy. Plays a role in the signaling mechanism between neurons and glia that regulates glia wrapping during development of the adult brain. Essential for membrane lipid homeostasis and cell survival in both neurons and glia of the adult brain.

Drosophila mojavensis (taxid: 7230)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|B4JLX2|SWS_DROGR Neuropathy target esterase sws OS=Drosophila grimshawi GN=sws PE=3 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 59/71 (83%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDS 60
           Q + SDSTYIVL+GR+RSV T  +GK++   EY KGDLVG++EM+T TSR TTVMAVRDS
Sbjct: 612 QDESSDSTYIVLSGRMRSVITQPNGKKEIVGEYGKGDLVGIVEMITETSRTTTVMAVRDS 671

Query: 61  ELAKLPEGLCD 71
           ELAKLPEGL +
Sbjct: 672 ELAKLPEGLFN 682

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy. Plays a role in the signaling mechanism between neurons and glia that regulates glia wrapping during development of the adult brain. Essential for membrane lipid homeostasis and cell survival in both neurons and glia of the adult brain.

Drosophila grimshawi (taxid: 7222)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

>sp|Q9U969|SWS_DROME Neuropathy target esterase sws OS=Drosophila melanogaster GN=sws PE=1 SV=2

 Score = 97.8 bits (242), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 58/71 (81%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDS 60
           Q + SDSTYIVL+GR+RSV T   GK++   EY KGDLVG++EM+T TSR TTVMAVRDS
Sbjct: 635 QDESSDSTYIVLSGRMRSVITHPGGKKEIVGEYGKGDLVGIVEMITETSRTTTVMAVRDS 694

Query: 61  ELAKLPEGLCD 71
           ELAKLPEGL +
Sbjct: 695 ELAKLPEGLFN 705

Phospholipase B that deacylates intracellular phosphatidylcholine (PtdCho), generating glycerophosphocholine (GroPtdCho). This deacylation occurs at both sn-2 and sn-1 positions of PtdCho. Its specific chemical modification by certain organophosphorus (OP) compounds leads to distal axonopathy. Plays a role in the signaling mechanism between neurons and glia that regulates glia wrapping during development of the adult brain. Essential for membrane lipid homeostasis and cell survival in both neurons and glia of the adult brain.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
357603741	785	hypothetical protein KGM_05988 [Danaus p	0.666	0.198	0.430	3e-32
340711463	1332	PREDICTED: neuropathy target esterase sw	0.666	0.117	0.438	4e-32
350416248	1268	PREDICTED: neuropathy target esterase sw	0.666	0.123	0.438	4e-32
350416245	1332	PREDICTED: neuropathy target esterase sw	0.666	0.117	0.438	4e-32
340711465	1363	PREDICTED: neuropathy target esterase sw	0.666	0.114	0.438	4e-32
307205371	1240	Protein Swiss cheese [Harpegnathos salta	0.666	0.125	0.422	1e-31
307188193	1271	Protein Swiss cheese [Camponotus florida	0.619	0.114	0.446	2e-31
270002084	1312	hypothetical protein TcasGA2_TC001035 [T	0.863	0.153	0.361	3e-31
383848584	1376	PREDICTED: neuropathy target esterase sw	0.658	0.111	0.425	4e-31
328777223	1340	PREDICTED: neuropathy target esterase sw	0.666	0.116	0.432	4e-31

>gi|357603741|gb|EHJ63906.1| hypothetical protein KGM_05988 [Danaus plexippus]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGL--DIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFI 136
           EQ LI  +   F+++LG+ +   L  +++V  +P GT +++EE  +D  L+Y+++G+L +
Sbjct: 224 EQALIKIASEAFVKELGLDNDQILKGNVQVRDLPAGTYIMKEESHKDVALVYLLSGALLV 283

Query: 137 TQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDAD 196
           +Q+ ++G  +VH+FTA+PG++ GGLAVLTGE S F+I+++  + I  L +    +++   
Sbjct: 284 SQRVAEGEGEVHMFTAYPGEVEGGLAVLTGEPSFFSIRAKHFSRIGLLSKTTVYSIMRER 343

Query: 197 MNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
            +V L IA++V++R+SPFVRQ DFALDWVFLE G+AVY
Sbjct: 344 PSVVLHIANTVVRRLSPFVRQVDFALDWVFLESGRAVY 381

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711463|ref|XP_003394295.1| PREDICTED: neuropathy target esterase sws-like isoform 1 [Bombus terrestris]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
           E +L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YV++GSL 
Sbjct: 446 EAQLVQMATEAFVRELGLEDDSILKDGKVQIREVPAGTYLMKEESHKDVALVYVVSGSLI 505

Query: 136 ITQKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTL 192
           I+Q+ S+G +   +VH+F+A  G+++GGLAVLTGE S +TI+++  + IA L +     +
Sbjct: 506 ISQRVSEGRDIGQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHSSRIALLSKPTFFAI 565

Query: 193 IDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 566 MREQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 607

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416248|ref|XP_003490887.1| PREDICTED: neuropathy target esterase sws-like isoform 2 [Bombus impatiens]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
           E +L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YV++GSL 
Sbjct: 364 EAQLVQMATEAFVRELGLEDDSILKDGKVQIREVPAGTYLMKEESHKDVALVYVVSGSLI 423

Query: 136 ITQKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTL 192
           I+Q+ S+G +   +VH+F+A  G+++GGLAVLTGE S +TI+++  + IA L +     +
Sbjct: 424 ISQRVSEGRDVGQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHSSRIALLSKPTFFAI 483

Query: 193 IDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 484 MREQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 525

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416245|ref|XP_003490886.1| PREDICTED: neuropathy target esterase sws-like isoform 1 [Bombus impatiens]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
           E +L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YV++GSL 
Sbjct: 446 EAQLVQMATEAFVRELGLEDDSILKDGKVQIREVPAGTYLMKEESHKDVALVYVVSGSLI 505

Query: 136 ITQKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTL 192
           I+Q+ S+G +   +VH+F+A  G+++GGLAVLTGE S +TI+++  + IA L +     +
Sbjct: 506 ISQRVSEGRDVGQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHSSRIALLSKPTFFAI 565

Query: 193 IDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 566 MREQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 607

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711465|ref|XP_003394296.1| PREDICTED: neuropathy target esterase sws-like isoform 2 [Bombus terrestris]

 Score =  144 bits (362), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/162 (43%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
           E +L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YV++GSL 
Sbjct: 459 EAQLVQMATEAFVRELGLEDDSILKDGKVQIREVPAGTYLMKEESHKDVALVYVVSGSLI 518

Query: 136 ITQKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTL 192
           I+Q+ S+G +   +VH+F+A  G+++GGLAVLTGE S +TI+++  + IA L +     +
Sbjct: 519 ISQRVSEGRDIGQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHSSRIALLSKPTFFAI 578

Query: 193 IDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 579 MREQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 620

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205371|gb|EFN83712.1| Protein Swiss cheese [Harpegnathos saltator]

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/161 (42%), Positives = 111/161 (68%), Gaps = 5/161 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD--IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFI 136
           E +L+  +   F+ +LG++D + L   +++  +P GT L++EE  +D  L+YV++GSL +
Sbjct: 355 ESQLVQIATDAFVHELGIEDETVLKDKVQIREVPAGTYLMKEESHKDVALVYVLSGSLIV 414

Query: 137 TQK---SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLI 193
           +Q+   S D   +VH+F+A  G+++GGLAVLTGE S +TI+++ P+ IA + +     ++
Sbjct: 415 SQRVSESRDAYQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHPSRIALISKMTFFAIM 474

Query: 194 DADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
                V L +AH+V++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 475 RDQPTVVLHVAHTVVRRLSPFVRQVDFALDWLFLESGRAVY 515

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188193|gb|EFN73025.1| Protein Swiss cheese [Camponotus floridanus]

 Score =  142 bits (357), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/150 (44%), Positives = 108/150 (72%), Gaps = 5/150 (3%)

Query: 90  FMEQLGVKDFSGLD--IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSN-- 145
           F+ +LG++D + L   +++  +P GT L++EE  +D  L+YV++GSL ++Q+ S+G +  
Sbjct: 381 FVRELGIEDETVLKDKVQIREVPAGTYLMKEESHKDVALVYVLSGSLIVSQRVSEGRDAG 440

Query: 146 -DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIA 204
            +VH+F+A  G+++GGLAVLTGE S +TI+++ P+ IA L +     ++     V L +A
Sbjct: 441 QEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHPSRIALLSKSTFFAIMRDQPTVVLHVA 500

Query: 205 HSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           H+V++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 501 HTVVRRLSPFVRQVDFALDWLFLESGRAVY 530

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002084|gb|EEZ98531.1| hypothetical protein TcasGA2_TC001035 [Tribolium castaneum]

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 132/227 (58%), Gaps = 25/227 (11%)

Query: 10  IVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGL 69
           I + G  RS  +LES     +      D+V   EM TS  R                   
Sbjct: 357 IPVPGHRRSKSSLESKSFSPQTP----DMVSDAEMATSGMRKR----------------- 395

Query: 70  CDHLPRSPSEQELIHSSKREFMEQLGVKDFSGL--DIRVEHIPGGTCLVREEVVEDNKLI 127
             H   +  E  LI  +   F+++L ++D + L  +++++ I  GT L++E+  +D  L 
Sbjct: 396 --HSVDNVDEDTLIEIATEAFIKELNLEDDTMLKGNVQIKEIAAGTYLMQEDSNKDVALC 453

Query: 128 YVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD 187
           YVI+G+L ++QK ++  ++VH+FT++ G+ +GGLAVLTGE S FTI+++    IA L ++
Sbjct: 454 YVISGALIVSQKMTESEDEVHMFTSYHGEFVGGLAVLTGEPSFFTIRAKHFTRIALLSKN 513

Query: 188 DCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
              +++    N+ L +AHSV++R+SPFVRQ DFALDW+F+E G+AVY
Sbjct: 514 TFYSMMKDHPNIVLYVAHSVVQRLSPFVRQVDFALDWLFMESGRAVY 560

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848584|ref|XP_003699929.1| PREDICTED: neuropathy target esterase sws-like, partial [Megachile rotundata]

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 111/160 (69%), Gaps = 6/160 (3%)

Query: 81  ELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFIT 137
            L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YV++G+L ++
Sbjct: 469 HLVQIATEAFVRELGLEDDSILKDGKVQIREVPAGTYLMKEESHKDVALVYVVSGALLVS 528

Query: 138 QKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLID 194
           Q+ S+G +   +V++F+A  G+++GGLAVLTGE S +TI+++ P+ IA L +     ++ 
Sbjct: 529 QRVSEGRDVGQEVYMFSAHQGEIVGGLAVLTGEPSFYTIRAKHPSRIALLSKPTFFAIMR 588

Query: 195 ADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
               V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 589 EQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 628

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777223|ref|XP_001120383.2| PREDICTED: neuropathy target esterase sws [Apis mellifera]

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 70/162 (43%), Positives = 110/162 (67%), Gaps = 6/162 (3%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLD---IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
           E  L+  +   F+ +LG++D S L    +++  +P GT L++EE  +D  L+YVI+G L 
Sbjct: 454 EAHLVQIATEAFIRELGLEDDSILKDGKVQIREVPSGTYLMKEESHKDVALVYVISGILI 513

Query: 136 ITQKSSDGSN---DVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTL 192
           ++Q+ S+G +   +VH+F+A  G+++GGLAVLTGE S +TI+++  + IA L +     +
Sbjct: 514 VSQRVSEGRDVGQEVHMFSAHQGEIVGGLAVLTGEPSFYTIRAKHSSRIALLSKSTFFAI 573

Query: 193 IDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
           +     V L +AHSV++R+SPFVRQ DFALDW+FLE G+AVY
Sbjct: 574 MREQPTVVLHVAHSVVRRLSPFVRQVDFALDWLFLESGRAVY 615

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	234
UNIPROTKB|H9KZH9	1070	PNPLA6 "Uncharacterized protei	0.649	0.142	0.393	1.9e-26
UNIPROTKB|E2RIR2	1366	PNPLA6 "Uncharacterized protei	0.726	0.124	0.373	2.9e-26
UNIPROTKB|Q8IY17	1366	PNPLA6 "Neuropathy target este	0.709	0.121	0.370	1.6e-25
UNIPROTKB|G3X6Z1	1302	LOC536255 "Uncharacterized pro	0.807	0.145	0.338	2.5e-25
UNIPROTKB|F1SCJ2	1365	PNPLA6 "Uncharacterized protei	0.709	0.121	0.358	6.9e-25
UNIPROTKB|Q5T362	1281	PNPLA7 "Patatin-like phospholi	0.807	0.147	0.343	8.4e-25
UNIPROTKB|Q6ZV29	1317	PNPLA7 "Patatin-like phospholi	0.807	0.143	0.343	8.7e-25
UNIPROTKB|E1BMJ5	1320	PNPLA6 "Uncharacterized protei	0.709	0.125	0.352	3.5e-24
UNIPROTKB|E2QXW6	1456	PNPLA7 "Uncharacterized protei	0.807	0.129	0.333	2.4e-23
RGD|1564611	1326	Pnpla6 "patatin-like phospholi	0.858	0.151	0.324	5.7e-23

UNIPROTKB|H9KZH9 PNPLA6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 280 (103.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 61/155 (39%), Positives = 96/155 (61%)

Query:    82 LIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQK 139
             +  ++K+E ++ + V+D S L+ RV   H   GT + R+   +D  L +V+ G L + Q+
Sbjct:   337 IFEAAKQELVKLMKVEDPSLLNNRVLLHHAKAGTVIARQGD-QDVSLHFVLWGCLHVYQR 395

Query:   140 SSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNV 199
               D + DV LF   PG+M+G LAVLTGE  +FTI++    T   + + D   ++    +V
Sbjct:   396 MIDKAEDVCLFLTQPGEMVGQLAVLTGEPLIFTIKANRDCTFLKISKSDFYEIMREQPSV 455

Query:   200 TLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
              L +AH+V+ RMSPFVRQ DFA+DW+ +E G+A+Y
Sbjct:   456 VLSVAHTVVTRMSPFVRQMDFAIDWMAVEAGRALY 490

GO:0004622 "lysophospholipase activity" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=IEA

UNIPROTKB|E2RIR2 PNPLA6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 2.9e-26, Sum P(2) = 2.9e-26
 Identities = 65/174 (37%), Positives = 101/174 (58%)

Query:    64 KLPEGLCDHLP-RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEV 120
             +L  G C   P +      +  ++KRE  + + ++D S L+ RV   H   GT + R+  
Sbjct:   477 ELATGGCPFGPYQGRQTSSIFEAAKRELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGD 536

Query:   121 VEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPAT 180
              +D  L +V+ G L + Q+  D + DV LF A PG+++G LAVLTGE  +FT++++   T
Sbjct:   537 -QDVSLHFVLWGCLHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCT 595

Query:   181 IAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
                + + D   ++ A  +V L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct:   596 FLRISKSDFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 649

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0004622 "lysophospholipase activity" evidence=IEA

UNIPROTKB|Q8IY17 PNPLA6 "Neuropathy target esterase" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 63/170 (37%), Positives = 99/170 (58%)

Query:    68 GLCDHLP-RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDN 124
             G C   P +      +  ++K+E  + + ++D S L+ RV   H   GT + R+   +D 
Sbjct:   480 GGCPFGPYQGRQTSSIFEAAKQELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGD-QDV 538

Query:   125 KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184
              L +V+ G L + Q+  D + DV LF A PG+++G LAVLTGE  +FT++++   T   +
Sbjct:   539 SLHFVLWGCLHVYQRMIDKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRI 598

Query:   185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
              + D   ++ A  +V L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct:   599 SKSDFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 648

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0008219 "cell death" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0004622 "lysophospholipase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|G3X6Z1 LOC536255 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 65/192 (33%), Positives = 110/192 (57%)

Query:    45 VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDI 104
             V S  + + V+A   S +    +G  D    S     ++ ++ ++ +  + + D S LD 
Sbjct:   416 VASKPKKSVVVAETPSAVLPNSDGTLDESVTSKKTDSILRAATQDLLTLMKLDDPSLLDG 475

Query:   105 RVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
             RV   H+PGGT ++R+   +D  +++V++G L + Q+  D   D  LF A PG+M+G LA
Sbjct:   476 RVALLHVPGGTVVLRQGD-QDTSILFVVSGLLHVYQRKIDSEEDTFLFMARPGEMVGQLA 534

Query:   163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFAL 222
             VLTGE  +FTI++    +   + +     ++     V L +AH+V++R+S FVRQ DFAL
Sbjct:   535 VLTGEPLIFTIRANRDCSFLSISKAHFYDIMRRQPAVVLSVAHTVVRRVSSFVRQIDFAL 594

Query:   223 DWVFLEGGQAVY 234
             DW+ +E G+A+Y
Sbjct:   595 DWMEVEAGRAIY 606

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|F1SCJ2 PNPLA6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 272 (100.8 bits), Expect = 6.9e-25, Sum P(2) = 6.9e-25
 Identities = 61/170 (35%), Positives = 99/170 (58%)

Query:    68 GLCDHLP-RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDN 124
             G C   P +      +  ++K+E  + + ++D + L+ RV   H   GT + R+   +D 
Sbjct:   479 GRCPFGPYQGRQTSSIFEAAKQELAKLMRIEDPALLNSRVLLHHAKAGTIIARQGD-QDV 537

Query:   125 KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184
              L +V+ G L + Q+  + + DV LF A PG+++G LAVLTGE  +FT++++   T   +
Sbjct:   538 SLHFVLWGCLHVYQRMINKAEDVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRI 597

Query:   185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
              + D   ++ A  +V L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct:   598 SKSDFYEIMRAQPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 647

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0004622 "lysophospholipase activity" evidence=IEA

UNIPROTKB|Q5T362 PNPLA7 "Patatin-like phospholipase domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 8.4e-25, P = 8.4e-25
 Identities = 66/192 (34%), Positives = 109/192 (56%)

Query:    45 VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDI 104
             V S SR + ++A   S +++  E   D    S     +  ++K++ +  + ++D S LD 
Sbjct:   405 VASKSRKSVMVAEIPSTVSQHSESHTDETLASRKSDAIFRAAKKDLLTLMKLEDSSLLDG 464

Query:   105 RVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
             RV   H+P GT + R+   +D  +++V++G L + Q+      D  LF   PG+M+G LA
Sbjct:   465 RVALLHVPAGTVVSRQGD-QDASILFVVSGLLHVYQRKIGSQEDTCLFLTRPGEMVGQLA 523

Query:   163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFAL 222
             VLTGE  +FT+++    +   + +     ++     V L +AH+V+KRMS FVRQ DFAL
Sbjct:   524 VLTGEPLIFTVKANRDCSFLSISKAHFYEIMRKQPTVVLGVAHTVVKRMSSFVRQIDFAL 583

Query:   223 DWVFLEGGQAVY 234
             DWV +E G+A+Y
Sbjct:   584 DWVEVEAGRAIY 595

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q6ZV29 PNPLA7 "Patatin-like phospholipase domain-containing protein 7" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 8.7e-25, P = 8.7e-25
 Identities = 66/192 (34%), Positives = 109/192 (56%)

Query:    45 VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDI 104
             V S SR + ++A   S +++  E   D    S     +  ++K++ +  + ++D S LD 
Sbjct:   414 VASKSRKSVMVAEIPSTVSQHSESHTDETLASRKSDAIFRAAKKDLLTLMKLEDSSLLDG 473

Query:   105 RVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
             RV   H+P GT + R+   +D  +++V++G L + Q+      D  LF   PG+M+G LA
Sbjct:   474 RVALLHVPAGTVVSRQGD-QDASILFVVSGLLHVYQRKIGSQEDTCLFLTRPGEMVGQLA 532

Query:   163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFAL 222
             VLTGE  +FT+++    +   + +     ++     V L +AH+V+KRMS FVRQ DFAL
Sbjct:   533 VLTGEPLIFTVKANRDCSFLSISKAHFYEIMRKQPTVVLGVAHTVVKRMSSFVRQIDFAL 592

Query:   223 DWVFLEGGQAVY 234
             DWV +E G+A+Y
Sbjct:   593 DWVEVEAGRAIY 604

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

UNIPROTKB|E1BMJ5 PNPLA6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
 Identities = 60/170 (35%), Positives = 98/170 (57%)

Query:    68 GLCDHLP-RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDN 124
             G C   P +      +  ++K+E  + + ++D + L+ RV   H   GT + R+   +D 
Sbjct:   444 GSCPFGPYQGRQTSSIFEAAKQELAKLMQIEDPTLLNSRVLLHHAKAGTIIARQGD-QDV 502

Query:   125 KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL 184
              L +V+ GSL + Q+  D + DV LF   PG+++G LAVLTGE  +FT++++   T   +
Sbjct:   503 SLHFVLWGSLHVYQRMIDKAEDVCLFVVQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRI 562

Query:   185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
              + +   ++ A  +V L  A +V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct:   563 SKSNFYEIMRAQPSVVLSAAQTVAARMSPFVRQMDFAIDWTAVEAGRALY 612

GO:0009887 "organ morphogenesis" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

GO:0004622 "lysophospholipase activity" evidence=IEA

UNIPROTKB|E2QXW6 PNPLA7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 283 (104.7 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 64/192 (33%), Positives = 107/192 (55%)

Query:    45 VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQLGVKDFSGLDI 104
             + S S+   ++A   S +    E   +    S     +  ++K++ +  + + D S LD 
Sbjct:   551 MASKSKKNVMVADAPSAVFHYSEANSEETVSSRKTDAIFRAAKKDLLTLMKLDDPSLLDG 610

Query:   105 RVE--HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
             RV   H+PGGT + R+   +D  +++V++G L + Q+  D   D  LF   PG+++G LA
Sbjct:   611 RVTLLHVPGGTVVSRQGD-QDVNILFVVSGLLHVYQRKIDSEEDTCLFVVRPGEIVGQLA 669

Query:   163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFAL 222
             VLTGE  +FTI++    +   + +     ++     V L +AH+V+KR+S FVRQ DFAL
Sbjct:   670 VLTGEPLIFTIKANRDCSFLSISKAHFYEIMRKQPTVVLGVAHTVVKRVSSFVRQIDFAL 729

Query:   223 DWVFLEGGQAVY 234
             DW+ +E G+AVY
Sbjct:   730 DWMEVEAGRAVY 741

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

RGD|1564611 Pnpla6 "patatin-like phospholipase domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 5.7e-23, P = 5.7e-23
 Identities = 71/219 (32%), Positives = 114/219 (52%)

Query:    33 YSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDH-----------LPRSPSE-- 79
             Y +G +   ++   S    T        EL + P G C++            P  P +  
Sbjct:   393 YERGRISVSLQEEASGGPQTASPRTPTQELREQPAGACEYSFCEDESATGGCPFGPYQGR 452

Query:    80 --QELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLF 135
                 +  ++KRE  + + ++D S L+ RV   H   GT + R+   +D  L +V+ G L 
Sbjct:   453 QTSSIFEAAKRELAKLMRIEDPSLLNSRVLLHHAKAGTIIARQGD-QDVSLHFVLWGCLH 511

Query:   136 ITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDA 195
             + Q+  D + +V LF A PG+++G LAVLTGE  +FT++++   T   + + D   ++ A
Sbjct:   512 VYQRMIDKAEEVCLFVAQPGELVGQLAVLTGEPLIFTLRAQRDCTFLRISKSDFYEIMRA 571

Query:   196 DMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY 234
               +V L  AH+V  RMSPFVRQ DFA+DW  +E G+A+Y
Sbjct:   572 QPSVVLSAAHTVAARMSPFVRQMDFAIDWTAVEAGRALY 610

GO:0001525 "angiogenesis" evidence=ISO

GO:0004622 "lysophospholipase activity" evidence=IEA

GO:0009887 "organ morphogenesis" evidence=ISO

GO:0046470 "phosphatidylcholine metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	234
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	1e-12
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	4e-11
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	2e-08
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	7e-08
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	2e-06
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	2e-06
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	5e-05

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 25/64 (39%), Positives = 36/64 (56%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
          D +DS YIVL+G +   K  E G+ +       GDL G + ++ +  R+ TV A+ DSEL
Sbjct: 33 DPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSEL 92

Query: 63 AKLP 66
            LP
Sbjct: 93 LVLP 96

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 57.3 bits (139), Expect = 4e-11
 Identities = 24/64 (37%), Positives = 38/64 (59%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
          D +DS YIVL+G+++  K  E G+ +  A    GD  G + ++    R+ TV+A+ DSEL
Sbjct: 15 DPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEPRSATVVALTDSEL 74

Query: 63 AKLP 66
            +P
Sbjct: 75 LVIP 78

Length = 91

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVT--STSRNTTVMAVRDS 60
           D  DS YI+++G +   K LE G+ +       GD  G + ++T    + +   +A+  +
Sbjct: 33  DVGDSFYIIVSGEVEVYKVLEDGEEQIVGTLGPGDFFGELALLTNSRRAASAAAVALELA 92

Query: 61  ELAKLP-EGLCDHLPRSP 77
            L ++        LP  P
Sbjct: 93  TLLRIDFRDFLQLLPELP 110

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 51.0 bits (122), Expect = 7e-08
 Identities = 16/64 (25%), Positives = 33/64 (51%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           + +DS YI+L+G ++     E G+         GD  G + ++    R+ + +A+ D E+
Sbjct: 39  EEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEV 98

Query: 63  AKLP 66
            ++P
Sbjct: 99  LEIP 102

Length = 214

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 104 IRVEHIPGGTCLVRE-EVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLA 162
           +     P G  ++R+ +    + L  V++GS+ + +   DG  +  +    PGD+ G LA
Sbjct: 17  LEERRFPAGEVIIRQGDPA--DSLYIVLSGSVEVYKLDEDGR-EQIVGFLGPGDLFGELA 73

Query: 163 VLTGEASVFTIQSRLPATIAWLPQDD 188
           +L       T+++   + +  LP+ D
Sbjct: 74  LLGNGPRSATVRALTDSELLVLPRSD 99

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT 165
           +     G  + RE     + L  V++G + + +   DG  +  L    PGD  G LA+L 
Sbjct: 1   LRSFKKGEVIFREGD-PADSLYIVLSGKVKVYKLDEDG-REQILAFLGPGDFFGELALLG 58

Query: 166 GEASVFTIQSRLPATIAWLPQDDCSTLIDAD 196
           GE    T+ +   + +  +P++D   L++ D
Sbjct: 59  GEPRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 79  EQELIHSSKREFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQ 138
           E  L++    E +E L       L + V  +P G  L  E   E + L  +++G + +  
Sbjct: 4   ENPLLNLLPSELLELLA------LKLEVRKLPKGEVLFTE-GEEADSLYIILSGIVKLYA 56

Query: 139 KSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMN 198
            + DG   + L    PGD  G LA+L G+    +  +     +  +P+ D   L+     
Sbjct: 57  NTEDGREII-LGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPK 115

Query: 199 VTLKIAHSVLKRMS 212
           + L +   + +R+ 
Sbjct: 116 LALALLRLLARRLR 129

Length = 214

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	234
KOG1113|consensus	368		99.95
KOG0614|consensus	732		99.94
KOG2968|consensus	1158		99.9
KOG2968|consensus	1158		99.81
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.73
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.73
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.72
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.69
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.68
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.68
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.66
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.63
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.6
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.58
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.58
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.54
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.53
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.52
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.51
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.5
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.5
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.41
COG2905	610	Predicted signal-transduction protein containing c	99.4
KOG1113|consensus	368		99.39
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.37
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.37
KOG0498|consensus	727		99.36
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.36
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.32
KOG0614|consensus	732		99.26
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.25
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.23
PLN02868	413	acyl-CoA thioesterase family protein	99.22
KOG0500|consensus	536		99.09
PLN02868	413	acyl-CoA thioesterase family protein	99.04
KOG0499|consensus	815		99.02
KOG0498|consensus	727		98.87
KOG0499|consensus	815		98.82
KOG0500|consensus	536		98.77
COG2905	610	Predicted signal-transduction protein containing c	98.6
KOG0501|consensus	971		98.21
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	98.07
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	97.9
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	97.21
KOG0501|consensus	971		97.18
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	96.53
PRK11171	266	hypothetical protein; Provisional	94.14
KOG3542|consensus	1283		93.52
PF04648	13	MF_alpha: Yeast mating factor alpha hormone; Inter	93.51
KOG3542|consensus	1283		93.23
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	91.92
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	91.63
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	90.41
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	89.64
KOG2378|consensus	573		87.84
smart00835	146	Cupin_1 Cupin. This family represents the conserve	87.1
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	86.32
smart00835	146	Cupin_1 Cupin. This family represents the conserve	84.48
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	83.54
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	82.71

>KOG1113|consensus

Probab=99.95  E-value=2e-27  Score=190.80  Aligned_cols=187  Identities=18%  Similarity=0.208  Sum_probs=153.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||.||.||+|.+|++.|++..     ..+..++||.+|||+||+.+.||.||++|.+++.+|.+++..|..++..+.. 
T Consensus       159 qGdeGd~fYvI~kGt~dVyv~~-----~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~-  232 (368)
T KOG1113|consen  159 QGDEGDNFYVIDKGTFDVYVNG-----TYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCI-  232 (368)
T ss_pred             cCCcCCcEEEEecceEEEEECC-----eEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccch-
Confidence            7999999999999999999873     6789999999999999999999999999999999999999999998776541 


Q ss_pred             HHHHHHHHHHHHHhCC------CCCcccccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          81 ELIHSSKREFMEQLGV------KDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        81 ~l~~~~~~~l~~~l~~------~~~~~l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      ...+.. ..+.+..++      .++.-+.+.+  +.|++|+.|..+ |++++.+|+|.+|++.+.... +|   ..+ .+
T Consensus       233 kkrkMy-~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~q-g~~ge~f~~i~eGEvdv~~~~-~~---v~v-kl  305 (368)
T KOG1113|consen  233 KKRKMY-EPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQ-GDQGEHFYIIEEGEVDVLKKR-DG---VEV-KL  305 (368)
T ss_pred             hhhhhh-hhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEec-cCCcceEEEecccccchhhcc-CC---eEE-Ee
Confidence            111111 111111111      0111222333  899999999999 999999999999999998765 22   444 89


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHH
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVT  200 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~  200 (234)
                      +.||+||+.+++.+.|+.++|.|..+..|..++++.|+.++.-...++
T Consensus       306 ~~~dyfge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc~dil  353 (368)
T KOG1113|consen  306 KKGDYFGELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPCQDIL  353 (368)
T ss_pred             chhhhcchHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999999998665544

>KOG0614|consensus

Probab=99.94  E-value=1e-27  Score=201.01  Aligned_cols=193  Identities=16%  Similarity=0.203  Sum_probs=160.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||+|+.+|++.+|+++|++..     ..++.+++|..|||+|+|.+.+|+|||+|++++.+|.|+|+.|+.++......
T Consensus       191 ege~Gs~~yV~aeG~~~V~~~g-----~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~  265 (732)
T KOG0614|consen  191 EGEPGSHLYVSAEGELQVSREG-----KLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLE  265 (732)
T ss_pred             cCCCCceEEEeecceEEEeeCC-----eeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999998753     78999999999999999999999999999999999999999999997765421


Q ss_pred             H---HHHHHHHHHHHHhCCCCCcc--cccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEEC
Q psy8820          81 E---LIHSSKREFMEQLGVKDFSG--LDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAF  153 (234)
Q Consensus        81 ~---l~~~~~~~l~~~l~~~~~~~--l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~  153 (234)
                      .   ..+.+ +......++++.-+  +.+.+  ..|.+|+.|++| |+.++.+|+|.+|.|++.+......++..+..++
T Consensus       266 r~~~~~~fL-rsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirq-ge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~  343 (732)
T KOG0614|consen  266 RHEQYMNFL-RSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQ-GEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLN  343 (732)
T ss_pred             HHHHHHHHH-HhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEee-cCCCCeEEEEecceEEEeecCCCCCchhHHhhcc
Confidence            1   11111 22222222332221  22222  799999999999 9999999999999999998876655778899999


Q ss_pred             CCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCHHhHHHHHhcchHHH
Q psy8820         154 PGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQDDCSTLIDADMNVT  200 (234)
Q Consensus       154 ~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~p~~~  200 (234)
                      .||+|||-+++....+++++.|.++ ++|+.|+++.|.+++....++.
T Consensus       344 kGd~FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~  391 (732)
T KOG0614|consen  344 KGDYFGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK  391 (732)
T ss_pred             ccchhhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence            9999999999999999999999877 9999999999999998888776

>KOG2968|consensus

Probab=99.90  E-value=4.8e-23  Score=181.55  Aligned_cols=232  Identities=31%  Similarity=0.454  Sum_probs=182.3

Q ss_pred             CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeee----eccccCCC---ceeEEEEccceeEEEeCcccccccc
Q psy8820           2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGL----IEMVTSTS---RNTTVMAVRDSELAKLPEGLCDHLP   74 (234)
Q Consensus         2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe----~~ll~~~~---r~~tv~A~~~~~l~~i~~~~f~~l~   74 (234)
                      |++.|.+|++.+|.++|.....+|++..+....||+.|--    ++.+.+.|   +..+++|.++|++..+|...|+...
T Consensus       130 ~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~akA~t~~tv~~~p~~sF~~~~  209 (1158)
T KOG2968|consen  130 GESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAKAATDCTVARIPYTSFRESF  209 (1158)
T ss_pred             CCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeeeeecCceEEEeccchhhhhh
Confidence            7889999999999999999999999999999999987732    22344554   5678999999999999999999999


Q ss_pred             CCCchHH--HHHHHHHHH--------HHHhCCC-----------------------------------------------
Q psy8820          75 RSPSEQE--LIHSSKREF--------MEQLGVK-----------------------------------------------   97 (234)
Q Consensus        75 ~~~p~~~--l~~~~~~~l--------~~~l~~~-----------------------------------------------   97 (234)
                      ..+|+..  ..+.....+        .+.+.+.                                               
T Consensus       210 ~k~P~s~iriiQvvmTRLq~vTf~t~~~YLGL~~el~~~e~~~~l~~~~g~~~~~~~~~g~s~~~lq~~~~~~~~~~s~~  289 (1158)
T KOG2968|consen  210 HKNPESSIRIIQVVMTRLQRVTLTTLHNYLGLSNELMSIERRKRLDSSEGSTYGNRATIGASSSSLQLLVEIPYSEHSRS  289 (1158)
T ss_pred             ccChHHHHHHHHHHHHHHHHhhHHHHHhhcCcchhhhhhhhhccccccccccccCccccCCCCccccccccccccccccc
Confidence            9999511  111110000        0000000                                               


Q ss_pred             ---------CCccc---------------------------------------ccee-eeecC-----------------
Q psy8820          98 ---------DFSGL---------------------------------------DIRV-EHIPG-----------------  111 (234)
Q Consensus        98 ---------~~~~l---------------------------------------~~~~-~~~~~-----------------  111 (234)
                               ..+.+                                       ...+ ..+.+                 
T Consensus       290 v~~~~~~~n~~dlls~~~~gt~~~~~sv~~l~~~~~~~~~~~~~~s~~~ls~~~t~i~~~~~~~~~~~~~~e~~~~~~~~  369 (1158)
T KOG2968|consen  290 VKEGSKLFNAGDLLSDSTRGTRKLFASVHGLLIDALLVRDNIQQGSFSMLSKTGTSIHLEIFEGEHKLVEKEGRKISSDG  369 (1158)
T ss_pred             ccccccccCCcccccccccCccccccccccccccccchhhhhhhcccccccccCccchhhccCCcccccccccchhhhhh
Confidence                     00000                                       0001 11222                 


Q ss_pred             ------------------------CCEEEEecCCCCceEEEEEeCeEEEEEecCCC-----CccEEEEEECCCceEEeee
Q psy8820         112 ------------------------GTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-----SNDVHLFTAFPGDMIGGLA  162 (234)
Q Consensus       112 ------------------------g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-----~~~~~~~~~~~g~~~G~~~  162 (234)
                                              .++|.++ |+...++|++.+|.+.+++...+.     .....++.++||+++|.++
T Consensus       370 v~~l~~~l~~~~~~si~ll~~~keitiiv~q-~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla  448 (1158)
T KOG2968|consen  370 VDALDLFLGLSNEDSIVLLELEKEITIIVEQ-GARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLA  448 (1158)
T ss_pred             HHHHHHHhhhcccchhhhhccccceEEEEec-ccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhh
Confidence                                    2456788 999999999999999888644332     1357889999999999999


Q ss_pred             eeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccceeceeeeccCcccC
Q psy8820         163 VLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       163 ~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  234 (234)
                      +++|.|+.++++|.+||.++.+++++|.+++.++|.+++.+++.+.++++++++++|.|++|+++++|+++|
T Consensus       449 ~lt~e~S~~tirArsdt~v~~isrs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~aly  520 (1158)
T KOG2968|consen  449 ILTNEPSFITIRARSDTRVLFISRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALY  520 (1158)
T ss_pred             hhcCCcceEEEEEecceEEEEeeHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>KOG2968|consensus

Probab=99.81  E-value=2.9e-20  Score=164.24  Aligned_cols=212  Identities=16%  Similarity=0.186  Sum_probs=170.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCC------cEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccccccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESG------KRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLP   74 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g------~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~   74 (234)
                      ||+...+.|.|+.|.+.++...-+-      ....+...+||+++|-++++++.|...|++|.+||.++.+++.+|.+++
T Consensus       400 q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~isrs~l~~~~  479 (1158)
T KOG2968|consen  400 QGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFISRSDLERFL  479 (1158)
T ss_pred             cccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEeeHHHHHHHH
Confidence            6888999999999999776543221      1356778999999999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCcccccee--eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          75 RSPSEQELIHSSKREFMEQLGVKDFSGLDIRV--EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        75 ~~~p~~~l~~~~~~~l~~~l~~~~~~~l~~~~--~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      ...|. ..+... ..+.+++..--. .+...+  ..+.+|+.+++| ||..+++|+|++|.++.......| +..++...
T Consensus       480 ~~~p~-I~L~ia-~svl~~lsp~lr-~~D~AldWv~l~~g~alyrq-gD~Sd~iyvVl~GRlRsv~~~~~~-k~~i~~Ey  554 (1158)
T KOG2968|consen  480 DAEPL-IYLRIA-HSVLRRLSPFLR-KLDFALDWVRLEPGQALYRQ-GDSSDSIYVVLNGRLRSVIRQSGG-KKEIVGEY  554 (1158)
T ss_pred             HhCce-EEEehh-hHHHHhcCHHHh-hhhhhcceEEeccccHHHhc-CCccCcEEEEecCeehhhhhccCc-cchhhhhc
Confidence            88882 212222 222222110000 011112  589999999999 999999999999999998765544 55688899


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ  217 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  217 (234)
                      +.||.+|++.+++++++..|+.|+.|+++.+||...|..+..++|.+..++.+.+++++..-+++
T Consensus       555 grGd~iG~~E~lt~~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~~~g~l~~  619 (1158)
T KOG2968|consen  555 GRGDLIGEVEMLTKQPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEKILGSLQR  619 (1158)
T ss_pred             cCcceeehhHHhhcCCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHHHHHHHHHhhhhhcc
Confidence            99999999999999999999999999999999999999999999999998888888877555443

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.73  E-value=5.2e-17  Score=129.07  Aligned_cols=106  Identities=16%  Similarity=0.168  Sum_probs=98.7

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+.+ |++++++|+|++|.++++..+.+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.||
T Consensus        33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G-~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~  110 (226)
T PRK10402         33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANG-KVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALP  110 (226)
T ss_pred             heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEE
Confidence            3799999999999 999999999999999999988777 78889999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSP  213 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~  213 (234)
                      ++.|.+++.++|.+...+++.+.+++..
T Consensus       111 ~~~~~~ll~~~p~~~~~~~~~l~~~~~~  138 (226)
T PRK10402        111 MKDCRPLLLNDALFLRKLCKFLSHKNYR  138 (226)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888877544

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.73  E-value=1.4e-16  Score=125.11  Aligned_cols=106  Identities=17%  Similarity=0.340  Sum_probs=96.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEeC
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i~  185 (234)
                      ++|++|++|+.+ |++++++|+|++|.++++....+| ++..+..+.||++||+.+++.+. ++.++++|.++|+++.|+
T Consensus        23 ~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~  100 (211)
T PRK11753         23 HKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEIS  100 (211)
T ss_pred             EEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEc
Confidence            699999999999 999999999999999999877776 78889999999999999988764 678899999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++.|.+++.++|.+..++++.+..++...
T Consensus       101 ~~~~~~l~~~~p~~~~~~~~~~~~~l~~~  129 (211)
T PRK11753        101 YKKFRQLIQVNPDILMALSAQMARRLQNT  129 (211)
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888887777554

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.72  E-value=2.8e-17  Score=111.47  Aligned_cols=90  Identities=22%  Similarity=0.444  Sum_probs=85.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      ++|++|++|+++ |+.++++|+|++|.++++....++ +..++..+.+|++||+.+++.+.++.++++|.++|+++.||+
T Consensus         2 ~~~~~g~~i~~~-g~~~~~~~~i~~G~v~~~~~~~~~-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~   79 (91)
T PF00027_consen    2 KTYKKGEVIYRQ-GDPCDHIYIILSGEVKVSSINEDG-KEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPR   79 (91)
T ss_dssp             EEESTTEEEEET-TSBESEEEEEEESEEEEEEETTTS-EEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEH
T ss_pred             eEECCCCEEEeC-CCcCCEEEEEEECceEEEeceecc-eeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeH
Confidence            589999999999 999999999999999999988776 667899999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchH
Q psy8820         187 DDCSTLIDADMN  198 (234)
Q Consensus       187 ~~~~~l~~~~p~  198 (234)
                      ++|.++++++|+
T Consensus        80 ~~~~~~~~~~p~   91 (91)
T PF00027_consen   80 EDFLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHHHSHH
T ss_pred             HHHHHHHHhCcC
Confidence            999999999995

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.69  E-value=4.7e-16  Score=120.49  Aligned_cols=101  Identities=13%  Similarity=0.259  Sum_probs=91.9

Q ss_pred             CCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEcCCeEEEEeCHHhH
Q psy8820         112 GTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSRLPATIAWLPQDDC  189 (234)
Q Consensus       112 g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~~~~~~~~i~~~~~  189 (234)
                      |+.|+++ |++++++|+|++|.|+++....+| ++.++..+.||++||+.+++.+.++  .++++|.++|.++.||++.|
T Consensus         1 g~~l~~~-g~~~~~~~~i~~G~v~~~~~~~~G-~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~   78 (193)
T TIGR03697         1 GKTIFFP-GDPAEKVYFLRRGAVKLSRVYESG-EEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQV   78 (193)
T ss_pred             CCceecC-CCCCCcEEEEEecEEEEEEeCCCC-cEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHH
Confidence            6889999 999999999999999999888777 7888999999999999999987754  47899999999999999999


Q ss_pred             HHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         190 STLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       190 ~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      .+++.++|.+...+++.+..++...
T Consensus        79 ~~l~~~~p~l~~~~~~~l~~~l~~~  103 (193)
T TIGR03697        79 EKAIEEDPDLSMLLLQGLSSRILQT  103 (193)
T ss_pred             HHHHHHChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888777654

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.68  E-value=4.1e-16  Score=124.72  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=96.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|++|.++++... +| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.||+
T Consensus        33 ~~~~~ge~l~~~-g~~~~~~~~v~~G~v~~~~~~-~~-~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~  109 (236)
T PRK09392         33 QRFPPGTMLITE-GEPADFLFVVLDGLVELSASS-QD-RETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPA  109 (236)
T ss_pred             eecCCCCEEEeC-CCccceEEEEEeCEEEEEEcC-CC-ceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeH
Confidence            699999999999 999999999999999999765 44 467889999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +.|.+++.++|.+...+++.+..++...
T Consensus       110 ~~~~~l~~~~p~l~~~~~~~l~~~~~~~  137 (236)
T PRK09392        110 ELVREAMSEDPGFMRAVVFELAGCYRGL  137 (236)
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888887666554

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.68  E-value=6e-16  Score=121.20  Aligned_cols=107  Identities=21%  Similarity=0.375  Sum_probs=100.0

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+.+ |++.+++|+|.+|.++++....+| ++.++.++.||++||+.+++.+.|+.++++|.+||+++.+++
T Consensus        26 ~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~  103 (214)
T COG0664          26 RKLPKGEVLFTE-GEEADSLYIILSGIVKLYANTEDG-REIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPR  103 (214)
T ss_pred             EeeCCCCEEEcC-CCcCceEEEEEEeEEEEEEECCCC-cEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecH
Confidence            699999999999 999999999999999999998886 789999999999999999999889999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      +.|.+++.++|.+...++..+.+++....
T Consensus       104 ~~~~~~~~~~p~l~~~l~~~~~~~l~~~~  132 (214)
T COG0664         104 KDFLELLAESPKLALALLRLLARRLRQAL  132 (214)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888888777653

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.66  E-value=2.6e-15  Score=119.60  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+.+ |+.++++|+|++|.++++..+.+| ++.++..+.||++||+.   .+.++.++++|.++|.++.|+
T Consensus        40 ~~~~~kge~l~~~-Gd~~~~ly~I~~G~vkl~~~~~~G-~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~  114 (230)
T PRK09391         40 EFSYKKGEEIYGE-GEPADYVYQVESGAVRTYRLLSDG-RRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIK  114 (230)
T ss_pred             eEEECCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCceeccc---CCCcCCeEEEEcCceEEEEEE
Confidence            3899999999999 999999999999999999988777 67888899999999964   466778999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++.|.+++.++|.+...+++.+.+++...
T Consensus       115 ~~~f~~l~~~~p~l~~~l~~~l~~~l~~~  143 (230)
T PRK09391        115 RRSLEQAAATDVDVARALLSLTAGGLRHA  143 (230)
T ss_pred             HHHHHHHHhhChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888888777653

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.63  E-value=4.8e-15  Score=118.41  Aligned_cols=104  Identities=14%  Similarity=0.096  Sum_probs=92.6

Q ss_pred             eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHH
Q psy8820         108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQD  187 (234)
Q Consensus       108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~  187 (234)
                      .|++|++|+++ |+.++++|+|.+|.++++..+.+| ++.++.++.||++||+.+++. .+...+++|.++|+++.||++
T Consensus        41 ~~~kge~l~~~-Gd~~~~ly~v~~G~v~~~~~~~~G-~e~i~~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~  117 (235)
T PRK11161         41 PIQKGQTLFKA-GDELKSLYAIRSGTIKSYTITEQG-DEQITGFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFE  117 (235)
T ss_pred             eecCCCEeECC-CCCcceEEEEeeceEEEEEECCCC-CEEEEEeccCCceeccccccC-CCCcceEEEeccEEEEEEEHH
Confidence            79999999999 999999999999999999988777 788888999999999876654 445578999999999999999


Q ss_pred             hHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         188 DCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       188 ~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      .|.+++.++|.+...+++.+..++...
T Consensus       118 ~f~~l~~~~p~~~~~~~~~~~~~~~~~  144 (235)
T PRK11161        118 TLDDLSGKMPKLRQQIMRLMSGEIKGD  144 (235)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence            999999999999998888877666543

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.60  E-value=1.1e-14  Score=113.63  Aligned_cols=99  Identities=16%  Similarity=0.231  Sum_probs=84.3

Q ss_pred             eeecCCCEEEEecCC--CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVV--EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~--~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      +.|++|++|+.+ |+  +++++|+|++|.++++..+.+| ++.++..+.|||+||+.++ .+.++++++.|.++|+++.|
T Consensus         9 ~~~~kg~~l~~~-Gd~~~~~~~y~I~~G~vr~~~~~~~G-~e~~l~~~~~Gd~~G~~~~-~~~~~~~~~~A~~~~~v~~i   85 (202)
T PRK13918          9 VTYRPGAVILYP-GVPGPSDMLYRVRSGLVRLHTVDDEG-NALTLRYVRPGEYFGEEAL-AGAERAYFAEAVTDSRIDVL   85 (202)
T ss_pred             eEecCCCEEEcC-CCCCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCeechHHh-cCCCCCceEEEcCceEEEEE
Confidence            689999999999 99  7799999999999999988887 7899999999999999655 46778899999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++.|      +|.+...++..+.+++...
T Consensus        86 ~~~~~------~~~~~~~l~~~l~~~~~~~  109 (202)
T PRK13918         86 NPALM------SAEDNLVLTQHLVRTLARA  109 (202)
T ss_pred             EHHHc------ChhhHHHHHHHHHHHHHHH
Confidence            99887      4666666666666555544

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.58  E-value=2.4e-15  Score=101.91  Aligned_cols=78  Identities=31%  Similarity=0.424  Sum_probs=74.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +|++.+++|+|++|.++++....+|+...+..+.+|++||+.+++.+.|+.++++|.++|+++.||++.|..+++++|
T Consensus        13 ~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p   90 (91)
T PF00027_consen   13 QGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPREDFLQLLQQDP   90 (91)
T ss_dssp             TTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHHHHHHHHHHSH
T ss_pred             CCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHHHHHHHHHhCc
Confidence            689999999999999999999999988889999999999999999999999999999999999999999999988877

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.58  E-value=1.3e-14  Score=102.01  Aligned_cols=95  Identities=22%  Similarity=0.376  Sum_probs=88.1

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+.+ |++.+++|+|.+|.++++....+| ++..+..+.+|++||...++.+.++.++++|.++|+++.|+.
T Consensus        20 ~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~   97 (115)
T cd00038          20 RRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDG-REQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPR   97 (115)
T ss_pred             eeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-cEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeH
Confidence            589999999999 999999999999999999887776 678899999999999999888888999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHH
Q psy8820         187 DDCSTLIDADMNVTLKI  203 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~  203 (234)
                      +.|.+++.++|.+..++
T Consensus        98 ~~~~~~~~~~~~~~~~~  114 (115)
T cd00038          98 SDFRRLLQEYPELARRL  114 (115)
T ss_pred             HHHHHHHHHCcHhHHhc
Confidence            99999999999887554

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.54  E-value=4.2e-14  Score=109.51  Aligned_cols=79  Identities=18%  Similarity=0.296  Sum_probs=74.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC--ceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS--RNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~--r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+.+++|+|.+|.|+++...++|++..+..++||++||+.+++.+.+  +.++++|.++|+++.+|++.|..++..+|
T Consensus         7 ~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p   86 (193)
T TIGR03697         7 PGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEKAIEEDP   86 (193)
T ss_pred             CCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHHHHHHCh
Confidence            6999999999999999999999999999999999999999999998875  56889999999999999999999999998


Q ss_pred             h
Q psy8820          79 E   79 (234)
Q Consensus        79 ~   79 (234)
                      .
T Consensus        87 ~   87 (193)
T TIGR03697        87 D   87 (193)
T ss_pred             H
Confidence            3

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.53  E-value=4.8e-14  Score=112.04  Aligned_cols=78  Identities=19%  Similarity=0.264  Sum_probs=75.6

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+.+.+|+|.+|.|+++....+|++..+..+.||++||+.+++.+.|+.++++|.++|+++.+|++.|..++..+|
T Consensus        45 ~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p  122 (226)
T PRK10402         45 EGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEECWCLALPMKDCRPLLLNDA  122 (226)
T ss_pred             CCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEeccEEEEEEEHHHHHHHHhcCH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999988

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.52  E-value=5.1e-14  Score=110.19  Aligned_cols=78  Identities=22%  Similarity=0.365  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++++|+|.+|.++++...++|++..+..++|||+|||.+++.+.||+++++|.++|+++.+|++.|..++...|
T Consensus        37 ~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p  114 (214)
T COG0664          37 EGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESP  114 (214)
T ss_pred             CCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCccceEEEcceEEEEEecHHHHHHHHhhCc
Confidence            699999999999999999999999999999999999999999999999999999999999999999999988877655

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.51  E-value=2.5e-13  Score=95.85  Aligned_cols=97  Identities=22%  Similarity=0.303  Sum_probs=87.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeee--eCcceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVL--TGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l--~~~~~~~~v~A~~~~~~~~i  184 (234)
                      +.+++|++|+++ |++++++|+|.+|.++++....+| ++..+..+.+|++||+..++  ...+...+++|.++|.++.+
T Consensus        20 ~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~   97 (120)
T smart00100       20 VRYPAGEVIIRQ-GDVGDSFYIILSGEVRVYKVLEDG-REQILGILGPGDFFGELALLTNSRRAASATAVALELATLLRI   97 (120)
T ss_pred             EEeCCCCEEEeC-CCcCCcEEEEEeeEEEEEEECCCC-ceEEEEeecCCceechhhhccCCCcccceEEEEEeeEEEEcc
Confidence            589999999999 999999999999999999876665 78889999999999999888  35677789999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHH
Q psy8820         185 PQDDCSTLIDADMNVTLKIAH  205 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~  205 (234)
                      +.+.|...+.+++.+...++.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~  118 (120)
T smart00100       98 DFRDFLQLLQENPQLLLELLL  118 (120)
T ss_pred             CHHHHHHHHHHhHHHHHHHHh
Confidence            999999999999988766654

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.50  E-value=2.3e-13  Score=126.70  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=96.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|+||+.|+.| |+.++.+|||.+|.|++... .++ ++.++..+++|++|||.+++.+.|+.++++|.++|+++.|++
T Consensus       400 ~~~~pge~I~~q-ge~~~~lY~I~~G~V~i~~~-~~~-~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~  476 (823)
T PLN03192        400 EYIPPREDVIMQ-NEAPDDVYIVVSGEVEIIDS-EGE-KERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKT  476 (823)
T ss_pred             eeeCCCCEEEEC-CCCCceEEEEEecEEEEEEe-cCC-cceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEH
Confidence            789999999999 99999999999999999853 233 688899999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++|.++++++|+....+++++.+++.+.
T Consensus       477 ~~f~~ll~~~p~d~~~i~~~~l~~~~~l  504 (823)
T PLN03192        477 STLIEAMQTRQEDNVVILKNFLQHHKEL  504 (823)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999988876554

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.50  E-value=1.6e-13  Score=107.72  Aligned_cols=79  Identities=18%  Similarity=0.285  Sum_probs=74.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+.+.+|+|++|.++++....+|++..+..+++||+||+.+++.+. ++.++++|.++|+++.+|++.|..++..+|+
T Consensus        34 ~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  113 (211)
T PRK11753         34 AGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD  113 (211)
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHH
Confidence            689999999999999999998889999999999999999999999864 7889999999999999999999999999883

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.41  E-value=8e-13  Score=105.67  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++.+|+|++|.++++... +|++..+..+.+|++||+.+++.+.|+.++++|.++|+++.+|.+.|..++..+|.
T Consensus        44 ~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~  121 (236)
T PRK09392         44 EGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILAAVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPG  121 (236)
T ss_pred             CCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhHHHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHH
Confidence            6999999999999999999864 66788899999999999999999999999999999999999999999999999884

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.40  E-value=1e-12  Score=112.47  Aligned_cols=103  Identities=15%  Similarity=0.130  Sum_probs=94.1

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      ..|.+|++|+.. |.+..++|+|.+|.|.++...  |   ..+..+..||+||..++++..+......|.+|+.|+.||+
T Consensus        33 ~yy~kge~ii~~-~~p~~~l~vi~kG~vev~~~~--g---~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~  106 (610)
T COG2905          33 KYYRKGEIIIYA-GSPVHYLYVIRKGVVEVRSDG--G---EVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPK  106 (610)
T ss_pred             ccccCCCeeecC-CCCcceeEEEEeceeeEEcCC--C---eeeeeeccCccccchhhcccCCCcceeEeeccceEEecCH
Confidence            499999999999 999999999999999998643  3   3888999999999999999888888889999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      +.|.++++++|.|..++...++.|++...
T Consensus       107 s~F~ql~~~n~~f~~ff~~~~akR~~~~~  135 (610)
T COG2905         107 SVFMQLMEENPEFADFFLRSLAKRLRDIA  135 (610)
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888653

>KOG1113|consensus

Probab=99.39  E-value=1.1e-12  Score=106.42  Aligned_cols=118  Identities=15%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|+.|+.| |+.++.+|+|-+|.+.||..      ...+..+.||..|||++++.+.|+.+|+.|.+++.+|.+++
T Consensus       148 ~~v~~G~~Vi~q-GdeGd~fYvI~kGt~dVyv~------~~~v~~~~~g~sFGElALmyn~PRaATv~a~t~~klWgldr  220 (368)
T KOG1113|consen  148 KRVKAGETVIKQ-GDEGDNFYVIDKGTFDVYVN------GTYVTTYSPGGSFGELALMYNPPRAATVVAKSLKKLWGLDR  220 (368)
T ss_pred             eeecCCcEEEec-CCcCCcEEEEecceEEEEEC------CeEEeeeCCCCchhhhHhhhCCCcccceeeccccceEEEee
Confidence            889999999999 99999999999999999985      35677899999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhh------chhhh-hccceeceeeeccCc
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRM------SPFVR-QFDFALDWVFLEGGQ  231 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~------~~~~~-~~~~~l~~~~~~~~~  231 (234)
                      ..|.+++-.+......+.....+.+      ..+-| .+--+|....++.|+
T Consensus       221 ~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~  272 (368)
T KOG1113|consen  221 TSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGE  272 (368)
T ss_pred             ceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCc
Confidence            9999998887766555555444322      22222 233346667777664

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.37  E-value=1.2e-12  Score=91.81  Aligned_cols=78  Identities=35%  Similarity=0.436  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +|++.+.+|+|.+|.++++....+|++..+..+.+|++||+.+++.+.++..+++|.++|.++.|+++.|..++.++|
T Consensus        31 ~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~  108 (115)
T cd00038          31 QGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYP  108 (115)
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCCceEEEcCceEEEEEeHHHHHHHHHHCc
Confidence            588999999999999999999999999999999999999999999899999999999999999999999999988887

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.37  E-value=4.8e-12  Score=100.85  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=70.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|++|.|+++...++|++.++..+.+||+||+.   .+.++.++++|.++|+++.+|.+.|..++..+|+
T Consensus        52 ~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~  127 (230)
T PRK09391         52 EGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTVRLIKRRSLEQAAATDVD  127 (230)
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEEEEEEHHHHHHHHhhChH
Confidence            699999999999999999999999999999999999999964   4678899999999999999999999999999983

>KOG0498|consensus

Probab=99.36  E-value=8.1e-13  Score=118.25  Aligned_cols=104  Identities=17%  Similarity=0.185  Sum_probs=92.1

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE-eeeeeeC-cceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG-GLAVLTG-EASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G-~~~~l~~-~~~~~~v~A~~~~~~~~i  184 (234)
                      ..+++|+.|++| |++.+.+|||.+|.+++...+.+  .+.....++|||+|| |+..... .|+++||+|.+.|+++.|
T Consensus       445 ~~f~pge~iire-Gd~v~~myFI~rG~le~~~~~~g--~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L  521 (727)
T KOG0498|consen  445 EYFTPGEYIIRE-GDPVTDMYFIVRGSLESITTDGG--GFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRL  521 (727)
T ss_pred             hccCCCCeEEec-CCccceeEEEEeeeEEEEEccCC--ceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhc
Confidence            799999999999 99999999999999999876543  588899999999999 7777766 888999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSP  213 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~  213 (234)
                      .+++|...++++|.+...+.++..+-++.
T Consensus       522 ~~~dL~~V~~~f~~~~~~~l~~~~r~~s~  550 (727)
T KOG0498|consen  522 SADDLKEVLQQFRRLGSKFLQHTFRYYSH  550 (727)
T ss_pred             cHHHHHHHHHHhHHHHHHHHHhHHHHhhh
Confidence            99999999999999988887755544444

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.36  E-value=6.1e-12  Score=98.12  Aligned_cols=69  Identities=23%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             CCC--CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccc
Q psy8820           1 QYD--RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLC   70 (234)
Q Consensus         1 ~Gd--~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f   70 (234)
                      |||  +++++|+|++|.|+++...++|++..+..+.|||+||+.+++ +.++++++.|.++|+++.||++.|
T Consensus        20 ~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~~i~~~~~   90 (202)
T PRK13918         20 PGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRIDVLNPALM   90 (202)
T ss_pred             CCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEEEEEHHHc
Confidence            688  679999999999999999999999999999999999997654 678999999999999999999887

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.32  E-value=9.7e-12  Score=99.31  Aligned_cols=78  Identities=22%  Similarity=0.271  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+.+++|+|.+|.|+++..+.+|++..+..+.|||+||+..++. .++..++.|.++|+++.+|++.|..++..+|+
T Consensus        51 ~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~  128 (235)
T PRK11161         51 AGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPK  128 (235)
T ss_pred             CCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChH
Confidence            6999999999999999999999999999999999999999977654 45667999999999999999999999999984

>KOG0614|consensus

Probab=99.26  E-value=1.4e-12  Score=110.82  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=78.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      ..|++|+.|++| |++++++|++.+|.+.|.+.      ...+..+++|.+|||+++|.+.+++++|+|+++|.+|.|++
T Consensus       180 ~~~~~gs~IIre-ge~Gs~~yV~aeG~~~V~~~------g~ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR  252 (732)
T KOG0614|consen  180 VEYRAGSWIIRE-GEPGSHLYVSAEGELQVSRE------GKLLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDR  252 (732)
T ss_pred             ccccCCcEEEec-CCCCceEEEeecceEEEeeC------CeeeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHH
Confidence            799999999999 99999999999999999863      57889999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcc
Q psy8820         187 DDCSTLIDAD  196 (234)
Q Consensus       187 ~~~~~l~~~~  196 (234)
                      +.|+.++...
T Consensus       253 ~vFq~IM~~t  262 (732)
T KOG0614|consen  253 EVFQAIMMRT  262 (732)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.25  E-value=1.6e-11  Score=114.43  Aligned_cols=78  Identities=21%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      |||+++.+|+|.+|.|+++. ..+|++.+++.+++||+|||.+++.+.|+++|++|.++|+++.|+++.|..+++.+|+
T Consensus       411 qge~~~~lY~I~~G~V~i~~-~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~  488 (823)
T PLN03192        411 QNEAPDDVYIVVSGEVEIID-SEGEKERVVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQE  488 (823)
T ss_pred             CCCCCceEEEEEecEEEEEE-ecCCcceeeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhH
Confidence            68999999999999999985 4567788899999999999999999999999999999999999999999999999984

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.23  E-value=4e-11  Score=84.44  Aligned_cols=78  Identities=26%  Similarity=0.362  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc--cCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV--TSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll--~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +|++.+++|+|.+|.++++....+|++..+..+.+|++||+..++  ...++..++.|.++|+++.++.+.|.......+
T Consensus        31 ~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  110 (120)
T smart00100       31 QGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRRAASATAVALELATLLRIDFRDFLQLLQENP  110 (120)
T ss_pred             CCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCcccceEEEEEeeEEEEccCHHHHHHHHHHhH
Confidence            689999999999999999998888999999999999999999998  446888999999999999999999988877766

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.22  E-value=1e-10  Score=100.95  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=80.4

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      ++|++|++|+++ |+.++++|+|++|.++++....+|  +.++..+++|++||+.  +.+.++.++++|.++|+++.|++
T Consensus        34 ~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~g--e~~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~  108 (413)
T PLN02868         34 KRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEEE--SRPEFLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPH  108 (413)
T ss_pred             EEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCCC--cEEEEEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcH
Confidence            799999999999 999999999999999999887665  6788899999999975  67888999999999999999999


Q ss_pred             HhHHHHHhcchHHH
Q psy8820         187 DDCSTLIDADMNVT  200 (234)
Q Consensus       187 ~~~~~l~~~~p~~~  200 (234)
                      +.|..+...++-..
T Consensus       109 ~~~~~~~~~~~~~~  122 (413)
T PLN02868        109 EHCHLLSPKSIWDS  122 (413)
T ss_pred             HHHhhhcccccccc
Confidence            99999888776543

>KOG0500|consensus

Probab=99.09  E-value=2.5e-09  Score=90.44  Aligned_cols=94  Identities=16%  Similarity=0.239  Sum_probs=84.3

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee------CcceEEEEEEcCCeE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT------GEASVFTIQSRLPAT  180 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~------~~~~~~~v~A~~~~~  180 (234)
                      +-|.||+.|.+. ||.+..+|+|.+|.++|...+  |  ......+.+|++|||++++.      |..++++++.+.-+.
T Consensus       333 qvfSPgDyICrK-GdvgkEMyIVk~G~L~Vv~dD--g--~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSD  407 (536)
T KOG0500|consen  333 QVFSPGDYICRK-GDVGKEMYIVKEGKLAVVADD--G--VTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSD  407 (536)
T ss_pred             eeeCCCCeEEec-CcccceEEEEEccEEEEEecC--C--cEEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccce
Confidence            889999999999 999999999999999998643  3  56788899999999999873      567889999999999


Q ss_pred             EEEeCHHhHHHHHhcchHHHHHHHH
Q psy8820         181 IAWLPQDDCSTLIDADMNVTLKIAH  205 (234)
Q Consensus       181 ~~~i~~~~~~~l~~~~p~~~~~~~~  205 (234)
                      ++.++++++.+.++++|+-...+..
T Consensus       408 lfvLskdDl~~aL~eYP~a~~~L~~  432 (536)
T KOG0500|consen  408 LFVLSKDDLWEALSEYPDARKRLEE  432 (536)
T ss_pred             eeEeeHHHHHHHHHhCCHHHHHHHH
Confidence            9999999999999999998766653

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.04  E-value=7.6e-10  Score=95.55  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS   76 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~   76 (234)
                      +||+.+.+|+|++|.|+++....+| +..+..+++|++||+.  +.+.++.++++|.++|+++.||++.|+.+...
T Consensus        45 ~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~--l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~  117 (413)
T PLN02868         45 EGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG--LSGSVHSADVVAVSELTCLVLPHEHCHLLSPK  117 (413)
T ss_pred             CCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh--hCCCCcccEEEECCCEEEEEEcHHHHhhhccc
Confidence            6899999999999999999988887 6788999999999985  78899999999999999999999999776443

>KOG0499|consensus

Probab=99.02  E-value=5.2e-09  Score=90.33  Aligned_cols=95  Identities=14%  Similarity=0.168  Sum_probs=83.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee---CcceEEEEEEcCCeEEEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT---GEASVFTIQSRLPATIAW  183 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~---~~~~~~~v~A~~~~~~~~  183 (234)
                      +.|=+|+.|.+. |+.+..+|+|..|.|+|.-. .+|  +.++.++..|.+|||++++.   +..++++|+|...|.++.
T Consensus       553 V~yLPgDfVCkK-GeiGkEMYIIk~GqvQVlGG-p~~--~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfv  628 (815)
T KOG0499|consen  553 VLYLPGDFVCKK-GEIGKEMYIIKHGQVQVLGG-PDG--TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFV  628 (815)
T ss_pred             eeecCCceeeec-ccccceeEEeecceEEEecC-CCC--CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeE
Confidence            789999999999 99999999999999999743 343  78999999999999999983   566789999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHH
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAH  205 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~  205 (234)
                      ++++++++++..+|.-...+.+
T Consensus       629 L~KkdLneil~~YP~sq~iLrk  650 (815)
T KOG0499|consen  629 LDKKDLNEILVHYPDSQRILRK  650 (815)
T ss_pred             ecHhHHHHHHHhCccHHHHHHH
Confidence            9999999999999986544433

>KOG0498|consensus

Probab=98.87  E-value=1.7e-09  Score=97.30  Aligned_cols=78  Identities=22%  Similarity=0.198  Sum_probs=70.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee-eeccccC-CCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG-LIEMVTS-TSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG-e~~ll~~-~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+.+.+|||.+|++++..... |.+.....+++||+|| |+..... .|.++||+|.|.|++..|.+++|..++..+|
T Consensus       456 eGd~v~~myFI~rG~le~~~~~~-g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~  534 (727)
T KOG0498|consen  456 EGDPVTDMYFIVRGSLESITTDG-GGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFR  534 (727)
T ss_pred             cCCccceeEEEEeeeEEEEEccC-CceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhH
Confidence            79999999999999999887654 4678889999999999 8888866 7889999999999999999999999988887


Q ss_pred             h
Q psy8820          79 E   79 (234)
Q Consensus        79 ~   79 (234)
                      .
T Consensus       535 ~  535 (727)
T KOG0498|consen  535 R  535 (727)
T ss_pred             H
Confidence            3

>KOG0499|consensus

Probab=98.82  E-value=9.2e-09  Score=88.82  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=68.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc---cCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV---TSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP   77 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll---~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~   77 (234)
                      .||.|..+|||..|.|+|.- .++| +.++.++..|.+|||++||   .+.+|+|+|+|..-|.++++++.+++.++..+
T Consensus       564 KGeiGkEMYIIk~GqvQVlG-Gp~~-~~Vl~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~Y  641 (815)
T KOG0499|consen  564 KGEIGKEMYIIKHGQVQVLG-GPDG-TKVLVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHY  641 (815)
T ss_pred             cccccceeEEeecceEEEec-CCCC-CEEEEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhC
Confidence            48899999999999999874 4555 4778999999999999999   34589999999999999999999999999999


Q ss_pred             ch
Q psy8820          78 SE   79 (234)
Q Consensus        78 p~   79 (234)
                      |+
T Consensus       642 P~  643 (815)
T KOG0499|consen  642 PD  643 (815)
T ss_pred             cc
Confidence            96

>KOG0500|consensus

Probab=98.77  E-value=1.4e-08  Score=86.04  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeecccc------CCCceeEEEEccceeEEEeCcccccccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVT------STSRNTTVMAVRDSELAKLPEGLCDHLP   74 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~------~~~r~~tv~A~~~~~l~~i~~~~f~~l~   74 (234)
                      .||.+..+|||.+|.+.|+..  ||+ .....+++|++|||++++.      |.+|+|+++.+..|.+..++++++...+
T Consensus       344 KGdvgkEMyIVk~G~L~Vv~d--Dg~-t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL  420 (536)
T KOG0500|consen  344 KGDVGKEMYIVKEGKLAVVAD--DGV-TVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRSVGYSDLFVLSKDDLWEAL  420 (536)
T ss_pred             cCcccceEEEEEccEEEEEec--CCc-EEEEEecCCceeeeeEEEEEcCcccCCcceeeeeeeccceeeEeeHHHHHHHH
Confidence            489999999999999988764  443 5567899999999999983      5689999999999999999999999999


Q ss_pred             CCCch
Q psy8820          75 RSPSE   79 (234)
Q Consensus        75 ~~~p~   79 (234)
                      .++|+
T Consensus       421 ~eYP~  425 (536)
T KOG0500|consen  421 SEYPD  425 (536)
T ss_pred             HhCCH
Confidence            99995

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.60  E-value=9.1e-08  Score=82.66  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      |.|.+++|+|.+|.|.+...  +|  .++..+..||+||-.+++++.+....+.|.+|+.++.||++.|+.+..++|+
T Consensus        45 ~~p~~~l~vi~kG~vev~~~--~g--~v~~~~~~gdlFg~~~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~  118 (610)
T COG2905          45 GSPVHYLYVIRKGVVEVRSD--GG--EVLDRLAAGDLFGFSSLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPE  118 (610)
T ss_pred             CCCcceeEEEEeceeeEEcC--CC--eeeeeeccCccccchhhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcH
Confidence            45788999999999998764  45  4889999999999999999999999999999999999999999999999985

>KOG0501|consensus

Probab=98.21  E-value=1.5e-06  Score=75.51  Aligned_cols=95  Identities=18%  Similarity=0.188  Sum_probs=81.1

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeC--cceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTG--EASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~--~~~~~~v~A~~~~~~~~i  184 (234)
                      .+..||+.|++. |+..+.+.||++|.++|.+.      ...+..++.||+||+.---.+  ..+-++|+|++-|.+-.|
T Consensus       574 ~H~APGDLlYHt-GESvDaLcFvVsGSLEVIQD------DEVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~I  646 (971)
T KOG0501|consen  574 NHCAPGDLLYHT-GESVDALCFVVSGSLEVIQD------DEVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMI  646 (971)
T ss_pred             ccCCCcceeeec-CCccceEEEEEecceEEeec------CcEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHH
Confidence            688999999999 99999999999999999874      357889999999998633221  234578999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHH
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVL  208 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~  208 (234)
                      .++.+.+.++=+..|+..+++++.
T Consensus       647 Krd~Ll~VLdFYtAFanSFaRNl~  670 (971)
T KOG0501|consen  647 KRDKLLKVLDFYTAFANSFARNLT  670 (971)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhcee
Confidence            999999999999988888887654

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=98.07  E-value=0.00013  Score=56.53  Aligned_cols=97  Identities=12%  Similarity=0.090  Sum_probs=76.2

Q ss_pred             eeecCCCEE-EEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         107 EHIPGGTCL-VREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i-~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      ..+++|..+ ... ......++++++|.+.+. . .|   ...+.+.....+||....+.+....+.++|.++|++..+|
T Consensus        25 ~~~~~~~~~i~~~-~~~~~~~~ll~~G~vsir-r-~d---~ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~   98 (207)
T PRK11832         25 FEFNNEKQVIFSS-DVNNEDTFVILEGVISLR-R-EE---NVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLP   98 (207)
T ss_pred             EecCCCcEEeccc-cCCCceEEEEEeceEEEE-e-cC---CeEEEeccCCeEeecccccCCCCceEEEEEcCccEEEEee
Confidence            578888886 555 455578999999999994 3 23   3677788888999988777776667899999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKR  210 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~  210 (234)
                      .++|.++++++. +...+++.+.-.
T Consensus        99 ~~~~~~iie~~~-LW~~~~~~l~~~  122 (207)
T PRK11832         99 AKQTITLIEQNQ-LWRDAFYWLAWQ  122 (207)
T ss_pred             HHHHHHHHHHhc-hHHHHHHHHHHH
Confidence            999999999886 555555555443

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=97.90  E-value=0.00044  Score=50.37  Aligned_cols=103  Identities=12%  Similarity=0.154  Sum_probs=79.1

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeee-----eCcceEEEEEEcCCeE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVL-----TGEASVFTIQSRLPAT  180 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l-----~~~~~~~~v~A~~~~~  180 (234)
                      +..+++|+.-.-|+-.+.+.+-++++|.++|...      ...+..+.|-++...-.-.     .+..--.|++|.++|.
T Consensus        30 i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~------g~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cr  103 (153)
T PF04831_consen   30 IRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCD------GRFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCR  103 (153)
T ss_pred             EEEecCCceeeecCCcccceEeEEEcCcEEEEEC------CEeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcE
Confidence            4689999999988457778999999999999863      3567777887776543222     2333457899999999


Q ss_pred             EEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         181 IAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       181 ~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      .+.++++.+..++.++|-+..-+...+.+.+.+-
T Consensus       104 yl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~K  137 (153)
T PF04831_consen  104 YLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEK  137 (153)
T ss_pred             EEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988766655555555544

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=97.21  E-value=0.0021  Score=49.87  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=58.8

Q ss_pred             CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +.+|+|.+|.+.+. . .++  ..+....+--+||-...+.+.......+|.++|++..+|.+.|..++.+..
T Consensus        42 ~~~~ll~~G~vsir-r-~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~~c~~~~i~~~~~~~iie~~~  110 (207)
T PRK11832         42 EDTFVILEGVISLR-R-EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQTITLIEQNQ  110 (207)
T ss_pred             ceEEEEEeceEEEE-e-cCC--eEEEeccCCeEeecccccCCCCceEEEEEcCccEEEEeeHHHHHHHHHHhc
Confidence            56999999999984 3 455  777888899999988888777777899999999999999999998887754

>KOG0501|consensus

Probab=97.18  E-value=9.6e-05  Score=64.60  Aligned_cols=67  Identities=19%  Similarity=0.181  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC--CceeEEEEccceeEEEeCccccccc
Q psy8820           2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST--SRNTTVMAVRDSELAKLPEGLCDHL   73 (234)
Q Consensus         2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~--~r~~tv~A~~~~~l~~i~~~~f~~l   73 (234)
                      |+.-|++.+|++|+++|...+     .+++.++.||+||+.-.-...  ...|+|+|++.|.+-.|.|+.+...
T Consensus       586 GESvDaLcFvVsGSLEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~V  654 (971)
T KOG0501|consen  586 GESVDALCFVVSGSLEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKV  654 (971)
T ss_pred             CCccceEEEEEecceEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHH
Confidence            778899999999999998764     688999999999987655442  5668999999999999988876544

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=96.53  E-value=0.018  Score=42.14  Aligned_cols=71  Identities=17%  Similarity=0.098  Sum_probs=54.8

Q ss_pred             CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeecc-----ccCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEM-----VTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP   77 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~l-----l~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~   77 (234)
                      .+.|.+-++++|+++|+..   |  ..+..+.|-++.--...     -.+.....|++|.++|..+.++|+.+..++...
T Consensus        45 T~~drLSlLLsGr~~Vs~~---g--~fLH~I~p~qFlDSPEW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~  119 (153)
T PF04831_consen   45 TPIDRLSLLLSGRMRVSCD---G--RFLHYIYPYQFLDSPEWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKD  119 (153)
T ss_pred             cccceEeEEEcCcEEEEEC---C--EeeEeecccccccChhhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhC
Confidence            3678999999999999875   3  55666666655432222     245567899999999999999999999988887


Q ss_pred             c
Q psy8820          78 S   78 (234)
Q Consensus        78 p   78 (234)
                      |
T Consensus       120 ~  120 (153)
T PF04831_consen  120 P  120 (153)
T ss_pred             H
Confidence            7

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PRK11171 hypothetical protein; Provisional

Probab=94.14  E-value=2.6  Score=34.31  Aligned_cols=136  Identities=13%  Similarity=0.181  Sum_probs=75.9

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-CchHHHH
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSEQELI   83 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~~~l~   83 (234)
                      .+.+++|++|++.+...   |+   ...+.+||++   .+=.+.++.......++++++.+ ...|..+-.. .|. .+.
T Consensus        83 ~eE~~~VlsG~l~v~~~---g~---~~~L~~GDsi---~~p~~~~H~~~N~g~~~a~~l~v-~~~y~~~~~~~~p~-~~~  151 (266)
T PRK11171         83 AETFLFVVEGEITLTLE---GK---THALSEGGYA---YLPPGSDWTLRNAGAEDARFHWI-RKRYEPVEGHEAPE-AFV  151 (266)
T ss_pred             ceEEEEEEeCEEEEEEC---CE---EEEECCCCEE---EECCCCCEEEEECCCCCEEEEEE-EcCCeEcCCCCCCC-eEe
Confidence            36799999999988753   43   3469999885   12245566665555667777766 2333322221 121 011


Q ss_pred             HHHHHHHHHH-hC-----------CCCCc-cc--cceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820          84 HSSKREFMEQ-LG-----------VKDFS-GL--DIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH  148 (234)
Q Consensus        84 ~~~~~~l~~~-l~-----------~~~~~-~l--~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~  148 (234)
                      ... ..+... +.           +...+ ..  ......+++|..+-........+.++|++|...+....       .
T Consensus       152 ~~~-~d~~~~~~~g~~g~~~~~~~~~p~~~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~~~-------~  223 (266)
T PRK11171        152 GNE-SDIEPIPMPGTDGVWATTRLVDPEDLRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRLNN-------D  223 (266)
T ss_pred             cch-hcccccccCCCCCeEEEEEeeCchhcCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEECC-------E
Confidence            111 111000 00           00101 11  11227889998877631566779999999999997532       2


Q ss_pred             EEEECCCceEE
Q psy8820         149 LFTAFPGDMIG  159 (234)
Q Consensus       149 ~~~~~~g~~~G  159 (234)
                      ...+.+||++-
T Consensus       224 ~~~l~~GD~i~  234 (266)
T PRK11171        224 WVEVEAGDFIW  234 (266)
T ss_pred             EEEeCCCCEEE
Confidence            34678999654

>KOG3542|consensus

Probab=93.52  E-value=0.14  Score=46.33  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEE-EcCCeEEEEeCH
Q psy8820         108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQ-SRLPATIAWLPQ  186 (234)
Q Consensus       108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~-A~~~~~~~~i~~  186 (234)
                      --.+|++|... |+.-+.+++|++|.|++...+  | +..   .+.-|+.||...-...+-..--.+ -+.||+...|..
T Consensus       309 Ve~AGtivL~d-geeLDSWsVIlNG~VEv~~Pd--G-k~e---~l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVciaq  381 (1283)
T KOG3542|consen  309 VEDAGTIVLAD-GEELDSWSVILNGCVEVVKPD--G-KRE---ELKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQ  381 (1283)
T ss_pred             HhhcCeEEecC-CcccceeEEEecceEEEecCC--C-ceE---EeecccccCCCCCcchhhhhhhhheecccceEEEeeh
Confidence            34789999999 999999999999999998754  4 222   345688888644332221111123 378899999999


Q ss_pred             HhHHHHHhcc
Q psy8820         187 DDCSTLIDAD  196 (234)
Q Consensus       187 ~~~~~l~~~~  196 (234)
                      .+|-.++.+-
T Consensus       382 qDycrIln~v  391 (1283)
T KOG3542|consen  382 QDYCRILNTV  391 (1283)
T ss_pred             hhHHHHHHHH
Confidence            9988777653

>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha]

Probab=93.51  E-value=0.038  Score=22.63  Aligned_cols=12  Identities=42%  Similarity=0.966  Sum_probs=10.8

Q ss_pred             ceeeeccCcccC
Q psy8820         223 DWVFLEGGQAVY  234 (234)
Q Consensus       223 ~~~~~~~~~~~~  234 (234)
                      .|+.++.|||+|
T Consensus         2 hWL~~~~GqP~Y   13 (13)
T PF04648_consen    2 HWLRLSPGQPMY   13 (13)
T ss_pred             cceeccCCCcCC
Confidence            589999999998

The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region

>KOG3542|consensus

Probab=93.23  E-value=0.092  Score=47.39  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEE-EEccceeEEEeCccccccccC
Q psy8820           2 YDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTV-MAVRDSELAKLPEGLCDHLPR   75 (234)
Q Consensus         2 Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv-~A~~~~~l~~i~~~~f~~l~~   75 (234)
                      |+.-|+||+|+.|.|+|+.  ++|+...   +.-|+.||--+-...+-...-+ +-+.||+...|...+|.+++.
T Consensus       320 geeLDSWsVIlNG~VEv~~--PdGk~e~---l~mGnSFG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln  389 (1283)
T KOG3542|consen  320 GEELDSWSVILNGCVEVVK--PDGKREE---LKMGNSFGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILN  389 (1283)
T ss_pred             CcccceeEEEecceEEEec--CCCceEE---eecccccCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHH
Confidence            6778999999999999886  5676554   7789999977665443322222 346899999999988877653

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=91.92  E-value=2.4  Score=34.43  Aligned_cols=133  Identities=11%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccC-CCchHHHHH
Q psy8820           6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPR-SPSEQELIH   84 (234)
Q Consensus         6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~-~~p~~~l~~   84 (234)
                      +.+.+|++|++.+...   |+   ...+.+||++=   +=.+.++.......++++++.+ +..|+.+-. ..|. ....
T Consensus        81 ee~iyVl~G~l~v~~~---g~---~~~L~~Gd~~y---~pa~~~H~~~N~~~~~a~~l~v-~k~y~~~~g~~~~~-~vvg  149 (260)
T TIGR03214        81 ETFLFVISGEVNVTAE---GE---THELREGGYAY---LPPGSKWTLANAQAEDARFFLY-KKRYQPVEGLHAPE-LVVG  149 (260)
T ss_pred             EEEEEEEeCEEEEEEC---CE---EEEECCCCEEE---ECCCCCEEEEECCCCCEEEEEE-EeeeEEcCCCCCCC-eeec
Confidence            6899999999988753   32   24699999862   2234455554445556666655 344444433 2221 0000


Q ss_pred             HHHHHHHHH-h----------CCC-CCc-cccceeeeecCCCEEE-EecCCCCceEEEEEeCeEEEEEecCCCCccEEEE
Q psy8820          85 SSKREFMEQ-L----------GVK-DFS-GLDIRVEHIPGGTCLV-REEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF  150 (234)
Q Consensus        85 ~~~~~l~~~-l----------~~~-~~~-~l~~~~~~~~~g~~i~-~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~  150 (234)
                      .. ..+... +          .++ +.. -+..++.++++|..+- .+ -....+.++|++|...+...   |    ...
T Consensus       150 ~~-~dv~~~~~~g~~~~~~~~llp~~~~~~~~~~~~~~~PG~~~~~~~-~H~~eh~~yiL~G~G~~~~~---g----~~~  220 (260)
T TIGR03214       150 NE-KDIEPEPYEGMDDVILTTLLPKELAFDMNVHILSFEPGASHPYIE-THVMEHGLYVLEGKGVYNLD---N----NWV  220 (260)
T ss_pred             CH-HHCCccccCCCCcEEEEEeCchhcCCCcEEEEEEECCCcccCCcc-cccceeEEEEEeceEEEEEC---C----EEE
Confidence            00 000000 0          011 000 1122337889998884 34 44566888999999988642   2    234


Q ss_pred             EECCCceE
Q psy8820         151 TAFPGDMI  158 (234)
Q Consensus       151 ~~~~g~~~  158 (234)
                      .+.+||++
T Consensus       221 ~V~~GD~i  228 (260)
T TIGR03214       221 PVEAGDYI  228 (260)
T ss_pred             EecCCCEE
Confidence            57888864

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=91.63  E-value=8  Score=33.14  Aligned_cols=34  Identities=26%  Similarity=0.256  Sum_probs=26.9

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      +..+.+|++|++++...+.+|+.. ...+++||+|
T Consensus        87 ~~E~~yVl~G~~~v~~~d~~g~~~-~~~L~~GD~~  120 (367)
T TIGR03404        87 EAEWAYVLYGSCRITAVDENGRNY-IDDVGAGDLW  120 (367)
T ss_pred             CceEEEEEeeEEEEEEEcCCCcEE-EeEECCCCEE
Confidence            457999999999999876666543 3489999987

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=90.41  E-value=0.58  Score=30.04  Aligned_cols=30  Identities=23%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      .+.+..|++|++.+...  +|..   ..+++||.|
T Consensus        25 ~~E~~~vleG~v~it~~--~G~~---~~~~aGD~~   54 (74)
T PF05899_consen   25 EDEFFYVLEGEVTITDE--DGET---VTFKAGDAF   54 (74)
T ss_dssp             SEEEEEEEEEEEEEEET--TTEE---EEEETTEEE
T ss_pred             CCEEEEEEEeEEEEEEC--CCCE---EEEcCCcEE
Confidence            37788999999988753  6644   459999987

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=89.64  E-value=2.1  Score=31.93  Aligned_cols=57  Identities=18%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCcc
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEG   68 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~   68 (234)
                      +++.+|.+++|.+.+-.... |+.+ .-.+++||+|    ++ .+.|++.  ++..+|.++.|.+.
T Consensus        47 ~tdE~FyqleG~~~l~v~d~-g~~~-~v~L~eGd~f----lvP~gvpHsP--~r~~~t~~LvIE~~  104 (159)
T TIGR03037        47 PGEEFFYQLKGEMYLKVTEE-GKRE-DVPIREGDIF----LLPPHVPHSP--QRPAGSIGLVIERK  104 (159)
T ss_pred             CCceEEEEEcceEEEEEEcC-CcEE-EEEECCCCEE----EeCCCCCccc--ccCCCcEEEEEEeC
Confidence            47899999999998866543 4322 3569999887    34 2333332  33578888888654

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>KOG2378|consensus

Probab=87.84  E-value=0.21  Score=43.01  Aligned_cols=42  Identities=14%  Similarity=0.315  Sum_probs=36.8

Q ss_pred             CCcEeeeeccccCCCceeEEEEc-cceeEEEeCccccccccCC
Q psy8820          35 KGDLVGLIEMVTSTSRNTTVMAV-RDSELAKLPEGLCDHLPRS   76 (234)
Q Consensus        35 ~G~~fGe~~ll~~~~r~~tv~A~-~~~~l~~i~~~~f~~l~~~   76 (234)
                      .||-||-+++..+.||.||+..- .+|.++.+++..|+.++.+
T Consensus         1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~   43 (573)
T KOG2378|consen    1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHD   43 (573)
T ss_pred             CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHh
Confidence            49999999999999999997655 5699999999999988654

>smart00835 Cupin_1 Cupin

Probab=87.10  E-value=4.6  Score=29.46  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCc
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPE   67 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~   67 (234)
                      .+.+++|++|+..+.....+|++.....+.+||.|=.   -.+.++.......+++.++.++-
T Consensus        51 ~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~i---p~g~~H~~~n~~~~~~~~l~~~~  110 (146)
T smart00835       51 ATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVV---PQGHPHFQVNSGDENLEFVAFNT  110 (146)
T ss_pred             CCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEE---CCCCEEEEEcCCCCCEEEEEEec
Confidence            5679999999999987766666777788999998621   12233333333345566665533

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=86.32  E-value=4.1  Score=30.92  Aligned_cols=58  Identities=14%  Similarity=0.216  Sum_probs=38.9

Q ss_pred             CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCcc
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEG   68 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~   68 (234)
                      ++++.+|.+++|.+.+...+ +|+. ....+++||+|    ++ .+.|++-  ++..+|..+.|.+.
T Consensus        52 ~~tdE~FyqleG~~~l~v~d-~g~~-~~v~L~eGd~f----llP~gvpHsP--~r~~~tv~LviE~~  110 (177)
T PRK13264         52 DPGEEFFYQLEGDMYLKVQE-DGKR-RDVPIREGEMF----LLPPHVPHSP--QREAGSIGLVIERK  110 (177)
T ss_pred             CCCceEEEEECCeEEEEEEc-CCce-eeEEECCCCEE----EeCCCCCcCC--ccCCCeEEEEEEeC
Confidence            46789999999999887764 4432 23468999887    44 2334433  33578888888544

>smart00835 Cupin_1 Cupin

Probab=84.48  E-value=13  Score=26.99  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             eeecCCCEEEEecCC-CCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEe
Q psy8820         107 EHIPGGTCLVREEVV-EDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGG  160 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~-~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~  160 (234)
                      ..+++|...-.. -. ....+++|++|...+.....++ ++.....+.+||.+-.
T Consensus        35 ~~i~pg~~~~~h-~H~~~~e~~~Vl~G~~~~~~~~~~~-~~~~~~~l~~GD~~~i   87 (146)
T smart00835       35 VNLEPGGMLPPH-YHPRATELLYVVRGEGRVGVVDPNG-NKVYDARLREGDVFVV   87 (146)
T ss_pred             EEecCCcCcCCe-eCCCCCEEEEEEeCeEEEEEEeCCC-CeEEEEEecCCCEEEE
Confidence            577888875544 32 3568999999999998765433 4667778999997643

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=83.54  E-value=8.1  Score=23.78  Aligned_cols=44  Identities=25%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             eeecCCCEEEEecCCCCc-eEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820         107 EHIPGGTCLVREEVVEDN-KLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI  158 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~-~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~  158 (234)
                      ..+++|+..-.. -.... .+++|++|.+.+.. +  +  +  ...+++||.+
T Consensus         3 ~~~~pG~~~~~h-~H~~~~e~~~vl~G~~~~~~-~--~--~--~~~l~~Gd~~   47 (71)
T PF07883_consen    3 VTLPPGGSIPPH-RHPGEDEFFYVLSGEGTLTV-D--G--E--RVELKPGDAI   47 (71)
T ss_dssp             EEEETTEEEEEE-EESSEEEEEEEEESEEEEEE-T--T--E--EEEEETTEEE
T ss_pred             EEECCCCCCCCE-ECCCCCEEEEEEECCEEEEE-c--c--E--EeEccCCEEE
Confidence            367788866655 44555 89999999999983 2  2  1  4567888854

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=82.71  E-value=8.2  Score=23.75  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             EEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEE
Q psy8820           7 STYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAK   64 (234)
Q Consensus         7 ~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~   64 (234)
                      .+++|++|++.+..   +|+   ...+++||.+    .+ .+.++......-+++.++.
T Consensus        21 e~~~vl~G~~~~~~---~~~---~~~l~~Gd~~----~i~~~~~H~~~n~~~~~~~~l~   69 (71)
T PF07883_consen   21 EFFYVLSGEGTLTV---DGE---RVELKPGDAI----YIPPGVPHQVRNPGDEPARFLV   69 (71)
T ss_dssp             EEEEEEESEEEEEE---TTE---EEEEETTEEE----EEETTSEEEEEEESSSEEEEEE
T ss_pred             EEEEEEECCEEEEE---ccE---EeEccCCEEE----EECCCCeEEEEECCCCCEEEEE
Confidence            79999999998873   243   3458999864    22 3344444444444555444

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	234
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	3e-08
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	2e-06
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	2e-07
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	2e-04
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	3e-07
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	3e-07
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	2e-04
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	9e-07
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	1e-06
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	2e-05
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	2e-06
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	4e-04
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	3e-06
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	4e-05
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	3e-06
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	1e-04
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	5e-06
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	6e-06
3b02_A	195	Transcriptional regulator, CRP family; structural	7e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-05
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	1e-05
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	1e-05
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	1e-05
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	2e-04
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	1e-05
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	2e-05
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	2e-05
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	3e-05
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	4e-05
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	4e-05
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	4e-05
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	6e-05
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	7e-05
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	8e-05
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-04

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           D  D   ++LTG +  +K + +   +  A+   G ++G + M+    R+ + +A   ++ 
Sbjct: 78  DPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDF 137

Query: 63  AKLP-EGLCDHLPRSPS 78
           A L  + L   L   P 
Sbjct: 138 AVLSRDALYQLLANMPK 154

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 23/157 (14%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 80  QELIHSSK-REFMEQL-----GVKDFSGLD----------IRVEHIPGGTCLVREEVVED 123
            +L+H     ++ E++      +K F              ++    P    L+ E   + 
Sbjct: 22  PDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEG--DP 79

Query: 124 NKLIYVIA-GSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA 182
              + +I  G + + +   +      +     G +IG ++++ G     +  + LP   A
Sbjct: 80  GDYLLLILTGEVNVIKDIPNK-GIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFA 138

Query: 183 WLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD 219
            L +D    L+     +  K+   +L+ ++   R+  
Sbjct: 139 VLSRDALYQLLANMPKLGNKVLIRLLQLLTARFRESY 175

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 8/104 (7%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           +++ + ++V+ G ++  +   +G     + +++G+  G    + +T    +  AV   E+
Sbjct: 50  EKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEV 109

Query: 63  AKLP-EGLCDHLPRSP--SEQELIHSSKR-----EFMEQLGVKD 98
             +P       + R P      L  +          +EQL  + 
Sbjct: 110 MHIPSPVFVSLMRRDPEICISILATTFGHLHSLVAQLEQLKAQT 153

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 16/131 (12%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIA-GSLFITQKSSDGS-ND 146
              L                   G  L  +E  E  + I+V+  G + + + +  GS   
Sbjct: 19  IRSLPEQHVDALLSQAVWRSYDRGETLFLQE--EKAQAIHVVIDGWVKLFRMTPTGSEAV 76

Query: 147 VHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHS 206
           V +FT   G+  G    L       + ++  P  +  +P     +L+  D  + + I  +
Sbjct: 77  VSVFT--RGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILAT 134

Query: 207 VLKRMSPFVRQ 217
               +   V Q
Sbjct: 135 TFGHLHSLVAQ 145

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           D  ++ + +  G+++ ++    G+         G   G+       + ++T +AV +S++
Sbjct: 49  DIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKV 108

Query: 63  AKLP----EGLCDHLPR 75
             +P    E L      
Sbjct: 109 LAIPVEAIEALLKGNTS 125

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDS 60
           + D  D  Y+V  G+++  +T   G+    A     +L+G + +     R  T  A+ + 
Sbjct: 42  EGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEV 101

Query: 61  ELAKLP-EGLCDHLPRSPS 78
           +L  L    L   L   P 
Sbjct: 102 KLLALGHGDLQPWLNVRPE 120

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 14/124 (11%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIA-GSLFITQKSSDGSNDV 147
           F+ LD          +    +  G  L  E   +    +YV+  G + + + S DG  + 
Sbjct: 13  FAALDDEQSAELRASMSEVTLARGDTLFHEG--DPGDRLYVVTEGKVKLHRTSPDG-REN 69

Query: 148 HLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSV 207
            L    P ++IG L++        T  +     +  L   D    ++    V   +  +V
Sbjct: 70  MLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAV 129

Query: 208 LKRM 211
            +R+
Sbjct: 130 ARRL 133

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEE-AEYSKGDLVGLIEMVTSTSRNTTVMAVRD 59
           Q +  D  YI+  G    ++     +   E       D  G I ++ +  R  TV+A   
Sbjct: 285 QGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGP 344

Query: 60  SELAKLP 66
            +  KL 
Sbjct: 345 LKCVKLD 351

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 5e-07
 Identities = 32/228 (14%), Positives = 72/228 (31%), Gaps = 68/228 (29%)

Query: 30  EAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQE-------- 81
           E +Y   D++ + E   +   N     V+D   + L +   DH+  S             
Sbjct: 13  EHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 82  LIHSSKR---EFMEQLGVKDFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQ 138
           L+   +    +F+E++   ++  L   ++       ++    +E    +Y          
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---------- 120

Query: 139 KSSDGSNDVHLFTAF-------------------PGD------MIG-GLAVLTGEA-SVF 171
                 ND  +F  +                   P        ++G G   +  +    +
Sbjct: 121 ------NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 172 TIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD 219
            +Q ++   I WL   +C++              +VL+ +   + Q D
Sbjct: 175 KVQCKMDFKIFWLNLKNCNS------------PETVLEMLQKLLYQID 210

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 1   QYDRSDSTYIVLTGRLR-SVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRD 59
           Q +  D  +I+L G      +  E+ +  E       D  G I ++ +  +  TV+A   
Sbjct: 194 QGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGP 253

Query: 60  SELAKLP 66
            +  KL 
Sbjct: 254 LKCVKLD 260

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 1   QYDRSDSTYIVLTGRLRSVKT------LESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTV 54
           Q D +DS +IV +G ++          +E     E A   +G   G + +VT+  R  + 
Sbjct: 304 QGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASA 363

Query: 55  MAVRDSELAKLPEGLCDHLPRSPSEQELIHSSKREFMEQL 94
            A+   +   +     + L       E++  +   + EQL
Sbjct: 364 HAIGTVKCLAMDVQAFERLLG--PCMEIMKRNIATYEEQL 401

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 23/172 (13%), Positives = 53/172 (30%), Gaps = 14/172 (8%)

Query: 74  PRSPSEQELIHS--SKREFMEQLGVKDFSGL--DIRVEHIPGGTCLVREEVVEDNKLIYV 129
           P++  ++  +          + L  +  S +   +  + +  G  ++ +    DN   YV
Sbjct: 134 PKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDN--FYV 191

Query: 130 IAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDC 189
           I    F      DG     +         G LA++       TI +  P  +  L +   
Sbjct: 192 IDRGTFDIYVKCDG-VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTF 250

Query: 190 STLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY 234
             +I  +     K+  S ++ +            +    +       G+ + 
Sbjct: 251 RRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQII 302

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
              ++ ++V TG +R  +    G+ +   +     +VG   ++    R+ +V A+     
Sbjct: 45  AEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRT 104

Query: 63  AKLP 66
             L 
Sbjct: 105 LMLH 108

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 15/124 (12%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIA-GSLFITQKSSDGSNDV 147
           F  +           +   +      +V ++   + + ++++  G + +++ S  G  + 
Sbjct: 14  FQNVPEDAMREALKVVTERNFQPDELVVEQD--AEGEALHLVTTGVVRVSRVSLGG-RER 70

Query: 148 HLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSV 207
            L   +   ++G  AVL  +    ++++  P     L ++    ++     V   +A  +
Sbjct: 71  VLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEML 130

Query: 208 LKRM 211
            +R+
Sbjct: 131 ARRV 134

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 8/64 (12%), Positives = 25/64 (39%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           +  D  YI+++G+++  +    G+          D+ G + +     R ++   + +   
Sbjct: 45  EPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRA 104

Query: 63  AKLP 66
             + 
Sbjct: 105 VSMD 108

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH 148
           F G++          ++    P G  +  E     ++L  +I+G + I +++ DG  +  
Sbjct: 14  FQGVEPSAIAALTKQLQPVDFPRGHTVFAEGE-PGDRLYIIISGKVKIGRRAPDG-RENL 71

Query: 149 LFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVL 208
           L    P DM G L++        +  +        + +D   + I     ++ ++   + 
Sbjct: 72  LTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLA 131

Query: 209 KRM 211
           +R+
Sbjct: 132 RRL 134

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 35/66 (53%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDS 60
           Q D   + Y+V +G++R  +T   G+ +  A    G+L G + ++    R+ + +AV D+
Sbjct: 36  QGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDT 95

Query: 61  ELAKLP 66
           EL  L 
Sbjct: 96  ELLALF 101

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 12/123 (9%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH 148
           F GL            +    P G  +  +       L  V +G + + +    G  +  
Sbjct: 7   FHGLAPEEVDLALSYFQRRLYPQGKPIFYQGD-LGQALYLVASGKVRLFRTHLGG-QERT 64

Query: 149 LFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVL 208
           L    PG++ G +++L       +  +     +  L ++D   LI     V   +A  + 
Sbjct: 65  LALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLA 124

Query: 209 KRM 211
           +R+
Sbjct: 125 RRL 127

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNT-TVMAVRD 59
           Q + + + Y +++G ++  +    G+ K     ++ +      M   T     T  AV  
Sbjct: 49  QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVP 108

Query: 60  SELAKLP-EGLCDHLPRSPS 78
           S+L +   +     L  +  
Sbjct: 109 SQLFRFSNKAYLRQLQDNTP 128

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSR-NTTVMAVRDSE 61
           D  +   I+L G L++    E+GK  E  E     ++    + +S  R    V+A  +S+
Sbjct: 38  DPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSK 97

Query: 62  LAKLP----EGLCDHLPR 75
           +  +P      L      
Sbjct: 98  ILSIPKEVFLDLLMKDRE 115

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 44.5 bits (106), Expect = 7e-06
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
          + + + Y +  G +R V+ L  G+         GD  G   +        T  A+ ++ +
Sbjct: 15 EEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKA-YRYTAEAMTEAVV 73

Query: 63 AKLP 66
            L 
Sbjct: 74 QGLE 77

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEE-AEYSKGDLVGLIEMVTSTSRNTTVMAVRDSE 61
            R D+ +I+  G++   +     +         KGD  G   +     R   V+A     
Sbjct: 196 ARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVT 255

Query: 62  LAKLP 66
              + 
Sbjct: 256 CLVID 260

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNT-TVMAVRD 59
           Q + + + Y +++G ++  +    G+ K     ++ +      M   T     T  AV  
Sbjct: 46  QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVP 105

Query: 60  SELAKLP-EGLCDHLPRSPS-EQELIHS-SKR-----EFMEQLGVKD 98
           S+L +   +     L  +      L+   S R     + +E L +K+
Sbjct: 106 SQLFRFSNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIETLSLKN 152

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSE 61
           D + + Y V++G +  +   +  +      +  G+ VG + +   + +R   +      E
Sbjct: 50  DPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCE 109

Query: 62  LAKLP 66
           LA++ 
Sbjct: 110 LAEIS 114

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEE---AEYSKGDLVGLIEMVTSTSRNTTVMAVRD 59
            ++D+  ++L G +    +                 G + G+  ++      ++  A + 
Sbjct: 45  SKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKP 104

Query: 60  SELAKLP 66
             +  + 
Sbjct: 105 VRVVDIN 111

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 13/127 (10%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 99  FSGLD----------IRVEHIPGGTCLVREEVVEDNKLIYVIA-GSLFITQKSSDGSND- 146
           F+ L              +  P G+ + +E    DN  + ++  G + +   +    +  
Sbjct: 14  FASLTDEQLKDIALISEEKSFPTGSVIFKENSKADN--LMLLLEGGVELFYSNGGAGSAA 71

Query: 147 -VHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAH 205
              + +  PG + G  +++       + ++  P  +  +       + + +  +   + +
Sbjct: 72  NSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMN 131

Query: 206 SVLKRMS 212
           +V   + 
Sbjct: 132 NVAAAVL 138

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSE 61
          +++++ Y ++ G +  +   E GK    +  ++GD +G + +      R+  V A    E
Sbjct: 35 EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACE 94

Query: 62 LAKLP 66
          +A++ 
Sbjct: 95 VAEIS 99

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 2/66 (3%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAV--RDS 60
          D  +    +  G  +     E+G       Y    ++    + T TS     + V    +
Sbjct: 34 DPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQA 93

Query: 61 ELAKLP 66
              + 
Sbjct: 94 TAYVIK 99

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSE 61
           +++++ Y ++ G +  +   E GK    +  ++GD +G + +      R+  V A    E
Sbjct: 85  EKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACE 144

Query: 62  LAKLP 66
           +A++ 
Sbjct: 145 VAEIS 149

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTS--TSRNTTVMAVRDS 60
           D ++  Y +L G ++  +  E+G+    A   +  + G++ ++T   + R    +A    
Sbjct: 59  DPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPV 118

Query: 61  ELAKLP 66
           EL   P
Sbjct: 119 ELLSAP 124

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV--TSTSRNTTVMAVRDS 60
                  +V +G+LR+    + G+          D+  L       S     T+ A +D+
Sbjct: 42  MDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDT 101

Query: 61  ELAKLP-EGLCDHLPRSPSEQELIHS--SKR-----EFMEQLGVKDFSG 101
           +L  +P E     +  S       +   + R       +EQ+  K    
Sbjct: 102 DLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIEQIMWKSLDK 150

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 18/64 (28%), Gaps = 1/64 (1%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
             D  Y VL G +R     E G          G   G   +     R     A  D  L
Sbjct: 23 GPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGEEALFGQE-RIYFAEAATDVRL 81

Query: 63 AKLP 66
            LP
Sbjct: 82 EPLP 85

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 3  DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS----RNTTVMAVR 58
          DR ++ + ++ G +  +   + G+       + GD  G + +         R+  V A  
Sbjct: 29 DRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKV 88

Query: 59 DSELAKLP 66
          + E+A++ 
Sbjct: 89 ECEVAEIS 96

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           +   S   ++ G+++     E G  K         L+G    +  T  N    A+  +  
Sbjct: 48  EEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIG---KLYPTGNNIYATAMEPTRT 104

Query: 63  AKLP 66
               
Sbjct: 105 CWFS 108

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 5/113 (4%)

Query: 105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVL 164
            +     G+ ++     E   +I+++ G + +     DG ++  L+ A    +IG L   
Sbjct: 33  LIRDFAKGSAVIMPGE-EITSMIFLVEGKIKLDIIFEDG-SEKLLYYAGGNSLIGKLYPT 90

Query: 165 TGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ 217
                   ++   P    W  +    T+   D ++  +I  + L +++ + RQ
Sbjct: 91  GNNIYATAME---PTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQ 140

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 5/67 (7%), Positives = 17/67 (25%), Gaps = 1/67 (1%)

Query: 1   QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNT-TVMAVRD 59
             +       +L G +  V   +        +     L+    +    +    + +A  +
Sbjct: 57  SGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTE 116

Query: 60  SELAKLP 66
                + 
Sbjct: 117 VHTVCIS 123

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 3   DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSEL 62
           D+ ++ Y++  G +   K  +        +    D  G + ++    R  TV A + +++
Sbjct: 164 DQGENFYLIEYGAVDVSKKGQ----GVINKLKDHDYFGEVALLNDLPRQATVTATKRTKV 219

Query: 63  AKL 65
           A L
Sbjct: 220 ATL 222

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	234
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	100.0
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	100.0
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	100.0
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	100.0
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.98
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.95
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.95
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.82
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.8
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.79
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.79
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.77
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.76
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.76
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.75
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.75
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.75
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.74
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.74
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.74
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.74
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.74
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.73
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.73
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.73
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.72
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.72
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.71
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.71
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.71
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.7
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.7
3b02_A	195	Transcriptional regulator, CRP family; structural	99.69
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.68
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.68
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.68
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.68
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.67
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.67
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.67
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.66
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.65
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.65
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.65
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.63
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.63
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.62
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.62
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.61
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.61
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.61
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.59
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.59
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.59
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.59
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.58
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.58
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.58
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.58
3b02_A	195	Transcriptional regulator, CRP family; structural	99.57
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.56
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.56
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.56
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.55
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.55
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.55
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.54
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.53
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.52
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.52
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.51
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.51
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.5
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.48
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.48
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.47
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.47
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.47
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.46
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.46
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.46
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.44
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.43
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.41
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.4
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.37
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.35
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.3
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.15
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.13
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	96.92
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	94.95
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	92.74
1sfn_A	246	Conserved hypothetical protein; structural genomic	92.63
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	92.29
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	92.15
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	89.62
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	88.53
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	87.62
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	86.6
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	86.57
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	86.39
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	86.22
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	85.48
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	84.55
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	80.85
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	80.41
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	80.29

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=100.00  E-value=1.4e-34  Score=237.61  Aligned_cols=208  Identities=15%  Similarity=0.165  Sum_probs=173.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||+++.+|+|++|.|+++.   +|  ..+..+++|++|||.+++.+.||++|++|.++|+++.|+++.|..++...|. 
T Consensus        76 ~G~~~~~~yiI~~G~v~v~~---~g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~-  149 (299)
T 3shr_A           76 EGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGL-  149 (299)
T ss_dssp             TTCBCCCEEEEEESCEEEEE---TT--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHH-
T ss_pred             CCCcCceEEEEEEEEEEEEE---CC--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHH-
Confidence            79999999999999999965   34  6788999999999999999999999999999999999999999999888773 


Q ss_pred             HHHHHHHHHHHH---HhCCCCC--ccccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEec-CCCCccEEEEEE
Q psy8820          81 ELIHSSKREFME---QLGVKDF--SGLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS-SDGSNDVHLFTA  152 (234)
Q Consensus        81 ~l~~~~~~~l~~---~l~~~~~--~~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~-~~g~~~~~~~~~  152 (234)
                      .........+..   ...+.+.  ..+..  ..+.|++|++|+++ |+.++.+|+|++|.++++... .+| ++..+..+
T Consensus       150 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~-G~~~~~~yiI~~G~v~~~~~~~~~g-~~~~~~~l  227 (299)
T 3shr_A          150 IKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQ-GARGDTFFIISKGKVNVTREDSPNE-DPVFLRTL  227 (299)
T ss_dssp             HHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECT-TCEECEEEEEEESEEEEEECCSSSC-CCEEEEEE
T ss_pred             HHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeC-CCCCCEEEEEEeeEEEEEEecCCCC-cceEEEEc
Confidence            111111011100   0011111  11222  33899999999999 999999999999999999876 344 78899999


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVR  216 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  216 (234)
                      ++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+..++.+.+.+|+.....
T Consensus       228 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r~~~~~~  291 (299)
T 3shr_A          228 GKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAKAKYEAE  291 (299)
T ss_dssp             ETTCEECGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEeChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhhhhcchh
Confidence            9999999999999999999999999999999999999999999999999999999888776643

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=100.00  E-value=1.1e-34  Score=248.64  Aligned_cols=211  Identities=15%  Similarity=0.166  Sum_probs=162.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||+++++|+|++|.|+++. ..+|++..+..+++|++|||++++.+.||.+|++|.++|++|.|+++.|..++...|. 
T Consensus       182 qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~-  259 (416)
T 3tnp_B          182 QGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNA-  259 (416)
T ss_dssp             TTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHH-
T ss_pred             CCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchh-
Confidence            79999999999999999998 6788899999999999999999999999999999999999999999999988776652 


Q ss_pred             HHHHHHHHHHHHHh----CCCCC--ccccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCC------CCcc
Q psy8820          81 ELIHSSKREFMEQL----GVKDF--SGLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSD------GSND  146 (234)
Q Consensus        81 ~l~~~~~~~l~~~l----~~~~~--~~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~------g~~~  146 (234)
                      ...... ..+.+.+    .+...  ..+..  ..+.|++|++|+++ |+.++++|+|.+|.++++....+      | ++
T Consensus       260 ~~~~~~-~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~e-Gd~~~~~yiI~sG~v~v~~~~~~~~~~~~g-~~  336 (416)
T 3tnp_B          260 KKRKMY-ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQ-GDLADSFFIVESGEVKITMKRKGKSEVEEN-GA  336 (416)
T ss_dssp             HHSSSS-SSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECT-TSCCCEEEEEEEEEEEEECC-------------
T ss_pred             HHHHHH-HHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeC-CCcCCEEEEEEeCEEEEEEecCCcccccCC-ce
Confidence            100000 0000000    01110  01111  22899999999999 99999999999999999976554      4 67


Q ss_pred             EEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820         147 VHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVR  216 (234)
Q Consensus       147 ~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  216 (234)
                      .++..+++|++||+.+++.+.|+.++|+|.++|+|+.|++++|.+++..+|.+..+.+..+.+++..+..
T Consensus       337 ~~l~~l~~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~~L~~~~~  406 (416)
T 3tnp_B          337 VEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFG  406 (416)
T ss_dssp             CEEEEECTTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC-------------
T ss_pred             eEEEEeCCCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHHHHHHHhC
Confidence            8899999999999999999999999999999999999999999999999999988877777777766543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=100.00  E-value=3.6e-33  Score=228.26  Aligned_cols=201  Identities=15%  Similarity=0.211  Sum_probs=168.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||+++.+|+|++|.|+++.   +|  ..+..+++|++|||.+++.+.||.+|++|.++|+++.|+++.|..++...|. 
T Consensus        76 ~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-  149 (291)
T 2qcs_B           76 QGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTL-  149 (291)
T ss_dssp             TTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHH-
T ss_pred             CCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHH-
Confidence            69999999999999999987   45  5788999999999999999999999999999999999999999999888772 


Q ss_pred             HHHHHHHHHHHHHhC----CCCCc--cccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          81 ELIHSSKREFMEQLG----VKDFS--GLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        81 ~l~~~~~~~l~~~l~----~~~~~--~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      ...... ..+...+.    +.+..  .+..  ..+.+++|++|+++ |+.++.+|+|++|.++++....+|++...+..+
T Consensus       150 ~~~~~~-~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l  227 (291)
T 2qcs_B          150 RKRKMY-EEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQ-GEPGDEFFIILEGSAAVLQRRSENEEFVEVGRL  227 (291)
T ss_dssp             HHHHHH-HHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECT-TSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEE
T ss_pred             HHHHHH-HHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeC-CccCCEEEEEEeCEEEEEEecCCCCccEEEEEe
Confidence            222222 33333222    11111  1212  23899999999999 999999999999999999877666567889999


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHH
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLK  209 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~  209 (234)
                      ++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++.++|.+...+++.+..
T Consensus       228 ~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~~  284 (291)
T 2qcs_B          228 GPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYNS  284 (291)
T ss_dssp             CTTCEECSGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHHH
T ss_pred             CCCCEecHHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987666665544

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=239.18  Aligned_cols=203  Identities=16%  Similarity=0.197  Sum_probs=170.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      |||+++++|+|++|.|+++.   +|  ..+..+++|++|||++++.+.||.+|++|.++|++|.|+++.|..++...|. 
T Consensus       167 ~Gd~~~~~yiI~~G~v~v~~---~~--~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~-  240 (381)
T 4din_B          167 QGNEGDNFYVVDQGEVDVYV---NG--EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTL-  240 (381)
T ss_dssp             TTSBCCEEEECSSSEEEEEE---TT--EEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHH-
T ss_pred             CCCCCCeEEEEEeeEEEEEE---CC--eEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhH-
Confidence            69999999999999999996   34  4678899999999999999999999999999999999999999999888773 


Q ss_pred             HHHHHHHHHHHHHhC----CCCCc--cccce--eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          81 ELIHSSKREFMEQLG----VKDFS--GLDIR--VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        81 ~l~~~~~~~l~~~l~----~~~~~--~l~~~--~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      ...+.. ..+.+.+.    +.+..  .+...  .+.|++|++|+++ |+.++++|+|.+|.++++....+|+++..+..+
T Consensus       241 ~~~~~~-~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~e-Gd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l  318 (381)
T 4din_B          241 RKRKMY-EEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQ-GEPGDDFYIITEGTASVLQRRSPNEEYVEVGRL  318 (381)
T ss_dssp             HHHHHH-HHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCT-TSBCCEEEEEEESCEEEECCSSSSSCCCEEEEE
T ss_pred             HHHHHH-HHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeC-CCcCCEEEEEEeCEEEEEEecCCCCceEEEEEe
Confidence            222222 33333332    12211  12222  2899999999999 999999999999999999877666567789999


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHHHHHHHHHHhh
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTLKIAHSVLKRM  211 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~  211 (234)
                      ++|++||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|.+....++.+...+
T Consensus       319 ~~Gd~fGe~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~~~~l  377 (381)
T 4din_B          319 GPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRYNSFI  377 (381)
T ss_dssp             CTTCEECTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHHHHHH
T ss_pred             CCCCEechHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877666555543

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.5e-33  Score=221.46  Aligned_cols=188  Identities=16%  Similarity=0.191  Sum_probs=156.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      +||+++++|+|++|.|+++.   +|+  .+..+++|++|||.+++.+.||++|++|.++|+++.||++.|..++...|. 
T Consensus        44 ~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~-  117 (246)
T 3of1_A           44 QGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSF-  117 (246)
T ss_dssp             TTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTS-
T ss_pred             cCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHH-
Confidence            69999999999999999985   343  368899999999999999999999999999999999999999999999883 


Q ss_pred             HHHHHHHHHHHHHhC----CCCCc--cccc--eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          81 ELIHSSKREFMEQLG----VKDFS--GLDI--RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        81 ~l~~~~~~~l~~~l~----~~~~~--~l~~--~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      ...... ..+.+...    +.+..  .+..  ..+.|++|++|+++ |+.++.+|+|.+|.++++....     ..+..+
T Consensus       118 ~~~~~~-~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~-g~~~~~~y~I~~G~v~v~~~~~-----~~~~~l  190 (246)
T 3of1_A          118 KKRLMY-DDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIRE-GDQGENFYLIEYGAVDVSKKGQ-----GVINKL  190 (246)
T ss_dssp             HHHHHS-HHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECT-TSBCCEEEEEEECEEEEEETTT-----EEEEEE
T ss_pred             HHHHHH-HHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeC-CCcCCEEEEEEecEEEEEEcCC-----ceEEEc
Confidence            211111 22222221    11111  1222  23899999999999 9999999999999999987542     278899


Q ss_pred             CCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCHHhHHHHHhcchHHHH
Q psy8820         153 FPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQDDCSTLIDADMNVTL  201 (234)
Q Consensus       153 ~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~  201 (234)
                      .+|++||+.+++.+.|+.++++|.++|+++.|++++|.+++..+|++..
T Consensus       191 ~~g~~fGe~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~  239 (246)
T 3of1_A          191 KDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLK  239 (246)
T ss_dssp             ETTCEECHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHH
T ss_pred             CCCCcccHHHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHh
Confidence            9999999999999999999999999999999999999999999998753

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.95  E-value=4.9e-28  Score=210.32  Aligned_cols=198  Identities=19%  Similarity=0.193  Sum_probs=153.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCc--EEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGK--RKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~--~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++++|+|++|.|+++....+|+  +..+..+++|++|||.+ +.+.||++|++|.++|+++.|+++.|..++..+|
T Consensus        79 ~Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p  157 (469)
T 1o7f_A           79 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYR  157 (469)
T ss_dssp             TTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred             CCCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCH
Confidence            69999999999999999999888885  48899999999999999 9999999999999999999999999987755444


Q ss_pred             h-----------------H----------------HHHHHHHHH---------------------------HHH------
Q psy8820          79 E-----------------Q----------------ELIHSSKRE---------------------------FME------   92 (234)
Q Consensus        79 ~-----------------~----------------~l~~~~~~~---------------------------l~~------   92 (234)
                      +                 .                ...+.+...                           ++.      
T Consensus       158 ~~~~~l~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~rla~~Ll~~~~~~~~~~~~~~~~~~~~~t~~ela~~llg~~  237 (469)
T 1o7f_A          158 QYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQT  237 (469)
T ss_dssp             GGTTTTSCTTTSCSCC------------CCCSHHHHHHHHHHHHHHHHCGGGSEEEECSSCEEEEEEEHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHhccCcccCCCcCCCchHHHHHHHHHHHHHHHhcCCcceeeccccceEeeeeccccchHHHHHhcC
Confidence            2                 0                000000000                           000      


Q ss_pred             --------------Hh----------------------------------------------------------------
Q psy8820          93 --------------QL----------------------------------------------------------------   94 (234)
Q Consensus        93 --------------~l----------------------------------------------------------------   94 (234)
                                    .+                                                                
T Consensus       238 ~~t~SR~~~~~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  317 (469)
T 1o7f_A          238 SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMR  317 (469)
T ss_dssp             SCCSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHH
Confidence                          00                                                                


Q ss_pred             ----------------------C-------CCCC--ccccce--e-eeecCCCEEEEecCCCCceEEEEEeCeEEEEEec
Q psy8820          95 ----------------------G-------VKDF--SGLDIR--V-EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS  140 (234)
Q Consensus        95 ----------------------~-------~~~~--~~l~~~--~-~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~  140 (234)
                                            .       +.+.  ..+...  . +.|++|++|+++ |+.++++|+|++|.++++...
T Consensus       318 ~~l~~~~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~-G~~~~~~yiI~~G~v~v~~~~  396 (469)
T 1o7f_A          318 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIYG  396 (469)
T ss_dssp             HHTTSCTTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECT-TSCCCEEEEEEESEEEEEETT
T ss_pred             HHHcCCchhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeC-CCcCCeEEEEEEeEEEEEEcC
Confidence                                  0       0000  001111  1 479999999999 999999999999999998732


Q ss_pred             CCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcC-CeEEEEeCHHhHHHHHhcchHHHHHHHH
Q psy8820         141 SDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRL-PATIAWLPQDDCSTLIDADMNVTLKIAH  205 (234)
Q Consensus       141 ~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~-~~~~~~i~~~~~~~l~~~~p~~~~~~~~  205 (234)
                           ..++..+.+|++||+.+++.+.|+.++++|.+ +|+++.|++++|.+++.++|.+...+.+
T Consensus       397 -----~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e  457 (469)
T 1o7f_A          397 -----KGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKE  457 (469)
T ss_dssp             -----TEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC------
T ss_pred             -----CeeEEEecCCCEEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHh
Confidence                 24888999999999999999999999999998 7999999999999999999998876644

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.95  E-value=2.2e-27  Score=223.04  Aligned_cols=189  Identities=20%  Similarity=0.228  Sum_probs=146.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCC--CcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLES--GKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~--g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||++++||||++|+|.|+....+  +.+..+..+++|+.||| +++.+.||++||+|.++|++|+|++++|..+...+|
T Consensus        79 qGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~  157 (999)
T 4f7z_A           79 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYR  157 (999)
T ss_dssp             TTSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhCh
Confidence            799999999999999999986443  45688899999999999 899999999999999999999999999987654322


Q ss_pred             hHH------------------------------HHHH-------------------------------------------
Q psy8820          79 EQE------------------------------LIHS-------------------------------------------   85 (234)
Q Consensus        79 ~~~------------------------------l~~~-------------------------------------------   85 (234)
                      +..                              ....                                           
T Consensus       158 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~e~~d~~~~~~  237 (999)
T 4f7z_A          158 QYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTYRQCCVGTELVDWMIQQT  237 (999)
T ss_dssp             HHHTTTSCTTTSCSCCSSCC------CCSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETTEEEEEEEEHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCcccccCchhhcccccccccchhccccccccccccccccccccccccccccccccccC
Confidence            100                              0000                                           


Q ss_pred             ---------------------------------------------------------------------H----------
Q psy8820          86 ---------------------------------------------------------------------S----------   86 (234)
Q Consensus        86 ---------------------------------------------------------------------~----------   86 (234)
                                                                                           .          
T Consensus       238 ~~~~~~~~~~~~~q~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  317 (999)
T 4f7z_A          238 SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMR  317 (999)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTSEEETTCCSSCCSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhccccccccchhccccccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhh
Confidence                                                                                 0          


Q ss_pred             --------------HHHHHHHhC-C---CCCc-----ccccee---eeecCCCEEEEecCCCCceEEEEEeCeEEEEEec
Q psy8820          87 --------------KREFMEQLG-V---KDFS-----GLDIRV---EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKS  140 (234)
Q Consensus        87 --------------~~~l~~~l~-~---~~~~-----~l~~~~---~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~  140 (234)
                                    ...+...+. +   ....     .+...+   ..+++|++|++| ||.++.+|||++|.|.|+.. 
T Consensus       318 ~~l~k~~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQ-GE~gds~YIIlsG~V~V~~~-  395 (999)
T 4f7z_A          318 MILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIY-  395 (999)
T ss_dssp             HHHTSCGGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECT-TSBCCEEEEEEESEEEEEET-
T ss_pred             hhhcCCcccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeC-CCcCCeEEEEEeeEEEEEEc-
Confidence                          000000000 0   0000     011111   456889999999 99999999999999999863 


Q ss_pred             CCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCHHhHHHHHhcc
Q psy8820         141 SDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQDDCSTLIDAD  196 (234)
Q Consensus       141 ~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~~~~~~l~~~~  196 (234)
                          .+..+..+++||+||+++++++.|+.+||+|.+| |+++.|++++|.+++.+-
T Consensus       396 ----~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~  448 (999)
T 4f7z_A          396 ----GKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV  448 (999)
T ss_dssp             ----TTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred             ----CCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence                2456788999999999999999999999999885 999999999999998764

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.82  E-value=6.2e-20  Score=133.65  Aligned_cols=108  Identities=9%  Similarity=0.216  Sum_probs=94.6

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE---EEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH---LFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA  182 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~---~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~  182 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.+   +..++||++||+.+++.+.++.++++|.++|+++
T Consensus        31 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~  108 (142)
T 3mdp_A           31 EKSFPTGSVIFKE-NSKADNLMLLLEGGVELFYSNGGA-GSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVV  108 (142)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESCEEEECC----------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEE
T ss_pred             EEecCCCCEEEeC-CCCCCcEEEEEeCEEEEEEECCCC-CceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEE
Confidence            3699999999999 999999999999999999877766 6667   8999999999999999999999999999999999


Q ss_pred             EeCHHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         183 WLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       183 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      .|++++|.+++.++|.+...+++.+.+++++++
T Consensus       109 ~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl  141 (142)
T 3mdp_A          109 DINGARLREMSENNQALGQVLMNNVAAAVLARL  141 (142)
T ss_dssp             EEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred             EEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988887654

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.80  E-value=3.4e-19  Score=130.66  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=102.4

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+++ |++++++|+|++|.++++....+| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus        31 ~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~  108 (149)
T 2pqq_A           31 VTLARGDTLFHE-GDPGDRLYVVTEGKVKLHRTSPDG-RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGH  108 (149)
T ss_dssp             EEECTTCEEECT-TSEECEEEEEEESCEEEEEECTTS-SEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEG
T ss_pred             EEeCCCCEEECC-CCCCCeEEEEEecEEEEEEECCCC-cEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeH
Confidence            699999999999 999999999999999999887776 788999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchhhhhccc
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDF  220 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  220 (234)
                      ++|.+++.++|.+...+.+.+.+++.....++..
T Consensus       109 ~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~  142 (149)
T 2pqq_A          109 GDLQPWLNVRPEVATALLRAVARRLRKTNDAMSD  142 (149)
T ss_dssp             GGHHHHHHHCTHHHHHHHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888777665543

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.79  E-value=3e-19  Score=136.74  Aligned_cols=118  Identities=15%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.+++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus        64 ~~~~~~ge~i~~~-G~~~~~ly~I~~G~v~v~~~~~~g-~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~  141 (187)
T 3gyd_A           64 CYAAPRDCQLLTE-GDPGDYLLLILTGEVNVIKDIPNK-GIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLS  141 (187)
T ss_dssp             EEEECTTCEEECT-TSCCCEEEEEEEEEEEEEEEETTT-EEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEE
T ss_pred             EEEeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-CeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEc
Confidence            3899999999999 999999999999999999988776 78899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccceecee
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFALDWV  225 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  225 (234)
                      +++|.+++.++|.+...+.+.+.+.++++++.+...+..+
T Consensus       142 ~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl~~~~~~l~~~  181 (187)
T 3gyd_A          142 RDALYQLLANMPKLGNKVLIRLLQLLTARFRESYDRILPK  181 (187)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988777777777666555444433

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.79  E-value=3.1e-19  Score=131.67  Aligned_cols=112  Identities=13%  Similarity=0.237  Sum_probs=98.6

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.+|++||+.+++.+.+ +.++++|.++|+++.|
T Consensus        37 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i  114 (154)
T 2z69_A           37 LVNLDKGAYVFRQ-GEPAHAFYYLISGCVKIYRLTPEG-QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF  114 (154)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESCEEEECCCC------CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEE
T ss_pred             EEEecCCCEEecC-CCccceEEEEEeCEEEEEEECCCC-CEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEE
Confidence            3799999999999 999999999999999999877666 678899999999999999999988 9999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhcc
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD  219 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  219 (234)
                      ++++|.+++.++|.+...+++.+..++.....++.
T Consensus       115 ~~~~~~~l~~~~p~~~~~l~~~~~~rl~~~~~~i~  149 (154)
T 2z69_A          115 SNKAYLRQLQDNTPLALALLAKLSTRLHQRIDEIE  149 (154)
T ss_dssp             EHHHHHHHHTTCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred             CHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888776655543

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.77  E-value=2.1e-18  Score=132.37  Aligned_cols=107  Identities=12%  Similarity=0.051  Sum_probs=98.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEee-eeeeCcceEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGL-AVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~-~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++..+.+| ++.++.++.||++||+. +++.+.|+.++++|.++|+++.|
T Consensus        32 ~~~~~~g~~l~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i  109 (194)
T 3dn7_A           32 LKKVRKKETLLKT-GEICRINYFVVKGCLRLFFIDEKG-IEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSI  109 (194)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEE
T ss_pred             EEEEcCCCEEECC-CCeeeEEEEeecCeEEEEEECCCC-CEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEE
Confidence            4899999999999 999999999999999999988777 78899999999999987 67889999999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      |+++|.+++.++|.+...+.+.+.+++...
T Consensus       110 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~  139 (194)
T 3dn7_A          110 TYTEQENLFERIPALERYFRLVYQKSFAAA  139 (194)
T ss_dssp             EHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888777766554

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.76  E-value=4.9e-18  Score=131.42  Aligned_cols=107  Identities=15%  Similarity=0.256  Sum_probs=96.8

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc----ceEEEEEEcCCeEE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE----ASVFTIQSRLPATI  181 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~----~~~~~v~A~~~~~~  181 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.    |+.++++|.++|++
T Consensus        15 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v   92 (207)
T 2oz6_A           15 RRRYTAKSTIIYA-GDRCETLFFIIKGSVTILIEDDDG-REMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEV   92 (207)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEE
T ss_pred             eEEECCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEE
Confidence            3799999999999 999999999999999999888777 78899999999999999999888    89999999999999


Q ss_pred             EEeCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         182 AWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       182 ~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +.||+++|.+++.++|.+...+++.+..++...
T Consensus        93 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~~~~~  125 (207)
T 2oz6_A           93 AEISYAKFRELSQQDSEILYTLGSQMADRLRKT  125 (207)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888777666554

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.76  E-value=4.1e-18  Score=133.89  Aligned_cols=107  Identities=17%  Similarity=0.275  Sum_probs=99.8

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.||
T Consensus        31 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~  108 (227)
T 3d0s_A           31 PVDFPRGHTVFAE-GEPGDRLYIIISGKVKIGRRAPDG-RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMD  108 (227)
T ss_dssp             EEEECTTCEEECT-TCCCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEE
T ss_pred             EEEeCCCCEEEcC-CCcCCEEEEEEeeEEEEEEECCCC-cEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEe
Confidence            3899999999999 999999999999999999988777 78899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++|.+++.++|.+...+.+.+.+++...
T Consensus       109 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~  137 (227)
T 3d0s_A          109 RDALRSWIADRPEISEQLLRVLARRLRRT  137 (227)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888887776655

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.75  E-value=5.1e-18  Score=132.22  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=99.7

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus        24 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~  101 (216)
T 4ev0_A           24 RRLYPQGKPIFYQ-GDLGQALYLVASGKVRLFRTHLGG-QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALF  101 (216)
T ss_dssp             EEEECTTCEEECT-TCBCCEEEEEEESCEEEEEECSSS-CEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEE
T ss_pred             EEEeCCCCEEEeC-CCCCCEEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEc
Confidence            3799999999999 999999999999999999987777 78899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++|.+++.++|.+...+.+.+..++...
T Consensus       102 ~~~~~~l~~~~p~~~~~~~~~l~~~~~~~  130 (216)
T 4ev0_A          102 REDYLALIRRLPLVAHNLAALLARRLREA  130 (216)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888887776665

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.75  E-value=7.3e-18  Score=130.73  Aligned_cols=107  Identities=17%  Similarity=0.358  Sum_probs=98.9

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++..+.+| ++.++..+.||++||+.+++.+. ++.++++|.++|+++.|
T Consensus        21 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i   98 (210)
T 3ryp_A           21 IHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI   98 (210)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTC-CEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEE
T ss_pred             EEEeCCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEE
Confidence            3799999999999 999999999999999999888777 78899999999999999999887 89999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++++|.+++.++|.+...+.+.+..++...
T Consensus        99 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~  128 (210)
T 3ryp_A           99 SYKKFRQLIQVNPDILMRLSAQMARRLQVT  128 (210)
T ss_dssp             EHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888777766554

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.75  E-value=8.8e-18  Score=130.96  Aligned_cols=108  Identities=14%  Similarity=0.173  Sum_probs=99.5

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAW  183 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~  183 (234)
                      ..+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+. ++.++++|.++|+++.
T Consensus        23 ~~~~~~~g~~i~~~-G~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~  100 (213)
T 1o5l_A           23 KVIVFRKGEIVKHQ-DDPIEDVLILLEGTLKTEHVSENG-KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILS  100 (213)
T ss_dssp             EEEEECTTCEEECT-TCBCCEEEEEEESCEEEEEECTTS-CEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEE
T ss_pred             EEEEECCCCEEEcC-CCccceEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEE
Confidence            34899999999999 999999999999999999887777 78899999999999999998876 8899999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      |+++.|.+++.++|.+...+++.+..++...
T Consensus       101 i~~~~~~~l~~~~p~~~~~l~~~l~~~~~~~  131 (213)
T 1o5l_A          101 IPKEVFLDLLMKDRELLLFFLKDVSEHFRVV  131 (213)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988888888776654

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.74  E-value=8.7e-18  Score=132.68  Aligned_cols=111  Identities=7%  Similarity=0.023  Sum_probs=101.4

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAW  183 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~  183 (234)
                      ..+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.+ +.++++|.++|+++.
T Consensus        44 ~~~~~~~ge~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~  121 (232)
T 1zyb_A           44 HFIKHKAGETIIKS-GNPCTQLCFLLKGEISIVTNAKEN-IYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVC  121 (232)
T ss_dssp             EEEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECGGG-SCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEE
T ss_pred             EEEEECCCCEEECC-CCcccEEEEEEeeEEEEEEECCCC-CEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEE
Confidence            34799999999999 999999999999999999887776 788999999999999999999887 899999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ  217 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  217 (234)
                      |++++|.+++.++|.+...+.+.+.+++.....+
T Consensus       122 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~  155 (232)
T 1zyb_A          122 ISKAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR  155 (232)
T ss_dssp             EEHHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888877665433

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.74  E-value=8.4e-18  Score=132.94  Aligned_cols=108  Identities=14%  Similarity=0.230  Sum_probs=100.6

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.|+++....+| ++.++..++||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus        36 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~  113 (237)
T 3fx3_A           36 WRSYDRGETLFLQ-EEKAQAIHVVIDGWVKLFRMTPTG-SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIP  113 (237)
T ss_dssp             EEEECTTCEEECT-TSCCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEE
T ss_pred             EEEECCCCEEEcC-CCccceEEEEEeeEEEEEEECCCC-CEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEc
Confidence            3799999999999 999999999999999999988777 78899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      +++|.+++.++|.+...+++.+.+++....
T Consensus       114 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~  143 (237)
T 3fx3_A          114 SPVFVSLMRRDPEICISILATTFGHLHSLV  143 (237)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887776653

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.74  E-value=6.6e-18  Score=133.04  Aligned_cols=111  Identities=15%  Similarity=0.236  Sum_probs=100.7

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus        31 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~  108 (231)
T 3e97_A           31 ERNFQPDELVVEQ-DAEGEALHLVTTGVVRVSRVSLGG-RERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLH  108 (231)
T ss_dssp             EEEECTTCBCCCT-TCTTTCEEEECSSEEEEEEECC---CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEEC
T ss_pred             EEEECCCCEEEeC-CCCCCeEEEEEecEEEEEEECCCC-ceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEe
Confidence            3799999999999 999999999999999999988777 78899999999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchhhhhc
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQF  218 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~  218 (234)
                      ++.|.+++.++|.+...+.+.+.+++.....++
T Consensus       109 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~  141 (231)
T 3e97_A          109 REHFELILRRHPRVLWNLAEMLARRVTFLNDEL  141 (231)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888776654443

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.74  E-value=1.6e-17  Score=133.46  Aligned_cols=107  Identities=17%  Similarity=0.358  Sum_probs=99.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++.++.||++||+.+++.+. ++.++++|.++|+++.|
T Consensus        71 ~~~~~~ge~i~~~-G~~~~~~y~I~~G~v~~~~~~~~G-~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i  148 (260)
T 3kcc_A           71 IHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI  148 (260)
T ss_dssp             EEEECTTCEEECT-TCBCCEEEEEEECEEEEEEECTTC-CEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEE
T ss_pred             EEEECCCCEEECC-CCcCCeEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEE
Confidence            4899999999999 999999999999999999887777 78899999999999999999888 89999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++.|.+++.++|.+...+++.+..++...
T Consensus       149 ~~~~~~~l~~~~p~l~~~l~~~l~~~l~~~  178 (260)
T 3kcc_A          149 SYKKFRQLIQVNPDILMRLSAQMARRLQVT  178 (260)
T ss_dssp             EHHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887776654

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.74  E-value=2e-17  Score=129.12  Aligned_cols=108  Identities=18%  Similarity=0.271  Sum_probs=99.9

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCce--EEeeeeeeCcceEEEEEEcCCeEEEE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDM--IGGLAVLTGEASVFTIQSRLPATIAW  183 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~--~G~~~~l~~~~~~~~v~A~~~~~~~~  183 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..++||++  ||+.+++.+.|+.++++|.++|+++.
T Consensus        28 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~  105 (220)
T 3dv8_A           28 TQHVKKGTIIHNG-NMDCTGLLLVKSGQLRTYILSDEG-REITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWI  105 (220)
T ss_dssp             EEEECTTCEEEEG-GGCCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEE
T ss_pred             eEEeCCCCEEECC-CCCcceEEEEEeceEEEEEECCCC-CEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEE
Confidence            3799999999999 999999999999999999988777 7889999999999  78999999999999999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      ||+++|.+++.++|.+...+.+.+.+++....
T Consensus       106 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~  137 (220)
T 3dv8_A          106 IPAEIYKGIMKDSAPVANYTNELMATRFSDVM  137 (220)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998888887776653

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.73  E-value=7.9e-18  Score=132.68  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+.|+.++++|.++|+++.|++
T Consensus        36 ~~~~~g~~i~~~-g~~~~~~y~v~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~  113 (232)
T 2gau_A           36 FPCKKASTVFSE-GDIPNNLFYLYEGKIKILREGVYG-RFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPV  113 (232)
T ss_dssp             EEECTTCEEECT-TCCCCEEEEEEESCEEEEC------CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEH
Confidence            699999999999 999999999999999999877766 788899999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++|.+++.++|.+...+++.+.+++...
T Consensus       114 ~~~~~l~~~~p~~~~~~~~~l~~~l~~~  141 (232)
T 2gau_A          114 EAIEALLKGNTSFCRYFLKALAKELGYA  141 (232)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888887776655

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.73  E-value=2.6e-17  Score=129.36  Aligned_cols=107  Identities=19%  Similarity=0.262  Sum_probs=98.4

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc-ceEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE-ASVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~-~~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+.+++.+. |+.++++|.++|+++.|
T Consensus        36 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i  113 (230)
T 3iwz_A           36 RRRYPTRTDVFRP-GDPAGTLYYVISGSVSIIAEEDDD-RELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEI  113 (230)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESCEEEEEECTTS-CEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEE
T ss_pred             EEEeCCCCEEECC-CCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEE
Confidence            4799999999999 999999999999999999988777 78899999999999999998775 78899999999999999


Q ss_pred             CHHhHHHHHhcc-----hHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDAD-----MNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~-----p~~~~~~~~~~~~~~~~~  214 (234)
                      ++++|.+++.++     |.+...+++.+.+++...
T Consensus       114 ~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~  148 (230)
T 3iwz_A          114 SYERLQQLFQTSLSPDAPRILYAIGVQLSKRLLDT  148 (230)
T ss_dssp             EHHHHHHHHHTTTGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999     999988888887776654

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.73  E-value=1.6e-17  Score=129.37  Aligned_cols=106  Identities=13%  Similarity=0.189  Sum_probs=97.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCc--ceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGE--ASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~--~~~~~v~A~~~~~~~~i  184 (234)
                      +.|++|++|+++ |+.++++|+|.+|.|+++.   +   ..++..+++|++||+.+++.+.  ++.++++|.++|+++.|
T Consensus       101 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~---~---~~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i  173 (212)
T 3ukn_A          101 SFCAPGEFLIRQ-GDALQAIYFVCSGSMEVLK---D---NTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYI  173 (212)
T ss_dssp             EEECTTCEEECT-TSBCCEEEEEEECCEEEES---S---SCEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEE
T ss_pred             EEeCCCCEEEEC-CCcccEEEEEEecEEEEEE---C---CeEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEE
Confidence            799999999999 9999999999999999985   2   2678899999999999999988  99999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhcc
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD  219 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  219 (234)
                      ++++|.+++.++|.+...+.+.+.+++...+++..
T Consensus       174 ~~~~f~~ll~~~p~~~~~~~~~l~~~l~~~lr~~~  208 (212)
T 3ukn_A          174 SLKGLREVLRLYPEYAQKFVSEIQHDLTYNLREGS  208 (212)
T ss_dssp             EHHHHHHHHHHCHHHHHHHHHHHHHHEEEECBC--
T ss_pred             eHHHHHHHHHHChHHHHHHHHHHHHhhcccccccc
Confidence            99999999999999999999999999988877654

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.72  E-value=4.3e-17  Score=129.60  Aligned_cols=107  Identities=12%  Similarity=0.256  Sum_probs=97.9

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEcCCeEEEE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSRLPATIAW  183 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~~~~~~~~  183 (234)
                      .+.|++|++|+.+ |++++++|+|++|.++++....+| ++.++.++.||++||+.+++.+.|.  .++++|.++|+++.
T Consensus        45 ~~~~~~ge~i~~~-G~~~~~ly~v~~G~v~~~~~~~~G-~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~  122 (243)
T 3la7_A           45 VETFERNKTIFFP-GDPAERVYFLLKGAVKLSRVYEAG-EEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLS  122 (243)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESCEEEEEECTTC-CEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEE
T ss_pred             eEEECCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEE
Confidence            4799999999999 999999999999999999988777 7889999999999999999988874  48999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      |+++.|.+++.++|.+...+++.+..++...
T Consensus       123 i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~  153 (243)
T 3la7_A          123 APIEQVEQALKENPELSMLMLRGLSSRILQT  153 (243)
T ss_dssp             EEHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888777766554

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.72  E-value=1.7e-17  Score=127.94  Aligned_cols=101  Identities=17%  Similarity=0.251  Sum_probs=92.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|.+|.|+++.  .+| +  ++..+++|++||+.+++.+.++.++++|.++|+++.|++
T Consensus        97 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~~~~--~~g-~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~  170 (198)
T 2ptm_A           97 EVFQPADYVIQE-GTFGDRMFFIQQGIVDIIM--SDG-V--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSV  170 (198)
T ss_dssp             EEECTTCEEECT-TSCCSEEEEEEECCEEEEC--TTS-C--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEH
T ss_pred             eeeCCCCEEEEC-CCcCcEEEEEEeCEEEEEe--cCC-e--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeH
Confidence            899999999999 9999999999999999986  344 2  788999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSP  213 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~  213 (234)
                      ++|.++++++|.+...+.+.+..|+..
T Consensus       171 ~~f~~ll~~~p~~~~~~~~~~~~rl~~  197 (198)
T 2ptm_A          171 QHFNQVLDEFPAMRKTMEEIAVRRLTR  197 (198)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHChHHHHHHHHHHHHHHhc
Confidence            999999999999998888888877653

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.71  E-value=1.5e-16  Score=126.80  Aligned_cols=105  Identities=15%  Similarity=0.333  Sum_probs=96.9

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|.+|.++++....+| ++.++..+.||++||+  ++.+. +.++++|.++|+++.|+
T Consensus        34 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~  108 (250)
T 3e6c_C           34 IRDFAKGSAVIMP-GEEITSMIFLVEGKIKLDIIFEDG-SEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFS  108 (250)
T ss_dssp             EEEECTTCEEECT-TCCCCSEEEEEESCEEEEEECTTS-CEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEEC
T ss_pred             EEEECCCCEEECC-CCCCCeEEEEEeeEEEEEEECCCC-CEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEc
Confidence            3899999999999 999999999999999999988777 7889999999999999  77777 99999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchhh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFV  215 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~  215 (234)
                      ++.|.+++.++|.+...+.+.+.+++....
T Consensus       109 ~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~  138 (250)
T 3e6c_C          109 EKSLRTVFRTDEDMIFEIFKNYLTKVAYYA  138 (250)
T ss_dssp             HHHHHHHHHHCTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887776653

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.71  E-value=6.2e-18  Score=132.72  Aligned_cols=107  Identities=13%  Similarity=0.222  Sum_probs=98.8

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcc-eEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEA-SVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~-~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++....+| ++.++..++||++||+.+++.+.| +.++++|.++|+++.|
T Consensus        34 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i  111 (227)
T 3dkw_A           34 LVNLDKGAYVFRQ-GEPAHAFYYLISGCVKIYRLTPEG-QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRF  111 (227)
T ss_dssp             EEECCTTEEEECT-TSBCCEEEEEEESCEECCBCCGGG-CCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEE
T ss_pred             EEEECCCCEEEcC-CCccceEEEEEeCEEEEEEECCCC-CEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEE
Confidence            3799999999999 999999999999999999877776 678889999999999999999999 8999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++++|.+++.++|.+...+.+.+..++...
T Consensus       112 ~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~  141 (227)
T 3dkw_A          112 SNKAYLRQLQDNTPLALALLAKLSTRLHQR  141 (227)
T ss_dssp             ESHHHHHHHSSCTHHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887776654

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.71  E-value=1e-17  Score=124.84  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=86.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |++++++|+|++|.++++. ..+| ++.++..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus        64 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~-~~~g-~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~  140 (161)
T 3idb_B           64 KLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDG-VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDR  140 (161)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEESEEEEEE-EETT-EEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEH
T ss_pred             eEeCCCCEEEeC-CCCCcEEEEEEeCEEEEEE-cCCC-CeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeH
Confidence            899999999999 9999999999999999998 5555 788999999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHH
Q psy8820         187 DDCSTLIDADMNVTL  201 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~  201 (234)
                      ++|.+++.++|.+..
T Consensus       141 ~~~~~l~~~~p~~~~  155 (161)
T 3idb_B          141 VTFRRIIVKNNAKKR  155 (161)
T ss_dssp             HHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHCHHHHH
Confidence            999999999998753

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.70  E-value=1.8e-16  Score=125.57  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=94.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEc-CCeEEEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSR-LPATIAW  183 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~-~~~~~~~  183 (234)
                      +.|++|++|+++ |++++++|+|++|.|+++....+| ++.++..+ ||++||+.+++.+.++  .+++.|. ++|+++.
T Consensus        21 ~~~~~ge~i~~~-G~~~~~~y~I~~G~v~~~~~~~~G-~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~   97 (238)
T 2bgc_A           21 KQFHKKELIFNQ-WDPQEYCIFLYDGITKLTSISENG-TIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYV   97 (238)
T ss_dssp             EEEETTCEEECT-TCCCCEEEEEEESEEEEEEECTTS-CEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEE
T ss_pred             EEECCCCEEEeC-CCCCceEEEEEecEEEEEEECCCC-CEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEE
Confidence            699999999999 999999999999999999988777 77888888 9999999999988864  6777777 5999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      |+++.|.+++.++|.+...+++.+.+++...
T Consensus        98 i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~  128 (238)
T 2bgc_A           98 IKINELKELLSKNLTHFFYVFQTLQKQVSYS  128 (238)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EeHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998888887776654

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.70  E-value=2.7e-17  Score=119.10  Aligned_cols=99  Identities=18%  Similarity=0.361  Sum_probs=90.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++...        ...+.||++||+.+++.+.++.++++|.++|+++.|+
T Consensus        36 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~--------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~  106 (138)
T 1vp6_A           36 ARTVPAGAVICRI-GEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLH  106 (138)
T ss_dssp             EEEECTTCEEECT-TSCCCEEEEEEESCEEECSSS--------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEE
T ss_pred             EEEeCCCCEEEeC-CCCcceEEEEEeeEEEEEeCC--------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEEC
Confidence            3799999999999 999999999999999998543        1478999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSP  213 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~  213 (234)
                      +++|.+++.++|.+...+.+.+.+|+..
T Consensus       107 ~~~~~~l~~~~p~~~~~~~~~~~~r~~~  134 (138)
T 1vp6_A          107 SADFQMLCSSSPEIAEIFRKTALERRGA  134 (138)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999888887654

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.69  E-value=9.6e-17  Score=123.29  Aligned_cols=99  Identities=18%  Similarity=0.259  Sum_probs=90.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |++++++|+|++|.++++....+| ++.++..+.||++||+ +++.+.|+.++++|.++|+++.||+
T Consensus         2 ~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~   78 (195)
T 3b02_A            2 KRFARKETIYLR-GEEARTLYRLEEGLVRVVELLPDG-RLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEP   78 (195)
T ss_dssp             EEECTTCEEECT-TSBCCCEEEEEESCEEEEEECTTS-CEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECG
T ss_pred             eEcCCCCEEECC-CCCCCeEEEEEeCEEEEEEECCCC-CEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcH
Confidence            579999999999 999999999999999999887776 7889999999999999 9999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +.|.      |.+...+++.+..++...
T Consensus        79 ~~~~------p~~~~~~~~~l~~~l~~~  100 (195)
T 3b02_A           79 RAMD------HEALHRVARNLARQMRRV  100 (195)
T ss_dssp             GGCC------HHHHHHHHHHHHHHHHHH
T ss_pred             HHcC------HHHHHHHHHHHHHHHHHH
Confidence            9998      888888888777766654

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.68  E-value=2e-16  Score=117.33  Aligned_cols=95  Identities=15%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeC--cceEEEEEEcCCeEEEE
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTG--EASVFTIQSRLPATIAW  183 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~--~~~~~~v~A~~~~~~~~  183 (234)
                      .+.+++|++|+++ |++++++|+|++|.++++.      ++.++..+.||++||+.+++.+  .++.++++|.++|+++.
T Consensus        52 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~------~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~  124 (160)
T 4f8a_A           52 TVHCAPGDLIYHA-GESVDSLCFVVSGSLEVIQ------DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHV  124 (160)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESEEEEEE------TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEE
T ss_pred             eeeeCCCCEEEeC-CCCccEEEEEEeeEEEEEE------CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEE
Confidence            3899999999999 9999999999999999986      2468889999999999999988  68999999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHH
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSV  207 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~  207 (234)
                      |++++|.++++++|.+...+.+.+
T Consensus       125 i~~~~~~~l~~~~p~~~~~~~~~l  148 (160)
T 4f8a_A          125 IKRDALQKVLEFYTAFSHSFSRNL  148 (160)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHC
T ss_pred             EcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987776665

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.68  E-value=5e-17  Score=118.12  Aligned_cols=79  Identities=8%  Similarity=0.180  Sum_probs=68.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEE---EEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKE---EAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP   77 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~---~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~   77 (234)
                      +||+++++|+|++|.|+++...++|++..   +..+++|++|||.+++.+.|+.+|++|.++|+++.||++.|..++..+
T Consensus        43 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~  122 (142)
T 3mdp_A           43 ENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENN  122 (142)
T ss_dssp             TTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHC
T ss_pred             CCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHC
Confidence            69999999999999999999888898888   999999999999999999999999999999999999999999999999


Q ss_pred             ch
Q psy8820          78 SE   79 (234)
Q Consensus        78 p~   79 (234)
                      |+
T Consensus       123 p~  124 (142)
T 3mdp_A          123 QA  124 (142)
T ss_dssp             HH
T ss_pred             hH
Confidence            83

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.68  E-value=5.2e-16  Score=121.26  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=90.2

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|++|.++++ ...+| ++.++..+.||++||+       |+.++++|.++|+++.||
T Consensus        29 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~-~~~~G-~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~   98 (220)
T 2fmy_A           29 EQRYSKKAILYTP-NTERNLVFLVKSGRVRVY-LAYED-KEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTD   98 (220)
T ss_dssp             EEEECTTCEEECT-TCSSCEEEEEEESEEEEE-EECSS-CEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEE
T ss_pred             eeEeCCCCEEECC-CCCCCeEEEEEecEEEEE-ECCCC-CEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEe
Confidence            3899999999999 999999999999999995 55555 7889999999999998       788999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++|.+++.++|.+...+.+.+.+++...
T Consensus        99 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  127 (220)
T 2fmy_A           99 IRNFQNIVVEFPAFSLNMVKVLGDLLKNS  127 (220)
T ss_dssp             HHHHHHHHHHCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988888877776654

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.68  E-value=6.7e-16  Score=120.87  Aligned_cols=99  Identities=11%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|.+|.++++ ...+| ++.++..+.||++||       .++.++++|.++|+++.|+
T Consensus        25 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~-~~~~G-~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~   94 (222)
T 1ft9_A           25 SKIHAKGSLVCTG-EGDENGVFVVVDGRLRVY-LVGEE-REISLFYLTSGDMFC-------MHSGCLVEATERTEVRFAD   94 (222)
T ss_dssp             EEEECTTCEEECT-TCCCCCEEEEEESEEEEE-EEETT-EEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEEC
T ss_pred             EEEECCCCEEECC-CCCCCeEEEEEecEEEEE-ECCCC-CEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEe
Confidence            4899999999999 999999999999999997 55565 788999999999999       6788999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++.|.+++.++|.+...+.+.+.+++...
T Consensus        95 ~~~~~~l~~~~p~~~~~~~~~l~~~l~~~  123 (222)
T 1ft9_A           95 IRTFEQKLQTCPSMAWGLIAILGRALTSC  123 (222)
T ss_dssp             HHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888887776654

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.67  E-value=1.5e-16  Score=132.16  Aligned_cols=104  Identities=19%  Similarity=0.271  Sum_probs=97.0

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |++++++|+|++|.++++....+| ++ ++..+.+|++||+.+++.+.|+.++++|.++|+++.|++
T Consensus        39 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~~~~~g-~~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~  115 (333)
T 4ava_A           39 LRAAAGQVLLRQ-GEPAVSFLLISSGSAEVSHVGDDG-VA-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGR  115 (333)
T ss_dssp             EEECTTCEEECT-TSBCCCEEEEEECCEEEEEECTTC-CE-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECH
T ss_pred             EEECCCCEEEeC-CCcCCEEEEEEeeEEEEEEECCCC-cE-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcH
Confidence            699999999999 999999999999999999988777 44 888999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      ++|.+++ ++|.+...+.+.+.+++...
T Consensus       116 ~~~~~l~-~~p~~~~~~~~~~~~~~~~~  142 (333)
T 4ava_A          116 GAFATMV-HIPGVGERLLRTARQRLAAF  142 (333)
T ss_dssp             HHHHHHH-HSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hChHHHHHHHHHHHHHHHhh
Confidence            9999999 99999999988888877744

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.67  E-value=1.5e-16  Score=123.01  Aligned_cols=102  Identities=13%  Similarity=0.245  Sum_probs=91.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |++++++|+|.+|.|+++.  .+| ++.   .+++|++||+.+++.+.++.++++|.++|+++.|+
T Consensus        97 ~~~~~~ge~I~~~-g~~~~~ly~I~~G~v~v~~--~~g-~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~  169 (202)
T 3bpz_A           97 FEVFQPGDYIIRE-GTIGKKMYFIQHGVVSVLT--KGN-KEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLS  169 (202)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEECEEEEEC--TTS-CCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEE
T ss_pred             ceEECCCCEEEEC-CCcCCeEEEEeccEEEEEE--CCC-eEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEE
Confidence            3899999999999 9999999999999999974  333 333   57999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                      +++|.++++++|.+...+.+.+..|+...
T Consensus       170 ~~~f~~ll~~~p~~~~~~~~~~~~rl~~~  198 (202)
T 3bpz_A          170 VDNFNEVLEEYPMMRRAFETVAIDRLDRI  198 (202)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999988888888776543

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.67  E-value=3.9e-16  Score=126.99  Aligned_cols=122  Identities=16%  Similarity=0.183  Sum_probs=106.1

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.+++|++|+++ |+.++.+|+|++|.++++.   +|   ..+..+.+|++||+.+++.+.|+.++++|.++|+++.|+
T Consensus        64 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~---~g---~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~  136 (291)
T 2qcs_B           64 PVSFIAGETVIQQ-GDEGDNFYVIDQGEMDVYV---NN---EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGID  136 (291)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEECCEEEEE---TT---EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEE
T ss_pred             EEEECCCCEEEeC-CCCCceEEEEeeeEEEEEE---CC---eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEE
Confidence            3899999999999 9999999999999999997   33   578899999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~  234 (234)
                      +++|.+++.++|.+...+...+.+++.-+       ...+...+.+..+++|+.|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~  192 (291)
T 2qcs_B          137 RDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIV  192 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEE
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEE
Confidence            99999999999999888888777765543       34455567778888887664

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.66  E-value=6.1e-16  Score=126.44  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=102.0

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++.+|+|++|.++++.   +   ...+..+.+|++||+.+++.+.|+.++++|.++|+++.|++
T Consensus        65 ~~~~~g~~i~~~-G~~~~~~yiI~~G~v~v~~---~---g~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~  137 (299)
T 3shr_A           65 VEYGKDSCIIKE-GDVGSLVYVMEDGKVEVTK---E---GVKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR  137 (299)
T ss_dssp             EEECTTCEEECT-TCBCCCEEEEEESCEEEEE---T---TEEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECH
T ss_pred             EEECCCCEEEcC-CCcCceEEEEEEEEEEEEE---C---CEEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcH
Confidence            899999999999 9999999999999999965   2   26788999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~  234 (234)
                      ++|.+++.++|.........+.+++.-+       +..+...+.+..+++|+.|+
T Consensus       138 ~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~  192 (299)
T 3shr_A          138 QCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYII  192 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEE
T ss_pred             HHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEE
Confidence            9999999999987665544444433222       45566667788888887764

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.65  E-value=7.9e-17  Score=137.86  Aligned_cols=125  Identities=13%  Similarity=0.122  Sum_probs=104.0

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|++|.++++. ..+| ++.++..+.+|++||+++++.+.|+.++++|.++|+++.|++
T Consensus       171 ~~~~~Ge~I~~q-Gd~~d~~YiI~sG~v~v~~-~~~G-~~~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r  247 (416)
T 3tnp_B          171 KLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYV-KCDG-VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDR  247 (416)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEECEEEEEE-ECSS-CEEEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEH
T ss_pred             EEeCCCCEEEeC-CCCCceEEEEEeeEEEEEE-ecCC-CEEEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEee
Confidence            899999999999 9999999999999999998 4444 678899999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~  234 (234)
                      +.|.+++.++|.+...+...+.+++.-+       +..+...+.+..++.|+.|+
T Consensus       248 ~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~  302 (416)
T 3tnp_B          248 VTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQII  302 (416)
T ss_dssp             HHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEE
T ss_pred             hhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEE
Confidence            9999999999987654444333333222       44555666777777777653

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.4e-16  Score=126.24  Aligned_cols=122  Identities=15%  Similarity=0.183  Sum_probs=103.3

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.+++|++|+++ |++++++|+|++|.++++..   +   ..+..+.||++||+.+++.+.|+.++++|.++|+++.|+
T Consensus        32 ~~~~~~g~~i~~~-G~~~~~~y~i~~G~v~v~~~---~---~~~~~~~~g~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~  104 (246)
T 3of1_A           32 EKSVPKGATIIKQ-GDQGDYFYVVEKGTVDFYVN---D---NKVNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALD  104 (246)
T ss_dssp             EEEECTTCEEECT-TCCCCEEEEEEECCEEEEST---T---SCCEEECTTCEECHHHHHHTCCCSSEEEESSCEEEEEEE
T ss_pred             eEEECCCCEEEec-CCCCCEEEEEEeeEEEEEEC---C---EEEEecCCCCeeehhHHhcCCCCCcEEEECCCeEEEEEE
Confidence            3799999999999 99999999999999999852   2   235789999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~  234 (234)
                      ++.|.+++.++|.....+...+.+++.-+       +..+...+.+..+++|+.|+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~  160 (246)
T 3of1_A          105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETII  160 (246)
T ss_dssp             HHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEE
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEE
Confidence            99999999999988776666666554433       44566667778888887664

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.65  E-value=4.1e-16  Score=114.09  Aligned_cols=79  Identities=22%  Similarity=0.306  Sum_probs=76.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|++|.++++....+|++..+..+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        42 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~  120 (149)
T 2pqq_A           42 EGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPE  120 (149)
T ss_dssp             TTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTH
T ss_pred             CCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcH
Confidence            6899999999999999999998999999999999999999999999999999999999999999999999999999983

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.63  E-value=6.8e-16  Score=111.99  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=78.0

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      .+.|++|++|+++ |+.++++|+|++|.++++.   +|   ..+..+.+|++||+.+++.+.++.++++|.++|+++.|+
T Consensus        48 ~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~---~g---~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~  120 (139)
T 3ocp_A           48 PVEYGKDSCIIKE-GDVGSLVYVMEDGKVEVTK---EG---VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAID  120 (139)
T ss_dssp             EEEECSSCEEECT-TSCCCEEEEEEECCEEEEE---TT---EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEE
T ss_pred             EEecCCCCEEEeC-CCcCCEEEEEEeCEEEEEE---CC---EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEc
Confidence            3899999999999 9999999999999999965   22   578899999999999999999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHH
Q psy8820         186 QDDCSTLIDADMNVTL  201 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~  201 (234)
                      +++|.+++.++|.+..
T Consensus       121 ~~~~~~l~~~~p~~~r  136 (139)
T 3ocp_A          121 RQCFQTIMMRTGLIKH  136 (139)
T ss_dssp             HHHHHHHHTC------
T ss_pred             HHHHHHHHhhChHhhh
Confidence            9999999999998753

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.63  E-value=5.7e-16  Score=114.03  Aligned_cols=93  Identities=14%  Similarity=0.102  Sum_probs=77.7

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|++|.|+++....+|++..+..+++|++||+.+++.+.+ +.++++|.++|+++.||++.|..++..+| 
T Consensus        49 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p-  127 (154)
T 2z69_A           49 QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNT-  127 (154)
T ss_dssp             TTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCH-
T ss_pred             CCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCceEEEEccceEEEEECHHHHHHHHHHCh-
Confidence            6999999999999999999888889999999999999999999999998 99999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHHhC
Q psy8820          80 QELIHSSKREFMEQLG   95 (234)
Q Consensus        80 ~~l~~~~~~~l~~~l~   95 (234)
                      ... ....+.++.++.
T Consensus       128 ~~~-~~l~~~~~~rl~  142 (154)
T 2z69_A          128 PLA-LALLAKLSTRLH  142 (154)
T ss_dssp             HHH-HHHHHHHHHHHT
T ss_pred             HHH-HHHHHHHHHHHH
Confidence            333 333366666654

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.62  E-value=7.6e-16  Score=117.66  Aligned_cols=79  Identities=19%  Similarity=0.309  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++.+|+|++|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        76 ~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~  154 (187)
T 3gyd_A           76 EGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPK  154 (187)
T ss_dssp             TTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999884

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.62  E-value=2.2e-15  Score=118.15  Aligned_cols=79  Identities=11%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        43 ~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  121 (227)
T 3d0s_A           43 EGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPE  121 (227)
T ss_dssp             TTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHH
T ss_pred             CCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999984

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.61  E-value=4.9e-16  Score=115.64  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=73.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++. ..+|++..+..+++|++|||.+++.+.|+.++++|.++|+++.|+++.|..++..+|
T Consensus        75 ~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p  151 (161)
T 3idb_B           75 QGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNN  151 (161)
T ss_dssp             TTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESCCEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCCCEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCH
Confidence            69999999999999999998 778999999999999999999999999999999999999999999999999887777

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.61  E-value=6.3e-16  Score=130.84  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=106.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|++|.++++.   +|   ..+..+.+|++||+++++.+.|+.++++|.++|+++.|++
T Consensus       156 ~~~~~ge~I~~~-Gd~~~~~yiI~~G~v~v~~---~~---~~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~  228 (381)
T 4din_B          156 VTHIAGETVIQQ-GNEGDNFYVVDQGEVDVYV---NG---EWVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDR  228 (381)
T ss_dssp             EECCTTCBSSCT-TSBCCEEEECSSSEEEEEE---TT---EEEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEH
T ss_pred             EEECCCCEEEeC-CCCCCeEEEEEeeEEEEEE---CC---eEeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEch
Confidence            899999999999 9999999999999999996   22   4677899999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchh-------hhhccceeceeeeccCcccC
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPF-------VRQFDFALDWVFLEGGQAVY  234 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~  234 (234)
                      +.|.+++.++|.+...+...+.+++.-+       +..+...+.+..+++|+.|+
T Consensus       229 ~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~  283 (381)
T 4din_B          229 DSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIV  283 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSS
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEE
Confidence            9999999999999888777777766443       44566667888888888774

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.61  E-value=1.2e-15  Score=112.71  Aligned_cols=87  Identities=11%  Similarity=0.169  Sum_probs=81.4

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|++|.++++.   +|   ..+..+.+|++||+.+++.+.++.++++|.++|+++.|++
T Consensus        64 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~~---~~---~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~  136 (154)
T 3pna_A           64 VSFIAGETVIQQ-GDEGDNFYVIDQGEMDVYV---NN---EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR  136 (154)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEESCEEEEE---TT---EEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEeC-CCCCCeEEEEEecEEEEEE---CC---EEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeH
Confidence            899999999999 9999999999999999997   22   4677899999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHH
Q psy8820         187 DDCSTLIDADMNVT  200 (234)
Q Consensus       187 ~~~~~l~~~~p~~~  200 (234)
                      ++|.+++.++|.+.
T Consensus       137 ~~~~~ll~~~~~~~  150 (154)
T 3pna_A          137 DSYRRILMGSTLRK  150 (154)
T ss_dssp             HHHHHHTHHHHHHC
T ss_pred             HHHHHHHHhChHHH
Confidence            99999999999764

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.59  E-value=2e-15  Score=115.62  Aligned_cols=79  Identities=14%  Similarity=0.075  Sum_probs=75.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeee-ccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLI-EMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~-~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..++|||+|||. +++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        44 ~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  123 (194)
T 3dn7_A           44 TGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPA  123 (194)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTT
T ss_pred             CCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHH
Confidence            699999999999999999999999999999999999999998 6789999999999999999999999999999999884

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.59  E-value=4.7e-16  Score=112.43  Aligned_cols=91  Identities=19%  Similarity=0.152  Sum_probs=79.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEE--EECCCceEEeeee---eeCcc------eEEEEEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF--TAFPGDMIGGLAV---LTGEA------SVFTIQS  175 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~--~~~~g~~~G~~~~---l~~~~------~~~~v~A  175 (234)
                      +.|++|++|+++ |+.++++|+|++|.++++ ...+| ++.++.  .+.+|++||+.++   +.+.+      +.++++|
T Consensus        32 ~~~~~g~~i~~~-G~~~~~~y~i~~G~v~~~-~~~~g-~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A  108 (137)
T 1wgp_A           32 CLFTEKSYLVRE-GDPVNEMLFIIRGRLESV-TTDGG-RSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKA  108 (137)
T ss_dssp             CCBCTTEEEECT-TSBCSEEEEEEECCCEEE-CCSSC-SSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEE
T ss_pred             EEeCCCCEEEeC-CCCCCeEEEEEeeEEEEE-EcCCC-cceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEE
Confidence            389999999999 999999999999999965 44455 555555  8999999999985   77774      5789999


Q ss_pred             cCCeEEEEeCHHhHHHHHhcchHHH
Q psy8820         176 RLPATIAWLPQDDCSTLIDADMNVT  200 (234)
Q Consensus       176 ~~~~~~~~i~~~~~~~l~~~~p~~~  200 (234)
                      .++|+++.|++++|.+++.++|.+.
T Consensus       109 ~~~~~~~~i~~~~~~~l~~~~p~l~  133 (137)
T 1wgp_A          109 LTEVEAFALIADELKFVASQFRRSG  133 (137)
T ss_dssp             SSCBEEEEEEHHHHHHHHHHHCCCT
T ss_pred             eEEEEEEEECHHHHHHHHHHCHhhH
Confidence            9999999999999999999999764

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.59  E-value=3.6e-15  Score=115.20  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=74.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC----CceeEEEEccceeEEEeCccccccccCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST----SRNTTVMAVRDSELAKLPEGLCDHLPRS   76 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~----~r~~tv~A~~~~~l~~i~~~~f~~l~~~   76 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.    |+.++++|.++|+++.||++.|..++..
T Consensus        27 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~  106 (207)
T 2oz6_A           27 AGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQ  106 (207)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcceEEEECCcEEEEEECHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999998    8999999999999999999999999999


Q ss_pred             Cch
Q psy8820          77 PSE   79 (234)
Q Consensus        77 ~p~   79 (234)
                      +|+
T Consensus       107 ~p~  109 (207)
T 2oz6_A          107 DSE  109 (207)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            883

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.59  E-value=3e-15  Score=115.45  Aligned_cols=98  Identities=14%  Similarity=0.263  Sum_probs=88.0

Q ss_pred             eeecCCCEEEEecCCCC--ceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVED--NKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~--~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      +.|++|++|+++ |+++  +++|+|++|.++++....+| ++.++..+.||++||+ +++.+.++.++++|.++|+++.|
T Consensus         8 ~~~~~g~~i~~~-g~~~~~~~~y~v~~G~v~~~~~~~~G-~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i   84 (202)
T 2zcw_A            8 VSFKAGDVILYP-GVPGPRDRAYRVLEGLVRLEAVDEEG-NALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL   84 (202)
T ss_dssp             EEECTTCEEECS-BSCCTTCCCEEEEESCEEEEEECTTS-CEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC
T ss_pred             EEECCCCEEECC-CCCCCCCeEEEEEeCEEEEEEECCCC-cEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE
Confidence            799999999999 9999  99999999999999888777 7889999999999999 88889999999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchh
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPF  214 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~  214 (234)
                       ++.|.      |.+...+++.+..++...
T Consensus        85 -~~~~~------p~~~~~~~~~l~~~l~~~  107 (202)
T 2zcw_A           85 -PENPD------PELLKDLAQHLSQGLAEA  107 (202)
T ss_dssp             -CSSCC------HHHHHHHHHHHHHHHHHH
T ss_pred             -hHhcC------HHHHHHHHHHHHHHHHHH
Confidence             98876      888877777776665554

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.58  E-value=5.2e-15  Score=114.54  Aligned_cols=79  Identities=19%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..++||++|||.+++.+. |+.++++|.++|+++.+|++.|..++..+|+
T Consensus        33 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  112 (210)
T 3ryp_A           33 QGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD  112 (210)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCceEEEEECCcEEEEEEcHHHHHHHHHHChH
Confidence            699999999999999999999999999999999999999999999988 8999999999999999999999999999884

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.58  E-value=3e-15  Score=116.41  Aligned_cols=79  Identities=27%  Similarity=0.349  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        36 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  114 (216)
T 4ev0_A           36 QGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPL  114 (216)
T ss_dssp             TTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999884

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.58  E-value=3.7e-15  Score=117.22  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        43 ~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  121 (231)
T 3e97_A           43 QDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPR  121 (231)
T ss_dssp             TTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHH
T ss_pred             CCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999998884

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.58  E-value=5.4e-15  Score=116.54  Aligned_cols=79  Identities=6%  Similarity=-0.017  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++.+|+|.+|.|+++...++|++..+..+++|++|||.+++.+.| +.++++|.++|+++.||++.|..++..+|+
T Consensus        57 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  136 (232)
T 1zyb_A           57 SGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDI  136 (232)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHH
T ss_pred             CCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHH
Confidence            6999999999999999999988899999999999999999999999988 999999999999999999999999999983

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.57  E-value=2.2e-14  Score=110.04  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCD   71 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~   71 (234)
                      |||+++++|+|++|.|+++...++|++..+..++||++||| +++.+.|+.++++|.++|+++.||++.|.
T Consensus        13 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~~~   82 (195)
T 3b02_A           13 RGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRAMD   82 (195)
T ss_dssp             TTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGGCC
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHHcC
Confidence            69999999999999999999999999999999999999999 99999999999999999999999999998

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.56  E-value=5.4e-15  Score=116.72  Aligned_cols=79  Identities=18%  Similarity=0.307  Sum_probs=76.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        48 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  126 (237)
T 3fx3_A           48 QEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPE  126 (237)
T ss_dssp             TTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999884

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.56  E-value=7.1e-15  Score=114.37  Aligned_cols=79  Identities=23%  Similarity=0.254  Sum_probs=75.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+|+
T Consensus        36 ~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  115 (213)
T 1o5l_A           36 QDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRE  115 (213)
T ss_dssp             TTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCceEEEEEccceEEEEEeHHHHHHHHHHCHH
Confidence            699999999999999999999999999999999999999999999886 9999999999999999999999999999884

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.56  E-value=9.3e-15  Score=117.28  Aligned_cols=79  Identities=19%  Similarity=0.297  Sum_probs=75.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|++|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+|+
T Consensus        83 ~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~  162 (260)
T 3kcc_A           83 QGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPD  162 (260)
T ss_dssp             TTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTH
T ss_pred             CCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHH
Confidence            699999999999999999999999999999999999999999999998 8999999999999999999999999999883

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.55  E-value=1.4e-14  Score=113.64  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=74.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC-CceeEEEEccceeEEEeCccccccccCCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST-SRNTTVMAVRDSELAKLPEGLCDHLPRSP   77 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~-~r~~tv~A~~~~~l~~i~~~~f~~l~~~~   77 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+++|++|||.+++.+. |+.++++|.++|+++.||++.|..++..+
T Consensus        48 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~  125 (230)
T 3iwz_A           48 PGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQTS  125 (230)
T ss_dssp             TTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTT
T ss_pred             CCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHh
Confidence            699999999999999999999999999999999999999999999875 89999999999999999999999999988

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.55  E-value=2.1e-15  Score=130.74  Aligned_cols=98  Identities=20%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCC-ccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGS-NDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~-~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      .+.|++|++|+++ |+.++++|+|++|.++++....+|. ++.++..++||++||+.+ +.+.|+.++++|.++|+++.|
T Consensus        67 ~~~~~~g~~i~~~-Gd~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i  144 (469)
T 1o7f_A           67 YENLEKGITLFRQ-GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRI  144 (469)
T ss_dssp             EEEECTTCEEECT-TSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEE
T ss_pred             EEEECCCCEEEeC-CCCCCcEEEEEeeEEEEEEecCCCCCcceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEE
Confidence            3899999999999 9999999999999999998887763 258999999999999999 999999999999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHH
Q psy8820         185 PQDDCSTLIDADMNVTLKIAH  205 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~  205 (234)
                      ++++|.+++.++|.+...+++
T Consensus       145 ~~~~~~~l~~~~p~~~~~l~~  165 (469)
T 1o7f_A          145 EQEDFKALWEKYRQYMAGLLA  165 (469)
T ss_dssp             EHHHHHHHHHHHGGGTTTTSC
T ss_pred             cHHHHHHHHHhCHHHHHHHHH
Confidence            999999999999997665544

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.55  E-value=4e-15  Score=114.49  Aligned_cols=74  Identities=16%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++.  .+|+  .+..+++|++|||.+++.+.||.+|++|.++|+++.|+++.|..++..+|
T Consensus       108 ~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p  181 (198)
T 2ptm_A          108 EGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLDEFP  181 (198)
T ss_dssp             TTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEEeeEEEEEEEeHHHHHHHHHHCh
Confidence            69999999999999999986  5665  78899999999999999999999999999999999999999999999998

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.54  E-value=5e-15  Score=116.51  Aligned_cols=79  Identities=14%  Similarity=0.277  Sum_probs=71.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++.+|+|.+|.|+++...++|++..+..++||++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|+
T Consensus        47 ~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  125 (232)
T 2gau_A           47 EGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTS  125 (232)
T ss_dssp             TTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcceEEEEecceEEEEEEHHHHHHHHHHCHH
Confidence            6999999999999999999888889999999999999999999999999999999999999999999999999999884

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.53  E-value=3.4e-14  Score=112.80  Aligned_cols=79  Identities=19%  Similarity=0.320  Sum_probs=74.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC--ceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS--RNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~--r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++...++|++..+..++||++||+.+++.+.|  +.++++|.++|+++.||++.|..++..+|
T Consensus        57 ~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p  136 (243)
T 3la7_A           57 PGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQALKENP  136 (243)
T ss_dssp             TTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCCEEEEESSSEEEEEEEHHHHHHHHTTCH
T ss_pred             CCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcceEEEEEccceEEEEEcHHHHHHHHHHCH
Confidence            6999999999999999999999999999999999999999999999886  56999999999999999999999999998


Q ss_pred             h
Q psy8820          79 E   79 (234)
Q Consensus        79 ~   79 (234)
                      +
T Consensus       137 ~  137 (243)
T 3la7_A          137 E  137 (243)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.52  E-value=4.7e-15  Score=116.17  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCC-ceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTS-RNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~-r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..++||++|||.+++.+.| +.++++|.++|+++.||++.|..++..+|+
T Consensus        46 ~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~  125 (227)
T 3dkw_A           46 QGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTP  125 (227)
T ss_dssp             TTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTH
T ss_pred             CCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence            6999999999999999999988899999999999999999999999999 999999999999999999999999999984

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.52  E-value=2.1e-14  Score=111.90  Aligned_cols=79  Identities=15%  Similarity=0.202  Sum_probs=75.8

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcE--eeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDL--VGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~--fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++...++|++..+..++||++  ||+.+++.+.|+.++++|.++|+++.||++.|..++..+|
T Consensus        40 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p  119 (220)
T 3dv8_A           40 GNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSA  119 (220)
T ss_dssp             GGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCH
Confidence            68999999999999999999999999999999999999  7999999999999999999999999999999999999988


Q ss_pred             h
Q psy8820          79 E   79 (234)
Q Consensus        79 ~   79 (234)
                      +
T Consensus       120 ~  120 (220)
T 3dv8_A          120 P  120 (220)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.51  E-value=1e-14  Score=105.15  Aligned_cols=86  Identities=15%  Similarity=0.200  Sum_probs=77.4

Q ss_pred             eeeec-CCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEE-EEcCCeEEEE
Q psy8820         106 VEHIP-GGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTI-QSRLPATIAW  183 (234)
Q Consensus       106 ~~~~~-~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v-~A~~~~~~~~  183 (234)
                      .+.++ +|++|+++ |+.++++|+|++|.++++.  .+| ++   ..+.+|++||+.+++.+.++.+++ +|.++|+++.
T Consensus        41 ~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~~~~--~~g-~~---~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~  113 (134)
T 2d93_A           41 FEVVEQAGAIILED-GQELDSWYVILNGTVEISH--PDG-KV---ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVC  113 (134)
T ss_dssp             EEEECSSSCEEECT-TCEECEEEECCBSCEEEEC--SSS-CE---EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEE
T ss_pred             EEEecCCCCEEEeC-CCCCCeEEEEEeCEEEEEc--CCC-cE---EEecCCCccChhHhcCCCcceeEEEEEecceEEEE
Confidence            38999 99999999 9999999999999999985  344 33   558999999999999999998888 9999999999


Q ss_pred             eCHHhHHHHHhcchH
Q psy8820         184 LPQDDCSTLIDADMN  198 (234)
Q Consensus       184 i~~~~~~~l~~~~p~  198 (234)
                      |++++|.+++.+++.
T Consensus       114 i~~~~~~~l~~~~~~  128 (134)
T 2d93_A          114 IAQQDYWRILNHVEK  128 (134)
T ss_dssp             EEHHHHHHHSSCCSS
T ss_pred             EeHHHHHHHHHHHHh
Confidence            999999999998774

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.51  E-value=2.1e-14  Score=119.08  Aligned_cols=77  Identities=17%  Similarity=0.129  Sum_probs=73.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      |||+++++|+|.+|.|+++....+|++ .+..+++|++|||.+++.+.||++|++|.++|+++.|+++.|..++ ++|.
T Consensus        50 ~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~  126 (333)
T 4ava_A           50 QGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPG  126 (333)
T ss_dssp             TTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHHHHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTT
T ss_pred             CCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHHHhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChH
Confidence            699999999999999999999888987 8899999999999999999999999999999999999999999999 7883

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.50  E-value=1.5e-14  Score=104.78  Aligned_cols=73  Identities=15%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++.   +|  ..+..+++|++|||.+++.+.|+.+|++|.++|+++.|+++.|..++.++|
T Consensus        60 ~g~~~~~~y~i~~G~v~~~~---~g--~~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p  132 (139)
T 3ocp_A           60 EGDVGSLVYVMEDGKVEVTK---EG--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTG  132 (139)
T ss_dssp             TTSCCCEEEEEEECCEEEEE---TT--EEEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC--
T ss_pred             CCCcCCEEEEEEeCEEEEEE---CC--EEEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhCh
Confidence            69999999999999999965   44  478999999999999999999999999999999999999999999999988

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.48  E-value=4.3e-14  Score=109.86  Aligned_cols=87  Identities=23%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCC--CceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTST--SRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~--~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++.   +|  ..+..+++|++|||.+++.+.  ||++||+|.++|+++.|+++.|..++..+|
T Consensus       112 ~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p  186 (212)
T 3ukn_A          112 QGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDLQYISLKGLREVLRLYP  186 (212)
T ss_dssp             TTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCCCCcceEEEEcccEEEEEEeHHHHHHHHHHCh
Confidence            69999999999999999985   34  678899999999999999998  999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHh
Q psy8820          79 EQELIHSSKREFMEQL   94 (234)
Q Consensus        79 ~~~l~~~~~~~l~~~l   94 (234)
                      + .. ....+.+++.+
T Consensus       187 ~-~~-~~~~~~l~~~l  200 (212)
T 3ukn_A          187 E-YA-QKFVSEIQHDL  200 (212)
T ss_dssp             H-HH-HHHHHHHHHHE
T ss_pred             H-HH-HHHHHHHHHhh
Confidence            3 32 33335555543

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.48  E-value=1.2e-13  Score=109.87  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++...++|++..+..++||++|||  ++.+. +.++++|.++|+++.||++.|..++..+|+
T Consensus        46 ~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  121 (250)
T 3e6c_C           46 PGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDED  121 (250)
T ss_dssp             TTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTH
T ss_pred             CCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHH
Confidence            69999999999999999999999999999999999999999  78888 999999999999999999999999999884

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.47  E-value=3.6e-14  Score=105.01  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccC--CCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTS--TSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~--~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++..     +..+..+++|++|||.+++.+  .|+.++++|.++|+++.||++.|..++..+|
T Consensus        64 ~g~~~~~~y~i~~G~v~~~~~-----~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p  138 (160)
T 4f8a_A           64 AGESVDSLCFVVSGSLEVIQD-----DEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYT  138 (160)
T ss_dssp             TTSBCCEEEEEEESEEEEEET-----TEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCCccEEEEEEeeEEEEEEC-----CEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHH
Confidence            699999999999999999872     268899999999999999988  7999999999999999999999999999988

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.47  E-value=3.2e-14  Score=105.00  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++.   +|  ..+..+++|++|||.+++.+.|+.++++|.++|+++.|+++.|..++.++|
T Consensus        75 ~G~~~~~~y~i~~G~v~~~~---~~--~~~~~~~~G~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~  147 (154)
T 3pna_A           75 QGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST  147 (154)
T ss_dssp             TTSCCCEEEEEEESCEEEEE---TT--EEEEEECTTCEECCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred             CCCCCCeEEEEEecEEEEEE---CC--EEEEEecCCCEeeehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhCh
Confidence            69999999999999999987   34  477889999999999999999999999999999999999999999987776

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.47  E-value=3.6e-14  Score=109.50  Aligned_cols=74  Identities=18%  Similarity=0.196  Sum_probs=67.7

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++.  .+|++.   .+++|++|||.+++.+.||.+||+|.++|+++.|+++.|..++..+|+
T Consensus       109 ~g~~~~~ly~I~~G~v~v~~--~~g~~~---~l~~G~~fGe~~~~~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~  182 (202)
T 3bpz_A          109 EGTIGKKMYFIQHGVVSVLT--KGNKEM---KLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM  182 (202)
T ss_dssp             TTSBCCEEEEEEECEEEEEC--TTSCCE---EEETTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG
T ss_pred             CCCcCCeEEEEeccEEEEEE--CCCeEE---EEcCCCEeccHHHhcCCCcccEEEEeeEEEEEEEEHHHHHHHHHHCHH
Confidence            69999999999999999974  456544   589999999999999999999999999999999999999999999994

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.46  E-value=3.1e-14  Score=102.81  Aligned_cols=86  Identities=20%  Similarity=0.294  Sum_probs=72.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchH
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQ   80 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~   80 (234)
                      +||+++++|+|.+|.|+++...       ...+++|++||+.+++.+.|+.++++|.++|+++.||++.|..++..+|+ 
T Consensus        48 ~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~-  119 (138)
T 1vp6_A           48 IGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPE-  119 (138)
T ss_dssp             TTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHH-
T ss_pred             CCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeeehHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHH-
Confidence            6999999999999999997643       24789999999999999999999999999999999999999999999982 


Q ss_pred             HHHHHHHHHHHHHhC
Q psy8820          81 ELIHSSKREFMEQLG   95 (234)
Q Consensus        81 ~l~~~~~~~l~~~l~   95 (234)
                       +.....+.+.+++.
T Consensus       120 -~~~~~~~~~~~r~~  133 (138)
T 1vp6_A          120 -IAEIFRKTALERRG  133 (138)
T ss_dssp             -HHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHHhhc
Confidence             33333355555543

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.46  E-value=7.8e-15  Score=105.96  Aligned_cols=77  Identities=22%  Similarity=0.251  Sum_probs=67.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEE--eecCCcEeeeecc---ccCCC------ceeEEEEccceeEEEeCccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEA--EYSKGDLVGLIEM---VTSTS------RNTTVMAVRDSELAKLPEGL   69 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~--~~~~G~~fGe~~l---l~~~~------r~~tv~A~~~~~l~~i~~~~   69 (234)
                      |||+++.+|+|++|.|+++ ...+|++..+.  .+++|++|||.++   +.+.|      +++|++|.++|+++.|+++.
T Consensus        43 ~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~  121 (137)
T 1wgp_A           43 EGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADE  121 (137)
T ss_dssp             TTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHH
T ss_pred             CCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHH
Confidence            6999999999999999965 56778777666  9999999999996   78775      57999999999999999999


Q ss_pred             cccccCCCc
Q psy8820          70 CDHLPRSPS   78 (234)
Q Consensus        70 f~~l~~~~p   78 (234)
                      |..++.++|
T Consensus       122 ~~~l~~~~p  130 (137)
T 1wgp_A          122 LKFVASQFR  130 (137)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHCH
Confidence            998877766

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.46  E-value=2.4e-13  Score=107.43  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCc--eeEEEEc-cceeEEEeCccccccccCCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSR--NTTVMAV-RDSELAKLPEGLCDHLPRSP   77 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r--~~tv~A~-~~~~l~~i~~~~f~~l~~~~   77 (234)
                      +||+++++|+|.+|.|+++...++|++..+..+ +|++|||.+++.+.++  ..++.|. ++|+++.||++.|..++..+
T Consensus        32 ~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~  110 (238)
T 2bgc_A           32 QWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINELKELLSKN  110 (238)
T ss_dssp             TTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHC
T ss_pred             CCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcceeEEEEEcceEEEEEeHHHHHHHHHHC
Confidence            699999999999999999999999999999999 9999999999998864  6677777 59999999999999999888


Q ss_pred             ch
Q psy8820          78 SE   79 (234)
Q Consensus        78 p~   79 (234)
                      |+
T Consensus       111 p~  112 (238)
T 2bgc_A          111 LT  112 (238)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.44  E-value=7.4e-15  Score=123.13  Aligned_cols=98  Identities=18%  Similarity=0.365  Sum_probs=0.0

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|+.|+++ |++++++|+|.+|.++++..+        ...+++|++||+.+++.+.|+.++++|.++|+++.+++
T Consensus       254 ~~~~~ge~I~~~-G~~~~~ly~I~~G~v~v~~~~--------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~  324 (355)
T 3beh_A          254 RTVPAGAVICRI-GEPGDRMFFVVEGSVSVATPN--------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS  324 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECCCCEEEeC-CCcCceEEEEEeeEEEEEECC--------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeH
Confidence            899999999999 999999999999999998653        24789999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhch
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSP  213 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~  213 (234)
                      ++|.++++++|++...+.+.+.+|+.+
T Consensus       325 ~~f~~ll~~~p~~~~~l~~~l~~rl~~  351 (355)
T 3beh_A          325 ADFQMLCSSSPEIAEIFRKTALERRGA  351 (355)
T ss_dssp             ---------------------------
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHh
Confidence            999999999999998888877776543

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.43  E-value=5.3e-14  Score=101.31  Aligned_cols=73  Identities=16%  Similarity=0.213  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEE-EEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTV-MAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv-~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++.  .+|++   ..+++|++|||.+++.+.|+.+++ +|.++|+++.|+++.|..++...+
T Consensus        54 ~g~~~~~~y~i~~G~v~~~~--~~g~~---~~l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~  127 (134)
T 2d93_A           54 DGQELDSWYVILNGTVEISH--PDGKV---ENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVE  127 (134)
T ss_dssp             TTCEECEEEECCBSCEEEEC--SSSCE---EEECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCS
T ss_pred             CCCCCCeEEEEEeCEEEEEc--CCCcE---EEecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHH
Confidence            68999999999999999985  56765   458999999999999999999999 999999999999999999988766

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.41  E-value=6.8e-13  Score=103.44  Aligned_cols=71  Identities=14%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++ ..++|++..+..++||++|||       |+.++++|.++|+++.||++.|..++..+|+
T Consensus        41 ~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  111 (220)
T 2fmy_A           41 PNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPA  111 (220)
T ss_dssp             TTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTH
T ss_pred             CCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHH
Confidence            6999999999999999995 678899999999999999999       8999999999999999999999999999884

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.40  E-value=1.2e-12  Score=100.77  Aligned_cols=69  Identities=25%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             CCCCC--CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccc
Q psy8820           1 QYDRS--DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCD   71 (234)
Q Consensus         1 ~Gd~~--~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~   71 (234)
                      +||++  +++|+|++|.|+++...++|++..+..++||++||+ +++.+.|+.++++|.++|+++.| ++.|.
T Consensus        19 ~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~v~~i-~~~~~   89 (202)
T 2zcw_A           19 PGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVRLEPL-PENPD   89 (202)
T ss_dssp             SBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEEEEEC-CSSCC
T ss_pred             CCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEEEEEE-hHhcC
Confidence            68999  999999999999999999999999999999999999 99999999999999999999999 99887

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.37  E-value=1.1e-12  Score=102.36  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|+++ ..++|++..+..++||++||       .|+.++++|.++|+++.||++.|..++..+|+
T Consensus        37 ~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG-------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~  107 (222)
T 1ft9_A           37 GEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC-------MHSGCLVEATERTEVRFADIRTFEQKLQTCPS  107 (222)
T ss_dssp             TTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE-------SCSSCEEEESSCEEEEEECHHHHHHHHHHCGG
T ss_pred             CCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec-------CCCCEEEEEccceEEEEEeHHHHHHHHHHChH
Confidence            6999999999999999997 77889999999999999999       78999999999999999999999999998884

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.35  E-value=2.1e-12  Score=121.61  Aligned_cols=93  Identities=22%  Similarity=0.252  Sum_probs=84.4

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCC-CccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-SNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      +.+++|++||+| |+.++++|+|++|.|.|+....++ ..+..+..+.||+.||+ +++.+.|+.++++|.++|+++.|+
T Consensus        68 e~~~~Ge~Ifrq-Gd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~  145 (999)
T 4f7z_A           68 ENLEKGITLFRQ-GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIE  145 (999)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEESEEEEEECSSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEE
T ss_pred             EEECCCCEEEcC-CCcCCEEEEEEeeEEEEEEecCCCCCCceeEEEecCCcchhh-hhccCCCcceEEEeccceEEEEEE
Confidence            899999999999 999999999999999999765442 25678889999999999 889999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHH
Q psy8820         186 QDDCSTLIDADMNVTL  201 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~  201 (234)
                      +++|..++.++|+...
T Consensus       146 r~~F~~i~~~~~e~~~  161 (999)
T 4f7z_A          146 QEDFKALWEKYRQYMA  161 (999)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhChHHHH
Confidence            9999999999987543

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.30  E-value=2.5e-12  Score=116.21  Aligned_cols=89  Identities=21%  Similarity=0.286  Sum_probs=82.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcC-CeEEEEeC
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRL-PATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~-~~~~~~i~  185 (234)
                      +.|++|++|+++ |+.++++|+|++|.|+++..   | + .++.++.+|++||+.+++.+.++.++++|.+ +|+++.|+
T Consensus        59 ~~~~kGe~I~~e-Gd~~~~lyiIlsG~V~v~~~---g-~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~  132 (694)
T 3cf6_E           59 SHAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIY---G-K-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVD  132 (694)
T ss_dssp             EECSTTCEEECT-TSBCCEEEEEEESEEEEEET---T-T-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEE
T ss_pred             EEECCCCEEECC-CCcCCeEEEEEEEEEEEEEe---C-C-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEe
Confidence            689999999999 99999999999999999974   2 2 6889999999999999999999999999999 59999999


Q ss_pred             HHhHHHHHhcchHHHH
Q psy8820         186 QDDCSTLIDADMNVTL  201 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~  201 (234)
                      +++|.+++.++|.+..
T Consensus       133 ~~~f~~ll~~~p~l~~  148 (694)
T 3cf6_E          133 KEDFNRILRDVEANTV  148 (694)
T ss_dssp             HHHHHHHTTTTCCCCE
T ss_pred             HHHHHHHHHHCHHHHH
Confidence            9999999999998754

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.15  E-value=3.4e-12  Score=106.88  Aligned_cols=71  Identities=20%  Similarity=0.277  Sum_probs=0.0

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++++|+|.+|.++++..+       ...+++||+|||.+++.+.||.++++|.++|+++.+|+++|.++++++|
T Consensus       265 ~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p  335 (355)
T 3beh_A          265 IGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP  335 (355)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CCCcCceEEEEEeeEEEEEECC-------eeEECCCCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCH
Confidence            6999999999999999998753       2479999999999999999999999999999999999999999999998

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.13  E-value=3.9e-11  Score=108.50  Aligned_cols=74  Identities=20%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEcc-ceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVR-DSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~-~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++++|+|++|.|+++..   |+ ..+..+++||+|||.+++.+.|+.++++|.+ +|+++.|+++.|..++...|
T Consensus        70 eGd~~~~lyiIlsG~V~v~~~---g~-~il~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p  144 (694)
T 3cf6_E           70 QGEEGTSWYIILKGSVNVVIY---GK-GVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE  144 (694)
T ss_dssp             TTSBCCEEEEEEESEEEEEET---TT-EEEEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred             CCCcCCeEEEEEEEEEEEEEe---CC-EEEEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence            699999999999999999874   33 6889999999999999999999999999999 59999999999998887766

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=96.92  E-value=0.05  Score=42.00  Aligned_cols=152  Identities=13%  Similarity=0.148  Sum_probs=84.9

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccc----ccc-ccCCCc
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGL----CDH-LPRSPS   78 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~----f~~-l~~~~p   78 (234)
                      +.+.+++|++|+++++..   |+.   ..+++||++    .+ ...-...++|.+++.++.+....    |.. ..+..+
T Consensus        56 ~~~~~~~Vl~G~~~~~i~---~~~---~~l~~Gd~~----~~-p~~~~H~~~a~~~~~~l~i~~~~~~~~~~~~~~~~l~  124 (227)
T 3rns_A           56 LGNRYYYCFNGNGEIFIE---NNK---KTISNGDFL----EI-TANHNYSIEARDNLKLIEIGEKIGDGNMENKTLKMLE  124 (227)
T ss_dssp             SSCEEEEEEESEEEEEES---SCE---EEEETTEEE----EE-CSSCCEEEEESSSEEEEEEEECC--------------
T ss_pred             CCCEEEEEEeCEEEEEEC---CEE---EEECCCCEE----EE-CCCCCEEEEECCCcEEEEEEeecccchhhhhHhhcCC
Confidence            578899999999998864   433   458999875    22 22233456688999998773221    110 011111


Q ss_pred             hHHHHHHHHHHHHHHhCCCCCcc----------ccceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820          79 EQELIHSSKREFMEQLGVKDFSG----------LDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVH  148 (234)
Q Consensus        79 ~~~l~~~~~~~l~~~l~~~~~~~----------l~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~  148 (234)
                      ....+     .+.+.....+...          +...+..+++|..+-.- -.+.+.+++|++|.+.+...   + +   
T Consensus       125 ~~~~~-----~~~d~~~~~~g~~~~~~l~~~~~~~~~~~~~~~G~~~~~H-~H~~~e~~~Vl~G~~~~~i~---g-~---  191 (227)
T 3rns_A          125 SASAF-----NLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPH-KAPGDALVTVLDGEGKYYVD---G-K---  191 (227)
T ss_dssp             --CCE-----ESGGGSCCCTTCEEEEEEEEETTEEEEEEEECTTCEEEEE-CCSSEEEEEEEEEEEEEEET---T-E---
T ss_pred             ccccC-----cHHHccccCCCCEEEEEEEECCCeEEEEEEECCCCccCCE-ECCCcEEEEEEeEEEEEEEC---C-E---
Confidence            00000     0011111111111          11122788999987655 55677899999999999753   2 1   


Q ss_pred             EEEECCCceEEeeeeeeCcceEEEEEE-cCCeEEEEe
Q psy8820         149 LFTAFPGDMIGGLAVLTGEASVFTIQS-RLPATIAWL  184 (234)
Q Consensus       149 ~~~~~~g~~~G~~~~l~~~~~~~~v~A-~~~~~~~~i  184 (234)
                      ...+.+||++=.-   .+.+  ..+.+ .++++++.+
T Consensus       192 ~~~l~~Gd~i~ip---~~~~--H~~~~~~~~~~~ll~  223 (227)
T 3rns_A          192 PFIVKKGESAVLP---ANIP--HAVEAETENFKMLLI  223 (227)
T ss_dssp             EEEEETTEEEEEC---TTSC--EEEECCSSCEEEEEE
T ss_pred             EEEECCCCEEEEC---CCCc--EEEEeCCCCEEEEEE
Confidence            3567899875422   2333  34556 777777643

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=94.95  E-value=0.53  Score=36.51  Aligned_cols=129  Identities=12%  Similarity=0.084  Sum_probs=68.5

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccccccc-CCCchHHHH
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLP-RSPSEQELI   83 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~-~~~p~~~l~   83 (234)
                      ...+++|++|++.+..   +|+   ...+.+||.+=  -+=.+.++......-++|.++.+.+  +.... ...+..   
T Consensus        54 ~~e~~~Vl~G~~~~~~---~~~---~~~l~~Gd~i~--~ip~~~~H~~~n~~~~~~~~l~i~r--~~~~e~~~~p~g---  120 (243)
T 3h7j_A           54 EVQIGMVVSGELMMTV---GDV---TRKMTALESAY--IAPPHVPHGARNDTDQEVIAIDIKR--LKADETYTSPED---  120 (243)
T ss_dssp             SEEEEEEEESEEEEEE---TTE---EEEEETTTCEE--EECTTCCEEEEECSSSCEEEEEEEE--CCTTCCCCCCTT---
T ss_pred             CcEEEEEEEeEEEEEE---CCE---EEEECCCCEEE--EcCCCCcEeeEeCCCCcEEEEEEec--cCccccCCCchh---
Confidence            5679999999998876   342   24689998530  0113445544433344466665532  22100 001100   


Q ss_pred             HHHHHHHHHHhCCCCC-----------ccccceeeeecC-CCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEE
Q psy8820          84 HSSKREFMEQLGVKDF-----------SGLDIRVEHIPG-GTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFT  151 (234)
Q Consensus        84 ~~~~~~l~~~l~~~~~-----------~~l~~~~~~~~~-g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~  151 (234)
                           .+...+.-.+.           ..+...+..+++ |..+-.- --....+++|++|.+.+....     +  ...
T Consensus       121 -----~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~H-~H~~~e~~~Vl~G~~~~~i~~-----~--~~~  187 (243)
T 3h7j_A          121 -----YFLDIFKTRDLLPGMEVTFFVEDWVEIMLAKIPGNGGEMPFH-KHRNEQIGICIGGGYDMTVEG-----C--TVE  187 (243)
T ss_dssp             -----SEECCEECSCSBTTBCEEEEEETTEEEEEEEECTTTEEEEEE-CCSSEEEEEECSSCEEEEETT-----E--EEE
T ss_pred             -----hhhhhccCcccccCcceeeeccceeEEEEEEECCCCCcCCCE-eCCCcEEEEEEECEEEEEECC-----E--EEE
Confidence                 00000000010           011222366888 8766554 555678999999999997532     1  345


Q ss_pred             ECCCceEE
Q psy8820         152 AFPGDMIG  159 (234)
Q Consensus       152 ~~~g~~~G  159 (234)
                      +.+||.+-
T Consensus       188 l~~Gd~i~  195 (243)
T 3h7j_A          188 MKFGTAYF  195 (243)
T ss_dssp             ECTTCEEE
T ss_pred             ECCCCEEE
Confidence            89999765

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=92.74  E-value=3  Score=32.97  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             eeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         106 VEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       106 ~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      +.-+.+|+.+..+ ... +.++-+++|...|+...       ..+.|.+||..     +--....++..+.++|..+.|.
T Consensus       211 V~l~G~Ges~~~~-~~~-d~wiWqLEGss~Vt~~~-------q~~~L~~~DsL-----LIpa~~~y~~~r~~gsv~L~I~  276 (286)
T 2qnk_A          211 VIAYGQGSSEGLR-QNV-DVWLWQLEGSSVVTMGG-------RRLSLAPDDSL-----LVLAGTSYAWERTQGSVALSVT  276 (286)
T ss_dssp             EEEECSEEEEECC-CSS-CEEEEEEESCEEEEETT-------EEEEECTTEEE-----EECTTCCEEEEECTTCEEEEEE
T ss_pred             EEEEcCCcccccc-CcC-cEEEEEEcCceEEEECC-------eEEeccCCCEE-----EecCCCeEEEEecCCeEEEEEE
Confidence            3557788887777 665 88999999999876532       23457777743     2233356888999999999875


Q ss_pred             H
Q psy8820         186 Q  186 (234)
Q Consensus       186 ~  186 (234)
                      .
T Consensus       277 ~  277 (286)
T 2qnk_A          277 Q  277 (286)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=92.63  E-value=2.1  Score=33.20  Aligned_cols=154  Identities=12%  Similarity=0.107  Sum_probs=78.0

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-Cch----
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSE----   79 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~----   79 (234)
                      ++.+++|++|++.+...   |+.   ..+++||++=   +=.+.|+.....  +++.++.+.+ .|..+-.. .|.    
T Consensus        68 ~ee~~~Vl~G~~~~~~~---~~~---~~l~~Gd~~~---~p~~~~H~~~n~--~~~~~l~v~~-~y~~~~g~~~p~~~vg  135 (246)
T 1sfn_A           68 YQRFAFVLSGEVDVAVG---GET---RTLREYDYVY---LPAGEKHMLTAK--TDARVSVFEK-PYQTVEGVQAPGVYWG  135 (246)
T ss_dssp             SEEEEEEEEEEEEEECS---SCE---EEECTTEEEE---ECTTCCCEEEEE--EEEEEEEEEE-CCCCBTTBCCCCCEEE
T ss_pred             eeEEEEEEECEEEEEEC---CEE---EEECCCCEEE---ECCCCCEEEEeC--CCEEEEEEEe-eeccCCCCcCCceeec
Confidence            46788999999988753   433   3599998862   223456555444  6676665531 12211110 010    


Q ss_pred             --HH----HHHHHHHHHHHHhCCCCCc--cccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccEEEE
Q psy8820          80 --QE----LIHSSKREFMEQLGVKDFS--GLDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLF  150 (234)
Q Consensus        80 --~~----l~~~~~~~l~~~l~~~~~~--~l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~  150 (234)
                        +.    -..-. ..+..+.-+....  .+.....++++|..+-. . -....+.++|++|...+....       ...
T Consensus       136 ~~~dv~~~~~~~~-~g~~~r~l~p~~~~~~~~~~~~tl~PG~~~~~~~-~h~~ee~~~vLeG~~~~~~~~-------~~~  206 (246)
T 1sfn_A          136 NERENPGYPFEGD-DHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAE-VHYMEHGLLMLEGEGLYKLEE-------NYY  206 (246)
T ss_dssp             ETTTCCCEETTSC-TTEEEEECSCCCTTCSEEEEEEEECTTCBCSSCB-CCSSCEEEEEEECEEEEEETT-------EEE
T ss_pred             cHhhCCccccCCC-CCeEEEEeCCCccCCCeEEEEEEECCCCccCccc-CCCceEEEEEEECEEEEEECC-------EEE
Confidence              00    00000 0000000011111  11222378888886653 3 445678999999999987532       124


Q ss_pred             EECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820         151 TAFPGDMIGGLAVLTGEASVFTIQSRLPATIA  182 (234)
Q Consensus       151 ~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~  182 (234)
                      .+++||++-.-   .+.|..+.-..-++++.+
T Consensus       207 ~l~~GD~~~~~---~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          207 PVTAGDIIWMG---AHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             EEETTCEEEEC---TTCCEEEEEESSSCEEEE
T ss_pred             EcCCCCEEEEC---CCCCEEEEcCCCCCEEEE
Confidence            68999975422   234443333334445444

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=92.29  E-value=0.51  Score=37.00  Aligned_cols=137  Identities=12%  Similarity=0.075  Sum_probs=69.7

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcc--cccccc--------
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEG--LCDHLP--------   74 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~--~f~~l~--------   74 (234)
                      ++.+++|++|++.+...   |+.   ..+++||++=   +=.+.|+.......++++++.+.+.  ...-+.        
T Consensus        81 ~ee~~~Vl~G~l~~~~~---~~~---~~L~~Gd~~~---~~~~~~H~~~N~~~~~~~~l~v~~~~~~~~g~~p~~~v~~~  151 (261)
T 1rc6_A           81 IETFLYVISGNITAKAE---GKT---FALSEGGYLY---CPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNA  151 (261)
T ss_dssp             EEEEEEEEESEEEEEET---TEE---EEEETTEEEE---ECTTCCCEEEECSSSCEEEEEEEEECCCCTTCCCCCEEEEG
T ss_pred             ceEEEEEEEeEEEEEEC---CEE---EEECCCCEEE---ECCCCCEEEEeCCCCCEEEEEEEeccccCCCCCCceEEcCH
Confidence            45799999999998763   432   4699999863   2234555555444456666655321  111110        


Q ss_pred             CCCchHHHHHHHHHHHHHHhCCC--CCccccceeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          75 RSPSEQELIHSSKREFMEQLGVK--DFSGLDIRVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        75 ~~~p~~~l~~~~~~~l~~~l~~~--~~~~l~~~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                      .+.+.. ..... ..+..+.-+.  ....+......+++|..+-...-.....+++|++|.+.+...   + +   ...+
T Consensus       152 ~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~---~-~---~~~l  222 (261)
T 1rc6_A          152 SELERI-HYEGM-DDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLD---N-N---WIPV  222 (261)
T ss_dssp             GGSCCC---------CEEEECSCCSTTCSEEEEEEEECTTCCBEEEEEESSCEEEEEEESEEEEESS---S-C---EEEE
T ss_pred             HHCCcc-cCCCC-cceEEEEecCcccCCceEEEEEEECCCCccCcccCCCceEEEEEEEeEEEEEEC---C-E---EEEe
Confidence            000000 00000 0000000011  111122233778888755433023457899999999998753   2 1   2468


Q ss_pred             CCCceEE
Q psy8820         153 FPGDMIG  159 (234)
Q Consensus       153 ~~g~~~G  159 (234)
                      ++||++=
T Consensus       223 ~~GD~i~  229 (261)
T 1rc6_A          223 KKGDYIF  229 (261)
T ss_dssp             ETTCEEE
T ss_pred             CCCCEEE
Confidence            8999754

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=92.15  E-value=4.1  Score=33.24  Aligned_cols=51  Identities=20%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+++|..+-..-......+++|++|.+.+.....+|  +.....+++||++-
T Consensus       239 ~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g--~~~~~~l~~GD~~~  289 (361)
T 2vqa_A          239 IHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEG--KASVSRLQQGDVGY  289 (361)
T ss_dssp             EEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTT--CEEEEEECTTCEEE
T ss_pred             EEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCC--cEEEEEECCCCEEE
Confidence            4556666544330233478999999999998654444  23456789999774

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=89.62  E-value=0.29  Score=38.97  Aligned_cols=136  Identities=10%  Similarity=0.132  Sum_probs=70.7

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCC-Cch----
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRS-PSE----   79 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~-~p~----   79 (234)
                      ++.+++|++|++.+...   |+.   ..+++||++=   +=.+.++.......++++++.+.. .+...-.. .|+    
T Consensus        90 ~eE~~~Vl~G~l~v~v~---g~~---~~L~~GD~i~---ip~~~~H~~~N~g~~~~~~l~v~~-~y~~~~g~~~p~~~vg  159 (278)
T 1sq4_A           90 AEAVLFVVEGELSLTLQ---GQV---HAMQPGGYAF---IPPGADYKVRNTTGQHTRFHWIRK-HYQKVDGVPLPEAFVT  159 (278)
T ss_dssp             EEEEEEEEESCEEEEES---SCE---EEECTTEEEE---ECTTCCEEEECCSSSCEEEEEEEE-ECCCCTTCCCCCCEEE
T ss_pred             ceEEEEEEeCEEEEEEC---CEE---EEECCCCEEE---ECCCCcEEEEECCCCCEEEEEEEe-ccccCCCCcCCccccc
Confidence            56799999999988764   333   3699998862   113445444433345566555532 11111000 010    


Q ss_pred             --HHH----HHHHHHHH--HHHhCCCCCcc--ccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccEE
Q psy8820          80 --QEL----IHSSKREF--MEQLGVKDFSG--LDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDVH  148 (234)
Q Consensus        80 --~~l----~~~~~~~l--~~~l~~~~~~~--l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~  148 (234)
                        +.+    .... +..  ..+.-+.....  +.-...++++|..+-. + -..-.+.++|++|...+...   +    .
T Consensus       160 n~~di~~~~~~~~-~~~~~~~r~l~p~~~~~~~~~~~~~l~pG~~i~~~~-~h~~e~~~~il~G~~~~~~~---~----~  230 (278)
T 1sq4_A          160 NEQDIQPLVMPDT-EGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAE-THVMEHGLYVLEGKAVYRLN---Q----D  230 (278)
T ss_dssp             EGGGSCCEECSSG-GGCEEEECSSCTTCTTCSEEEEEEEECSSSEESCCC-CCSEEEEEEEEECEEEEEET---T----E
T ss_pred             chhhcCcccCCCC-CCceeEEEEecCCCcCCCeEEEEEEECCCCCcCCCC-CCCccEEEEEEeCEEEEEEC---C----E
Confidence              000    0000 000  00111111111  2223388999998874 4 34445789999999998753   2    2


Q ss_pred             EEEECCCceEE
Q psy8820         149 LFTAFPGDMIG  159 (234)
Q Consensus       149 ~~~~~~g~~~G  159 (234)
                      ...+++||++-
T Consensus       231 ~~~v~~GD~~~  241 (278)
T 1sq4_A          231 WVEVEAGDFMW  241 (278)
T ss_dssp             EEEEETTCEEE
T ss_pred             EEEeCCCCEEE
Confidence            35679999753

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=88.53  E-value=9.3  Score=31.45  Aligned_cols=50  Identities=22%  Similarity=0.216  Sum_probs=33.6

Q ss_pred             eeecCCCEEEEecCCCC-ceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVED-NKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~-~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+++|...-.. -... ..+++|++|.+++.....+|  ......+++||++-
T Consensus       262 ~~l~pG~~~~~h-~H~~~~E~~~Vl~G~~~~~i~~~~g--~~~~~~l~~GD~~~  312 (385)
T 1j58_A          262 VTVEPGAMRELH-WHPNTHEWQYYISGKARMTVFASDG--HARTFNYQAGDVGY  312 (385)
T ss_dssp             EEECTTCEEEEE-ECSSSCEEEEEEESEEEEEEEEETT--EEEEEEEESSCEEE
T ss_pred             EEECCCcccCce-eCCCCCEEEEEEeCeEEEEEEcCCC--cEEEEEEcCCCEEE
Confidence            456666655433 3334 78999999999998764444  23456789999764

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=87.62  E-value=2.6  Score=27.94  Aligned_cols=50  Identities=14%  Similarity=0.252  Sum_probs=32.6

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i   65 (234)
                      +.+.+++|++|++.+...   ++   ...+.+||++    ++ .+.++...  +.+++.++.+
T Consensus        57 ~~~e~~~vl~G~~~~~i~---~~---~~~l~~Gd~i----~i~~~~~H~~~--~~~~~~~~~i  107 (114)
T 2ozj_A           57 FGDTLYLILQGEAVITFD---DQ---KIDLVPEDVL----MVPAHKIHAIA--GKGRFKMLQI  107 (114)
T ss_dssp             SSCEEEEEEEEEEEEEET---TE---EEEECTTCEE----EECTTCCBEEE--EEEEEEEEEE
T ss_pred             CCCeEEEEEeCEEEEEEC---CE---EEEecCCCEE----EECCCCcEEEE--eCCCcEEEEE
Confidence            456899999999987753   32   3468999875    23 34455544  3466666554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=86.60  E-value=4.9  Score=30.56  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      ..+++|+.+-.. -.+.+.+++|++|.+++....    +.   ..+++||++=--   .+.  ...+.|.+++.++.|
T Consensus        42 ~~~~~G~~~~~h-~h~~~~~~~Vl~G~~~~~i~~----~~---~~l~~Gd~~~~p---~~~--~H~~~a~~~~~~l~i  106 (227)
T 3rns_A           42 FSLAKDEEITAE-AMLGNRYYYCFNGNGEIFIEN----NK---KTISNGDFLEIT---ANH--NYSIEARDNLKLIEI  106 (227)
T ss_dssp             EEECTTCEEEEC-SCSSCEEEEEEESEEEEEESS----CE---EEEETTEEEEEC---SSC--CEEEEESSSEEEEEE
T ss_pred             EEECCCCccCcc-ccCCCEEEEEEeCEEEEEECC----EE---EEECCCCEEEEC---CCC--CEEEEECCCcEEEEE
Confidence            788999998887 778999999999999998632    22   467898865321   133  456678899999877

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=86.57  E-value=5.3  Score=29.18  Aligned_cols=60  Identities=7%  Similarity=0.027  Sum_probs=39.4

Q ss_pred             CCCCEEEEEEcceEEEEEEcCCC---cEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCccc
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLESG---KRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPEGL   69 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~~g---~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~~~   69 (234)
                      ++.+.+|++++|.+.+-..+ +|   +...--.+++||+|    ++ .+.|++  -++..++..+.+.+..
T Consensus        52 ~~~eE~Fy~lkG~m~l~v~d-~g~~~~~~~dv~i~eGdmf----llP~gvpHs--P~r~~e~v~lviErkR  115 (176)
T 1zvf_A           52 NPTPEWFYQKKGSMLLKVVD-ETDAEPKFIDIIINEGDSY----LLPGNVPHS--PVRFADTVGIVVEQDR  115 (176)
T ss_dssp             CSSCEEEEEEESCEEEEEEE-CSSSSCEEEEEEECTTEEE----EECTTCCEE--EEECTTCEEEEEEECC
T ss_pred             CCCceEEEEEeCEEEEEEEc-CCCcccceeeEEECCCCEE----EcCCCCCcC--CcccCCcEEEEEEecC
Confidence            46789999999999887765 23   22223468999887    44 333443  3335788888886544

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=86.39  E-value=3  Score=29.30  Aligned_cols=61  Identities=13%  Similarity=0.208  Sum_probs=38.6

Q ss_pred             CCCCEEEEEEcceEEEEEEcC-CC-cEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcc
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLE-SG-KRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEG   68 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~-~g-~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~   68 (234)
                      +..|.+|+|++|++.+..... ++ -..-.-.+++|+++=    +-.. --.+-.|..+|.++.|...
T Consensus        48 ~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yv----VPkG-veH~p~a~~e~~vLLiEp~  110 (140)
T 3d0j_A           48 HSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYN----VPAE-CWFYSITQKDTKMMYVQDS  110 (140)
T ss_dssp             SSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEE----ECTT-CEEEEEECTTCEEEEEEES
T ss_pred             CCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEE----eCCC-ccCcccCCCceEEEEEEeC
Confidence            356899999999998876632 11 112234689997762    2111 1244566789999988544

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=86.22  E-value=3.9  Score=29.91  Aligned_cols=59  Identities=17%  Similarity=0.245  Sum_probs=38.8

Q ss_pred             CCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEcc-ceeEEEeCccc
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVR-DSELAKLPEGL   69 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~-~~~l~~i~~~~   69 (234)
                      ++.+.+|++++|.+.+-..+ +|+. .--.+++||+|    ++ .+.|+  +.+|.. ++..+.+.+..
T Consensus        53 h~~dE~FyvlkG~m~i~v~d-~g~~-~~v~l~eGE~f----~lP~gvpH--~P~r~~~e~~~lviE~~r  113 (174)
T 1yfu_A           53 DPLEEFFYQLRGNAYLNLWV-DGRR-ERADLKEGDIF----LLPPHVRH--SPQRPEAGSACLVIERQR  113 (174)
T ss_dssp             CSSCEEEEEEESCEEEEEEE-TTEE-EEEEECTTCEE----EECTTCCE--EEEBCCTTCEEEEEEECC
T ss_pred             CCCceEEEEEeeEEEEEEEc-CCce-eeEEECCCCEE----EeCCCCCc--CccccCCCCEEEEEEeCC
Confidence            36789999999999887664 3432 23469999887    34 23344  333455 77887775543

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=85.48  E-value=4  Score=27.25  Aligned_cols=50  Identities=22%  Similarity=0.294  Sum_probs=32.4

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEE
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAK   64 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~   64 (234)
                      +.+.+++|++|++.+...   |+   ...+++||.+=   +=.+.++  ++.+.+++.++.
T Consensus        55 ~~~e~~~Vl~G~~~~~i~---~~---~~~l~~Gd~i~---ip~~~~H--~~~~~~~~~~~~  104 (114)
T 3fjs_A           55 AGPSTIQCLEGEVEIGVD---GA---QRRLHQGDLLY---LGAGAAH--DVNAITNTSLLV  104 (114)
T ss_dssp             SSCEEEEEEESCEEEEET---TE---EEEECTTEEEE---ECTTCCE--EEEESSSEEEEE
T ss_pred             CCcEEEEEEECEEEEEEC---CE---EEEECCCCEEE---ECCCCcE--EEEeCCCcEEEE
Confidence            356899999999988763   32   24689998762   1123344  456667776544

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=84.55  E-value=1.6  Score=29.80  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i   65 (234)
                      +.+.+++|++|++.+..   +|+.   ..+++||++=-   =.+.++..+... +++.++.+
T Consensus        58 ~~~E~~~Vl~G~~~~~~---~g~~---~~l~~GD~v~i---p~g~~H~~~~~~-~~~~~l~v  109 (119)
T 3lwc_A           58 AVDDVMIVLEGRLSVST---DGET---VTAGPGEIVYM---PKGETVTIRSHE-EGALTAYV  109 (119)
T ss_dssp             SSEEEEEEEEEEEEEEE---TTEE---EEECTTCEEEE---CTTCEEEEEEEE-EEEEEEEE
T ss_pred             CCCEEEEEEeCEEEEEE---CCEE---EEECCCCEEEE---CCCCEEEEEcCC-CCeEEEEE
Confidence            45789999999998876   3533   35999998731   133444443332 44554443

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=80.85  E-value=2.4  Score=30.34  Aligned_cols=49  Identities=18%  Similarity=0.331  Sum_probs=31.8

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i   65 (234)
                      .+.+++|++|++.+..   +|+.   ..+++||+|    .+ .+.+...+..  +++.++.+
T Consensus        84 ~eE~~yVLeG~~~l~i---~g~~---~~l~~GD~i----~iP~G~~h~~~n~--~~a~~l~V  133 (151)
T 4axo_A           84 YDEIDYVIDGTLDIII---DGRK---VSASSGELI----FIPKGSKIQFSVP--DYARFIYV  133 (151)
T ss_dssp             SEEEEEEEEEEEEEEE---TTEE---EEEETTCEE----EECTTCEEEEEEE--EEEEEEEE
T ss_pred             CcEEEEEEEeEEEEEE---CCEE---EEEcCCCEE----EECCCCEEEEEeC--CCEEEEEE
Confidence            5678899999998875   4533   459999987    23 2344444433  56665555

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=80.41  E-value=2.6  Score=30.84  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=26.4

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      ++.+++|++|++.+....++|.  ....+++||++
T Consensus        61 a~E~~yVl~G~~~v~v~~~~~~--~~~~l~~GDv~   93 (178)
T 1dgw_A           61 SDLLVLVLEGQAILVLVNPDGR--DTYKLDQGDAI   93 (178)
T ss_dssp             SEEEEEEEESEEEEEEEETTEE--EEEEEETTEEE
T ss_pred             CCEEEEEEeEEEEEEEEeCCCc--EEEEECCCCEE
Confidence            5789999999999988766553  34589999987

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=80.29  E-value=5  Score=25.61  Aligned_cols=50  Identities=12%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             CEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEeCc
Q psy8820           6 DSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKLPE   67 (234)
Q Consensus         6 ~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i~~   67 (234)
                      ..+++|++|.+.+...   ++.   ..+.+||++    ++ .+.++....  .+++.++.+..
T Consensus        51 ~e~~~v~~G~~~~~~~---~~~---~~l~~Gd~~----~ip~~~~H~~~~--~~~~~~l~i~~  101 (102)
T 3d82_A           51 DEVFIVMEGTLQIAFR---DQN---ITLQAGEMY----VIPKGVEHKPMA--KEECKIMIIEP  101 (102)
T ss_dssp             CEEEEEEESEEEEECS---SCE---EEEETTEEE----EECTTCCBEEEE--EEEEEEEEEEE
T ss_pred             cEEEEEEeCEEEEEEC---CEE---EEEcCCCEE----EECCCCeEeeEc--CCCCEEEEEEc
Confidence            6899999999987653   333   358899875    33 344554433  46777777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	234
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.82
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.82
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.82
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.8
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.8
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.8
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.8
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.78
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.76
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.75
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.7
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.7
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.69
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.68
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.66
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.66
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.66
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.66
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.63
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.63
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.62
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.62
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.62
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.62
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.62
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.61
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.6
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.57
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.56
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.56
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.48
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.47
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.45
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.43
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	97.51
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	94.46
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	94.37
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	91.43
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	91.18
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	90.13
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	89.05
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	88.98
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	88.7
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	88.39
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	88.24
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	85.7
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	85.2
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	84.18
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	83.02
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	82.87
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	82.75
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	82.34
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	82.2
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	80.99
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	80.51

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.8e-20  Score=131.98  Aligned_cols=113  Identities=17%  Similarity=0.374  Sum_probs=102.9

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee-CcceEEEEEEcCCeEEEE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT-GEASVFTIQSRLPATIAW  183 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~-~~~~~~~v~A~~~~~~~~  183 (234)
                      .++.|++|++|+++ |++++.+|+|++|.++++..+.+| ++.++..+.+|++||+.+++. +.++.++++|.++|+++.
T Consensus        14 ~~~~~~~g~~i~~~-g~~~~~iy~i~~G~v~~~~~~~~g-~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~   91 (132)
T d1i5za2          14 HIHKYPSKSTLIHQ-GEKAETLYYIVKGSVAVLIKDEEG-KEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAE   91 (132)
T ss_dssp             EEEEECTTCEEECT-TSBCCEEEEEEECCEEEEEECTTC-CEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEE
T ss_pred             EEEEECcCCEEEcC-CCCCCEEEEEEEccceeeeccccc-hhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEEE
Confidence            44799999999999 999999999999999999888777 789999999999999988886 577889999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhcc
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFD  219 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~  219 (234)
                      ||++.|.++++++|.+..++++.+.+|+....+++.
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~l~~rl~~~~~~i~  127 (132)
T d1i5za2          92 ISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVG  127 (132)
T ss_dssp             EEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888877655544

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.82  E-value=5.4e-20  Score=131.67  Aligned_cols=112  Identities=14%  Similarity=0.259  Sum_probs=100.3

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeC----cceEEEEEEcCCeE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTG----EASVFTIQSRLPAT  180 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~----~~~~~~v~A~~~~~  180 (234)
                      +.+.|++|++|+++ |++++++|+|++|.++++..+.+| ++.++..+.||++||+++++.+    .|++++++|.++|+
T Consensus        13 ~~~~~~~g~~i~~~-g~~~~~~y~i~~G~v~v~~~~~~g-~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~~   90 (134)
T d2oz6a2          13 HRRRYTAKSTIIYA-GDRCETLFFIIKGSVTILIEDDDG-REMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECE   90 (134)
T ss_dssp             EEEEECTTCEEECT-TSBCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEE
T ss_pred             EEEEECCCCEEEeC-CCcCCEEEEEEEcccceeeeeccc-ccceeeeccCCCccchHHHhcCccccccceeEEEECCCEE
Confidence            34799999999999 999999999999999999988777 7889999999999999988754    46788999999999


Q ss_pred             EEEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhc
Q psy8820         181 IAWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQF  218 (234)
Q Consensus       181 ~~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~  218 (234)
                      ++.||++.|.++++++|.+...+++.+.+|+....+++
T Consensus        91 vl~i~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~l  128 (134)
T d2oz6a2          91 VAEISYAKFRELSQQDSEILYTLGSQMADRLRKTTRKV  128 (134)
T ss_dssp             EEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888877665543

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.82  E-value=2.2e-19  Score=129.30  Aligned_cols=111  Identities=17%  Similarity=0.321  Sum_probs=102.3

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      ..++|++|++|+++ |++++++|+|++|.++++..+.+| ++.++..+++|++||++.   ..++..++.|.++|+++.|
T Consensus        25 ~~~~y~kg~~i~~~-g~~~~~~y~v~~G~v~~~~~~~~g-~~~~l~~~~~g~~~g~~~---~~~~~~~~~a~~~~~v~~i   99 (139)
T d3e5ua2          25 LIRDFAKGSAVIMP-GEEITSMIFLVEGKIKLDIIFEDG-SEKLLYYAGGNSLIGKLY---PTGNNIYATAMEPTRTCWF   99 (139)
T ss_dssp             EEEEECTTCEEECT-TCCCCSEEEEEESEEEEEEECTTS-CEEEEEEEETTCEECCCS---CCSCEEEEEESSCEEEEEE
T ss_pred             EEEEECCCCEEEeC-CCCCCEEEEEEeccceEEEeeccc-cccceeeccccceeehhh---hhcccccccccccceEEEe
Confidence            34899999999999 999999999999999999988887 789999999999999854   4567889999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccc
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDF  220 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~  220 (234)
                      +++.|.++++++|++...+++.+.+|+..+.+++..
T Consensus       100 ~~~~f~~l~~~~p~l~~~il~~~~~r~~~~~~~i~~  135 (139)
T d3e5ua2         100 SEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAE  135 (139)
T ss_dssp             CHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998887654

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.8e-19  Score=127.91  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=100.2

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce-EEEEEEcCCeEEEE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS-VFTIQSRLPATIAW  183 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~-~~~v~A~~~~~~~~  183 (234)
                      ..+.|++|++|+++ |++++++|+|++|.++++....+| ++..+..+++|++||+.+++.+.++ .++++|.++|+++.
T Consensus        11 ~~~~~~kg~~l~~~-g~~~~~~y~i~~G~v~~~~~~~~g-~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~vl~   88 (129)
T d1o5la1          11 KVIVFRKGEIVKHQ-DDPIEDVLILLEGTLKTEHVSENG-KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILS   88 (129)
T ss_dssp             EEEEECTTCEEECT-TCBCCEEEEEEESCEEEEEECTTS-CEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEE
T ss_pred             EEEEECCCCEEEEC-CCcCcEEEEEeccccEEEEeeccc-ccchhhhcccccccchHHHhccCCCccEEEEeecccEEEE
Confidence            34899999999999 999999999999999999888777 7889999999999999999987765 58999999999999


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ  217 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  217 (234)
                      ||++.|.++++++|.+..++++.+..++....++
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~  122 (129)
T d1o5la1          89 IPKEVFLDLLMKDRELLLFFLKDVSEHFRVVSEK  122 (129)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EcHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988888776665443

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.80  E-value=6.6e-20  Score=132.49  Aligned_cols=109  Identities=15%  Similarity=0.138  Sum_probs=97.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+.+ |++++++|+|.+|.++++..+.+| ++.++..++||++||+.+++.+.|+.++++|.++|+++.||+
T Consensus        27 ~~~~~g~~l~~~-g~~~~~ly~v~~G~v~~~~~~~~g-~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~s~v~~i~~  104 (142)
T d2gaua2          27 FPCKKASTVFSE-GDIPNNLFYLYEGKIKILREGVYG-RFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPV  104 (142)
T ss_dssp             EEECTTCEEECT-TCCCCEEEEEEESCEEEEC------CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEeC-CCccceEEEEEecceeeEeecccc-ceeeeecccccchhhhhhhhccCCceeEEEecCCEEEEEEeH
Confidence            699999999999 999999999999999999888776 788899999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ  217 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  217 (234)
                      +.|.+++.++|.+..++++.+.+|+.....+
T Consensus       105 ~~~~~l~~~~~~~~~~~~~~l~~rl~~~~~~  135 (142)
T d2gaua2         105 EAIEALLKGNTSFCRYFLKALAKELGYAERR  135 (142)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887766443

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.80  E-value=3.3e-19  Score=127.24  Aligned_cols=107  Identities=12%  Similarity=0.165  Sum_probs=97.5

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      ++++|++|++|+++ |+.++++|+|++|.++++... +| ++.++..++||++||+.       +.++++|.++|+++.|
T Consensus        23 ~~~~~~kG~~i~~~-g~~~~~ly~v~~G~v~~~~~~-~g-~e~~l~~~~~g~~f~~~-------~~~~v~A~~~s~v~~i   92 (132)
T d1ft9a2          23 RSKIHAKGSLVCTG-EGDENGVFVVVDGRLRVYLVG-EE-REISLFYLTSGDMFCMH-------SGCLVEATERTEVRFA   92 (132)
T ss_dssp             EEEEECTTCEEECT-TCCCCCEEEEEESEEEEEEEE-TT-EEEEEEEEETTCEEESC-------SSCEEEESSCEEEEEE
T ss_pred             EEEEecCCcEEECC-CCCCCEEEEEEeCeEeeeccc-cc-cceeecccccccccccc-------ccccceeccceeeeee
Confidence            45999999999999 999999999999999999765 44 68899999999999864       4678999999999999


Q ss_pred             CHHhHHHHHhcchHHHHHHHHHHHHhhchhhhhccce
Q psy8820         185 PQDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQFDFA  221 (234)
Q Consensus       185 ~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  221 (234)
                      +++.|.++++++|.+..++++.+.+|++..++.++..
T Consensus        93 ~~~~~~~ll~~~p~~~~~l~~~l~~rl~~~~~~i~~l  129 (132)
T d1ft9a2          93 DIRTFEQKLQTCPSMAWGLIAILGRALTSCMRTIEDL  129 (132)
T ss_dssp             CHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998877653

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.80  E-value=2e-19  Score=130.62  Aligned_cols=109  Identities=7%  Similarity=0.029  Sum_probs=100.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce-EEEEEEcCCeEEEEeC
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS-VFTIQSRLPATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~-~~~v~A~~~~~~~~i~  185 (234)
                      +.|++|++|+.+ |++++++|+|++|.++++....+| ++.++..+.+|++||+.+++.+.++ .+++.|.++|+++.||
T Consensus        34 ~~~~~g~~i~~~-g~~~~~iy~i~~G~v~v~~~~~~g-~~~~~~~~~~g~~fGe~~~~~~~~~~~~~v~a~~~~~vl~i~  111 (147)
T d1zyba2          34 IKHKAGETIIKS-GNPCTQLCFLLKGEISIVTNAKEN-IYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCIS  111 (147)
T ss_dssp             EEECTTCEEECT-TSBCCEEEEEEESEEEEEEECGGG-SCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEE
T ss_pred             EEECCCCEEEec-cCCccEEEEEecceEEEEEEcCCC-CEEEEEEcCCCCEeccchhhcccccccceeeecceeeeeehh
Confidence            689999999999 999999999999999999988776 7888999999999999999877775 6899999999999999


Q ss_pred             HHhHHHHHhcchHHHHHHHHHHHHhhchhhhh
Q psy8820         186 QDDCSTLIDADMNVTLKIAHSVLKRMSPFVRQ  217 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~  217 (234)
                      ++.|.+++.++|.+...+++.+++|+....++
T Consensus       112 ~~~~~~~~~~~p~~~~~~~~~ls~r~~~l~~r  143 (147)
T d1zyba2         112 KAFVLSDLFRYDIFRLNYMNIVSNRAQNLYSR  143 (147)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888776554

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=4.5e-19  Score=126.46  Aligned_cols=93  Identities=17%  Similarity=0.242  Sum_probs=87.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |+.++++|+|.+|.++++....+|.+...+..++||++||+.+++.+.++.++++|.++|+++.|++
T Consensus        28 ~~~~~g~~I~~~-Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~~~~~~~~~t~~a~~~~~~~~i~~  106 (132)
T d1ne6a2          28 VQFEDGQKIVVQ-GEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDR  106 (132)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHHHHTSSCSSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEEc-CCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeeecCCCceeEEEEEcccEEEEEEEH
Confidence            599999999999 9999999999999999998887775556689999999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHH
Q psy8820         187 DDCSTLIDADMNVT  200 (234)
Q Consensus       187 ~~~~~l~~~~p~~~  200 (234)
                      ++|.++++++|++.
T Consensus       107 ~~~~~ll~~~p~~~  120 (132)
T d1ne6a2         107 PRFERVLGPCSDIL  120 (132)
T ss_dssp             HHHHHHTGGGHHHH
T ss_pred             HHHHHHHHHCHHHH
Confidence            99999999999874

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.8e-18  Score=124.46  Aligned_cols=109  Identities=13%  Similarity=0.177  Sum_probs=96.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCC-----CccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-----SNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATI  181 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-----~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~  181 (234)
                      +.|++|++|+++ |+.++.+|+|++|.|+++....++     ++...+..+++|++||+.+++.+.|+.++++|.++|++
T Consensus        28 ~~~~~ge~i~~~-G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~  106 (147)
T d1cx4a2          28 KVYNDGEQIIAQ-GDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKC  106 (147)
T ss_dssp             EEECTTCEEECT-TCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEEEE
T ss_pred             EEECCCCEEEeC-CCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCEEE
Confidence            699999999999 999999999999999998765421     24567889999999999999999999999999999999


Q ss_pred             EEeCHHhHHHHHhcchHHHHHHHHHHHHhhchhhh
Q psy8820         182 AWLPQDDCSTLIDADMNVTLKIAHSVLKRMSPFVR  216 (234)
Q Consensus       182 ~~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~  216 (234)
                      +.|++++|.+++.++|++....+..+.+++.+...
T Consensus       107 ~~i~~~~f~~ll~~~~~i~~~~~~~~~~~L~~l~~  141 (147)
T d1cx4a2         107 LAMDVQAFERLLGPCMEIMKRNIATYEEQLVALFG  141 (147)
T ss_dssp             EEEEHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999988877777777766654

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.70  E-value=1.1e-17  Score=119.41  Aligned_cols=96  Identities=19%  Similarity=0.372  Sum_probs=88.4

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.|++|++|+++ |++++++|+|.+|.++++..+  +      ..+.||++||+.+++.+.|+.++++|.++|+++.|++
T Consensus        37 ~~~~~g~~i~~~-G~~~~~~y~I~~G~v~v~~~~--~------~~l~~G~~~G~~~~l~~~~~~~~~~a~~~~~i~~i~~  107 (133)
T d1vp6a_          37 RTVPAGAVICRI-GEPGDRMFFVVEGSVSVATPN--P------VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHS  107 (133)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEESCEEECSSS--C------EEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEH
T ss_pred             EEECCCCEEEeC-CCCCccceeeeccccEEEEee--e------eeeccCcccccccccCCCcccceEEECCCEEEEEEeH
Confidence            799999999999 999999999999999997542  2      2479999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhh
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRM  211 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~  211 (234)
                      ++|.+++.++|.+...+++.+..|+
T Consensus       108 ~~~~~l~~~~p~~~~~~~~~~~~R~  132 (133)
T d1vp6a_         108 ADFQMLCSSSPEIAEIFRKTALERR  132 (133)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            9999999999999999988888764

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2e-17  Score=118.31  Aligned_cols=93  Identities=15%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+++ |++++++|+|.+|.++++.... | .+..+..+.+|++||+++++.+.|+.++++|.++|.++.|++
T Consensus        42 ~~~~~g~~I~~~-G~~~~~~y~I~~G~v~v~~~~~-~-~~~~~~~l~~g~~fg~~~l~~~~~~~~s~~a~~~~~~~~i~~  118 (136)
T d1cx4a1          42 KLVKEGEHVIDQ-GDDGDNFYVIDRGTFDIYVKCD-G-VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDR  118 (136)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEECEEEEEEEET-T-EEEEEEEEESSCEECHHHHHHCCCCCSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEEC-CCcchhhhhhhhheeEEeeccc-c-ceeeeeccCCccccchHHHhCCCcceEEEEECCCEEEEEEeH
Confidence            799999999999 9999999999999999986653 3 577788899999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHH
Q psy8820         187 DDCSTLIDADMNVTLK  202 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~  202 (234)
                      +.|.+++++++.+...
T Consensus       119 ~~f~~ll~~~~~~~r~  134 (136)
T d1cx4a1         119 VTFRRIIVKNNAKKRK  134 (136)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCHHHHHh
Confidence            9999999999977543

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=5.1e-17  Score=116.22  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=80.2

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      +.+++|++|+++ |++++.+|+|.+|.++++..      ...+..++||++||+++++.+.|+.++++|.++|.++.|++
T Consensus        46 ~~~~~ge~I~~~-gd~~~~~yiI~~G~v~v~~~------~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~  118 (136)
T d1ne6a1          46 VSFIAGETVIQQ-GDEGDNFYVIDQGEMDVYVN------NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDR  118 (136)
T ss_dssp             EEECTTCEEECT-TSCCCEEEEEEESCEEEEET------TEEEEEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEEH
T ss_pred             EEECCCCEEEeC-CCCcceeeeecCCceeeecc------ccccceeccccccccHHHcCCCcceEEEEEccCEEEEEEEH
Confidence            899999999999 99999999999999999863      34566799999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHH
Q psy8820         187 DDCSTLIDADMNV  199 (234)
Q Consensus       187 ~~~~~l~~~~p~~  199 (234)
                      ++|.+++.++|..
T Consensus       119 ~~f~~ll~~~~~~  131 (136)
T d1ne6a1         119 DSYRRILMGSTLR  131 (136)
T ss_dssp             HHHHHHTHHHHHH
T ss_pred             HHHHHHHhhCHHH
Confidence            9999999999865

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.66  E-value=1.2e-16  Score=113.91  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=74.2

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccC----CCceeEEEEccceeEEEeCccccccccCC
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTS----TSRNTTVMAVRDSELAKLPEGLCDHLPRS   76 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~----~~r~~tv~A~~~~~l~~i~~~~f~~l~~~   76 (234)
                      |||+++.+|+|++|.|+++....+|++..+..++||++|||++++.+    .||+++++|.++|+++.+|++.|..++..
T Consensus        26 ~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~~~a~~~~~vl~i~~~~~~~~~~~  105 (134)
T d2oz6a2          26 AGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQ  105 (134)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSEEEESSCEEEEEEEHHHHHHHHHH
T ss_pred             CCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeEEEECCCEEEEEEeHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999864    47999999999999999999999999999


Q ss_pred             Cch
Q psy8820          77 PSE   79 (234)
Q Consensus        77 ~p~   79 (234)
                      +|+
T Consensus       106 ~~~  108 (134)
T d2oz6a2         106 DSE  108 (134)
T ss_dssp             CHH
T ss_pred             CHH
Confidence            983

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.6e-16  Score=112.87  Aligned_cols=78  Identities=19%  Similarity=0.294  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccC-CCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTS-TSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~-~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++.+|+|++|.++++...++|++..+..+.+|++||+.+++.+ .|+.++++|.++|+++.+|++.|..++..+|
T Consensus        27 ~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~~~~~~~  105 (132)
T d1i5za2          27 QGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNP  105 (132)
T ss_dssp             TTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEEEESSCEEEEEEEHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEEEEccceEEEEEcHHHHHHHHhhCH
Confidence            79999999999999999999999999999999999999999999975 6889999999999999999999999999888

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=7.5e-17  Score=117.91  Aligned_cols=94  Identities=21%  Similarity=0.245  Sum_probs=84.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCC-CccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeC
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDG-SNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLP  185 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g-~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~  185 (234)
                      +.+++|++|+++ |+.++.+|+|.+|.+.++....++ ++...+..+++|++||+ +++.+.|+.++++|.++|+++.|+
T Consensus        50 ~~~~~ge~I~~~-gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~  127 (155)
T d1o7fa2          50 ENLEKGITLFRQ-GDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIE  127 (155)
T ss_dssp             EEECTTCEEECT-TSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEE
T ss_pred             EEECCCCEEEeC-CCcceeeEEEeccchheeeecccccccccccccccccccchh-hhhcCCCceEEEEECCCEEEEEEe
Confidence            899999999999 999999999999999998665442 25677889999999998 889999999999999999999999


Q ss_pred             HHhHHHHHhcchHHHHH
Q psy8820         186 QDDCSTLIDADMNVTLK  202 (234)
Q Consensus       186 ~~~~~~l~~~~p~~~~~  202 (234)
                      +++|.++++++|++...
T Consensus       128 ~~~f~~il~~~~~~~~~  144 (155)
T d1o7fa2         128 QEDFKALWEKYRQYMAG  144 (155)
T ss_dssp             HHHHHHHHHHHGGGTTT
T ss_pred             HHHHHHHHHHCHHHHHH
Confidence            99999999999987643

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.1e-16  Score=121.15  Aligned_cols=99  Identities=14%  Similarity=0.244  Sum_probs=89.9

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEeCH
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWLPQ  186 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i~~  186 (234)
                      ..+++|++|+++ |+.++.+|||.+|.|.++...  +    ....+++|++||+.+++.+.++.++++|.++|+++.|++
T Consensus        94 ~~~~~g~~I~~~-g~~~~~ly~i~~G~v~v~~~~--~----~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~  166 (193)
T d1q3ea_          94 EVFQPGDYIIRE-GTIGKKMYFIQHGVVSVLTKG--N----KEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSV  166 (193)
T ss_dssp             EEECTTCEEECT-TSBCCEEEEEEECCEEEEC-C--C----CEEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEH
T ss_pred             HhhccCceeccc-CCCCcceeEeeeeeEEeecCC--c----ceeeeccceeeeeeeccCCCcccccceecCceEEEEEeH
Confidence            899999999999 999999999999999997532  1    234689999999999999999999999999999999999


Q ss_pred             HhHHHHHhcchHHHHHHHHHHHHhhc
Q psy8820         187 DDCSTLIDADMNVTLKIAHSVLKRMS  212 (234)
Q Consensus       187 ~~~~~l~~~~p~~~~~~~~~~~~~~~  212 (234)
                      ++|.++++++|.+...+...+.+|+.
T Consensus       167 ~~f~~ll~~~p~~~~~~~~~~~~RL~  192 (193)
T d1q3ea_         167 DNFNEVLEEYPMMRRAFETVAIDRLD  192 (193)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCHHHHHHHHHHHHHHcC
Confidence            99999999999999999888888765

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.1e-16  Score=112.83  Aligned_cols=79  Identities=23%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcC------CCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCcccccccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLE------SGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLP   74 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~------~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~   74 (234)
                      |||+++++|+|++|.|+++....      +++...+..+++|++|||.+++.+.||.+|++|.++|+++.|++++|..++
T Consensus        39 ~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll  118 (147)
T d1cx4a2          39 QGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL  118 (147)
T ss_dssp             TTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHC
T ss_pred             CCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHH
Confidence            69999999999999999987654      355677899999999999999999999999999999999999999999999


Q ss_pred             CCCch
Q psy8820          75 RSPSE   79 (234)
Q Consensus        75 ~~~p~   79 (234)
                      ...|+
T Consensus       119 ~~~~~  123 (147)
T d1cx4a2         119 GPCME  123 (147)
T ss_dssp             GGGHH
T ss_pred             HHCHH
Confidence            99883

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.63  E-value=1.3e-16  Score=114.92  Aligned_cols=79  Identities=14%  Similarity=0.277  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +|++++.+|+|.+|.++++...++|++..+..+++|++||+.+++.+.|+.++++|+++|+++.||++.|..++.++|.
T Consensus        38 ~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~~~~a~~~s~v~~i~~~~~~~l~~~~~~  116 (142)
T d2gaua2          38 EGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTS  116 (142)
T ss_dssp             TTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred             CCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCceeEEEecCCEEEEEEeHHHHHHHHHHCHH
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999999999983

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=1.8e-16  Score=113.53  Aligned_cols=90  Identities=18%  Similarity=0.087  Sum_probs=78.7

Q ss_pred             eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeee---------CcceEEEEEEcCC
Q psy8820         108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLT---------GEASVFTIQSRLP  178 (234)
Q Consensus       108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~---------~~~~~~~v~A~~~  178 (234)
                      .|++|++|+++ |++++.+|+|.+|.|+++....++........++||++|||++++.         ..++.+||+|+++
T Consensus        33 ~~~~ge~I~~~-Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~ll~~~~~~~~~~~~~r~~tv~a~t~  111 (137)
T d1wgpa_          33 LFTEKSYLVRE-GDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTE  111 (137)
T ss_dssp             CBCTTEEEECT-TSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSC
T ss_pred             EECCCCEEEec-ccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchhHhccCCCcccccccccCcEEEEeee
Confidence            89999999999 9999999999999999987766654566778899999999988753         2345679999999


Q ss_pred             eEEEEeCHHhHHHHHhcchH
Q psy8820         179 ATIAWLPQDDCSTLIDADMN  198 (234)
Q Consensus       179 ~~~~~i~~~~~~~l~~~~p~  198 (234)
                      |+++.|++++|.+++++++.
T Consensus       112 ~~l~~L~~~dl~~il~~~~r  131 (137)
T d1wgpa_         112 VEAFALIADELKFVASQFRR  131 (137)
T ss_dssp             BEEEEEEHHHHHHHHHHHCC
T ss_pred             EEEEEEEHHHHHHHHHHhcc
Confidence            99999999999999988764

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.62  E-value=5.4e-16  Score=109.56  Aligned_cols=78  Identities=23%  Similarity=0.278  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCc-eeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSR-NTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r-~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      |||+++++|+|++|.++++....+|++..+..+++|++||+.+++.+.|+ +++++|.++|+++.||++.|..++..+|
T Consensus        24 ~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~vl~i~~~~~~~~~~~~~  102 (129)
T d1o5la1          24 QDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDR  102 (129)
T ss_dssp             TTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeecccEEEEEcHHHHHHHHHhCH
Confidence            69999999999999999999999999999999999999999999988875 6899999999999999999999999998

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.62  E-value=7.1e-16  Score=111.53  Aligned_cols=78  Identities=6%  Similarity=0.003  Sum_probs=74.6

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCc-eeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSR-NTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r-~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|++|.|+++....+|++..+..+++|++|||.+++.+.++ +++++|.++|+++.||++.|..++..+|
T Consensus        45 ~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fGe~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p  123 (147)
T d1zyba2          45 SGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYD  123 (147)
T ss_dssp             TTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSH
T ss_pred             ccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEeccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCH
Confidence            69999999999999999999999999999999999999999999988875 7999999999999999999999999999

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.62  E-value=2e-16  Score=112.41  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=73.7

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEE-EEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRK-EEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~-~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++...++|++. .+..+++|++||+.+++.+.||++|++|.++|+++.||++.|..++..+|
T Consensus        39 ~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p  117 (132)
T d1ne6a2          39 QGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCS  117 (132)
T ss_dssp             TTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGH
T ss_pred             cCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeeecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCH
Confidence            6999999999999999999988887764 48899999999999999999999999999999999999999999999998

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=5.7e-16  Score=108.86  Aligned_cols=85  Identities=20%  Similarity=0.266  Sum_probs=76.9

Q ss_pred             eecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCC-eEEEEeCH
Q psy8820         108 HIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLP-ATIAWLPQ  186 (234)
Q Consensus       108 ~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~-~~~~~i~~  186 (234)
                      .+++|++|+++ |++++.+|+|.+|.++++...     ......++||++||+.+++.+.|+.++++|.++ |+++.|++
T Consensus        38 ~~~~ge~I~~~-gd~~~~lyii~~G~v~~~~~~-----~~~~~~~~~G~~fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~  111 (124)
T d1o7fa3          38 HAKGGTVLFNQ-GEEGTSWYIILKGSVNVVIYG-----KGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDK  111 (124)
T ss_dssp             ECSTTCEEECT-TSCCCEEEEEEESEEEEEETT-----TEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEH
T ss_pred             EcCCCCEEEEC-CCcCceEEEEEcceEEEEEee-----eeecccccCCcchhhhHhhCCCceeeEEEEEeCcEEEEEEcH
Confidence            45789999999 999999999999999998532     456678899999999999999999999999986 89999999


Q ss_pred             HhHHHHHhcchH
Q psy8820         187 DDCSTLIDADMN  198 (234)
Q Consensus       187 ~~~~~l~~~~p~  198 (234)
                      ++|.++++++|+
T Consensus       112 ~~f~~il~~~~~  123 (124)
T d1o7fa3         112 EDFNRILRDVEA  123 (124)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHhhccC
Confidence            999999999884

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=1.6e-16  Score=113.67  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=67.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++.+|+|.+|.+++....     ..+..+++|++|||++++.+.||++|++|.++|+++.||++.|..+++++|
T Consensus        57 ~gd~~~~~yiI~~G~v~v~~~~-----~~~~~l~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~  129 (136)
T d1ne6a1          57 QGDEGDNFYVIDQGEMDVYVNN-----EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGST  129 (136)
T ss_dssp             TTSCCCEEEEEEESCEEEEETT-----EEEEEECTTCEECCHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHH
T ss_pred             CCCCcceeeeecCCceeeeccc-----cccceeccccccccHHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCH
Confidence            6999999999999999988643     456789999999999999999999999999999999999999999988877

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=2.6e-16  Score=112.41  Aligned_cols=77  Identities=18%  Similarity=0.217  Sum_probs=71.5

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++... +|+...+..+++|++|||.+++.+.||++|++|.++|+++.|+++.|..++..++
T Consensus        53 ~G~~~~~~y~I~~G~v~v~~~~-~~~~~~~~~l~~g~~fg~~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~  129 (136)
T d1cx4a1          53 QGDDGDNFYVIDRGTFDIYVKC-DGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNN  129 (136)
T ss_dssp             TTSCCCEEEEEEECEEEEEEEE-TTEEEEEEEEESSCEECHHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHH
T ss_pred             CCCcchhhhhhhhheeEEeecc-ccceeeeeccCCccccchHHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCH
Confidence            6999999999999999997654 6777888999999999999999999999999999999999999999999888776

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.57  E-value=5e-15  Score=106.04  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=71.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      |||+++++|+|++|.++++...++|++..+..+++|++|||+.   ..++..+++|.++|+++.||++.|..+++.+|+
T Consensus        38 ~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~---~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~  113 (139)
T d3e5ua2          38 PGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY---PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDED  113 (139)
T ss_dssp             TTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS---CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTH
T ss_pred             CCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh---hhcccccccccccceEEEeeHHHHHHHHhcCHH
Confidence            6999999999999999999999999999999999999999854   457899999999999999999999999999993

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.6e-15  Score=106.50  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccc-eeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRD-SELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~-~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++.+|+|.+|.|++....    ...+..+++|++|||.+++.+.||++|++|.++ |+++.|+++.|..++++.|
T Consensus        48 ~gd~~~~lyii~~G~v~~~~~~----~~~~~~~~~G~~fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~  122 (124)
T d1o7fa3          48 QGEEGTSWYIILKGSVNVVIYG----KGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVE  122 (124)
T ss_dssp             TTSCCCEEEEEEESEEEEEETT----TEEEEEEETTCEECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTT
T ss_pred             CCCcCceEEEEEcceEEEEEee----eeecccccCCcchhhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhcc
Confidence            6999999999999999987542    245678999999999999999999999999997 7999999999999888776

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.5e-15  Score=110.82  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=70.1

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcC--CCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLE--SGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~--~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++++|+|.+|.|+++....  +|+...+..+++|++||| +++.+.||++|++|.++|+++.|+++.|..++.++|
T Consensus        61 ~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~  139 (155)
T d1o7fa2          61 QGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYR  139 (155)
T ss_dssp             TTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHG
T ss_pred             CCCcceeeEEEeccchheeeecccccccccccccccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCH
Confidence            69999999999999999887654  356788899999999999 899999999999999999999999999999888777

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=1e-14  Score=110.11  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=66.7

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +||+++++|+|.+|.|.++..  +++   ...+++|++|||.+++++.||.+|++|.++|+++.|++++|..++..+|+
T Consensus       105 ~g~~~~~ly~i~~G~v~v~~~--~~~---~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~  178 (193)
T d1q3ea_         105 EGTIGKKMYFIQHGVVSVLTK--GNK---EMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPM  178 (193)
T ss_dssp             TTSBCCEEEEEEECCEEEEC---CCC---EEEECTTCEECHHHHHHCSBCSSEEEESSCEEEEEEEHHHHHHHHHHSGG
T ss_pred             cCCCCcceeEeeeeeEEeecC--Ccc---eeeeccceeeeeeeccCCCcccccceecCceEEEEEeHHHHHHHHHHCHH
Confidence            699999999999999998754  232   34689999999999999999999999999999999999999999999994

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.47  E-value=1e-14  Score=103.61  Aligned_cols=71  Identities=20%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPS   78 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p   78 (234)
                      +||+++.+|+|.+|.|+++..  ++     ..+++|++|||.+++.+.|+.++++|.++|+++.||++.|..++..+|
T Consensus        48 ~G~~~~~~y~I~~G~v~v~~~--~~-----~~l~~G~~~G~~~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p  118 (133)
T d1vp6a_          48 IGEPGDRMFFVVEGSVSVATP--NP-----VELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP  118 (133)
T ss_dssp             TTSCCCEEEEEEESCEEECSS--SC-----EEECTTCEECHHHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCH
T ss_pred             CCCCCccceeeeccccEEEEe--ee-----eeeccCcccccccccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCH
Confidence            699999999999999998754  23     248999999999999999999999999999999999999999999998

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.45  E-value=1.2e-13  Score=97.80  Aligned_cols=71  Identities=14%  Similarity=0.136  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE   79 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~   79 (234)
                      +|++++++|+|++|.++++... +|++..+..+++|++||+.       ++++++|+++|+++.||++.|..++.++|+
T Consensus        36 ~g~~~~~ly~v~~G~v~~~~~~-~g~e~~l~~~~~g~~f~~~-------~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~  106 (132)
T d1ft9a2          36 GEGDENGVFVVVDGRLRVYLVG-EEREISLFYLTSGDMFCMH-------SGCLVEATERTEVRFADIRTFEQKLQTCPS  106 (132)
T ss_dssp             TTCCCCCEEEEEESEEEEEEEE-TTEEEEEEEEETTCEEESC-------SSCEEEESSCEEEEEECHHHHHHHHHHCGG
T ss_pred             CCCCCCEEEEEEeCeEeeeccc-cccceeecccccccccccc-------ccccceeccceeeeeehHHHHHHHHHHHHH
Confidence            6999999999999999999775 5888999999999999974       578999999999999999999999999984

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.43  E-value=7.8e-15  Score=104.78  Aligned_cols=77  Identities=21%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEEcceEEEEEEcCCCc-EEEEEeecCCcEeeeecccc---------CCCceeEEEEccceeEEEeCcccc
Q psy8820           1 QYDRSDSTYIVLTGRLRSVKTLESGK-RKEEAEYSKGDLVGLIEMVT---------STSRNTTVMAVRDSELAKLPEGLC   70 (234)
Q Consensus         1 ~Gd~~~~~yii~~G~v~v~~~~~~g~-~~~~~~~~~G~~fGe~~ll~---------~~~r~~tv~A~~~~~l~~i~~~~f   70 (234)
                      +||+++++|+|.+|.|+++....++. ...+..+++|++|||++++.         ..+|++||+|+++|+++.|++++|
T Consensus        43 ~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl  122 (137)
T d1wgpa_          43 EGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADEL  122 (137)
T ss_dssp             TTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHH
T ss_pred             cccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchhHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHH
Confidence            69999999999999999887654432 34567899999999999873         236889999999999999999999


Q ss_pred             ccccCCC
Q psy8820          71 DHLPRSP   77 (234)
Q Consensus        71 ~~l~~~~   77 (234)
                      +.++.++
T Consensus       123 ~~il~~~  129 (137)
T d1wgpa_         123 KFVASQF  129 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8775543

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=97.51  E-value=0.0026  Score=40.17  Aligned_cols=103  Identities=13%  Similarity=0.192  Sum_probs=76.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcce--EEEEEEc-CCeEEEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEAS--VFTIQSR-LPATIAW  183 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~--~~~v~A~-~~~~~~~  183 (234)
                      +.+++.+.|+.| =++.+++.|+-+|..++...+.+|  ...-...-.|.+.-...++..+.+  .++...+ +....+.
T Consensus        14 k~f~kke~ifnq-wdp~eycifl~dgiakltsiseng--~imnlqyykgafiimsg~idt~~~lgyynlevise~atayv   90 (131)
T d2bgca2          14 KQFHKKELIFNQ-WDPQEYCIFLYDGITKLTSISENG--TIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYV   90 (131)
T ss_dssp             EEEETTCEEECT-TCCCCEEEEEEESEEEEEEECTTS--CEEEEEEEESSEEEESBCTTTCCBSCCCEEEECSSEEEEEE
T ss_pred             hhhchhheeecc-cCcceeEEeeecchHHhcccccCC--cEEeeeeccccEEEEecccccCCccceeeeeeehhcceeee
Confidence            689999999999 999999999999999999988877  333333445655544444433333  2466665 4488899


Q ss_pred             eCHHhHHHHHhcchHHHHHHHHHHHHhhc
Q psy8820         184 LPQDDCSTLIDADMNVTLKIAHSVLKRMS  212 (234)
Q Consensus       184 i~~~~~~~l~~~~p~~~~~~~~~~~~~~~  212 (234)
                      |.-+++.++++++-.-..++.+.+-+.++
T Consensus        91 ikisdlk~lvs~dl~~~fyi~~tlqkqvs  119 (131)
T d2bgca2          91 IKINELKELLSKNLTHFFYVFQTLQKQVS  119 (131)
T ss_dssp             EEHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            99999999999998877777776665443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.079  Score=39.73  Aligned_cols=137  Identities=14%  Similarity=0.067  Sum_probs=72.5

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCch-----
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSE-----   79 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~-----   79 (234)
                      .+.+++|++|++.+...   |+   ...+.+||++=   +-.+.++......-++++++.+.+. +.......+.     
T Consensus        73 ~Ee~~~Vl~G~~~~~~~---~~---~~~l~~Gd~~~---~p~~~~H~~~N~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~  142 (253)
T d1rc6a_          73 IETFLYVISGNITAKAE---GK---TFALSEGGYLY---CPPGSLMTFVNAQAEDSQIFLYKRR-YVPVEGYAPWLVSGN  142 (253)
T ss_dssp             EEEEEEEEESEEEEEET---TE---EEEEETTEEEE---ECTTCCCEEEECSSSCEEEEEEEEE-CCCCTTCCCCCEEEE
T ss_pred             cEEEEEEEECEEEEEEC---CE---EEEECCCCEEE---ECCCCCEEEEECCCCCEEEEEEEec-cccCCCccceeeccc
Confidence            35688899999988752   43   23588999763   2345555555555666777776321 1111111110     


Q ss_pred             -HHH-HHHHHHHHHHHhC-C---CCCccccceeeeecCCCEEE-EecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          80 -QEL-IHSSKREFMEQLG-V---KDFSGLDIRVEHIPGGTCLV-REEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        80 -~~l-~~~~~~~l~~~l~-~---~~~~~l~~~~~~~~~g~~i~-~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                       ... ............+ +   ....-+...+..+++|..+- .. -...+.+++|++|...+...   + +   ...+
T Consensus       143 ~~d~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~PG~~~~~~h-~h~~ee~~~vl~G~g~~~i~---~-~---~~~~  214 (253)
T d1rc6a_         143 ASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIE-THVQEHGAYILSGQGVYNLD---N-N---WIPV  214 (253)
T ss_dssp             GGGSCCC-------CEEEECSCCSTTCSEEEEEEEECTTCCBEEEE-EESSCEEEEEEESEEEEESS---S-C---EEEE
T ss_pred             ccccccccccccceeEEEEecCccccccEEEEEEEECCCceEeEEE-eCCceEEEEEeCCEEEEEEC---C-E---EEEe
Confidence             000 0000000000000 1   11112333448888987653 44 55678899999999998752   2 2   2456


Q ss_pred             CCCceEE
Q psy8820         153 FPGDMIG  159 (234)
Q Consensus       153 ~~g~~~G  159 (234)
                      ++||++=
T Consensus       215 ~~GD~i~  221 (253)
T d1rc6a_         215 KKGDYIF  221 (253)
T ss_dssp             ETTCEEE
T ss_pred             cCCCEEE
Confidence            8999664

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.37  E-value=0.016  Score=43.61  Aligned_cols=137  Identities=15%  Similarity=0.128  Sum_probs=75.8

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCCchHHHH-
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSPSEQELI-   83 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~p~~~l~-   83 (234)
                      .+.|++|++|++.+...   |+.   ..+++||++=   +=.+.++......-+++.++.+.+ .|...-...|..... 
T Consensus        70 ~Ee~~yVl~G~~~~~~~---~~~---~~l~~Gd~~~---~p~~~~H~~~N~~~~~~~~l~v~~-~y~~~~~~~p~~~~~~  139 (250)
T d1sefa_          70 IQTLVYVIDGRLRVSDG---QET---HELEAGGYAY---FTPEMKMYLANAQEADTEVFLYKK-RYQPLAGHQPYKVVGS  139 (250)
T ss_dssp             EEEEEEEEESEEEEECS---SCE---EEEETTEEEE---ECTTSCCEEEESSSSCEEEEEEEE-ECCCCTTCCCCCEEEE
T ss_pred             cEEEEEEEeeEEEEEEC---CEE---EEEcCCCEEE---EcCCCcEEEEECCCCCEEEEEEEE-eccccccccccccccc
Confidence            35688999999987753   433   3588998752   224556666556667778887733 333322222210000 


Q ss_pred             -HHH-------HHHHHHH--hCCCCCccccceeeeecCCCEEE-EecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEE
Q psy8820          84 -HSS-------KREFMEQ--LGVKDFSGLDIRVEHIPGGTCLV-REEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTA  152 (234)
Q Consensus        84 -~~~-------~~~l~~~--l~~~~~~~l~~~~~~~~~g~~i~-~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~  152 (234)
                       ...       .......  +.......+...+..+++|..+- .. ....+.+++|++|.+.+...   +    ....+
T Consensus       140 ~~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~PG~~~~~~h-~h~~ee~~~vl~G~~~~~~~---~----~~~~~  211 (250)
T d1sefa_         140 IHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIE-THVQEHGAYLISGQGMYNLD---N----EWYPV  211 (250)
T ss_dssp             GGGSCCEEGGGCTTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCB-CCSCCEEEEEEECEEEEEET---T----EEEEE
T ss_pred             cccccccccCCccccceEEecCccccccEEEEEEEECCCCccCccC-ccCceEEEEEeCCEEEEEEC---C----EEEEe
Confidence             000       0000000  00011112333458899998874 24 56778999999999998752   2    13467


Q ss_pred             CCCceEE
Q psy8820         153 FPGDMIG  159 (234)
Q Consensus       153 ~~g~~~G  159 (234)
                      ++||++=
T Consensus       212 ~~GD~i~  218 (250)
T d1sefa_         212 EKGDYIF  218 (250)
T ss_dssp             ETTCEEE
T ss_pred             cCCCEEE
Confidence            8999764

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.43  E-value=1  Score=28.58  Aligned_cols=65  Identities=12%  Similarity=0.123  Sum_probs=46.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEEEe
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIAWL  184 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~~i  184 (234)
                      ..+++|+.+-.- -.+.+.+++|++|.+.+...   | +   ...+.+||++=--   .+.  ...++|.+++.++.+
T Consensus        42 ~~~~~G~~~~~H-~h~~~~~~~vl~G~~~~~~~---~-~---~~~l~~Gd~~~ip---~~~--~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          42 FSLDKGQEIGRH-SSPGDAMVTILSGLAEITID---Q-E---TYRVAEGQTIVMP---AGI--PHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEECTTCEEEEE-CCSSEEEEEEEESEEEEEET---T-E---EEEEETTCEEEEC---TTS--CEEEEESSCEEEEEE
T ss_pred             EEECCCCCcceE-ECCCCEEEEEEeCEEEEEEc---c-E---EEEecCCEEEEcC---CCC--eEEeEECCCcEEEEE
Confidence            678999988776 66678999999999999763   2 2   2467899876432   133  456678888877654

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.18  E-value=0.49  Score=30.25  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=34.3

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i   65 (234)
                      +.+.+|+|++|++.+...   |+.   ..+.+||++=-   =.+.+  ..++|.+++.++.+
T Consensus        56 ~~~~~~~vl~G~~~~~~~---~~~---~~l~~Gd~~~i---p~~~~--H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          56 PGDAMVTILSGLAEITID---QET---YRVAEGQTIVM---PAGIP--HALYAVEAFQMLLV  106 (112)
T ss_dssp             SSEEEEEEEESEEEEEET---TEE---EEEETTCEEEE---CTTSC--EEEEESSCEEEEEE
T ss_pred             CCCEEEEEEeCEEEEEEc---cEE---EEecCCEEEEc---CCCCe--EEeEECCCcEEEEE
Confidence            367899999999987752   433   36899988621   12334  45567888877655

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=90.13  E-value=0.27  Score=30.26  Aligned_cols=31  Identities=35%  Similarity=0.608  Sum_probs=23.8

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      +.+.+..|++|++.+..  .+|...   .+++||.|
T Consensus        35 ~~~E~~~ileG~v~i~~--~~G~~~---~~~aGD~~   65 (88)
T d1o5ua_          35 DTNETCYILEGKVEVTT--EDGKKY---VIEKGDLV   65 (88)
T ss_dssp             SSCEEEEEEEEEEEEEE--TTCCEE---EEETTCEE
T ss_pred             CccEEEEEEEeEEEEEc--CCCCEE---EEeCCCEE
Confidence            45789999999998853  467543   49999987

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=89.05  E-value=0.46  Score=33.18  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      .++.+.+|++|+..+..-.++|++..-..+++||+|
T Consensus        62 ~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~   97 (174)
T d1fxza2          62 NANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL   97 (174)
T ss_dssp             TCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             CCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEE
Confidence            367899999999999988888877777789999998

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=88.98  E-value=4.1  Score=31.74  Aligned_cols=50  Identities=22%  Similarity=0.215  Sum_probs=34.5

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMI  158 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~  158 (234)
                      ..+++|.+.-.--....+.++++++|..++.....++  ....+.+++||++
T Consensus       255 ~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g--~~~t~~l~~GDv~  304 (372)
T d1j58a_         255 VTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDG--HARTFNYQAGDVG  304 (372)
T ss_dssp             EEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETT--EEEEEEEESSCEE
T ss_pred             EEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCC--ceEEEEecCCcEE
Confidence            5666666544331335678999999999987665554  4556778999965

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=88.70  E-value=0.47  Score=33.12  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEee
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVG   40 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fG   40 (234)
                      ++.+.+|++|+.++..-.++|++..-..+++||+|=
T Consensus        68 A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~  103 (173)
T d1od5a2          68 ANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLV  103 (173)
T ss_dssp             CCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEE
T ss_pred             CcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEE
Confidence            678999999999998888888777777899999983

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.39  E-value=0.6  Score=35.14  Aligned_cols=155  Identities=10%  Similarity=0.076  Sum_probs=80.9

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEeCccccccccCCC-chHHHH
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKLPEGLCDHLPRSP-SEQELI   83 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i~~~~f~~l~~~~-p~~~l~   83 (234)
                      .+.+++|++|++.+...   |+..   .+++||++=   +=.+.++......-+++.++.+.+ .+...-... |+... 
T Consensus        88 ~Ee~~yVl~G~~~l~~~---g~~~---~L~~Gd~~y---~P~g~~h~~~N~g~~~a~~l~i~k-~y~~~~g~~~p~~~v-  156 (273)
T d1sq4a_          88 AEAVLFVVEGELSLTLQ---GQVH---AMQPGGYAF---IPPGADYKVRNTTGQHTRFHWIRK-HYQKVDGVPLPEAFV-  156 (273)
T ss_dssp             EEEEEEEEESCEEEEES---SCEE---EECTTEEEE---ECTTCCEEEECCSSSCEEEEEEEE-ECCCCTTCCCCCCEE-
T ss_pred             cEEEEEEEeCEEEEEEC---CEEE---EecCCCEEE---ECCCCcEeeeecCCCCEEEEEEEe-ccccccccccccccc-
Confidence            46799999999988753   4433   589998752   124455555555566677777632 222211110 10000 


Q ss_pred             HHHHHHH--------HH---HhCC-CCCc---cccceeeeecCCCEEEE-ecCCCCceEEEEEeCeEEEEEecCCCCccE
Q psy8820          84 HSSKREF--------ME---QLGV-KDFS---GLDIRVEHIPGGTCLVR-EEVVEDNKLIYVIAGSLFITQKSSDGSNDV  147 (234)
Q Consensus        84 ~~~~~~l--------~~---~l~~-~~~~---~l~~~~~~~~~g~~i~~-~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~  147 (234)
                      ... ..+        ..   ..+. ...+   -+...+..+.+|..+-. . -...+.+++|++|...+...   +    
T Consensus       157 ~~~-~dv~p~~~~~~~~~~~~~r~~~p~d~~~d~~~~i~~~~PG~~~~~~h-~H~~ee~~~vl~G~~~~~~~---~----  227 (273)
T d1sq4a_         157 TNE-QDIQPLVMPDTEGRWSTTRFVDMSDMRHDMHVNIVNFEPGGVIPFAE-THVMEHGLYVLEGKAVYRLN---Q----  227 (273)
T ss_dssp             EEG-GGSCCEECSSGGGCEEEECSSCTTCTTCSEEEEEEEECSSSEESCCC-CCSEEEEEEEEECEEEEEET---T----
T ss_pred             cCh-hccCcccccCCCceeEEEEeeCCcccccceEEEEEEEccCCcccccc-ccccceEEEEEccEEEEEEC---C----
Confidence            000 000        00   0001 1111   12234488889987753 4 45567899999999988752   2    


Q ss_pred             EEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820         148 HLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA  182 (234)
Q Consensus       148 ~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~  182 (234)
                      ....+++||++=--+   +.+..+....-+++..+
T Consensus       228 ~~~~v~~GD~i~~~~---~~ph~~~n~g~~p~~yl  259 (273)
T d1sq4a_         228 DWVEVEAGDFMWLRA---FCPQACYSGGPGRFRYL  259 (273)
T ss_dssp             EEEEEETTCEEEEEE---SCCEEEECCSSSCEEEE
T ss_pred             EEEEecCCCEEEECC---CCCEEeEeCCCCCEEEE
Confidence            235678999763222   33433333334444444

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=88.24  E-value=0.98  Score=29.35  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEcceEEEEEEcC-CCcEEEEEeecCCcEeeeeccccCCCceeEEEE-ccceeEEEe
Q psy8820           3 DRSDSTYIVLTGRLRSVKTLE-SGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMA-VRDSELAKL   65 (234)
Q Consensus         3 d~~~~~yii~~G~v~v~~~~~-~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A-~~~~~l~~i   65 (234)
                      .+++.|+.|++|++.+..... +|+..   .+++||++=   +=.+.|+...... .+++.++.|
T Consensus        62 H~~eE~~yVl~G~~~~~~g~~~~~~~~---~l~~GDsi~---~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          62 HAGNEFLFVLEGEIHMKWGDKENPKEA---LLPTGASMF---VEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             CSSCEEEEEEESCEEEEESCTTSCEEE---EECTTCEEE---ECTTCCEEEEESTTSCCEEEEEE
T ss_pred             cccEEEEEEEEEEEEEEEecccCCEEE---EEccCcEEE---eCCCCCEEEEcCCCCccEEEEEE
Confidence            357889999999999887532 34333   599999863   2233455544332 334555554

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=85.20  E-value=1.5  Score=27.05  Aligned_cols=52  Identities=10%  Similarity=0.090  Sum_probs=33.8

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccccCCCceeEEEEccceeEEEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMVTSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll~~~~r~~tv~A~~~~~l~~i   65 (234)
                      ...+++|++|++.+...   ++   ...+++||++--   =.+.++.......+++.++.|
T Consensus        44 ~~E~~~Vl~G~~~~~~~---~~---~~~l~~GD~~~~---~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          44 VIEYIHVLEGIMKVFFD---EQ---WHELQQGEHIRF---FSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             CEEEEEEEESCEEEEET---TE---EEEECTTCEEEE---ECSSSEEEEESSSCEEEEEEE
T ss_pred             cEEEEEEEcCceEEEec---ce---EEEecCCCEEEE---CCCCeEEEEeCCccCEEEEEE
Confidence            46899999999998763   33   345999998742   235555555544455555554

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=84.18  E-value=2.9  Score=28.78  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+++|.+..---.-.++.+.+|++|..++..-..+| ++..-..+++||++-
T Consensus        47 ~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g-~~~~~~~l~~Gdv~v   98 (174)
T d1fxza2          47 GSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNG-ERVFDGELQEGRVLI   98 (174)
T ss_dssp             EEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred             eeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCC-ceeEEEEEcCCcEEE
Confidence            5678888777541356889999999999999877665 455566799999763

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.02  E-value=2.9  Score=27.08  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             CCCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEe
Q psy8820           4 RSDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLV   39 (234)
Q Consensus         4 ~~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~f   39 (234)
                      +.+.+++|++|++.+..   +|+.   ..+++||.+
T Consensus        71 ~~~E~~~vl~G~~~~~~---~g~~---~~l~~Gd~~  100 (128)
T d2pyta1          71 NYDEIDMVLEGELHVRH---EGET---MIAKAGDVM  100 (128)
T ss_dssp             SSEEEEEEEEEEEEEEE---TTEE---EEEETTCEE
T ss_pred             CccEEEEEEEeEEEEEE---CCEE---EEecCCCEE
Confidence            45789999999998875   3543   358999886

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=82.87  E-value=2  Score=29.58  Aligned_cols=49  Identities=20%  Similarity=0.339  Sum_probs=38.8

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+++|.++..- -..++.+++|++|..++.....++   ...+.+++||++-
T Consensus        49 ~~i~p~~~~~Ph-~~~a~ei~yV~~G~g~v~~v~~~~---~~~~~l~~GDv~~   97 (170)
T d1uija1          49 FQSKPNTILLPH-HADADFLLFVLSGRAILTLVNNDD---RDSYNLHPGDAQR   97 (170)
T ss_dssp             EEECTTEEEEEE-EESEEEEEEEEESCEEEEEECSSC---EEEEEECTTEEEE
T ss_pred             EEecCCcccccc-cCCCCEEEEEEEEEEEEEEEeCCC---cEEEEecCCcEEE
Confidence            578899888877 677899999999999998765543   4456789999874

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.75  E-value=2.2  Score=26.82  Aligned_cols=46  Identities=13%  Similarity=0.257  Sum_probs=32.3

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+++|+.+-.- -...+.+++|++|...+...+    ++.  ..+++||++-
T Consensus        31 ~~l~pG~~~p~H-~H~~~e~~~Vl~G~~~~~v~~----~e~--~~v~~Gd~i~   76 (108)
T d2b8ma1          31 IVLPRGEQMPKH-YSNSYVHLIIIKGEMTLTLED----QEP--HNYKEGNIVY   76 (108)
T ss_dssp             EEEETTCBCCCE-ECSSCEEEEEEESEEEEEETT----SCC--EEEETTCEEE
T ss_pred             EEECCCCcChhh-cccccEEEEEEeeeEEEEEec----ccE--EEeecceEee
Confidence            678888877655 445778899999999997633    121  2468888654

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=82.20  E-value=1.7  Score=26.85  Aligned_cols=51  Identities=16%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CCEEEEEEcceEEEEEEcCCCcEEEEEeecCCcEeeeeccc-cCCCceeEEEEccceeEEEe
Q psy8820           5 SDSTYIVLTGRLRSVKTLESGKRKEEAEYSKGDLVGLIEMV-TSTSRNTTVMAVRDSELAKL   65 (234)
Q Consensus         5 ~~~~yii~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~ll-~~~~r~~tv~A~~~~~l~~i   65 (234)
                      .+.+|+|++|++.+..   +|+.   ..+++||++    .+ .+.++.......+++.++.+
T Consensus        49 ~~e~~~vl~G~~~~~~---~~~~---~~l~~Gd~~----~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          49 SDKVYYALEGEVVVRV---GEEE---ALLAPGMAA----FAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             CEEEEEEEESCEEEEE---TTEE---EEECTTCEE----EECTTSCEEEECCSSSCEEEEEE
T ss_pred             CeEEEEEEeeEEEEEE---eeeE---EEecceEEE----EeCCCCEEEeEECCCCCEEEEEE
Confidence            3679999999998765   2433   358999976    23 34455444444455665544

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.99  E-value=8  Score=27.98  Aligned_cols=68  Identities=15%  Similarity=0.083  Sum_probs=41.9

Q ss_pred             eeeeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEEeeeeeeCcceEEEEEEcCCeEEE
Q psy8820         105 RVEHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIGGLAVLTGEASVFTIQSRLPATIA  182 (234)
Q Consensus       105 ~~~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G~~~~l~~~~~~~~v~A~~~~~~~  182 (234)
                      .+..+++|..+-...-...+.++++++|...+...   + +   ...+++||++=.-   .+.+..+...-.+++..+
T Consensus       168 ~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~i~---~-~---~~~v~~GD~i~~~---~~~~H~~~n~g~~~~~~l  235 (245)
T d1sfna_         168 STMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKLE---E-N---YYPVTAGDIIWMG---AHCPQWYGALGRNWSKYL  235 (245)
T ss_dssp             EEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEET---T-E---EEEEETTCEEEEC---TTCCEEEEEESSSCEEEE
T ss_pred             EEEEEccCceeeceecCCceEEEEEeCCEEEEEEC---C-E---EEEecCCCEEEEC---CCCCEeeEeCCCCCEEEE
Confidence            34788999876432145667888999999998753   2 2   2456899976432   244444444444555543

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=80.51  E-value=4.4  Score=27.83  Aligned_cols=52  Identities=17%  Similarity=0.107  Sum_probs=38.7

Q ss_pred             eeecCCCEEEEecCCCCceEEEEEeCeEEEEEecCCCCccEEEEEECCCceEE
Q psy8820         107 EHIPGGTCLVREEVVEDNKLIYVIAGSLFITQKSSDGSNDVHLFTAFPGDMIG  159 (234)
Q Consensus       107 ~~~~~g~~i~~~~g~~~~~~y~I~~G~v~v~~~~~~g~~~~~~~~~~~g~~~G  159 (234)
                      ..+.+|.+..---.-.++.+.+|++|..++..-..++ .+..-..+++||+|-
T Consensus        52 v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~-~~~~~~~l~~Gdv~~  103 (173)
T d1od5a2          52 VVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQG-NAVFDGELRRGQLLV  103 (173)
T ss_dssp             EEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTS-CEEEEEEEETTCEEE
T ss_pred             EEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCC-ceEEeEEecCCcEEE
Confidence            5778888776541346789999999999998776654 445556799999874