Psyllid ID: psy8838

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
MGMLRHRPHASNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHSIYVKDWGVDFSKNQ
cccccccccccccHHHHHHccccccccccEEHHcccccHHHHHHHcccccEEEEEccccccccHHHHHcccccEEEEEccccccHHHHHHHHHHHccccHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccEEEEEEEEcEEEEEccEEEEEccccccEEEEEEccccHHHHHHccccccccccccccHHHHHHHHHHHccccHHHHHEEEEEcHHHHHHHEcccccccccccccccccccEEccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEEEEEcccccccccc
mgmlrhrphasnvAVVSIKVGAEIIkseqltinfplgspvwaliadndstAIEEHFgqkfnsqrglmdgfsQCQLMAVSLCGHSLIMELVFLTISQSALgltvlknnpttsahhSMLLFSSMkcvgmdksyslpplaststsvvldnpvfnknvkidiplmpFYIEKIDKLNernnsiiedpvipsqapeKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKvkegerfsaEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHSIYVKdwgvdfsknq
mgmlrhrphasnvavVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLAStstsvvldnpvfnknvkidiplMPFYIEKIDKLNERNNSIiedpvipsqapekhAIVMIIRrrrkmkkhklkklrirmkfewakirqrremKKEKAFQLEmstkvkegerfSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWterkerhrnekqakesrkkalhsiyvkdwgvdfsknq
MGMLRHRPHASNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEKHAIVmiirrrrkmkkhklkklrirmkFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHSIYVKDWGVDFSKNQ
***********NVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVI*****EKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKI******************************YVENKLQLLHAEQLAESWKNVPESFIK**********************LHSIYVKDWGVD*****
*************************KSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHS*****SMKCVGMDKSYSLPPLASTSTSVVLDNPVFNK***************************************HAIVMIIRRRRKMKKHKLKKLRIRMKFEWAK****************MSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWT******************ALHSIYVKDWGVDFS***
**********SNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEKHAIVMIIRRR********KKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTE******************LHSIYVKDWGVDFSKNQ
*********ASNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERKERHRNEKQAKESRKKALHSIYVKDWGVDF****
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MGMLRHRPHASNVAVVSIKVGAEIIKSEQLTINFPLGSPVWALIADNDSTAIEEHFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNERNNSIIEDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFxxxxxxxxxxxxxxxxxxxxxKKALHSIYVKDWGVDFSKNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query319
289739557308 pyruvate dehydrogenase E1 beta subunit [ 0.633 0.655 0.359 5e-21
312379429 1821 hypothetical protein AND_08724 [Anophele 0.394 0.069 0.460 3e-13
357613829213 hypothetical protein KGM_12263 [Danaus p 0.288 0.431 0.468 6e-13
170042172248 conserved hypothetical protein [Culex qu 0.645 0.830 0.323 9e-13
94468528218 unknown [Aedes aegypti] 0.423 0.619 0.414 2e-12
58387862230 AGAP005843-PA [Anopheles gambiae str. PE 0.501 0.695 0.362 1e-11
91089759193 PREDICTED: similar to CG11876 CG11876-PB 0.363 0.601 0.487 1e-09
242247409211 uncharacterized protein LOC100164847 [Ac 0.410 0.620 0.405 2e-09
195445019 512 GK11887 [Drosophila willistoni] gi|19416 0.175 0.109 0.535 4e-09
194765039 509 GF23287 [Drosophila ananassae] gi|190614 0.369 0.231 0.478 3e-08
>gi|289739557|gb|ADD18526.1| pyruvate dehydrogenase E1 beta subunit [Glossina morsitans morsitans] Back     alignment and taxonomy information
 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 15/217 (6%)

Query: 69  GFSQCQLMAVSLCGHSLIMELVFLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMD 128
           GFS   + A ++ G   I+E +    S  A+    L+    ++     L     KC    
Sbjct: 98  GFSGVAIGA-AMAGLRPILEFMTFNFSMQAIDQASLRCCTLSTIRAIHLQTGRTKC---- 152

Query: 129 KSYSLPPLASTSTSVVLDNPVFNKNVKIDIPLMPFYIEKIDKLNE--RNNSIIEDPVIPS 186
            + + P  A    ++    P+   N K  I + PF    +D+LN+  ++ +    P + +
Sbjct: 153 NNVTTPVYAEYPRNI----PIGKLNNKPQI-VDPFITNCLDELNDMLKDGNQKHAPAL-N 206

Query: 187 QAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREMKKEKAFQLEMSTKVKEG 246
           +  +  A  MI+ RRRKMKKHKL+KLR +MKFEWAK+RQRREM+KEKAFQ  + T++KE 
Sbjct: 207 RKDKVEAARMIVIRRRKMKKHKLRKLRRKMKFEWAKVRQRREMRKEKAFQATLITQIKEA 266

Query: 247 ERFSAEQYVENKLQLLHAEQLAESWKN--VPESFIKE 281
           E F+A ++VE KLQ  +   L   WK   +P   IKE
Sbjct: 267 EVFNASKFVEEKLQKANETPLQRYWKGRRLPAFIIKE 303

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|312379429|gb|EFR25704.1| hypothetical protein AND_08724 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|357613829|gb|EHJ68740.1| hypothetical protein KGM_12263 [Danaus plexippus] Back     alignment and taxonomy information
>gi|170042172|ref|XP_001848810.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865678|gb|EDS29061.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|94468528|gb|ABF18113.1| unknown [Aedes aegypti] Back     alignment and taxonomy information
>gi|58387862|ref|XP_315868.2| AGAP005843-PA [Anopheles gambiae str. PEST] gi|55238658|gb|EAA11543.2| AGAP005843-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|91089759|ref|XP_966664.1| PREDICTED: similar to CG11876 CG11876-PB [Tribolium castaneum] gi|91090005|ref|XP_966665.1| PREDICTED: similar to CG11876 CG11876-PB [Tribolium castaneum] gi|270013614|gb|EFA10062.1| hypothetical protein TcasGA2_TC012236 [Tribolium castaneum] gi|270013689|gb|EFA10137.1| hypothetical protein TcasGA2_TC012323 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242247409|ref|NP_001156199.1| uncharacterized protein LOC100164847 [Acyrthosiphon pisum] gi|239788906|dbj|BAH71108.1| ACYPI005832 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195445019|ref|XP_002070135.1| GK11887 [Drosophila willistoni] gi|194166220|gb|EDW81121.1| GK11887 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|194765039|ref|XP_001964635.1| GF23287 [Drosophila ananassae] gi|190614907|gb|EDV30431.1| GF23287 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
pfam0821334 pfam08213, DUF1713, Mitochondrial domain of unknow 3e-06
>gnl|CDD|191968 pfam08213, DUF1713, Mitochondrial domain of unknown function (DUF1713) Back     alignment and domain information 
 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 192 HAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQ 225
            A  ++ +RRRKMKKHK KKLR R +    K+ +
Sbjct: 1   QADSVLRKRRRKMKKHKYKKLRKRTRALRRKLDK 34

This domain is found at the C terminal end of mitochondrial proteins of unknown function. Length = 34

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 319
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
KOG0524|consensus359 100.0
KOG0525|consensus362 99.97
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 99.91
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 99.9
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 99.89
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 99.88
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 99.86
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 99.86
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 99.83
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 99.79
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 99.7
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 99.57
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 99.57
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 99.52
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.52
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 99.51
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.49
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 99.41
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 99.36
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 99.28
PF0821334 DUF1713: Mitochondrial domain of unknown function 98.98
PRK05899624 transketolase; Reviewed 98.92
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 98.13
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 96.24
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 95.83
PRK12753663 transketolase; Reviewed 95.78
PRK12754663 transketolase; Reviewed 95.17
PTZ00089661 transketolase; Provisional 94.9
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 94.04
PLN02790654 transketolase 93.49
PRK09405891 aceE pyruvate dehydrogenase subunit E1; Reviewed 88.29
KOG0523|consensus632 84.59
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-49  Score=372.48  Aligned_cols=210  Identities=15%  Similarity=0.156  Sum_probs=192.5

Q ss_pred             cccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCc
Q psy8838          29 QLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLT  102 (319)
Q Consensus        29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr  102 (319)
                      ++|+.+|||+||+++|++|++|++ ||   .+||+|++|+||+++||++||+      ||||+|++|+|+|+||  .|||
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~------DTPiaE~gi~G~avGaA~~Glr   74 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVI------DTPIAESGIAGIAVGAALTGLR   74 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCcccee------cCccchhhhHHHHHHHHHcCCc
Confidence            478999999999999999999999 99   8999999999999999999999      9999999999999999  8999


Q ss_pred             ccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc--cccccc---
Q psy8838         103 VLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE---  173 (319)
Q Consensus       103 ~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E---  173 (319)
                           ||              +|+||.||+++++||++|+.    |||||+|++|+|||+|+|+++...  |||+.|   
T Consensus        75 -----Pi--------------vEiqf~dF~~~a~dqi~n~aAk~ryrsgG~~~~PiviR~p~G~g~~~~~~HSqs~ea~f  135 (324)
T COG0022          75 -----PI--------------VEIQFADFIYPAFDQIVNQAAKIRYRSGGQFTVPIVIRTPNGGGIGGGAQHSQSLEALF  135 (324)
T ss_pred             -----ce--------------EEEEecchhHHHHHHHHHHHHHHhhhcCCceeCCEEEEcCCCCCCCchhhccCCHHHHH
Confidence                 99              99999999999999999974    999999999999999999999887  888877   


Q ss_pred             cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHHh---hhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy8838         174 RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKLR---IRMKFEWAKIRQRREMKKEKAFQLEMSTK  242 (319)
Q Consensus       174 ~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKlr---kR~kF~~aKVrr~R~~kke~~Fq~~L~~~  242 (319)
                      .+.|   |+.|+++ |+++++++|++    ||++++|++|++.+....   ..-+++.|+++|+++|.+...|+..++.+
T Consensus       136 ~h~PGlKVV~PStpyDAKGLL~aAIrd~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~a  215 (324)
T COG0022         136 AHIPGLKVVMPSTPYDAKGLLKAAIRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTA  215 (324)
T ss_pred             hcCCCceEEecCChHHHHHHHHHHhcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHH
Confidence            8888   8999999 99999999999    999999999996436665   66788999999999999999999999999


Q ss_pred             HHhcccCChhhHHHHHHHHhc
Q psy8838         243 VKEGERFSAEQYVENKLQLLH  263 (319)
Q Consensus       243 lkeAeaf~ae~YV~~~l~~a~  263 (319)
                      +++||....+-+=.|.|+.-.
T Consensus       216 l~AAe~l~~~Gis~EVIDLRT  236 (324)
T COG0022         216 LEAAEELEKEGISAEVIDLRT  236 (324)
T ss_pred             HHHHHHHhhcCCCeEEEeccc
Confidence            999998766655444444433

>KOG0524|consensus Back     alignment and domain information
>KOG0525|consensus Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PF08213 DUF1713: Mitochondrial domain of unknown function (DUF1713); InterPro: IPR013177 This domain is found at the C-terminal end of mitochondrial proteins of unknown function Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>KOG0523|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query319
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 47/301 (15%), Positives = 89/301 (29%), Gaps = 93/301 (30%)

Query: 43  LIADN--DSTAIEEHFGQKFNSQ---------RGLMDGFSQCQLMAVSLCGHSL------ 85
           L+  N  ++ A        FN           + + D  S      +SL  HS+      
Sbjct: 248 LVLLNVQNAKAWN-----AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 86  IMELV--FLTISQSALGLTVLKNNPTTSAHHSMLLFSSMKCVGMD-----KSYSLPPLAS 138
           +  L+  +L      L   VL  NP      S+   +     G+      K  +   L +
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPR---RLSI--IAESIRDGLATWDNWKHVNCDKLTT 357

Query: 139 T-STSV-VLDNP----------VFNKNVKIDIPLM------PFYIEKIDKLNE-RNNSII 179
              +S+ VL+            VF  +  I   L+          + +  +N+    S++
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417

Query: 180 EDPVIPSQAPEKHAIVMIIRRRRKMKKHKLKKLRIRMKFEWAKIRQRREM--------KK 231
           E                   ++ K     +  + + +K    K+     +          
Sbjct: 418 E-------------------KQPKESTISIPSIYLELK---VKLENEYALHRSIVDHYNI 455

Query: 232 EKAFQLEMSTKVKEGERFSAEQYVENKL--QLLHAEQLAESWKNVPESFIK-EWTERKER 288
            K F  +             +QY  + +   L + E   E        F+   + E+K R
Sbjct: 456 PKTFDSDDLIPPYL------DQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIR 508

Query: 289 H 289
           H
Sbjct: 509 H 509

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 99.84
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 99.83
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 99.83
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 99.82
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 99.82
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 99.81
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 99.62
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 99.61
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 99.54
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 99.47
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 99.43
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 99.26
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 99.22
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 99.17
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 99.14
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 99.07
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 99.06
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 99.02
1gpu_A680 Transketolase; transferase(ketone residues); HET: 98.98
3l84_A632 Transketolase; TKT, structural genomics, center fo 98.97
3uk1_A711 Transketolase; structural genomics, seattle struct 98.96
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 98.91
2qtc_A886 Pyruvate dehydrogenase E1 component; thiamin dipho 97.65
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 97.28
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 95.85
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
Probab=99.84  E-value=2.9e-23  Score=194.15  Aligned_cols=226  Identities=13%  Similarity=0.127  Sum_probs=171.2

Q ss_pred             cccccHHHHHHHHHHHHHHhCCCeEE-eee---cCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cC
Q psy8838          27 SEQLTINFPLGSPVWALIADNDSTAI-EEH---FGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LG  100 (319)
Q Consensus        27 ~~~lt~~~Ai~~al~~~m~~d~~v~i-GE~---~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~G  100 (319)
                      +.++++.+|++++|.++|++||++++ |+.   +||+|+.+.+|.++||++|++      |++|+|++++|++.|+  .|
T Consensus        12 ~~~~~~~~a~~~~L~~l~~~~~~vv~~~~D~~~~g~~~~~~~~~~~~~gp~r~~------d~gIaE~~~v~~a~G~A~~G   85 (341)
T 2ozl_B           12 SLQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRII------DTPISEMGFAGIAVGAAMAG   85 (341)
T ss_dssp             CCEEEHHHHHHHHHHHHHHHCTTEEEEETTSSTTCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHHHHhhCCCEEEECCcccccCCcchhHHHHHHHhCCCcEE------ECchhHHHHHHHHHHHHHCC
Confidence            35689999999999999999999999 884   469999999999999999999      9999999999999999  89


Q ss_pred             CcccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc---cccccc
Q psy8838         101 LTVLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK---IDKLNE  173 (319)
Q Consensus       101 lr~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~---p~q~~E  173 (319)
                      ++     |+              ++++|.+|+..++||+.+..    ||+||..+.|+|++.|.| ...+.   |+|..|
T Consensus        86 ~r-----p~--------------~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~G-~~g~~G~tHs~~~e  145 (341)
T 2ozl_B           86 LR-----PI--------------CEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNG-ASAGVAAQHSQCFA  145 (341)
T ss_dssp             CE-----EE--------------EECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEEEECS-CCSSCCGGGCCCCH
T ss_pred             CE-----EE--------------EEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCc-CCCCCCcchhhHHH
Confidence            99     99              99999999999999998865    999999999999999974 44433   656545


Q ss_pred             ---cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhhhHHH----hh---hhHHHHHHHHHhhhHHHHHHH
Q psy8838         174 ---RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHKLKKL----RI---RMKFEWAKIRQRREMKKEKAF  235 (319)
Q Consensus       174 ---~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK~rKl----rk---R~kF~~aKVrr~R~~kke~~F  235 (319)
                         ..+|   |+.|.+. +...+...|.+    |+.+..|.+++++ ...    ..   .-+++.+.+.+++.+.....+
T Consensus       146 a~l~~iP~l~V~~Psd~~e~~~~l~~a~~~~~Pv~i~~~~~~~~~~-~~v~p~~~~~~~~~~~Gk~~v~~~g~dv~iia~  224 (341)
T 2ozl_B          146 AWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVP-FEFPPEAQSKDFLIPIGKAKIERQGTHITVVSH  224 (341)
T ss_dssp             HHHHTSTTCEEECCCSHHHHHHHHHHHHHSSSCEEEEECHHHHTCE-EECCHHHHSTTCCCCTTCCEEEECCSSEEEEEC
T ss_pred             HHhccCCCCEEEEeCCHHHHHHHHHHHHhcCCCEEEEEChhhhcCC-CCcCCccCCccccccCCceEEeccCCCEEEEEe
Confidence               4455   7888776 77777777776    5556666666553 211    11   113344444455667778888


Q ss_pred             HHHHHHHHHhcccCChhhHHHHHHHHhccccccccccCCcHHHHHHHHHHH
Q psy8838         236 QLEMSTKVKEGERFSAEQYVENKLQLLHAEQLAESWKNVPESFIKEWTERK  286 (319)
Q Consensus       236 q~~L~~~lkeAeaf~ae~YV~~~l~~a~~~~~p~~w~~lp~~~ik~~~~~~  286 (319)
                      +..+..++++|+.+..+-+      .+.--. +++++-+|++.|++.+.+.
T Consensus       225 Gs~~~~a~~Aa~~L~~~Gi------~v~vv~-~~~l~P~d~~~i~~~~~~~  268 (341)
T 2ozl_B          225 SRPVGHCLEAAAVLSKEGV------ECEVIN-MRTIRPMDMETIEASVMKT  268 (341)
T ss_dssp             STHHHHHHHHHHHHHTTTC------CEEEEE-CCEEETCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCC------CeEEEe-eeeecCCCHHHHHHHHhcC
Confidence            9999888888765432210      122222 4455558988888877664
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query319
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 99.95
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 96.64
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 96.57
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 96.41
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 95.41
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=8.7e-40  Score=288.53  Aligned_cols=155  Identities=13%  Similarity=0.103  Sum_probs=144.9

Q ss_pred             cccHHHHHHHHHHHHHHhCCCeEE-ee---ecCCccccccchhhhhCcCceeeecCCCCCCcchhHHHHHhhcc--cCCc
Q psy8838          29 QLTINFPLGSPVWALIADNDSTAI-EE---HFGQKFNSQRGLMDGFSQCQLMAVSLCGHSLIMELVFLTISQSA--LGLT  102 (319)
Q Consensus        29 ~lt~~~Ai~~al~~~m~~d~~v~i-GE---~~GgvF~~t~GL~~~FG~~RV~~~~~~~dTPIsE~~ivG~avGa--~Glr  102 (319)
                      +||+.+|||+||+++|++||+|++ ||   .+||+|++|+||.++||++||+      ||||||++|+|+|+|+  +|+|
T Consensus         2 ~~t~~~Ai~~al~~~m~~d~~v~i~GedV~~~GGvf~~t~GL~~~fG~~Rv~------dtPisE~~~~G~a~G~Al~G~r   75 (192)
T d1w85b1           2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVF------DTPLAESGIGGLAIGLALQGFR   75 (192)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEE------ECCSCHHHHHHHHHHHHHTTCE
T ss_pred             ceeHHHHHHHHHHHHHhhCCCEEEEecCCCccCcccccchhhHhhhhhheee------cccccccchHHHHHHHHhccCc
Confidence            689999999999999999999999 99   5899999999999999999999      9999999999999999  9999


Q ss_pred             ccCCCCcccccccccccccceeeEeccCCchhhhhHHHhhh----hccCCCCccceEEEccCCCccccc--cccccc---
Q psy8838         103 VLKNNPTTSAHHSMLLFSSMKCVGMDKSYSLPPLASTSTSV----VLDNPVFNKNVKIDIPLMPFYIEK--IDKLNE---  173 (319)
Q Consensus       103 ~~~~~PV~~~~~~~~~f~~~~~ei~~~df~~~aldqi~~~~----y~~~g~f~~PvvIr~P~GP~Iie~--p~q~~E---  173 (319)
                           ||              +|+||.||+++++||++|++    ||+||++++|+|||+|.|.+....  |+|+.|   
T Consensus        76 -----pI--------------ve~~~~dF~~~a~dqi~n~aak~~~~sgg~~~~P~viR~~~G~g~~~g~~HSqs~e~~f  136 (192)
T d1w85b1          76 -----PV--------------PEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLV  136 (192)
T ss_dssp             -----EE--------------EBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEEEEECSSSCCCTTSSCCCHHHH
T ss_pred             -----eE--------------EEEEeccchhHHHHHHHHHHhhcchhcCCccccceEEEeccccccCCccccccCHHHHh
Confidence                 99              99999999999999999874    999999999999999988776555  777766   


Q ss_pred             cCCC---cccCCCC-CCCcchhhhhH----HHHHhhhhhhhhh
Q psy8838         174 RNNS---IIEDPVI-PSQAPEKHAIV----MIIRRRRKMKKHK  208 (319)
Q Consensus       174 ~~lP---vv~pp~~-da~~~~~~a~~----Vl~IRRKKMkKHK  208 (319)
                      .++|   |+.|.++ |+++++++|++    ||++++|.+|+..
T Consensus       137 ~~~PGlkVv~Ps~p~Da~gll~~Ai~~~~Pvi~~E~k~ly~~~  179 (192)
T d1w85b1         137 AQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLYRSF  179 (192)
T ss_dssp             TTSTTCEEECCSSHHHHHHHHHHHHHSSSCEEEEEETTTSSSC
T ss_pred             hcCCCeeEEeeCCHHHHHHHHHHHHhCCCCEEEEEcHHHhhcC
Confidence            7888   8999998 99999999999    9999999999864
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure