Psyllid ID: psy8857

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV
ccccccccccccccccccEEcccEEEEEcccccEEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHcccEEEEEEEccccccccccccccccc
cccHHHcccccccHEEEccccccEEEEEEccccEEEEEEcccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHcccEEEEEEcccccccccccccccccc
MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITitdrkgctlswassgsvnfkgsrkstpFAAQVAAESAGKIAIEHGIKNLevrikgpgpgreSSVRALNNLgikitqiedvtpiphngcrpskrrrv
MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGikitqiedvtpiphngcrpskrrrv
MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV
***********IRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSV*******************AGKIAIEHGIKNLEVRI************ALNNLGIKITQIEDVT***************
*******************ITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPS*R***
MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNG*********
************RKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPS*****
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MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query133 2.2.26 [Sep-21-2011]
A4JAR4133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
Q2SU51133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
Q39KE3133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
Q63Q35133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
A3NEF5133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
Q3JMT7133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
A3P089133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
A1V879133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
Q62GM9133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
A2S7K0133 30S ribosomal protein S11 yes N/A 1.0 1.0 0.751 1e-55
>sp|A4JAR4|RS11_BURVG 30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1 Back     alignment and function desciption
 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/133 (75%), Positives = 116/133 (87%)

Query: 1   MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
           MAK  N    R+RKK+KK++ EGV H+HASFNNTIITITDR+G  L+WA+SG   FKGSR
Sbjct: 1   MAKASNTAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR 60

Query: 61  KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
           KSTPFAAQVAAESAG++A+E+G+KNLEVRIKGPGPGRES+VRAL+ LGIKIT I DVTPI
Sbjct: 61  KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTPI 120

Query: 121 PHNGCRPSKRRRV 133
           PHNGCRP KRRR+
Sbjct: 121 PHNGCRPPKRRRI 133
Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.
Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)
>sp|Q2SU51|RS11_BURTA 30S ribosomal protein S11 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|Q39KE3|RS11_BURS3 30S ribosomal protein S11 OS=Burkholderia sp. (strain 383) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|Q63Q35|RS11_BURPS 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain K96243) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|A3NEF5|RS11_BURP6 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 668) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|Q3JMT7|RS11_BURP1 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|A3P089|RS11_BURP0 30S ribosomal protein S11 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|A1V879|RS11_BURMS 30S ribosomal protein S11 OS=Burkholderia mallei (strain SAVP1) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|Q62GM9|RS11_BURMA 30S ribosomal protein S11 OS=Burkholderia mallei (strain ATCC 23344) GN=rpsK PE=3 SV=1 Back     alignment and function description
>sp|A2S7K0|RS11_BURM9 30S ribosomal protein S11 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
300309480134 30S ribosomal protein S11 [Herbaspirillu 1.0 0.992 0.805 3e-56
398833117134 30S ribosomal protein S11 [Herbaspirillu 1.0 0.992 0.783 1e-54
238025956133 30S ribosomal protein S11 [Burkholderia 1.0 1.0 0.759 2e-54
332286120133 30S ribosomal protein S11 [Pusillimonas 1.0 1.0 0.751 2e-54
167564392133 ribosomal protein S11 [Burkholderia okla 1.0 1.0 0.751 8e-54
53720797133 30S ribosomal protein S11 [Burkholderia 1.0 1.0 0.751 1e-53
83748173133 SSU ribosomal protein S11P [Ralstonia so 1.0 1.0 0.751 1e-53
17547714133 30S ribosomal protein S11 [Ralstonia sol 1.0 1.0 0.751 1e-53
167587748133 ribosomal protein S11 [Burkholderia ubon 1.0 1.0 0.744 1e-53
91785441134 30S ribosomal protein S11 [Burkholderia 1.0 0.992 0.753 1e-53
>gi|300309480|ref|YP_003773572.1| 30S ribosomal protein S11 [Herbaspirillum seropedicae SmR1] gi|409408725|ref|ZP_11257160.1| 30S ribosomal protein S11 [Herbaspirillum sp. GW103] gi|415943235|ref|ZP_11556035.1| 30S ribosomal protein S11 [Herbaspirillum frisingense GSF30] gi|300072265|gb|ADJ61664.1| 30S ribosomal subunit S11 protein [Herbaspirillum seropedicae SmR1] gi|386432047|gb|EIJ44875.1| 30S ribosomal protein S11 [Herbaspirillum sp. GW103] gi|407758751|gb|EKF68535.1| 30S ribosomal protein S11 [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/134 (80%), Positives = 121/134 (90%), Gaps = 1/134 (0%)

Query: 1   MAKVLNNTNA-RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGS 59
           MAK  NN  A R+RKK+KK++ EG+AH+HASFNNTIITITDR+G  LSWA+SG   FKGS
Sbjct: 1   MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60

Query: 60  RKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTP 119
           RKSTPFAAQVAAESAGK+AIE GIKNLEVRIKGPGPGRES+VRALNNLGIKITQI+DVTP
Sbjct: 61  RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120

Query: 120 IPHNGCRPSKRRRV 133
           +PHNGCRP KRRR+
Sbjct: 121 VPHNGCRPPKRRRI 134

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|398833117|ref|ZP_10591257.1| 30S ribosomal protein S11 [Herbaspirillum sp. YR522] gi|398222103|gb|EJN08491.1| 30S ribosomal protein S11 [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|238025956|ref|YP_002910187.1| 30S ribosomal protein S11 [Burkholderia glumae BGR1] gi|237875150|gb|ACR27483.1| 30S ribosomal protein S11 [Burkholderia glumae BGR1] Back     alignment and taxonomy information
>gi|332286120|ref|YP_004418031.1| 30S ribosomal protein S11 [Pusillimonas sp. T7-7] gi|330430073|gb|AEC21407.1| 30S ribosomal protein S11 [Pusillimonas sp. T7-7] Back     alignment and taxonomy information
>gi|167564392|ref|ZP_02357308.1| ribosomal protein S11 [Burkholderia oklahomensis EO147] gi|167571539|ref|ZP_02364413.1| ribosomal protein S11 [Burkholderia oklahomensis C6786] Back     alignment and taxonomy information
>gi|53720797|ref|YP_109783.1| 30S ribosomal protein S11 [Burkholderia pseudomallei K96243] gi|53723830|ref|YP_104142.1| 30S ribosomal protein S11 [Burkholderia mallei ATCC 23344] gi|76809500|ref|YP_335116.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1710b] gi|78064948|ref|YP_367717.1| 30S ribosomal protein S11 [Burkholderia sp. 383] gi|83719823|ref|YP_443548.1| 30S ribosomal protein S11 [Burkholderia thailandensis E264] gi|107024279|ref|YP_622606.1| 30S ribosomal protein S11 [Burkholderia cenocepacia AU 1054] gi|115350346|ref|YP_772185.1| 30S ribosomal protein S11 [Burkholderia ambifaria AMMD] gi|116688396|ref|YP_834019.1| 30S ribosomal protein S11 [Burkholderia cenocepacia HI2424] gi|121600264|ref|YP_994432.1| 30S ribosomal protein S11 [Burkholderia mallei SAVP1] gi|124383942|ref|YP_001027919.1| 30S ribosomal protein S11 [Burkholderia mallei NCTC 10229] gi|126438369|ref|YP_001060726.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 668] gi|126449962|ref|YP_001083014.1| 30S ribosomal protein S11 [Burkholderia mallei NCTC 10247] gi|126455195|ref|YP_001068010.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1106a] gi|134283319|ref|ZP_01770020.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 305] gi|134294467|ref|YP_001118202.1| 30S ribosomal protein S11 [Burkholderia vietnamiensis G4] gi|161523453|ref|YP_001578465.1| 30S ribosomal protein S11 [Burkholderia multivorans ATCC 17616] gi|167001675|ref|ZP_02267467.1| 30S ribosomal protein S11 [Burkholderia mallei PRL-20] gi|167582599|ref|ZP_02375473.1| ribosomal protein S11 [Burkholderia thailandensis TXDOH] gi|167620713|ref|ZP_02389344.1| ribosomal protein S11 [Burkholderia thailandensis Bt4] gi|167721553|ref|ZP_02404789.1| ribosomal protein S11 [Burkholderia pseudomallei DM98] gi|167740527|ref|ZP_02413301.1| ribosomal protein S11 [Burkholderia pseudomallei 14] gi|167817732|ref|ZP_02449412.1| ribosomal protein S11 [Burkholderia pseudomallei 91] gi|167826129|ref|ZP_02457600.1| ribosomal protein S11 [Burkholderia pseudomallei 9] gi|167838188|ref|ZP_02465047.1| ribosomal protein S11 [Burkholderia thailandensis MSMB43] gi|167847641|ref|ZP_02473149.1| ribosomal protein S11 [Burkholderia pseudomallei B7210] gi|167896213|ref|ZP_02483615.1| ribosomal protein S11 [Burkholderia pseudomallei 7894] gi|167904595|ref|ZP_02491800.1| ribosomal protein S11 [Burkholderia pseudomallei NCTC 13177] gi|167912860|ref|ZP_02499951.1| ribosomal protein S11 [Burkholderia pseudomallei 112] gi|167920819|ref|ZP_02507910.1| ribosomal protein S11 [Burkholderia pseudomallei BCC215] gi|170700718|ref|ZP_02891713.1| ribosomal protein S11 [Burkholderia ambifaria IOP40-10] gi|170731706|ref|YP_001763653.1| 30S ribosomal protein S11 [Burkholderia cenocepacia MC0-3] gi|171318372|ref|ZP_02907530.1| ribosomal protein S11 [Burkholderia ambifaria MEX-5] gi|172059365|ref|YP_001807017.1| 30S ribosomal protein S11 [Burkholderia ambifaria MC40-6] gi|189351774|ref|YP_001947402.1| 30S ribosomal protein S11 [Burkholderia multivorans ATCC 17616] gi|206558665|ref|YP_002229425.1| 30S ribosomal protein S11 [Burkholderia cenocepacia J2315] gi|217424730|ref|ZP_03456227.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 576] gi|221201589|ref|ZP_03574627.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD2M] gi|221207336|ref|ZP_03580346.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD2] gi|221213474|ref|ZP_03586449.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD1] gi|226198281|ref|ZP_03793852.1| 30S ribosomal protein S11 [Burkholderia pseudomallei Pakistan 9] gi|237814121|ref|YP_002898572.1| 30S ribosomal protein S11 [Burkholderia pseudomallei MSHR346] gi|238562960|ref|ZP_00439642.2| 30S ribosomal protein S11 [Burkholderia mallei GB8 horse 4] gi|242317635|ref|ZP_04816651.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1106b] gi|254175001|ref|ZP_04881662.1| 30S ribosomal protein S11 [Burkholderia mallei ATCC 10399] gi|254180363|ref|ZP_04886961.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1655] gi|254190326|ref|ZP_04896834.1| 30S ribosomal protein S11 [Burkholderia pseudomallei Pasteur 52237] gi|254198467|ref|ZP_04904888.1| 30S ribosomal protein S11 [Burkholderia pseudomallei S13] gi|254201215|ref|ZP_04907579.1| 30S ribosomal protein S11 [Burkholderia mallei FMH] gi|254206556|ref|ZP_04912907.1| 30S ribosomal protein S11 [Burkholderia mallei JHU] gi|254246579|ref|ZP_04939900.1| Ribosomal protein S11 [Burkholderia cenocepacia PC184] gi|254253496|ref|ZP_04946814.1| Ribosomal protein S11 [Burkholderia dolosa AUO158] gi|254260898|ref|ZP_04951952.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1710a] gi|254300600|ref|ZP_04968045.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 406e] gi|254357094|ref|ZP_04973368.1| 30S ribosomal protein S11 [Burkholderia mallei 2002721280] gi|257137666|ref|ZP_05585928.1| 30S ribosomal protein S11 [Burkholderia thailandensis E264] gi|386863448|ref|YP_006276397.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1026b] gi|387901054|ref|YP_006331393.1| 30S ribosomal protein S11 [Burkholderia sp. KJ006] gi|402567893|ref|YP_006617238.1| 30S ribosomal protein S11 [Burkholderia cepacia GG4] gi|403520443|ref|YP_006654577.1| 30S ribosomal protein S11 [Burkholderia pseudomallei BPC006] gi|416902467|ref|ZP_11930478.1| 30S ribosomal protein S11 [Burkholderia sp. TJI49] gi|418392855|ref|ZP_12968605.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 354a] gi|418534597|ref|ZP_13100436.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1026a] gi|418542141|ref|ZP_13107595.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1258a] gi|418548666|ref|ZP_13113774.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1258b] gi|418554602|ref|ZP_13119382.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 354e] gi|421479193|ref|ZP_15926908.1| 30S ribosomal protein S11 [Burkholderia multivorans CF2] gi|424907044|ref|ZP_18330535.1| 30S ribosomal protein S11 [Burkholderia thailandensis MSMB43] gi|444357347|ref|ZP_21158890.1| 30S ribosomal protein S11 [Burkholderia cenocepacia BC7] gi|444366801|ref|ZP_21166812.1| 30S ribosomal protein S11 [Burkholderia cenocepacia K56-2Valvano] gi|59798631|sp|Q62GM9.1|RS11_BURMA RecName: Full=30S ribosomal protein S11 gi|59798642|sp|Q63Q35.1|RS11_BURPS RecName: Full=30S ribosomal protein S11 gi|91207733|sp|Q3JMT7.1|RS11_BURP1 RecName: Full=30S ribosomal protein S11 gi|91207734|sp|Q39KE3.1|RS11_BURS3 RecName: Full=30S ribosomal protein S11 gi|122324242|sp|Q0BJ22.1|RS11_BURCM RecName: Full=30S ribosomal protein S11 gi|123244314|sp|Q1BRX2.1|RS11_BURCA RecName: Full=30S ribosomal protein S11 gi|123726557|sp|Q2SU51.1|RS11_BURTA RecName: Full=30S ribosomal protein S11 gi|152060579|sp|A0K3P9.1|RS11_BURCH RecName: Full=30S ribosomal protein S11 gi|152060580|sp|A3P089.1|RS11_BURP0 RecName: Full=30S ribosomal protein S11 gi|166231803|sp|A3MRX8.1|RS11_BURM7 RecName: Full=30S ribosomal protein S11 gi|166231804|sp|A2S7K0.1|RS11_BURM9 RecName: Full=30S ribosomal protein S11 gi|166231805|sp|A1V879.1|RS11_BURMS RecName: Full=30S ribosomal protein S11 gi|166231806|sp|A3NEF5.1|RS11_BURP6 RecName: Full=30S ribosomal protein S11 gi|166231807|sp|A4JAR4.1|RS11_BURVG RecName: Full=30S ribosomal protein S11 gi|226708337|sp|B1YRQ3.1|RS11_BURA4 RecName: Full=30S ribosomal protein S11 gi|226708338|sp|B1JU46.1|RS11_BURCC RecName: Full=30S ribosomal protein S11 gi|226708339|sp|B4E5E4.1|RS11_BURCJ RecName: Full=30S ribosomal protein S11 gi|226708340|sp|A9ADL7.1|RS11_BURM1 RecName: Full=30S ribosomal protein S11 gi|52211211|emb|CAH37200.1| 30S ribosomal protein S11 [Burkholderia pseudomallei K96243] gi|52427253|gb|AAU47846.1| ribosomal protein S11 [Burkholderia mallei ATCC 23344] gi|76578953|gb|ABA48428.1| ribosomal protein S11 [Burkholderia pseudomallei 1710b] gi|77965693|gb|ABB07073.1| SSU ribosomal protein S11P [Burkholderia sp. 383] gi|83653648|gb|ABC37711.1| ribosomal protein S11 [Burkholderia thailandensis E264] gi|105894468|gb|ABF77633.1| SSU ribosomal protein S11P [Burkholderia cenocepacia AU 1054] gi|115280334|gb|ABI85851.1| SSU ribosomal protein S11P [Burkholderia ambifaria AMMD] gi|116646485|gb|ABK07126.1| SSU ribosomal protein S11P [Burkholderia cenocepacia HI2424] gi|121229074|gb|ABM51592.1| 30S ribosomal protein S11 [Burkholderia mallei SAVP1] gi|124291962|gb|ABN01231.1| 30S ribosomal protein S11 [Burkholderia mallei NCTC 10229] gi|124871355|gb|EAY63071.1| Ribosomal protein S11 [Burkholderia cenocepacia PC184] gi|124896105|gb|EAY69985.1| Ribosomal protein S11 [Burkholderia dolosa AUO158] gi|126217862|gb|ABN81368.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 668] gi|126228837|gb|ABN92377.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1106a] gi|126242832|gb|ABO05925.1| 30S ribosomal protein S11 [Burkholderia mallei NCTC 10247] gi|134137624|gb|ABO53367.1| SSU ribosomal protein S11P [Burkholderia vietnamiensis G4] gi|134245514|gb|EBA45607.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 305] gi|147747109|gb|EDK54185.1| 30S ribosomal protein S11 [Burkholderia mallei FMH] gi|147752098|gb|EDK59164.1| 30S ribosomal protein S11 [Burkholderia mallei JHU] gi|148026158|gb|EDK84243.1| 30S ribosomal protein S11 [Burkholderia mallei 2002721280] gi|157810512|gb|EDO87682.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 406e] gi|157938002|gb|EDO93672.1| 30S ribosomal protein S11 [Burkholderia pseudomallei Pasteur 52237] gi|160340882|gb|ABX13968.1| ribosomal protein S11 [Burkholderia multivorans ATCC 17616] gi|160696046|gb|EDP86016.1| 30S ribosomal protein S11 [Burkholderia mallei ATCC 10399] gi|169655207|gb|EDS87900.1| 30S ribosomal protein S11 [Burkholderia pseudomallei S13] gi|169814948|gb|ACA89531.1| ribosomal protein S11 [Burkholderia cenocepacia MC0-3] gi|170134388|gb|EDT02721.1| ribosomal protein S11 [Burkholderia ambifaria IOP40-10] gi|171096450|gb|EDT41349.1| ribosomal protein S11 [Burkholderia ambifaria MEX-5] gi|171991882|gb|ACB62801.1| ribosomal protein S11 [Burkholderia ambifaria MC40-6] gi|184210902|gb|EDU07945.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1655] gi|189335796|dbj|BAG44866.1| small subunit ribosomal protein S11 [Burkholderia multivorans ATCC 17616] gi|198034702|emb|CAR50569.1| 30S ribosomal protein S11 [Burkholderia cenocepacia J2315] gi|217392186|gb|EEC32211.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 576] gi|221166926|gb|EED99397.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD1] gi|221172924|gb|EEE05361.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD2] gi|221178405|gb|EEE10814.1| 30S ribosomal protein S11 [Burkholderia multivorans CGD2M] gi|225929801|gb|EEH25817.1| 30S ribosomal protein S11 [Burkholderia pseudomallei Pakistan 9] gi|237506148|gb|ACQ98466.1| 30S ribosomal protein S11 [Burkholderia pseudomallei MSHR346] gi|238521644|gb|EEP85094.1| 30S ribosomal protein S11 [Burkholderia mallei GB8 horse 4] gi|242140874|gb|EES27276.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1106b] gi|243062572|gb|EES44758.1| 30S ribosomal protein S11 [Burkholderia mallei PRL-20] gi|254219587|gb|EET08971.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1710a] gi|325529702|gb|EGD06565.1| 30S ribosomal protein S11 [Burkholderia sp. TJI49] gi|385356320|gb|EIF62437.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1258a] gi|385357628|gb|EIF63674.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1258b] gi|385358966|gb|EIF64946.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1026a] gi|385370078|gb|EIF75351.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 354e] gi|385374933|gb|EIF79736.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 354a] gi|385660576|gb|AFI67999.1| 30S ribosomal protein S11 [Burkholderia pseudomallei 1026b] gi|387575946|gb|AFJ84662.1| SSU ribosomal protein S11p (S14e) [Burkholderia sp. KJ006] gi|390927401|gb|EIP84810.1| 30S ribosomal protein S11 [Burkholderia thailandensis MSMB43] gi|400223474|gb|EJO53771.1| 30S ribosomal protein S11 [Burkholderia multivorans CF2] gi|402249090|gb|AFQ49544.1| 30S ribosomal protein S11 [Burkholderia cepacia GG4] gi|403076085|gb|AFR17665.1| 30S ribosomal protein S11 [Burkholderia pseudomallei BPC006] gi|443603961|gb|ELT71934.1| 30S ribosomal protein S11 [Burkholderia cenocepacia K56-2Valvano] gi|443606456|gb|ELT74236.1| 30S ribosomal protein S11 [Burkholderia cenocepacia BC7] Back     alignment and taxonomy information
>gi|83748173|ref|ZP_00945200.1| SSU ribosomal protein S11P [Ralstonia solanacearum UW551] gi|187930340|ref|YP_001900827.1| 30S ribosomal protein S11 [Ralstonia pickettii 12J] gi|207744552|ref|YP_002260944.1| 30s ribosomal protein s11 [Ralstonia solanacearum IPO1609] gi|241664508|ref|YP_002982868.1| 30S ribosomal protein S11 [Ralstonia pickettii 12D] gi|300690184|ref|YP_003751179.1| 30S ribosomal subunit protein S11 [Ralstonia solanacearum PSI07] gi|300702804|ref|YP_003744405.1| 30S ribosomal protein S11 [Ralstonia solanacearum CFBP2957] gi|309782858|ref|ZP_07677578.1| 30S ribosomal protein S11 [Ralstonia sp. 5_7_47FAA] gi|386332171|ref|YP_006028340.1| 30S ribosomal protein S11 [Ralstonia solanacearum Po82] gi|404397554|ref|ZP_10989344.1| 30S ribosomal protein S11 [Ralstonia sp. 5_2_56FAA] gi|421895876|ref|ZP_16326275.1| 30s ribosomal protein s11 [Ralstonia solanacearum MolK2] gi|226708405|sp|B2UEJ5.1|RS11_RALPJ RecName: Full=30S ribosomal protein S11 gi|83725141|gb|EAP72292.1| SSU ribosomal protein S11P [Ralstonia solanacearum UW551] gi|187727230|gb|ACD28395.1| ribosomal protein S11 [Ralstonia pickettii 12J] gi|206587041|emb|CAQ17625.1| 30s ribosomal protein s11 [Ralstonia solanacearum MolK2] gi|206595958|emb|CAQ62885.1| 30s ribosomal protein s11 [Ralstonia solanacearum IPO1609] gi|240866535|gb|ACS64196.1| ribosomal protein S11 [Ralstonia pickettii 12D] gi|299065439|emb|CBJ36608.1| 30S ribosomal subunit protein S11 [Ralstonia solanacearum CMR15] gi|299070466|emb|CBJ41761.1| 30S ribosomal subunit protein S11 [Ralstonia solanacearum CFBP2957] gi|299077244|emb|CBJ49870.1| 30S ribosomal subunit protein S11 [Ralstonia solanacearum PSI07] gi|308918282|gb|EFP63959.1| 30S ribosomal protein S11 [Ralstonia sp. 5_7_47FAA] gi|334194619|gb|AEG67804.1| 30S ribosomal protein S11 [Ralstonia solanacearum Po82] gi|344168990|emb|CCA81311.1| 30S ribosomal subunit protein S11 [blood disease bacterium R229] gi|344172707|emb|CCA85361.1| 30S ribosomal subunit protein S11 [Ralstonia syzygii R24] gi|348612675|gb|EGY62289.1| 30S ribosomal protein S11 [Ralstonia sp. 5_2_56FAA] Back     alignment and taxonomy information
>gi|17547714|ref|NP_521116.1| 30S ribosomal protein S11 [Ralstonia solanacearum GMI1000] gi|48474566|sp|Q8XV36.1|RS11_RALSO RecName: Full=30S ribosomal protein S11 gi|17430019|emb|CAD16704.1| probable 30s ribosomal protein s11 [Ralstonia solanacearum GMI1000] Back     alignment and taxonomy information
>gi|167587748|ref|ZP_02380136.1| ribosomal protein S11 [Burkholderia ubonensis Bu] Back     alignment and taxonomy information
>gi|91785441|ref|YP_560647.1| 30S ribosomal protein S11 [Burkholderia xenovorans LB400] gi|170695705|ref|ZP_02886847.1| ribosomal protein S11 [Burkholderia graminis C4D1M] gi|186477563|ref|YP_001859033.1| 30S ribosomal protein S11 [Burkholderia phymatum STM815] gi|187925592|ref|YP_001897234.1| 30S ribosomal protein S11 [Burkholderia phytofirmans PsJN] gi|209521362|ref|ZP_03270075.1| ribosomal protein S11 [Burkholderia sp. H160] gi|295677908|ref|YP_003606432.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] gi|307731231|ref|YP_003908455.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] gi|323527578|ref|YP_004229731.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] gi|377821867|ref|YP_004978238.1| 30S ribosomal protein S11 [Burkholderia sp. YI23] gi|385207770|ref|ZP_10034638.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] gi|390576173|ref|ZP_10256246.1| 30S ribosomal protein S11 [Burkholderia terrae BS001] gi|407714965|ref|YP_006835530.1| 30S ribosomal protein S11 [Burkholderia phenoliruptrix BR3459a] gi|413959405|ref|ZP_11398641.1| 30S ribosomal protein S11 [Burkholderia sp. SJ98] gi|420246436|ref|ZP_14749878.1| 30S ribosomal protein S11 [Burkholderia sp. BT03] gi|123167990|sp|Q13TJ4.1|RS11_BURXL RecName: Full=30S ribosomal protein S11 gi|91689395|gb|ABE32595.1| SSU ribosomal protein S11P [Burkholderia xenovorans LB400] gi|170139310|gb|EDT07496.1| ribosomal protein S11 [Burkholderia graminis C4D1M] gi|184194022|gb|ACC71987.1| ribosomal protein S11 [Burkholderia phymatum STM815] gi|187716786|gb|ACD18010.1| ribosomal protein S11 [Burkholderia phytofirmans PsJN] gi|209498182|gb|EDZ98324.1| ribosomal protein S11 [Burkholderia sp. H160] gi|295437751|gb|ADG16921.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] gi|307585766|gb|ADN59164.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] gi|323384580|gb|ADX56671.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] gi|357936702|gb|AET90261.1| 30S ribosomal protein S11 [Burkholderia sp. YI23] gi|385180108|gb|EIF29384.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] gi|389931854|gb|EIM93909.1| 30S ribosomal protein S11 [Burkholderia terrae BS001] gi|398074539|gb|EJL65680.1| 30S ribosomal protein S11 [Burkholderia sp. BT03] gi|407237149|gb|AFT87348.1| small subunit ribosomal protein S11 [Burkholderia phenoliruptrix BR3459a] gi|413940362|gb|EKS72325.1| 30S ribosomal protein S11 [Burkholderia sp. SJ98] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query133
TIGR_CMR|CPS_0624129 CPS_0624 "ribosomal protein S1 0.947 0.976 0.682 5.6e-45
TIGR_CMR|SO_0254130 SO_0254 "ribosomal protein S11 0.977 1.0 0.676 7.1e-45
UNIPROTKB|P66367129 rpsK "30S ribosomal protein S1 0.924 0.953 0.682 8.1e-44
TIGR_CMR|VC_2573129 VC_2573 "ribosomal protein S11 0.924 0.953 0.682 8.1e-44
UNIPROTKB|P0A7R9129 rpsK [Escherichia coli K-12 (t 0.924 0.953 0.682 1.3e-43
TIGR_CMR|BA_0136129 BA_0136 "ribosomal protein S11 0.939 0.968 0.634 6.6e-42
TIGR_CMR|CHY_2283129 CHY_2283 "ribosomal protein S1 0.924 0.953 0.634 1.6e-40
TIGR_CMR|GSU_2833131 GSU_2833 "ribosomal protein S1 0.909 0.923 0.644 5.5e-38
TIGR_CMR|SPO_0510130 SPO_0510 "ribosomal protein S1 0.909 0.930 0.611 2.4e-37
UNIPROTKB|O06326139 rpsK "30S ribosomal protein S1 0.924 0.884 0.569 7.2e-36
TIGR_CMR|CPS_0624 CPS_0624 "ribosomal protein S11" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 86/126 (68%), Positives = 105/126 (83%)

Query:     8 TNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAA 67
             T  R RK++KK + +G+AHIHASFNNTI+T+TDR+G  LSWA++G   F+GSRKSTPFAA
Sbjct:     4 TPVRTRKRVKKQVADGMAHIHASFNNTIVTLTDRQGNALSWATAGGSGFRGSRKSTPFAA 63

Query:    68 QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRP 127
             QVAA+ AG +A E G+KN+EV +KGPGPGRES++RALN  G KIT I DVTPIPHNGCRP
Sbjct:    64 QVAADRAGAVAKEFGLKNIEVFVKGPGPGRESAIRALNAAGFKITNITDVTPIPHNGCRP 123

Query:   128 SKRRRV 133
              K+RRV
Sbjct:   124 PKKRRV 129
GO:0003735 "structural constituent of ribosome" evidence=ISS
GO:0015935 "small ribosomal subunit" evidence=ISS
GO:0042254 "ribosome biogenesis" evidence=ISS
TIGR_CMR|SO_0254 SO_0254 "ribosomal protein S11" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P66367 rpsK "30S ribosomal protein S11" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2573 VC_2573 "ribosomal protein S11" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A7R9 rpsK [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0136 BA_0136 "ribosomal protein S11" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2283 CHY_2283 "ribosomal protein S11" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2833 GSU_2833 "ribosomal protein S11" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0510 SPO_0510 "ribosomal protein S11" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|O06326 rpsK "30S ribosomal protein S11" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B2UEJ5RS11_RALPJNo assigned EC number0.75181.01.0yesN/A
B1JU46RS11_BURCCNo assigned EC number0.75181.01.0yesN/A
Q46WG7RS11_CUPPJNo assigned EC number0.75930.99241.0yesN/A
A3P089RS11_BURP0No assigned EC number0.75181.01.0yesN/A
Q12G79RS11_POLSJNo assigned EC number0.73430.96240.9552yesN/A
A9IHR9RS11_BORPDNo assigned EC number0.72931.01.0yesN/A
B4E5E4RS11_BURCJNo assigned EC number0.75181.01.0yesN/A
Q7NQH5RS11_CHRVONo assigned EC number0.73680.98491.0yesN/A
Q0AIH3RS11_NITECNo assigned EC number0.76030.90970.9379yesN/A
Q39KE3RS11_BURS3No assigned EC number0.75181.01.0yesN/A
B1YRQ3RS11_BURA4No assigned EC number0.75181.01.0yesN/A
A1W331RS11_ACISJNo assigned EC number0.73881.00.9925yesN/A
Q0VSI0RS11_ALCBSNo assigned EC number0.70670.99241.0yesN/A
A3NEF5RS11_BURP6No assigned EC number0.75181.01.0yesN/A
A4SUY4RS11_POLSQNo assigned EC number0.74071.00.9851yesN/A
Q62GM9RS11_BURMANo assigned EC number0.75181.01.0yesN/A
Q7VTA7RS11_BORPENo assigned EC number0.72931.01.0yesN/A
B3R7E5RS11_CUPTRNo assigned EC number0.75930.99241.0yesN/A
Q0BJ22RS11_BURCMNo assigned EC number0.75181.01.0yesN/A
C5CQ77RS11_VARPSNo assigned EC number0.71641.00.9925yesN/A
Q1BRX2RS11_BURCANo assigned EC number0.75181.01.0yesN/A
Q2SU51RS11_BURTANo assigned EC number0.75181.01.0yesN/A
A3MRX8RS11_BURM7No assigned EC number0.75181.01.0yesN/A
A2S7K0RS11_BURM9No assigned EC number0.75181.01.0yesN/A
A6T3I0RS11_JANMANo assigned EC number0.82110.92480.9179yesN/A
Q3SLM6RS11_THIDANo assigned EC number0.76980.94730.9692yesN/A
B1Y8B3RS11_LEPCPNo assigned EC number0.73131.00.9925yesN/A
Q2L245RS11_BORA1No assigned EC number0.72931.01.0yesN/A
Q82X71RS11_NITEUNo assigned EC number0.75600.92480.9534yesN/A
A0K3P9RS11_BURCHNo assigned EC number0.75181.01.0yesN/A
A4JAR4RS11_BURVGNo assigned EC number0.75181.01.0yesN/A
A1WK94RS11_VEREINo assigned EC number0.71641.00.9925yesN/A
B9MBW0RS11_ACIETNo assigned EC number0.73881.00.9925yesN/A
Q0K643RS11_CUPNHNo assigned EC number0.75930.99241.0yesN/A
A4G9R5RS11_HERARNo assigned EC number0.83730.92480.9179yesN/A
A1TJU0RS11_ACIACNo assigned EC number0.73131.00.9925yesN/A
A1V879RS11_BURMSNo assigned EC number0.75181.01.0yesN/A
Q63Q35RS11_BURPSNo assigned EC number0.75181.01.0yesN/A
Q2YAX4RS11_NITMUNo assigned EC number0.74790.92480.9534yesN/A
Q1LI61RS11_RALMENo assigned EC number0.74431.01.0yesN/A
Q7WR99RS11_BORBRNo assigned EC number0.72931.01.0yesN/A
Q7W2D1RS11_BORPANo assigned EC number0.72931.01.0yesN/A
Q13TJ4RS11_BURXLNo assigned EC number0.75371.00.9925yesN/A
A9ADL7RS11_BURM1No assigned EC number0.75181.01.0yesN/A
Q3JMT7RS11_BURP1No assigned EC number0.75181.01.0yesN/A
A1VJ38RS11_POLNANo assigned EC number0.73131.00.9925yesN/A
A9BRX3RS11_DELASNo assigned EC number0.73881.00.9925yesN/A
Q8XV36RS11_RALSONo assigned EC number0.75181.01.0yesN/A
Q21QP7RS11_RHOFDNo assigned EC number0.70891.00.9925yesN/A
A2SLD3RS11_METPPNo assigned EC number0.72181.01.0yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
PRK05309128 PRK05309, PRK05309, 30S ribosomal protein S11; Val 4e-79
COG0100129 COG0100, RpsK, Ribosomal protein S11 [Translation, 7e-65
TIGR03632108 TIGR03632, bact_S11, 30S ribosomal protein S11 2e-63
pfam00411109 pfam00411, Ribosomal_S11, Ribosomal protein S11 2e-54
CHL00041116 CHL00041, rps11, ribosomal protein S11 6e-53
PRK09607132 PRK09607, rps11p, 30S ribosomal protein S11P; Revi 1e-33
TIGR03628114 TIGR03628, arch_S11P, archaeal ribosomal protein S 6e-29
PTZ00129149 PTZ00129, PTZ00129, 40S ribosomal protein S14; Pro 4e-21
>gnl|CDD|180007 PRK05309, PRK05309, 30S ribosomal protein S11; Validated Back     alignment and domain information 
 Score =  228 bits (585), Expect = 4e-79
 Identities = 84/126 (66%), Positives = 104/126 (82%)

Query: 8   TNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAA 67
               ++KK+KK+I  GVAHIHA+FNNTI+TITDR+G  +SWAS+G + FKGSRKSTP+AA
Sbjct: 3   KKKTVKKKVKKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAA 62

Query: 68  QVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRP 127
           QVAAE A K A EHG+K +EV +KGPG GRES++RAL   G+++T I+DVTPIPHNGCRP
Sbjct: 63  QVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPHNGCRP 122

Query: 128 SKRRRV 133
            KRRRV
Sbjct: 123 PKRRRV 128

Length = 128
>gnl|CDD|223178 COG0100, RpsK, Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|188357 TIGR03632, bact_S11, 30S ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|189537 pfam00411, Ribosomal_S11, Ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|176982 CHL00041, rps11, ribosomal protein S11 Back     alignment and domain information
>gnl|CDD|236588 PRK09607, rps11p, 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>gnl|CDD|132667 TIGR03628, arch_S11P, archaeal ribosomal protein S11P Back     alignment and domain information
>gnl|CDD|185465 PTZ00129, PTZ00129, 40S ribosomal protein S14; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 133
PRK05309128 30S ribosomal protein S11; Validated 100.0
COG0100129 RpsK Ribosomal protein S11 [Translation, ribosomal 100.0
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 100.0
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 100.0
PTZ00129149 40S ribosomal protein S14; Provisional 100.0
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 100.0
CHL00041116 rps11 ribosomal protein S11 100.0
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 100.0
PTZ00090233 40S ribosomal protein S11; Provisional 100.0
KOG0408|consensus190 100.0
KOG0407|consensus139 99.95
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 98.25
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 97.82
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 97.8
CHL00139109 rpl18 ribosomal protein L18; Validated 97.79
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 97.72
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 97.63
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 96.6
PTZ00032211 60S ribosomal protein L18; Provisional 96.11
PTZ00069 300 60S ribosomal protein L5; Provisional 88.99
cd05313 254 NAD_bind_2_Glu_DH NAD(P) binding domain of glutama 85.77
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.2e-51  Score=301.73  Aligned_cols=117  Identities=70%  Similarity=1.125  Sum_probs=114.5

Q ss_pred             cceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCC
Q psy8857          17 KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPG   96 (133)
Q Consensus        17 ~~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~G   96 (133)
                      ++++..|++||++|+||||||+||++|++++|+|||++||||++|+|||||+++++.+++++.++|++.|+|+|+|+|+|
T Consensus        12 ~~~~~~gi~hI~~t~NNTiitlTd~~G~~~~~~S~G~~gfKg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~G   91 (128)
T PRK05309         12 KKNIPSGVAHIHATFNNTIVTITDRQGNVISWASAGGLGFKGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSG   91 (128)
T ss_pred             ccccceeEEEEEccCCCEEEEEEcCCCCEEEEEecCccEeCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCc
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857          97 RESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV  133 (133)
Q Consensus        97 r~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv  133 (133)
                      |+++|++|..+|++|.+|+|+||+|||||||||+|||
T Consensus        92 r~~air~L~~~glkI~~I~D~TpiphNGcR~~K~RRv  128 (128)
T PRK05309         92 RESAIRALQAAGLEVTSIKDVTPIPHNGCRPPKRRRV  128 (128)
T ss_pred             HHHHHHHHHHCCCEEEEEEEcCCCCCCCcCcCCCCCC
Confidence            9999999999999999999999999999999999997

>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>KOG0408|consensus Back     alignment and domain information
>KOG0407|consensus Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
1vs5_K129 Crystal Structure Of The Bacterial Ribosome From Es 2e-47
1p6g_K128 Real Space Refined Coordinates Of The 30s Subunit F 2e-47
3fih_K117 Ternary Complex-Bound E.Coli 70s Ribosome. This Ent 3e-45
2gy9_K116 Structure Of The 30s Subunit Of A Pre-Translocation 1e-44
3bbn_K140 Homology Model For The Spinach Chloroplast 30s Subu 4e-34
1pns_K119 Crystal Structure Of A Streptomycin Dependent Ribos 3e-27
1fjg_K129 Structure Of The Thermus Thermophilus 30s Ribosomal 6e-27
1i94_K128 Crystal Structures Of The Small Ribosomal Subunit W 7e-27
3j20_M137 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-17
2zkq_k151 Structure Of A Mammalian Ribosomal 40s Subunit With 1e-16
3iz6_K150 Localization Of The Small Subunit Ribosomal Protein 2e-16
3jyv_K125 Structure Of The 40s Rrna And Proteins And PE TRNA 6e-16
3izb_K137 Localization Of The Small Subunit Ribosomal Protein 3e-15
1s1h_K136 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 4e-15
3zey_H144 High-resolution Cryo-electron Microscopy Structure 3e-14
2xzm_K151 Crystal Structure Of The Eukaryotic 40s Ribosomal S 1e-12
3j0l_K140 Core Of Mammalian 80s Pre-Ribosome In Complex With 2e-12
>pdb|1VS5|K Chain K, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 129 Back     alignment and structure 
Iteration: 1

 Score =  183 bits (465), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 101/123 (82%)
Query: 11  RIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVA 70
           R RK+++K +++GVAHIHASFNNTI+TITDR+G  L WA++G   F+GSRKSTPFAAQVA
Sbjct: 7   RARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVA 66
Query: 71  AESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKR 130
           AE       E+GIKNLEV +KGPGPGRES++RALN  G +IT I DVTPIPHNGCRP K+
Sbjct: 67  AERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKK 126
Query: 131 RRV 133
           RRV
Sbjct: 127 RRV 129
>pdb|1P6G|K Chain K, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 128 Back     alignment and structure
>pdb|3FIH|K Chain K, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 117 Back     alignment and structure
>pdb|2GY9|K Chain K, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 116 Back     alignment and structure
>pdb|3BBN|K Chain K, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 140 Back     alignment and structure
>pdb|1PNS|K Chain K, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 119 Back     alignment and structure
>pdb|1FJG|K Chain K, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 129 Back     alignment and structure
>pdb|1I94|K Chain K, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 128 Back     alignment and structure
>pdb|3J20|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 137 Back     alignment and structure
>pdb|2ZKQ|KK Chain k, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 151 Back     alignment and structure
>pdb|3IZ6|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 150 Back     alignment and structure
>pdb|3JYV|K Chain K, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 125 Back     alignment and structure
>pdb|3IZB|K Chain K, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 137 Back     alignment and structure
>pdb|1S1H|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 136 Back     alignment and structure
>pdb|3ZEY|H Chain H, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 144 Back     alignment and structure
>pdb|2XZM|K Chain K, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 151 Back     alignment and structure
>pdb|3J0L|K Chain K, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query133
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 5e-72
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 7e-72
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 1e-69
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 8e-65
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 5e-56
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 140 Back     alignment and structure
 Score =  211 bits (538), Expect = 5e-72
 Identities = 62/133 (46%), Positives = 93/133 (69%)

Query: 1   MAKVLNNTNARIRKKIKKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSR 60
           +    N   +  +    + I +GV H+ ASFNNTI+T+TD +G  +SWAS+G+  F+G++
Sbjct: 8   IGSRRNGRISSRKSASARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCGFRGTK 67

Query: 61  KSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPI 120
           + TPFAAQ AA +A +  +E G++  EV IKGPG GR++++RA+   GI ++ + DVTP+
Sbjct: 68  RGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVRDVTPM 127

Query: 121 PHNGCRPSKRRRV 133
           PHNGCRP K+RRV
Sbjct: 128 PHNGCRPPKKRRV 140
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Length = 129 Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Length = 137 Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Length = 151 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 100.0
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 100.0
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 100.0
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 100.0
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 100.0
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 100.0
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 97.69
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 97.62
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 97.49
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 97.22
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 97.17
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 96.84
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 96.63
2zkr_n 297 60S ribosomal protein L5; protein-RNA complex, 60S 96.07
4a17_M 301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 94.69
3u5e_D 297 60S ribosomal protein L5; translation, ribosome, r 94.56
3iz5_Q 304 60S ribosomal protein L5 (L18P); eukaryotic riboso 84.32
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 133
d2qalk1117 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escheri 4e-51
d2uubk1119 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus 9e-48
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (395), Expect = 4e-51
 Identities = 81/117 (69%), Positives = 96/117 (82%)

Query: 17  KKHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGK 76
           +K +++GVAHIHASFNNTI+TITDR+G  L WA++G   F+GSRKSTPFAAQVAAE    
Sbjct: 1   RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCAD 60

Query: 77  IAIEHGIKNLEVRIKGPGPGRESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV 133
              E+GIKNLEV +KGPGPGRES++RALN  G +IT I DVTPIPHNGCRP K+RRV
Sbjct: 61  AVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV 117
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query133
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 100.0
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 100.0
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 97.72
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 97.53
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 97.04
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 96.28
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 93.97
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein S11
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-53  Score=304.17  Aligned_cols=116  Identities=70%  Similarity=1.137  Sum_probs=114.0

Q ss_pred             ceeeeeEEEEEcccCCeEEEEEcCCCCeEEeeecceeeecCCCCCCHHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCCh
Q psy8857          18 KHITEGVAHIHASFNNTIITITDRKGCTLSWASSGSVNFKGSRKSTPFAAQVAAESAGKIAIEHGIKNLEVRIKGPGPGR   97 (133)
Q Consensus        18 ~~~~~~il~I~~t~NNTiitlTd~~G~~l~~~S~G~~gfKg~kk~t~~Aa~~aa~~~~~~~~~~gi~~v~v~~kG~G~Gr   97 (133)
                      +++..|++||++|+|||||||||++|++++|+|+|++||||++|+|||||+++++.++++++++|++.|+|+|+|+|+||
T Consensus         2 ~~~~~Gi~hI~~t~NNTiitlTD~~G~~~~~~S~G~~gfkg~~K~t~~Aa~~~a~~~~~~~~~~gi~~v~V~~kG~G~GR   81 (117)
T d2qalk1           2 KQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGR   81 (117)
T ss_dssp             CCCCEEEEEEECCSSCCEEEEEETTSCEEEEEETTTSSCCHHHHTSHHHHHHHHHHHHHHHGGGTCCEEEEEEECCSTTT
T ss_pred             ccccceEEEEEecCCCEEEEEECCCCCEEEEEeccccccccccccchHHHHHHHHHHHHHHHHcCCcEEEEEEeCCCCch
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCceEEEEEecCCCCCCCCCCCCCCCC
Q psy8857          98 ESSVRALNNLGIKITQIEDVTPIPHNGCRPSKRRRV  133 (133)
Q Consensus        98 ~~~lk~L~~~gl~I~~I~D~TpiphnGcR~kK~RRv  133 (133)
                      ++++++|..+|++|.+|+|+||+|||||||||+|||
T Consensus        82 ~~air~l~~~gl~I~~I~D~TpiphnGcRp~K~RRv  117 (117)
T d2qalk1          82 ESTIRALNAAGFRITNITDVTPIPHNGCRPPKKRRV  117 (117)
T ss_dssp             THHHHHHHHTTCEEEEEEECCCCCSSCSCCCCCCCC
T ss_pred             HHHHHHHHhCCCEEEEEEECCCCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999997
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure