Psyllid ID: psy8840

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MYKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
ccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEEEEEEccccccccccccccccEEEEccccccEEccccccccccHHHHHHHHHHcHHccHHHHHcccccccccEEEEEEEEEEEEEcccccccEEEEEcEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
ccEEcccccccccccccHcHHHHHHHHHHHHHcccEEEEEEEEEEEEEccEEEEcccccccccccEEEcccccEEEcccccEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHcEEEEEEEEEEEEcccccEEEcEEEEEEEEEEccccccccccccccccccccHHHccHHHHHHHHHHHHHHcccccccHHHcHHHHHcHHHcccccEEEEEEEEccEHHHHHHHHHHHHHHHHHHccEccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
MYKYMIigskesaeskgvipnsfDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDkdqskryelrenpdsgvyvKNLQSYICKNVKEIEQVMQNgnfnrtigatnmnehssrshAIFIITIEMsdvredssmsqvRVGKLNLVDlagserqsktgatgKRLKEASKINLSLSALGNVISALvdgknihvpyrdskLTRLLQdslggnsktlmianigpasynyeeSLTTLRYANrakniknqprvnedpKEALLREYQEEIQRLKNLLNqrtvqpssklndenqTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
MYKYMIIGSkesaeskgvipNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRyelrenpdsgvyvkNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLnlvdlagserqsktgatgkrlkEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYAnrakniknqprvnedpkEALLREYQEEIQRLKnllnqrtvqpssklndenqtreeylneeedklnnkrKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSmeskllqg
MYKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
*****************VIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLD**************SGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGAT********SHAIFIITIEM*******************************************INLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYA************************************************************************************************************************
MYKYMIIGSK**A**KGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQS****LRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMS************VGKLNLVDLAGSERQS*****GKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQR*********************************************************************************SMESKLLQG
MYKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSE***********LKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
MYKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAG**************KEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPKEALLREYQEEIQRLKNLLNQR****************E*LNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
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MYKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKNQPRVNEDPxxxxxxxxxxxxxxxxxxxxxxxxxPSSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
O15066 747 Kinesin-like protein KIF3 yes N/A 0.988 0.469 0.608 1e-127
Q61771 747 Kinesin-like protein KIF3 yes N/A 0.988 0.469 0.608 1e-126
P46871 742 Kinesin-II 95 kDa subunit yes N/A 0.988 0.473 0.600 1e-124
O55165 796 Kinesin-like protein KIF3 no N/A 0.985 0.439 0.5 1e-107
Q5R706 793 Kinesin-like protein KIF3 yes N/A 0.988 0.442 0.507 1e-107
O14782 793 Kinesin-like protein KIF3 no N/A 0.988 0.442 0.503 1e-106
O35066 796 Kinesin-like protein KIF3 no N/A 0.988 0.440 0.496 1e-106
Q4R628 702 Kinesin-like protein KIF3 N/A N/A 0.754 0.381 0.655 1e-104
Q5R4H3 702 Kinesin-like protein KIF3 no N/A 0.754 0.381 0.655 1e-104
Q9Y496 699 Kinesin-like protein KIF3 no N/A 0.754 0.383 0.655 1e-103
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 Back     alignment and function desciption
 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/375 (60%), Positives = 286/375 (76%), Gaps = 24/375 (6%)

Query: 4   YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
           Y + G +   E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQ+KR
Sbjct: 104 YTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 163

Query: 64  YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
            EL+E PD+GVYVK+L S++ K+VKEIE VM  GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 164 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 223

Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
           E S+V  D   + +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 224 ECSEVGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 282

Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
           VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+AN+GPASYN EE+LTTLRYANRAKNIKN
Sbjct: 283 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 342

Query: 244 QPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQT---------------- 287
           +PRVNEDPK+ALLRE+QEEI RLK  L +R++    +     +                 
Sbjct: 343 KPRVNEDPKDALLREFQEEIARLKAQLEKRSIGRRKRREKRREGGGSGGGGEEEEEEGEE 402

Query: 288 -------REEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEE 340
                  +++Y  E+++KL  +++ I+ ++ L   EK +LL+E E K + +  EK   E 
Sbjct: 403 GEEEGDDKDDYWREQQEKLEIEKRAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKDAAEM 462

Query: 341 LAKRINSMESKLLQG 355
           L  +I +MESKLL G
Sbjct: 463 LGAKIKAMESKLLVG 477
Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.
Homo sapiens (taxid: 9606)
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 Back     alignment and function description
>sp|P46871|KRP95_STRPU Kinesin-II 95 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP95 PE=1 SV=1 Back     alignment and function description
>sp|O55165|KIF3C_RAT Kinesin-like protein KIF3C OS=Rattus norvegicus GN=Kif3c PE=2 SV=1 Back     alignment and function description
>sp|Q5R706|KIF3C_PONAB Kinesin-like protein KIF3C OS=Pongo abelii GN=KIF3C PE=2 SV=1 Back     alignment and function description
>sp|O14782|KIF3C_HUMAN Kinesin-like protein KIF3C OS=Homo sapiens GN=KIF3C PE=1 SV=3 Back     alignment and function description
>sp|O35066|KIF3C_MOUSE Kinesin-like protein KIF3C OS=Mus musculus GN=Kif3c PE=2 SV=3 Back     alignment and function description
>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
61098208 739 kinesin-like protein KIF3B [Gallus gallu 0.988 0.474 0.633 1e-126
449274140 739 Kinesin-like protein KIF3B [Columba livi 0.988 0.474 0.633 1e-126
327285877 745 PREDICTED: kinesin-like protein KIF3B-li 0.988 0.471 0.618 1e-126
395830019 747 PREDICTED: kinesin-like protein KIF3B [O 0.988 0.469 0.610 1e-126
301765818 760 PREDICTED: kinesin-like protein KIF3B-li 0.988 0.461 0.609 1e-125
281339310 715 hypothetical protein PANDA_006765 [Ailur 0.988 0.490 0.609 1e-125
335308411 747 PREDICTED: kinesin-like protein KIF3B [S 0.988 0.469 0.608 1e-125
410954042 747 PREDICTED: kinesin-like protein KIF3B [F 0.988 0.469 0.608 1e-125
344279842 747 PREDICTED: kinesin-like protein KIF3B [L 0.988 0.469 0.608 1e-125
334311463 748 PREDICTED: LOW QUALITY PROTEIN: kinesin- 0.988 0.469 0.614 1e-125
>gi|61098208|ref|NP_001012852.1| kinesin-like protein KIF3B [Gallus gallus] gi|326932058|ref|XP_003212138.1| PREDICTED: kinesin-like protein KIF3B-like [Meleagris gallopavo] gi|60098561|emb|CAH65111.1| hypothetical protein RCJMB04_3m6 [Gallus gallus] Back     alignment and taxonomy information
 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/368 (63%), Positives = 292/368 (79%), Gaps = 17/368 (4%)

Query: 4   YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
           Y + G +   E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQSKR
Sbjct: 104 YTMEGVRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQSKR 163

Query: 64  YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
            EL+E PD+GVYVK+L S++ K+VKEIE VM  GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 164 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 223

Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
           E S++  D   + +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 224 ECSELGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 282

Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
           VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+ANIGPASYN EE+LTTLRYANRAKNIKN
Sbjct: 283 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANIGPASYNVEETLTTLRYANRAKNIKN 342

Query: 244 QPRVNEDPKEALLREYQEEIQRLKNLLNQRTV----------------QPSSKLNDENQT 287
           +PRVNEDPK+ALLRE+QEEI RLK  L +R++                + + +  DE   
Sbjct: 343 KPRVNEDPKDALLREFQEEIARLKAQLEKRSIGKRKRRERRREGGEEEEDTEEGEDEGDD 402

Query: 288 REEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINS 347
           +++Y  E+++KL  ++K I+ ++ L   EK +LL+E E K + +  EK+ TE L+ +I +
Sbjct: 403 KDDYWREQQEKLEIEKKAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKEATEMLSAKIKA 462

Query: 348 MESKLLQG 355
           MESKLL G
Sbjct: 463 MESKLLVG 470

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|449274140|gb|EMC83423.1| Kinesin-like protein KIF3B [Columba livia] Back     alignment and taxonomy information
>gi|327285877|ref|XP_003227658.1| PREDICTED: kinesin-like protein KIF3B-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|395830019|ref|XP_003788134.1| PREDICTED: kinesin-like protein KIF3B [Otolemur garnettii] Back     alignment and taxonomy information
>gi|301765818|ref|XP_002918347.1| PREDICTED: kinesin-like protein KIF3B-like [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|281339310|gb|EFB14894.1| hypothetical protein PANDA_006765 [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|335308411|ref|XP_003361221.1| PREDICTED: kinesin-like protein KIF3B [Sus scrofa] Back     alignment and taxonomy information
>gi|410954042|ref|XP_003983676.1| PREDICTED: kinesin-like protein KIF3B [Felis catus] Back     alignment and taxonomy information
>gi|344279842|ref|XP_003411695.1| PREDICTED: kinesin-like protein KIF3B [Loxodonta africana] Back     alignment and taxonomy information
>gi|334311463|ref|XP_003339623.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF3B-like [Monodelphis domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
UNIPROTKB|Q5F423 739 KIF3B "Uncharacterized protein 0.988 0.474 0.633 3.8e-117
UNIPROTKB|F1N020 743 KIF3B "Uncharacterized protein 0.971 0.464 0.608 3e-108
UNIPROTKB|P46871 742 KRP95 "Kinesin-II 95 kDa subun 0.943 0.451 0.628 1.7e-107
UNIPROTKB|E2QUS2 747 KIF3B "Uncharacterized protein 0.971 0.461 0.604 2.1e-107
UNIPROTKB|O15066 747 KIF3B "Kinesin-like protein KI 0.971 0.461 0.604 2.1e-107
UNIPROTKB|F1S519 757 KIF3B "Uncharacterized protein 0.971 0.455 0.604 2.1e-107
MGI|MGI:107688 747 Kif3b "kinesin family member 3 0.971 0.461 0.604 3.5e-107
ZFIN|ZDB-GENE-050119-3 775 kif3b "kinesin family member 3 0.977 0.447 0.591 1.4e-105
ZFIN|ZDB-GENE-080709-4 759 kif3cb "kinesin family member 0.971 0.454 0.547 2.5e-97
UNIPROTKB|F1NIP3 707 KIF3A "Uncharacterized protein 0.935 0.469 0.566 3.2e-97
UNIPROTKB|Q5F423 KIF3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 233/368 (63%), Positives = 292/368 (79%)

Query:     4 YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
             Y + G +   E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQSKR
Sbjct:   104 YTMEGVRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQSKR 163

Query:    64 YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
              EL+E PD+GVYVK+L S++ K+VKEIE VM  GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct:   164 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 223

Query:   124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
             E S++  D   + +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct:   224 ECSELGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 282

Query:   184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
             VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+ANIGPASYN EE+LTTLRYANRAKNIKN
Sbjct:   283 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANIGPASYNVEETLTTLRYANRAKNIKN 342

Query:   244 QPRVNEDPKEALLREYQEEIQRLKNLLNQRTV----------------QPSSKLNDENQT 287
             +PRVNEDPK+ALLRE+QEEI RLK  L +R++                + + +  DE   
Sbjct:   343 KPRVNEDPKDALLREFQEEIARLKAQLEKRSIGKRKRRERRREGGEEEEDTEEGEDEGDD 402

Query:   288 REEYLNEEEDKLNNKRKRIMNENHLSDAEKQKLLQEVESKQKAIEAEKKYTEELAKRINS 347
             +++Y  E+++KL  ++K I+ ++ L   EK +LL+E E K + +  EK+ TE L+ +I +
Sbjct:   403 KDDYWREQQEKLEIEKKAIVEDHSLVAEEKMRLLKEKEKKMEDLRREKEATEMLSAKIKA 462

Query:   348 MESKLLQG 355
             MESKLL G
Sbjct:   463 MESKLLVG 470
GO:0003777 "microtubule motor activity" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
GO:0016939 "kinesin II complex" evidence=IEA
GO:0017048 "Rho GTPase binding" evidence=IEA
GO:0090307 "spindle assembly involved in mitosis" evidence=IEA
UNIPROTKB|F1N020 KIF3B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P46871 KRP95 "Kinesin-II 95 kDa subunit" [Strongylocentrotus purpuratus (taxid:7668)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUS2 KIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O15066 KIF3B "Kinesin-like protein KIF3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S519 KIF3B "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:107688 Kif3b "kinesin family member 3B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050119-3 kif3b "kinesin family member 3B" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080709-4 kif3cb "kinesin family member 3Cb" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIP3 KIF3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q61771KIF3B_MOUSENo assigned EC number0.6080.98870.4698yesN/A
Q5R706KIF3C_PONABNo assigned EC number0.50710.98870.4426yesN/A
O15066KIF3B_HUMANNo assigned EC number0.6080.98870.4698yesN/A
P46871KRP95_STRPUNo assigned EC number0.60050.98870.4730yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
cd01371333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 1e-147
pfam00225326 pfam00225, Kinesin, Kinesin motor domain 1e-117
smart00129335 smart00129, KISc, Kinesin motor, catalytic domain 1e-116
cd00106328 cd00106, KISc, Kinesin motor domain 1e-106
cd01365356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 1e-96
cd01366329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 5e-96
cd01369325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 5e-96
cd01372341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 2e-94
cd01370338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 3e-90
cd01374321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 2e-85
cd01364352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 1e-84
cd01373337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 2e-77
cd01375334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 3e-69
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 3e-61
COG5059 568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 2e-59
cd01376319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 8e-57
cd01367322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 2e-56
cd01368345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 6e-54
cd01363186 cd01363, Motor_domain, Myosin and Kinesin motor do 3e-48
TIGR03319 514 TIGR03319, RNase_Y, ribonuclease Y 4e-05
COG4499434 COG4499, COG4499, Predicted membrane protein [Func 9e-05
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 2e-04
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information 
 Score =  417 bits (1075), Expect = e-147
 Identities = 168/234 (71%), Positives = 197/234 (84%), Gaps = 1/234 (0%)

Query: 8   GSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELR 67
           G +E  E +G+IPNSF  IF HIA+ EN Q+L+R SYLEIY EE+RDLL KDQ K+ EL+
Sbjct: 101 GVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160

Query: 68  ENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSD 127
           E PD GVYVK+L  ++ KN +E++++M  GN NR++GATNMNE SSRSH+IF ITIE S+
Sbjct: 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSE 220

Query: 128 VREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISALVDGK 187
             ED     +RVGKLNLVDLAGSERQSKTGATG RLKEA+KINLSLSALGNVISALVDGK
Sbjct: 221 KGEDGENH-IRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGK 279

Query: 188 NIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI 241
           + H+PYRDSKLTRLLQDSLGGNSKT+M ANIGPA YNY+E+L+TLRYANRAKNI
Sbjct: 280 STHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown] Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
KOG4280|consensus 574 100.0
KOG0245|consensus 1221 100.0
KOG0243|consensus 1041 100.0
KOG0240|consensus 607 100.0
PLN03188 1320 kinesin-12 family protein; Provisional 100.0
KOG0242|consensus 675 100.0
KOG0241|consensus 1714 100.0
cd01373337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 100.0
cd01370338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 100.0
cd01365356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 100.0
cd01368345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 100.0
cd01364352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 100.0
cd01371333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 100.0
cd01375334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 100.0
cd01369325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 100.0
cd01374321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 100.0
cd01372341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 100.0
cd01367322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 100.0
cd01376319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 100.0
cd01366329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 100.0
KOG0247|consensus 809 100.0
smart00129335 KISc Kinesin motor, catalytic domain. ATPase. Micr 100.0
PF00225335 Kinesin: Kinesin motor domain; InterPro: IPR001752 100.0
KOG0244|consensus 913 100.0
KOG0239|consensus670 100.0
cd00106328 KISc Kinesin motor domain. This catalytic (head) d 100.0
KOG0246|consensus676 100.0
COG5059 568 KIP1 Kinesin-like protein [Cytoskeleton] 100.0
cd01363186 Motor_domain Myosin and Kinesin motor domain. Thes 100.0
COG5059568 KIP1 Kinesin-like protein [Cytoskeleton] 93.17
PRK10884206 SH3 domain-containing protein; Provisional 88.36
COG2433 652 Uncharacterized conserved protein [Function unknow 87.93
KOG0971|consensus 1243 87.44
PF13851201 GAS: Growth-arrest specific micro-tubule binding 81.05
KOG0239|consensus 670 80.37
>KOG4280|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-82  Score=634.34  Aligned_cols=351  Identities=52%  Similarity=0.749  Sum_probs=297.3

Q ss_pred             eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCce
Q psy8840           2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQ   80 (355)
Q Consensus         2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~   80 (355)
                      |||||+|+  +++.+|||||+|.+||.+|+..+ ...|+|+|||+|||||.|+|||++.+++.+.++++|+.||||+||+
T Consensus        99 KTyTM~G~--~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nls  176 (574)
T KOG4280|consen   99 KTYTMIGP--DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLS  176 (574)
T ss_pred             CceEeeCC--ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcc
Confidence            89999999  38899999999999999999987 4579999999999999999999998778999999999999999999


Q ss_pred             EEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCccc
Q psy8840          81 SYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATG  160 (355)
Q Consensus        81 ~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g  160 (355)
                      ++.|.++++++.+|..|..+|++++|.||..|||||+||||+|++.....++. ...+.|+|+|||||||||+.++++.|
T Consensus       177 e~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~-~~~~~~rlnlvDLagsEr~~~tga~G  255 (574)
T KOG4280|consen  177 EMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGL-MSGRSSKLNLVDLAGSERQSKTGAEG  255 (574)
T ss_pred             eeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCc-cccccceeeeeeccchhhhcccCccc
Confidence            99999999999999999999999999999999999999999999844333333 56789999999999999999999999


Q ss_pred             cchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhcc
Q psy8840         161 KRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKN  240 (355)
Q Consensus       161 ~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~  240 (355)
                      +|++|+.+||+||++||+||.+|+++++.||||||||||+||||||||||+|+|||||+|+..+++||++||+||+|||.
T Consensus       256 ~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~  335 (574)
T KOG4280|consen  256 ERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKA  335 (574)
T ss_pred             hhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CccccccCCCchHHHHHHHHHHHHHHHHHHhhcccCCCCcccchhHhHHHHHHH-HHHHHHHHHHHHHhhccccHHHHHH
Q psy8840         241 IKNQPRVNEDPKEALLREYQEEIQRLKNLLNQRTVQPSSKLNDENQTREEYLNE-EEDKLNNKRKRIMNENHLSDAEKQK  319 (355)
Q Consensus       241 I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  319 (355)
                      |+|+|.+|++|+++.+++|++||+.||.+++.........-........+.+.. ....+....+..........++..+
T Consensus       336 I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~  415 (574)
T KOG4280|consen  336 IKNKPVINEDPKDALLRELQEEIERLKKELDPGGSPGGTDRQEAESGSEENLLKAETVISLDPNEARVADLALETEELEK  415 (574)
T ss_pred             hhccccccCCcchhhHHHHHHHHHHHHHhhccccCcCCCCccccccccccchhhccccccccchhhccccccccccchhh
Confidence            999999999999999999999999999999876543322111100000000111 1111111222222233344455556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy8840         320 LLQEVESKQKAIEAEKKYTEELAKRINSMESKLLQG  355 (355)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~g  355 (355)
                      ...+++.....++...++...+..+....+++.++|
T Consensus       416 ~~~e~~k~~~~~~~~~~~~~~l~~~~~~~~s~~~~~  451 (574)
T KOG4280|consen  416 RLLELQKKNQELEDLRQENEFLARKRPDIESKQLVG  451 (574)
T ss_pred             hHHHHHHHhhhhhhccccchhhhhcccchhhhceec
Confidence            666777777777888888899999988888887765

>KOG0245|consensus Back     alignment and domain information
>KOG0243|consensus Back     alignment and domain information
>KOG0240|consensus Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>KOG0242|consensus Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>KOG0247|consensus Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0244|consensus Back     alignment and domain information
>KOG0239|consensus Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>KOG0246|consensus Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0971|consensus Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0239|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3b6u_A372 Crystal Structure Of The Motor Domain Of Human Kine 1e-116
3b6v_A395 Crystal Structure Of The Motor Domain Of Human Kine 4e-98
2vvg_A350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 3e-75
1goj_A355 Structure Of A Fast Kinesin: Implications For Atpas 8e-65
3gbj_A354 Crystal Structure Of The Motor Domain Of Kinesin Ki 7e-59
4aqv_C373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 7e-56
1ii6_A368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 8e-56
4a1z_A368 Eg5-1 Length = 368 8e-56
3hqd_A369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 8e-56
1x88_A359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 9e-56
4ap0_A370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 9e-56
2y5w_A365 Crystal Structure Of Drosophila Melanogaster Kinesi 9e-56
1q0b_A367 Crystal Structure Of The Motor Protein Ksp In Compl 9e-56
4a28_A368 Eg5-2 Length = 368 9e-56
3zcw_A348 Eg5 - New Allosteric Binding Site Length = 348 2e-54
1ia0_K394 Kif1a Head-Microtubule Complex Structure In Atp-For 3e-54
1i5s_A367 Crystal Structure Of The Kif1a Motor Domain Complex 4e-54
1i6i_A366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-54
1vfv_A366 Crystal Structure Of The Kif1a Motor Domain Complex 5e-54
4atx_C340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 1e-52
1mkj_A349 Human Kinesin Motor Domain With Docked Neck Linker 1e-52
1bg2_A325 Human Ubiquitous Kinesin Motor Domain Length = 325 9e-51
2owm_A443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 1e-49
4a14_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 2e-49
2h58_A330 Crystal Structure Of The Kifc3 Motor Domain In Comp 2e-49
3lre_A355 Crystal Structure Analysis Of Human Kinesin-8 Motor 3e-49
1t5c_A349 Crystal Structure Of The Motor Domain Of Human Kine 6e-48
2xt3_A344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 3e-46
1sdm_A369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 4e-46
2wbe_C373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 6e-46
3h4s_A386 Structure Of The Complex Of A Mitotic Kinesin With 2e-45
3bfn_A388 Crystal Structure Of The Motor Domain Of Human Kine 4e-42
4h1g_A715 Structure Of Candida Albicans Kar3 Motor Domain Fus 4e-41
4gkr_A371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 7e-41
3nwn_A359 Crystal Structure Of The Human Kif9 Motor Domain In 5e-40
4etp_A403 C-Terminal Motor And Motor Homology Domain Of Kar3v 1e-37
2ncd_A420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 5e-37
3l1c_A383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 6e-37
3u06_A412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 6e-37
1cz7_A406 The Crystal Structure Of A Minus-End Directed Micro 7e-37
1f9t_A358 Crystal Structures Of Kinesin Mutants Reveal A Sign 9e-37
3kar_A346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 1e-36
1n6m_A409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 4e-36
1f9w_A347 Crystal Structures Of Mutants Reveal A Signalling P 5e-36
1f9u_A347 Crystal Structures Of Mutants Reveal A Signalling P 6e-36
1f9v_A347 Crystal Structures Of Mutants Reveal A Signalling P 7e-36
3t0q_A349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 2e-35
2rep_A376 Crystal Structure Of The Motor Domain Of Human Kine 4e-33
2gry_A420 Crystal Structure Of The Human Kif2 Motor Domain In 1e-29
1ry6_A360 Crystal Structure Of Internal Kinesin Motor Domain 1e-28
1v8j_A410 The Crystal Structure Of The Minimal Functional Dom 3e-27
3pxn_A344 Crystal Structure Of The Drosophila Kinesin Family 3e-27
2heh_A387 Crystal Structure Of The Kif2c Motor Domain (Casp T 7e-27
3edl_D331 Kinesin13-Microtubule Ring Complex Length = 331 8e-27
3dc4_A344 Crystal Structure Of The Drosophila Kinesin Family 9e-27
2kin_A238 Kinesin (Monomeric) From Rattus Norvegicus Length = 7e-22
3kin_B117 Kinesin (Dimeric) From Rattus Norvegicus Length = 1 3e-21
2kin_B100 Kinesin (Monomeric) From Rattus Norvegicus Length = 5e-21
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 195/257 (75%), Positives = 230/257 (89%), Gaps = 1/257 (0%)
Query: 4   YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
           Y + G +   E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQ+KR
Sbjct: 117 YTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176
Query: 64  YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
            EL+E PD+GVYVK+L S++ K+VKEIE VM  GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236
Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
           E S+V  D   + +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 237 ECSEVGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 295
Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
           VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+AN+GPASYN EE+LTTLRYANRAKNIKN
Sbjct: 296 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355
Query: 244 QPRVNEDPKEALLREYQ 260
           +PRVNEDPK+ALLRE+Q
Sbjct: 356 KPRVNEDPKDALLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To Maltose- Binding Protein Length = 715 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus Length = 117 Back     alignment and structure
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 1e-165
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 1e-155
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 1e-155
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 1e-155
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 1e-153
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 1e-153
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 1e-150
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 1e-145
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 1e-145
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 1e-145
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 1e-145
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 1e-144
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 1e-143
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 1e-142
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 1e-141
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 1e-139
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-138
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 1e-134
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 1e-134
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 1e-133
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-132
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 1e-128
3u06_A412 Protein claret segregational; motor domain, stalk 1e-128
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 1e-127
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 1e-127
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 1e-127
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 2e-58
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 5e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
 Score =  464 bits (1196), Expect = e-165
 Identities = 195/257 (75%), Positives = 229/257 (89%), Gaps = 1/257 (0%)

Query: 4   YMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKR 63
           Y + G +   E +GVIPNSFD IF+HI+R++N+QYL+RASYLEIYQEEIRDLL KDQ+KR
Sbjct: 117 YTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176

Query: 64  YELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITI 123
            EL+E PD+GVYVK+L S++ K+VKEIE VM  GN NR++GATNMNEHSSRSHAIF+ITI
Sbjct: 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI 236

Query: 124 EMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVISAL 183
           E S+V  D     +RVGKLNLVDLAGSERQ+KTGA G+RLKEA+KINLSLSALGNVISAL
Sbjct: 237 ECSEVGLDGENH-IRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISAL 295

Query: 184 VDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNIKN 243
           VDGK+ H+PYRDSKLTRLLQDSLGGN+KT+M+AN+GPASYN EE+LTTLRYANRAKNIKN
Sbjct: 296 VDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKN 355

Query: 244 QPRVNEDPKEALLREYQ 260
           +PRVNEDPK+ALLRE+Q
Sbjct: 356 KPRVNEDPKDALLREFQ 372
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Length = 100 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Length = 117 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
3b6u_A372 Kinesin-like protein KIF3B; structural genomics co 100.0
2y65_A365 Kinesin, kinesin heavy chain; motor protein; HET: 100.0
3cob_A369 Kinesin heavy chain-like protein; motor, switch II 100.0
2vvg_A350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
3bfn_A388 Kinesin-like protein KIF22; limited proteolysis, s 100.0
2owm_A443 Nckin3-434, related to kinesin-like protein KIF1C; 100.0
1t5c_A349 CENP-E protein, centromeric protein E; kinesin mot 100.0
1goj_A355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
2zfi_A366 Kinesin-like protein KIF1A, kinesin heavy chain is 100.0
1x88_A359 Kinesin-like protein KIF11; switch II, motor domai 100.0
2wbe_C373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 100.0
1bg2_A325 Kinesin; motor protein, ATPase, microtubule associ 100.0
3lre_A355 Kinesin-like protein KIF18A; motor protein, nucleo 100.0
3gbj_A354 KIF13B protein; kinesin, motor domain, ADP, struct 100.0
2h58_A330 Kinesin-like protein KIFC3 variant; motor domain, 100.0
2nr8_A358 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
4a14_A344 Kinesin, kinesin-like protein KIF7; motor protein, 100.0
3nwn_A359 Kinesin-like protein KIF9; motor domain, ADP, stru 100.0
1f9v_A347 Kinesin-like protein KAR3; kinesin-related protein 100.0
2rep_A376 Kinesin-like protein KIFC1; structural genomics co 100.0
1ry6_A360 Internal kinesin; kinesin motor domain, nucleotide 100.0
3t0q_A349 AGR253WP; kinesin, alpha and beta proteins, P-loop 100.0
4etp_A403 Kinesin-like protein KAR3; kinesin motor protein, 100.0
2heh_A387 KIF2C protein; kinesin, motor domain, ADP, structu 100.0
1v8k_A410 Kinesin-like protein KIF2C; microtubule destabiliz 100.0
3u06_A412 Protein claret segregational; motor domain, stalk 100.0
3dc4_A344 Kinesin-like protein NOD; catalytic domain, ATPase 100.0
4h1g_A715 Maltose binding protein-cakar3 motor domain fusio; 100.0
2kin_B100 Kinesin; motor protein, cytoskeleton; HET: ADP; 2. 100.0
3kin_B117 Kinesin heavy chain; motor protein, cytoskeleton; 99.97
2o0a_A298 S.cerevisiae chromosome XVI reading frame ORF YPL2 98.77
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 89.18
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 88.53
3bas_A89 Myosin heavy chain, striated muscle/general contro 86.94
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 83.39
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 80.81
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
Probab=100.00  E-value=7.1e-77  Score=579.22  Aligned_cols=258  Identities=76%  Similarity=1.130  Sum_probs=221.6

Q ss_pred             eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcCCceEEEEEEEEEEEcchhccccCCcccccccceecCCCCeEEcCceE
Q psy8840           2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTENKQYLIRASYLEIYQEEIRDLLDKDQSKRYELRENPDSGVYVKNLQS   81 (355)
Q Consensus         2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~~l~i~e~~~~~~~v~~l~~   81 (355)
                      |||||+|...+++.+|||||++++||..+...++..|.|+|||+|||||+|+|||++....++.++++++++++|.||++
T Consensus       115 KTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~~v~v~gl~~  194 (372)
T 3b6u_A          115 KTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSS  194 (372)
T ss_dssp             HHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTTEEEETTCCC
T ss_pred             CCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCCcEecCCCEE
Confidence            89999999888888999999999999999988889999999999999999999999877788999999999999999999


Q ss_pred             EEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCcccc
Q psy8840          82 YICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGK  161 (355)
Q Consensus        82 ~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~~g~  161 (355)
                      +.|.|++|++.+|..|.++|++++|.||..|||||+||+|+|++.....++. ..+..|+|+|||||||||..++++.|.
T Consensus       195 ~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~-~~~~~skL~lVDLAGSEr~~~t~~~g~  273 (372)
T 3b6u_A          195 FVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE-NHIRVGKLNLVDLAGSERQAKTGAQGE  273 (372)
T ss_dssp             EECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----C-CCEEEEEEEEEECCCCCE---------
T ss_pred             EEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCC-cceEEEEEEEEECCCCccccccCcchh
Confidence            9999999999999999999999999999999999999999999876543333 457889999999999999999999999


Q ss_pred             chHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHhccC
Q psy8840         162 RLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRAKNI  241 (355)
Q Consensus       162 ~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~rak~I  241 (355)
                      +++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||++|
T Consensus       274 rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I  353 (372)
T 3b6u_A          274 RLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNI  353 (372)
T ss_dssp             -EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTC
T ss_pred             hhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999988789999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCchHHHHHHHH
Q psy8840         242 KNQPRVNEDPKEALLREYQ  260 (355)
Q Consensus       242 ~n~~~~n~~~~~~~~~~l~  260 (355)
                      +|+|.+|+++.++++++|+
T Consensus       354 ~n~~~~n~~~~~~~~~~~~  372 (372)
T 3b6u_A          354 KNKPRVNEDPKDALLREFQ  372 (372)
T ss_dssp             BCCCCCCC-----------
T ss_pred             cccceecCChHHHHHHhcC
Confidence            9999999999999988875
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9 Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d2zfia1349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 9e-71
d1goja_354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 1e-68
d1x88a1345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 1e-65
d1bg2a_323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 2e-65
d1f9va_342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 1e-64
d1ry6a_330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 5e-60
d1sdma_364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 1e-57
d1v8ka_362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 5e-56
d2ncda_368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-51
d1uzea_ 579 d.92.1.5 (A:) Angiotensin converting enzyme, ACE { 6e-04
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score =  222 bits (566), Expect = 9e-71
 Identities = 111/249 (44%), Positives = 157/249 (63%), Gaps = 14/249 (5%)

Query: 4   YMIIGSKESAESKGVIPNSFDQIFSHIART--ENKQYLIRASYLEIYQEEIRDLLDKDQS 61
           Y ++G +E  + +G+IP   + +FS I  T  +N  Y +  SY+EIY E +RDLL+    
Sbjct: 102 YTMMGKQEKDQ-QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK 160

Query: 62  KRYELRENPDSGVYVKNLQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFII 121
               +RE+P  G YV++L      +  +I+ +M +GN  RT+ ATNMNE SSRSHA+F I
Sbjct: 161 GNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNI 220

Query: 122 TIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGATGKRLKEASKINLSLSALGNVIS 181
                    +++++  +V K++LVDLAGSER   TGA G RLKE + IN SL+ LG VIS
Sbjct: 221 IFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVIS 280

Query: 182 ALVDG-----------KNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLT 230
           AL +            K   +PYRDS LT LL+++LGGNS+T M+A + PA  NY+E+L+
Sbjct: 281 ALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLS 340

Query: 231 TLRYANRAK 239
           TLRYA+RAK
Sbjct: 341 TLRYADRAK 349
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure
>d1uzea_ d.92.1.5 (A:) Angiotensin converting enzyme, ACE {Human (Homo sapiens) [TaxId: 9606]} Length = 579 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1sdma_364 Kinesin heavy chain-like protein {Potato (Solanum 100.0
d1goja_354 Kinesin {Neurospora crassa [TaxId: 5141]} 100.0
d2zfia1349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 100.0
d1x88a1345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 100.0
d1bg2a_323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1v8ka_362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 100.0
d1ry6a_330 Kinesin {Malaria parasite (Plasmodium falciparum) 100.0
d1f9va_342 Kinesin motor Ncd (non-claret disjunctional) {Bake 100.0
d2ncda_368 Kinesin motor Ncd (non-claret disjunctional) {Frui 100.0
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=100.00  E-value=2.3e-67  Score=511.99  Aligned_cols=260  Identities=38%  Similarity=0.609  Sum_probs=226.5

Q ss_pred             eEEeecCCCCCCCCCCchHHHHHHHHHHhhhcC-CceEEEEEEEEEEEcchhccccCCccc--ccccceecCCCCeEEcC
Q psy8840           2 YKYMIIGSKESAESKGVIPNSFDQIFSHIARTE-NKQYLIRASYLEIYQEEIRDLLDKDQS--KRYELRENPDSGVYVKN   78 (355)
Q Consensus         2 KTyTm~G~~~~~~~~GIipra~~~lF~~i~~~~-~~~~~v~vS~~EIyne~v~DLL~~~~~--~~l~i~e~~~~~~~v~~   78 (355)
                      |||||+|+..++   |||||++++||..+...+ ...|.|++||+|||||+|+|||.|...  .++.+++++.++++|.|
T Consensus        88 KTyTm~G~~~~~---Giipr~~~~lf~~i~~~~~~~~~~v~~S~~EIyne~i~DLL~~~~~~~~~l~~~~~~~~~~~v~~  164 (364)
T d1sdma_          88 KTFTIYGADSNP---GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVEN  164 (364)
T ss_dssp             HHHHHTBCSSSB---CHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEESSSCEEETTSCTTSCCCCCEEEECTTSCEEEET
T ss_pred             cccccccCcccc---chhHHHHHHHHhhhhhccccccceEEEEEEEEeccccccccCcccccccccceeecccCcccccc
Confidence            899999987665   999999999999998765 678999999999999999999987533  45788999999999999


Q ss_pred             ceEEEecCHHHHHHHHhcCcccccccccCCCCCCCCceeEEEEEEEEeeccCCCCCceEEEEEEEeecCCCCccccCCCc
Q psy8840          79 LQSYICKNVKEIEQVMQNGNFNRTIGATNMNEHSSRSHAIFIITIEMSDVREDSSMSQVRVGKLNLVDLAGSERQSKTGA  158 (355)
Q Consensus        79 l~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~if~i~v~~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~t~~  158 (355)
                      ++++.|.|++|++.++..|..+|.+++|.+|..|||||+||+|++++.....    .....|+|+|||||||||..++++
T Consensus       165 l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRsH~i~~i~v~~~~~~~----~~~~~~kl~~vDLAGsEr~~~~~~  240 (364)
T d1sdma_         165 VTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQT----QAIARGKLSFVDLAGSERVKKSGS  240 (364)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHHHCCCSSCTTCHHHHSEEEEEEEEEEEETTT----CCEEEEEEEEEECCCCSCCCC---
T ss_pred             ceeeeeCCHHHHHHHhhccceeeccccccccccccccceEEEEEEEEeccCc----ceeeeEEEEeechhhccccccccc
Confidence            9999999999999999999999999999999999999999999998876542    346889999999999999999999


Q ss_pred             cccchHHHHhhhhhhHHHHHHHHHHhCCCCCcccCCCCcccccccccCCCCceEEEEEecCCCCCCHHHHHHHHHHHHHh
Q psy8840         159 TGKRLKEASKINLSLSALGNVISALVDGKNIHVPYRDSKLTRLLQDSLGGNSKTLMIANIGPASYNYEESLTTLRYANRA  238 (355)
Q Consensus       159 ~g~~~~E~~~IN~SL~~L~~vI~aL~~~~~~~iPyRdSkLT~lL~dsLgGnskt~mI~~vsp~~~~~~eTlsTL~fa~ra  238 (355)
                      .|.+++|+..||+||++|++||.+|+++.. ||||||||||+||+|+|||||+|+|||||||+..+++||++||+||++|
T Consensus       241 ~g~~~~E~~~iN~SL~~L~~vi~aL~~~~~-~ipyR~SkLT~lL~d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~a  319 (364)
T d1sdma_         241 AGNQLKEAQSINKSLSALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRV  319 (364)
T ss_dssp             ------CCCTTCHHHHHHHHHHHHHHHTCS-CCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHH
T ss_pred             cCceeeeccccccchhhHHHHHHHHHcCCC-cCCchhhhhhHHHHhhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999998655 9999999999999999999999999999999999999999999999999


Q ss_pred             ccCccccccCCCchHHHHHHHHHHHHHHHHHHh
Q psy8840         239 KNIKNQPRVNEDPKEALLREYQEEIQRLKNLLN  271 (355)
Q Consensus       239 k~I~n~~~~n~~~~~~~~~~l~~ei~~Lk~~l~  271 (355)
                      ++|+|+|.+|..+.  .+.+|++++..|+.++.
T Consensus       320 k~i~n~p~~n~~~~--~~~~l~~~i~~l~~~~~  350 (364)
T d1sdma_         320 RSIVNDPSKNVSSK--EVARLKKLVSYWKEQAG  350 (364)
T ss_dssp             TTCCCCCCCCEECH--HHHHHHTTTTCC-----
T ss_pred             hhcccCCcccCCHH--HHHHHHHHHHHHHHHHH
Confidence            99999999998764  35667777777776654
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure