Psyllid ID: psy8848

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46
MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK
cHHHHHccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEcccccEEEEEcccEEEEEEEEEccEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEEEEEEEcccccccEEccEEEEEEEEEEEEcccEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccccccccccccccccccEEEEccEEHHHHHcHHHHHHcccccccccccccccccccccccccccHHHHHHHcccEEEEEEccccccccccccEEEEEEEEEEEccEEccccccEEEEccHHHHHHHcHHHccccccccccEEcEEEEccEEEEcc
cccccccHHHHHHcHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEcccEEEEEEcccccEEEEEEEcccccccEcccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccEEcccccEEEccccEEEEEccccccccccccccEEEEEEEEcccccccccccEEccccHHHHccHHHHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccccEEEccccccHHcccccccccccccccccHHHHccEEEEEEEccHHHHHccccccccccccEEEEEEcccccccccHHHHHHHHcccEEEEEHcccccccEcccccccccEEEEEccEEEccHHHEEEcccHHHHHHHcEEEcccccccccccccEEEEccEEEccc
MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKigashssiefnegngfsVFVRKGKIDVieqnndknMNVIIYIQDgkkmfygnsstsdfckKSLYDTINAAYNIARftasdnfaglpdentlemnpldfklytpwflsidDAKLIAYRCENEAFNFNSLivnnentgvttqQSHFLLanshgfmsgypfskhiisispiaikgkemqrdnwyssnsdpkkldqpeiiGFYAAKRTISRLKAkkistrkcpvlfeaPLAFELLNIFARLIsgnslyrksTFLVDSLGKKIFSSHIQiiedphilgsfgsssfdnegvktQKRLVVKNGIIQGYFLSTYSAKKlgmkttgnsggahHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDginyitgdyskgafgywiengkiqysVEEITISGKLQNMFKQIVAIGSdvltrnsntsgsILIENMIIAGK
MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDvieqnndknmNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYssnsdpkkldqpeIIGFYAAKRTISRlkakkistrkcpVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGsdvltrnsntsgsilienmiiagk
MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK
**********FIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGK********************EIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISN**********MLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMII***
*****************FQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAI**K******WYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSG********************MLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAG*
MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK
*******RSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGK*********SDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIA**
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MEQLIKNRSKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query459 2.2.26 [Sep-21-2011]
P0AFK0450 Protein PmbA OS=Escherich N/A N/A 0.904 0.922 0.399 4e-92
P0AFK1450 Protein PmbA OS=Escherich N/A N/A 0.904 0.922 0.399 4e-92
P45077451 Protein PmbA homolog OS=H yes N/A 0.949 0.966 0.380 4e-85
Q89AY6448 Protein PmbA homolog OS=B yes N/A 0.934 0.957 0.379 2e-80
Q8KA30447 Protein PmbA homolog OS=B yes N/A 0.921 0.946 0.390 8e-77
P57191446 Protein PmbA homolog OS=B yes N/A 0.847 0.872 0.387 3e-76
Q58403451 Uncharacterized protein M yes N/A 0.437 0.445 0.267 2e-13
P73754463 Uncharacterized protein s N/A N/A 0.830 0.822 0.240 1e-12
O26944454 Uncharacterized protein M no N/A 0.453 0.458 0.263 1e-12
O29602425 Uncharacterized protein A yes N/A 0.372 0.402 0.277 1e-11
>sp|P0AFK0|PMBA_ECOLI Protein PmbA OS=Escherichia coli (strain K12) GN=pmbA PE=1 SV=1 Back     alignment and function desciption
 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 169/423 (39%), Positives = 266/423 (62%), Gaps = 8/423 (1%)

Query: 37  SSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLYD 96
           + +  ++  G SV  R G+++ +E N+D  + + +Y Q+ K    G++S++D   +++  
Sbjct: 36  AEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQNRK----GSASSTDLSPQAIAR 91

Query: 97  TINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNF 156
           T+ AA +IAR+T+ D  AG+ D+  L  +  D  L+ P  +S D+A  +A R E  A   
Sbjct: 92  TVQAALDIARYTSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQA 151

Query: 157 NSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNS 216
           +  I N E     +     +  NSHG + GY  ++H +S   IA +  +M+RD  Y+   
Sbjct: 152 DKRITNTEGGSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGR 211

Query: 217 DPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEAPLAFELLNIFARLISGNSLYR 276
               L  PE +G   A+RT+SRL  +K+ST K PV+F   +A  L       I+G S+YR
Sbjct: 212 AMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYR 271

Query: 277 KSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGYFLST 336
           KSTFL+DSLGK+I    + I E PH+L    S+ FD+EGV+T++R ++K+GI+  + L++
Sbjct: 272 KSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTS 331

Query: 337 YSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGD 396
           YSA+KLG+K+TG++GG H+  I         + ++MLK+M TGL+VTELMG G++ ITGD
Sbjct: 332 YSARKLGLKSTGHAGGIHNWRIAGQGL----SFEQMLKEMGTGLVVTELMGQGVSAITGD 387

Query: 397 YSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMII 456
           YS+GA G+W+ENG+IQY V EITI+G L++M++ IV +G+D+ TR++   GS+L+  M I
Sbjct: 388 YSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKI 447

Query: 457 AGK 459
           AG+
Sbjct: 448 AGQ 450
May facilitate the secretion of the peptide antibiotic microcin B17 (MccB17) by completing its maturation. Suppresses the inhibitory activity of the carbon storage regulator (CsrA).
Escherichia coli (strain K12) (taxid: 83333)
>sp|P0AFK1|PMBA_ECO57 Protein PmbA OS=Escherichia coli O157:H7 GN=pmbA PE=3 SV=1 Back     alignment and function description
>sp|P45077|PMBA_HAEIN Protein PmbA homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pmbA PE=3 SV=1 Back     alignment and function description
>sp|Q89AY6|PMBA_BUCBP Protein PmbA homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=pmbA PE=3 SV=1 Back     alignment and function description
>sp|Q8KA30|PMBA_BUCAP Protein PmbA homolog OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=pmbA PE=3 SV=1 Back     alignment and function description
>sp|P57191|PMBA_BUCAI Protein PmbA homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=pmbA PE=3 SV=1 Back     alignment and function description
>sp|Q58403|Y996_METJA Uncharacterized protein MJ0996 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0996 PE=3 SV=2 Back     alignment and function description
>sp|P73754|Y863_SYNY3 Uncharacterized protein slr0863 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0863 PE=3 SV=1 Back     alignment and function description
>sp|O26944|Y856_METTH Uncharacterized protein MTH_856 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_856 PE=3 SV=1 Back     alignment and function description
>sp|O29602|Y655_ARCFU Uncharacterized protein AF_0655 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0655 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query459
340788138454 PmbA protein [Collimonas fungivorans Ter 0.980 0.991 0.617 1e-174
300311183454 Zn-dependent protease [Herbaspirillum se 0.980 0.991 0.593 1e-169
409405681454 Zn-dependent protease [Herbaspirillum sp 0.980 0.991 0.588 1e-168
134094233454 hypothetical protein HEAR0999 [Herminiim 0.980 0.991 0.591 1e-167
399019701454 putative Zn-dependent protease-like prot 0.976 0.986 0.591 1e-166
152980976454 PmbA protein [Janthinobacterium sp. Mars 0.984 0.995 0.588 1e-166
398837370454 putative Zn-dependent protease-like prot 0.980 0.991 0.575 1e-163
427400567450 hypothetical protein HMPREF9710_01401 [M 0.976 0.995 0.568 1e-161
395764031450 Zn-dependent protease [Janthinobacterium 0.976 0.995 0.561 1e-155
445499345450 TldD/PmbA DNA gyrase modulator [Janthino 0.971 0.991 0.56 1e-154
>gi|340788138|ref|YP_004753603.1| PmbA protein [Collimonas fungivorans Ter331] gi|340553405|gb|AEK62780.1| PmbA protein [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 278/450 (61%), Positives = 355/450 (78%)

Query: 9   SKFIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMN 68
           S FI+S+ + QQLAQD+L YA++ GAS +++E +EG+G SV VRKG ++ IEQN DK M 
Sbjct: 4   SVFIHSQEQLQQLAQDVLRYAREKGASGAAVEISEGSGLSVGVRKGSVETIEQNKDKGMG 63

Query: 69  VIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLD 128
           V +Y+ + +    GN+STSDF  K+L DT+ AAYNIARFTA D+ AGLPD +TLEMNPLD
Sbjct: 64  VTVYLGEERHTRRGNASTSDFSAKALQDTVEAAYNIARFTAEDDCAGLPDVDTLEMNPLD 123

Query: 129 FKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYP 188
            KL +PW +S ++A  +A RCE  AF  +  I N+E  GV  QQSHF+ ANS GFM GYP
Sbjct: 124 LKLCSPWLISAEEAVELAKRCEAAAFAVDKRITNSEGAGVYAQQSHFVSANSRGFMGGYP 183

Query: 189 FSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRK 248
           FS+H IS++PIA KG  MQRD+WYSS  D K+L +PE IG YAA R ++RL A+++ TRK
Sbjct: 184 FSRHTISVAPIAGKGGNMQRDDWYSSMRDAKQLAKPEAIGRYAAGRALARLNARQLDTRK 243

Query: 249 CPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGS 308
           CPVLFEAPLA  LL  F + +SG +LYRKSTFL+D+LGK +F+ HIQI+EDPH++G+ GS
Sbjct: 244 CPVLFEAPLAAGLLGAFVQAVSGGALYRKSTFLLDTLGKSVFAPHIQIVEDPHVIGAVGS 303

Query: 309 SSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDN 368
           + FD EGVKTQ+R VVK+G++QGYFLSTYSA+KLGMKTTGNSGG+H+L I S+ TKSSDN
Sbjct: 304 APFDEEGVKTQRRDVVKDGVVQGYFLSTYSARKLGMKTTGNSGGSHNLSITSSLTKSSDN 363

Query: 369 LKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMF 428
            K MLKK++TGLLVTELMG G+NY+TGDYS+GA GYW+E G IQY VEEITI+G +++M 
Sbjct: 364 FKAMLKKLDTGLLVTELMGQGVNYVTGDYSRGASGYWVEKGVIQYPVEEITIAGNMKDML 423

Query: 429 KQIVAIGSDVLTRNSNTSGSILIENMIIAG 458
            QIVAIG+D L R +  +GS+LIE+M +AG
Sbjct: 424 AQIVAIGADTLIRGTKQTGSVLIESMTVAG 453

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|300311183|ref|YP_003775275.1| Zn-dependent protease [Herbaspirillum seropedicae SmR1] gi|300073968|gb|ADJ63367.1| Zn-dependent protease protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409405681|ref|ZP_11254143.1| Zn-dependent protease [Herbaspirillum sp. GW103] gi|386434230|gb|EIJ47055.1| Zn-dependent protease [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|134094233|ref|YP_001099308.1| hypothetical protein HEAR0999 [Herminiimonas arsenicoxydans] gi|133738136|emb|CAL61181.1| Protein pmbA (Protein tldE) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|399019701|ref|ZP_10721847.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. CF444] gi|398097592|gb|EJL87896.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|152980976|ref|YP_001352824.1| PmbA protein [Janthinobacterium sp. Marseille] gi|151281053|gb|ABR89463.1| PmbA protein [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|398837370|ref|ZP_10594671.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. YR522] gi|398208712|gb|EJM95421.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|427400567|ref|ZP_18891805.1| hypothetical protein HMPREF9710_01401 [Massilia timonae CCUG 45783] gi|425720392|gb|EKU83314.1| hypothetical protein HMPREF9710_01401 [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|395764031|ref|ZP_10444700.1| Zn-dependent protease [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|445499345|ref|ZP_21466200.1| TldD/PmbA DNA gyrase modulator [Janthinobacterium sp. HH01] gi|444789340|gb|ELX10888.1| TldD/PmbA DNA gyrase modulator [Janthinobacterium sp. HH01] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P57191PMBA_BUCAINo assigned EC number0.38790.84740.8721yesN/A
P45077PMBA_HAEINNo assigned EC number0.38060.94980.9667yesN/A
Q89AY6PMBA_BUCBPNo assigned EC number0.37950.93460.9575yesN/A
Q8KA30PMBA_BUCAPNo assigned EC number0.39040.92150.9463yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
PRK11040446 PRK11040, PRK11040, peptidase PmbA; Provisional 1e-132
COG0312454 COG0312, TldD, Predicted Zn-dependent proteases an 4e-97
pfam01523289 pfam01523, PmbA_TldD, Putative modulator of DNA gy 4e-60
PRK10735481 PRK10735, tldD, protease TldD; Provisional 2e-09
>gnl|CDD|182922 PRK11040, PRK11040, peptidase PmbA; Provisional Back     alignment and domain information 
 Score =  389 bits (1002), Expect = e-132
 Identities = 173/448 (38%), Positives = 273/448 (60%), Gaps = 15/448 (3%)

Query: 15  KSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQ 74
           +   ++     L  A    +  + +  ++  G SV  R G+++ +E N+D  + + +Y Q
Sbjct: 11  RKILEEAVSTALELASG-KSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYHQ 69

Query: 75  DGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTP 134
             K    G++S++D   +++  T+ AA +IAR+T+ D  AG  D+  L  +  D  L+ P
Sbjct: 70  QRK----GSASSTDLSPQAIARTVQAALDIARYTSPDPCAGPADKELLAFDAPDLDLFHP 125

Query: 135 WFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHF---LLANSHGFMSGYPFSK 191
             +  D+A  +A R E  A   +  I N E     +  SH+   +  NSHG +  Y  S+
Sbjct: 126 AEVDPDEAIELAARAEQAALQADKRITNTEGG---SFNSHYGIKVFGNSHGMLQSYCSSR 182

Query: 192 HIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPV 251
           H +S   IA +  +M+RD  Y+       L  PE +G   A+RT+SRL  +K+ST K PV
Sbjct: 183 HSLSSCVIAEENGDMERDYAYTIGRAMDDLQTPEWVGAECARRTLSRLSPRKLSTMKAPV 242

Query: 252 LFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSF 311
           +F A +A  L       ISG S+YRKSTFL+DSLGK+I    + I E PH+L    S+ F
Sbjct: 243 IFAAEVATGLFGHLVGAISGGSVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASTPF 302

Query: 312 DNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKE 371
           D+EGV+T++R ++K+G++Q + L++YSA+KLG+K+TG++GG H+  I         + ++
Sbjct: 303 DSEGVRTERRDIIKDGVLQTWLLTSYSARKLGLKSTGHAGGIHNWRIAG----QGLSFEQ 358

Query: 372 MLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQI 431
           MLK+M TGL+VTELMG G++ +TGDYS+GA G+W+ENG+IQY V EITI+G L++M++ I
Sbjct: 359 MLKEMGTGLVVTELMGQGVSAVTGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDMWRNI 418

Query: 432 VAIGSDVLTRNSNTSGSILIENMIIAGK 459
           V +G+D+ TR++   GS+L+  M IAG+
Sbjct: 419 VTVGNDIETRSNIQCGSVLLPEMKIAGQ 446

Length = 446
>gnl|CDD|223389 COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only] Back     alignment and domain information
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase Back     alignment and domain information
>gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 459
PRK11040446 peptidase PmbA; Provisional 100.0
PRK10735481 tldD protease TldD; Provisional 100.0
COG0312454 TldD Predicted Zn-dependent proteases and their in 100.0
PF01523293 PmbA_TldD: Putative modulator of DNA gyrase; Inter 100.0
>PRK11040 peptidase PmbA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.4e-90  Score=713.20  Aligned_cols=440  Identities=38%  Similarity=0.659  Sum_probs=409.9

Q ss_pred             cccCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCeeeEEEEecceeEEEEEEEeCCeeeEEEEEEeCCCC
Q psy8848          11 FIYSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFC   90 (459)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~a~~~g~~~~ev~~~~~~~~~v~~~~~~i~~~~~~~~~gi~iRv~~~~gr~~~~G~ast~~l~   90 (459)
                      |..+++++++++++++++|++ |+++|||++++.++.++.+++|+|+++....+.|++|||++ |||   |||++|++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~a~~-~~d~~Ei~~~~~~~~si~~~~g~l~~~~~~~~~gvgvRVi~-~gk---~Gfa~t~~l~   81 (446)
T PRK11040          7 VAAQRKILEEAVSTALELASG-KSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALGITVYH-QQR---KGSASSTDLS   81 (446)
T ss_pred             hhhhHHHHHHHHHHHHHHHHh-CCCcEEEEEEEcCceEEEEECCccceEEeccCCCEEEEEEE-CCe---EEEEEecCCC
Confidence            345567899999999999987 89999999999999999999999999999999999999999 999   9999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccCCCCCCccCCCCCCCHHHHHHHHHHHHHHHhcCCCCeeEecceEEEE
Q psy8848          91 KKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTT  170 (459)
Q Consensus        91 ~~~l~~~v~~A~~~a~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  170 (459)
                      ++++++++++|+++|+..+++++..+++...+...++....|++..+++++++++++++++.+++.+++|.++.++.|+.
T Consensus        82 ~~~l~~av~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  161 (446)
T PRK11040         82 PQAIARTVQAALDIARYTSPDPCAGPADKELLAFDAPDLDLFHPAEVDPDEAIELAARAEQAALQADKRITNTEGGSFNS  161 (446)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccCCCChHHcccCCCcccccCcCCCCHHHHHHHHHHHHHHHHhcCCCeEeecCceEEe
Confidence            99999999999999999888776543332222223344556788888999999999999999988889998887668999


Q ss_pred             EEEEEEEEecCCcceeeeeeEEEEEEEEEEEeCCceeeeeeeccCCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCceEe
Q psy8848         171 QQSHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCP  250 (459)
Q Consensus       171 ~~~~~~i~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~a~~~l~a~~~~~g~y~  250 (459)
                      ...+++|+||+|+.++++.+.+++++.+++++++...++|++..++.+.++++++.++++|+++|+.+|+++++++|+||
T Consensus       162 ~~~~~~i~NS~G~~~~~~~~~~~~~~~~~a~~~g~~~s~~~~~~~~~~~~l~~~~~~~~~a~~~a~~~l~a~~i~~g~~~  241 (446)
T PRK11040        162 HYGIKVFGNSHGMLQSYCSSRHSLSSCVIAEENGDMERDYAYTIGRAMDDLQTPEWVGAECARRTLSRLSPRKLSTMKAP  241 (446)
T ss_pred             eEEEEEEEeCCCcccccccccEEEEEEEEEEcCCceeccceeeeecChhhcCCHHHHHHHHHHHHHHhcCCccCCCCeee
Confidence            99999999999999999999999999999987767777888888888888867899999999999999999999999999


Q ss_pred             EEecchhHHHHHHHHHhcccccccccccCccccCCCCeecCCCceEEeCCCCCCCCcccccCCcCccccceeEEeCcEEc
Q psy8848         251 VLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQ  330 (459)
Q Consensus       251 Vvl~p~a~~~ll~~~~~~l~~~~~~~g~S~l~~klG~~vas~~ltl~Ddp~~~~~~gs~~fDdEGv~t~~~~LIe~Gvl~  330 (459)
                      |||+|.+++.|++++.++|+|+++++|+|+|++|+|++||||.|||+|||++|+++++++|||||+|+++++|||||||+
T Consensus       242 Vi~~p~~~~~ll~~~~~~~~~~~v~~g~S~~~~klGe~v~s~~~ti~Ddp~~~~~~~s~~fDdEGv~~~~~~lIe~Gvlk  321 (446)
T PRK11040        242 VIFAAEVATGLFGHLVGAISGGSVYRKSTFLLDSLGKQILPEWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGVLQ  321 (446)
T ss_pred             EEECchHHHHHHHHHHHhcCHHHHhcCCccccccCCCeecCCccEEEccCCCCCCCcCCCcCCCCCccCccEEEECCEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccChHHHHHcCCCCCcCcccccceEEeCCCCCCCCCHHHHHHcCCCEEEEEEeCCCccccccccEEEeeEEEEEeCCE
Q psy8848         331 GYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGK  410 (459)
Q Consensus       331 ~~l~d~~~A~~~g~~~TGna~~~~N~~i~~g~~~~~~s~~eli~~~~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenGe  410 (459)
                      +||||++||+++|.+|||||++++|++|+||    +.|++|||+++++||||+++||+++|++||+||+++.||||||||
T Consensus       322 ~~l~~~~~A~~~g~~~TGna~~~~n~~i~~g----~~s~~eli~~~~~Gi~v~~~~g~~~~~~tGdFs~~~~g~~IenGe  397 (446)
T PRK11040        322 TWLLTSYSARKLGLKSTGHAGGIHNWRIAGQ----GLSFEQMLKEMGTGLVVTELMGQGVSAVTGDYSRGAAGFWVENGE  397 (446)
T ss_pred             eeccCHHHHHHcCCCCCcCCCCcceEEECCC----CCCHHHHHHhhCCEEEEEeccCCccCCCcccEEeeEeEEEEECCE
Confidence            9999999999999999999999999999999    999999999999999999999988999999999999999999999


Q ss_pred             EecceeceEEEecHHHHHHhhHHccCcccccCCCccceEEEeeEEEecC
Q psy8848         411 IQYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK  459 (459)
Q Consensus       411 i~~pV~~~~isgn~~~~L~~I~~v~~d~~~~~~~~~P~i~v~~l~v~G~  459 (459)
                      +++||++++|+||++++|++|++||+|+++.++..||+++|++|+|+|+
T Consensus       398 i~~pv~~~~i~gn~~~~L~~i~~vg~~~~~~~~~~~~~~~~~~~~V~G~  446 (446)
T PRK11040        398 IQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ  446 (446)
T ss_pred             EcceeeeEEEEecHHHHHHhhhhhcccceecCCCcCCeEEECcEEeccC
Confidence            9999999999999999999999999999998889999999999999996

>PRK10735 tldD protease TldD; Provisional Back     alignment and domain information
>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only] Back     alignment and domain information
>PF01523 PmbA_TldD: Putative modulator of DNA gyrase; InterPro: IPR002510 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
3tv9_A457 Crystal Structure Of Putative Peptide Maturation Pr 7e-86
3qtd_A449 Crystal Structure Of Putative Modulator Of Gyrase ( 4e-82
1vpb_A451 Crystal Structure Of A Putative Modulator Of Dna Gy 9e-38
1vl4_A447 Crystal Structure Of A Putative Modulator Of A Dna 2e-36
>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein From Shigella Flexneri Length = 457 Back     alignment and structure 
Iteration: 1

 Score =  314 bits (804), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 163/448 (36%), Positives = 271/448 (60%), Gaps = 11/448 (2%)
Query: 12  IYSKSEFQQLAQDMLNYAKKIGASHS---SIEFNEGNGFSVFVRKGKIDVIEQNNDKNMN 68
           +Y +S  +++ ++ ++ A ++ +  S    +  ++  G SV  R G+++ +E N+D  + 
Sbjct: 18  LYFQSNARKILEEAVSTALELASGKSDGAEVAVSKTTGISVSTRYGEVENVEFNSDGALG 77
Query: 69  VIIYIQDGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLD 128
           + +Y Q+ K    G++S++D   +++  T+ AA +IAR+T+ D  AG+ D+  L  +  +
Sbjct: 78  ITVYHQNRK----GSASSTDLSPQAIARTVQAALDIARYTSPDPCAGVADKELLAFDAPN 133
Query: 129 FKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYP 188
             L+ P  +S D+A  +A R E  A   +  I N E     +     +  NSHG + GY 
Sbjct: 134 LDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEGGSFNSHYGVKVFGNSHGXLQGYC 193
Query: 189 FSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRK 248
            ++H +    IA +  + +RD  Y+       L  PE +G   A+RT+SRL  +K+ST K
Sbjct: 194 STRHSLFSCVIAEENGDXERDYAYTIGRAXSDLQTPEWVGADCARRTLSRLSPRKLSTXK 253
Query: 249 CPVLFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGS 308
            PV+F   +A  L       I+G S+YRKSTFL+DSLGK+I    + I E PH+L    S
Sbjct: 254 APVIFANEVATGLFGHLVGAIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLAS 313
Query: 309 SSFDNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDN 368
           + FD+EGV+T++R ++K+GI+  + L++YSA+KLG+K+TG++GG H+  I         +
Sbjct: 314 TPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHAGGIHNWRIAGQGL----S 369
Query: 369 LKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMF 428
            ++ LK+  TGL+VTEL G G++ ITGDYS+GA G+W+ENG+IQY V EITI+G L++ +
Sbjct: 370 FEQXLKEXGTGLVVTELXGQGVSAITGDYSRGAAGFWVENGEIQYPVSEITIAGNLKDXW 429
Query: 429 KQIVAIGSDVLTRNSNTSGSILIENMII 456
           + IV +G+D+ TR++   GS+L+    I
Sbjct: 430 RNIVTVGNDIETRSNIQCGSVLLPEXKI 457
>pdb|3QTD|A Chain A, Crystal Structure Of Putative Modulator Of Gyrase (Pmba) From Pseudomonas Aeruginosa Pao1 Length = 449 Back     alignment and structure
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase (Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.75 A Resolution Length = 451 Back     alignment and structure
>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase (Tm0727) From Thermotoga Maritima Msb8 At 1.95 A Resolution Length = 447 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query459
3qtd_A449 PMBA protein; putative modulator of gyrase (PMBA), 0.0
3tv9_A457 Putative peptide maturation protein; structural ge 1e-178
1vpb_A451 Putative modulator of DNA gyrase; structural genom 1e-170
1vl4_A447 PMBA-related protein; structural genomics, joint c 1e-159
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa} Length = 449 Back     alignment and structure
 Score =  517 bits (1333), Expect = 0.0
 Identities = 171/444 (38%), Positives = 271/444 (61%), Gaps = 8/444 (1%)

Query: 16  SEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQD 75
            + ++  + ++  A++ GAS   +  +   G S  VR+G+++ +E N D+   + +Y   
Sbjct: 14  PDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYA-- 71

Query: 76  GKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPW 135
           G++   G++STS   + ++ +T+ AA  IAR T+ D  AGL D   +     +  LY PW
Sbjct: 72  GQRK--GSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPW 129

Query: 136 FLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSKHIIS 195
            LS + A   A  CE  AF  +  +   + T + T Q   +  NSHGF+ GY  ++H +S
Sbjct: 130 SLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYASTRHSLS 189

Query: 196 ISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVLFEA 255
              IA    +MQRD WY  N   + L   E IG  AA+R  SRL A+ + T + PVLF  
Sbjct: 190 CVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAP 249

Query: 256 PLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEG 315
            +A  L   F   ISG SLYRKS+FL  +LG+++F   + I E PH++G+ GS+SFD++G
Sbjct: 250 EIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDG 309

Query: 316 VKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKK 375
           + T  +  V+NG +  Y L TYS +KLG+ +T N+GG H+L +    +   ++   ++++
Sbjct: 310 LATYAKPFVENGELVSYVLGTYSGRKLGLPSTANAGGVHNLFV----SHGDEDQAALIRR 365

Query: 376 MNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQIVAIG 435
           M  GLLVTELMG G+N +TGDYS+GA GYW+ENG+IQ+ V+E+TI+  L+++F++IVA+G
Sbjct: 366 MERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVG 425

Query: 436 SDVLTRNSNTSGSILIENMIIAGK 459
            D+  R +  +GS+L+E+M++AG+
Sbjct: 426 KDIERRGNLHTGSVLVESMMVAGR 449
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri} Length = 457 Back     alignment and structure
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1 Length = 451 Back     alignment and structure
>1vl4_A PMBA-related protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS regulation; 1.95A {Thermotoga maritima} SCOP: d.283.1.1 Length = 447 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
3qtd_A449 PMBA protein; putative modulator of gyrase (PMBA), 100.0
3tv9_A457 Putative peptide maturation protein; structural ge 100.0
1vpb_A451 Putative modulator of DNA gyrase; structural genom 100.0
1vl4_A447 PMBA-related protein; structural genomics, joint c 100.0
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=100.00  E-value=5.1e-97  Score=770.00  Aligned_cols=439  Identities=39%  Similarity=0.692  Sum_probs=423.3

Q ss_pred             cCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCeeeEEEEecceeEEEEEEEeCCeeeEEEEEEeCCCCHH
Q psy8848          13 YSKSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKK   92 (459)
Q Consensus        13 ~~~~~~~~~~~~~l~~a~~~g~~~~ev~~~~~~~~~v~~~~~~i~~~~~~~~~gi~iRv~~~~gr~~~~G~ast~~l~~~   92 (459)
                      +.+++++++++++|+.|++.|+++|||++++.++.++++++|+|++...+.+.|++|||++ |+|   +||+++++++++
T Consensus        11 ~~~~~~~~~~~~~l~~a~~~gad~aev~~~~~~~~sv~~~~g~v~~~~~~~~~g~gvRv~~-~~~---~G~ast~~ls~~   86 (449)
T 3qtd_A           11 SVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYA-GQR---KGSASTSATGEA   86 (449)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE-TTE---EEEEEESCCSHH
T ss_pred             chhHHHHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCEeeEEEeeeeeeEEEEEEE-CCe---EEEEEeCCCCHH
Confidence            4577889999999999999999999999999999999999999999999999999999999 999   999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCCCCCCcccCCCCCCccCCCCCCCHHHHHHHHHHHHHHHhcCCCCeeEecceEEEEEE
Q psy8848          93 SLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTPWFLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQ  172 (459)
Q Consensus        93 ~l~~~v~~A~~~a~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  172 (459)
                      +|++++++|+++|+..+++++.+||++..++..++.+..|||.++++++++++++++++.+++.+++|+++.+++|+...
T Consensus        87 ~l~~~v~~A~~~A~~~~~d~~~~l~~~~~~~~~~~~~~~~~p~~~~~~e~i~ll~~~~~~a~~~d~~i~~~~~~~~~~~~  166 (449)
T 3qtd_A           87 AIRETVAAALAIARHTSEDECAGLADAALMARELPELDLYHPWSLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQ  166 (449)
T ss_dssp             HHHHHHHHHHHHHHHSCCCTTCSCCCGGGBCSCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhhccCCCcccCCCChhhcccccCcccccCcccCCHHHHHHHHHHHHHHHHhcCCCEEEECcEEEEEEE
Confidence            99999999999999999998888888765555677777899999999999999999999999889999988778999999


Q ss_pred             EEEEEEecCCcceeeeeeEEEEEEEEEEEeCCceeeeeeeccCCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCceEeEE
Q psy8848         173 SHFLLANSHGFMSGYPFSKHIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPVL  252 (459)
Q Consensus       173 ~~~~i~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~a~~~l~a~~~~~g~y~Vv  252 (459)
                      .++.|+||+|+.+++..+++++++++++++++.++++|++.+++.+.++++++.++++|+++|+.+|+++++|+|+||||
T Consensus       167 ~~~~~~nS~G~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vv  246 (449)
T 3qtd_A          167 GCRVYGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVL  246 (449)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEESSGGGSCCHHHHHHHHHHHHHHTTTCBCCCCEEEEEE
T ss_pred             EEEEEEeCCCceEEEeeceEEEEEEEEEEcCCceeeeeeeccccChhHccCHHHHHHHHHHHHHHhcCCccCCCCeEEEE
Confidence            99999999999999999999999999999988899999998888888887899999999999999999999999999999


Q ss_pred             ecchhHHHHHHHHHhcccccccccccCccccCCCCeecCCCceEEeCCCCCCCCcccccCCcCccccceeEEeCcEEccc
Q psy8848         253 FEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQGY  332 (459)
Q Consensus       253 l~p~a~~~ll~~~~~~l~~~~~~~g~S~l~~klG~~vas~~ltl~Ddp~~~~~~gs~~fDdEGv~t~~~~LIe~Gvl~~~  332 (459)
                      |+|.+++.|+|+++++++|+++++|+|+|++|+|++|+|+.|||+|||++|+++|+++|||||+|+++++|||||||++|
T Consensus       247 l~p~~~~~ll~~~~~~~~g~~v~~g~S~l~~klG~~v~s~~vti~dDp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~  326 (449)
T 3qtd_A          247 FAPEIAVGLFGHFLGAISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSY  326 (449)
T ss_dssp             ECHHHHHHHHHHHHHHTBHHHHHTTCCTTTTCTTCBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCC
T ss_pred             ECChHHHHHHHHHHHhcChhhHhcCCCcccccCCCEecCCceEEEECCCCCCCCCCCCCCCCCCcCCccEEEECCEEccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChHHHHHcCCCCCcCcccccceEEeCCCCCCCCCHHHHHHcCCCEEEEEEeCCCccccccccEEEeeEEEEEeCCEEe
Q psy8848         333 FLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQ  412 (459)
Q Consensus       333 l~d~~~A~~~g~~~TGna~~~~N~~i~~g~~~~~~s~~eli~~~~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenGei~  412 (459)
                      |||+++|+++|++|||||+||+|++|+||    +.+++|||+++++||||++++|+++||.||+||+++.|||||||||+
T Consensus       327 l~d~~~A~~~G~~~TGna~~~~N~~i~~G----~~s~eeli~~~~~Gl~v~~~~G~~vn~~tG~fs~~~~gy~IenGei~  402 (449)
T 3qtd_A          327 VLGTYSGRKLGLPSTANAGGVHNLFVSHG----DEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAAGYWVENGEIQ  402 (449)
T ss_dssp             BCCHHHHHHHTSCCCSCTTCCSSEEECCC----SCCHHHHHHHHCSEEEEEEEESCCBCTTTCEEEEEEEEEEEETTEEE
T ss_pred             ccCHHHHHHhCCCCCcCccCcceEEEeCC----CCCHHHHHHhcCCEEEEEeccCCCcCCCCceEEeEEEEEEEECCEEe
Confidence            99999999999999999999999999999    99999999999999999999999999999999999999999999999


Q ss_pred             cceeceEEEecHHHHHHhhHHccCcccccCCCccceEEEeeEEEecC
Q psy8848         413 YSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAGK  459 (459)
Q Consensus       413 ~pV~~~~isgn~~~~L~~I~~v~~d~~~~~~~~~P~i~v~~l~v~G~  459 (459)
                      +||++++|+||++++|++|.+||+|+++.+++.||+|+|++|+|+|+
T Consensus       403 ~pV~~~ti~Gn~~~~l~~I~~vg~d~~~~~~~~~Psi~i~~~~V~G~  449 (449)
T 3qtd_A          403 FPVQEVTIAANLRDLFRRIVAVGKDIERRGNLHTGSVLVESMMVAGR  449 (449)
T ss_dssp             EEEEEEEEEEEHHHHHHTEEEECSCCCCSSSEECCCEEEEEEEEECC
T ss_pred             eeeeeEEEEEcHHHHHHhhHhhccCcEecCCCcCCeEEECcEEEecC
Confidence            99999999999999999999999999999999999999999999996
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri} Back     alignment and structure
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1 Back     alignment and structure
>1vl4_A PMBA-related protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS regulation; 1.95A {Thermotoga maritima} SCOP: d.283.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 459
d1vpba_439 d.283.1.1 (A:) Putative modulator of DNA gyrase BT 9e-77
d1vl4a_433 d.283.1.1 (A:) PmbA-related protein TM0727 {Thermo 7e-69
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 439 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Putative modulator of DNA gyrase, PmbA/TldD
superfamily: Putative modulator of DNA gyrase, PmbA/TldD
family: Putative modulator of DNA gyrase, PmbA/TldD
domain: Putative modulator of DNA gyrase BT3649
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score =  244 bits (623), Expect = 9e-77
 Identities = 110/447 (24%), Positives = 209/447 (46%), Gaps = 14/447 (3%)

Query: 15  KSEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQ 74
             E ++LAQ  ++YA K G   + +     +  S  +R  K+D ++Q ++  +++ +Y+ 
Sbjct: 3   TDENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYV- 61

Query: 75  DGKKMFYGNSSTSDFCKKSLYDTINAAYNIARFTASDNFAGLPDENTLEMNPLDFKLYTP 134
           DG+    G+ ST+   +K L   I    +  R+ A D    L D +              
Sbjct: 62  DGRY---GSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYD 118

Query: 135 WFLS---IDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQSHFLLANSHGFMSGYPFSK 191
              +    DD   +A     EA   +  I++  ++     +       S+GF      + 
Sbjct: 119 AKFASLNPDDKIEMAKAVAEEALGKDERIISVGSS-YGDGEDFAYRLISNGFEGETKSTW 177

Query: 192 HIISISPIAIKGKEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPV 251
           + +S         E +   ++  +S        + IG  A +R + +L  KK+ + K  +
Sbjct: 178 YSLSADITIRGEGEARPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTM 237

Query: 252 LFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSF 311
           + +   +  LL+     ++G++L +K++FL++ L +KI S  + + ++PH++ + G+  F
Sbjct: 238 VVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYF 297

Query: 312 DNEGVKTQKRLVVKNGIIQGYFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKE 371
           DNEG+ T++R +   G++  YF+ TY+AKK+G+  T           I        NL  
Sbjct: 298 DNEGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPT------ISGSSILVMETGDKNLDG 351

Query: 372 MLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKIQYSVEEITISGKLQNMFKQI 431
           ++  +  G+LVT   G   N  TGD+S G  G+ IENGK+   V E+ ++G L  ++  +
Sbjct: 352 LIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKLTQPVSEMNVTGNLITLWNSL 411

Query: 432 VAIGSDVLTRNSNTSGSILIENMIIAG 458
           VA G+D    +S    S++ E +  +G
Sbjct: 412 VATGNDPRLNSSWRIPSLVFEGVDFSG 438
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]} Length = 433 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query459
d1vpba_439 Putative modulator of DNA gyrase BT3649 {Bacteroid 100.0
d1vl4a_433 PmbA-related protein TM0727 {Thermotoga maritima [ 100.0
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Putative modulator of DNA gyrase, PmbA/TldD
superfamily: Putative modulator of DNA gyrase, PmbA/TldD
family: Putative modulator of DNA gyrase, PmbA/TldD
domain: Putative modulator of DNA gyrase BT3649
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=4.3e-89  Score=708.60  Aligned_cols=431  Identities=28%  Similarity=0.436  Sum_probs=402.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCeeeEEEEecceeEEEEEEEeCCeeeEEEEEEeCCCCHHHHH
Q psy8848          16 SEFQQLAQDMLNYAKKIGASHSSIEFNEGNGFSVFVRKGKIDVIEQNNDKNMNVIIYIQDGKKMFYGNSSTSDFCKKSLY   95 (459)
Q Consensus        16 ~~~~~~~~~~l~~a~~~g~~~~ev~~~~~~~~~v~~~~~~i~~~~~~~~~gi~iRv~~~~gr~~~~G~ast~~l~~~~l~   95 (459)
                      ++.+++++++|++|+++|+++|||+++++++.++.+++|++++++.+.+.|++|||++ |||   +||++|+++++++|+
T Consensus         4 ~~~~~lae~~l~~a~~~Ga~~aev~~~~~~~~si~~~~g~le~~~~~~~~gigiRVi~-dgr---~G~ast~~l~~~~l~   79 (439)
T d1vpba_           4 DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYV-DGR---YGSISTNRLNRKELE   79 (439)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEE-TTE---EEEEEESCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCCEEEEEEEeeeeEEEEEECCEeeEEEEcccccEEEEEEE-CCE---EEEEEeCCCCHHHHH
Confidence            4558999999999999999999999999999999999999999999999999999999 999   999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCCCCCCCcccC-CCCCCccCCCC--CCCHHHHHHHHHHHHHHHhcCCCCeeEecceEEEEEE
Q psy8848          96 DTINAAYNIARFTASDNFAGLPDENTLEM-NPLDFKLYTPW--FLSIDDAKLIAYRCENEAFNFNSLIVNNENTGVTTQQ  172 (459)
Q Consensus        96 ~~v~~A~~~a~~~~~d~~~~l~~~~~~~~-~~~~~~~~~~~--~~~~ee~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  172 (459)
                      +++++|+++|+..++|++..||++..+.+ ..+....|++.  .+++++++++++++++.+++.++++..+. +.|....
T Consensus        80 ~~v~~A~~~Ak~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ie~~~~~~~~~~~~~~~i~~~~-~~~~~~~  158 (439)
T d1vpba_          80 TFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVG-SSYGDGE  158 (439)
T ss_dssp             HHHHHHHHHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSCTTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEEE-EEEEEEE
T ss_pred             HHHHHHHHHhhhcccCcccccccchhhcccCCcccceecccccccCHHHHHHHHHHHHHHhhhcccceeeec-cceeeee
Confidence            99999999999999999888987665433 33445566663  78999999999999999998888887765 7899999


Q ss_pred             EEEEEEecCCcceeeeeeEEEEEEEEEEEeC-CceeeeeeeccCCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCceEeE
Q psy8848         173 SHFLLANSHGFMSGYPFSKHIISISPIAIKG-KEMQRDNWYSSNSDPKKLDQPEIIGFYAAKRTISRLKAKKISTRKCPV  251 (459)
Q Consensus       173 ~~~~i~nS~G~~~~~~~~~~~~~~~~~a~~g-~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~a~~~l~a~~~~~g~y~V  251 (459)
                      ..+.++||+|+..+++.+.+++++.+++..+ +.+.++|++.+.+.++++ +++.++++|+++|+..++++++++|+|||
T Consensus       159 ~~~~~~nS~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~a~~~l~a~~~~~g~~~V  237 (439)
T d1vpba_         159 DFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMNDL-IKKGIGQKALERVLRKLGQKKVQSGKYTM  237 (439)
T ss_dssp             EEEEEEETTTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEESSGGGS-CCSSHHHHHHHHHHTTTTCBCCCCEEEEE
T ss_pred             eEEEEEecCCceeEEEEEEeeeeeEEEEEecccccccccceecccccccc-CHHHHHHHHHHHhhhhccccccccceeeE
Confidence            9999999999999999999999998887543 345678888888887766 57889999999999999999999999999


Q ss_pred             EecchhHHHHHHHHHhcccccccccccCccccCCCCeecCCCceEEeCCCCCCCCcccccCCcCccccceeEEeCcEEcc
Q psy8848         252 LFEAPLAFELLNIFARLISGNSLYRKSTFLVDSLGKKIFSSHIQIIEDPHILGSFGSSSFDNEGVKTQKRLVVKNGIIQG  331 (459)
Q Consensus       252 vl~p~a~~~ll~~~~~~l~~~~~~~g~S~l~~klG~~vas~~ltl~Ddp~~~~~~gs~~fDdEGv~t~~~~LIe~Gvl~~  331 (459)
                      ||+|.+++.|+|+++++++++++++|+|+|++++|++|+||.|||+|||++|+++++++|||||+|+++++|||||||++
T Consensus       238 il~p~~~~~ll~~~~~~~~~~~~~~g~S~l~~~lg~~v~s~~lti~ddp~~~~~~~s~~fDdEGv~t~~~~lIe~Gvl~~  317 (439)
T d1vpba_         238 VVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNT  317 (439)
T ss_dssp             EECTTTHHHHHHHHHHTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECC
T ss_pred             EeecchhhhhHHHHHhhhccchhhccchhhhhhhhhhhcCccceEEEeccCCCccccccccccccccccceeeeCcEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHcCCCCCcCcccccceEEeCCCCCCCCCHHHHHHcCCCEEEEEEeCCCccccccccEEEeeEEEEEeCCEE
Q psy8848         332 YFLSTYSAKKLGMKTTGNSGGAHHLIIISNKTKSSDNLKEMLKKMNTGLLVTELMGDGINYITGDYSKGAFGYWIENGKI  411 (459)
Q Consensus       332 ~l~d~~~A~~~g~~~TGna~~~~N~~i~~g~~~~~~s~~eli~~~~~Gi~v~~~~g~~~n~~tG~Fs~~~~g~~IenGei  411 (459)
                      ||||++||+++|.+||||  +|+|++++||    +.+++|||+++++||||++++|+++||.||+||++++||||||||+
T Consensus       318 ~l~~~~~A~~~g~~~tg~--~~~n~~i~pg----~~s~~eli~~~~~Gl~v~~~~g~~~n~~tG~fs~~~~g~~ienGei  391 (439)
T d1vpba_         318 YFIDTYNAKKMGVDPTIS--GSSILVMETG----DKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIEGFLIENGKL  391 (439)
T ss_dssp             CBCCHHHHHHHTSCCCCS--SCSCEEECCC----SCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEEEEEEETTEE
T ss_pred             cccChhhHHhcCCCcccc--cccccccCCC----CCCHHHHhhcCCCEEEEEeCccCccCCCCceEEEEEeEEEEECCEE
Confidence            999999999999999999  5899999999    9999999999999999999999888999999999999999999999


Q ss_pred             ecceeceEEEecHHHHHHhhHHccCcccccCCCccceEEEeeEEEec
Q psy8848         412 QYSVEEITISGKLQNMFKQIVAIGSDVLTRNSNTSGSILIENMIIAG  458 (459)
Q Consensus       412 ~~pV~~~~isgn~~~~L~~I~~v~~d~~~~~~~~~P~i~v~~l~v~G  458 (459)
                      ++||++++|+||++++|++|.+||+|.++.++..||+++|++|+|+|
T Consensus       392 ~~~v~~~~i~gn~~~~l~~i~~ig~d~~~~~~~~~P~~~v~~~~v~G  438 (439)
T d1vpba_         392 TQPVSEMNVTGNLITLWNSLVATGNDPRLNSSWRIPSLVFEGVDFSG  438 (439)
T ss_dssp             EEEEEEEEEEEEHHHHHHTEEEECSCCCTTSSEECCCEEEEEEEEEE
T ss_pred             eeeEeeeEEEEcHHHHHhhhhhhcCceEecCCCcCCcEEECcEEEec
Confidence            99999999999999999999999999999999999999999999998
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure