Psyllid ID: psy8875

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730----
Protein Sequence
MTSKCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSPGTNEYV
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccccccccEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEcccccEEcccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEcccEEEEccccccEEEEccccccEEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEccccccccEEEEcccccEEEccccccEEEEEEcccccEEEEEccccccccEEEEcccccEEEEEcccccccEEEEEccccccEEEEEccccccEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEccEEEEEEcccccEEEEccccccccEEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccccccccccEEEEcccccccccccccccccccccccccccEEcccccEccccEEEcccccccccccccccccccccccccEcccccccEccccEEEcccccccccccccccccccccccccEcccccEccccEEccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccEccccccccccEEEccccccccccccccccccccccccEcccccEccccEEccccccccccccccccccccccccccEccccccEccccEEEcccccccccccccccccccccccccccccccccccccEEccccEEccccccccccccccccccccccccccccccccccccccccEEEEcccccEEcccccccccccccccccccccccccccccEEEEcccccEEcccccccccccccccEEEEEccccEEEEccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEEcccccccEEEEccccccEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEccccccEEEEEEEccccEEEEEEcccccHEEEEcccccccEEEEEccccccccEEEEccccEEEEEEccccEEEEEEccccccEEEEEccccccccEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MTSKCYIGLYIGVLVVIRSVDALYRLERSViddkigvdydtftsptvywrskpcrnstmfrctggmcipstwvcdgqndcpdgvdekkcqkricgqeeftcrsspgecvpltwmcddnpdcsdgsdekscknrtcqasefrcgnnrcipnhwqcdgefdcsdksdedpemcngvnhcaavnghcshlclpapqinahspkiscacpeglklLPDLLMcaeagskpcrnstmfrctggmcipstwvcdgqndcpdgvdekkchetcrsdeftcangnciqriwlcdgdddckdgsdekscqpvkctagqftcqnltacipdkwvcdgdtvekdstcpnatpmnssvriegavafippgFAMAMKIVRTAVcdkhpdcplmqdedptkcgvdecakdnggclhkcvdlpvgymcecnegyklssnrhtcididecetpgscsqiclnekggfkcecvagyikdphhptqckaaEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGmifwsdisekkiykapidegsertvvieedktiadGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSyldeprslalnpidgwmywsdwgqnakieragmdgshrnmvivsdikwpngltldLVQRRLYWVDAKLNEISscdynggnrrlvlyspqtlshpfsistfedwlyWSDWQQKAIYKAnkftgdnltaitgvhqtheplnspgtneyv
Flexible Loop (DISEMBL)
MTSKCYIGLYIGVLVVIRSVDALYRLErsviddkigvdydtftsptvywrskpcrNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGqeeftcrsspgecVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTcpnatpmnssvrIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAivnstksataiDFVFRTGMIFWSDISEKKIykapidegsertvvieedktiadGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITgvhqtheplnspgtneyv
Low Complexity Region (SEG)
MTSKCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLcdgdddckdgsdeksCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSPGTNEYV
Disordered region (IsUnstruct)
***KCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD*****************CQASEFRCGNNRCIPNHWQCDGEFDC*********MCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCK******SCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEK************SVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH***************
Disordered Region (DISOPRED)
**S*CYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQT*************
Disordered Region (DISEMBL)
MTSKCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPD***************QASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDD**********QPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSPGTNEYV
Disordered Region (DISPRO)
***KCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSKCYIGLYIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSPGTNEYV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	734	2.2.26 [Sep-21-2011]
P98166	873	Very low-density lipoprot	yes	N/A	0.862	0.725	0.419	1e-140
P98156	873	Very low-density lipoprot	yes	N/A	0.882	0.742	0.410	1e-140
P98155	873	Very low-density lipoprot	yes	N/A	0.859	0.722	0.416	1e-139
P35953	873	Very low-density lipoprot	yes	N/A	0.878	0.738	0.410	1e-138
P98165	863	Very low-density lipoprot	yes	N/A	0.882	0.750	0.414	1e-137
Q98931	917	Low-density lipoprotein r	no	N/A	0.867	0.694	0.391	1e-133
P20063	837	Low-density lipoprotein r	no	N/A	0.811	0.712	0.392	1e-131
Q924X6	996	Low-density lipoprotein r	no	N/A	0.865	0.637	0.383	1e-131
Q99087	909	Low-density lipoprotein r	N/A	N/A	0.805	0.650	0.385	1e-130
P35951	862	Low-density lipoprotein r	no	N/A	0.806	0.686	0.378	1e-129

>sp|P98166|VLDLR_RAT Very low-density lipoprotein receptor OS=Rattus norvegicus GN=Vldlr PE=2 SV=1

 Score =  500 bits (1288), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 284/677 (41%), Positives = 385/677 (56%), Gaps = 44/677 (6%)

Query: 56  NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMC 115
           +S+ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C++  G+CVP  W C
Sbjct: 34  DSSQFQCTNGRCITLLWKCDGDEDCTDGSDEKNCVKKTCAESDFVCKN--GQCVPNRWQC 91

Query: 116 DDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           D +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC +  DE  E C
Sbjct: 92  DGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPESWRCDGENDCDNGEDE--ENC 149

Query: 172 NGVNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
             +  C+A    CS   C+        S    C   +      D L CA     P   + 
Sbjct: 150 GNIT-CSADEFTCSSGRCV--------SRNFVCNGQDDCDDGSDELDCA----PPTCGAH 196

Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANGNCIQRIW 282
            F+C    CIP +WVCD   DC D  DE  ++C      H  C + E  C +G CI + W
Sbjct: 197 EFQCRTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGECIHKKW 256

Query: 283 LCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN 342
            CDGD DCKDGSDE +C    C   QF C++  +CI     C+G          +    +
Sbjct: 257 RCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNG--------IRDCVDGS 307

Query: 343 SSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGC 399
             V  +     + PG         I  T VCD+  DC    DE   +C ++EC  +NGGC
Sbjct: 308 DEVNCKNVNQCLGPGKFKCRSGECIDITKVCDQEQDCRDWSDEPLKECHINECLVNNGGC 367

Query: 400 LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYI 459
            H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KCEC  GY 
Sbjct: 368 SHICKDLVIGYECDCAAGFEL-IDRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQ 426

Query: 460 KDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFW 519
            D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+D       +FW
Sbjct: 427 MDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFW 485

Query: 520 SDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579
           +D+S+K I+ A ID+   R   + ++      +AVDW+Y  IYWTDA   TI +A  +GT
Sbjct: 486 ADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGT 545

Query: 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639
            RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++  DI+WPNG+
Sbjct: 546 KRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQWPNGI 605

Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
           TLDLV+ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +YW D + +
Sbjct: 606 TLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENE 665

Query: 700 AIYKANKFTGDNLTAIT 716
           A+Y ANKFTG  L  + 
Sbjct: 666 AVYGANKFTGSELATLV 682

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.
Rattus norvegicus (taxid: 10116)

>sp|P98156|VLDLR_MOUSE Very low-density lipoprotein receptor OS=Mus musculus GN=Vldlr PE=1 SV=1

 Score =  498 bits (1283), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 287/699 (41%), Positives = 392/699 (56%), Gaps = 51/699 (7%)

Query: 56  NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMC 115
           +S+ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C++  G+CVP  W C
Sbjct: 34  DSSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAESDFVCKN--GQCVPNRWQC 91

Query: 116 DDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           D +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC +  DE  E C
Sbjct: 92  DGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGENDCDNGEDE--ENC 149

Query: 172 NGVNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
             +  C+A    CS   C+        S    C   +      D L CA     P   + 
Sbjct: 150 GNIT-CSADEFTCSSGRCV--------SRNFVCNGQDDCDDGSDELDCA----PPTCGAH 196

Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANGNCIQRIW 282
            F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E  C +G CI + W
Sbjct: 197 EFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQCGSGECIHKKW 256

Query: 283 LCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN 342
            CDGD DCKDGSDE +C    C   QF C++  +CI     C+G          +    +
Sbjct: 257 RCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNG--------IRDCVDGS 307

Query: 343 SSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGC 399
             V  +     + PG         I  + VCD+  DC    DE   +C ++EC  +NGGC
Sbjct: 308 DEVNCKNVNQCLGPGKFKCRSGECIDMSKVCDQEQDCRDWSDEPLKECHINECLVNNGGC 367

Query: 400 LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYI 459
            H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KCEC  GY 
Sbjct: 368 SHICKDLVIGYECDCAAGFEL-IDRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQ 426

Query: 460 KDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFW 519
            D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+D       +FW
Sbjct: 427 MDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFW 485

Query: 520 SDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579
           +D+S+K I+ A ID+   R   + ++      +AVDW+Y  IYWTDA   TI +A  +G 
Sbjct: 486 ADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGA 545

Query: 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639
            RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++  DI+WPNG+
Sbjct: 546 KRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQWPNGI 605

Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
           TLDLV+ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +YW D + +
Sbjct: 606 TLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENE 665

Query: 700 AIYKANKFTG-------DNLTAITGVHQTHEPLNSPGTN 731
           A+Y ANKFTG       +NL     +   HE +   G N
Sbjct: 666 AVYGANKFTGSELATLVNNLNDAQDIIVYHELVQPSGKN 704

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Mus musculus (taxid: 10090)

>sp|P98155|VLDLR_HUMAN Very low-density lipoprotein receptor OS=Homo sapiens GN=VLDLR PE=1 SV=1

 Score =  494 bits (1273), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/675 (41%), Positives = 383/675 (56%), Gaps = 44/675 (6%)

Query: 58  TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           + F+CT G CI   W CDG  DC DG DEK C K+ C + +F C +  G+CVP  W CD 
Sbjct: 36  SQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNN--GQCVPSRWKCDG 93

Query: 118 NPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
           +PDC DGSDE  + C  RTC+  E  CG  + +CIP  W+CDGE DC   S ED E C  
Sbjct: 94  DPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCD--SGEDEENCGN 151

Query: 174 VNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
           +  C+     CS   C+        S    C   +      D L CA     P   +  F
Sbjct: 152 IT-CSPDEFTCSSGRCI--------SRNFVCNGQDDCSDGSDELDCA----PPTCGAHEF 198

Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANGNCIQRIWLC 284
           +C+   CIP +WVCD   DC D  DE  ++C      H  C + E  C +G CI + W C
Sbjct: 199 QCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSGECIHKKWRC 258

Query: 285 DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
           DGD DCKDGSDE +C    C   QF C++  +CI     C+G          +    +  
Sbjct: 259 DGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNG--------IRDCVDGSDE 309

Query: 345 VRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLH 401
           V  +     + PG         I  + VC++  DC    DE   +C ++EC  +NGGC H
Sbjct: 310 VNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHINECLVNNGGCSH 369

Query: 402 KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD 461
            C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KCEC  GY  D
Sbjct: 370 ICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMD 428

Query: 462 PHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSD 521
                 CKA     SL+F  + DIRKI L+  E   +V   ++  A+D       +FW+D
Sbjct: 429 LATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAAQKLFWAD 487

Query: 522 ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581
           +S+K I+ A ID+   R V + ++      +AVDW+Y  IYWTDA   TI +A  +GT R
Sbjct: 488 LSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTISVATLDGTKR 547

Query: 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641
           K L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++ +DI+WPNG+TL
Sbjct: 548 KFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTADIQWPNGITL 607

Query: 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
           DL++ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +YW D + +A+
Sbjct: 608 DLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAV 667

Query: 702 YKANKFTGDNLTAIT 716
           Y ANKFTG  L  + 
Sbjct: 668 YGANKFTGSELATLV 682

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Homo sapiens (taxid: 9606)

>sp|P35953|VLDLR_RABIT Very low-density lipoprotein receptor OS=Oryctolagus cuniculus GN=VLDLR PE=2 SV=1

 Score =  494 bits (1272), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 283/690 (41%), Positives = 387/690 (56%), Gaps = 45/690 (6%)

Query: 43  TSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
           +  T   R   C  ++ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C 
Sbjct: 22  SGATATGRKTKCE-ASQFQCTNGRCITQLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCN 80

Query: 103 SSPGECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEF 158
           +  G+C+P  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE 
Sbjct: 81  N--GQCIPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGES 138

Query: 159 DCSDKSDEDPEMCNGVNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLM 217
           DC   S ED E C  V  C++    CS   C+        S    C   +      D L 
Sbjct: 139 DCD--SGEDEENCGNVT-CSSDEFTCSSGRCI--------SRNFVCNGQDDCSDGSDELD 187

Query: 218 CAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDE 269
           CA     P   +  F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E
Sbjct: 188 CA----PPTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASE 243

Query: 270 FTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTV 329
             C +G CI + W CDGD DCKDGSDE +C    C   QF C++  +CI     C+G   
Sbjct: 244 IQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNG--- 299

Query: 330 EKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTK 386
                  +    +  V  +     + PG         I  + VC++  DC    DE   +
Sbjct: 300 -----IRDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKE 354

Query: 387 CGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNE 446
           C V+EC  +NGGC H C D  +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N 
Sbjct: 355 CHVNECLVNNGGCSHICKDSVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINL 413

Query: 447 KGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSAT 506
           KGG+KCEC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  
Sbjct: 414 KGGYKCECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTV 472

Query: 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
           A+D       +FW+D+S+K I+ A ID+   R V + ++      +AVDW+Y  IYWTDA
Sbjct: 473 ALDADIAAQKLFWADVSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDA 532

Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
              TI +A  +G  RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R 
Sbjct: 533 ASRTISVATLDGAKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRR 592

Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
            ++  DI+WPNG+TLDL++ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ 
Sbjct: 593 PLVTVDIQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTI 652

Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAIT 716
           FED +YW D + +A+Y ANKFTG  L  + 
Sbjct: 653 FEDRVYWIDGENEAVYGANKFTGSELATLV 682

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Oryctolagus cuniculus (taxid: 9986)

>sp|P98165|VLDLR_CHICK Very low-density lipoprotein receptor OS=Gallus gallus GN=VLDLR PE=1 SV=1

 Score =  490 bits (1262), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 289/697 (41%), Positives = 387/697 (55%), Gaps = 49/697 (7%)

Query: 58  TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           + F+C+ G CIP  W CDG  DC DG DE  C K+ C + +F C S  G+CVP  W CD 
Sbjct: 54  SQFQCSNGRCIPLLWKCDGDEDCSDGSDESACVKKTCAESDFVCNS--GQCVPNRWQCDG 111

Query: 118 NPDCSDGSDEKS--CKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
           +PDC DGSDE +  C  RTC+ +E  CG  + +CIP  W+CDGE DC   S ED E C  
Sbjct: 112 DPDCEDGSDESAELCHMRTCRVNEISCGPQSTQCIPVSWKCDGEKDCD--SGEDEENCGN 169

Query: 174 VNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
           V  C+A    CS   C+        S    C   +      D L CA     P      F
Sbjct: 170 VT-CSAAEFTCSSGQCI--------SKSFVCNGQDDCSDGSDELECA----PPTCGVHEF 216

Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDE--KKCHET------CRSDEFTCANGNCIQRIWLC 284
           +C    CIP +WVCD   DC D  DE  ++C         C + E  C +G CI + W C
Sbjct: 217 QCKSSTCIPISWVCDDDADCSDHSDESLEQCGRQPAPPVKCSTSEVQCGSGECIHKKWRC 276

Query: 285 DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
           DGD DCKDGSDE +C    C   QF C++   CI     C+G     D T  +    N+ 
Sbjct: 277 DGDPDCKDGSDEINCPSRTCRPDQFRCED-GNCIHGSRQCNGVRDCLDGT--DEANCNNV 333

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
           ++  G   F          I    VC+ H DC    DE   +C ++EC  +NGGC H C 
Sbjct: 334 IQCSGPGKF---KCRSGECIDINKVCNHHGDCKDWSDEPLKECNINECLVNNGGCSHICR 390

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KCEC  GY  D   
Sbjct: 391 DLVIGYECDCPAGFELV-DRRTCGDIDECQNPGICSQICINLKGGYKCECSRGYQMDLAT 449

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
              CKA      L+F  + DIRKI L+  E   +V   ++  A+D       ++W+D S+
Sbjct: 450 GV-CKAVGKEPCLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAEQKLYWADFSQ 508

Query: 525 KKIYKAPIDEGSE---RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581
           K I+ A ID   +    T +++   + A G+AVDWIY +IYWTD+   TI +A+  G  R
Sbjct: 509 KAIFSASIDTRDKVGTHTRILDNIHSPA-GIAVDWIYKNIYWTDSSAKTISVASLNGKKR 567

Query: 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641
           KVL  S L EP S+A++P+ G+MYWSDWG+ AKIE+AGM+G  R  ++ ++I+WPNG+ L
Sbjct: 568 KVLFLSELREPASIAVDPLSGFMYWSDWGEPAKIEKAGMNGFDRQQLVTTEIQWPNGIAL 627

Query: 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
           DLV+ RLYW+D+KL+ +SS D NG +RRLVL S   L HP +++ FED ++W D + +A+
Sbjct: 628 DLVKSRLYWLDSKLHMLSSVDLNGQDRRLVLKSHMFLPHPLALTIFEDRVFWIDGENEAV 687

Query: 702 YKANKFTG-------DNLTAITGVHQTHEPLNSPGTN 731
           Y ANKFTG       +NL     +   HE +   G N
Sbjct: 688 YGANKFTGAELVTLVNNLNDAQDIIVYHELVQPSGRN 724

Binds VLDL and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits. Binding to Reelin induces tyrosine phosphorylation of Dab1 and modulation of Tau phosphorylation.

Gallus gallus (taxid: 9031)

>sp|Q98931|LRP8_CHICK Low-density lipoprotein receptor-related protein 8 OS=Gallus gallus GN=LRP8 PE=1 SV=1

 Score =  477 bits (1228), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/687 (39%), Positives = 378/687 (55%), Gaps = 50/687 (7%)

Query: 59  MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDN 118
            F+C    CIP+ W CD  NDC D  DE  C K+ C + +F C +  G C+P  W CD  
Sbjct: 33  QFQCRNERCIPAVWACDEDNDCSDNSDEADCPKKTCAETDFACDN--GHCIPDRWKCDGE 90

Query: 119 PDCSDGSDEK--SCKNRTCQASEFRCGN--NRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
            +CSDGSDE   +C  + C A +  CG+  N+CIP+ W+CDG+ DC    DE        
Sbjct: 91  EECSDGSDESEAACTKQVCPAEKISCGDLSNKCIPSSWRCDGQKDCESGIDE-------- 142

Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRC 234
              A     CS            S    C          D   C+     P      F+C
Sbjct: 143 ---AGCAPACSPDEFQCSNKTCISINFVCDGYNNCGDGSDEKKCSPLTCSP----NEFQC 195

Query: 235 TGGMCIPSTWVCDGQNDCPDGVDEK--------KCHETCRSDEFTCANGNCIQRIWLCDG 286
              +CIP  WVCD Q DC D  DE         K   TC + EF C NG CI   W CDG
Sbjct: 196 NNSVCIPQLWVCDNQADCEDHSDESIERCGYDAKAFNTCAAHEFQCGNGECILLNWKCDG 255

Query: 287 DDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVR 346
           D+DCKD SDE+ C  V C   +F C + T CI     CD     K   CP+ +  + +  
Sbjct: 256 DEDCKDKSDEQDCPLVTCRPDEFQCGDGT-CIHGAKQCD-----KVHDCPDNS--DEAGC 307

Query: 347 IEGAVAFIPPGFAMAMK--IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
           ++ +    P  F       I    VCD H DC    DE   +CG++EC+ +NGGC H C 
Sbjct: 308 VQESACESPSKFQCKSGECIDGGKVCDLHRDCRDWSDEPLKECGINECSLNNGGCSHICK 367

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           DL +GY CEC  GYKL  ++ TC DIDECE P +CSQIC+N KG +KCEC  GY  D   
Sbjct: 368 DLKIGYECECPPGYKL-LDKKTCGDIDECENPDACSQICINYKGDYKCECYEGYEMDTLS 426

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
              CKA      L+F  +H++RKI L   + + I+   K+  A+D    T  I+W D+  
Sbjct: 427 -KNCKAVGKSPYLIFTNRHEVRKIDLVKRDYSRIIPMLKNVVALDVEVATNRIYWCDLFY 485

Query: 525 KKIYKAPIDEGS---ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581
           +KIY A ID+ S   E+ ++I+      +G+A+DW++ +IYWTD+   TI +A  +G+ R
Sbjct: 486 RKIYSAYIDKASDTAEQVILIDSQLNSPEGVAIDWVHKNIYWTDSGNKTISVATADGSRR 545

Query: 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641
           + +  S L EPR++A++P   +MYWSDWG  AKIE+AG++G  R +++  +I+WPNG+TL
Sbjct: 546 RTVFNSDLSEPRAIAVDPTRRFMYWSDWGDKAKIEKAGLNGVGRQVLVSDNIEWPNGITL 605

Query: 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
           DL+ +RLYWVD+KL+ +S  D+NG NR +++ S   LSHPF ++ FED ++W+D + +AI
Sbjct: 606 DLLNQRLYWVDSKLHSLSCIDFNGSNREVLISSIDDLSHPFGLAVFEDRVFWTDLENEAI 665

Query: 702 YKANKFTGDNLTAITGVHQTHEPLNSP 728
           + AN+ +G +++ +       E LN+P
Sbjct: 666 FSANRLSGLDISVLA------ENLNNP 686

Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. Also binds alpha2-macroglobulin. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development.

Gallus gallus (taxid: 9031)

>sp|P20063|LDLR_RABIT Low-density lipoprotein receptor (Fragment) OS=Oryctolagus cuniculus GN=LDLR PE=2 SV=1

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/691 (39%), Positives = 359/691 (51%), Gaps = 95/691 (13%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CI   WVCDG ++C DG DE  + C    C  ++F+C      C+P  W CD 
Sbjct: 19  FQCRNGKCISYKWVCDGSSECQDGSDEWEQTCMSLTCKSDDFSCGGRLNRCIPGHWKCDG 78

Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC DGSDE  C  +TC   EFRC    CI   + CDGE DC D SDE           
Sbjct: 79  QQDCEDGSDELGCAPKTCSQDEFRCAEGACISRLFACDGEPDCPDGSDEAS--------- 129

Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG 237
                     C P+    AH                                  FRC   
Sbjct: 130 ----------CAPSTCGPAH----------------------------------FRCNSS 145

Query: 238 MCIPSTWVCDGQNDCPDGVDE--KKC---------HETCRSDEFTCANGNCIQRIWLCDG 286
            C+P+ W CDG+ DC DG DE   +C            C   EF C +G C+   W CDG
Sbjct: 146 SCVPALWACDGEPDCDDGSDEWPARCGARPSPQPGRGPCSRHEFHCGSGECVHASWRCDG 205

Query: 287 DDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCD-----GDTVEKDSTCPNATPM 341
           D DC+DGSDE+ C    C   +F C + T CI     CD     GD +  +  C N T  
Sbjct: 206 DADCRDGSDERDCAAATCRPDEFQCSDGT-CIHGSRQCDQQQDCGD-MSDEVGCVNVT-- 261

Query: 342 NSSVRIEGAVAF-IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCL 400
                 EG   F    G  +++      VC+   DC    DE   +C  +EC + NGGC 
Sbjct: 262 ----LCEGPDKFKCHSGECISLD----KVCNSARDCQDWSDEPIKECATNECMRGNGGCS 313

Query: 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIK 460
           H C DL +G+ C C +GY+L   R  C DI+ECE P  CSQ+C+N  G +KCEC AG+  
Sbjct: 314 HTCFDLRIGHECHCPKGYRLVDQRR-CEDINECEDPDICSQLCVNLAGSYKCECRAGFQL 372

Query: 461 DPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWS 520
           DPH    CKA +  A L F  +H++RK++LD  E T+++ + K+  A+D    +  I+WS
Sbjct: 373 DPHSQA-CKAVDSIAYLFFTNRHEVRKMTLDRSEYTSLIANLKNVVALDAEVASNRIYWS 431

Query: 521 DISEKKIYKAPIDEGS---ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
           D+S++KIY A ID          VI  D    DGLAVDWI+ HIYWTD+   T+ +A+  
Sbjct: 432 DLSQRKIYSAQIDGAHGFPAYDTVISSDLQAPDGLAVDWIHGHIYWTDSVLGTVSVADTR 491

Query: 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
           G  RK L R    +PR++ ++P  G+MYW+DWG  AKIE+ G++G     ++  DI+WPN
Sbjct: 492 GFRRKTLFRQEGSKPRAIVVDPAHGFMYWTDWGVPAKIEKGGLNGVDVYSLVTEDIQWPN 551

Query: 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
           G+TLDL   RLYWVD+KL+ ISS D NGGNR+ VL   Q L+HPFS++ FED ++W+D  
Sbjct: 552 GITLDLSSGRLYWVDSKLHSISSIDVNGGNRKTVLEDEQRLAHPFSLAIFEDKVFWTDVI 611

Query: 698 QKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728
            +AI+ AN+ TG +      VH   E L SP
Sbjct: 612 NEAIFSANRLTGSD------VHLVAENLLSP 636

Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q924X6|LRP8_MOUSE Low-density lipoprotein receptor-related protein 8 OS=Mus musculus GN=Lrp8 PE=1 SV=2

 Score =  468 bits (1204), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 267/696 (38%), Positives = 376/696 (54%), Gaps = 61/696 (8%)

Query: 59  MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDN 118
            FRC    CIP  W CD  NDC D  DE  C KR C   +FTC +  G C+P  W CD  
Sbjct: 45  QFRCRNERCIPLVWRCDEDNDCSDNSDEDDCPKRTCADSDFTCDN--GHCIPERWKCDGE 102

Query: 119 PDCSDGSDEK--SCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
            +C DGSDE   +C +  C A +  CG  +++C+P  W+CDGE DC   +DE        
Sbjct: 103 EECPDGSDESKATCSSEECPAEKLSCGPTSHKCVPASWRCDGEKDCEGGADE-------- 154

Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRC 234
                    C  LC P     ++   ++                    S P      FRC
Sbjct: 155 -------AGCPTLCAPHEFQCSNRSCLASVFVCDGDDDCGDGSDERGCSDPACPPREFRC 207

Query: 235 -TGGMCIPSTWVCDGQNDCPDGVDEKKCHETC---------------RSDEFTCANGNCI 278
             GG CIP  WVCD Q DC D  DE    E C                + +FTC +G CI
Sbjct: 208 GGGGTCIPERWVCDRQFDCEDRSDEAA--ELCGRAGQGTTATPAACAPTAQFTCRSGECI 265

Query: 279 QRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338
              W CDGD DCKD SDE  C P  C   +F C + T  +  K         ++  CP+ 
Sbjct: 266 HLGWRCDGDRDCKDKSDEADCSPGPCRENEFQCGDGTCVLAIK------RCNQERDCPDG 319

Query: 339 TPMNSSVRIEGAVAFIPPGFAMAMK--IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDN 396
           +  + +  ++ +    P  F       +    VCD   DC    DE    CG++EC  +N
Sbjct: 320 S--DEAGCLQESTCEGPRRFQCKSGECVDGGKVCDDQRDCRDWSDEPQKVCGLNECLHNN 377

Query: 397 GGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVA 456
           GGC H C DL +G+ C C  G++L   + TC DIDEC+ P +CSQIC+N KG FKCEC  
Sbjct: 378 GGCSHICTDLKIGFECTCPAGFQLLDQK-TCGDIDECQDPDACSQICVNYKGYFKCECHP 436

Query: 457 GYIKDPHHPTQCKAAEGHA-SLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTG 515
           GY  D      CKA  G + SL+F  +H++R+I L   + + ++   K+  A+D    T 
Sbjct: 437 GYEMD-TLTKNCKAVAGKSPSLIFTNRHEVRRIDLVKRDYSRLIPMLKNVVALDVEVATN 495

Query: 516 MIFWSDISEKKIYKAPIDEGS---ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
            I+W D+S +KIY A +D+ S   E+ V+I+E     +GLAVDW++ HIYWTD+   TI 
Sbjct: 496 RIYWCDLSYRKIYSAHMDKASIPDEQVVLIDEQLHSPEGLAVDWVHKHIYWTDSGNKTIS 555

Query: 573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD 632
           +A  +G  R  L    L EPR++A++P+ G+MYWSDWG  AKIE+AG++G+ R  ++  +
Sbjct: 556 VATTDGRRRCTLFSRELSEPRAIAVDPLRGFMYWSDWGFQAKIEKAGLNGADRQTLVSDN 615

Query: 633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY 692
           I+WPNG+TLDL+ +RLYWVD+KL+++SS D+NGGNR+++++S   LSHPF ++ FED ++
Sbjct: 616 IEWPNGITLDLLSQRLYWVDSKLHQLSSIDFNGGNRKMLIFSTDFLSHPFGVAVFEDKVF 675

Query: 693 WSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728
           W+D + +AI+ AN+  G  +  +       E LN+P
Sbjct: 676 WTDLENEAIFSANRLNGLEIAILA------ENLNNP 705

Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor.

Mus musculus (taxid: 10090)

>sp|Q99087|LDLR1_XENLA Low-density lipoprotein receptor 1 OS=Xenopus laevis GN=ldlr-a PE=2 SV=1

 Score =  468 bits (1203), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/674 (38%), Positives = 362/674 (53%), Gaps = 83/674 (12%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CIP  W+CDG  +C D  DE  + C++  CG ++F+C      C+P++W CD 
Sbjct: 32  FQCGDGKCIPYKWICDGSAECKDSSDESPETCREVTCGTDQFSCGGRLNRCIPMSWKCDG 91

Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC +GSDE  C ++ C   +F C + +CI   + CD + DC D SDE        ++C
Sbjct: 92  QTDCENGSDENDCTHKVCADDQFTCRSGKCISLDFVCDEDLDCDDGSDE--------SYC 143

Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCT-G 236
                       PAP  N                                   MF+C   
Sbjct: 144 ------------PAPTCNP---------------------------------AMFQCKDK 158

Query: 237 GMCIPSTWVCDGQNDCPDGVDEKKCH--------ETCRSDEFTCANGNCIQRIWLCDGDD 288
           G+CIP  W CDG  DC DG DE+ C         + C   EF C +G CI   W CDG  
Sbjct: 159 GICIPKLWACDGDPDCEDGSDEEHCEGREPIKTDKPCSPLEFHCGSGECIHMSWKCDGGF 218

Query: 289 DCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDST----CPNATPMNSS 344
           DCKD SDEK C    C   QF C N   CI     CD +   KD +    C N T     
Sbjct: 219 DCKDKSDEKDCVKPTCRPDQFQC-NTGTCIHGSRQCDREYDCKDLSDEEGCVNVT----- 272

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
            + EG   F          I    VC+K  DC    DE   +CG +EC ++NGGC H C 
Sbjct: 273 -KCEGPDVF---KCRSGECITMDKVCNKKRDCRDWSDEPLKECGENECLRNNGGCSHICN 328

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           DL +GY C CNEGY+L   +  C DI+ECE P +CSQIC+N  GG+KCEC  GY  DP  
Sbjct: 329 DLKIGYECLCNEGYRLVDQKR-CEDINECENPNTCSQICINLVGGYKCECREGYQMDPVT 387

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
            + CK+    A L F  +H++RK++LD  E T+++   K+  A+D    +  I+WSD+++
Sbjct: 388 AS-CKSIGTVAYLFFTNRHEVRKMTLDRSEYTSVIPRLKNVVALDMEIASNKIYWSDLTQ 446

Query: 525 KKIYKAPI---DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581
           +KIY A +   D  S    VI       DG+AVDWI+ +IYWTD+  +TI +AN EG+ R
Sbjct: 447 RKIYSASMEKADNTSHHETVISNQIQAPDGIAVDWIHGNIYWTDSKFSTISVANTEGSKR 506

Query: 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL 641
           +      L++PR + ++P  G+MYW+DWG  AKIE+ G++G  R  ++  +I+WPNG+TL
Sbjct: 507 RTPPSDDLEKPRDIVVDPSQGFMYWTDWGLPAKIEKGGLNGVDRYPLVTENIEWPNGITL 566

Query: 642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
           DL+ +RLYWVD+KL+ +S  D  G NRR V+     L+HPF ++ FED ++W+D + +AI
Sbjct: 567 DLINQRLYWVDSKLHSLSCIDVTGENRRTVISDETHLAHPFGLTIFEDLVFWTDIENEAI 626

Query: 702 YKANKFTGDNLTAI 715
           + AN+ TG N+  +
Sbjct: 627 FSANRLTGRNIMKV 640

Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits.

Xenopus laevis (taxid: 8355)

>sp|P35951|LDLR_MOUSE Low-density lipoprotein receptor OS=Mus musculus GN=Ldlr PE=1 SV=2

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/677 (37%), Positives = 362/677 (53%), Gaps = 85/677 (12%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CI S WVCDG  +CPDG DE  + C    C   +F+C      C+P +W CD 
Sbjct: 32  FQCRDGKCIASKWVCDGSPECPDGSDESPETCMSVTCQSNQFSCGGRVSRCIPDSWRCDG 91

Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC + SDE+ C  +TC   +FRC + +CI   + CDG+ DC D SDE         HC
Sbjct: 92  QVDCENDSDEQGCPPKTCSQDDFRCQDGKCISPQFVCDGDRDCLDGSDE--------AHC 143

Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG 237
            A        C PA                                        FRC   
Sbjct: 144 QATT------CGPA---------------------------------------HFRCNSS 158

Query: 238 MCIPSTWVCDGQNDCPDGVDE------------KKCHETCRSDEFTCANGNCIQRIWLCD 285
           +CIPS W CDG  DC DG DE            K     C S EF C +  CI R W+CD
Sbjct: 159 ICIPSLWACDGDVDCVDGSDEWPQNCQGRDTASKGVSSPCSSLEFHCGSSECIHRSWVCD 218

Query: 286 GDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDST----CPNATPM 341
           G+ DCKD SDE+ C    C   +F C +  +CI     CD +   KD +    C N T  
Sbjct: 219 GEADCKDKSDEEHCAVATCRPDEFQCAD-GSCIHGSRQCDREHDCKDMSDELGCVNVTQC 277

Query: 342 NSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLH 401
           +   + +        G  +++      VCD   DC    DE   +C  +EC  +NGGC H
Sbjct: 278 DGPNKFK-----CHSGECISLD----KVCDSARDCQDWSDEPIKECKTNECLDNNGGCSH 328

Query: 402 KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD 461
            C DL +G  C C  G++L  + H C DIDEC+ P +CSQ+C+N +G +KCEC AG+  D
Sbjct: 329 ICKDLKIGSECLCPSGFRLV-DLHRCEDIDECQEPDTCSQLCVNLEGSYKCECQAGFHMD 387

Query: 462 PHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSD 521
           PH    CKA      LLF  +H++RK++LD  E T+++ + K+  A+D       I+WSD
Sbjct: 388 PHTRV-CKAVGSIGYLLFTNRHEVRKMTLDRSEYTSLLPNLKNVVALDTEVTNNRIYWSD 446

Query: 522 ISEKKIYKAPIDEGSERT--VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579
           +S+KKIY A +D+    +   +I ED    DGLAVDWI+ +IYWTD+   ++ +A+ +G 
Sbjct: 447 LSQKKIYSALMDQAPNLSYDTIISEDLHAPDGLAVDWIHRNIYWTDSVPGSVSVADTKGV 506

Query: 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639
            R+ L +     PR++ ++P+ G+MYW+DWG  AKI++ G++G   + ++  +I+WPNG+
Sbjct: 507 KRRTLFQEAGSRPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIHSLVTENIQWPNGI 566

Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
           TLDL   RLYWVD+KL+ ISS D NGGNR+ +L     L+HPFS++ +ED +YW+D   +
Sbjct: 567 TLDLSSGRLYWVDSKLHSISSIDVNGGNRKTILEDENRLAHPFSLAIYEDKVYWTDVINE 626

Query: 700 AIYKANKFTGDNLTAIT 716
           AI+ AN+ TG ++  + 
Sbjct: 627 AIFSANRLTGSDVNLVA 643

Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. In order to be internalized, the receptor-ligand complexes must first cluster into clathrin-coated pits.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	734
91094773	894	PREDICTED: similar to lipophorin recepto	0.884	0.725	0.507	0.0
270016569	840	hypothetical protein TcasGA2_TC001981 [T	0.821	0.717	0.533	0.0
307195306	903	Very low-density lipoprotein receptor [H	0.852	0.693	0.525	0.0
307175679	1019	Very low-density lipoprotein receptor [C	0.848	0.611	0.521	0.0
332020904	902	Very low-density lipoprotein receptor [A	0.840	0.684	0.521	0.0
195112156	1070	GI10347 [Drosophila mojavensis] gi|19391	0.836	0.573	0.504	0.0
292606977	921	lipophorin receptor long isoform [Nilapa	0.831	0.662	0.543	0.0
292606979	907	lipophorin receptor short isoform [Nilap	0.831	0.672	0.543	0.0
195112154	1017	GI10346 [Drosophila mojavensis] gi|19391	0.844	0.609	0.507	0.0
2764400	883	lipophorin receptor [Locusta migratoria]	0.787	0.654	0.500	0.0

>gi|91094773|ref|XP_967944.1| PREDICTED: similar to lipophorin receptor [Tribolium castaneum]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/731 (50%), Positives = 475/731 (64%), Gaps = 82/731 (11%)

Query: 10  YIGVLVVIRSVDALYRLERSVIDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIP 69
           ++  LVV  S+     L   ++   I    + +    +   +K C  +  FRC+ G CIP
Sbjct: 65  FLTTLVVCTSIIVTMDL---ILKIAIVALLNVYAVTALVEENKTCEKNE-FRCSSGRCIP 120

Query: 70  STWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
           + W CD + DC DG DE +  CQ+++CG +EFTCRS+ GECVPLTWMCDDNPDCSDGSDE
Sbjct: 121 AHWQCDHEQDCNDGSDEDEHVCQQKVCGVDEFTCRSASGECVPLTWMCDDNPDCSDGSDE 180

Query: 128 KSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHL 187
           K+C N TC++ EF C N +CI   W CD + DC D SDE                     
Sbjct: 181 KAC-NETCRSDEFTCKNGKCIQKRWVCDLDNDCGDNSDE--------------------- 218

Query: 188 CLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCD 247
                      P ++CA        PD               + F+C    CI S W CD
Sbjct: 219 --------KDCPPVTCA--------PD---------------SEFQCAENFCITSKWRCD 247

Query: 248 GQNDCPDGVDEKKCHET------CRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEK--S 298
           G+ DC DG DE+ C +       C S+E+ C +   CI + WLCDG  DC DGSDE   +
Sbjct: 248 GEYDCVDGKDEQGCPKMATSSSFCLSEEYECGDHLTCIHKGWLCDGTRDCPDGSDESPDN 307

Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPM----NSSVRIEGAVAFI 354
           CQ + C A QF C++  +CI     C G        CP+ +      + + + +    F 
Sbjct: 308 CQNITCRADQFQCKD-RSCIAGHLHCSG-----HPECPDGSDELNCGSPAPKCDPKTEFD 361

Query: 355 PPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCEC 414
             G      I  + VCDK   CP  +DE   +CG++EC ++NGGC  +CVD P  + C+C
Sbjct: 362 CGG---GNCIPLSQVCDKRQHCPDGEDEPVGRCGINECNENNGGCSQRCVDTPSSFYCDC 418

Query: 415 NEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH 474
           N GYKL  NR TC DI+ECE PGSCSQIC+N+KGGFKC+C +GY++DP   T+CKA EGH
Sbjct: 419 NHGYKLVDNR-TCKDINECEIPGSCSQICINDKGGFKCDCQSGYMRDPRDLTKCKAIEGH 477

Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           ASLLFAR+ DIRKISLDHHEMT+IVN T SATA+DFVFRTGMIFWSD+++KKIYKAPIDE
Sbjct: 478 ASLLFARRRDIRKISLDHHEMTSIVNETNSATALDFVFRTGMIFWSDVTDKKIYKAPIDE 537

Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
           G+ER+VVI  D T +DGLAVDWIY+HIYWTD  KNTIELANF+G MRKVL++  L+EPR+
Sbjct: 538 GNERSVVISNDITTSDGLAVDWIYNHIYWTDTGKNTIELANFDGKMRKVLIKDELEEPRA 597

Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
           LALNP++GWM+W+DWG + KIER+GMDGSHR  ++  D+KWPNGLTLDLV++R+YWVDAK
Sbjct: 598 LALNPLEGWMFWTDWGSDPKIERSGMDGSHRQAIVTYDVKWPNGLTLDLVKKRVYWVDAK 657

Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
           LN ISSCDYNG NRRL+L+SP +L HPFSI+TFEDW+YW+DW + A++KANKFTG ++  
Sbjct: 658 LNVISSCDYNGRNRRLILFSPDSLRHPFSITTFEDWVYWTDWDKAAVFKANKFTGSDVQP 717

Query: 715 ITGVHQTHEPL 725
           +T       P+
Sbjct: 718 VTATAMIQNPM 728

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016569|gb|EFA13015.1| hypothetical protein TcasGA2_TC001981 [Tribolium castaneum]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/681 (53%), Positives = 457/681 (67%), Gaps = 78/681 (11%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           FRC+ G CIP+ W CD + DC DG DE +  CQ+++CG +EFTCRS+ GECVPLTWMCDD
Sbjct: 33  FRCSSGRCIPAHWQCDHEQDCNDGSDEDEHVCQQKVCGVDEFTCRSASGECVPLTWMCDD 92

Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
           NPDCSDGSDEK+C N TC++ EF C N +CI   W CD + DC D SDE           
Sbjct: 93  NPDCSDGSDEKAC-NETCRSDEFTCKNGKCIQKRWVCDLDNDCGDNSDE----------- 140

Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG 237
                                P ++CA        PD               + F+C   
Sbjct: 141 ------------------KDCPPVTCA--------PD---------------SEFQCAEN 159

Query: 238 MCIPSTWVCDGQNDCPDGVDEKKCHET------CRSDEFTCANG-NCIQRIWLCDGDDDC 290
            CI S W CDG+ DC DG DE+ C +       C S+E+ C +   CI + WLCDG  DC
Sbjct: 160 FCITSKWRCDGEYDCVDGKDEQGCPKMATSSSFCLSEEYECGDHLTCIHKGWLCDGTRDC 219

Query: 291 KDGSDEK--SCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPM----NSS 344
            DGSDE   +CQ + C A QF C++  +CI     C G        CP+ +      + +
Sbjct: 220 PDGSDESPDNCQNITCRADQFQCKD-RSCIAGHLHCSG-----HPECPDGSDELNCGSPA 273

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
            + +    F   G      I  + VCDK   CP  +DE   +CG++EC ++NGGC  +CV
Sbjct: 274 PKCDPKTEFDCGG---GNCIPLSQVCDKRQHCPDGEDEPVGRCGINECNENNGGCSQRCV 330

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           D P  + C+CN GYKL  NR TC DI+ECE PGSCSQIC+N+KGGFKC+C +GY++DP  
Sbjct: 331 DTPSSFYCDCNHGYKLVDNR-TCKDINECEIPGSCSQICINDKGGFKCDCQSGYMRDPRD 389

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
            T+CKA EGHASLLFAR+ DIRKISLDHHEMT+IVN T SATA+DFVFRTGMIFWSD+++
Sbjct: 390 LTKCKAIEGHASLLFARRRDIRKISLDHHEMTSIVNETNSATALDFVFRTGMIFWSDVTD 449

Query: 525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584
           KKIYKAPIDEG+ER+VVI  D T +DGLAVDWIY+HIYWTD  KNTIELANF+G MRKVL
Sbjct: 450 KKIYKAPIDEGNERSVVISNDITTSDGLAVDWIYNHIYWTDTGKNTIELANFDGKMRKVL 509

Query: 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV 644
           ++  L+EPR+LALNP++GWM+W+DWG + KIER+GMDGSHR  ++  D+KWPNGLTLDLV
Sbjct: 510 IKDELEEPRALALNPLEGWMFWTDWGSDPKIERSGMDGSHRQAIVTYDVKWPNGLTLDLV 569

Query: 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKA 704
           ++R+YWVDAKLN ISSCDYNG NRRL+L+SP +L HPFSI+TFEDW+YW+DW + A++KA
Sbjct: 570 KKRVYWVDAKLNVISSCDYNGRNRRLILFSPDSLRHPFSITTFEDWVYWTDWDKAAVFKA 629

Query: 705 NKFTGDNLTAITGVHQTHEPL 725
           NKFTG ++  +T       P+
Sbjct: 630 NKFTGSDVQPVTATAMIQNPM 650

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195306|gb|EFN77254.1| Very low-density lipoprotein receptor [Harpegnathos saltator]

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/699 (52%), Positives = 452/699 (64%), Gaps = 73/699 (10%)

Query: 36  GVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK-RIC 94
           GVD D    P V  R+ PC + T F+C+ G CIP TW+CD Q DC +GVDEK C + + C
Sbjct: 77  GVDED----PAVC-RTVPC-SETEFQCSPGECIPKTWLCDRQVDCTNGVDEKNCHRTKTC 130

Query: 95  GQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQC 154
             E+FTC S  GECV LTWMCDDNPDCSDGSDE  C N TC++ EF C N  CI   W C
Sbjct: 131 TPEQFTCHSGNGECVALTWMCDDNPDCSDGSDEAEC-NDTCRSDEFTCANKHCIQQLWVC 189

Query: 155 DGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPD 214
           D + DC D SDE                                     AC         
Sbjct: 190 DHDNDCGDNSDEK------------------------------------AC--------- 204

Query: 215 LLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCR-----SDE 269
                  G   C   T F C+   CI S W CDG  DCPD  DE  C E        + E
Sbjct: 205 -------GPVTCHPDTDFACSESYCITSRWRCDGDYDCPDRSDEMGCKEPSEKISHCNKE 257

Query: 270 FTCANG-NCIQRIWLCDGDDDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDG 326
           F C +G  CI + W+CDG+ DC +G+DE  + C  + C   QF C++  +CI     C+G
Sbjct: 258 FDCNDGVTCIHQTWVCDGEKDCPNGADESPQRCHNITCRPDQFQCEDRHSCISGHLYCNG 317

Query: 327 DTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTK 386
            T   D     +   N + ++      +    +    I    VCDK+PDC   +DE    
Sbjct: 318 KTECADG----SDEKNCTSKVVSCDPQVQFECSEGSCIPLEHVCDKNPDCIGWEDESIQY 373

Query: 387 CGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNE 446
           CGV+ECAK+NGGC   CVDLP+GY C+CN GY+L  NR TC DI+EC  PGSCSQ C NE
Sbjct: 374 CGVNECAKNNGGCSQICVDLPIGYRCDCNAGYRLIDNR-TCDDINECLEPGSCSQFCKNE 432

Query: 447 KGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSAT 506
           KG FKC C AGY+KDP + T+CKAAEGHASLLFAR+HDIRK++LD  EMTAIVN+TK AT
Sbjct: 433 KGSFKCSCAAGYLKDPRNLTRCKAAEGHASLLFARRHDIRKVALDRQEMTAIVNNTKMAT 492

Query: 507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
           A+DFVFRTGMIFWSDISEKKIYKAPIDEG+ERTVVIE D T +DGLAVDWIYSHIYWTD+
Sbjct: 493 ALDFVFRTGMIFWSDISEKKIYKAPIDEGNERTVVIENDLTTSDGLAVDWIYSHIYWTDS 552

Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
            K+TI+LANFEG MRK L++  + EPR++ALNP++GWM+W+DW   A+IERAGMDGSHR+
Sbjct: 553 GKDTIQLANFEGNMRKTLIQDRIQEPRAIALNPLEGWMFWTDWSDEARIERAGMDGSHRS 612

Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
           +++ +D+KWPNGL LDL+ +R+YWVDAKLN I SC+Y+G  RR VLYSP  L HPFSI+T
Sbjct: 613 VIVGNDVKWPNGLALDLIGKRVYWVDAKLNIIGSCNYDGTGRRTVLYSPDNLRHPFSITT 672

Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPL 725
           FED++YW+DW ++ I+KANKFTG  + A+T +     P+
Sbjct: 673 FEDYVYWTDWDKETIFKANKFTGKEVEAVTSIRTLQHPM 711

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175679|gb|EFN65567.1| Very low-density lipoprotein receptor [Camponotus floridanus]

 Score =  696 bits (1795), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/704 (52%), Positives = 458/704 (65%), Gaps = 81/704 (11%)

Query: 36  GVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK-RIC 94
           GVD D    P V  R+ PC + T F+C+ G CIP TW+CD Q DC DG+DEK C + + C
Sbjct: 190 GVDED----PAVC-RAIPC-SETEFQCSPGECIPKTWLCDHQADCTDGLDEKNCHRSKSC 243

Query: 95  GQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQC 154
             E+FTC S  GECV LTWMCDDNPDCSDGSDE  C N TC++ EF C N  CI   W C
Sbjct: 244 TPEQFTCHSGNGECVALTWMCDDNPDCSDGSDEAEC-NDTCRSDEFTCANKHCIQQLWVC 302

Query: 155 DGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPD 214
           D + DC D SDE                     C P                        
Sbjct: 303 DNDNDCGDNSDE-------------------KACEPTA---------------------- 321

Query: 215 LLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSD------ 268
                      C  +T F C+   CI S W CDG  DCPD  DE  C E    +      
Sbjct: 322 -----------CHPNTDFACSEHYCITSRWRCDGDYDCPDRSDEIGCKEPPNKERISHCD 370

Query: 269 -EFTCANG-NCIQRIWLCDGDDDCKDGSDEKS--CQPVKCTAGQFTCQNLTACIPDKWVC 324
            EF C +G  CI + W+CDG+ DC +G+DE S  C  V C   QF C++  +CI     C
Sbjct: 371 KEFDCDDGVTCIHQTWVCDGEKDCPNGADESSQRCHNVTCRPDQFQCEDRRSCISGYLYC 430

Query: 325 DGDTV---EKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQD 381
           +G      E D     +  ++   RI+   +    G  ++++ V    C++ PDC   +D
Sbjct: 431 NGKAECADESDEKNCTSKGISCDRRIQFECS---EGSCISLEYV----CNQKPDCIGWED 483

Query: 382 EDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ 441
           E    CGV+ECAK+NGGC   CVD+P+GY C+C+ GY+L  NR TC DIDEC  PGSCSQ
Sbjct: 484 ESADLCGVNECAKNNGGCSQICVDMPIGYRCDCHAGYRLIDNR-TCDDIDECLEPGSCSQ 542

Query: 442 ICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNS 501
            C NEKG FKC C AGY+KDP + T+CKAAEGHASLLFAR+HDIRK++LD  EMTAIVN+
Sbjct: 543 FCQNEKGSFKCSCAAGYLKDPRNSTRCKAAEGHASLLFARRHDIRKVALDRQEMTAIVNN 602

Query: 502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI 561
           TK ATA+DFVFRTGMIFWSDISEKKIYKAPIDEG+ERTVVIE+D T +DGLAVDWIYSHI
Sbjct: 603 TKMATALDFVFRTGMIFWSDISEKKIYKAPIDEGNERTVVIEKDLTTSDGLAVDWIYSHI 662

Query: 562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD 621
           YWTD+ K+TIELANFEG MRK L++ ++ EPR++ALNP++GWM+W+DW   A+IERAGMD
Sbjct: 663 YWTDSGKDTIELANFEGNMRKTLIQDHIQEPRAIALNPLEGWMFWTDWSDEARIERAGMD 722

Query: 622 GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP 681
           G+HR++++ +D+KWPNGLTLDL+ +R+YWVDAKLN I SC+Y+G  RR VLYSP  L HP
Sbjct: 723 GTHRSVIVGNDVKWPNGLTLDLIGKRVYWVDAKLNIIGSCNYDGTGRRTVLYSPSNLRHP 782

Query: 682 FSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPL 725
           FSI+TFED++YW+DW ++ I+KANKFTG  + A+T +     P+
Sbjct: 783 FSITTFEDYVYWTDWDKETIFKANKFTGKEVEAVTSIKTLQHPM 826

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020904|gb|EGI61302.1| Very low-density lipoprotein receptor [Acromyrmex echinatior]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/688 (52%), Positives = 443/688 (64%), Gaps = 71/688 (10%)

Query: 50  RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK-RICGQEEFTCRSSPGEC 108
           R  PC N   F C+ G CIP TW+CD Q DC +G+DEK C + + C  E+FTC S  GEC
Sbjct: 82  RLIPC-NEREFECSPGECIPKTWLCDHQTDCSNGLDEKDCYRTKTCTPEQFTCHSGNGEC 140

Query: 109 VPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP 168
           V LTWMCDDNPDCSDGSDE  C N TC++ EF C N  CI   W CD + DC D  + D 
Sbjct: 141 VALTWMCDDNPDCSDGSDEAEC-NDTCRSDEFTCANKHCIQQLWVCDNDNDCGD--NSDE 197

Query: 169 EMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRN 228
           + C                                                  G   C  
Sbjct: 198 KGC--------------------------------------------------GPITCHP 207

Query: 229 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET--------CRSDEFTCANG-NCIQ 279
            T F C+   CI S W CDG  DCPD  DE  C +         C + EF C +G  CI 
Sbjct: 208 GTDFACSENYCITSRWRCDGDYDCPDRSDEMGCKDIQNGKKISHCENKEFDCDDGVTCIH 267

Query: 280 RIWLCDGDDDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN 337
           + W+CDG+ DC +G+DE  + C  V C   QF C++  +CI     C+G     D     
Sbjct: 268 QTWVCDGEKDCSNGADESPQRCHNVTCRPDQFQCEDRRSCISGHLYCNGKAECSDG---- 323

Query: 338 ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNG 397
           +   N + +I      I    +    I    VC+K+PDC   +DE    CGV+ECAK+NG
Sbjct: 324 SDEKNCTSKIVSCDPRIQFECSEGSCIPLENVCNKNPDCIGWEDESAELCGVNECAKNNG 383

Query: 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG 457
           GC   CVDLP+GY C+C  GY+L  NR TC DIDEC  PGSCSQ C NEKGGFKC C  G
Sbjct: 384 GCSQICVDLPIGYRCDCRTGYRLIDNR-TCDDIDECLEPGSCSQFCHNEKGGFKCSCATG 442

Query: 458 YIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMI 517
           Y+KDP + T+CKAAEGHASLLFAR+HDIRK++LD  EMTAIVN+TK ATA+DFVFRTGMI
Sbjct: 443 YLKDPRNLTRCKAAEGHASLLFARRHDIRKVALDRQEMTAIVNNTKMATALDFVFRTGMI 502

Query: 518 FWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
           FWSDISEKKIYKAPIDEG+ERTVVIE D T +DGLAVDWIYSHIYWTD+ K+TIELANFE
Sbjct: 503 FWSDISEKKIYKAPIDEGNERTVVIENDFTTSDGLAVDWIYSHIYWTDSGKDTIELANFE 562

Query: 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
           G MRK L+R  + EPR++ALNP++GWM+W+DW   A+IERAGMDG+HR++++ +D+KWPN
Sbjct: 563 GNMRKTLIRDRIQEPRAIALNPLEGWMFWTDWSDEARIERAGMDGTHRSVIVGNDVKWPN 622

Query: 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
           GL LDL+ +R+YWVDAKLN I SC+Y+G  RR VLYSP++L HPFSI+TFED++YW+DW 
Sbjct: 623 GLALDLIGKRVYWVDAKLNIIGSCNYDGTGRRTVLYSPESLRHPFSITTFEDYVYWTDWD 682

Query: 698 QKAIYKANKFTGDNLTAITGVHQTHEPL 725
           ++ I+KANKFTG  + A+T +     P+
Sbjct: 683 KETIFKANKFTGKEVEAVTSIRTLQHPM 710

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112156|ref|XP_002000642.1| GI10347 [Drosophila mojavensis] gi|193917236|gb|EDW16103.1| GI10347 [Drosophila mojavensis]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/680 (50%), Positives = 448/680 (65%), Gaps = 66/680 (9%)

Query: 56  NSTMFRCTGG-MCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWM 114
           N   FRC  G  C+P +W+CDG  DC DG DE +C+ + C  +EF C+S  GEC+PL WM
Sbjct: 271 NHFTFRCHNGEQCLPRSWICDGDPDCRDGSDELECKSKTCSPDEFACKSGEGECIPLAWM 330

Query: 115 CDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
           CD + DCSDGSDE +C N TC++ EF C N+RCI   W CD + DC D SDE        
Sbjct: 331 CDQSKDCSDGSDEATC-NITCRSDEFTCNNSRCIQKRWVCDQDNDCGDGSDE-------- 381

Query: 175 NHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRC 234
                                        ACP+                  C  +T F C
Sbjct: 382 ----------------------------LACPK----------------VECPKNTSFSC 397

Query: 235 TGGMCIPSTWVCDGQNDCPDGVDEKKCHET------CRSDEFTCANG-NCIQRIWLCDGD 287
           + G CI   WVCDG+ DC DG DE+ C         C+ +EF C +   C+ + W+CDGD
Sbjct: 398 SNGACITRAWVCDGEEDCEDGGDERGCGTVSQTITPCQPNEFQCKDRITCLHQSWVCDGD 457

Query: 288 DDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSV 345
            DC DG DE   SC+ V C   QF C +L +CI     C+G    +D +      +++ +
Sbjct: 458 RDCPDGDDEHASSCKNVTCRPDQFLCDDL-SCIAGHLTCNGQRDCRDGSDERDCRVSAEL 516

Query: 346 RIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVD 405
           +   A +    G    + +  + VCD+  DCP  +DE   KCG++EC   NGGC+H+CVD
Sbjct: 517 KRCNATSQFDCGGGQCIAL--SQVCDRRKDCPDGEDEPANKCGINECEVRNGGCMHRCVD 574

Query: 406 LPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHP 465
            PVGY CEC+ GYKL+S+ H C+DI+ECE PG CSQIC+NE GGFKCEC AGY++D H+ 
Sbjct: 575 QPVGYRCECHAGYKLTSDGHHCMDINECEEPGVCSQICVNEVGGFKCECEAGYMRDSHNR 634

Query: 466 TQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK 525
           T+CKA EGHASLL AR+HDIRKI+LDH E+T+IVN+TK+ATA+DFVFRTGMIFWSD++ +
Sbjct: 635 TRCKATEGHASLLLARRHDIRKIALDHMEITSIVNNTKAATALDFVFRTGMIFWSDVNTQ 694

Query: 526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV 585
            IYKAPIDEG+E+TVV+++    +DGLAVDWIY+H+Y+TD HK TIEL NF+G M KVL+
Sbjct: 695 SIYKAPIDEGNEKTVVLKKSSVTSDGLAVDWIYNHVYYTDTHKCTIELTNFDGNMGKVLI 754

Query: 586 RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ 645
              LD PRS+AL+PI+GWMYWSDWG + +IERAGMDGSHR  +I  D+KWPNG+TLDLV+
Sbjct: 755 EDALDIPRSIALDPIEGWMYWSDWGASPRIERAGMDGSHRTTIINYDVKWPNGITLDLVR 814

Query: 646 RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN 705
           +R+YWVD KLN ISS +Y+G  RR +LYS + L HPFSI+TFED++YW+DW ++ ++KAN
Sbjct: 815 KRIYWVDGKLNIISSANYDGSQRRQILYSTEYLRHPFSITTFEDYIYWTDWDKQTVFKAN 874

Query: 706 KFTGDNLTAITGVHQTHEPL 725
           KFTG+++  IT VH    P+
Sbjct: 875 KFTGEDVEPITAVHMLQHPM 894

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|292606977|gb|ADE34167.1| lipophorin receptor long isoform [Nilaparvata lugens]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/682 (54%), Positives = 448/682 (65%), Gaps = 72/682 (10%)

Query: 58  TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMC 115
           T FRC+ G CIP  W CD +NDC DG DE    C+ R+C  +EFTCR +PGECVPLTWMC
Sbjct: 114 TEFRCSNGRCIPKHWQCDNENDCVDGGDEHPSLCEHRVCDPDEFTCRGNPGECVPLTWMC 173

Query: 116 DDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED---PEMCN 172
           DDNPDCSDGSDEKSC N TC++ EF CGN +CI   W CD + DC D SDE    P  C+
Sbjct: 174 DDNPDCSDGSDEKSC-NETCRSDEFTCGNGKCIQKRWVCDSDLDCEDGSDEHNCPPTKCD 232

Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST-- 230
             +  A  NG    +C+    IN    K    CP+G     D   C  A  KP   S   
Sbjct: 233 PTSGFACGNG---SICI---NINWRCDK-DLDCPDG----EDEQDCG-ASHKPIFKSVCA 280

Query: 231 --MFRCTGGM-CIPSTWVCDGQNDCPDGVDEKK---CHETCRSDEFTCANGNCIQRIWLC 284
              F C   + CI  +W+CDG  DCPDG DE+     + TCR DEF C +  CI     C
Sbjct: 281 EREFECPDRLTCIHQSWLCDGNEDCPDGSDERLEQCANLTCRDDEFQCRSRECIAGHLFC 340

Query: 285 DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
           +G  DC DGSDE                    C   +  CD  T   +  C N       
Sbjct: 341 NGIVDCHDGSDED-------------------CATQRPACDPHT---EFDCGN------- 371

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
                          +AM+     VCD+  DCP  +DE   KCGV+EC   NG C   CV
Sbjct: 372 ------------NMCIAME----QVCDRKEDCPQGEDEPGDKCGVNECLDHNGHCSQLCV 415

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           D P G+ C+C+ GYKL  NR TC DIDECE PG+CSQIC+NEKG FKCEC  GY++DPH 
Sbjct: 416 DTPAGHYCDCHPGYKLVDNR-TCDDIDECENPGACSQICINEKGTFKCECHRGYLRDPHD 474

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
            T+CKA EGHASLLFAR+HDIRKISLDHHEMTAIVN+TK A+A+DFVFRTGMIFW+DI E
Sbjct: 475 HTRCKATEGHASLLFARRHDIRKISLDHHEMTAIVNNTKGASALDFVFRTGMIFWTDIIE 534

Query: 525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584
           +KIYKAPIDEG+ER  VI +D T ADGLAVDWIY+HIYWTD+ KNTI L+NFEG+MRKVL
Sbjct: 535 RKIYKAPIDEGTERITVITKDITTADGLAVDWIYNHIYWTDSGKNTIGLSNFEGSMRKVL 594

Query: 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV 644
           +   ++EPR++ALNP+DGWMYW+DWG + +IERAGMDG+HR +VI  DIKWPNGLTLDLV
Sbjct: 595 LTDEIEEPRAIALNPLDGWMYWTDWGTSPRIERAGMDGTHRQVVISYDIKWPNGLTLDLV 654

Query: 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKA 704
           + R+YW+DAKL+ +SSC+Y+G NR  +L S  TL HP+SIS FEDW+YW+DW + AI+KA
Sbjct: 655 RSRIYWIDAKLSTVSSCNYDGSNRLTILRSFDTLKHPYSISVFEDWIYWTDWHKVAIFKA 714

Query: 705 NKFTGDNLTAITGVHQTHEPLN 726
           NKF G N+TA+T  H    P++
Sbjct: 715 NKFHGGNITAVTAQHMLQSPMS 736

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|292606979|gb|ADE34168.1| lipophorin receptor short isoform [Nilaparvata lugens]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/682 (54%), Positives = 448/682 (65%), Gaps = 72/682 (10%)

Query: 58  TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMC 115
           T FRC+ G CIP  W CD +NDC DG DE    C+ R+C  +EFTCR +PGECVPLTWMC
Sbjct: 100 TEFRCSNGRCIPKHWQCDNENDCVDGGDEHPSLCEHRVCDPDEFTCRGNPGECVPLTWMC 159

Query: 116 DDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED---PEMCN 172
           DDNPDCSDGSDEKSC N TC++ EF CGN +CI   W CD + DC D SDE    P  C+
Sbjct: 160 DDNPDCSDGSDEKSC-NETCRSDEFTCGNGKCIQKRWVCDSDLDCEDGSDEHNCPPTKCD 218

Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST-- 230
             +  A  NG    +C+    IN    K    CP+G     D   C  A  KP   S   
Sbjct: 219 PTSGFACGNG---SICI---NINWRCDK-DLDCPDG----EDEQDCG-ASHKPIFKSVCA 266

Query: 231 --MFRCTGGM-CIPSTWVCDGQNDCPDGVDEKK---CHETCRSDEFTCANGNCIQRIWLC 284
              F C   + CI  +W+CDG  DCPDG DE+     + TCR DEF C +  CI     C
Sbjct: 267 EREFECPDRLTCIHQSWLCDGNEDCPDGSDERLEQCANLTCRDDEFQCRSRECIAGHLFC 326

Query: 285 DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
           +G  DC DGSDE                    C   +  CD  T   +  C N       
Sbjct: 327 NGIVDCHDGSDED-------------------CATQRPACDPHT---EFDCGN------- 357

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
                          +AM+     VCD+  DCP  +DE   KCGV+EC   NG C   CV
Sbjct: 358 ------------NMCIAME----QVCDRKEDCPQGEDEPGDKCGVNECLDHNGHCSQLCV 401

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           D P G+ C+C+ GYKL  NR TC DIDECE PG+CSQIC+NEKG FKCEC  GY++DPH 
Sbjct: 402 DTPAGHYCDCHPGYKLVDNR-TCDDIDECENPGACSQICINEKGTFKCECHRGYLRDPHD 460

Query: 465 PTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE 524
            T+CKA EGHASLLFAR+HDIRKISLDHHEMTAIVN+TK A+A+DFVFRTGMIFW+DI E
Sbjct: 461 HTRCKATEGHASLLFARRHDIRKISLDHHEMTAIVNNTKGASALDFVFRTGMIFWTDIIE 520

Query: 525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL 584
           +KIYKAPIDEG+ER  VI +D T ADGLAVDWIY+HIYWTD+ KNTI L+NFEG+MRKVL
Sbjct: 521 RKIYKAPIDEGTERITVITKDITTADGLAVDWIYNHIYWTDSGKNTIGLSNFEGSMRKVL 580

Query: 585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV 644
           +   ++EPR++ALNP+DGWMYW+DWG + +IERAGMDG+HR +VI  DIKWPNGLTLDLV
Sbjct: 581 LTDEIEEPRAIALNPLDGWMYWTDWGTSPRIERAGMDGTHRQVVISYDIKWPNGLTLDLV 640

Query: 645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKA 704
           + R+YW+DAKL+ +SSC+Y+G NR  +L S  TL HP+SIS FEDW+YW+DW + AI+KA
Sbjct: 641 RSRIYWIDAKLSTVSSCNYDGSNRLTILRSFDTLKHPYSISVFEDWIYWTDWHKVAIFKA 700

Query: 705 NKFTGDNLTAITGVHQTHEPLN 726
           NKF G N+TA+T  H    P++
Sbjct: 701 NKFHGGNITAVTAQHMLQSPMS 722

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112154|ref|XP_002000641.1| GI10346 [Drosophila mojavensis] gi|193917235|gb|EDW16102.1| GI10346 [Drosophila mojavensis]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/688 (50%), Positives = 446/688 (64%), Gaps = 68/688 (9%)

Query: 49  WRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPG 106
           +R   C +S  FRCT G CIP+ W CD +NDC DG DE    C+ R C  +E++C+S  G
Sbjct: 170 FREATC-SSDHFRCTNGNCIPNKWRCDQENDCSDGSDEDSTLCKARTCSPDEYSCKSGVG 228

Query: 107 ECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
           ECVPL WMCD + DCSDGSDE +C N+TC++ EF CGN RCI   W CD + DC D +DE
Sbjct: 229 ECVPLAWMCDQSKDCSDGSDEHNC-NQTCRSDEFTCGNGRCIQRRWVCDHDNDCGDGTDE 287

Query: 167 DPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
                     C  V         P   +  H+                            
Sbjct: 288 --------RDCPVV---------PCDSVAEHT---------------------------- 302

Query: 227 RNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET------CRSDEFTCANG-NCIQ 279
                  C  G CI   WVCDG  DCPD  DE+ C         C   E+ C +   C+ 
Sbjct: 303 -------CPNGACIAKRWVCDGDPDCPDASDERSCANATKLVTPCLPHEYQCKDRITCLH 355

Query: 280 RIWLCDGDDDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN 337
             WLCDGD DC DG DE   SC+ V C   QF C +  +CI     C+G T   D +   
Sbjct: 356 HSWLCDGDRDCPDGDDEHASSCKNVTCRPDQFQCGD-RSCIAGHLTCNGQTDCADGSDER 414

Query: 338 ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNG 397
              + + V+   A +    G    + + +  VCDK  DCP  +DE   KCG +ECA  NG
Sbjct: 415 DCKLAAPVKSCNATSQFDCGGGQCIPLSK--VCDKRKDCPDGEDEPAKKCGQNECAVKNG 472

Query: 398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG 457
           GC+H+CVD  VGY C+C+EGYKLS + H+C+D++ECE PG CSQIC+NE GGFKCEC AG
Sbjct: 473 GCMHRCVDHQVGYKCDCHEGYKLSGDGHSCVDVNECEQPGVCSQICVNEIGGFKCECEAG 532

Query: 458 YIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMI 517
           Y++DP + T+CKA+EGHASLL AR+HDIRKI+LDH EMT+IVN+TKSATA+DFVFRTGMI
Sbjct: 533 YMRDPRNHTRCKASEGHASLLLARRHDIRKIALDHMEMTSIVNNTKSATALDFVFRTGMI 592

Query: 518 FWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
           FWSD++ + IYKAPIDEG+E+TVV+++    +DGLAVDWIY+H+Y+TD HK TIEL NF+
Sbjct: 593 FWSDVTTQSIYKAPIDEGNEKTVVLKKSSVTSDGLAVDWIYNHVYYTDTHKCTIELTNFD 652

Query: 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
           G M KVL+   LD PRS+AL+PI+GWMYWSDWG + +IERAGMDGSHR  +I  D+KWPN
Sbjct: 653 GNMGKVLIEDALDIPRSIALDPIEGWMYWSDWGASPRIERAGMDGSHRTTIINYDVKWPN 712

Query: 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
           G+TLDLV++R+YWVD KLN ISS +Y+G  RR +LYS + L HPFSI+TFED++YW+DW 
Sbjct: 713 GITLDLVRKRIYWVDGKLNIISSANYDGSQRRQILYSTEYLRHPFSITTFEDYIYWTDWD 772

Query: 698 QKAIYKANKFTGDNLTAITGVHQTHEPL 725
           ++ ++KANKFTG+++  IT VH    P+
Sbjct: 773 KQTVFKANKFTGEDVEPITAVHMLQHPM 800

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2764400|emb|CAA03855.1| lipophorin receptor [Locusta migratoria]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/719 (50%), Positives = 439/719 (61%), Gaps = 141/719 (19%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKS--CK-NRTCQASEFRCGNNRCIPN 150
           C   +F C +  G C+PLTWMC+   DC D SDE +  CK  R C   EFRC N RCIP+
Sbjct: 48  CTLRQFQCAN--GHCIPLTWMCEGEDDCGDNSDETNAVCKETRECTDQEFRCNNGRCIPS 105

Query: 151 HWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLK 210
           HWQCD E DC+D SDE P++C                     Q    S + +C       
Sbjct: 106 HWQCDNEKDCADGSDEIPQVCQ--------------------QKKCASDEFTC------- 138

Query: 211 LLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEF 270
                                 R   G C+P  W+CD   DC DG DEK C+ETCRSDEF
Sbjct: 139 ----------------------RTAPGECVPLAWMCDDNPDCSDGSDEKACNETCRSDEF 176

Query: 271 TCANGNCIQRIWL-----------------------------------------CDGDDD 289
           TCAN  CIQ+ W+                                         CDGD D
Sbjct: 177 TCANSKCIQQRWVCDRDDDCGDGSDEKDCPKTTCAPETEFNCSDNNMCITARWQCDGDLD 236

Query: 290 CKDGSDEKSCQ---PVK-CTAGQFTCQNLTACIPDKWVCDGD------TVEKDSTCPNAT 339
           C+DGSDE+ C    P+  C   +F C +   CI   WVCDGD      + E  S C N T
Sbjct: 237 CQDGSDEQGCTSTGPISHCLPREFECLDRMTCIHQSWVCDGDRDCPDGSDEDVSRCHNMT 296

Query: 340 PMNSSVRIEGAVAFIPPGFAM---------------------------------AMKIVR 366
                 +    +    PG                                     M I  
Sbjct: 297 CRPDQFQCRNRICI--PGHLHCSGHADCSDGSDEENCTSPVPKCDPKTEFECGGGMCIPL 354

Query: 367 TAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHT 426
           ++VCDK PDCP  +DE   KCG +ECA +NGGC  KCVD P GY C+C  GYKL  N HT
Sbjct: 355 SSVCDKKPDCPNWEDEPQEKCGKNECAVNNGGCSQKCVDTPAGYYCDCLPGYKLVDN-HT 413

Query: 427 CIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIR 486
           C D++ECE PG+CSQ C+NEKG FKC+CV GY++DP  PT+CKA EGHASLLFAR+HDIR
Sbjct: 414 CDDVNECEIPGACSQECINEKGTFKCQCVEGYLRDPRDPTRCKAMEGHASLLFARRHDIR 473

Query: 487 KISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK 546
           KISLDHHEMTAIVN TKSATA+DFVFRTGMIFWSD+S++KIYKAPIDEGSERTVVI++  
Sbjct: 474 KISLDHHEMTAIVNDTKSATALDFVFRTGMIFWSDVSDQKIYKAPIDEGSERTVVIKDQL 533

Query: 547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYW 606
           T +DGLAVDWIY+HIYWTD  KNTIELANFEG MRK+L++  L+EPR++A+NP+DGWMYW
Sbjct: 534 TTSDGLAVDWIYNHIYWTDTGKNTIELANFEGNMRKILIKDELEEPRAIAVNPLDGWMYW 593

Query: 607 SDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG 666
           +DWG N KIERAGMDG+HR  ++  ++KWPNGLTLDLV+RR+YWVDAKLN ISSC+Y+G 
Sbjct: 594 TDWGTNPKIERAGMDGAHRQTIVSYEVKWPNGLTLDLVKRRVYWVDAKLNVISSCNYDGS 653

Query: 667 NRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPL 725
            RR++LYSP+ L HPFS++TFEDW+YW+DW ++A+YKANKF G +++AIT  H    P+
Sbjct: 654 GRRVILYSPEHLQHPFSVTTFEDWVYWTDWDKQAVYKANKFNGKDVSAITATHMLQNPM 712

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	734
FB|FBgn0066101	1076	LpR1 "Lipophorin receptor 1" [	0.885	0.604	0.495	1.2e-184
FB|FBgn0051092	1064	LpR2 "Lipophorin receptor 2" [	0.911	0.628	0.477	5.4e-182
ZFIN|ZDB-GENE-040426-803	866	vldlr "very low density lipopr	0.881	0.747	0.403	6.1e-142
RGD|3963	873	Vldlr "very low density lipopr	0.871	0.733	0.403	1e-139
UNIPROTKB|P98166	873	Vldlr "Very low-density lipopr	0.871	0.733	0.403	1e-139
MGI|MGI:98935	873	Vldlr "very low density lipopr	0.871	0.733	0.403	4.4e-139
UNIPROTKB|E7CXS1	845	Vldlr "Uncharacterized protein	0.866	0.752	0.404	1.9e-138
UNIPROTKB|P98155	873	VLDLR "Very low-density lipopr	0.866	0.728	0.402	2.4e-138
UNIPROTKB|P98165	863	VLDLR "Very low-density lipopr	0.862	0.733	0.404	3.5e-137
UNIPROTKB|F1P783	873	VLDLR "Uncharacterized protein	0.866	0.728	0.399	1.5e-136

FB|FBgn0066101 LpR1 "Lipophorin receptor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 1791 (635.5 bits), Expect = 1.2e-184, P = 1.2e-184
 Identities = 341/688 (49%), Positives = 439/688 (63%)

Query:    56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTW 113
             +S  FRC  G CIP+ W CD ++DC DG DE    C    C   EF C++   +C+P +W
Sbjct:   180 SSDQFRCGNGNCIPNKWRCDQESDCADGSDEANELCMNA-CPNNEFKCQTVD-QCIPRSW 237

Query:   114 MCDDNPDCSDGSDEKSCKNRTCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
             +CD + DC D SDE  C+ RTC   E+ C  G  +C+P  W CD   DCSD SDE    C
Sbjct:   238 LCDGSNDCRDKSDEAHCRARTCSPDEYACKSGEGQCVPLAWMCDQSKDCSDGSDE--HNC 295

Query:   172 NGVNHCAAVNGHCSH-LCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
             N    C A    C +  C+       H       C +G     D   C      PC +  
Sbjct:   296 NQT--CRADEFTCGNGRCIQKRWKCDHDDD----CGDG----SDEKECPVV---PCDSVA 342

Query:   231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET------CRSDEFTCANG-NCIQRIWL 283
                CT G CI   WVCDG  DC DG DE+ C         C S E+ C +   C+   WL
Sbjct:   343 EHTCTNGACIAKRWVCDGDPDCSDGSDERSCANVTKTTTPCLSHEYQCKDRITCLHHSWL 402

Query:   284 XXXXXX--XXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPM 341
                              C+ V C A QF C +  +CIP    C+GD    D +      +
Sbjct:   403 CDGDRDCPDGDDEHTANCKNVTCRADQFQCGD-RSCIPGHLTCNGDKDCADGSDERDCGL 461

Query:   342 NSSVRI-EG---AVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNG 397
             + S+ I +G   A +    G    + + +  VCDK  DCP  +DE   KCG++ECA  NG
Sbjct:   462 SLSLGINQGGCNATSEFDCGGGQCVPLSK--VCDKRKDCPDGEDEPAGKCGINECASKNG 519

Query:   398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG 457
             GC+H+C+DL VG+ CEC+EGYKLS ++  C DI+ECE PG CSQIC+NE GGFKCEC AG
Sbjct:   520 GCMHQCIDLKVGHHCECHEGYKLSPDKRNCQDINECEVPGKCSQICVNEIGGFKCECEAG 579

Query:   458 YIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMI 517
             Y++DP + T+CKA+EGHASLL AR+HDIRKI+LDH EMT+IVNSTK+ATA+DFVFRTGMI
Sbjct:   580 YMRDPKNHTRCKASEGHASLLLARRHDIRKIALDHMEMTSIVNSTKAATALDFVFRTGMI 639

Query:   518 FWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
             FWSD++ + IYKAPIDEG+E+TVV+ +    +DGLAVDWIY+H+Y+TD HK TIEL NFE
Sbjct:   640 FWSDVTTQSIYKAPIDEGNEKTVVLTKSSVTSDGLAVDWIYNHVYFTDTHKCTIELTNFE 699

Query:   578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
             G+M KVLV+  LD PRS+AL+PI+GWMYWSDWG + +IERAGMDGSHR  +I  D+KWPN
Sbjct:   700 GSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASPRIERAGMDGSHRTTIISYDVKWPN 759

Query:   638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
             G+TLDLV++R+YWVD KLN ISS +Y+G  R  VLYS + L HPFSI+TFED +YW+DW 
Sbjct:   760 GITLDLVKKRIYWVDGKLNVISSANYDGSQRSQVLYSGEYLRHPFSITTFEDNVYWTDWD 819

Query:   698 QKAIYKANKFTGDNLTAITGVHQTHEPL 725
             ++A++KANKFTG+++  +T +H    P+
Sbjct:   820 KQAVFKANKFTGEDVEPVTAMHMLQHPM 847

GO:0042953 "lipoprotein transport" evidence=ISS

GO:0008203 "cholesterol metabolic process" evidence=ISS

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004872 "receptor activity" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IEP;IMP

FB|FBgn0051092 LpR2 "Lipophorin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 1766 (626.7 bits), Expect = 5.4e-182, P = 5.4e-182
 Identities = 340/712 (47%), Positives = 449/712 (63%)

Query:    31 IDDKIGVDYDTFTSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK--K 88
             +  KIG   D     + Y     C +   F+C+ G CIP  +VCDG +DCPD  DE+  +
Sbjct:   175 VSGKIGTPLDISLGLSNY-----C-DEKQFQCSTGECIPIRFVCDGSSDCPDHSDERLEE 228

Query:    89 CQ--KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKS--CKNRTCQASEFRC-- 142
             C+  +  C QE+F C +  G+C+P  W+CD   DC+DGSDE +  C++ TC   EF C  
Sbjct:   229 CKFTESTCSQEQFRCGN--GKCIPRRWVCDRENDCADGSDESTSQCRSHTCSPEEFACKS 286

Query:   143 GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSH-LCLPAPQINAHSPKI 201
             G   CIP  W CD   DC D SDE    CN    C +    C +  C+     N      
Sbjct:   287 GEGECIPLSWMCDQNKDCRDGSDE--AQCNRT--CRSDEFTCGNGRCIQ----NRFKCDD 338

Query:   202 SCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE-KK 260
                C +G     D   C E     C  S  F C  G CIP+ WVCDG +DC +G DE + 
Sbjct:   339 DDDCGDG----SDEKNCGEKAK--C-GSNFFACKSGPCIPNQWVCDGDSDCRNGEDEMQN 391

Query:   261 CHET----CRSDEFTCANG-NCIQRIWLXXXXXX--XXXXXXXXXCQPVKCTAGQFTCQN 313
             C  +    C++ EF C++   C+ + W+                 C  V C   QF C N
Sbjct:   392 CTVSLLNFCQAGEFQCSDRITCLHKSWVCDGEADCPDGEDESQSNCLKVSCRPDQFQC-N 450

Query:   314 LTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKH 373
               +CI     C+G     D +      ++++ R   A      G  +   I    VC++ 
Sbjct:   451 DQSCIAGHLTCNGKRDCADGSDEIMCDISATPRTCNATTEFDCGGGLC--IPNAKVCNRR 508

Query:   374 PDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
              DCP  +DE   KCG++EC+  NGGC+H+CV+L VGY CEC++GYKL +++HTC+DIDEC
Sbjct:   509 KDCPNGEDEPAGKCGINECSSKNGGCMHQCVNLEVGYRCECHDGYKLGADQHTCVDIDEC 568

Query:   434 ETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHH 493
             ETPG CSQ+C+NE G FKCEC AGY++   + T+CKA+EGHASLL AR+HDIRKI+LD  
Sbjct:   569 ETPGICSQVCVNEIGAFKCECEAGYMRLLKNHTRCKASEGHASLLLARRHDIRKIALDRP 628

Query:   494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA 553
             EMT+IVNSTK+ATA+DFVFRTGMIFWSD++ + IYKAPIDEG++RTVV+ +    +DGLA
Sbjct:   629 EMTSIVNSTKAATALDFVFRTGMIFWSDVATQSIYKAPIDEGNDRTVVLTKSSVTSDGLA 688

Query:   554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA 613
             VDWIY+H+Y+TD HK TIEL NFEG+M KVLV+  LD PRS+AL+PI+GWMYWSDWG + 
Sbjct:   689 VDWIYNHVYFTDTHKCTIELTNFEGSMGKVLVKDSLDIPRSIALDPIEGWMYWSDWGASP 748

Query:   614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY 673
             +IERAGMDG+HR  +I  D+KWPNG+TLDLVQ+RLYWVD KLN ISS +Y+G  R  VLY
Sbjct:   749 RIERAGMDGTHRTAIITYDVKWPNGITLDLVQKRLYWVDGKLNTISSSNYDGSQRHQVLY 808

Query:   674 SPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPL 725
             S + L HPFSI+TFED++YW+DW ++A++KANKF G ++  +T  H    P+
Sbjct:   809 SGEYLRHPFSITTFEDYVYWTDWDKQAVFKANKFNGMDVEPVTATHMLEHPM 860

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-040426-803 vldlr "very low density lipoprotein receptor" [Danio rerio (taxid:7955)]

 Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
 Identities = 284/703 (40%), Positives = 393/703 (55%)

Query:    54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTW 113
             C  S  F+C  G CIPS W CDG  DC DG DE  C ++ C + +F CRS  G+C+P  W
Sbjct:    29 CEQS-QFQCGNGRCIPSVWQCDGDMDCSDGSDETSCVRKTCAEVDFVCRS--GQCIPKRW 85

Query:   114 MCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPE 169
              CD  PDC DGSDE  + C  RTC+ +EF CG  + +CIP  W+CDGE DC +  DE   
Sbjct:    86 QCDGEPDCEDGSDESIEMCHTRTCRVNEFSCGVGSTQCIPVFWKCDGEKDCDNGEDEIN- 144

Query:   170 MCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCR 227
              C  +  CA +   CS   C+    + N         C +G     D   CA +   P  
Sbjct:   145 -CGNIT-CAPLEFTCSSGRCVSRKFVCNGEDD-----CGDG----SDEQDCAPSSCSPSE 193

Query:   228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC-HET-----CRSDEFTCANGNCIQ 279
                   C    CIP +W+CD   DC D  DE  ++C H       C   E  C +G CI 
Sbjct:   194 ----IPCGNNTCIPRSWLCDDDVDCQDQSDESPERCGHNPTPPAKCSPSEMQCGSGECIH 249

Query:   280 RIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDG--DTVE--KDSTC 335
             R W                C    C   QF C +  +CI     C+G  D V+   +  C
Sbjct:   250 RKWRCDGDPDCKDGSDEKNCSARNCRPDQFKCDD-GSCIHGSRQCNGFRDCVDGTDEVNC 308

Query:   336 PNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKD 395
              N T  NSS + +        G  + M    + VC+K  DCP   DE   +C ++EC  +
Sbjct:   309 KNLTQCNSSDQFK-----CRSGECIEM----SKVCNKVRDCPDWSDEPIKECNMNECLIN 359

Query:   396 NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECV 455
             NGGC H C DL +G+ C+C  G +L  +R TC D++EC  PG CSQIC+N KGG+KCEC 
Sbjct:   360 NGGCSHICRDLTIGFECDCTPGLQLI-DRKTCGDVNECLNPGICSQICINLKGGYKCECH 418

Query:   456 AGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTG 515
              GY  DP     CKA      L+F  + DIRK+ L+  E T IV   ++  A+D  F   
Sbjct:   419 NGYQMDPTTGV-CKAVGKEPCLIFTNRRDIRKLGLERREYTQIVEQLRNTVALDADFIQQ 477

Query:   516 MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575
             MIFW+D+ +K I+   +D+  E    + +D  +  G+AVDWIY +IYW+D    +I +AN
Sbjct:   478 MIFWADLGQKAIFSTVLDKQDESHKKVIDDVQMPVGIAVDWIYKNIYWSDLGSKSITVAN 537

Query:   576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW 635
             F GT +KVL  S L EP S+A++P+ G++YWSDWG+ AKIE++GM+G+ R +++ +DI+W
Sbjct:   538 FNGTKKKVLFNSGLKEPASIAVDPLSGFLYWSDWGEPAKIEKSGMNGNDRQVLVETDIQW 597

Query:   636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSD 695
             PNG+TLDL++ RLYWVD+KL+ + S D NG NRR VL SP  L+HPF+++ FED ++W+D
Sbjct:   598 PNGITLDLIKGRLYWVDSKLHMLCSVDLNGDNRRKVLQSPDYLAHPFALTVFEDRVFWTD 657

Query:   696 WQQKAIYKANKFTGDNLTAI-TGVHQT------HEPLNSPGTN 731
              + +AIY ANKFTG ++T + + +++       HE +   GTN
Sbjct:   658 GENEAIYGANKFTGSDVTLLASNLNEPQDIIVYHELIQLSGTN 700

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3963 Vldlr "very low density lipoprotein receptor" [Rattus norvegicus (taxid:10116)]

 Score = 1349 (479.9 bits), Expect = 1.0e-139, Sum P(2) = 1.0e-139
 Identities = 277/687 (40%), Positives = 380/687 (55%)

Query:    46 TVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
             T   +   C +S+ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C++  
Sbjct:    25 TASGKKAKC-DSSQFQCTNGRCITLLWKCDGDEDCTDGSDEKNCVKKTCAESDFVCKN-- 81

Query:   106 GECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCS 161
             G+CVP  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC 
Sbjct:    82 GQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPESWRCDGENDCD 141

Query:   162 DKSDEDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCA 219
             +  DE  E C  +  C+A    CS   C+    + N         C +G     D L CA
Sbjct:   142 NGEDE--ENCGNIT-CSADEFTCSSGRCVSRNFVCNGQDD-----CDDG----SDELDCA 189

Query:   220 EAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFT 271
                  P   +  F+C    CIP +WVCD   DC D  DE  ++C      H  C + E  
Sbjct:   190 P----PTCGAHEFQCRTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQ 245

Query:   272 CANGNCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEK 331
             C +G CI + W                C    C   QF C++  +CI     C+G    +
Sbjct:   246 CGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGI---R 301

Query:   332 DSTCPNATPMNSSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCG 388
             D  C + +     V  +     + PG         I  T VCD+  DC    DE   +C 
Sbjct:   302 D--CVDGS---DEVNCKNVNQCLGPGKFKCRSGECIDITKVCDQEQDCRDWSDEPLKECH 356

Query:   389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
             ++EC  +NGGC H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KG
Sbjct:   357 INECLVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKG 415

Query:   449 GFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAI 508
             G+KCEC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+
Sbjct:   416 GYKCECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVAL 474

Query:   509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568
             D       +FW+D+S+K I+ A ID+   R   + ++      +AVDW+Y  IYWTDA  
Sbjct:   475 DADIAAQKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAAS 534

Query:   569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV 628
              TI +A  +GT RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  +
Sbjct:   535 KTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPL 594

Query:   629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE 688
             +  DI+WPNG+TLDLV+ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FE
Sbjct:   595 VTEDIQWPNGITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFE 654

Query:   689 DWLYWSDWQQKAIYKANKFTGDNLTAI 715
             D +YW D + +A+Y ANKFTG  L  +
Sbjct:   655 DRVYWIDGENEAVYGANKFTGSELATL 681

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0001666 "response to hypoxia" evidence=IEP

GO:0001948 "glycoprotein binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0007166 "cell surface receptor signaling pathway" evidence=TAS

GO:0007507 "heart development" evidence=IEP

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0009986 "cell surface" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0021987 "cerebral cortex development" evidence=IEP

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA;ISO;ISS

GO:0030296 "protein tyrosine kinase activator activity" evidence=TAS

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA;ISO

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA;ISO

GO:0034437 "glycoprotein transporter activity" evidence=IEA;ISO

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA;ISO;ISS

GO:0038025 "reelin receptor activity" evidence=IEA;ISO

GO:0038026 "reelin-mediated signaling pathway" evidence=ISO

GO:0042149 "cellular response to glucose starvation" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0045177 "apical part of cell" evidence=IDA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA;ISO

GO:0048306 "calcium-dependent protein binding" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=TAS

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071347 "cellular response to interleukin-1" evidence=IEP

GO:0071456 "cellular response to hypoxia" evidence=IDA

GO:1900006 "positive regulation of dendrite development" evidence=IEA;ISO

UNIPROTKB|P98166 Vldlr "Very low-density lipoprotein receptor" [Rattus norvegicus (taxid:10116)]

 Score = 1349 (479.9 bits), Expect = 1.0e-139, Sum P(2) = 1.0e-139
 Identities = 277/687 (40%), Positives = 380/687 (55%)

Query:    46 TVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
             T   +   C +S+ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C++  
Sbjct:    25 TASGKKAKC-DSSQFQCTNGRCITLLWKCDGDEDCTDGSDEKNCVKKTCAESDFVCKN-- 81

Query:   106 GECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCS 161
             G+CVP  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC 
Sbjct:    82 GQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPESWRCDGENDCD 141

Query:   162 DKSDEDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCA 219
             +  DE  E C  +  C+A    CS   C+    + N         C +G     D L CA
Sbjct:   142 NGEDE--ENCGNIT-CSADEFTCSSGRCVSRNFVCNGQDD-----CDDG----SDELDCA 189

Query:   220 EAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFT 271
                  P   +  F+C    CIP +WVCD   DC D  DE  ++C      H  C + E  
Sbjct:   190 P----PTCGAHEFQCRTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQ 245

Query:   272 CANGNCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEK 331
             C +G CI + W                C    C   QF C++  +CI     C+G    +
Sbjct:   246 CGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGI---R 301

Query:   332 DSTCPNATPMNSSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCG 388
             D  C + +     V  +     + PG         I  T VCD+  DC    DE   +C 
Sbjct:   302 D--CVDGS---DEVNCKNVNQCLGPGKFKCRSGECIDITKVCDQEQDCRDWSDEPLKECH 356

Query:   389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
             ++EC  +NGGC H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KG
Sbjct:   357 INECLVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKG 415

Query:   449 GFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAI 508
             G+KCEC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+
Sbjct:   416 GYKCECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVAL 474

Query:   509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568
             D       +FW+D+S+K I+ A ID+   R   + ++      +AVDW+Y  IYWTDA  
Sbjct:   475 DADIAAQKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAAS 534

Query:   569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV 628
              TI +A  +GT RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  +
Sbjct:   535 KTISVATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPL 594

Query:   629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE 688
             +  DI+WPNG+TLDLV+ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FE
Sbjct:   595 VTEDIQWPNGITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFE 654

Query:   689 DWLYWSDWQQKAIYKANKFTGDNLTAI 715
             D +YW D + +A+Y ANKFTG  L  +
Sbjct:   655 DRVYWIDGENEAVYGANKFTGSELATL 681

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:98935 Vldlr "very low density lipoprotein receptor" [Mus musculus (taxid:10090)]

 Score = 1343 (477.8 bits), Expect = 4.4e-139, Sum P(2) = 4.4e-139
 Identities = 277/687 (40%), Positives = 381/687 (55%)

Query:    46 TVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
             T   +   C +S+ F+CT G CI   W CDG  DC DG DEK C K+ C + +F C++  
Sbjct:    25 TASGKKAKC-DSSQFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAESDFVCKN-- 81

Query:   106 GECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCS 161
             G+CVP  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC 
Sbjct:    82 GQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGENDCD 141

Query:   162 DKSDEDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCA 219
             +  DE  E C  +  C+A    CS   C+    + N         C +G     D L CA
Sbjct:   142 NGEDE--ENCGNIT-CSADEFTCSSGRCVSRNFVCNGQDD-----CDDG----SDELDCA 189

Query:   220 EAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFT 271
                  P   +  F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E  
Sbjct:   190 P----PTCGAHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCPTSEIQ 245

Query:   272 CANGNCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDG--DTV 329
             C +G CI + W                C    C   QF C++  +CI     C+G  D V
Sbjct:   246 CGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGIRDCV 304

Query:   330 EKDSTCPNATPMNSSVRIEGAVAF-IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCG 388
             +      N   +N  +   G   F    G  + M    + VCD+  DC    DE   +C 
Sbjct:   305 DGSDEV-NCKNVNQCL---GPGKFKCRSGECIDM----SKVCDQEQDCRDWSDEPLKECH 356

Query:   389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
             ++EC  +NGGC H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KG
Sbjct:   357 INECLVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKG 415

Query:   449 GFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAI 508
             G+KCEC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+
Sbjct:   416 GYKCECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVAL 474

Query:   509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK 568
             D       +FW+D+S+K I+ A ID+   R   + ++      +AVDW+Y  IYWTDA  
Sbjct:   475 DADIAAQKLFWADLSQKAIFSASIDDKVGRHFKMIDNVYNPAAIAVDWVYKTIYWTDAAS 534

Query:   569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV 628
              TI +A  +G  RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  +
Sbjct:   535 KTISVATLDGAKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPL 594

Query:   629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE 688
             +  DI+WPNG+TLDLV+ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FE
Sbjct:   595 VTEDIQWPNGITLDLVKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFE 654

Query:   689 DWLYWSDWQQKAIYKANKFTGDNLTAI 715
             D +YW D + +A+Y ANKFTG  L  +
Sbjct:   655 DRVYWIDGENEAVYGANKFTGSELATL 681

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0001948 "glycoprotein binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=IDA

GO:0005634 "nucleus" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034189 "very-low-density lipoprotein particle binding" evidence=ISO

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=ISO

GO:0034437 "glycoprotein transporter activity" evidence=ISO

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=ISO

GO:0038025 "reelin receptor activity" evidence=IGI

GO:0038026 "reelin-mediated signaling pathway" evidence=IGI

GO:0045177 "apical part of cell" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=IGI

GO:0048306 "calcium-dependent protein binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0071456 "cellular response to hypoxia" evidence=ISO

GO:1900006 "positive regulation of dendrite development" evidence=IGI

UNIPROTKB|E7CXS1 Vldlr "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1337 (475.7 bits), Expect = 1.9e-138, Sum P(2) = 1.9e-138
 Identities = 276/683 (40%), Positives = 378/683 (55%)

Query:    50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
             R   C  S  F+CT G CI   W CDG  DC DG DEK C K+ C + +F C  S G+CV
Sbjct:    29 RKAKCEPS-QFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAESDFVC--SNGQCV 85

Query:   110 PLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSD 165
             P  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC   S 
Sbjct:    86 PNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISCGARSTQCIPVSWRCDGENDCD--SG 143

Query:   166 EDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCAEAGS 223
             ED E C  +  C+     CS   C+    + N         C +G     D L CA    
Sbjct:   144 EDEENCGNIT-CSPDEFTCSSGRCISRNFVCNGQDD-----CSDG----SDELDCAP--- 190

Query:   224 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANG 275
              P   +  F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E  C +G
Sbjct:   191 -PTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSG 249

Query:   276 NCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTC 335
              CI + W                C    C   QF C++  +CI     C+G    +D  C
Sbjct:   250 ECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGI---RD--C 303

Query:   336 PNATPMNSSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCGVDEC 392
              + +     V  +     + PG         I  + VC++  DC    DE   +C V+EC
Sbjct:   304 VDGS---DEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHVNEC 360

Query:   393 AKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC 452
               +NGGC H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KC
Sbjct:   361 LVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKGGYKC 419

Query:   453 ECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVF 512
             EC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+D   
Sbjct:   420 ECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADI 478

Query:   513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
                 +FW+D+S+K I+ A ID+   R V + ++      +AVDW+Y  IYWTDA   TI 
Sbjct:   479 AAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTIS 538

Query:   573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD 632
             +A  +G+ RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++ +D
Sbjct:   539 VATLDGSKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRALVTTD 598

Query:   633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY 692
             I+WPNG+TLDL++ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +Y
Sbjct:   599 IQWPNGITLDLIKGRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVY 658

Query:   693 WSDWQQKAIYKANKFTGDNLTAI 715
             W D + +A+Y ANKFTG  L  +
Sbjct:   659 WIDGENEAVYGANKFTGSELATL 681

GO:1900006 "positive regulation of dendrite development" evidence=IEA

GO:0048306 "calcium-dependent protein binding" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0038025 "reelin receptor activity" evidence=IEA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IEA

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0001948 "glycoprotein binding" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98155 VLDLR "Very low-density lipoprotein receptor" [Homo sapiens (taxid:9606)]

 Score = 1336 (475.4 bits), Expect = 2.4e-138, Sum P(2) = 2.4e-138
 Identities = 275/683 (40%), Positives = 377/683 (55%)

Query:    50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
             R   C  S  F+CT G CI   W CDG  DC DG DEK C K+ C + +F C +  G+CV
Sbjct:    29 RKAKCEPS-QFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNN--GQCV 85

Query:   110 PLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSD 165
             P  W CD +PDC DGSDE  + C  RTC+  E  CG  + +CIP  W+CDGE DC   S 
Sbjct:    86 PSRWKCDGDPDCEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCD--SG 143

Query:   166 EDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCAEAGS 223
             ED E C  +  C+     CS   C+    + N         C +G     D L CA    
Sbjct:   144 EDEENCGNIT-CSPDEFTCSSGRCISRNFVCNGQDD-----CSDG----SDELDCAP--- 190

Query:   224 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANG 275
              P   +  F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E  C +G
Sbjct:   191 -PTCGAHEFQCSTSSCIPISWVCDDDADCSDQSDESLEQCGRQPVIHTKCPASEIQCGSG 249

Query:   276 NCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTC 335
              CI + W                C    C   QF C++  +CI     C+G    +D  C
Sbjct:   250 ECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGI---RD--C 303

Query:   336 PNATPMNSSVRIEGAVAFIPPGFAMAMK---IVRTAVCDKHPDCPLMQDEDPTKCGVDEC 392
              + +     V  +     + PG         I  + VC++  DC    DE   +C ++EC
Sbjct:   304 VDGS---DEVNCKNVNQCLGPGKFKCRSGECIDISKVCNQEQDCRDWSDEPLKECHINEC 360

Query:   393 AKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC 452
               +NGGC H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KC
Sbjct:   361 LVNNGGCSHICKDLVIGYECDCAAGFELI-DRKTCGDIDECQNPGICSQICINLKGGYKC 419

Query:   453 ECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVF 512
             EC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+D   
Sbjct:   420 ECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADI 478

Query:   513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
                 +FW+D+S+K I+ A ID+   R V + ++      +AVDW+Y  IYWTDA   TI 
Sbjct:   479 AAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDAASKTIS 538

Query:   573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD 632
             +A  +GT RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++ +D
Sbjct:   539 VATLDGTKRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTAD 598

Query:   633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY 692
             I+WPNG+TLDL++ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +Y
Sbjct:   599 IQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVY 658

Query:   693 WSDWQQKAIYKANKFTGDNLTAI 715
             W D + +A+Y ANKFTG  L  +
Sbjct:   659 WIDGENEAVYGANKFTGSELATL 681

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEA

GO:0045860 "positive regulation of protein kinase activity" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

GO:0007613 "memory" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030229 "very-low-density lipoprotein particle receptor activity" evidence=IDA

GO:0034447 "very-low-density lipoprotein particle clearance" evidence=IDA

GO:0034185 "apolipoprotein binding" evidence=ISS;IDA

GO:0001948 "glycoprotein binding" evidence=IPI

GO:0034436 "glycoprotein transport" evidence=IDA

GO:0034437 "glycoprotein transporter activity" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

GO:0048306 "calcium-dependent protein binding" evidence=IPI

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0038026 "reelin-mediated signaling pathway" evidence=ISS

GO:1900006 "positive regulation of dendrite development" evidence=ISS

GO:0038025 "reelin receptor activity" evidence=ISS

GO:0034189 "very-low-density lipoprotein particle binding" evidence=IDA

UNIPROTKB|P98165 VLDLR "Very low-density lipoprotein receptor" [Gallus gallus (taxid:9031)]

 Score = 1326 (471.8 bits), Expect = 3.5e-137, Sum P(2) = 3.5e-137
 Identities = 275/680 (40%), Positives = 372/680 (54%)

Query:    54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTW 113
             C  S  F+C+ G CIP  W CDG  DC DG DE  C K+ C + +F C S  G+CVP  W
Sbjct:    51 CEES-QFQCSNGRCIPLLWKCDGDEDCSDGSDESACVKKTCAESDFVCNS--GQCVPNRW 107

Query:   114 MCDDNPDCSDGSDEKS--CKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPE 169
              CD +PDC DGSDE +  C  RTC+ +E  CG  + +CIP  W+CDGE DC   S ED E
Sbjct:   108 QCDGDPDCEDGSDESAELCHMRTCRVNEISCGPQSTQCIPVSWKCDGEKDCD--SGEDEE 165

Query:   170 MCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCR 227
              C  V  C+A    CS   C+    + N         C +G     D L CA     P  
Sbjct:   166 NCGNVT-CSAAEFTCSSGQCISKSFVCNGQDD-----CSDG----SDELECAP----PTC 211

Query:   228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCHET------CRSDEFTCANGNCIQ 279
                 F+C    CIP +WVCD   DC D  DE  ++C         C + E  C +G CI 
Sbjct:   212 GVHEFQCKSSTCIPISWVCDDDADCSDHSDESLEQCGRQPAPPVKCSTSEVQCGSGECIH 271

Query:   280 RIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNAT 339
             + W                C    C   QF C++   CI     C+G     D T  +  
Sbjct:   272 KKWRCDGDPDCKDGSDEINCPSRTCRPDQFRCEDGN-CIHGSRQCNGVRDCLDGT--DEA 328

Query:   340 PMNSSVRIEGAVAF-IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGG 398
               N+ ++  G   F    G  + +      VC+ H DC    DE   +C ++EC  +NGG
Sbjct:   329 NCNNVIQCSGPGKFKCRSGECIDIN----KVCNHHGDCKDWSDEPLKECNINECLVNNGG 384

Query:   399 CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGY 458
             C H C DL +GY C+C  G++L  +R TC DIDEC+ PG CSQIC+N KGG+KCEC  GY
Sbjct:   385 CSHICRDLVIGYECDCPAGFELV-DRRTCGDIDECQNPGICSQICINLKGGYKCECSRGY 443

Query:   459 IKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIF 518
               D      CKA      L+F  + DIRKI L+  E   +V   ++  A+D       ++
Sbjct:   444 QMDLATGV-CKAVGKEPCLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAEQKLY 502

Query:   519 WSDISEKKIYKAPIDEGSE---RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN 575
             W+D S+K I+ A ID   +    T +++   + A G+AVDWIY +IYWTD+   TI +A+
Sbjct:   503 WADFSQKAIFSASIDTRDKVGTHTRILDNIHSPA-GIAVDWIYKNIYWTDSSAKTISVAS 561

Query:   576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW 635
               G  RKVL  S L EP S+A++P+ G+MYWSDWG+ AKIE+AGM+G  R  ++ ++I+W
Sbjct:   562 LNGKKRKVLFLSELREPASIAVDPLSGFMYWSDWGEPAKIEKAGMNGFDRQQLVTTEIQW 621

Query:   636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSD 695
             PNG+ LDLV+ RLYW+D+KL+ +SS D NG +RRLVL S   L HP +++ FED ++W D
Sbjct:   622 PNGIALDLVKSRLYWLDSKLHMLSSVDLNGQDRRLVLKSHMFLPHPLALTIFEDRVFWID 681

Query:   696 WQQKAIYKANKFTGDNLTAI 715
              + +A+Y ANKFTG  L  +
Sbjct:   682 GENEAVYGANKFTGAELVTL 701

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034361 "very-low-density lipoprotein particle" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0021517 "ventral spinal cord development" evidence=IEP

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0030228 "lipoprotein particle receptor activity" evidence=IC

UNIPROTKB|F1P783 VLDLR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1319 (469.4 bits), Expect = 1.5e-136, Sum P(2) = 1.5e-136
 Identities = 273/683 (39%), Positives = 375/683 (54%)

Query:    50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECV 109
             R   C  S  F+CT G CI   W CDG  DC DG DEK C K+ C + +F C +  G+CV
Sbjct:    29 RKAKCEPS-QFQCTNGRCITLLWKCDGDEDCADGSDEKNCVKKTCAESDFVCNN--GQCV 85

Query:   110 PLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSD 165
             P  W CD +PDC DGSDE  + C  RTC+ +E  CG  + +CIP  W+CDGE DC   S 
Sbjct:    86 PNRWQCDGDPDCEDGSDENPEQCHMRTCRINEISCGARSTQCIPVSWRCDGENDCD--SG 143

Query:   166 EDPEMCNGVNHCAAVNGHCSH-LCLPAPQI-NAHSPKISCACPEGLKLLPDLLMCAEAGS 223
             ED E C  +  C+     CS   C+    + N         C +G     D L CA    
Sbjct:   144 EDEENCGNIT-CSPDEFTCSSGRCISRNFVCNGQDD-----CSDG----SDELDCAP--- 190

Query:   224 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKC------HETCRSDEFTCANG 275
              P      F+C+   CIP +WVCD   DC D  DE  ++C      H  C + E  C +G
Sbjct:   191 -PTCGEHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVMHTKCPASETQCGSG 249

Query:   276 NCIQRIWLXXXXXXXXXXXXXXXCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTC 335
              CI + W                C    C   QF C++  +CI     C+G    +D  C
Sbjct:   250 ECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECED-GSCIHGSRQCNGI---RD--C 303

Query:   336 PNATPMNSSVRIEGAVAFIPPG-F-AMAMKIVRTA-VCDKHPDCPLMQDEDPTKCGVDEC 392
              + +     V  +     + PG F   + + +    VC++  DC    DE   +C V+EC
Sbjct:   304 VDGS---DEVNCKNVNQCLGPGKFKCRSGECIDIGKVCNQEQDCRDWSDEPLKECHVNEC 360

Query:   393 AKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC 452
               +NGGC H C DL +GY C+C  G++L   +  C DIDEC+ PG CSQIC+N KGG+KC
Sbjct:   361 LVNNGGCSHICKDLVIGYECDCAAGFELIDKK-ICGDIDECQNPGICSQICINLKGGYKC 419

Query:   453 ECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVF 512
             EC  GY  D      CKA     SL+F  + DIRKI L+  E   +V   ++  A+D   
Sbjct:   420 ECSRGYQMDLATGV-CKAVGKEPSLIFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADI 478

Query:   513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
                 +FW+D+S+K I+ A ID+   R V + ++      +AVDW+Y  IYWTD    TI 
Sbjct:   479 AAQKLFWADLSQKAIFSASIDDKVGRHVKMIDNVYNPAAIAVDWVYKTIYWTDVASKTIS 538

Query:   573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD 632
             +A  +GT RK L  S L EP S+A++P+ G++YWSDWG+ AKIE+AGM+G  R  ++  D
Sbjct:   539 VATLDGTRRKFLFNSDLREPASIAVDPLSGFVYWSDWGEPAKIEKAGMNGFDRRPLVTVD 598

Query:   633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY 692
             I+WPNG+TLDL++ RLYW+D+KL+ +SS D NG +RR+VL S + L+HP +++ FED +Y
Sbjct:   599 IQWPNGITLDLIKSRLYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVY 658

Query:   693 WSDWQQKAIYKANKFTGDNLTAI 715
             W D + +A+Y ANKFTG  L  +
Sbjct:   659 WIDGENEAVYGANKFTGSELATL 681

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P98155	VLDLR_HUMAN	No assigned EC number	0.4162	0.8596	0.7227	yes	N/A
P98156	VLDLR_MOUSE	No assigned EC number	0.4105	0.8828	0.7422	yes	N/A
P35953	VLDLR_RABIT	No assigned EC number	0.4101	0.8787	0.7388	yes	N/A
P98165	VLDLR_CHICK	No assigned EC number	0.4146	0.8828	0.7508	yes	N/A
P98166	VLDLR_RAT	No assigned EC number	0.4194	0.8623	0.7250	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	734
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	9e-13
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	9e-12
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	3e-11
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	3e-11
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	4e-11
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	2e-10
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	4e-10
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	5e-10
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-10
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	3e-09
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-08
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-08
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	3e-08
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	5e-07
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	2e-06
pfam12662	24	pfam12662, cEGF, Complement Clr-like EGF-like	8e-06
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	1e-04
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	0.003
cd01475	224	cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin	0.003
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	0.003

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 604 MYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLD 642
           +YW+D    A I  A ++GS R  +   D++WPNG+ +D
Sbjct: 3   LYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVD 41

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 59.5 bits (145), Expect = 9e-12
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           C  +EF CANG CI   W+CDG+DDC DGSDE++C
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           TC  DEF C +G CI   W+CDGD DC+DGSDEK+C
Sbjct: 2   TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)

Query: 582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR 625
           + L+ S L  P  LA++ I+G +YW+DWG    IE A +DG++R
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 58.0 bits (141), Expect = 4e-11
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR 668
            ++ S +  PNGL +D ++ RLYW D  L+ I   + +G NR
Sbjct: 2   TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 21/33 (63%), Positives = 24/33 (72%)

Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
           C  +EFRC N RCIP+ W CDGE DC D SDE+
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 19/35 (54%), Positives = 22/35 (62%)

Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
            TC   EF+CG+  CIP  W CDG+ DC D SDE 
Sbjct: 1   STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEK 35

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 21/33 (63%), Positives = 22/33 (66%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDE 296
           TC   EF C NG CI   W+CDG DDC DGSDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
           TC   EF+C N RCIP+ W CDG  DC D SDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR 581
            ++       +GLAVDWI   +YWTD   + IE+AN +GT R
Sbjct: 2   TLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 57 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
             FRC  G CIPS+WVCDG++DC DG DE+ C
Sbjct: 3  PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 20/33 (60%), Positives = 24/33 (72%)

Query: 229 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
              FRC  G CIPS+WVCDG++DC DG DE+ C
Sbjct: 3   PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C   EF C +  G C+P +W+CD   DC DGSDE++C
Sbjct: 1   CPPNEFRCAN--GRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 52 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
            C     F+C  G CIP +WVCDG  DC DG DEK C
Sbjct: 1  STCGPDE-FQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 224 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
             C     F+C  G CIP +WVCDG  DC DG DEK C
Sbjct: 1   STCGPDE-FQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 86
              F+C  G CIPS+WVCDG +DC DG DE
Sbjct: 3  PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 258
               F+C  G CIPS+WVCDG +DC DG DE
Sbjct: 3   PPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           CG +EF C S  GEC+P++W+CD +PDC DGSDEK+C
Sbjct: 3   CGPDEFQCGS--GECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
           C   EF C +  G C+P +W+CD   DC DGSDE
Sbjct: 2   CPPGEFQCDN--GRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 409 GYMCECNEGYKLSSNRHTCIDIDE 432
            Y C C  GY+LS +  TC DIDE
Sbjct: 1   SYTCSCPPGYQLSGDGRTCEDIDE 24

cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 429 DIDECETPGSCSQ--ICLNEKGGFKCECVAGYIKDPH 463
           DIDEC +   C     C+N  G ++CEC  GY    +
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN 37

Length = 39

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 429 DIDECETPGSCS--QICLNEKGGFKCECVAGYI 459
           DIDEC +   C     C+N  G ++C C  GY 
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYT 33

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 560 HIYWTDA-HKNTIELANFEGTMRKVLVRSYLDEPRSLALNP 599
            +YWTD+  + +I +A+  G+ R+ L    L  P  +A++P
Sbjct: 2   RLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
             D CA  +  C   C+  P  Y+C C EGY L  +
Sbjct: 186 VPDLCATLSHVCQQVCISTPGSYLCACTEGYALLED 221

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 429 DIDECETPG-SCSQ--ICLNEKGGFKCECVAGY 458
           D+DEC     +C    +C+N  G F+C C  GY
Sbjct: 1   DVDECADGTHNCPANTVCVNTIGSFECVCPDGY 33

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	734
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		100.0
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.81
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.77
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.76
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.62
KOG4659|consensus	1899		99.54
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
COG3391	381	Uncharacterized conserved protein [Function unknow	99.29
PRK11028	330	6-phosphogluconolactonase; Provisional	99.28
PRK11028	330	6-phosphogluconolactonase; Provisional	99.27
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.26
KOG4659|consensus	1899		99.26
COG3391	381	Uncharacterized conserved protein [Function unknow	99.21
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.17
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.12
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.07
KOG4499|consensus	310		99.06
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.03
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.97
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.96
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.94
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.89
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.89
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.84
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.79
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.79
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.77
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.76
KOG1520|consensus	376		98.74
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.74
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.73
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	98.7
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.66
KOG1520|consensus	376		98.62
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.59
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.58
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.58
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.55
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.54
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.52
PRK04043	419	tolB translocation protein TolB; Provisional	98.49
PRK04792	448	tolB translocation protein TolB; Provisional	98.48
PRK05137	435	tolB translocation protein TolB; Provisional	98.47
PRK04922	433	tolB translocation protein TolB; Provisional	98.46
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.44
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.42
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.38
PRK03629	429	tolB translocation protein TolB; Provisional	98.36
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.36
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.33
PRK00178	430	tolB translocation protein TolB; Provisional	98.33
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.32
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.28
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.26
PRK01029	428	tolB translocation protein TolB; Provisional	98.25
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.25
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.23
PRK02889	427	tolB translocation protein TolB; Provisional	98.22
PF12662	24	cEGF: Complement Clr-like EGF-like	98.21
KOG4260|consensus	350		98.21
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.19
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.17
KOG1219|consensus	4289		98.16
KOG4260|consensus	350		98.16
PRK04043	419	tolB translocation protein TolB; Provisional	98.12
KOG1219|consensus	4289		98.08
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.07
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.07
PRK01742	429	tolB translocation protein TolB; Provisional	98.06
PRK04792	448	tolB translocation protein TolB; Provisional	98.02
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.0
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.94
PRK05137	435	tolB translocation protein TolB; Provisional	97.93
KOG1217|consensus	487		97.92
PRK04922	433	tolB translocation protein TolB; Provisional	97.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.91
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.91
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.89
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	97.85
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	97.81
PRK01029	428	tolB translocation protein TolB; Provisional	97.73
PRK00178	430	tolB translocation protein TolB; Provisional	97.72
PRK03629	429	tolB translocation protein TolB; Provisional	97.71
PRK02889	427	tolB translocation protein TolB; Provisional	97.68
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	97.64
KOG1217|consensus	487		97.57
KOG1446|consensus	311		97.55
KOG4499|consensus	310		97.52
COG4946	668	Uncharacterized protein related to the periplasmic	97.43
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.43
COG5276	370	Uncharacterized conserved protein [Function unknow	97.42
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.39
KOG4289|consensus	2531		97.38
PRK02888	635	nitrous-oxide reductase; Validated	97.25
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.2
PRK01742	429	tolB translocation protein TolB; Provisional	97.18
KOG1446|consensus	311		97.11
KOG4289|consensus	2531		97.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.04
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.03
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	96.98
COG5276	370	Uncharacterized conserved protein [Function unknow	96.88
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	96.85
KOG0291|consensus	893		96.84
COG4946	668	Uncharacterized protein related to the periplasmic	96.82
KOG0279|consensus	315		96.82
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.72
KOG1225|consensus	525		96.71
KOG0291|consensus	893		96.53
KOG1225|consensus	525		96.53
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.52
KOG0315|consensus	311		96.47
KOG0289|consensus	506		96.45
PTZ00421	493	coronin; Provisional	96.41
KOG0273|consensus	524		96.39
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	96.28
KOG0285|consensus	460		96.27
PF12662	24	cEGF: Complement Clr-like EGF-like	96.26
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	96.23
KOG2397|consensus	480		96.2
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.18
PLN00181	793	protein SPA1-RELATED; Provisional	96.18
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.07
KOG0318|consensus	603		96.02
KOG3509|consensus	964		95.94
KOG0285|consensus	460		95.91
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	95.85
KOG0266|consensus	456		95.83
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	95.82
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	95.81
KOG0994|consensus	1758		95.76
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.74
PRK13616	591	lipoprotein LpqB; Provisional	95.72
PTZ00421	493	coronin; Provisional	95.52
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	95.39
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	95.38
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	95.35
PRK02888	635	nitrous-oxide reductase; Validated	95.3
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.23
KOG2397|consensus	480		95.21
KOG0315|consensus	311		95.18
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.02
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.01
KOG0279|consensus	315		94.93
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.87
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	94.85
smart00181	35	EGF Epidermal growth factor-like domain.	94.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.75
KOG4649|consensus	354		94.7
PTZ00420	568	coronin; Provisional	94.44
KOG4328|consensus	498		94.33
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.3
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	94.24
KOG0286|consensus	343		94.2
KOG0266|consensus	456		94.1
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.06
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	94.03
KOG3509|consensus	964		94.01
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.92
PLN00181	793	protein SPA1-RELATED; Provisional	93.89
KOG0293|consensus	519		93.83
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	93.73
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.62
KOG4378|consensus	673		93.51
PTZ00420	568	coronin; Provisional	93.45
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	93.38
KOG1274|consensus	933		93.29
KOG2139|consensus	445		93.19
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	93.19
KOG4441|consensus	571		93.17
KOG2106|consensus	626		93.16
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.1
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	93.05
KOG0272|consensus	459		93.03
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	92.87
KOG1407|consensus	313		92.61
KOG0272|consensus	459		92.55
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	92.51
KOG0289|consensus	506		92.46
smart00181	35	EGF Epidermal growth factor-like domain.	92.41
KOG0310|consensus	487		92.32
KOG0650|consensus	733		92.2
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.1
KOG0308|consensus	735		92.02
KOG0646|consensus	476		91.93
cd00053	36	EGF Epidermal growth factor domain, found in epide	91.92
PHA02713	557	hypothetical protein; Provisional	91.68
KOG0270|consensus	463		91.63
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	91.59
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.53
KOG0994|consensus	1758		91.35
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	91.07
KOG0318|consensus	603		90.98
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	90.73
COG1520	370	FOG: WD40-like repeat [Function unknown]	90.71
KOG0296|consensus	399		90.69
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	90.61
smart00284	255	OLF Olfactomedin-like domains.	90.5
KOG0276|consensus	794		90.47
KOG0268|consensus	433		90.46
KOG0263|consensus	707		90.38
KOG4378|consensus	673		90.06
cd00053	36	EGF Epidermal growth factor domain, found in epide	90.03
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.92
KOG0281|consensus	499		89.83
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	89.74
KOG0273|consensus	524		89.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	89.52
KOG2111|consensus	346		89.47
PRK13616	591	lipoprotein LpqB; Provisional	89.36
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.31
KOG2048|consensus	691		89.3
KOG0772|consensus	641		89.19
KOG0319|consensus	775		89.16
KOG3914|consensus	390		89.13
KOG1274|consensus	933		89.13
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	88.72
KOG0270|consensus	463		88.33
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	87.32
KOG1273|consensus	405		86.67
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	86.62
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	86.39
KOG0268|consensus	433		86.34
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	86.15
KOG0310|consensus	487		86.09
KOG4283|consensus	397		85.97
KOG1539|consensus	910		85.7
KOG0282|consensus	503		85.44
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	85.12
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	84.88
KOG0276|consensus	794		84.74
KOG4441|consensus	571		84.13
KOG0303|consensus	472		83.74
PRK10115	686	protease 2; Provisional	83.24
KOG0286|consensus	343		83.17
KOG0281|consensus	499		83.11
KOG2111|consensus	346		83.04
KOG0308|consensus	735		83.03
KOG2106|consensus	626		83.0
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	82.77
KOG0274|consensus	537		81.84
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	81.75
KOG0263|consensus	707		81.53
KOG2096|consensus	420		81.32
KOG0277|consensus	311		81.28
KOG1407|consensus	313		81.16
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	80.82
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.68

>KOG1214|consensus

Probab=100.00  E-value=3.5e-50  Score=430.88  Aligned_cols=332  Identities=32%  Similarity=0.659  Sum_probs=272.6

Q ss_pred             CCCCCCCCCCCCc-cccccccCCCCC--cCccccCCCcceeecCCCcEecCCCCccccc----cCcC-------------
Q psy8875         375 DCPLMQDEDPTKC-GVDECAKDNGGC--LHKCVDLPVGYMCECNEGYKLSSNRHTCIDI----DECE-------------  434 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~~~eC~~~~~~C--~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~----~eC~-------------  434 (734)
                      .|.+||.+++..| ++|||..  ..|  .+.|.|++++|.|.|.+||+.  |+..|+..    ..|.             
T Consensus       812 ~CLPGfsGDG~~c~dvDeC~p--srChp~A~CyntpgsfsC~C~pGy~G--DGf~CVP~~~~~T~C~~er~hpl~chg~t  887 (1289)
T KOG1214|consen  812 ACLPGFSGDGHQCTDVDECSP--SRCHPAATCYNTPGSFSCRCQPGYYG--DGFQCVPDTSSLTPCEQERFHPLQCHGST  887 (1289)
T ss_pred             eecCCccCCccccccccccCc--cccCCCceEecCCCcceeecccCccC--CCceecCCCccCCccccccccceeecccc
Confidence            8899998888777 9999984  466  458999999999999999987  56666421    1111             


Q ss_pred             ------------------CCC---------------Cccc--ceecc--CC-ceEEecCCC--eeeC-----CCCCcccc
Q psy8875         435 ------------------TPG---------------SCSQ--ICLNE--KG-GFKCECVAG--YIKD-----PHHPTQCK  469 (734)
Q Consensus       435 ------------------~~~---------------~C~~--~C~n~--~g-~~~C~C~~g--y~~~-----~~~~t~C~  469 (734)
                                        .++               .|+.  .|..+  .| ++.|.|..+  -...     +...-.|.
T Consensus       888 ~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gtr~~pg~tp~Ci  967 (1289)
T KOG1214|consen  888 GFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGTRSQPGTTPACI  967 (1289)
T ss_pred             ceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCccccccCCCCCCCcc
Confidence                              000               1211  22222  23 377777652  2111     10000122


Q ss_pred             cc------------------cccceeeeeeccceEEeecCCCceEE------EecCCcceEEEeeeccCCeEEEEEeCCC
Q psy8875         470 AA------------------EGHASLLFARKHDIRKISLDHHEMTA------IVNSTKSATAIDFVFRTGMIFWSDISEK  525 (734)
Q Consensus       470 ~~------------------~~~~~l~~~~~~~I~~i~l~~~~~~~------l~~~~~~~~~i~~d~~~~~lyw~d~~~~  525 (734)
                      ..                  ..--+|||+....|.+..+++..+..      |+-...-|+|||||-++.+|||+|+...
T Consensus       968 ptvApp~v~np~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~ 1047 (1289)
T KOG1214|consen  968 PTVAPPMVRNPTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGR 1047 (1289)
T ss_pred             CCCCCCcccCCCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCC
Confidence            11                  11137999999999999999876644      3334567899999999999999999999


Q ss_pred             cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEE
Q psy8875         526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMY  605 (734)
Q Consensus       526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LY  605 (734)
                      .|.|+.|. |...+.++..+|..|+||||||++++|||||+...+|+++.|||+.+++|+...|.+|++|++|+.+|.||
T Consensus      1048 SI~rasL~-G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLY 1126 (1289)
T KOG1214|consen 1048 SISRASLE-GAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLY 1126 (1289)
T ss_pred             cccccccc-CCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCcee
Confidence            99999999 66677777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEE
Q psy8875         606 WSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSI  684 (734)
Q Consensus       606 wtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl  684 (734)
                      ||||. ++++|+++.|||+++++++.+++..||||++|++...|-|+|+++++++.+.++|..|++++.   .|+.||+|
T Consensus      1127 wtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~---~LqYPF~i 1203 (1289)
T KOG1214|consen 1127 WTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQN---NLQYPFSI 1203 (1289)
T ss_pred             eccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhh---cccCceee
Confidence            99996 578999999999999999999999999999999999999999999999999999999999874   58999999


Q ss_pred             EEECCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         685 STFEDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       685 ~v~~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      +-+++.+|||||+.++|..++++.++.+..
T Consensus      1204 tsy~~~fY~TDWk~n~vvsv~~~~~~~td~ 1233 (1289)
T KOG1214|consen 1204 TSYADHFYHTDWKRNGVVSVNKHSGQFTDE 1233 (1289)
T ss_pred             eeccccceeeccccCceEEeeccccccccc
Confidence            999999999999999999999988876543

>KOG1215|consensus

Probab=100.00  E-value=4e-48  Score=465.12  Aligned_cols=573  Identities=37%  Similarity=0.682  Sum_probs=469.8

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccccC--------------------------cccCCceeccCC
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKR--------------------------ICGQEEFTCRSS  104 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~--------------------------~C~~~~~~C~~~  104 (734)
                      ..... ..+|.+.||++|+..|.+..+.|+...++|..+...                          +.....+-....
T Consensus        28 ~~~~~-~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~~l~~~~~~~y~~d~~v~~~~~~sg~~~~~~~~~~  106 (877)
T KOG1215|consen   28 RKILE-KEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRRALTLFEDGLYWTDKSVSAANKKTGKDVTRLSQDS  106 (877)
T ss_pred             eEEee-ccceeCCCcceecchhheeeeccccCCceEEeccCCccceeeeeeccceeeccchhhhhccCCCCcceeehhcC
Confidence            33444 789999999999999999999999999998766432                          111111122221


Q ss_pred             CCeeeCCCCCCCCCCCCCCCCCcC-CCCCCCcccccCcCC--CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCC
Q psy8875         105 PGECVPLTWMCDDNPDCSDGSDEK-SCKNRTCQASEFRCG--NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVN  181 (734)
Q Consensus       105 ~~~Ci~~~~~Cdg~~dC~dg~de~-~C~~~~C~~~~f~C~--~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~  181 (734)
                      ..-.....|.+.+...+.++.++. ++....|...+|+|.  +++|||..|+||+..+|.+|+||..        |... 
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~--------~~~~-  177 (877)
T KOG1215|consen  107 HFPLDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELN--------CAVR-  177 (877)
T ss_pred             CCCcceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhhc--------cccc-
Confidence            111334788889999999999995 444467888899999  8899999999999999999999988        5200 


Q ss_pred             CCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCC
Q psy8875         182 GHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC  261 (734)
Q Consensus       182 ~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C  261 (734)
                                        .                       ..+. ...|+|     |...++||+..+|.+++|+..+
T Consensus       178 ------------------~-----------------------~~~~-~~~~~~-----~~~~~~~d~~~~~~~~~d~~~~  210 (877)
T KOG1215|consen  178 ------------------R-----------------------CEPR-GASLDC-----IVAIKVCDIQHDCADDYDESEG  210 (877)
T ss_pred             ------------------c-----------------------cCcc-cccccc-----ceeeeecCcccccccccccccC
Confidence                              0                       0122 234555     8889999999999999999887


Q ss_pred             C-CCCC---CCceecCCC-CeecCCcccCCCCCCCCCCCC--CCCCCCCCCCCceecCCCCccccccccccCCCCCCCC-
Q psy8875         262 H-ETCR---SDEFTCANG-NCIQRIWLCDGDDDCKDGSDE--KSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS-  333 (734)
Q Consensus       262 ~-~~C~---~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe--~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~-  333 (734)
                      . ..+.   ...++|..+ +||...|.|||..||.+++||  .+|....|...++.|.+ +.|++..+.|+|..||+++ 
T Consensus       211 ~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~g~~d~pdg~  289 (877)
T KOG1215|consen  211 RIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECAD-GDCSDRQKLCDGDLDCPDGL  289 (877)
T ss_pred             cccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecC-CCCccceEEecCccCCCCcc
Confidence            5 2222   467888886 999999999999999999999  57877888888899977 8999999999999999888 


Q ss_pred             ---CCCCCCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcc
Q psy8875         334 ---TCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGY  410 (734)
Q Consensus       334 ---~C~~~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~  410 (734)
                         .|.+...+  ...|.|       .  +++ |...++|++       +    ..+.+++|......+.+.+.+...+.
T Consensus       290 de~~~~~~~~~--~~~~d~-------~--~~~-i~~~~~~~~-------~----~~~~~~~~~~~~~~~~~~~~~~~v~~  346 (877)
T KOG1215|consen  290 DEDYCKKKLYW--SMNVDG-------S--GRR-ILLSKLCHG-------Y----WTDGLNECAERVLKCSHKCPDVSVGP  346 (877)
T ss_pred             cccccccceee--eeeccc-------C--Cce-eeecccCcc-------c----cccccccchhhcccccCCCCccccCC
Confidence               34332111  234555       3  556 887777766       1    22456677777788999999999999


Q ss_pred             eeecCCCcEecCCCCccccccCcCCCCCccccee-ccCCceEEecCCCeeeCCCCCccccccc-ccceeeeeeccceEEe
Q psy8875         411 MCECNEGYKLSSNRHTCIDIDECETPGSCSQICL-NEKGGFKCECVAGYIKDPHHPTQCKAAE-GHASLLFARKHDIRKI  488 (734)
Q Consensus       411 ~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~-n~~g~~~C~C~~gy~~~~~~~t~C~~~~-~~~~l~~~~~~~I~~i  488 (734)
                      .|.|..++.+.....+ ...+++..++.|+|+|. +.++.|.|.|..||.+....   |.+.. ..+++++++.+.|+++
T Consensus       347 ~~~~~~~~~~~~~~~~-~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~---c~~~~~~~~~l~~s~~~~ir~~  422 (877)
T KOG1215|consen  347 RCDCMGAKVLPLGART-DSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK---CEASDQPEAFLLFSNRHDIRRI  422 (877)
T ss_pred             cccCCccceecccccc-cCCcccccCCccceeccCCCCCceeEecCCCcEeccCC---ceecCCCCcEEEEecCccceec
Confidence            9999999988666655 23344556799999999 56899999999999998765   76644 7889999999999999


Q ss_pred             ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875         489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK  568 (734)
Q Consensus       489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~  568 (734)
                      .++...+...+.....+.+++++..++.+||+|....+|.++..++..... +...+...|.+||+||+.+++||+|...
T Consensus       423 ~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~-~~~~g~~~~~~lavD~~~~~~y~tDe~~  501 (877)
T KOG1215|consen  423 SLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECE-LCGDGLCIPEGLAVDWIGDNIYWTDEGN  501 (877)
T ss_pred             ccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccce-EeccCccccCcEEEEeccCCceecccCC
Confidence            999876666666668899999999999999999999999999998554444 5666888999999999999999999999


Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeE
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL  648 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~L  648 (734)
                      ..|.+..++|..+.+++...+..|+.++|||..++|||+||+..++|.|+.|||..+.+++..++.+|+||++|...+++
T Consensus       502 ~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~  581 (877)
T KOG1215|consen  502 CLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRL  581 (877)
T ss_pred             ceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeeccee
Confidence            99999999999999999888899999999999999999999976699999999999999999999999999999999999


Q ss_pred             EEEeCCCC-eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875         649 YWVDAKLN-EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       649 Yw~D~~~~-~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                      ||+|.... .|.+++++|++|+ ++. ...+.+|++|+++++++||+||....+.+..+..+..
T Consensus       582 yw~d~~~~~~i~~~~~~g~~r~-~~~-~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~  643 (877)
T KOG1215|consen  582 YWADAKLDYTIESANMDGQNRR-VVD-SEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSD  643 (877)
T ss_pred             EEEcccCCcceeeeecCCCceE-Eec-cccCCCceEEEEecceeEEeeccccceEeeecccCCc
Confidence            99999998 8999999999998 332 2568999999999999999999999999999988877

>KOG1214|consensus

Probab=100.00  E-value=1.2e-35  Score=319.40  Aligned_cols=316  Identities=25%  Similarity=0.481  Sum_probs=236.8

Q ss_pred             ccccC-CCcceeecCCCcEecCCCCccccccCcCCCCCccc--ceeccCCceEEecCCCeeeCCCC-------Ccccccc
Q psy8875         402 KCVDL-PVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNEKGGFKCECVAGYIKDPHH-------PTQCKAA  471 (734)
Q Consensus       402 ~C~~~-~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~--~C~n~~g~~~C~C~~gy~~~~~~-------~t~C~~~  471 (734)
                      .|+.+ .+.|.|.|.+||..  |+..|.++|||. +..|.+  .|.|++|+|.|.|.+||.++...       .|.|...
T Consensus       800 ~c~~hGgs~y~C~CLPGfsG--DG~~c~dvDeC~-psrChp~A~CyntpgsfsC~C~pGy~GDGf~CVP~~~~~T~C~~e  876 (1289)
T KOG1214|consen  800 RCVHHGGSTYSCACLPGFSG--DGHQCTDVDECS-PSRCHPAATCYNTPGSFSCRCQPGYYGDGFQCVPDTSSLTPCEQE  876 (1289)
T ss_pred             EEEecCCceEEEeecCCccC--CccccccccccC-ccccCCCceEecCCCcceeecccCccCCCceecCCCccCCccccc
Confidence            45555 45799999999976  899999999998 566754  89999999999999999987431       1223222


Q ss_pred             cccceeeeeeccceEEee-----------------------------------------------------cCCCceEEE
Q psy8875         472 EGHASLLFARKHDIRKIS-----------------------------------------------------LDHHEMTAI  498 (734)
Q Consensus       472 ~~~~~l~~~~~~~I~~i~-----------------------------------------------------l~~~~~~~l  498 (734)
                      ..+|+.--.+...++.++                                                     -+|.+++..
T Consensus       877 r~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~~~vp~Cd~hgh~ap~qchG~~~~CwCvd~dGrev~gt  956 (1289)
T KOG1214|consen  877 RFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPEQYVPQCDDHGHFAPLQCHGKSDFCWCVDKDGREVQGT  956 (1289)
T ss_pred             cccceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCcccccCCCccccccccccccCCCcceeEEecCCCcCcccc
Confidence            112222111121222222                                                     222221111


Q ss_pred             e------------------cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE----EEEeCCCCCccceeeec
Q psy8875         499 V------------------NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT----VVIEEDKTIADGLAVDW  556 (734)
Q Consensus       499 ~------------------~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~----~~~~~~~~~p~glAvD~  556 (734)
                      .                  .+...+-++.-.....+|.++.  .++|.+..+++...++    .++.-.-..|.||++|-
T Consensus       957 r~~pg~tp~CiptvApp~v~np~~~~~v~p~~~gt~LL~aq--g~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC 1034 (1289)
T KOG1214|consen  957 RSQPGTTPACIPTVAPPMVRNPTPRPDVTPPSVGTFLLYAQ--GQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDC 1034 (1289)
T ss_pred             ccCCCCCCCccCCCCCCcccCCCCCCCCcCCCCcceEEEec--cceEEEeecCcchhchhhhhceEecccceeeeeeccc
Confidence            0                  0001111111122344555553  5678888888543322    22222345688999999


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      +.++|||||.....|.+++|.|...++++...|..|.|||||+.++.|||+|. ...+|+++.|||+.|++|+.++|..|
T Consensus      1035 ~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS-~lD~IevA~LdG~~rkvLf~tdLVNP 1113 (1289)
T KOG1214|consen 1035 RERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDS-VLDKIEVALLDGSERKVLFYTDLVNP 1113 (1289)
T ss_pred             ccceEEEeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeecc-ccchhheeecCCceeeEEEeecccCc
Confidence            99999999999999999999999999999999999999999999999999995 46899999999999999999999999


Q ss_pred             eeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875         637 NGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      ++|++|+..+.|||+||.  +.+|++.+|||++|++++..  .+.-|.||++  +...|-|.|++++++.-+++ +|..+
T Consensus      1114 R~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p-~g~gR 1190 (1289)
T KOG1214|consen 1114 RAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLP-DGTGR 1190 (1289)
T ss_pred             ceEEeecccCceeeccccccCCcceeeccCCccceEEeec--ccCCCCCceeCcccceeeEEecCCcceeEecC-CCCcc
Confidence            999999999999999985  45899999999999999974  4777999988  78999999999999988865 67777


Q ss_pred             EEEecccccCCCccCC
Q psy8875         713 TAITGVHQTHEPLNSP  728 (734)
Q Consensus       713 ~~l~~~~~l~~P~~i~  728 (734)
                      .++...  |+-||+|.
T Consensus      1191 R~i~~~--LqYPF~it 1204 (1289)
T KOG1214|consen 1191 RVIQNN--LQYPFSIT 1204 (1289)
T ss_pred             hhhhhc--ccCceeee
Confidence            776654  88999985

>KOG1215|consensus

Probab=100.00  E-value=1.7e-33  Score=338.56  Aligned_cols=508  Identities=29%  Similarity=0.492  Sum_probs=368.5

Q ss_pred             eecCcCccCCCCCCCCCCccc-ccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCC--cccccCcCC
Q psy8875          67 CIPSTWVCDGQNDCPDGVDEK-KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRT--CQASEFRCG  143 (734)
Q Consensus        67 Ci~~~~~cdg~~dC~dg~de~-~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~--C~~~~f~C~  143 (734)
                      .+...|.+.+...+.+++++. ++....|...+|+|..++.+|||..|+||+..+|.||+||..|....  +....|+| 
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~-  188 (877)
T KOG1215|consen  110 LDIHAYHPSSQPLAPDPCAESGNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDC-  188 (877)
T ss_pred             cceeEEecCCCCCCCCcccccCCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCcccccccc-
Confidence            444999999999999999995 44445677888999843479999999999999999999999996433  33345666 


Q ss_pred             CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCC
Q psy8875         144 NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGS  223 (734)
Q Consensus       144 ~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~  223 (734)
                          |...++||+..+|.+++|+..        +.                     .+.+..                  
T Consensus       189 ----~~~~~~~d~~~~~~~~~d~~~--------~~---------------------~~~~~~------------------  217 (877)
T KOG1215|consen  189 ----IVAIKVCDIQHDCADDYDESE--------GR---------------------IYWTDD------------------  217 (877)
T ss_pred             ----ceeeeecCccccccccccccc--------Cc---------------------ccccCC------------------
Confidence                999999999999999999976        31                     110000                  


Q ss_pred             CCCCCCCceeeCC-CceecCcCCCCCCCCCCCCCCCC--CCC-CCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCC
Q psy8875         224 KPCRNSTMFRCTG-GMCIPSTWVCDGQNDCPDGVDEK--KCH-ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC  299 (734)
Q Consensus       224 ~~C~~~~~~~C~~-g~Ci~~~~~Cdg~~dC~dg~de~--~C~-~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C  299 (734)
                       + . ...++|.+ ++||..+|.|||..||.+++||.  +|. ..|...++.|.++.|++..+.|+|..||++|+||.+|
T Consensus       218 -~-~-~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~de~~~  294 (877)
T KOG1215|consen  218 -S-R-IEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDCPDGLDEDYC  294 (877)
T ss_pred             -c-c-eeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCCCCccccccc
Confidence             0 1 36788877 59999999999999999999994  665 5788889999999999999999999999999999999


Q ss_pred             CCCCCCCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCC
Q psy8875         300 QPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLM  379 (734)
Q Consensus       300 ~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g  379 (734)
                      ....+....|.|.. ++ |...++|++...+..+.|..       ....+          .+.+.+  ..-....+|..+
T Consensus       295 ~~~~~~~~~~d~~~-~~-i~~~~~~~~~~~~~~~~~~~-------~~~~~----------~~~~~~--~~v~~~~~~~~~  353 (877)
T KOG1215|consen  295 KKKLYWSMNVDGSG-RR-ILLSKLCHGYWTDGLNECAE-------RVLKC----------SHKCPD--VSVGPRCDCMGA  353 (877)
T ss_pred             ccceeeeeecccCC-ce-eeecccCccccccccccchh-------hcccc----------cCCCCc--cccCCcccCCcc
Confidence            87666567788887 67 99888887532222222211       11111          011110  001111255555


Q ss_pred             CCCCCCCc-cccccccCCCCCcCccc-cCCCcceeecCCCcEecCCCCccccccCcCCC------CCcccceeccCCceE
Q psy8875         380 QDEDPTKC-GVDECAKDNGGCLHKCV-DLPVGYMCECNEGYKLSSNRHTCIDIDECETP------GSCSQICLNEKGGFK  451 (734)
Q Consensus       380 ~d~~~~~C-~~~eC~~~~~~C~~~C~-~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~------~~C~~~C~n~~g~~~  451 (734)
                      +......- +.+.|...++.|+|.|. +.+++|.|.|..||.+..++  |...+-....      ..+..+....     
T Consensus       354 ~~~~~~~~~~~~~~~~~~g~Csq~C~~~~p~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~~-----  426 (877)
T KOG1215|consen  354 KVLPLGARTDSNPCESDNGGCSQLCVPNSPGTFKCACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLDC-----  426 (877)
T ss_pred             ceecccccccCCcccccCCccceeccCCCCCceeEecCCCcEeccCC--ceecCCCCcEEEEecCccceecccCC-----
Confidence            53221111 33566777899999999 46999999999999998666  5443211110      0111111111     


Q ss_pred             EecCCCeeeCCCCCccccccc---ccceeeeee--ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCC
Q psy8875         452 CECVAGYIKDPHHPTQCKAAE---GHASLLFAR--KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEK  525 (734)
Q Consensus       452 C~C~~gy~~~~~~~t~C~~~~---~~~~l~~~~--~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~  525 (734)
                       . ...+..... +. -.+.+   ....+++++  ...|.+....+..... +..+.-.+.++++|+..+.+||+|....
T Consensus       427 -~-~~~~p~~~~-~~-~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~~lavD~~~~~~y~tDe~~~  502 (877)
T KOG1215|consen  427 -S-DVSRPLEGI-KN-AVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPEGLAVDWIGDNIYWTDEGNC  502 (877)
T ss_pred             -C-cceEEccCC-cc-ceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccCcEEEEeccCCceecccCCc
Confidence             1 001111100 00 00100   011444544  2346666666665555 3446778899999999999999999999


Q ss_pred             cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875         526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM  604 (734)
Q Consensus       526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L  604 (734)
                      .|....++ ++.+.+++...+..|+.++||+..+.+||+|++ ..+|.++.++|..+.+++..++..|+||++|.....+
T Consensus       503 ~i~v~~~~-g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~  581 (877)
T KOG1215|consen  503 LIEVADLD-GSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRL  581 (877)
T ss_pred             eeEEEEcc-CCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeeccee
Confidence            99999988 555778887778999999999999999999998 4589999999999999998889999999999999999


Q ss_pred             EEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875         605 YWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN  664 (734)
Q Consensus       605 Ywtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d  664 (734)
                      ||.|......|.+++++|+.++++....+..|.++++  +.+++||+|+....+.+....
T Consensus       582 yw~d~~~~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~--~~~~iyw~d~~~~~~~~~~~~  639 (877)
T KOG1215|consen  582 YWADAKLDYTIESANMDGQNRRVVDSEDLPHPFGLSV--FEDYIYWTDWSNRAISRAEKH  639 (877)
T ss_pred             EEEcccCCcceeeeecCCCceEEeccccCCCceEEEE--ecceeEEeeccccceEeeecc
Confidence            9999765458999999999998666678888998887  799999999988877777644

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.81  E-value=3.2e-18  Score=175.97  Aligned_cols=212  Identities=25%  Similarity=0.400  Sum_probs=160.4

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL  584 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l  584 (734)
                      +.++.|+++.+.|||+|...++|+++++.++ ..++ +.  +..|.|++++...+.||+++..  .+.+.++.....+++
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~-~~~~-~~--~~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~   75 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTG-EVEV-ID--LPGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVL   75 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTT-EEEE-EE--SSSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCC-eEEE-Ee--cCCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEE
Confidence            5789999989999999999999999999844 3322 22  2239999999777999999974  455558776666665


Q ss_pred             EcC-----CCCCceeEEEeCCCCeEEEEecCCC-------ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         585 VRS-----YLDEPRSLALNPIDGWMYWSDWGQN-------AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       585 ~~~-----~l~~P~~iavD~~~g~LYwtd~~~~-------~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      +..     .+..|+++++|+ .|.||+++.+..       ++|++.+.+|+ .+ ++...+..||||++++.++.||++|
T Consensus        76 ~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~-~~~~~~~~pNGi~~s~dg~~lyv~d  152 (246)
T PF08450_consen   76 ADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VT-VVADGLGFPNGIAFSPDGKTLYVAD  152 (246)
T ss_dssp             EEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EE-EEEEEESSEEEEEEETTSSEEEEEE
T ss_pred             eeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EE-EEecCcccccceEECCcchheeecc
Confidence            543     578999999998 578999986421       57999999944 33 3345689999999999999999999


Q ss_pred             CCCCeEEEEecCCC-----ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCcc
Q psy8875         653 AKLNEISSCDYNGG-----NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN  726 (734)
Q Consensus       653 ~~~~~I~~~~~dG~-----~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~  726 (734)
                      +..++|++++++..     ++++++........|.||+++ +++||++.+..++|+++++. |+.+..|...  ..+|..
T Consensus       153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p--~~~~t~  229 (246)
T PF08450_consen  153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP--VPRPTN  229 (246)
T ss_dssp             TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S--SSSEEE
T ss_pred             cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC--CCCEEE
Confidence            99999999998743     345555433333469999994 79999999999999999986 8888877654  346665


Q ss_pred             CC
Q psy8875         727 SP  728 (734)
Q Consensus       727 i~  728 (734)
                      ++
T Consensus       230 ~~  231 (246)
T PF08450_consen  230 CA  231 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.77  E-value=7.6e-17  Score=194.92  Aligned_cols=214  Identities=19%  Similarity=0.264  Sum_probs=164.5

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-------------CCCCCccceeeeccCCcEEEEeC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-------------EDKTIADGLAVDWIYSHIYWTDA  566 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-------------~~~~~p~glAvD~~~~~lY~td~  566 (734)
                      ..+..|.+|++|...+.||++|..+++|++++++ |.....+..             ..+..|.|||+|..++.|||+|.
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt  643 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT  643 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC
Confidence            4567788999998889999999999999999987 433222221             12567999999988888999999


Q ss_pred             CCCeEEEEeCCCCceEEEEcC----------------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         567 HKNTIELANFEGTMRKVLVRS----------------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       567 ~~~~I~~~~ldG~~~~~l~~~----------------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      .+++|+++++.+...+++...                .+..|.+|++|+.++.||+++.+ +++|++.+..+....++..
T Consensus       644 ~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~g~v~~~~G  722 (1057)
T PLN02919        644 ENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISDGVTRVFSG  722 (1057)
T ss_pred             CCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCCCeEEEEec
Confidence            999999999887766665421                15689999999999999999975 4788888875443332211


Q ss_pred             --------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC-------------------CCC
Q psy8875         631 --------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS-------------------PQT  677 (734)
Q Consensus       631 --------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~-------------------~~~  677 (734)
                                    ..+..|+||++++.+++||++|...++|.++++++.....+...                   ...
T Consensus       723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~  802 (1057)
T PLN02919        723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVL  802 (1057)
T ss_pred             CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhh
Confidence                          23568999999988889999999999999999876554433211                   113


Q ss_pred             CCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         678 LSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       678 ~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +.+|.+|++. ++.||++|+.+++|.+++..++...++.
T Consensus       803 l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia  841 (1057)
T PLN02919        803 LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA  841 (1057)
T ss_pred             ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe
Confidence            5689999995 5789999999999999998777655544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.76  E-value=4.2e-16  Score=188.49  Aligned_cols=233  Identities=13%  Similarity=0.169  Sum_probs=175.7

Q ss_pred             eeeeee--ccceEEeecCCCceEEEec--------------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVN--------------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT  539 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~--------------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~  539 (734)
                      .+++++  .+.|+++++++.....+..              .+..|.+|++++..+.|||+|..+++|+++++.++. .+
T Consensus       581 ~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~  659 (1057)
T PLN02919        581 RLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VR  659 (1057)
T ss_pred             eEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EE
Confidence            355544  4678888887654333322              245799999998888999999999999999887433 33


Q ss_pred             EEEeC----------------CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc--------------CCC
Q psy8875         540 VVIEE----------------DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR--------------SYL  589 (734)
Q Consensus       540 ~~~~~----------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~--------------~~l  589 (734)
                      ++...                .+..|.+|++|+.+++||+++..+++|++.++.+....++..              ..+
T Consensus       660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~  739 (1057)
T PLN02919        660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSF  739 (1057)
T ss_pred             EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccc
Confidence            33211                156799999998899999999999999999886554443321              135


Q ss_pred             CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE---------------------cCCCCceeEEEecCCCeE
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV---------------------SDIKWPNGLTLDLVQRRL  648 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~---------------------~~l~~P~glavD~~~~~L  648 (734)
                      ..|.||+++|..++||++|.+ +++|.+.++++....++..                     ..+..|.||++| .++.|
T Consensus       740 ~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-~dG~L  817 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-KDGQI  817 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-CCCcE
Confidence            789999999988899999975 4799999987544433321                     124579999999 45679


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCc
Q psy8875         649 YWVDAKLNEISSCDYNGGNRRLVLYSP-----------QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       649 Yw~D~~~~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                      |++|+.+++|.+++.++....++....           ..+..|.||++ .+++||++|..+++|.+++..+++.
T Consensus       818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999999999999999887666654321           23568999999 4689999999999999999888765

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.62  E-value=1.6e-13  Score=141.03  Aligned_cols=210  Identities=21%  Similarity=0.243  Sum_probs=151.8

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---C-CCCC
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---E-DKTI  548 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~-~~~~  548 (734)
                      ..|+|++  ...|+++++++.....+...  .|.+++++...+.||+++..  .+..+++..+....++..   . .+..
T Consensus        12 g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~~~~~~~~~~~~~   87 (246)
T PF08450_consen   12 GRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVLADLPDGGVPFNR   87 (246)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEEEEEESS--SEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEEEEEETTCSCTEE
T ss_pred             CEEEEEEcCCCEEEEEECCCCeEEEEecC--CCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEEeeccCCCcccCC
Confidence            3566665  57799999988766554332  39999999667999999854  344447775543333322   1 5678


Q ss_pred             ccceeeeccCCcEEEEeCCC--------CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875         549 ADGLAVDWIYSHIYWTDAHK--------NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM  620 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~--------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l  620 (734)
                      |..+++|+ .++||+++...        ++|++.+.+++. +.+. ..+..|+||+++|....||+++.. ..+|++.++
T Consensus        88 ~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~-~~~~-~~~~~pNGi~~s~dg~~lyv~ds~-~~~i~~~~~  163 (246)
T PF08450_consen   88 PNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGKV-TVVA-DGLGFPNGIAFSPDGKTLYVADSF-NGRIWRFDL  163 (246)
T ss_dssp             EEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSEE-EEEE-EEESSEEEEEEETTSSEEEEEETT-TTEEEEEEE
T ss_pred             CceEEEcC-CCCEEEEecCCCccccccccceEEECCCCeE-EEEe-cCcccccceEECCcchheeecccc-cceeEEEec
Confidence            99999996 57799998763        569999999543 3333 568899999999998899999965 478999999


Q ss_pred             CCCc-----eEEEEEcCC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCE
Q psy8875         621 DGSH-----RNMVIVSDI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDW  690 (734)
Q Consensus       621 dG~~-----~~~lv~~~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~  690 (734)
                      +...     +++++....  ..|.||++| ..++||++.+..++|.+++.+|.-...+.. +  ..+|..+++-   .+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD-~~G~l~va~~~~~~I~~~~p~G~~~~~i~~-p--~~~~t~~~fgg~~~~~  239 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVD-SDGNLWVADWGGGRIVVFDPDGKLLREIEL-P--VPRPTNCAFGGPDGKT  239 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEB-TTS-EEEEEETTTEEEEEETTSCEEEEEE--S--SSSEEEEEEESTTSSE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEc-CCCCEEEEEcCCCEEEEECCCccEEEEEcC-C--CCCEEEEEEECCCCCE
Confidence            6332     344443322  359999999 588999999999999999999887666653 2  4589999993   578


Q ss_pred             EEEEeC
Q psy8875         691 LYWSDW  696 (734)
Q Consensus       691 lywtd~  696 (734)
                      ||+|.+
T Consensus       240 L~vTta  245 (246)
T PF08450_consen  240 LYVTTA  245 (246)
T ss_dssp             EEEEEB
T ss_pred             EEEEeC
Confidence            999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659|consensus

Probab=99.54  E-value=2.2e-13  Score=154.65  Aligned_cols=227  Identities=19%  Similarity=0.269  Sum_probs=167.2

Q ss_pred             cccceeeeeeccceEEeecCCCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC----ceEEEEeC
Q psy8875         472 EGHASLLFARKHDIRKISLDHHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS----ERTVVIEE  544 (734)
Q Consensus       472 ~~~~~l~~~~~~~I~~i~l~~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~----~~~~~~~~  544 (734)
                      ....+|++.+.+-||||..+|...+.+-   ....+-.-||++|..+.||++|...++|+|+.-..+.    +.++++..
T Consensus       373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~  452 (1899)
T KOG4659|consen  373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD  452 (1899)
T ss_pred             cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence            4455788888899999999987665543   3455668899999999999999999999998643222    13343322


Q ss_pred             --------------------CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc------------------
Q psy8875         545 --------------------DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR------------------  586 (734)
Q Consensus       545 --------------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~------------------  586 (734)
                                          .+..|.||||| ..++||++|.  .+|.+++.+|-..+++-.                  
T Consensus       453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~--t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~  529 (1899)
T KOG4659|consen  453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADG--TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD  529 (1899)
T ss_pred             CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEecc--cEEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence                                25689999999 7899999997  679998888866554432                  


Q ss_pred             CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE-------------------EEcCCCCceeEEEecCCCe
Q psy8875         587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV-------------------IVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l-------------------v~~~l~~P~glavD~~~~~  647 (734)
                      -.+.+|..|||||..+.||+.|   ++.|.++..++..+.++                   .+..+..|.+|||. ..|.
T Consensus       530 ~~leWPT~LaV~Pmdnsl~Vld---~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G~  605 (1899)
T KOG4659|consen  530 LQLEWPTSLAVDPMDNSLLVLD---TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDGA  605 (1899)
T ss_pred             eeeecccceeecCCCCeEEEee---cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCce
Confidence            2478999999999999999999   46788888777554221                   11224457899996 7889


Q ss_pred             EEEEeCCCCeEEEEecCCCceEE-EEc------------------------CCCCCCCCeEEEE-ECCEEEEEeCCCCce
Q psy8875         648 LYWVDAKLNEISSCDYNGGNRRL-VLY------------------------SPQTLSHPFSIST-FEDWLYWSDWQQKAI  701 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~~~~-i~~------------------------~~~~~~~P~gl~v-~~~~lywtd~~~~~v  701 (734)
                      ||++++...+|-++..-+++.+. ++.                        ....+..|.+|+| -.+.||++|.++-+|
T Consensus       606 lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~rI  685 (1899)
T KOG4659|consen  606 LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSRI  685 (1899)
T ss_pred             EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchhh
Confidence            99999877766666644443322 221                        1246788999999 678999999998887


Q ss_pred             EEEe
Q psy8875         702 YKAN  705 (734)
Q Consensus       702 ~~~~  705 (734)
                      .++.
T Consensus       686 r~Vs  689 (1899)
T KOG4659|consen  686 RKVS  689 (1899)
T ss_pred             hhhh
Confidence            7553

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=8.4e-13  Score=137.80  Aligned_cols=209  Identities=20%  Similarity=0.285  Sum_probs=149.7

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..-..+..|++..+.|||+|+..++|++.++..|..+.....  ...+.++.+| ..++|..++.+...+.+  -.+..+
T Consensus        24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p--~~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~~~   98 (307)
T COG3386          24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP--GGFSSGALID-AGGRLIACEHGVRLLDP--DTGGKI   98 (307)
T ss_pred             cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC--CCcccceeec-CCCeEEEEccccEEEec--cCCcee
Confidence            334566789999999999999999999999975544444333  2346778887 67788877765333333  223333


Q ss_pred             EEEEc----CCCCCceeEEEeCCCCeEEEEecC-----C-----CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         582 KVLVR----SYLDEPRSLALNPIDGWMYWSDWG-----Q-----NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       582 ~~l~~----~~l~~P~~iavD~~~g~LYwtd~~-----~-----~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      +.+..    ..+..|+.+.+||. |.+|+++.+     .     .++|+|++.+|+..+ ++...+..||||++++.+..
T Consensus        99 t~~~~~~~~~~~~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~t  176 (307)
T COG3386          99 TLLAEPEDGLPLNRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKT  176 (307)
T ss_pred             EEeccccCCCCcCCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCE
Confidence            44332    34678999999985 999999876     2     257999998665444 55556999999999999999


Q ss_pred             EEEEeCCCCeEEEEecC---CC--ceEEEEcCCCCCCCCeEEEEE-CCEEE-EEeCCCCceEEEeccCCCceEEEecc
Q psy8875         648 LYWVDAKLNEISSCDYN---GG--NRRLVLYSPQTLSHPFSISTF-EDWLY-WSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~d---G~--~~~~i~~~~~~~~~P~gl~v~-~~~ly-wtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      ||++|+..++|++++++   |.  +++..+.....-..|.|++++ ++.|| ++-|+...|.++++. |+.+..+...
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP  253 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP  253 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC
Confidence            99999999999999987   32  233233222345789999996 45566 455665699999987 8888877644

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=1.9e-10  Score=124.33  Aligned_cols=224  Identities=15%  Similarity=0.159  Sum_probs=156.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEE--EEe----------CCCCCccceeeeccCCcEEEEeCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTV--VIE----------EDKTIADGLAVDWIYSHIYWTDAH  567 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~--~~~----------~~~~~p~glAvD~~~~~lY~td~~  567 (734)
                      ....|..|++++..+.||+++...+.|..+.++. |.....  ++.          .....|..+.+++.++.||++|.+
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            5668899999999999999999999998888764 322222  121          123567889999999999999999


Q ss_pred             CCeEEEEeCCCCc--e---EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEEE--EEc---C---
Q psy8875         568 KNTIELANFEGTM--R---KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMV--IVS---D---  632 (734)
Q Consensus       568 ~~~I~~~~ldG~~--~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~l--v~~---~---  632 (734)
                      .++|.+.+++...  .   ..+.......|+.|+++|...++|++.. ....|.+.+++  ....+.+  +..   .   
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  243 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG  243 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence            9999999997654  2   2233356778999999999899999984 34678777776  2222211  111   1   


Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC--ceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEE--ec
Q psy8875         633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG--NRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKA--NK  706 (734)
Q Consensus       633 l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~--~~  706 (734)
                      ...|.+|+|++.+++||++....+.|..++++..  ..+.+........+|.+|++  .+++||+++...+.|..+  +.
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            1378999999999999999999999999998543  33333222223457999999  789999999888876655  55


Q ss_pred             cCCCceEEEecccccCCCcc
Q psy8875         707 FTGDNLTAITGVHQTHEPLN  726 (734)
Q Consensus       707 ~~G~~~~~l~~~~~l~~P~~  726 (734)
                      .+|....+.. ...+..|.-
T Consensus       324 ~tG~l~~~~~-~~~~~~p~c  342 (345)
T PF10282_consen  324 DTGKLTPVGS-SVPIPSPVC  342 (345)
T ss_dssp             TTTEEEEEEE-EEESSSEEE
T ss_pred             CCCcEEEecc-cccCCCCEE
Confidence            5666444332 234666653

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.29  E-value=1.1e-09  Score=119.47  Aligned_cols=235  Identities=14%  Similarity=0.142  Sum_probs=167.0

Q ss_pred             ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875         489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK  568 (734)
Q Consensus       489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~  568 (734)
                      ...+......+.....|.++++.+....+||++.....|..+... ....+.....+...|.++++...+.++|.++...
T Consensus        17 ~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~   95 (381)
T COG3391          17 NTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS   95 (381)
T ss_pred             eecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCC
Confidence            333333444444445788999998888999999777766665543 2223333333447899999999999999999988


Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      +.|.+.++........+. ....|.+|++++..++||+++.+ ....|.+++.........+. .-..|.++++|+.+.+
T Consensus        96 ~~v~vid~~~~~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P~~~a~~p~g~~  173 (381)
T COG3391          96 NTVSVIDTATNTVLGSIP-VGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTPTGVAVDPDGNK  173 (381)
T ss_pred             CeEEEEcCcccceeeEee-eccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCcceEEECCCCCe
Confidence            999999965543332221 22389999999999999999985 35788887766543332222 2236899999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEc---CCCCCCCCeEEEE--ECCEEEEEeCCC--CceEEEeccCCCceEEEecccc
Q psy8875         648 LYWVDAKLNEISSCDYNGGNRRLVLY---SPQTLSHPFSIST--FEDWLYWSDWQQ--KAIYKANKFTGDNLTAITGVHQ  720 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~~~~i~~---~~~~~~~P~gl~v--~~~~lywtd~~~--~~v~~~~~~~G~~~~~l~~~~~  720 (734)
                      +|+++...+.|..++..+..... ..   .-.....|.++++  .+.++|+++..+  +.|.+++..++...........
T Consensus       174 vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~  252 (381)
T COG3391         174 VYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS  252 (381)
T ss_pred             EEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc
Confidence            99999999999999977765553 11   1134567888888  678899999988  6899998877776665333344


Q ss_pred             cCCCccCC
Q psy8875         721 THEPLNSP  728 (734)
Q Consensus       721 l~~P~~i~  728 (734)
                      + +|+.+.
T Consensus       253 ~-~~~~v~  259 (381)
T COG3391         253 G-APRGVA  259 (381)
T ss_pred             C-CCCcee
Confidence            5 676664

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.28  E-value=3.4e-09  Score=114.02  Aligned_cols=223  Identities=16%  Similarity=0.173  Sum_probs=148.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEE-EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVV-IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      ...|..|++++..+.||.+....+.|..++++. +...+.+ .......|.++++++.++.||+++...++|.+.+++..
T Consensus        79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            347889999999999999998888888877752 2221111 11234578999999999999999999999999988642


Q ss_pred             ce------EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--CceEEEEE-----c---CCCCceeEEEec
Q psy8875         580 MR------KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG--SHRNMVIV-----S---DIKWPNGLTLDL  643 (734)
Q Consensus       580 ~~------~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG--~~~~~lv~-----~---~l~~P~glavD~  643 (734)
                      ..      ..+.......|++++++|...+||.++.. ...|...+++.  ...+.+..     .   ...+|.+|++++
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            11      11111234679999999998999999864 36777777752  12222211     1   123566799999


Q ss_pred             CCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEE--eccCCCceEEEec
Q psy8875         644 VQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKA--NKFTGDNLTAITG  717 (734)
Q Consensus       644 ~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~--~~~~G~~~~~l~~  717 (734)
                      .+++||+++...+.|..++++  +...+.+... .....|.++++  .+.+||++....+.|..+  +..+|. ++.+..
T Consensus       238 dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~-~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~-l~~~~~  315 (330)
T PRK11028        238 DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ-PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGL-LTELGR  315 (330)
T ss_pred             CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE-eccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCc-EEEccc
Confidence            899999998888888887764  3333322221 12346777877  578999999877765554  444554 444443


Q ss_pred             ccccCCCccC
Q psy8875         718 VHQTHEPLNS  727 (734)
Q Consensus       718 ~~~l~~P~~i  727 (734)
                      ......|..+
T Consensus       316 ~~~g~~P~~~  325 (330)
T PRK11028        316 YAVGQGPMWV  325 (330)
T ss_pred             cccCCCceEE
Confidence            3334566554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.27  E-value=4.4e-09  Score=113.08  Aligned_cols=224  Identities=13%  Similarity=0.111  Sum_probs=146.9

Q ss_pred             ccceEEeecCC-CceE--EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEEEeCCCCCccceeeecc
Q psy8875         482 KHDIRKISLDH-HEMT--AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVVIEEDKTIADGLAVDWI  557 (734)
Q Consensus       482 ~~~I~~i~l~~-~~~~--~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~~~~~~~~p~glAvD~~  557 (734)
                      +..|+.++++. ...+  ..+.....+..|++++..+.||++....+.|+.++++. +....+........|..|++++.
T Consensus        11 ~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~   90 (330)
T PRK11028         11 SQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQ   90 (330)
T ss_pred             CCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCC
Confidence            35566666642 2222  22333456788899988889999988778887766652 32221111112347899999999


Q ss_pred             CCcEEEEeCCCCeEEEEeCC--CCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE------EE
Q psy8875         558 YSHIYWTDAHKNTIELANFE--GTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN------MV  628 (734)
Q Consensus       558 ~~~lY~td~~~~~I~~~~ld--G~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~------~l  628 (734)
                      ++.||.+....+.|.+.+++  |...+.+. ......|.+++++|..++||+++.+. .+|...+++.....      .+
T Consensus        91 g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~-~~v~v~d~~~~g~l~~~~~~~~  169 (330)
T PRK11028         91 GRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKE-DRIRLFTLSDDGHLVAQEPAEV  169 (330)
T ss_pred             CCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCC-CEEEEEEECCCCcccccCCCce
Confidence            99999999888888888775  43222221 13456799999999999999999764 67877777532111      01


Q ss_pred             EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEEc---CCC---CCCCCeEEEE--ECCEEEEEeCCC
Q psy8875         629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVLY---SPQ---TLSHPFSIST--FEDWLYWSDWQQ  698 (734)
Q Consensus       629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~~---~~~---~~~~P~gl~v--~~~~lywtd~~~  698 (734)
                      ....-..|+++++++.+++||+++...+.|..++++.  ...+.+..   .+.   ...+|.+|++  .+.+||+++...
T Consensus       170 ~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~  249 (330)
T PRK11028        170 TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA  249 (330)
T ss_pred             ecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC
Confidence            1112356999999999999999999889999988863  22222211   111   1124556666  567899998877


Q ss_pred             CceEEEec
Q psy8875         699 KAIYKANK  706 (734)
Q Consensus       699 ~~v~~~~~  706 (734)
                      +.|..++.
T Consensus       250 ~~I~v~~i  257 (330)
T PRK11028        250 SLISVFSV  257 (330)
T ss_pred             CeEEEEEE
Confidence            77766654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.26  E-value=3.9e-09  Score=114.01  Aligned_cols=244  Identities=17%  Similarity=0.192  Sum_probs=160.2

Q ss_pred             cceEEeec--CCCceEEE--ecCCcceEEEeeeccCCeEEEEEeC---CCcEEEEecCCC--CceEEE-EeCCCCCccce
Q psy8875         483 HDIRKISL--DHHEMTAI--VNSTKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEG--SERTVV-IEEDKTIADGL  552 (734)
Q Consensus       483 ~~I~~i~l--~~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g--~~~~~~-~~~~~~~p~gl  552 (734)
                      ..|+.+.+  +...++.+  +....+|.-|++++..+.||.++..   .+.|..+.++..  ....+- +......|..|
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            34555555  33344332  3456788889999999999999884   577777666642  221111 11245678899


Q ss_pred             eeeccCCcEEEEeCCCCeEEEEeCC--CCceEE--EEc----------CCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875         553 AVDWIYSHIYWTDAHKNTIELANFE--GTMRKV--LVR----------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERA  618 (734)
Q Consensus       553 AvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~--l~~----------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~  618 (734)
                      ++|+.++.||+++...+.|.++.++  |.....  ++.          ....+|..+.++|..++||++|.+. .+|++.
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~  171 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVY  171 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEE
Confidence            9999999999999999999888875  443333  221          2356888999999999999999875 789888


Q ss_pred             ccCCCc--eE---EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEc---C---CCCCCCCeEEE
Q psy8875         619 GMDGSH--RN---MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLY---S---PQTLSHPFSIS  685 (734)
Q Consensus       619 ~ldG~~--~~---~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~---~---~~~~~~P~gl~  685 (734)
                      +++...  ..   .+....-..|+.|++++.++++|++....+.|..++++  ....+.+..   .   ......|.+|+
T Consensus       172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~  251 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA  251 (345)
T ss_dssp             EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred             EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence            887654  21   12223446799999999999999999999999999988  222222211   1   11112678888


Q ss_pred             EE--CCEEEEEeCCCCceEEEec--cCCCceEEEecccc-cCCCccCC
Q psy8875         686 TF--EDWLYWSDWQQKAIYKANK--FTGDNLTAITGVHQ-THEPLNSP  728 (734)
Q Consensus       686 v~--~~~lywtd~~~~~v~~~~~--~~G~~~~~l~~~~~-l~~P~~i~  728 (734)
                      +.  +.+||+++.+.+.|..+..  .+|+ ++.+..... -.+|..++
T Consensus       252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~  298 (345)
T PF10282_consen  252 ISPDGRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFA  298 (345)
T ss_dssp             E-TTSSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEE
T ss_pred             EecCCCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEE
Confidence            84  7899999999988766654  4444 333322211 33465553

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4659|consensus

Probab=99.26  E-value=2.3e-10  Score=130.79  Aligned_cols=197  Identities=19%  Similarity=0.279  Sum_probs=144.2

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCccceeeeccCCcEEEEeCCCCeEEEEe-CCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEG  578 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~-ldG  578 (734)
                      +-.|++||+-+ .+.||+-|.  +.|.|+..+ |+..+++.-  .....-.-|||+|+.+.||++|...++|+++. +.+
T Consensus       364 L~aPvala~a~-DGSl~VGDf--NyIRRI~~d-g~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~  439 (1899)
T KOG4659|consen  364 LFAPVALAYAP-DGSLIVGDF--NYIRRISQD-GQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP  439 (1899)
T ss_pred             eeceeeEEEcC-CCcEEEccc--hheeeecCC-CceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence            45789999876 789999884  578898888 665555432  23344557999999999999999999988863 433


Q ss_pred             Cc----eEEEEc--------------------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875         579 TM----RKVLVR--------------------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV----  630 (734)
Q Consensus       579 ~~----~~~l~~--------------------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~----  630 (734)
                      +.    -.+++.                    ..|..|+||||| ..|.|||+|   ...|.+++.+|-.++++-+    
T Consensus       440 ~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD---~t~IR~iD~~giIstlig~~~~~  515 (1899)
T KOG4659|consen  440 QDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFAD---GTRIRVIDTTGIISTLIGTTPDQ  515 (1899)
T ss_pred             cccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEc-cCCcEEEec---ccEEEEeccCceEEEeccCCCCc
Confidence            21    222221                    247899999999 479999999   3578888888765544321    


Q ss_pred             --------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC------------------CCCC
Q psy8875         631 --------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------------------PQTL  678 (734)
Q Consensus       631 --------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------------------~~~~  678 (734)
                                    -.+.||..|||||..+.||+.|  ++.|.++..++.-+ +++..                  +..+
T Consensus       516 ~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl  592 (1899)
T KOG4659|consen  516 HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTL  592 (1899)
T ss_pred             cCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhh
Confidence                          2378999999999999999999  56898888776544 22211                  1223


Q ss_pred             CCCeEEEE-ECCEEEEEeCCCCceEEEeccCC
Q psy8875         679 SHPFSIST-FEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       679 ~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      ..|.+|++ ..|.||+++....+|.|+.+.+.
T Consensus       593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~t  624 (1899)
T KOG4659|consen  593 LIQRDIAVGTDGALYVAESDGRRINRVRKLST  624 (1899)
T ss_pred             hhhhceeecCCceEEEEeccchhhhheEEecc
Confidence            44678999 67999999999988888877553

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=6.2e-09  Score=113.71  Aligned_cols=209  Identities=13%  Similarity=0.100  Sum_probs=156.7

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC--CCeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH--KNTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~--~~~I~~~~ldG~~  580 (734)
                      ..|.++++.....++|..+...+.|..+++........+.. + ..|.+|++++.+++||+++..  +++|.+++.....
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-G-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-c-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence            66789999998999999998889999988653222222222 2 289999999999999999994  6899998877554


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE----EEEcCCCCceeEEEecCCCeEEEEeCCC-
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM----VIVSDIKWPNGLTLDLVQRRLYWVDAKL-  655 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~----lv~~~l~~P~glavD~~~~~LYw~D~~~-  655 (734)
                      ....+ .....|.+++++|...++|.++.. ...|...++.+.....    ........|.+++|++.+.++|+++... 
T Consensus       152 ~~~~~-~vG~~P~~~a~~p~g~~vyv~~~~-~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~  229 (381)
T COG3391         152 VTATI-PVGNTPTGVAVDPDGNKVYVTNSD-DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG  229 (381)
T ss_pred             EEEEE-ecCCCcceEEECCCCCeEEEEecC-CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence            43332 333478999999999999999944 4788888876654332    0123467899999999999999999877 


Q ss_pred             -CeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         656 -NEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       656 -~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                       +.|.+++...............+ .|+++++  .+..+|+++...+.|..++..+......+.
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence             68998887766555442222345 7888888  688999998888899999877766655543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.17  E-value=5.3e-09  Score=113.84  Aligned_cols=197  Identities=21%  Similarity=0.326  Sum_probs=131.4

Q ss_pred             CcceEEEeeeccCCeEEEEEeC-----------CC-cEEEEecCCC--C-ceEEEEeCCCCCccceeeeccCCcEEEEeC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDIS-----------EK-KIYKAPIDEG--S-ERTVVIEEDKTIADGLAVDWIYSHIYWTDA  566 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~-----------~~-~I~~~~l~~g--~-~~~~~~~~~~~~p~glAvD~~~~~lY~td~  566 (734)
                      +..|++|++|. .++||+++..           .+ +|+++.-..+  . ....++..++..|.||++.. .+ ||+++.
T Consensus        13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~   89 (367)
T TIGR02604        13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP   89 (367)
T ss_pred             cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC
Confidence            78999999996 6889999842           22 7877764222  2 23345556788999999974 45 999975


Q ss_pred             CCCeEEEE-eCCCC-----ceEEEEcCC-------CCCceeEEEeCCCCeEEEEecCC------------------CceE
Q psy8875         567 HKNTIELA-NFEGT-----MRKVLVRSY-------LDEPRSLALNPIDGWMYWSDWGQ------------------NAKI  615 (734)
Q Consensus       567 ~~~~I~~~-~ldG~-----~~~~l~~~~-------l~~P~~iavD~~~g~LYwtd~~~------------------~~~I  615 (734)
                        ..|.++ +.+|.     .+++|+..-       ...+.+|+++| .|+||++....                  .+.|
T Consensus        90 --~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        90 --PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             --CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceE
Confidence              467766 44432     344454321       23488999998 68999987421                  1479


Q ss_pred             EEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CC--------ce----------EEE----
Q psy8875         616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GG--------NR----------RLV----  671 (734)
Q Consensus       616 ~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~--------~~----------~~i----  671 (734)
                      +|.+.+|+..+++ ...+..|+||++|+ .+.||++|.......++..-  |.        ..          ..+    
T Consensus       167 ~r~~pdg~~~e~~-a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~  244 (367)
T TIGR02604       167 FRYNPDGGKLRVV-AHGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGE  244 (367)
T ss_pred             EEEecCCCeEEEE-ecCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCcccccccccccccccccc
Confidence            9999999877654 46799999999996 78899998755544444311  10        00          000    


Q ss_pred             --------Ec---CCCCCCCCeEEEEE---------CCEEEEEeCCCCceEEEec
Q psy8875         672 --------LY---SPQTLSHPFSISTF---------EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       672 --------~~---~~~~~~~P~gl~v~---------~~~lywtd~~~~~v~~~~~  706 (734)
                              +.   .-.....|.|++++         .+.||+++|..+.|+++..
T Consensus       245 ~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l  299 (367)
T TIGR02604       245 WRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL  299 (367)
T ss_pred             cccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence                    00   00011258898886         3789999999999998864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.12  E-value=4e-08  Score=102.85  Aligned_cols=228  Identities=16%  Similarity=0.203  Sum_probs=146.9

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe----CCCCCc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE----EDKTIA  549 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~----~~~~~p  549 (734)
                      .|+|.+  ...|.+.+........+........++.++ ..+.|..++.   .+++.+++.+...+.+..    ..+..|
T Consensus        38 ~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~---g~~~~~~~~~~~~t~~~~~~~~~~~~r~  113 (307)
T COG3386          38 ALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEH---GVRLLDPDTGGKITLLAEPEDGLPLNRP  113 (307)
T ss_pred             EEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEcc---ccEEEeccCCceeEEeccccCCCCcCCC
Confidence            355544  567888887644444443322234444455 3566665542   244444443443233322    234678


Q ss_pred             cceeeeccCCcEEEEeCC-----------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875         550 DGLAVDWIYSHIYWTDAH-----------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA  618 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~-----------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~  618 (734)
                      ..+.+|+. +.+|+++..           .++|++++.+|...+ ++...+..|+|||++|....||++|.. ..+|++.
T Consensus       114 ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~-~~~i~r~  190 (307)
T COG3386         114 NDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTP-ANRIHRY  190 (307)
T ss_pred             CceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCC-CCeEEEE
Confidence            89999955 899999876           246899988666554 444568899999999999999999964 4799999


Q ss_pred             ccC---CC--ceEEEEEc--CCCCceeEEEecCCCeEE-EEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC--
Q psy8875         619 GMD---GS--HRNMVIVS--DIKWPNGLTLDLVQRRLY-WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE--  688 (734)
Q Consensus       619 ~ld---G~--~~~~lv~~--~l~~P~glavD~~~~~LY-w~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~--  688 (734)
                      .++   |.  ++...+..  .-..|-|+++| .++.|| ++-+....|.+++.+|.....+.. +  ...|..+++-+  
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~l-P--~~~~t~~~FgG~~  266 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKL-P--VKRPTNPAFGGPD  266 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEEC-C--CCCCccceEeCCC
Confidence            887   32  12222322  34679999999 677777 455555699999999887776653 1  26778888865  


Q ss_pred             -CEEEEEeCCCCc--eEEEeccCCCceEE
Q psy8875         689 -DWLYWSDWQQKA--IYKANKFTGDNLTA  714 (734)
Q Consensus       689 -~~lywtd~~~~~--v~~~~~~~G~~~~~  714 (734)
                       +.||+|....+.  .+..+++.|....+
T Consensus       267 ~~~L~iTs~~~~~~~~~~~~~~~G~lf~~  295 (307)
T COG3386         267 LNTLYITSARSGMSRMLTADPLGGGLFSL  295 (307)
T ss_pred             cCEEEEEecCCCCCccccccccCceEEEE
Confidence             899999876532  22234444544333

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.07  E-value=7.5e-08  Score=97.45  Aligned_cols=200  Identities=13%  Similarity=0.103  Sum_probs=125.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~  579 (734)
                      ...+.||+|++.+++||-+.-..+.|+.++++ |.....+.-.+...++||++- -++.+.+++...++|.++.++  +.
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----T
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEecccc
Confidence            44689999999999999988788899999987 444333323467889999995 445555566667888888773  22


Q ss_pred             c--eEE---EE--cC--CCCCceeEEEeCCCCeEEEEecCCCceEEEecc--CCCceEEEEE-------cCCCCceeEEE
Q psy8875         580 M--RKV---LV--RS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM--DGSHRNMVIV-------SDIKWPNGLTL  641 (734)
Q Consensus       580 ~--~~~---l~--~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l--dG~~~~~lv~-------~~l~~P~glav  641 (734)
                      .  +..   +-  ..  .-....|||.|+.+++||++.......|+..+.  .+....+...       ..+..|.+|++
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEE
Confidence            1  111   11  11  223468999999999999997655557887776  3322222221       13567899999


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC------CCCCCCeEEEE-ECCEEEEEeCCCCceEEE
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP------QTLSHPFSIST-FEDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~  704 (734)
                      |+.++.||+.....++|..++.+|.-+..+.-..      ..+++|-||++ .+|.||++.-- +..+++
T Consensus       179 ~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEp-Nlfy~f  247 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEP-NLFYRF  247 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETT-TEEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCC-ceEEEe
Confidence            9999999999999999999999998655543322      34678999999 56899998853 455554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG4499|consensus

Probab=99.06  E-value=1.7e-08  Score=96.83  Aligned_cols=205  Identities=16%  Similarity=0.229  Sum_probs=125.5

Q ss_pred             EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC-cEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875         506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS-HIYWTDAHKNTIELANFEGTMRKVL  584 (734)
Q Consensus       506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~-~lY~td~~~~~I~~~~ldG~~~~~l  584 (734)
                      .+..|+..++.|||+|+..+.|.|.+..........+....  ..|.++--.++ ..|.+--+ .+....+.+|....++
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G-~kf~i~nwd~~~~~a~   94 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCG-SKFVIVNWDGVSESAK   94 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeec-ceEEEEEcccccceee
Confidence            56678888999999999888777765543222222222110  11222211111 13333222 2344455665543333


Q ss_pred             EcCC---------CCCceeEEEeCCCCeEEEEecCC--------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         585 VRSY---------LDEPRSLALNPIDGWMYWSDWGQ--------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       585 ~~~~---------l~~P~~iavD~~~g~LYwtd~~~--------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      +...         -.+-+.--|||.. +.|.-....        .+.+++--+++. .+ ++...+..||||++|...+.
T Consensus        95 v~~t~~ev~~d~kknR~NDgkvdP~G-ryy~GtMad~~~~le~~~g~Ly~~~~~h~-v~-~i~~~v~IsNgl~Wd~d~K~  171 (310)
T KOG4499|consen   95 VYRTLFEVQPDRKKNRLNDGKVDPDG-RYYGGTMADFGDDLEPIGGELYSWLAGHQ-VE-LIWNCVGISNGLAWDSDAKK  171 (310)
T ss_pred             eeeeccccCchHHhcccccCccCCCC-ceeeeeeccccccccccccEEEEeccCCC-ce-eeehhccCCccccccccCcE
Confidence            2211         1233566678754 446543221        133444333433 33 34567888999999999999


Q ss_pred             EEEEeCCCCeEEEEecC--C---CceEEEEcCCC----CCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         648 LYWVDAKLNEISSCDYN--G---GNRRLVLYSPQ----TLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~d--G---~~~~~i~~~~~----~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +|++|+.+-.|...++|  +   ++|++|+.-..    ....|.|+++ .+|.||++-|..++|+++++.+|+.+..+.
T Consensus       172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik  250 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK  250 (310)
T ss_pred             EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence            99999999999777744  3   47777765321    3345889999 579999999999999999999999877664

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.03  E-value=1.6e-10  Score=79.75  Aligned_cols=36  Identities=58%  Similarity=1.429  Sum_probs=34.1

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      +|+ .++|+|.+|.||+..|+|||..||.||+||.+|
T Consensus         2 ~C~-~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCP-PGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSS-TTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCc-CCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence            677 899999999999999999999999999999876

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.97  E-value=4.9e-07  Score=96.02  Aligned_cols=234  Identities=13%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEE-EeCC-----CC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVV-IEED-----KT  547 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~-~~~~-----~~  547 (734)
                      ..|..|+.+..++...++....|.++ +.+..+.||++..         ....|..+++........+ +...     ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~  105 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT  105 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence            46888888877776666666788886 8888999999998         6778888888754432222 2111     23


Q ss_pred             CccceeeeccCCcEEEEeCC-CCeEEEEeCC------------------------------CCceEEEEc---------C
Q psy8875         548 IADGLAVDWIYSHIYWTDAH-KNTIELANFE------------------------------GTMRKVLVR---------S  587 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~-~~~I~~~~ld------------------------------G~~~~~l~~---------~  587 (734)
                      .|..+++.+.++.||+++.. ...|.++++.                              |+...+-+.         .
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~  185 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPT  185 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeee
Confidence            45589999999999998865 5555555543                              222221000         0


Q ss_pred             C---------CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-----cC----CCCcee---EEEecCCC
Q psy8875         588 Y---------LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-----SD----IKWPNG---LTLDLVQR  646 (734)
Q Consensus       588 ~---------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-----~~----l~~P~g---lavD~~~~  646 (734)
                      .         ..+|   ++.+..|.++|....  +.|..+++.+........     ..    --.|.|   +++.+.++
T Consensus       186 ~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~  260 (352)
T TIGR02658       186 EVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD  260 (352)
T ss_pred             eeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence            0         1233   223334666666532  789999886654333211     11    113555   99999999


Q ss_pred             eEEEEe-C--------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC-EEEEEeCCCCceEEEeccCCCceEE
Q psy8875         647 RLYWVD-A--------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED-WLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       647 ~LYw~D-~--------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~-~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      +||++. .        ..++|+.++.....+...+.   ....|.+|++  ++. +||.+++.++.|..++..+++.+..
T Consensus       261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~---vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~  337 (352)
T TIGR02658       261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE---LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSS  337 (352)
T ss_pred             EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe---CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEee
Confidence            999953 2        22589998876554444332   2346788888  567 8999999999999999988888887


Q ss_pred             EecccccCCCccC
Q psy8875         715 ITGVHQTHEPLNS  727 (734)
Q Consensus       715 l~~~~~l~~P~~i  727 (734)
                      +...  -..|..+
T Consensus       338 i~~v--g~~P~~~  348 (352)
T TIGR02658       338 VNQL--GRGPQVI  348 (352)
T ss_pred             eccC--CCCCeEE
Confidence            7332  3455544

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.97  E-value=2.8e-10  Score=77.70  Aligned_cols=35  Identities=60%  Similarity=1.487  Sum_probs=32.6

Q ss_pred             CCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        54 C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      |+ +.+|+|.+|.||+..|+|||+.||+|||||.+|
T Consensus         1 C~-~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CP-PNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CC-CCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence            55 689999999999999999999999999999876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.96  E-value=5.9e-07  Score=92.01  Aligned_cols=223  Identities=14%  Similarity=0.155  Sum_probs=151.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEE---EEeCC--------CCCccceeeeccCCcEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTV---VIEED--------KTIADGLAVDWIYSHIYWTDAHKN  569 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~---~~~~~--------~~~p~glAvD~~~~~lY~td~~~~  569 (734)
                      ...|.-|++|...+.||.+++..+.|.+..+.. |....+   +...+        ...+...-+++.++.|+..|.+..
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            345588999998899999999999888777643 433222   11111        112456778888999999999999


Q ss_pred             eEEEEeCCCCceEE---EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--eEEEEE--------cCCCCc
Q psy8875         570 TIELANFEGTMRKV---LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--RNMVIV--------SDIKWP  636 (734)
Q Consensus       570 ~I~~~~ldG~~~~~---l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--~~~lv~--------~~l~~P  636 (734)
                      +|...+++......   ........||.|+++|...+.|... ..++.|.+...++..  .+.+..        .+-.+-
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~-EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN-ELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe-ccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            99999886322211   1115567899999999999999987 345788888777632  111111        123456


Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEe--cCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCC--ceEEEeccCCC
Q psy8875         637 NGLTLDLVQRRLYWVDAKLNEISSCD--YNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQK--AIYKANKFTGD  710 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~~~~I~~~~--~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~--~v~~~~~~~G~  710 (734)
                      .+|.|.+.++.||.++.+.+.|..+.  .+|+..+.+...+.....|.+..+  .++.|+.+.-+++  .|+++++.+|.
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence            78999999999999999888776655  455555555443344455877777  6788888876554  56778888887


Q ss_pred             ceEEEecccccCCCcc
Q psy8875         711 NLTAITGVHQTHEPLN  726 (734)
Q Consensus       711 ~~~~l~~~~~l~~P~~  726 (734)
                      ...... ....+.|+-
T Consensus       327 L~~~~~-~~~~p~Pvc  341 (346)
T COG2706         327 LTLLGR-YAVVPEPVC  341 (346)
T ss_pred             EEeccc-ccCCCCcEE
Confidence            544433 234556653

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.94  E-value=1.5e-06  Score=91.14  Aligned_cols=236  Identities=11%  Similarity=0.035  Sum_probs=151.3

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIY  562 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY  562 (734)
                      ..|+.+++........+.....+..+++++..+.||.+....+.|+..++..+... ..+. ....|.++++++.+..|+
T Consensus        53 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~-~~~~-~~~~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        53 DTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVL-AEIP-VGVEPEGMAVSPDGKIVV  130 (300)
T ss_pred             CeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEE-eEee-CCCCcceEEECCCCCEEE
Confidence            45666776655444333333456778898888888888766778998888743221 1222 223578999997666666


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEE-E-----cCCCC
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVI-V-----SDIKW  635 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv-~-----~~l~~  635 (734)
                      ++......+...++........+ .....|..+++++...+||++.. ..+.|...++..... ..+- .     .....
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~  208 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNV-LVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQ  208 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEE-EcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccccccccCC
Confidence            66554445666666543322211 12346889999988777777642 236777777754322 2111 1     11235


Q ss_pred             ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875         636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLT  713 (734)
Q Consensus       636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~  713 (734)
                      |.++++++.+.++|++....++|..+++........+..   ...|.+|++  .+.+||.+....+.|..++..+++.++
T Consensus       209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~  285 (300)
T TIGR03866       209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV---GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIK  285 (300)
T ss_pred             ccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe---CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            778999988889999887778899888765443332221   234777877  567888887777889999998888877


Q ss_pred             EEecccccCCCccCC
Q psy8875         714 AITGVHQTHEPLNSP  728 (734)
Q Consensus       714 ~l~~~~~l~~P~~i~  728 (734)
                      .+..   -..|.+|+
T Consensus       286 ~~~~---~~~~~~~~  297 (300)
T TIGR03866       286 SIKV---GRLPWGVV  297 (300)
T ss_pred             EEEc---ccccceeE
Confidence            7763   35676664

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.93  E-value=2.8e-09  Score=76.30  Aligned_cols=42  Identities=48%  Similarity=1.032  Sum_probs=38.9

Q ss_pred             CeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEec
Q psy8875         602 GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDL  643 (734)
Q Consensus       602 g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~  643 (734)
                      ++|||+|++..++|++++|||+.+++++...+.+|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            589999998655999999999999999999999999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.89  E-value=3e-06  Score=88.91  Aligned_cols=229  Identities=10%  Similarity=0.018  Sum_probs=144.4

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ...|+.+++........+.....+.++++++..+.||.+....+.|+..++..+.....+ . ....+..+++++.++.|
T Consensus        10 d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~-~-~~~~~~~~~~~~~g~~l   87 (300)
T TIGR03866        10 DNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL-P-SGPDPELFALHPNGKIL   87 (300)
T ss_pred             CCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec-c-CCCCccEEEECCCCCEE
Confidence            345666666544443444444557789998877788888877788998888754432222 2 22457788998888889


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav  641 (734)
                      |.+....+.|.+.++........+ .....|.+++++|...+|+.+... ...+...++........+. .-..|..+++
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~  164 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEI-PVGVEPEGMAVSPDGKIVVNTSET-TNMAHFIDTKTYEIVDNVL-VDQRPRFAEF  164 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEe-eCCCCcceEEECCCCCEEEEEecC-CCeEEEEeCCCCeEEEEEE-cCCCccEEEE
Confidence            988777789999998764322222 223468999999876666665532 2344444554332221111 2245788999


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCce-EEEE-cC---CCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNR-RLVL-YS---PQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~-~~i~-~~---~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      ++.+.+||++-...+.|..+++..... +.+. ..   ......|.++++  .+..+|++....++|..++..+++.+..
T Consensus       165 s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~  244 (300)
T TIGR03866       165 TADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY  244 (300)
T ss_pred             CCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            888888887765667888888765432 2221 10   011224667777  4567788877777888888777766554


Q ss_pred             E
Q psy8875         715 I  715 (734)
Q Consensus       715 l  715 (734)
                      +
T Consensus       245 ~  245 (300)
T TIGR03866       245 L  245 (300)
T ss_pred             E
Confidence            4

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.89  E-value=4.5e-07  Score=94.67  Aligned_cols=191  Identities=21%  Similarity=0.284  Sum_probs=120.9

Q ss_pred             ceEEEeeeccCCeEEEEEeCC------------CcEEEEecCCCCc-eEEEEeCCCC----CccceeeeccC-----CcE
Q psy8875         504 SATAIDFVFRTGMIFWSDISE------------KKIYKAPIDEGSE-RTVVIEEDKT----IADGLAVDWIY-----SHI  561 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~------------~~I~~~~l~~g~~-~~~~~~~~~~----~p~glAvD~~~-----~~l  561 (734)
                      ++.++.+|. .++||+.|.+.            .+|+.+++..+.. +++.+...+.    ....|+||...     +.+
T Consensus         2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred             cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence            345677773 67888888642            3678888875443 2333333322    34469999754     489


Q ss_pred             EEEeCCCCeEEEEeCCC-CceEEEEcCC------------------CCCceeEEEeC---CCCeEEEEecCCCceEEEec
Q psy8875         562 YWTDAHKNTIELANFEG-TMRKVLVRSY------------------LDEPRSLALNP---IDGWMYWSDWGQNAKIERAG  619 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG-~~~~~l~~~~------------------l~~P~~iavD~---~~g~LYwtd~~~~~~I~~~~  619 (734)
                      |+||.....|.++++.. +.++++-...                  .....||++.|   ..+.|||.-.. ..+++++.
T Consensus        81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~  159 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVP  159 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEE
T ss_pred             EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEE
Confidence            99999999999999854 4444433211                  12246788877   34589999854 35677765


Q ss_pred             c----CCCc--------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC----CceEEEEcCCCCCCCCeE
Q psy8875         620 M----DGSH--------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG----GNRRLVLYSPQTLSHPFS  683 (734)
Q Consensus       620 l----dG~~--------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG----~~~~~i~~~~~~~~~P~g  683 (734)
                      .    +.+.        ....+..+.....|+++|. ++.||+++...+.|.+.+.++    .+.++|++.+..+.+|.+
T Consensus       160 T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  160 TSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            3    2211        1112223334568999995 999999999999999999988    567778877666999999


Q ss_pred             EEEEC---CEEEEEeCC
Q psy8875         684 ISTFE---DWLYWSDWQ  697 (734)
Q Consensus       684 l~v~~---~~lywtd~~  697 (734)
                      |++..   ++||+....
T Consensus       239 ~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEE-T--TS-EEEEE-S
T ss_pred             eeeccccCceEEEEECc
Confidence            99977   999998744

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.84  E-value=1.6e-07  Score=102.24  Aligned_cols=152  Identities=15%  Similarity=0.196  Sum_probs=110.2

Q ss_pred             CCCCccceeeeccCCcEEEEeCC-----------C-CeEEEEeC---CCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEe
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAH-----------K-NTIELANF---EGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSD  608 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~-----------~-~~I~~~~l---dG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd  608 (734)
                      .+..|.+||+| ..++||+++..           . .+|.+..-   ||.. ...++...+..|.||++.+ .| ||+++
T Consensus        12 ~~~~P~~ia~d-~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~   88 (367)
T TIGR02604        12 LLRNPIAVCFD-ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVAT   88 (367)
T ss_pred             ccCCCceeeEC-CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeC
Confidence            48899999999 55889999852           2 37877754   4554 2345557788999999986 45 99997


Q ss_pred             cCCCceEEEe-ccCCC-----ceEEEEEcC-------CCCceeEEEecCCCeEEEEeCC-------------------CC
Q psy8875         609 WGQNAKIERA-GMDGS-----HRNMVIVSD-------IKWPNGLTLDLVQRRLYWVDAK-------------------LN  656 (734)
Q Consensus       609 ~~~~~~I~~~-~ldG~-----~~~~lv~~~-------l~~P~glavD~~~~~LYw~D~~-------------------~~  656 (734)
                         ...|++. +.+|.     .+++|+..-       .+.+++|++++ .++||+++..                   .+
T Consensus        89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g  164 (367)
T TIGR02604        89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGG  164 (367)
T ss_pred             ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCc
Confidence               3568776 44442     344454421       24488999985 6799998762                   15


Q ss_pred             eEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875         657 EISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~  706 (734)
                      .|++++.+|+..+++..   .+..|.||++ ..+.||++|.......+++.
T Consensus       165 ~i~r~~pdg~~~e~~a~---G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~  212 (367)
T TIGR02604       165 GLFRYNPDGGKLRVVAH---GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTP  212 (367)
T ss_pred             eEEEEecCCCeEEEEec---CcCCCccceECCCCCEEEEccCCCceeEEcc
Confidence            79999999998877653   3789999999 57889999987666666653

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.79  E-value=5e-06  Score=85.34  Aligned_cols=228  Identities=15%  Similarity=0.193  Sum_probs=152.6

Q ss_pred             ccceEEeecCCC----ceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeC---CCCCccce
Q psy8875         482 KHDIRKISLDHH----EMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEE---DKTIADGL  552 (734)
Q Consensus       482 ~~~I~~i~l~~~----~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~---~~~~p~gl  552 (734)
                      +..|+++.++..    ....++..+.+|.-|++++..+.||.....  .+.|-.+.++..+.+..++..   ....|.-|
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            456777777632    233456678899999999999999999876  677766666643233333321   23456889


Q ss_pred             eeeccCCcEEEEeCCCCeEEEEeC--CCCceEEE---EcC-C-------CCCceeEEEeCCCCeEEEEecCCCceEEEec
Q psy8875         553 AVDWIYSHIYWTDAHKNTIELANF--EGTMRKVL---VRS-Y-------LDEPRSLALNPIDGWMYWSDWGQNAKIERAG  619 (734)
Q Consensus       553 AvD~~~~~lY~td~~~~~I~~~~l--dG~~~~~l---~~~-~-------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~  619 (734)
                      ++|..++.||.++...+.|.+..+  +|....++   ... .       -.++-...++|.+.+|+..|.|. .+|...+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~-Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGT-DRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCC-ceEEEEE
Confidence            999999999999999999988766  56544432   111 1       12355778899999999999885 6776666


Q ss_pred             cC-CCceEE--EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC--ceEEEE---cCCCCC---CCCeEEEE--
Q psy8875         620 MD-GSHRNM--VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG--NRRLVL---YSPQTL---SHPFSIST--  686 (734)
Q Consensus       620 ld-G~~~~~--lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~i~---~~~~~~---~~P~gl~v--  686 (734)
                      ++ |.....  .....-.-|+=|++-+..+..|.+.--+++|....+++.  ..+.+.   .-+...   .+.-+|.+  
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            64 432211  111344568999999999999999988899999998874  222221   111111   12234555  


Q ss_pred             ECCEEEEEeCCCCce--EEEeccCCC
Q psy8875         687 FEDWLYWSDWQQKAI--YKANKFTGD  710 (734)
Q Consensus       687 ~~~~lywtd~~~~~v--~~~~~~~G~  710 (734)
                      .+.+||.++.+.++|  ++++..+|+
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~  279 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGK  279 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCE
Confidence            688999999987765  456666565

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.79  E-value=3.3e-09  Score=73.19  Aligned_cols=35  Identities=60%  Similarity=1.303  Sum_probs=33.3

Q ss_pred             CcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       134 ~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      +|...+|+|.++.||+..|+|||..||.||+||.+
T Consensus         2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCCeeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence            68899999999999999999999999999999976

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.77  E-value=2.2e-08  Score=71.71  Aligned_cols=41  Identities=34%  Similarity=0.695  Sum_probs=39.3

Q ss_pred             CcEEEEeCCCC-eEEEEeCCCCceEEEEcCCCCCceeEEEeC
Q psy8875         559 SHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLALNP  599 (734)
Q Consensus       559 ~~lY~td~~~~-~I~~~~ldG~~~~~l~~~~l~~P~~iavD~  599 (734)
                      ++|||||.... .|.+++++|+.+++++...+.+|+||||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            58999999999 999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.76  E-value=8.1e-07  Score=95.13  Aligned_cols=203  Identities=24%  Similarity=0.283  Sum_probs=129.5

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe------CCCCCccceeeec---cCCcEEEEeCCC----
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE------EDKTIADGLAVDW---IYSHIYWTDAHK----  568 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~------~~~~~p~glAvD~---~~~~lY~td~~~----  568 (734)
                      +.+|++|++.+. ++||+++. .++|+++..+ +.....+..      .+...+.|||+++   .++.||++-...    
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~   77 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG   77 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEET-TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred             CCCceEEEEeCC-CcEEEEeC-CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence            367999999985 89999986 8999999855 443222221      2334567899998   357888876632    


Q ss_pred             ----CeEEEEeCCCC-----ceEEEEc------CCCCCceeEEEeCCCCeEEEEecC------------CCceEEEeccC
Q psy8875         569 ----NTIELANFEGT-----MRKVLVR------SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIERAGMD  621 (734)
Q Consensus       569 ----~~I~~~~ldG~-----~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~~~ld  621 (734)
                          .+|.+..++..     ..++|+.      .....-.+|+++| .|+||++--.            ..++|.|++.|
T Consensus        78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d  156 (331)
T PF07995_consen   78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD  156 (331)
T ss_dssp             SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred             CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEeccc
Confidence                46887777544     2333332      2345567899998 5799999521            13689999999


Q ss_pred             CCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCc--------------e----
Q psy8875         622 GSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGN--------------R----  668 (734)
Q Consensus       622 G~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~--------------~----  668 (734)
                      |+.            ...++...+..|.+|++|+.+++||.+|.+..   .|.++. .|.+              .    
T Consensus       157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~  235 (331)
T PF07995_consen  157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGD  235 (331)
T ss_dssp             SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECT
T ss_pred             CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCcccc
Confidence            972            22356678999999999988899999996544   344433 2211              0    


Q ss_pred             --------EEEEcCCCCCCCCeEEEEE--------CCEEEEEeCCCCceEEEeccCCC
Q psy8875         669 --------RLVLYSPQTLSHPFSISTF--------EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       669 --------~~i~~~~~~~~~P~gl~v~--------~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                              ..++.- ..-..|.||+++        .+.++++++...+|+++....+.
T Consensus       236 ~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~  292 (331)
T PF07995_consen  236 APSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDG  292 (331)
T ss_dssp             GSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred             ccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCC
Confidence                    001100 112458899886        67899999999999999875453

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1520|consensus

Probab=98.74  E-value=2.5e-07  Score=96.33  Aligned_cols=177  Identities=15%  Similarity=0.175  Sum_probs=121.7

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCce-------EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSER-------TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR  586 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~-------~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~  586 (734)
                      .+.|+|+-...+.|.++........       .+.....=..|-|||++..++.||++|... -+++++..|...+.+..
T Consensus        75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYl-GL~~V~p~g~~a~~l~~  153 (376)
T KOG1520|consen   75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYL-GLLKVGPEGGLAELLAD  153 (376)
T ss_pred             CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecce-eeEEECCCCCcceeccc
Confidence            5567888776777766655211111       111111235799999999999999999964 47777888776555543


Q ss_pred             C----CCCCceeEEEeCCCCeEEEEecCC----------------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875         587 S----YLDEPRSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR  646 (734)
Q Consensus       587 ~----~l~~P~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~  646 (734)
                      .    .+.-.+++.||+ +|.|||||.+.                .+++.+.+..-...+ ++..++..||||++.+.+.
T Consensus       154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~-VLld~L~F~NGlaLS~d~s  231 (376)
T KOG1520|consen  154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTK-VLLDGLYFPNGLALSPDGS  231 (376)
T ss_pred             cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchh-hhhhcccccccccCCCCCC
Confidence            3    234557999999 99999999653                234444443333333 3346799999999999999


Q ss_pred             eEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEEC-CEEEEEe
Q psy8875         647 RLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTFE-DWLYWSD  695 (734)
Q Consensus       647 ~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~~-~~lywtd  695 (734)
                      .|.+++....+|.++-+.|...   .+++.  ...+.|.-|...+ |.+|++-
T Consensus       232 fvl~~Et~~~ri~rywi~g~k~gt~EvFa~--~LPG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  232 FVLVAETTTARIKRYWIKGPKAGTSEVFAE--GLPGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             EEEEEeeccceeeeeEecCCccCchhhHhh--cCCCCCcceeECCCCCEEEEE
Confidence            9999999999999999998866   66654  2456788888854 4444443

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.74  E-value=4.6e-09  Score=71.75  Aligned_cols=34  Identities=62%  Similarity=1.367  Sum_probs=31.8

Q ss_pred             cccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       135 C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      |.+.+|+|.+++||+..|+|||..||+|||||..
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence            5678999999999999999999999999999975

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.73  E-value=1.8e-06  Score=92.58  Aligned_cols=224  Identities=19%  Similarity=0.263  Sum_probs=135.8

Q ss_pred             eeeeeec-cceEEeecCCCceEEE-------ecCCcceEEEeeec---cCCeEEEEEeCC--------CcEEEEecCCCC
Q psy8875         476 SLLFARK-HDIRKISLDHHEMTAI-------VNSTKSATAIDFVF---RTGMIFWSDISE--------KKIYKAPIDEGS  536 (734)
Q Consensus       476 ~l~~~~~-~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~---~~~~lyw~d~~~--------~~I~~~~l~~g~  536 (734)
                      .+|++.+ ..|+++..++.....+       ........+|++++   .++.||++-...        .+|.|+.++.+.
T Consensus        14 ~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~   93 (331)
T PF07995_consen   14 RLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGD   93 (331)
T ss_dssp             CEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTS
T ss_pred             cEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCc
Confidence            3455443 5677777555542222       12345678999998   357888876532        468888887541


Q ss_pred             ----ceEEEEe------CCCCCccceeeeccCCcEEEEeC-------------CCCeEEEEeCCCCc------------e
Q psy8875         537 ----ERTVVIE------EDKTIADGLAVDWIYSHIYWTDA-------------HKNTIELANFEGTM------------R  581 (734)
Q Consensus       537 ----~~~~~~~------~~~~~p~glAvD~~~~~lY~td~-------------~~~~I~~~~ldG~~------------~  581 (734)
                          ..++++.      .......+|++++. ++||++-.             ..++|.+++.+|+.            .
T Consensus        94 ~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpD-G~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~  172 (331)
T PF07995_consen   94 GDLSSEEVLVTGLPDTSSGNHNGGGLAFGPD-GKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGAD  172 (331)
T ss_dssp             CEEEEEEEEEEEEES-CSSSS-EEEEEE-TT-SEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTST
T ss_pred             cccccceEEEEEeCCCCCCCCCCccccCCCC-CcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCce
Confidence                1233332      12344567999964 59999832             14789999999872            2


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCc---------------------------eEEEEEcC
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSH---------------------------RNMVIVSD  632 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~---------------------------~~~lv~~~  632 (734)
                      ..++..++.+|.++++||.+|.||.+|.+..  -.|.++. .|.+                           ..++....
T Consensus       173 ~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~-~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~  251 (331)
T PF07995_consen  173 SEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIE-PGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPP  251 (331)
T ss_dssp             TTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE--TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETT
T ss_pred             EEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEec-cCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecC
Confidence            2345578999999999999999999997642  2444432 1111                           01111122


Q ss_pred             CCCceeEEEe------cCCCeEEEEeCCCCeEEEEecCCCce----EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCce
Q psy8875         633 IKWPNGLTLD------LVQRRLYWVDAKLNEISSCDYNGGNR----RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAI  701 (734)
Q Consensus       633 l~~P~glavD------~~~~~LYw~D~~~~~I~~~~~dG~~~----~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v  701 (734)
                      -..|.||++-      ...+.+++++....+|+++.++....    ..++  ......|.+|++ ..|.||+++-.+++|
T Consensus       252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~r~~~v~~~pDG~Lyv~~d~~G~i  329 (331)
T PF07995_consen  252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL--GGFGGRPRDVAQGPDGALYVSDDSDGKI  329 (331)
T ss_dssp             T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC--TTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred             ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc--ccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence            2457888874      13578999999999999999874422    2222  122337889999 568999999899999


Q ss_pred             EE
Q psy8875         702 YK  703 (734)
Q Consensus       702 ~~  703 (734)
                      +|
T Consensus       330 yR  331 (331)
T PF07995_consen  330 YR  331 (331)
T ss_dssp             EE
T ss_pred             eC
Confidence            87

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=98.70  E-value=5.8e-09  Score=71.03  Aligned_cols=36  Identities=50%  Similarity=1.207  Sum_probs=30.8

Q ss_pred             cccCCCCCcCccccCCCcceeecCCCcEecCCCCcc
Q psy8875         392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      |..++++|+|+|++++++|+|+|++||.|.+|+++|
T Consensus         1 C~~~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSVNNGGCSHICVNTPGSYRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTTGGGGSSSEEEEETTSEEEE-STTEEE-TTSSSE
T ss_pred             CCCCCCCcCCCCccCCCceEeECCCCCEECcCCCCC
Confidence            455678999999999999999999999999999987

...

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.66  E-value=1.7e-08  Score=68.01  Aligned_cols=32  Identities=56%  Similarity=1.373  Sum_probs=30.0

Q ss_pred             CCCCCceecCCCceecCcCccCCCCCCCCCCcc
Q psy8875          54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE   86 (734)
Q Consensus        54 C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de   86 (734)
                      |+ ..+|+|.+|.||+..|+|||+.||+||+||
T Consensus         2 C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CP-PGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CC-CCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            66 569999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1520|consensus

Probab=98.62  E-value=1.4e-06  Score=90.76  Aligned_cols=142  Identities=20%  Similarity=0.308  Sum_probs=105.2

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCccceeeeccCCcEEEEeCCC----------
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIADGLAVDWIYSHIYWTDAHK----------  568 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p~glAvD~~~~~lY~td~~~----------  568 (734)
                      .+|.||+++..++.||++|...+ ++.+.+.++. .+.+...    .+.-..+|.||. ++.|||||+..          
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~-a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a  191 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGL-AELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA  191 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEECCCCCc-ceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEe
Confidence            68999999999999999997655 7888887443 3333222    233456899997 99999999863          


Q ss_pred             -------CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce---EEEEEcCCCCcee
Q psy8875         569 -------NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR---NMVIVSDIKWPNG  638 (734)
Q Consensus       569 -------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~---~~lv~~~l~~P~g  638 (734)
                             +|+.+.+...+..++|+ .+|.-|+|||+.|...++.+++.. ..+|.|..+.|...   ++++...-..|.-
T Consensus       192 ~l~g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa~~LPG~PDN  269 (376)
T KOG1520|consen  192 ALEGDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFAEGLPGYPDN  269 (376)
T ss_pred             eecCCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHhhcCCCCCcc
Confidence                   34555555444444444 779999999999999999999965 47899999988776   6666656678999


Q ss_pred             EEEecCCCeEEEE
Q psy8875         639 LTLDLVQRRLYWV  651 (734)
Q Consensus       639 lavD~~~~~LYw~  651 (734)
                      |..+ .+|. ||+
T Consensus       270 IR~~-~~G~-fWV  280 (376)
T KOG1520|consen  270 IRRD-STGH-FWV  280 (376)
T ss_pred             eeEC-CCCC-EEE
Confidence            9998 4444 344

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.59  E-value=7.5e-06  Score=80.93  Aligned_cols=204  Identities=11%  Similarity=0.079  Sum_probs=137.2

Q ss_pred             ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875         499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG  578 (734)
Q Consensus       499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG  578 (734)
                      +.....|..|+.++ .+.+++++...+.|-+.+...|...++-+. .-..|.+|.+++ .+..+++|.+. .|.|++...
T Consensus        58 vp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg-~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt  133 (353)
T COG4257          58 VPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLG-SGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKT  133 (353)
T ss_pred             cCCCCCccccccCC-CCceEEecCccccceecCCCCCceEEEecC-CCCCCceEEECC-CCCeeEecCcc-eeEEecCcc
Confidence            34556777787775 688999999999999999887776666665 446899999995 57889999876 888887643


Q ss_pred             CceEEE-E--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875         579 TMRKVL-V--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       579 ~~~~~l-~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ...+.. +  +..-.+-...++|+ .|.|+||...  +.-.|.+..-...++.-...-..|+||.+. .++.||++....
T Consensus       134 ~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q~--G~yGrLdPa~~~i~vfpaPqG~gpyGi~at-pdGsvwyaslag  209 (353)
T COG4257         134 LEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQI--GAYGRLDPARNVISVFPAPQGGGPYGICAT-PDGSVWYASLAG  209 (353)
T ss_pred             cceEEeecccccCCCcccceeeCC-CccEEEeecc--ccceecCcccCceeeeccCCCCCCcceEEC-CCCcEEEEeccc
Confidence            333322 1  11223445678886 6889888732  222233333222333333344679999996 688999999888


Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCC
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      +.|-+++.-....+++..-...-..-..|-. .-++++.|+|++++++++++.+-.
T Consensus       210 naiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         210 NAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             cceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence            9999999544455444432111122233444 458999999999999999886554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.58  E-value=1.4e-05  Score=80.72  Aligned_cols=219  Identities=16%  Similarity=0.177  Sum_probs=140.7

Q ss_pred             ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC----CCce--EEEEeC-----CCCCccceeeeccCC--------
Q psy8875         499 VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE----GSER--TVVIEE-----DKTIADGLAVDWIYS--------  559 (734)
Q Consensus       499 ~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~----g~~~--~~~~~~-----~~~~p~glAvD~~~~--------  559 (734)
                      -+++.++.+|++.+ .+.+|++|..++.....+.+.    +...  .+.+..     ....|.|+.+.-...        
T Consensus        19 Dp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~   97 (336)
T TIGR03118        19 DPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGI   97 (336)
T ss_pred             CccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCc
Confidence            35788999999987 557777777776655554430    1111  222221     234788888873322        


Q ss_pred             -----cEEEEeCCCCeEEEEeC--CCC---ceEEEEcC--CCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCce
Q psy8875         560 -----HIYWTDAHKNTIELANF--EGT---MRKVLVRS--YLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHR  625 (734)
Q Consensus       560 -----~lY~td~~~~~I~~~~l--dG~---~~~~l~~~--~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~  625 (734)
                           .||.++.  ++|.-.+.  +-.   ...+++..  ...--+||||-..  ..+||-+|.. +++|.+.+  ++-+
T Consensus        98 ~~~a~Fif~tEd--GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVFd--~~f~  172 (336)
T TIGR03118        98 TGPSRFLFVTED--GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVFK--GSFR  172 (336)
T ss_pred             ccceeEEEEeCC--ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEec--Cccc
Confidence                 2444443  55555443  212   11233322  2344578888744  5799999985 68898864  4444


Q ss_pred             EEEEEcC--------CCCceeEEEecCCCeEEEEe-------------CCCCeEEEEecCCCceEEEEcCCCCCCCCeEE
Q psy8875         626 NMVIVSD--------IKWPNGLTLDLVQRRLYWVD-------------AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSI  684 (734)
Q Consensus       626 ~~lv~~~--------l~~P~glavD~~~~~LYw~D-------------~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl  684 (734)
                      ++.+...        -.-|.+|..  .+++||++=             .+.+.|..++++|.-.+.+.+. ..|..|.||
T Consensus       173 ~~~~~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~LNaPWG~  249 (336)
T TIGR03118       173 PPPLPGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GRLNAPWGL  249 (336)
T ss_pred             cccCCCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-CcccCCcee
Confidence            3322211        134666664  589999983             2345899999999988887654 679999999


Q ss_pred             EE-------ECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         685 ST-------FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       685 ~v-------~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      ++       +.+.|.+-+.+.++|..++..+|+.+-.|...  -.+|+.|+
T Consensus       250 a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~--~G~pi~i~  298 (336)
T TIGR03118       250 AIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP--DNHPVKVD  298 (336)
T ss_pred             eeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC--CCCeEEec
Confidence            98       46899999999999999999899887777643  34555554

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.58  E-value=8.7e-06  Score=80.49  Aligned_cols=231  Identities=13%  Similarity=0.124  Sum_probs=152.3

Q ss_pred             eeeeee--ccceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCcc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIAD  550 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~  550 (734)
                      .+.|+.  .+.|-+++....+...+ +....+|.+|.+.+ .+..+++|... .|.|++.......+.-+.  ..-.+.+
T Consensus        74 ~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nle  151 (353)
T COG4257          74 AVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLE  151 (353)
T ss_pred             ceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCccc
Confidence            344543  34567777665555544 34667899999986 67888898766 899988764444433332  1223445


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      ...+| ..++|+||... +.--+.+......++.-......|.||.+.| +|.||++... ...|.+++.-....+++..
T Consensus       152 t~vfD-~~G~lWFt~q~-G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyasla-gnaiaridp~~~~aev~p~  227 (353)
T COG4257         152 TAVFD-PWGNLWFTGQI-GAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLA-GNAIARIDPFAGHAEVVPQ  227 (353)
T ss_pred             ceeeC-CCccEEEeecc-ccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEecc-ccceEEcccccCCcceecC
Confidence            66788 56889999763 3333555554555555556678999999997 6889988754 3578787764334444432


Q ss_pred             -cC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEecc
Q psy8875         631 -SD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       631 -~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~  707 (734)
                       +. -.--+.|..| ..++++.+++.++++.+++..-+.=.... -+..-.+|.+|-| ..++++.+|+..+.|.|+++.
T Consensus       228 P~~~~~gsRriwsd-pig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~sea~agai~rfdpe  305 (353)
T COG4257         228 PNALKAGSRRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPE  305 (353)
T ss_pred             CCcccccccccccC-ccCcEEEeccCCceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeeccccCceeecCcc
Confidence             11 1223445666 57789999999999999997655422221 1344578999999 468888889999999999987


Q ss_pred             CCCceEEE
Q psy8875         708 TGDNLTAI  715 (734)
Q Consensus       708 ~G~~~~~l  715 (734)
                      +-+ .+++
T Consensus       306 ta~-ftv~  312 (353)
T COG4257         306 TAR-FTVL  312 (353)
T ss_pred             cce-EEEe
Confidence            554 3444

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.55  E-value=7.6e-08  Score=90.02  Aligned_cols=69  Identities=36%  Similarity=0.689  Sum_probs=59.0

Q ss_pred             CCceecCCC-ce-ecCcCccCCCCCCCCCCcccccccCcccCCceeccCCC--CeeeCCCCCCCCCCC---CCCCCCc
Q psy8875          57 STMFRCTGG-MC-IPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP--GECVPLTWMCDDNPD---CSDGSDE  127 (734)
Q Consensus        57 ~~~f~C~~g-~C-i~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~--~~Ci~~~~~Cdg~~d---C~dg~de  127 (734)
                      .+.|+|.+| .= |+.+++.|++.||+|||||..  +..|+...|.|.|..  ..-||.++|-||+.|   |=|||||
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG--TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE  110 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG--TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE  110 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCccc--cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence            467999987 34 899999999999999999973  235777899999872  267999999999999   9999999

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.54  E-value=4.6e-08  Score=65.93  Aligned_cols=32  Identities=63%  Similarity=1.312  Sum_probs=30.0

Q ss_pred             cccccCcCCCCceEeCccccCCCCCCCCCCCC
Q psy8875         135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE  166 (734)
Q Consensus       135 C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde  166 (734)
                      |...+|+|.++.||+..++|||..||+||+||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            56679999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.52  E-value=1.2e-05  Score=88.22  Aligned_cols=166  Identities=16%  Similarity=0.229  Sum_probs=112.9

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-----EE-eCCCCCccceeeecc------CCcE
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-----VI-EEDKTIADGLAVDWI------YSHI  561 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-----~~-~~~~~~p~glAvD~~------~~~l  561 (734)
                      ..+.++.++..|.+|++.+ .++||+++...++|+++...++....+     ++ ..+...+.|||+++.      ++.|
T Consensus        21 ~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~l   99 (454)
T TIGR03606        21 DKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEE
Confidence            3456778899999999987 578999987679999987653332211     11 113456789999854      4678


Q ss_pred             EEEeC---------CCCeEEEEeCCCC-----ceEEEEcC----CCCCceeEEEeCCCCeEEEEecC-------------
Q psy8875         562 YWTDA---------HKNTIELANFEGT-----MRKVLVRS----YLDEPRSLALNPIDGWMYWSDWG-------------  610 (734)
Q Consensus       562 Y~td~---------~~~~I~~~~ldG~-----~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~-------------  610 (734)
                      |++-.         ...+|.|+.++..     ..++|+..    ....-..|+++| .|+||++--.             
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~  178 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPN  178 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcc
Confidence            98842         1457888877532     23344422    123456899998 5789997411             


Q ss_pred             ------------------CCceEEEeccCCCc----------eEEEEEcCCCCceeEEEecCCCeEEEEeCCC---CeEE
Q psy8875         611 ------------------QNAKIERAGMDGSH----------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL---NEIS  659 (734)
Q Consensus       611 ------------------~~~~I~~~~ldG~~----------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~---~~I~  659 (734)
                                        ..++|.|++.||+.          +..|....+..|.||++|+ +++||.+|.+.   ..|.
T Consensus       179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~~DEiN  257 (454)
T TIGR03606       179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNSDDELN  257 (454)
T ss_pred             hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCCCcEEE
Confidence                              12389999999973          3346677889999999997 89999999654   3444


Q ss_pred             EEe
Q psy8875         660 SCD  662 (734)
Q Consensus       660 ~~~  662 (734)
                      ++.
T Consensus       258 ~I~  260 (454)
T TIGR03606       258 IIV  260 (454)
T ss_pred             Eec
Confidence            443

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=0.00014  Score=80.55  Aligned_cols=232  Identities=9%  Similarity=-0.001  Sum_probs=144.6

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCe-EEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGM-IFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~-lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      .+|+.++.+|.+...+..+. ......|.+..++ +|++...  ...|+.+++.+|.. +.+.. ........++.+.++
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEec-CCCcEEeeEECCCCC
Confidence            47888888998877666653 5567788887775 7766554  46799999985543 33332 111122344555677


Q ss_pred             cEEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         560 HIYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       560 ~lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      +|+++...  ...|+++++++...+.|..... .-....+.|...+|||+.. +....|++++++|...+.+....... 
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~-  323 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN-  323 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEEcccCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC-
Confidence            78777543  4689999998877665543221 1223457777777877753 34469999999987775554433222 


Q ss_pred             eeEEEecCCCeEEEEeCCC--------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875         637 NGLTLDLVQRRLYWVDAKL--------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK  706 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~~--------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~  706 (734)
                        .++++.+++|.++....        ..|+.+++++...+.|... .....| ..+..+..|+++...  ...|..++.
T Consensus       324 --~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p-~~SPDG~~I~f~~~~~~~~~L~~~~l  399 (419)
T PRK04043        324 --SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFP-RFSSDGGSIMFIKYLGNQSALGIIRL  399 (419)
T ss_pred             --ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCe-EECCCCCEEEEEEccCCcEEEEEEec
Confidence              37888888888875432        4899999998877766543 222222 344467778777543  334666654


Q ss_pred             cCCCceEEEec-ccccCCC
Q psy8875         707 FTGDNLTAITG-VHQTHEP  724 (734)
Q Consensus       707 ~~G~~~~~l~~-~~~l~~P  724 (734)
                       +|.....|.. ...++.|
T Consensus       400 -~g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        400 -NYNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             -CCCeeEEeecCCCccCCC
Confidence             6665555543 2234444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.48  E-value=7.7e-05  Score=83.54  Aligned_cols=227  Identities=10%  Similarity=0.059  Sum_probs=144.7

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.+|.+...+...........|.+..++|+|+....  ..|+.+++.++.. +.+.. ........++.+.++.|
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~-~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTS-FPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecC-CCCCcCCeeECCCCCEE
Confidence            45556777777766665555556788998888898875443  4699999885543 33322 11223456777778888


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...  ...|++.++++...+.+.. ........++.|...+|+++.. +....|+++++++...+.+... ..+..+
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~-~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~  354 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALTRITR-HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLG  354 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC-CCCCcC
Confidence            886443  3469999998776655543 2234456778887778877653 3346899999986655444322 223345


Q ss_pred             EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC--ceEEEeccCCCceEE
Q psy8875         639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK--AIYKANKFTGDNLTA  714 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~--~v~~~~~~~G~~~~~  714 (734)
                      .++.+.++.||++....  ..|+.+++++...+.+... .....| +.+..+..|+++....+  .|+.++. +|+..+.
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~  431 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR  431 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            68888888999886433  3788899988776655432 112234 34556778888665433  3666654 7777776


Q ss_pred             Eec
Q psy8875         715 ITG  717 (734)
Q Consensus       715 l~~  717 (734)
                      +..
T Consensus       432 l~~  434 (448)
T PRK04792        432 LPA  434 (448)
T ss_pred             CcC
Confidence            643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00013  Score=81.73  Aligned_cols=226  Identities=10%  Similarity=0.084  Sum_probs=144.3

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.++.+...+..........+|.+..++|+++...  ...|+..++.+|.. +.+.. ......+.++.+.+++|
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~-~~g~~~~~~~SPDG~~l  260 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGN-FPGMTFAPRFSPDGRKV  260 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeec-CCCcccCcEECCCCCEE
Confidence            6777778888877776666667888999888888887543  45799999885543 33322 22233466777778888


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++-..  ...|+++++++...+.|... .......++.|...+|+++. ......|++.+++|...+.+.... ..-..
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~-~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~  338 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDS-PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYST  338 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCC-CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccC
Confidence            776543  45699999988766555432 22345577788777776654 333468999999987666554332 12234


Q ss_pred             EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-----CceEEEeccCCCc
Q psy8875         639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-----KAIYKANKFTGDN  711 (734)
Q Consensus       639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-----~~v~~~~~~~G~~  711 (734)
                      +++.+.+++|+++...  ...|..++++|+..+.+... .....| ..+-.+..||++-...     ..|+.++. +|..
T Consensus       339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~-~~~~~p-~~spDG~~i~~~~~~~~~~~~~~L~~~dl-~g~~  415 (435)
T PRK05137        339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG-FLVEGP-TWAPNGRVIMFFRQTPGSGGAPKLYTVDL-TGRN  415 (435)
T ss_pred             eEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC-CCCCCC-eECCCCCEEEEEEccCCCCCcceEEEEEC-CCCc
Confidence            6787888899887643  34789999988776655432 111222 2333567787764322     36888876 4544


Q ss_pred             eEEEe
Q psy8875         712 LTAIT  716 (734)
Q Consensus       712 ~~~l~  716 (734)
                      .+.|.
T Consensus       416 ~~~l~  420 (435)
T PRK05137        416 EREVP  420 (435)
T ss_pred             eEEcc
Confidence            55554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.46  E-value=7.9e-05  Score=83.27  Aligned_cols=226  Identities=11%  Similarity=0.124  Sum_probs=142.6

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.++.+...+..........+|.+..++|+++....  ..|++.++.++.. +.+.. .......+++.+.+++|
T Consensus       185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-~~l~~-~~g~~~~~~~SpDG~~l  262 (433)
T PRK04922        185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-ELVAS-FRGINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-EEecc-CCCCccCceECCCCCEE
Confidence            46667777777776665545567788988888888876443  4699999985543 33322 11223456777778888


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++-..  ...|++.++++...+.+.. ........++.|...+|+++. ......|++.++++...+.+.... .....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g-~~~~~  340 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQG-NYNAR  340 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCC-CCccC
Confidence            876443  4479999998776555442 222335678888777777664 333467999998776554443222 33446


Q ss_pred             EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC--CCCceEEEeccCCCceEE
Q psy8875         639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW--QQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~--~~~~v~~~~~~~G~~~~~  714 (734)
                      +++.+.++.|+++....  ..|+.+++++...+.+... .....| ..+..+..|+++..  +...|+.++. +|...+.
T Consensus       341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~-~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~  417 (433)
T PRK04922        341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPG-SLDESP-SFAPNGSMVLYATREGGRGVLAAVST-DGRVRQR  417 (433)
T ss_pred             EEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            78888889999886432  3689999887776654332 122223 23335667777654  3446777765 5655555


Q ss_pred             Ee
Q psy8875         715 IT  716 (734)
Q Consensus       715 l~  716 (734)
                      |.
T Consensus       418 l~  419 (433)
T PRK04922        418 LV  419 (433)
T ss_pred             cc
Confidence            54

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.44  E-value=1.8e-05  Score=80.29  Aligned_cols=181  Identities=12%  Similarity=0.078  Sum_probs=109.3

Q ss_pred             CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--C
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--G  622 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G  622 (734)
                      -...+.||++++.++.||.+......|...+++|...+.+--.+...|.||++- .++.+..++ .....|.....+  +
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~-Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSE-ERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEE-TTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEE-cCCCcEEEEEEeccc
Confidence            345689999999999999998889999999999998877766778899999995 345555555 334677766663  2


Q ss_pred             Cc--eEEE--EEcCC-----CCceeEEEecCCCeEEEEeCCC-CeEEEEec--CCCceEEEEc-----CCCCCCCCeEEE
Q psy8875         623 SH--RNMV--IVSDI-----KWPNGLTLDLVQRRLYWVDAKL-NEISSCDY--NGGNRRLVLY-----SPQTLSHPFSIS  685 (734)
Q Consensus       623 ~~--~~~l--v~~~l-----~~P~glavD~~~~~LYw~D~~~-~~I~~~~~--dG~~~~~i~~-----~~~~~~~P~gl~  685 (734)
                      ..  +..+  +.-.+     ....|||+|+.+++||++.-+. ..|+.++.  .+....+...     ....+..|.+|+
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence            22  1111  11111     1247999999999999995433 36777775  2333322221     123456789999


Q ss_pred             EE--CCEEEEEeCCCCceEEEeccCCCceEEEeccc-------ccCCCccCC
Q psy8875         686 TF--EDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-------QTHEPLNSP  728 (734)
Q Consensus       686 v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-------~l~~P~~i~  728 (734)
                      +.  .++||+....+..|..++ .+|+.+..+....       .+++|=+|+
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa  228 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIA  228 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEE
Confidence            95  579999999999999998 6888777665332       356676664

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.42  E-value=3.5e-05  Score=77.49  Aligned_cols=200  Identities=14%  Similarity=0.160  Sum_probs=136.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEE-eCCCCeEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWT-DAHKNTIELANFEGT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~t-d~~~~~I~~~~ldG~  579 (734)
                      .....+|.|++.+++||-+--....|..+++. |.. +++-+ .++..|++|++  ++++.|+. |....++++..++-.
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL-~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPL-TGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecc-cccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCC
Confidence            34577899999999999887667789999888 444 44444 47889999886  56666664 555777877776544


Q ss_pred             ceEEEEc----------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc----C----CCCceeEEE
Q psy8875         580 MRKVLVR----------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS----D----IKWPNGLTL  641 (734)
Q Consensus       580 ~~~~l~~----------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~----~----l~~P~glav  641 (734)
                      .....+.          +.-..-.|+|-||.+++||++-..+.-.|+...+.-....+-+..    .    +.-..||.+
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            2222111          112345699999999999999866666788777543222211111    0    234568999


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC------CCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------PQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~  706 (734)
                      |..++.|++-....+.|..++.+|.-+..+.-.      ...+++|-||+. .+|.||++.-- +..+++.+
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEP-nlfy~F~~  311 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEP-NLFYRFTP  311 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecC-Ccceeccc
Confidence            999999999988889999999999865544221      134678899999 56888887543 44555543

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.38  E-value=3.3e-07  Score=85.76  Aligned_cols=76  Identities=38%  Similarity=0.722  Sum_probs=62.2

Q ss_pred             CCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCCC----ceEeCccccCCCCC---CCCCCCCCC
Q psy8875          96 QEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNN----RCIPNHWQCDGEFD---CSDKSDEDP  168 (734)
Q Consensus        96 ~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~g----~Ci~~~~~Cdg~~d---C~dgsde~~  168 (734)
                      ...|+|-+++..=|+...+.|+..||+|||||..  ...|+...|.|.|.    .-||.+++=||..|   |=|||||..
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG--TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~  112 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG--TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG  112 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCccc--cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence            3569999875444999999999999999999973  12466678999874    78999999999999   999999965


Q ss_pred             CCccC
Q psy8875         169 EMCNG  173 (734)
Q Consensus       169 ~~C~~  173 (734)
                      ..|++
T Consensus       113 ~~C~N  117 (176)
T PF12999_consen  113 GKCPN  117 (176)
T ss_pred             CCCcc
Confidence            44443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.36  E-value=0.00033  Score=78.07  Aligned_cols=227  Identities=9%  Similarity=0.072  Sum_probs=145.5

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.+|.+...+..........+|.+...+|.|+...  ...|+..++.+|..+ .+.. .......+++.+.++.|
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~-~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS-FPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccC-CCCCcCCeEECCCCCEE
Confidence            5788888888877776655567788999988888776543  346888888855433 3322 11233467888888889


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEE-ecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWS-DWGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwt-d~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...  ...|+++++++...+.+... .......++.|...+|+++ +.+....|++.++++...+.+.. .......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~  335 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDG-RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQD  335 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCC-CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccC
Confidence            987543  34699999987766555433 2345677888877777555 43334689999998876555432 2223345


Q ss_pred             EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-Cc-eEEEeccCCCceEE
Q psy8875         639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-KA-IYKANKFTGDNLTA  714 (734)
Q Consensus       639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-~~-v~~~~~~~G~~~~~  714 (734)
                      +++.+.+++|+++...  ...|+.+++++...+.+... .....| .++-++..|+++.... .. |+.++ .+|+..+.
T Consensus       336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p-~~SpDG~~i~~~s~~~~~~~l~~~~-~~G~~~~~  412 (429)
T PRK03629        336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETP-SIAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKAR  412 (429)
T ss_pred             EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCc-eECCCCCEEEEEEcCCCceEEEEEE-CCCCCeEE
Confidence            7788778888887543  34688899888776655432 111222 3444667777766533 23 44444 47777666


Q ss_pred             Eec
Q psy8875         715 ITG  717 (734)
Q Consensus       715 l~~  717 (734)
                      |..
T Consensus       413 l~~  415 (429)
T PRK03629        413 LPA  415 (429)
T ss_pred             Ccc
Confidence            653

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.36  E-value=9.9e-07  Score=63.61  Aligned_cols=42  Identities=36%  Similarity=0.742  Sum_probs=38.0

Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR  668 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~  668 (734)
                      +++...+..|+|||+|+.+++|||+|+..+.|++++++|+++
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~   43 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR   43 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence            456678999999999999999999999999999999999763

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.33  E-value=0.00037  Score=77.43  Aligned_cols=227  Identities=11%  Similarity=0.105  Sum_probs=143.0

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.++.....+..........+|.+..++|+|+....  ..|+..++.++.. ..+.. .......+++.+.++.|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-~~~~~-~~~~~~~~~~spDg~~l  248 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-EKVAS-FPGMNGAPAFSPDGSKL  248 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEeec-CCCCccceEECCCCCEE
Confidence            47777777777777765444566778998889999886543  5688888875433 22222 22234457777777788


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      |++...  ...|++.++++...+.+... .......++.|...+|+|+. .+....|++.++++...+.+.. .......
T Consensus       249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~  326 (417)
T TIGR02800       249 AVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNAS  326 (417)
T ss_pred             EEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccC
Confidence            887543  34699999987665555422 12233456777667787764 3334689999998776554432 2334556


Q ss_pred             EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC-ceEEEeccCCCceEEE
Q psy8875         639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK-AIYKANKFTGDNLTAI  715 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~-~v~~~~~~~G~~~~~l  715 (734)
                      +++.+.+++|+++....  .+|+.+++++...+.+... .....| .++..+++|+++....+ .++.+...+|+....+
T Consensus       327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            78888888899887543  4789999888666555432 222223 34446778888765432 3444555667665555


Q ss_pred             e
Q psy8875         716 T  716 (734)
Q Consensus       716 ~  716 (734)
                      .
T Consensus       405 ~  405 (417)
T TIGR02800       405 P  405 (417)
T ss_pred             C
Confidence            3

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.33  E-value=0.00035  Score=78.02  Aligned_cols=226  Identities=12%  Similarity=0.137  Sum_probs=141.6

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.++.+...+...........|.+..++|+++....  ..|++.++++|..+ .+.. ........++.+.+++|
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~-~~g~~~~~~~SpDG~~l  257 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITN-FEGLNGAPAWSPDGSKL  257 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccC-CCCCcCCeEECCCCCEE
Confidence            36666777777766665555567788998888888765443  46999999855433 3221 11223356777777888


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++-..  ...|++.++++...+.+.. ........++.|...+||++. ......|++.++++...+.+.... .....
T Consensus       258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~  335 (430)
T PRK00178        258 AFVLSKDGNPEIYVMDLASRQLSRVTN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNAR  335 (430)
T ss_pred             EEEEccCCCceEEEEECCCCCeEEccc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCccc
Confidence            876543  3479999998876655542 222344567777777777764 333468999998776655443222 22234


Q ss_pred             EEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC--CceEEEeccCCCceEE
Q psy8875         639 LTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ--KAIYKANKFTGDNLTA  714 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~--~~v~~~~~~~G~~~~~  714 (734)
                      .++.+.++.|+++....  ..|+.+++.+...+.+... .....| .++..+..|+++....  ..|+.++. +|.....
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~  412 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-SLDESP-SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLP  412 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-CCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            57778889999886433  3688999888776665432 122233 3444677888876543  45666654 5665555


Q ss_pred             Ee
Q psy8875         715 IT  716 (734)
Q Consensus       715 l~  716 (734)
                      +.
T Consensus       413 l~  414 (430)
T PRK00178        413 LP  414 (430)
T ss_pred             Cc
Confidence            54

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.32  E-value=0.00019  Score=77.86  Aligned_cols=245  Identities=11%  Similarity=0.033  Sum_probs=131.4

Q ss_pred             eeeeee-ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC----CCc-
Q psy8875         476 SLLFAR-KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK----TIA-  549 (734)
Q Consensus       476 ~l~~~~-~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~----~~p-  549 (734)
                      ++|+++ +..|..+++.......-+.....+.++++.+..+.||.++...+.+..++.........+-....    ..+ 
T Consensus        50 ~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~R  129 (369)
T PF02239_consen   50 YLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESR  129 (369)
T ss_dssp             EEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---
T ss_pred             EEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCC
Confidence            455555 35688888887776655666678999999988999999999999999888764333333221111    112 


Q ss_pred             -cceeeeccCCcEEEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875         550 -DGLAVDWIYSHIYWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM  627 (734)
Q Consensus       550 -~glAvD~~~~~lY~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~  627 (734)
                       .+|.-.+.....+++-...++|.+++.... ...+-.......|.+..+||..++++.+..+ ..+|..+++.......
T Consensus       130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-sn~i~viD~~~~k~v~  208 (369)
T PF02239_consen  130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-SNKIAVIDTKTGKLVA  208 (369)
T ss_dssp             EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-GTEEEEEETTTTEEEE
T ss_pred             ceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-cceeEEEeeccceEEE
Confidence             244333333334445566799999987543 2222222345678999999987777776432 2344444433222111


Q ss_pred             EEE------------------------------------cC------------------CCCceeEEEecCCCeEEEE--
Q psy8875         628 VIV------------------------------------SD------------------IKWPNGLTLDLVQRRLYWV--  651 (734)
Q Consensus       628 lv~------------------------------------~~------------------l~~P~glavD~~~~~LYw~--  651 (734)
                      ++.                                    ..                  ...|..+...+.+.+||+.  
T Consensus       209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~  288 (369)
T PF02239_consen  209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF  288 (369)
T ss_dssp             EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T
T ss_pred             EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc
Confidence            111                                    00                  1123334444444444443  


Q ss_pred             -eCCCCeEEEEecCCCceEEEEcCC-CCCCCCeEEEE--ECCEEEEEeCCCC-ceEEEeccCCCceEEEecccccCCCcc
Q psy8875         652 -DAKLNEISSCDYNGGNRRLVLYSP-QTLSHPFSIST--FEDWLYWSDWQQK-AIYKANKFTGDNLTAITGVHQTHEPLN  726 (734)
Q Consensus       652 -D~~~~~I~~~~~dG~~~~~i~~~~-~~~~~P~gl~v--~~~~lywtd~~~~-~v~~~~~~~G~~~~~l~~~~~l~~P~~  726 (734)
                       ....+.|..++...-  +++..-. .....+..+.+  .+.+||++.|..+ +|..++..+.+..+.|.    +..|.+
T Consensus       289 ~~~~~~~v~viD~~tl--~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~----~~tP~G  362 (369)
T PF02239_consen  289 LNPDADTVQVIDKKTL--KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP----VPTPTG  362 (369)
T ss_dssp             T-SSHT-EEEEECCGT--EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE------SEEE
T ss_pred             CCCCCceEEEEECcCc--ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE----eeCCCe
Confidence             244556777665543  2222100 00112555666  5789999999988 99999998888888887    556655


Q ss_pred             C
Q psy8875         727 S  727 (734)
Q Consensus       727 i  727 (734)
                      +
T Consensus       363 ~  363 (369)
T PF02239_consen  363 K  363 (369)
T ss_dssp             E
T ss_pred             E
Confidence            4

...

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.28  E-value=0.00011  Score=80.65  Aligned_cols=154  Identities=16%  Similarity=0.127  Sum_probs=103.8

Q ss_pred             EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE------c-CCCCCceeEEEeCC------CCeEEEEe
Q psy8875         542 IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV------R-SYLDEPRSLALNPI------DGWMYWSD  608 (734)
Q Consensus       542 ~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~------~-~~l~~P~~iavD~~------~g~LYwtd  608 (734)
                      +..++..|.+|++.+ .++||+++...++|.+++..+...+.+.      . .....+.+||++|.      +++||++-
T Consensus        25 va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy  103 (454)
T TIGR03606        25 LLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY  103 (454)
T ss_pred             EECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence            445899999999986 4689999987789999876554333221      1 13566789999965      46888884


Q ss_pred             cC--------CCceEEEeccCCC-----ceEEEEEcC----CCCceeEEEecCCCeEEEEeCC-----------------
Q psy8875         609 WG--------QNAKIERAGMDGS-----HRNMVIVSD----IKWPNGLTLDLVQRRLYWVDAK-----------------  654 (734)
Q Consensus       609 ~~--------~~~~I~~~~ldG~-----~~~~lv~~~----l~~P~glavD~~~~~LYw~D~~-----------------  654 (734)
                      ..        ...+|.|..++..     ..++|+...    .+.-..|++++ .++||++-..                 
T Consensus       104 t~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ~  182 (454)
T TIGR03606       104 TYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQH  182 (454)
T ss_pred             eccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhcc
Confidence            21        1358988887632     234444321    23445788885 5689997321                 


Q ss_pred             ---------------CCeEEEEecCCCc----------eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC
Q psy8875         655 ---------------LNEISSCDYNGGN----------RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK  699 (734)
Q Consensus       655 ---------------~~~I~~~~~dG~~----------~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~  699 (734)
                                     .++|.|++.||+-          +..|.+  -.+.+|++|++. .+.||.+|.+..
T Consensus       183 ~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA--~G~RNp~Gla~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       183 TPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFT--YGHRNPQGLAFTPDGTLYASEQGPN  251 (454)
T ss_pred             ccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEE--EeccccceeEECCCCCEEEEecCCC
Confidence                           2379999999872          223333  236889999994 789999997753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.26  E-value=6.2e-05  Score=78.70  Aligned_cols=153  Identities=16%  Similarity=0.254  Sum_probs=96.4

Q ss_pred             CcceEEEeeeccC-----CeEEEEEeCCCcEEEEecCCCCceEEEEeCC------------------CCCccceeeecc-
Q psy8875         502 TKSATAIDFVFRT-----GMIFWSDISEKKIYKAPIDEGSERTVVIEED------------------KTIADGLAVDWI-  557 (734)
Q Consensus       502 ~~~~~~i~~d~~~-----~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~------------------~~~p~glAvD~~-  557 (734)
                      ......|.+|...     +.+|++|.....|..+++..+....++....                  .....|||+.+. 
T Consensus        60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~  139 (287)
T PF03022_consen   60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS  139 (287)
T ss_dssp             CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred             ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence            3455666777643     5899999988888888887654433332211                  112446777663 


Q ss_pred             --CCcEEEEeCCCCeEEEEeCC----CC---------ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         558 --YSHIYWTDAHKNTIELANFE----GT---------MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       558 --~~~lY~td~~~~~I~~~~ld----G~---------~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                        ++.|||.-....+++++...    ..         ..+.+. .......|+++|+ +|.||+++.. ..+|.+.+.++
T Consensus       140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~~  216 (287)
T PF03022_consen  140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPDG  216 (287)
T ss_dssp             TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEET-TTEEEEEECC-CTEEEEEETTT
T ss_pred             CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECC-CCcEEEecCC-CCeEEEEeCCC
Confidence              35799999887888887541    11         112222 2224568999998 8999999975 58999999998


Q ss_pred             ----CceEEEEE-cC-CCCceeEEEec-CCCeEEEEeCCCCe
Q psy8875         623 ----SHRNMVIV-SD-IKWPNGLTLDL-VQRRLYWVDAKLNE  657 (734)
Q Consensus       623 ----~~~~~lv~-~~-l~~P~glavD~-~~~~LYw~D~~~~~  657 (734)
                          .+..+++. .. +.||.+|+|+. ..+.||+.....++
T Consensus       217 ~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~~  258 (287)
T PF03022_consen  217 PYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQR  258 (287)
T ss_dssp             SB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--S
T ss_pred             CcCccchheeEEcCceeeccceeeeccccCceEEEEECcchH
Confidence                34444444 45 89999999983 26899998755443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.00061  Score=75.82  Aligned_cols=228  Identities=9%  Similarity=0.084  Sum_probs=134.1

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCe---EEEEEeC-CCcEEEEecCCCCceEEEEeCCCCCccceeeeccC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGM---IFWSDIS-EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY  558 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~---lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~  558 (734)
                      ..|+.++.+|.+...|.........-+|.|....   +|++... ...|+.+++++|..+.+. . ........++.+.+
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~-~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-A-LQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-c-CCCCccceEECCCC
Confidence            3688888888887777554333344577776554   3344432 357999999966544333 2 12233456777778


Q ss_pred             CcEEEEeCC--CCeEEEE--eCCC---CceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCc-eEEEE
Q psy8875         559 SHIYWTDAH--KNTIELA--NFEG---TMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSH-RNMVI  629 (734)
Q Consensus       559 ~~lY~td~~--~~~I~~~--~ldG---~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~-~~~lv  629 (734)
                      ++|.|+-..  ...|++.  ++++   ...+.+...........++.|...+|+|+. ......|+++++++.. ....+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            888887643  3356554  3332   223334433223345668888777777764 3334689998886432 22223


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC--CCCceEE
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW--QQKAIYK  703 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~--~~~~v~~  703 (734)
                      ..........++.+.+++|+++...  ...|+.+++++...+.+....   .....+++  .+..|+++..  +...|+.
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~  399 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP---ENKESPSWAIDSLHLVYSAGNSNESELYL  399 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC---CCccceEECCCCCEEEEEECCCCCceEEE
Confidence            2222233467788888889887543  357999999888777665421   12233444  5567777643  3456888


Q ss_pred             EeccCCCceEEE
Q psy8875         704 ANKFTGDNLTAI  715 (734)
Q Consensus       704 ~~~~~G~~~~~l  715 (734)
                      ++..+++...+.
T Consensus       400 vdl~~g~~~~Lt  411 (428)
T PRK01029        400 ISLITKKTRKIV  411 (428)
T ss_pred             EECCCCCEEEee
Confidence            887666554443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.25  E-value=4.8e-06  Score=69.79  Aligned_cols=73  Identities=15%  Similarity=0.264  Sum_probs=57.0

Q ss_pred             eeEEEeCCCCeEEEEecCC----------------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         593 RSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       593 ~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      ++|+|++..|.|||||.+.                .++|.+.++.....++++ .+|..||||++.+.+..|++++....
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEeccCc
Confidence            4789998889999999532                468999999887666555 56999999999999999999999999


Q ss_pred             eEEEEecCCC
Q psy8875         657 EISSCDYNGG  666 (734)
Q Consensus       657 ~I~~~~~dG~  666 (734)
                      +|.++-+.|.
T Consensus        80 Ri~rywl~Gp   89 (89)
T PF03088_consen   80 RILRYWLKGP   89 (89)
T ss_dssp             EEEEEESSST
T ss_pred             eEEEEEEeCC
Confidence            9999988773

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.23  E-value=0.00034  Score=74.54  Aligned_cols=198  Identities=13%  Similarity=0.187  Sum_probs=121.2

Q ss_pred             CCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875         514 TGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM  580 (734)
Q Consensus       514 ~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~  580 (734)
                      ..++|++|..    .++|+.++.+.+.... .+. .-..|+++ +.+.++.||++..         ..+.|.++++....
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g-~i~-~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLG-MTD-GGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEEE-EEE-ccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            5678888876    3788888877433222 233 23578887 9999999999999         78899999886543


Q ss_pred             eE-EEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEEecc------------------------------CCC
Q psy8875         581 RK-VLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM------------------------------DGS  623 (734)
Q Consensus       581 ~~-~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l------------------------------dG~  623 (734)
                      .. .|...      ....|..+++.|...+||++++.....+.++++                              ||+
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~  168 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGS  168 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCc
Confidence            32 22211      144566999999988999988552233333332                              333


Q ss_pred             ceE---------EEEEcCC---------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEE-----cCCC--CC
Q psy8875         624 HRN---------MVIVSDI---------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVL-----YSPQ--TL  678 (734)
Q Consensus       624 ~~~---------~lv~~~l---------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~-----~~~~--~~  678 (734)
                      ...         .+....+         ..|   ++....++++|+... +.|+.+++.+.......     ....  ..
T Consensus       169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~  244 (352)
T TIGR02658       169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG  244 (352)
T ss_pred             eEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc
Confidence            333         1111111         223   222335677777766 99999998765433221     1100  01


Q ss_pred             CCCeE---EEE--ECCEEEEEe-C--------CCCceEEEeccCCCceEEEecc
Q psy8875         679 SHPFS---IST--FEDWLYWSD-W--------QQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       679 ~~P~g---l~v--~~~~lywtd-~--------~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      -.|-|   +++  .+++||++. .        ..+.|+.++..+++.+..|...
T Consensus       245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG  298 (352)
T TIGR02658       245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG  298 (352)
T ss_pred             cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC
Confidence            13433   555  689999953 2        2258999999888888877643

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.00077  Score=75.13  Aligned_cols=227  Identities=11%  Similarity=0.110  Sum_probs=140.4

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.++.++.....+..........+|.+..++|+++....  ..|+..++.+|.. ..+.. ........++.+.+++
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~-~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVAN-FKGSNSAPAWSPDGRT  253 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeec-CCCCccceEECCCCCE
Confidence            357777788877666655555566788998888888776433  4699999985543 33322 1123346777777888


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++-..  ...|+++++++...+.+.. ........++.|...+|+++. .+....|++.++++...+.+.... ....
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~  331 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNT  331 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC-CCcC
Confidence            8876433  4578898888776555432 222334567888777777653 333468999988876554443222 2223


Q ss_pred             eEEEecCCCeEEEEeCCC--CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEeccCCCceE
Q psy8875         638 GLTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANKFTGDNLT  713 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~~~G~~~~  713 (734)
                      ..++.+.++.|+++....  ..|+.+++++...+.+... .....| ..+-.+..|+++...  ...|+.++. +|+...
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~  408 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TRDESP-SFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQ  408 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CCccCc-eECCCCCEEEEEEecCCCEEEEEEEC-CCCceE
Confidence            467888888988876433  3689999887776655432 112222 233356677766432  234666654 677666


Q ss_pred             EEe
Q psy8875         714 AIT  716 (734)
Q Consensus       714 ~l~  716 (734)
                      .+.
T Consensus       409 ~l~  411 (427)
T PRK02889        409 RLS  411 (427)
T ss_pred             Eee
Confidence            664

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=98.21  E-value=6.8e-07  Score=54.54  Aligned_cols=24  Identities=50%  Similarity=1.124  Sum_probs=22.9

Q ss_pred             cceeecCCCcEecCCCCccccccC
Q psy8875         409 GYMCECNEGYKLSSNRHTCIDIDE  432 (734)
Q Consensus       409 ~~~C~C~~G~~l~~~~~~C~~~~e  432 (734)
                      ||+|.|++||+|.+++++|.||||
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            699999999999999999999997

>KOG4260|consensus

Probab=98.21  E-value=1.3e-06  Score=85.20  Aligned_cols=145  Identities=28%  Similarity=0.627  Sum_probs=82.0

Q ss_pred             CeecCCcccCCCCCCCCCCCCCCCCCCCCCC-CceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCcccccccccc
Q psy8875         276 NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTA-GQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFI  354 (734)
Q Consensus       276 ~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~-~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~  354 (734)
                      .||..-.+|     |++|.-+.+|.  +|+. .+.+|.-.|.|--.+.                    ..+.-.|   .|
T Consensus       123 lCvdqLkvC-----Cp~gtyGpdCl--~Cpggser~C~GnG~C~GdGs--------------------R~GsGkC---kC  172 (350)
T KOG4260|consen  123 LCVDQLKVC-----CPDGTYGPDCL--QCPGGSERPCFGNGSCHGDGS--------------------REGSGKC---KC  172 (350)
T ss_pred             hhhhhheec-----cCCCCcCCccc--cCCCCCcCCcCCCCcccCCCC--------------------CCCCCcc---cc
Confidence            356666666     88888888876  2422 2334544344443211                    1233344   45


Q ss_pred             CCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCccee-ecCCCcEecCCCCccccccCc
Q psy8875         355 PPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMC-ECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       355 ~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C-~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      .+||++..|.          +|..+|.|..+.=..--|..=...|...|.- +..--| .|..||.|.  ..-|.|||||
T Consensus       173 ~~GY~Gp~C~----------~Cg~eyfes~Rne~~lvCt~Ch~~C~~~Csg-~~~k~C~kCkkGW~ld--e~gCvDvnEC  239 (350)
T KOG4260|consen  173 ETGYTGPLCR----------YCGIEYFESSRNEQHLVCTACHEGCLGVCSG-ESSKGCSKCKKGWKLD--EEGCVDVNEC  239 (350)
T ss_pred             cCCCCCcccc----------ccchHHHHhhcccccchhhhhhhhhhcccCC-CCCCChhhhcccceec--ccccccHHHH
Confidence            5677666664          6677765543221111122111223323321 223334 588888884  6678888888


Q ss_pred             CC-CCCc--ccceeccCCceEEecCCCeeeCCC
Q psy8875         434 ET-PGSC--SQICLNEKGGFKCECVAGYIKDPH  463 (734)
Q Consensus       434 ~~-~~~C--~~~C~n~~g~~~C~C~~gy~~~~~  463 (734)
                      ++ +.+|  .|+|+|+.|||+|.+.+||....+
T Consensus       240 ~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d  272 (350)
T KOG4260|consen  240 QNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVD  272 (350)
T ss_pred             hcCCCCCChhheeecCCCceEecccccccCChH
Confidence            64 4556  468899999999888888887544

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.19  E-value=1e-06  Score=63.10  Aligned_cols=40  Identities=38%  Similarity=0.909  Sum_probs=33.9

Q ss_pred             cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCcc
Q psy8875         388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      |||||+.....|.  +.|+|+.|+|+|.|++||++..+++.|
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTSSEE
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCCCcC
Confidence            5889998777886  699999999999999999977666554

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.17  E-value=0.0023  Score=65.23  Aligned_cols=227  Identities=15%  Similarity=0.090  Sum_probs=130.0

Q ss_pred             ccceEEeecCCCceEEEecC-CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIVNS-TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~-~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+..++........... ...+..+.+.+..+.|+.+ ...+.|+..++..+.....+ ......+..+++.+. +.
T Consensus        30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~-~~  106 (289)
T cd00200          30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASG-SSDKTIRLWDLETGECVRTL-TGHTSYVSSVAFSPD-GR  106 (289)
T ss_pred             CcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEE-cCCCeEEEEEcCcccceEEE-eccCCcEEEEEEcCC-CC
Confidence            34455555544333222222 2333478887655455544 34778888887744333222 222335667777754 56


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      ++++....+.|.+.++........+......+..+++++...+|+...  ..+.|...++........+.........|+
T Consensus       107 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  184 (289)
T cd00200         107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRTGKCVATLTGHTGEVNSVA  184 (289)
T ss_pred             EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccccccceeEecCccccceEE
Confidence            666666678899999874333333333445688999998755555544  235677777653333323333333567888


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.+.+..|+.+.. .+.|...++........+..  ......++++.. +.++++....+.|...+..+++....+.
T Consensus       185 ~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         185 FSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS  258 (289)
T ss_pred             ECCCcCEEEEecC-CCcEEEEECCCCceecchhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence            8866667766655 67888888765433322211  122455666644 5566665556777777766666555554

>KOG1219|consensus

Probab=98.16  E-value=2e-06  Score=103.71  Aligned_cols=107  Identities=26%  Similarity=0.658  Sum_probs=80.5

Q ss_pred             CCCCCceecCCC-CeecC---CcccCCCCCCCCCCCCCCCCC--CCCCCCceecCCCCccccccccccCCCCCCCCCCCC
Q psy8875         264 TCRSDEFTCANG-NCIQR---IWLCDGDDDCKDGSDEKSCQP--VKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPN  337 (734)
Q Consensus       264 ~C~~~~~~C~~g-~Ci~~---~~~Cdg~~dC~dgsDe~~C~~--~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~  337 (734)
                      .|..++  |++| +|+..   .+.|    .|+..+.+.+|+.  .+|.+.  +|.++++||+.                 
T Consensus      3866 ~C~~np--CqhgG~C~~~~~ggy~C----kCpsqysG~~CEi~~epC~sn--PC~~GgtCip~----------------- 3920 (4289)
T KOG1219|consen 3866 PCNDNP--CQHGGTCISQPKGGYKC----KCPSQYSGNHCEIDLEPCASN--PCLTGGTCIPF----------------- 3920 (4289)
T ss_pred             ccccCc--ccCCCEecCCCCCceEE----eCcccccCcccccccccccCC--CCCCCCEEEec-----------------
Confidence            465544  9998 99876   7899    9999999999984  467665  89999999993                 


Q ss_pred             CCCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCC
Q psy8875         338 ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEG  417 (734)
Q Consensus       338 ~~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G  417 (734)
                            .+.|.|   .|+.||+|.+|...                     .++||..+.++-+..|+|++|+|.|.|.+|
T Consensus      3921 ------~n~f~C---nC~~gyTG~~Ce~~---------------------Gi~eCs~n~C~~gg~C~n~~gsf~CncT~g 3970 (4289)
T KOG1219|consen 3921 ------YNGFLC---NCPNGYTGKRCEAR---------------------GISECSKNVCGTGGQCINIPGSFHCNCTPG 3970 (4289)
T ss_pred             ------CCCeeE---eCCCCccCceeecc---------------------cccccccccccCCceeeccCCceEeccChh
Confidence                  456777   55666666655432                     266776655555678999999999999999


Q ss_pred             cEecCCCCcccc
Q psy8875         418 YKLSSNRHTCID  429 (734)
Q Consensus       418 ~~l~~~~~~C~~  429 (734)
                      |    -+++|.+
T Consensus      3971 ~----~gr~c~~ 3978 (4289)
T KOG1219|consen 3971 I----LGRTCCA 3978 (4289)
T ss_pred             H----hcccCcc
Confidence            9    4667743

>KOG4260|consensus

Probab=98.16  E-value=3.2e-06  Score=82.52  Aligned_cols=78  Identities=33%  Similarity=0.794  Sum_probs=59.7

Q ss_pred             CCCCCCCCCCCCc-cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcCC-CCCc---ccceeccC
Q psy8875         375 DCPLMQDEDPTKC-GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSC---SQICLNEK  447 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C---~~~C~n~~  447 (734)
                      .|..|+.-+-..| |||||+..+..|.  |.|+|+.|+|+|.+++||+.        ++|+|+. ...|   ...|+|+.
T Consensus       221 kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~--------g~d~C~~~~d~~~~kn~~c~ni~  292 (350)
T KOG4260|consen  221 KCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKK--------GVDECQFCADVCASKNRPCMNID  292 (350)
T ss_pred             hhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccC--------ChHHhhhhhhhcccCCCCcccCC
Confidence            6778884433358 9999998888885  58999999999999999954        2566642 1223   23689999


Q ss_pred             CceEEecCCCeee
Q psy8875         448 GGFKCECVAGYIK  460 (734)
Q Consensus       448 g~~~C~C~~gy~~  460 (734)
                      ++|+|.|..|+..
T Consensus       293 ~~~r~v~f~~~~~  305 (350)
T KOG4260|consen  293 GQYRCVCFSGLII  305 (350)
T ss_pred             ccEEEEeccccee
Confidence            9999999998765

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.00084  Score=74.29  Aligned_cols=192  Identities=8%  Similarity=0.009  Sum_probs=125.8

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.+++.+.....+........+.+|.+...+|.++...  ...|+.++++++..+ .+.... ..-....+.+.+++
T Consensus       213 ~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~-~~d~~p~~SPDG~~  290 (419)
T PRK04043        213 PTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLT-QITNYP-GIDVNGNFVEDDKR  290 (419)
T ss_pred             CEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEE-EcccCC-CccCccEECCCCCE
Confidence            46888888887777776543344556788878788776543  357999998855433 332211 11223456667888


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------C-ceEEEeccCCCceEEEEEc
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------N-AKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~-~~I~~~~ldG~~~~~lv~~  631 (734)
                      |||+...  ...|+++++++...+.+.......   .++.|..++|.++....      . ..|+.+++++...+.|...
T Consensus       291 I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~---~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~  367 (419)
T PRK04043        291 IVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN---SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN  367 (419)
T ss_pred             EEEEECCCCCceEEEEECCCCCeEeCccCCCcC---ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence            9888653  448999999887765554332222   37888888887776432      1 5899999988776655443


Q ss_pred             CCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHP  681 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P  681 (734)
                      ..  -...++.+.+++||++..  +...|..++++|.....+......+..|
T Consensus       368 ~~--~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~~~p  417 (419)
T PRK04043        368 GV--NQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKIQSI  417 (419)
T ss_pred             CC--cCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCccCCC
Confidence            22  224678888888988864  3446999999998777775533344444

>KOG1219|consensus

Probab=98.08  E-value=4e-06  Score=101.18  Aligned_cols=83  Identities=27%  Similarity=0.735  Sum_probs=62.9

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc--ccCcCCCCCcc--cceeccCCce
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID--IDECETPGSCS--QICLNEKGGF  450 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~--~~eC~~~~~C~--~~C~n~~g~~  450 (734)
                      .|+.-|.+..+.-++..|..+++.-...|...+++|.|.|+.||    .|++|+.  ++||+. ..|.  ..|+|..|+|
T Consensus      3889 kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gy----TG~~Ce~~Gi~eCs~-n~C~~gg~C~n~~gsf 3963 (4289)
T KOG1219|consen 3889 KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGY----TGKRCEARGISECSK-NVCGTGGQCINIPGSF 3963 (4289)
T ss_pred             eCcccccCcccccccccccCCCCCCCCEEEecCCCeeEeCCCCc----cCceeeccccccccc-ccccCCceeeccCCce
Confidence            45555554432235667776655556689999999999999999    7889964  788974 3564  4899999999


Q ss_pred             EEecCCCeeeCC
Q psy8875         451 KCECVAGYIKDP  462 (734)
Q Consensus       451 ~C~C~~gy~~~~  462 (734)
                      .|.|.+||.+..
T Consensus      3964 ~CncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3964 HCNCTPGILGRT 3975 (4289)
T ss_pred             EeccChhHhccc
Confidence            999999998753

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.07  E-value=7.9e-06  Score=58.78  Aligned_cols=40  Identities=45%  Similarity=0.812  Sum_probs=36.1

Q ss_pred             EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       541 ~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ++..++..|.|||+||..++|||+|.....|++++++|..
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            3445788999999999999999999999999999999875

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.07  E-value=0.00036  Score=70.73  Aligned_cols=182  Identities=15%  Similarity=0.157  Sum_probs=118.0

Q ss_pred             EEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-----CCceEEEEc-------CCCCCceeEEEeCCCCe-----
Q psy8875         541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-----GTMRKVLVR-------SYLDEPRSLALNPIDGW-----  603 (734)
Q Consensus       541 ~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-----G~~~~~l~~-------~~l~~P~~iavD~~~g~-----  603 (734)
                      .+...+.+|.|||+.+ ++.++++|..++.....+.+     |.....++.       .....|.||++....++     
T Consensus        17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~   95 (336)
T TIGR03118        17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE   95 (336)
T ss_pred             ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence            3456788999999986 56888899988888888877     444333332       12357999999855443     


Q ss_pred             --------EEEEecCCCceEEEec--cCCC---ceEEEEEc--CCCCceeEEEecC--CCeEEEEeCCCCeEEEEecCCC
Q psy8875         604 --------MYWSDWGQNAKIERAG--MDGS---HRNMVIVS--DIKWPNGLTLDLV--QRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       604 --------LYwtd~~~~~~I~~~~--ldG~---~~~~lv~~--~l~~P~glavD~~--~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                              ||.++.   +.|.-.+  .+-+   ...+++..  ....-.||||-..  ..+||-+|-..++|.++  |++
T Consensus        96 g~~~~a~Fif~tEd---GTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVF--d~~  170 (336)
T TIGR03118        96 GITGPSRFLFVTED---GTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVF--KGS  170 (336)
T ss_pred             CcccceeEEEEeCC---ceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEe--cCc
Confidence                    555552   3443322  2222   12233332  1233468888643  67999999999999986  455


Q ss_pred             ceEEEEcC----C--CCCCCCeEEEEECCEEEEEeCCC-------------CceEEEeccCCCceEEEecccccCCCccC
Q psy8875         667 NRRLVLYS----P--QTLSHPFSISTFEDWLYWSDWQQ-------------KAIYKANKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       667 ~~~~i~~~----~--~~~~~P~gl~v~~~~lywtd~~~-------------~~v~~~~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      .+++.+..    +  ..-..|+.|...+++||+|=...             +-|-.++ .+|..++.+++...|..|++|
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRVASSGRLNAPWGL  249 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEeccCCcccCCcee
Confidence            44333221    1  22346899999999999984332             3444444 578888888888889999998


Q ss_pred             CC
Q psy8875         728 PG  729 (734)
Q Consensus       728 ~~  729 (734)
                      +.
T Consensus       250 a~  251 (336)
T TIGR03118       250 AI  251 (336)
T ss_pred             ee
Confidence            64

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.06  E-value=0.002  Score=71.91  Aligned_cols=223  Identities=11%  Similarity=0.110  Sum_probs=137.2

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+..+.+|.+...+.........++|.+..++|.++....  ..|+..++.++.. +.+.. .......+++.+.++.
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-~~l~~-~~g~~~~~~wSPDG~~  261 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-KVVAS-FRGHNGAPAFSPDGSR  261 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-EEEec-CCCccCceeECCCCCE
Confidence            356666778877666555444567889999888888875443  4688888875433 23322 1122345777777788


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|++.++++...+.+.. ........++.|...+|+++. ......|+..++++...+.+ ... .  .
T Consensus       262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~-~--~  336 (429)
T PRK01742        262 LAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR-G--Y  336 (429)
T ss_pred             EEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC-C--C
Confidence            8887533  3368888888776655543 333456788888777777664 33356899988887765543 221 1  2


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCC-CceEEEeccCCCceEEEe
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQ-KAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~-~~v~~~~~~~G~~~~~l~  716 (734)
                      .+++.+.++.|+++..  ..|..+++.+...+.+... .....| ..+-.+..|+++.... ..++.+...+|+..+.|.
T Consensus       337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~-~~~~~~-~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        337 SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSST-FLDESP-SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCC-CCCCCc-eECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence            3567777888887754  5677788876655544321 111112 2333566777776532 334444445787777775

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.02  E-value=0.0013  Score=73.82  Aligned_cols=184  Identities=9%  Similarity=0.033  Sum_probs=117.7

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.+++.+.....+........+.+|.+...+|+++....+  .|+.++++++..+ .+.. ........++.+.++.|
T Consensus       243 ~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~-~~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        243 EIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITR-HRAIDTEPSWHPDGKSL  320 (448)
T ss_pred             EEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECcc-CCCCccceEECCCCCEE
Confidence            588888877666555432223346788888888888644333  5999998855433 2222 22334556677777888


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...  ...|+++++++...+.+... .....+.++.|...+||++... ....|++.++++...+.+.....  -..
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~-g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~  397 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGKVSRLTFE-GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DES  397 (448)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEEecC-CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCC
Confidence            887543  45799999876655444322 2233456888888889887643 23588999998876554432222  123


Q ss_pred             EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEE
Q psy8875         639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~  672 (734)
                      .++.+.++.|+++...  ...|+.++.+|...+.+.
T Consensus       398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             ceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence            3677778888887643  335888899998777664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.00  E-value=0.0025  Score=69.30  Aligned_cols=188  Identities=11%  Similarity=0.105  Sum_probs=117.9

Q ss_pred             ccceEEeecCCCceEEEecCCcce-EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~-~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      .+.|..|+....+....++....+ .++.+.+..+++|+++ ..+.|.++++..+.....+ . .-..|.++|+.+.++.
T Consensus        15 ~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-rdg~vsviD~~~~~~v~~i-~-~G~~~~~i~~s~DG~~   91 (369)
T PF02239_consen   15 SGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN-RDGTVSVIDLATGKVVATI-K-VGGNPRGIAVSPDGKY   91 (369)
T ss_dssp             GTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE-TTSEEEEEETTSSSEEEEE-E--SSEEEEEEE--TTTE
T ss_pred             CCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc-CCCeEEEEECCcccEEEEE-e-cCCCcceEEEcCCCCE
Confidence            567888887766655555544444 5566777678899987 4689999999855433333 3 2357999999988999


Q ss_pred             EEEEeCCCCeEEEEeCCCCc-eEEEEcCCC----C--CceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcC
Q psy8875         561 IYWTDAHKNTIELANFEGTM-RKVLVRSYL----D--EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSD  632 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~-~~~l~~~~l----~--~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~  632 (734)
                      ||.++...+.|.+.+..... .+.+-....    .  .+.+|.-.+.+ ..|+....+.++|+..+.... ...+....-
T Consensus        92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~  170 (369)
T PF02239_consen   92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV  170 (369)
T ss_dssp             EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred             EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccccceeeecc
Confidence            99999999999998875433 333322211    2  33466555544 445544445689999986543 222222233


Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc
Q psy8875         633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       633 l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~  673 (734)
                      -..|++..+|+.+.++|.+-...+.|..++........++.
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~  211 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID  211 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence            46799999998888888887778899999977665555543

...

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.94  E-value=6.9e-06  Score=56.05  Aligned_cols=31  Identities=39%  Similarity=0.944  Sum_probs=26.8

Q ss_pred             CCCcccceeccCCceEEecCCCeeeCCCCCc
Q psy8875         436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPT  466 (734)
Q Consensus       436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t  466 (734)
                      ++.|+|+|++++++|+|.|++||.+..++++
T Consensus         5 NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~t   35 (36)
T PF14670_consen    5 NGGCSHICVNTPGSYRCSCPPGYKLAEDGRT   35 (36)
T ss_dssp             GGGSSSEEEEETTSEEEE-STTEEE-TTSSS
T ss_pred             CCCcCCCCccCCCceEeECCCCCEECcCCCC
Confidence            5789999999999999999999999988765

...

>PRK05137 tolB translocation protein TolB; Provisional

Probab=97.93  E-value=0.0022  Score=71.73  Aligned_cols=185  Identities=15%  Similarity=0.133  Sum_probs=119.9

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+..++.+.....+........+.+|.+...+|+++-..  ...|+.+++.++..+ .+.. ........++.+.++.
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~-~~~~~~~~~~spDG~~  303 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD-SPAIDTSPSYSPDGSQ  303 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccC-CCCccCceeEcCCCCE
Confidence            46888888776665554333344577888878888776433  346999998855433 2322 2223345666766777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|++++++|...+.+.... ......++.|...+|+++... ....|+..+++|...+.+...  ....
T Consensus       304 i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~  380 (435)
T PRK05137        304 IVFESDRSGSPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVE  380 (435)
T ss_pred             EEEEECCCCCCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCC
Confidence            7776533  457999999887666655322 223456788888888887642 235899989888766544322  2345


Q ss_pred             eEEEecCCCeEEEEeCCC-----CeEEEEecCCCceEEEE
Q psy8875         638 GLTLDLVQRRLYWVDAKL-----NEISSCDYNGGNRRLVL  672 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~-----~~I~~~~~dG~~~~~i~  672 (734)
                      .+++.+.++.||++-...     ..|+.++++|...+.+.
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            678888888888874322     47999999998776554

>KOG1217|consensus

Probab=97.92  E-value=0.00033  Score=79.14  Aligned_cols=274  Identities=23%  Similarity=0.518  Sum_probs=144.1

Q ss_pred             CCCCCCcCCCCCC-Cccccc-CcCCCCceEeCc-cccCCCCCCCCCCCCCCCCccCccccccCCCCCC---CcccCCCcc
Q psy8875         121 CSDGSDEKSCKNR-TCQASE-FRCGNNRCIPNH-WQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS---HLCLPAPQI  194 (734)
Q Consensus       121 C~dg~de~~C~~~-~C~~~~-f~C~~g~Ci~~~-~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~---~~C~~~~~~  194 (734)
                      |..|+....|... .|.... ..+..+.|+... ........|..|+....        |......|.   +.|.+...|
T Consensus       114 c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~--------~~~~~~~C~~~~~~c~~~~~C  185 (487)
T KOG1217|consen  114 CPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEP--------CETDLDECIQYSSPCQNGGTC  185 (487)
T ss_pred             CCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCccccc--------ccccccccccCCCCcCCCccc
Confidence            5566555555433 355443 244566676543 23345567888887765        332223442   247777777


Q ss_pred             cCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCC---CCCCCcee
Q psy8875         195 NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE---TCRSDEFT  271 (734)
Q Consensus       195 ~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~---~C~~~~~~  271 (734)
                      .+....|.|.|++||.+..++..         .       ..+.|+.. ..|.    |..+.....|..   .|...   
T Consensus       186 ~~~~~~~~C~c~~~~~~~~~~~~---------~-------~~~~c~~~-~~~~----~~~g~~~~~c~~~~~~~~~~---  241 (487)
T KOG1217|consen  186 VNTGGSYLCSCPPGYTGSTCETT---------G-------NGGTCVDS-VACS----CPPGARGPECEVSIVECASG---  241 (487)
T ss_pred             ccCCCCeeEeCCCCccCCcCcCC---------C-------CCceEecc-eecc----CCCCCCCCCcccccccccCC---
Confidence            77777899999999988765432         0       11233332 2222    444444444431   22211   


Q ss_pred             cCCCCeecC--CcccCCCCCCCCCCCCCCC----CCCCCCCCceecCCCCcccccc--ccccCCCCCCCC----CC---C
Q psy8875         272 CANGNCIQR--IWLCDGDDDCKDGSDEKSC----QPVKCTAGQFTCQNLTACIPDK--WVCDGDTVEKDS----TC---P  336 (734)
Q Consensus       272 C~~g~Ci~~--~~~Cdg~~dC~dgsDe~~C----~~~~C~~~~~~C~~~~~Ci~~~--~~Cdg~~dC~d~----~C---~  336 (734)
                       . ++|+..  .+.|    .|..|+-...+    ....|..... |.++++|+...  +.|.    |..+    .|   .
T Consensus       242 -~-~~c~~~~~~~~C----~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~~C~----C~~g~~g~~~~~~~  310 (487)
T KOG1217|consen  242 -D-GTCVNTVGSYTC----RCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSYRCT----CPPGFTGRLCTECV  310 (487)
T ss_pred             -C-CcccccCCceee----eCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcceee----CCCCCCCCCCcccc
Confidence             1 233322  2233    33344333332    1334544433 66667777643  3441    4333    11   0


Q ss_pred             CCCCCCC-CccccccccccCCCCCcccccc----cccccCCCCCCCCCCCCCCCCcc-c-cccccCCCCCcCcccc-CCC
Q psy8875         337 NATPMNS-SVRIEGAVAFIPPGFAMAMKIV----RTAVCDKHPDCPLMQDEDPTKCG-V-DECAKDNGGCLHKCVD-LPV  408 (734)
Q Consensus       337 ~~~~c~~-~~~~~C~~~~~~~~~~~~~C~~----~~~~C~~~~~C~~g~d~~~~~C~-~-~eC~~~~~~C~~~C~~-~~~  408 (734)
                      ....|.. .....|.+        +..|..    ....|    .|+.++.  +..|. . ++|...+......|.+ ..+
T Consensus       311 ~~~~C~~~~~~~~c~~--------g~~C~~~~~~~~~~C----~c~~~~~--g~~C~~~~~~C~~~~~~~~~~c~~~~~~  376 (487)
T KOG1217|consen  311 DVDECSPRNAGGPCAN--------GGTCNTLGSFGGFRC----ACGPGFT--GRRCEDSNDECASSPCCPGGTCVNETPG  376 (487)
T ss_pred             ccccccccccCCcCCC--------CcccccCCCCCCCCc----CCCCCCC--CCccccCCccccCCccccCCEeccCCCC
Confidence            1111110 01111210        122311    11223    5555533  34563 3 3788765555678999 799


Q ss_pred             cceeecCCCcEec--CCCCccccccCcCCCCCcccceeccCCceEEecCC
Q psy8875         409 GYMCECNEGYKLS--SNRHTCIDIDECETPGSCSQICLNEKGGFKCECVA  456 (734)
Q Consensus       409 ~~~C~C~~G~~l~--~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~  456 (734)
                      +|.|.|+.+|.+.  .+...|.++++|..    ...|.+..+++.|. ..
T Consensus       377 ~~~c~~~~~~~~~~~~~~~~~~~~~~c~~----~~~c~~~~~~~~c~-~~  421 (487)
T KOG1217|consen  377 SYRCACPAGFAGKANGDGVGCEDIDECSG----CGDCVNGPGGGACT-PP  421 (487)
T ss_pred             CeEecCCCccccCCccccccccccccccC----CcceeccCCCCccc-cC
Confidence            9999999999864  57788999998865    44678888999998 77

>PRK04922 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.0021  Score=71.83  Aligned_cols=186  Identities=9%  Similarity=0.015  Sum_probs=118.7

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.+++.+.....+........+++|.+..++|+++-...  ..|+.+++.++..+. +.. .......+++.+.++.
T Consensus       228 ~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~-~~~~~~~~~~spDG~~  305 (433)
T PRK04922        228 SAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN-HFGIDTEPTWAPDGKS  305 (433)
T ss_pred             cEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc-CCCCccceEECCCCCE
Confidence            358888887766655543222334678888888888764333  469999988554332 222 2223345677777777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|+++++++...+.+... ......+++.|...+|+++... ....|+..++++...+.+....  ...
T Consensus       306 l~f~sd~~g~~~iy~~dl~~g~~~~lt~~-g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--~~~  382 (433)
T PRK04922        306 IYFTSDRGGRPQIYRVAASGGSAERLTFQ-GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--LDE  382 (433)
T ss_pred             EEEEECCCCCceEEEEECCCCCeEEeecC-CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--CCC
Confidence            8777533  34699999877655544422 2334568899988899887532 2347889898776655443221  234


Q ss_pred             eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEc
Q psy8875         638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~  673 (734)
                      .+++.+.+..|+++..  ....|+.++++|..++.+..
T Consensus       383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~  420 (433)
T PRK04922        383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS  420 (433)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence            5678777888888754  34579999999887766643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=0.00063  Score=68.64  Aligned_cols=165  Identities=15%  Similarity=0.228  Sum_probs=104.1

Q ss_pred             eEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce------EEEEeC---CCCCccceee
Q psy8875         485 IRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER------TVVIEE---DKTIADGLAV  554 (734)
Q Consensus       485 I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~------~~~~~~---~~~~p~glAv  554 (734)
                      |..++++|.-+..+ +..+..|.+|+|.. .+..-.+|...++++.+.++.++..      ++.+..   .-..-+|||.
T Consensus       110 iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~  188 (316)
T COG3204         110 IVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAW  188 (316)
T ss_pred             EEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeec
Confidence            44444444443333 23466788888872 3444456777778887777644321      111111   1224579999


Q ss_pred             eccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc----C----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875         555 DWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR----S----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR  625 (734)
Q Consensus       555 D~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~----~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~  625 (734)
                      |+..+.||++-..+ -.|+..+..-+...+-+.    .    .+....|+.+|+.++.|++... +...|...+.+|..+
T Consensus       189 d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-ESr~l~Evd~~G~~~  267 (316)
T COG3204         189 DPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-ESRRLLEVDLSGEVI  267 (316)
T ss_pred             CCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-CCceEEEEecCCCee
Confidence            99999999987653 356666533221111110    0    1456679999999999988874 457888889999865


Q ss_pred             EEEEE--------cCCCCceeEEEecCCCeEEEEe
Q psy8875         626 NMVIV--------SDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       626 ~~lv~--------~~l~~P~glavD~~~~~LYw~D  652 (734)
                      ..+..        .++.+|.|||+| ..+.||++.
T Consensus       268 ~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS  301 (316)
T COG3204         268 ELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS  301 (316)
T ss_pred             eeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence            55432        357889999999 788999875

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.91  E-value=4.1e-05  Score=64.19  Aligned_cols=70  Identities=24%  Similarity=0.310  Sum_probs=56.3

Q ss_pred             ceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc
Q psy8875         551 GLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA  613 (734)
Q Consensus       551 glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~  613 (734)
                      +|+|+..++.|||||+.                 ++++.+.++..+..++|+ .+|.-|+|||+.+....|++++.. ..
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~-~~L~fpNGVals~d~~~vlv~Et~-~~   79 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL-DGLYFPNGVALSPDESFVLVAETG-RY   79 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE-EEESSEEEEEE-TTSSEEEEEEGG-GT
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh-hCCCccCeEEEcCCCCEEEEEecc-Cc
Confidence            68899777999999974                 378999999988877777 668999999999999999999976 48


Q ss_pred             eEEEeccCC
Q psy8875         614 KIERAGMDG  622 (734)
Q Consensus       614 ~I~~~~ldG  622 (734)
                      +|.|..+.|
T Consensus        80 Ri~rywl~G   88 (89)
T PF03088_consen   80 RILRYWLKG   88 (89)
T ss_dssp             EEEEEESSS
T ss_pred             eEEEEEEeC
Confidence            999999887

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.89  E-value=0.0065  Score=62.42  Aligned_cols=229  Identities=14%  Similarity=0.135  Sum_probs=135.5

Q ss_pred             ceeeeeec--cceEEeecC-CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEec----------CCCCceEEE
Q psy8875         475 ASLLFARK--HDIRKISLD-HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI----------DEGSERTVV  541 (734)
Q Consensus       475 ~~l~~~~~--~~I~~i~l~-~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l----------~~g~~~~~~  541 (734)
                      -+|.|+..  ..+..+.++ ...+......+.++-||+..  .++||.+.  ..+|++...          .++...-.+
T Consensus        18 ~Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t--~~qiw~f~~~~n~l~~~~~~~~~D~~yv   93 (335)
T TIGR03032        18 LSLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGT--RYQLWRFANVDNLLPAGQTHPGYDRLYV   93 (335)
T ss_pred             eEEEEEeeecceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEE--cceeEEcccccccccccccCCCCCeEEe
Confidence            34555553  345555544 22344445567888999887  67888875  334555411          111111111


Q ss_pred             ----EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE--------EEEcCCCCCceeEEEeCCCCeEEEEec
Q psy8875         542 ----IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK--------VLVRSYLDEPRSLALNPIDGWMYWSDW  609 (734)
Q Consensus       542 ----~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~--------~l~~~~l~~P~~iavD~~~g~LYwtd~  609 (734)
                          ..++--....||+  ..+.|++.+..-.-+-..+..-+...        .+..++.-+-+|||++ ...--|+|..
T Consensus        94 Pr~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~  170 (335)
T TIGR03032        94 PRASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTAL  170 (335)
T ss_pred             eeeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEe
Confidence                1112234556666  46677777766555555554444322        1222344567899995 2334566764


Q ss_pred             CCC--ceEEEecc-CCCceE-----EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC
Q psy8875         610 GQN--AKIERAGM-DGSHRN-----MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP  681 (734)
Q Consensus       610 ~~~--~~I~~~~l-dG~~~~-----~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P  681 (734)
                      +..  ..=||-+. +|....     .++.+.+..|.+.-+  .+++||+.|+++++|.+++.+.+..+++..-   -+.|
T Consensus       171 ~~sD~~~gWR~~~~~gG~vidv~s~evl~~GLsmPhSPRW--hdgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~  245 (335)
T TIGR03032       171 SQSDVADGWREGRRDGGCVIDIPSGEVVASGLSMPHSPRW--YQGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFT  245 (335)
T ss_pred             eccCCcccccccccCCeEEEEeCCCCEEEcCccCCcCCcE--eCCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCC
Confidence            432  23344333 222111     133467788888887  5899999999999999999985555555543   4689


Q ss_pred             eEEEEECCEEEEEeCCCC-------------------ceEEEeccCCCceEEE
Q psy8875         682 FSISTFEDWLYWSDWQQK-------------------AIYKANKFTGDNLTAI  715 (734)
Q Consensus       682 ~gl~v~~~~lywtd~~~~-------------------~v~~~~~~~G~~~~~l  715 (734)
                      .||++.++.+|+.-++.+                   .|+.+|..+|..+..|
T Consensus       246 rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l  298 (335)
T TIGR03032       246 RGLAFAGDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWL  298 (335)
T ss_pred             cccceeCCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEE
Confidence            999999888888755432                   3778888888765543

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.85  E-value=0.00098  Score=71.62  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=99.2

Q ss_pred             CCccceeeeccCCcEEEEeCCC-------------CeEEEEeCC--------CCceEEEEcCCCCCceeEEEeCCCCeEE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHK-------------NTIELANFE--------GTMRKVLVRSYLDEPRSLALNPIDGWMY  605 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~-------------~~I~~~~ld--------G~~~~~l~~~~l~~P~~iavD~~~g~LY  605 (734)
                      ..-..|++++.+ +||++--..             ++|.+.+.+        +... .++..++.+|.|++++|.+|.||
T Consensus       177 H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~-~i~s~G~RN~qGl~w~P~tg~Lw  254 (399)
T COG2133         177 HFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNS-EIWSYGHRNPQGLAWHPVTGALW  254 (399)
T ss_pred             cCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCc-ceEEeccCCccceeecCCCCcEE
Confidence            344579999776 999985432             344444333        3332 24456788999999999999999


Q ss_pred             EEecCC---C-----ceE-----------E-------EeccCCCceEEEEEcC-----CCCceeEEEecCC-------Ce
Q psy8875         606 WSDWGQ---N-----AKI-----------E-------RAGMDGSHRNMVIVSD-----IKWPNGLTLDLVQ-------RR  647 (734)
Q Consensus       606 wtd~~~---~-----~~I-----------~-------~~~ldG~~~~~lv~~~-----l~~P~glavD~~~-------~~  647 (734)
                      .++.+.   .     ..|           +       +..+++.....++...     -.-|.||++- .+       +.
T Consensus       255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy-~G~~fP~~r~~  333 (399)
T COG2133         255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFY-TGDLFPAYRGD  333 (399)
T ss_pred             EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEe-cCCcCccccCc
Confidence            999765   1     111           1       0111111111111111     1236788883 23       68


Q ss_pred             EEEEeCCCCeEEEEecCCCc---eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC-CCceEEEecc
Q psy8875         648 LYWVDAKLNEISSCDYNGGN---RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ-QKAIYKANKF  707 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~-~~~v~~~~~~  707 (734)
                      ||++..+...+.+.+.+|..   .+.++.. .....|.+|++ ..+.||+++-. +++|+|+...
T Consensus       334 lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~-d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~~  397 (399)
T COG2133         334 LFVGAHGSWPVLRLRPDGNYKVVLTGFLSG-DLGGRPRDVAVAPDGALLVLTDQGDGRILRVSYA  397 (399)
T ss_pred             EEEEeecceeEEEeccCCCcceEEEEEEec-CCCCcccceEECCCCeEEEeecCCCCeEEEecCC
Confidence            99998777788888888883   3333432 23368999999 67889998766 6799998653

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=97.85  E-value=0.011  Score=60.09  Aligned_cols=212  Identities=15%  Similarity=0.075  Sum_probs=119.2

Q ss_pred             ccceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+..++.... ...+......+..+++.+. +.++++....+.|...++..+... ..+......+..+++++. +.
T Consensus        72 ~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~  148 (289)
T cd00200          72 DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GT  148 (289)
T ss_pred             CCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CC
Confidence            4555555555432 2233333346788888865 456666555778888887633322 222223345678888866 44


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      ++++....+.|.+.++........+......+..+++.+....|+.+..  .+.|...++........+......+..++
T Consensus       149 ~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~  226 (289)
T cd00200         149 FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGHENGVNSVA  226 (289)
T ss_pred             EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecchhhcCCceEEEE
Confidence            4444444678888888643333333334446789999987667777663  46777777754332222222233567888


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCce
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAI  701 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v  701 (734)
                      +++. +.++++....+.|...++........+.  .....+.++++.. +.++++-...+.|
T Consensus       227 ~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         227 FSPD-GYLLASGSEDGTIRVWDLRTGECVQTLS--GHTNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             EcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcc--ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence            8755 5666665557788888876433332222  1123355666643 2344443333443

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=97.81  E-value=2.3e-05  Score=56.15  Aligned_cols=36  Identities=36%  Similarity=0.914  Sum_probs=30.1

Q ss_pred             cccCcCCC-CCcc--cceeccCCceEEecCCCeeeCCCC
Q psy8875         429 DIDECETP-GSCS--QICLNEKGGFKCECVAGYIKDPHH  464 (734)
Q Consensus       429 ~~~eC~~~-~~C~--~~C~n~~g~~~C~C~~gy~~~~~~  464 (734)
                      |||||+.. ..|.  +.|+|+.|+|.|.|++||......
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~~   39 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDDG   39 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTTS
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCCC
Confidence            68999864 5786  699999999999999999965543

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.73  E-value=0.0082  Score=66.81  Aligned_cols=189  Identities=9%  Similarity=0.056  Sum_probs=118.4

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEE--ecCCC--CceEEEEeCCCCCccceeeec
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKA--PIDEG--SERTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~--~l~~g--~~~~~~~~~~~~~p~glAvD~  556 (734)
                      ..|+.+++++.....+........+.+|.+...+|.|+...  ...|+..  ++..+  .....+...........++.+
T Consensus       211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP  290 (428)
T PRK01029        211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP  290 (428)
T ss_pred             ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence            46888899888777776544445567888888888887532  2345554  33322  122233322222334567777


Q ss_pred             cCCcEEEEeCC--CCeEEEEeCCC--CceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEc
Q psy8875         557 IYSHIYWTDAH--KNTIELANFEG--TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       557 ~~~~lY~td~~--~~~I~~~~ldG--~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      .++.|+|+...  ...|+++++++  ...+.+. .........++.|...+|+++... ....|++.++++...+.+...
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~  369 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS  369 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC
Confidence            77878777543  34788888764  2233332 222344567888888888877532 235899999988776655433


Q ss_pred             CCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEc
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~  673 (734)
                       .......++.+.++.||++..  +...|+.++++|...+.+..
T Consensus       370 -~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        370 -PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             -CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence             223456778777788887643  34579999998887776654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.72  E-value=0.0083  Score=66.99  Aligned_cols=185  Identities=12%  Similarity=0.022  Sum_probs=116.1

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.+++.+.....+........+.+|.+..++|+++-...  ..|+.++++++..+ .+.. ........++.+.++.
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~~~~~~~~~~spDg~~  300 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-HPAIDTEPFWGKDGRT  300 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-CCCCcCCeEECCCCCE
Confidence            357777887666555543222334678888888888764333  47999998855433 2322 2223344566666777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      ||++...  ...|+++++++...+.+.... ......++.|..++|+++... ....|++.++++...+.+....  ...
T Consensus       301 i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~--~~~  377 (430)
T PRK00178        301 LYFTSDRGGKPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS--LDE  377 (430)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC--CCC
Confidence            8777543  457999998766554443221 223346778888899888642 2347899999877665554322  223


Q ss_pred             eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEE
Q psy8875         638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~  672 (734)
                      ..++.+.++.|+++..  +..+|+.++++|...+.+.
T Consensus       378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~  414 (430)
T PRK00178        378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP  414 (430)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence            4577777888988864  3457888889887765553

>PRK03629 tolB translocation protein TolB; Provisional

Probab=97.71  E-value=0.0098  Score=66.33  Aligned_cols=186  Identities=6%  Similarity=0.042  Sum_probs=118.7

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.+++.+.....+........+++|.+...+|+++....  ..|+.++++++.. +.+.. ........++.+.++.
T Consensus       223 ~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~-~~lt~-~~~~~~~~~wSPDG~~  300 (429)
T PRK03629        223 SALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQN  300 (429)
T ss_pred             cEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEccC-CCCCcCceEECCCCCE
Confidence            457777777666555543323345678998888899874433  3699999885543 33322 2234456777777777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|+++++++...+.+.. ........++.|...+|+++... ....|+..++++...+.+... . .-.
T Consensus       301 I~f~s~~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~-~~~  377 (429)
T PRK03629        301 LAYTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-F-LDE  377 (429)
T ss_pred             EEEEeCCCCCceEEEEECCCCCeEEeec-CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-C-CCC
Confidence            8666432  3579999998776555542 22334567888887888776532 235788888887765544322 1 122


Q ss_pred             eEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEc
Q psy8875         638 GLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       638 glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~  673 (734)
                      ..++.+.+..|+++...  ...|+.++++|...+.+..
T Consensus       378 ~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~  415 (429)
T PRK03629        378 TPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  415 (429)
T ss_pred             CceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECcc
Confidence            45677778888888643  3358888899988777643

>PRK02889 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.011  Score=66.00  Aligned_cols=185  Identities=10%  Similarity=0.037  Sum_probs=116.5

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+..++.+.....+........+.+|.+..++|+++-..  ...|+.++++++.. +.+.. ........++.+.++.
T Consensus       220 ~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~  297 (427)
T PRK02889        220 PVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRLTQ-SSGIDTEPFFSPDGRS  297 (427)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EECCC-CCCCCcCeEEcCCCCE
Confidence            34888888777666554333345678898888888875332  34689988875443 22222 2222345667767777


Q ss_pred             EEEEeC--CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDA--HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~--~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++..  +...|+++++++...+.+.... ......++.|...+|+++.. +....|+..++++...+.+...  ....
T Consensus       298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g-~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~  374 (427)
T PRK02889        298 IYFTSDRGGAPQIYRMPASGGAAQRVTFTG-SYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDE  374 (427)
T ss_pred             EEEEecCCCCcEEEEEECCCCceEEEecCC-CCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCcc
Confidence            877643  2457888888776554444222 22345678888888887753 2234789988877665555432  2234


Q ss_pred             eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEE
Q psy8875         638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~  672 (734)
                      .+++.+.+..||++-.  +...|+.++++|..++.+.
T Consensus       375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~  411 (427)
T PRK02889        375 SPSFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLS  411 (427)
T ss_pred             CceECCCCCEEEEEEecCCCEEEEEEECCCCceEEee
Confidence            5678888888888753  3346888888888776664

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=97.64  E-value=0.012  Score=65.42  Aligned_cols=184  Identities=12%  Similarity=0.054  Sum_probs=114.2

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+.+++.+.....+........+++|.+..+.|+++...  ...|+..++.++... .+.. ........++.+.++.
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~s~dg~~  291 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN-GPGIDTEPSWSPDGKS  291 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC-CCCCCCCEEECCCCCE
Confidence            45777777765555444332344567888877888876543  346999988754332 2222 1122234456656777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|+++++++...+.+.. .......+++.|...+|+++.... ..+|+..++++...+.+....  ...
T Consensus       292 l~~~s~~~g~~~iy~~d~~~~~~~~l~~-~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~  368 (417)
T TIGR02800       292 IAFTSDRGGSPQIYMMDADGGEVRRLTF-RGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LDE  368 (417)
T ss_pred             EEEEECCCCCceEEEEECCCCCEEEeec-CCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CCC
Confidence            8776543  3479999998776554442 334556778888888899987532 347889888876554443221  233


Q ss_pred             eEEEecCCCeEEEEeCCC--CeEEEEecCCCceEEE
Q psy8875         638 GLTLDLVQRRLYWVDAKL--NEISSCDYNGGNRRLV  671 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~i  671 (734)
                      ..++.+.++.|+++....  ..|+.++.+|...+.+
T Consensus       369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       369 SPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             CceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            456777788888886533  3577777777666544

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1217|consensus

Probab=97.57  E-value=0.00052  Score=77.50  Aligned_cols=209  Identities=28%  Similarity=0.724  Sum_probs=123.6

Q ss_pred             CCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecC-----cCCCCCCCCCCCCCCCCCCC---CCCCCCc
Q psy8875         198 SPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPS-----TWVCDGQNDCPDGVDEKKCH---ETCRSDE  269 (734)
Q Consensus       198 ~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~-----~~~Cdg~~dC~dg~de~~C~---~~C~~~~  269 (734)
                      ...+.|.|+.||.+..+....      .|.......+..+.|+..     .++|.    |..|+....|.   ..|....
T Consensus       107 ~~~~~c~c~~g~~~~~~~~~~------~C~~~~~~~~~~~~c~~~~~~~~~~~c~----C~~g~~~~~~~~~~~~C~~~~  176 (487)
T KOG1217|consen  107 VGSYECTCPPGYQGTPCEGEC------ECVTGPGVCCIDGSCSNGPGSVGPFRCS----CTEGYEGEPCETDLDECIQYS  176 (487)
T ss_pred             CCCceeeCCCccccCcCCcce------eecCCCCCeeCchhhcCCCCCCCceeee----eCCCcccccccccccccccCC
Confidence            367889999999998877631      233111133456677653     55666    99999998886   3677666


Q ss_pred             eecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccc----------ccccc-CCCCCCCCCC
Q psy8875         270 FTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPD----------KWVCD-GDTVEKDSTC  335 (734)
Q Consensus       270 ~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~----------~~~Cd-g~~dC~d~~C  335 (734)
                      ..|.++ .|.+.  .+.|    .|..++-...|...         .+.+.|+..          ...|. ...+|..+  
T Consensus       177 ~~c~~~~~C~~~~~~~~C----~c~~~~~~~~~~~~---------~~~~~c~~~~~~~~~~g~~~~~c~~~~~~~~~~--  241 (487)
T KOG1217|consen  177 SPCQNGGTCVNTGGSYLC----SCPPGYTGSTCETT---------GNGGTCVDSVACSCPPGARGPECEVSIVECASG--  241 (487)
T ss_pred             CCcCCCcccccCCCCeeE----eCCCCccCCcCcCC---------CCCceEecceeccCCCCCCCCCcccccccccCC--
Confidence            668876 78765  4667    68888877777632         111222221          00110 00111000  


Q ss_pred             CCCCCCC-CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCC-CCc-cccccccCCCCCc--CccccCCCcc
Q psy8875         336 PNATPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDP-TKC-GVDECAKDNGGCL--HKCVDLPVGY  410 (734)
Q Consensus       336 ~~~~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~-~~C-~~~eC~~~~~~C~--~~C~~~~~~~  410 (734)
                       + ..|. ..+.|.                     |    .|+.|+.... ..| ++++|..... |.  ..|++.++.|
T Consensus       242 -~-~~c~~~~~~~~---------------------C----~~~~g~~~~~~~~~~~~~~C~~~~~-c~~~~~C~~~~~~~  293 (487)
T KOG1217|consen  242 -D-GTCVNTVGSYT---------------------C----RCPEGYTGDACVTCVDVDSCALIAS-CPNGGTCVNVPGSY  293 (487)
T ss_pred             -C-CcccccCCcee---------------------e----eCCCCccccccceeeeccccCCCCc-cCCCCeeecCCCcc
Confidence             0 1110 112222                     3    5566665554 234 7888887643 54  5999999999


Q ss_pred             eeecCCCcEecCCCCccccccCcC---CCCCccc--ce--eccCCceEEecCCCeee
Q psy8875         411 MCECNEGYKLSSNRHTCIDIDECE---TPGSCSQ--IC--LNEKGGFKCECVAGYIK  460 (734)
Q Consensus       411 ~C~C~~G~~l~~~~~~C~~~~eC~---~~~~C~~--~C--~n~~g~~~C~C~~gy~~  460 (734)
                      .|.|++||..... ..|.+..+|.   ....|..  .|  .+..+.+.|.|..+|.+
T Consensus       294 ~C~C~~g~~g~~~-~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g  349 (487)
T KOG1217|consen  294 RCTCPPGFTGRLC-TECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTG  349 (487)
T ss_pred             eeeCCCCCCCCCC-ccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCC
Confidence            9999999976544 4466667774   2333543  44  44455788999988544

>KOG1446|consensus

Probab=97.55  E-value=0.11  Score=52.88  Aligned_cols=195  Identities=15%  Similarity=0.132  Sum_probs=118.7

Q ss_pred             EEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEE
Q psy8875         517 IFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLA  596 (734)
Q Consensus       517 lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~ia  596 (734)
                      ||=+...+..|+-.++.. +.....+.+--..+.+|++-|.. ..|.+-+..+.|+..++.-.....++  .+..+--.|
T Consensus        72 i~sStk~d~tIryLsl~d-NkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l--~~~~~pi~A  147 (311)
T KOG1446|consen   72 IHSSTKEDDTIRYLSLHD-NKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLL--NLSGRPIAA  147 (311)
T ss_pred             EEccCCCCCceEEEEeec-CceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEE--ecCCCccee
Confidence            333333344566666552 23222333334456788888776 78888888889999999866666665  344566789


Q ss_pred             EeCCCCeEEEEecCCCceEEEecc---CCCceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEE
Q psy8875         597 LNPIDGWMYWSDWGQNAKIERAGM---DGSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRL  670 (734)
Q Consensus       597 vD~~~g~LYwtd~~~~~~I~~~~l---dG~~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~  670 (734)
                      .|| .|.||.+-.+. ..|...++   |..-.+++..  .....-+.|.+.+.++.|.++.. .+.|..++ ++|.-...
T Consensus       148 fDp-~GLifA~~~~~-~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~t  224 (311)
T KOG1446|consen  148 FDP-EGLIFALANGS-ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKST  224 (311)
T ss_pred             ECC-CCcEEEEecCC-CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeee
Confidence            998 47777776544 26655544   3333333322  22334467888877777777664 35566666 77875555


Q ss_pred             EEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875         671 VLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      +-..+....-|.+-++ -++....+-...++|...+..+|..+.++...
T Consensus       225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            5433333334544344 35555566666688888888888888777654

>KOG4499|consensus

Probab=97.52  E-value=0.003  Score=61.56  Aligned_cols=93  Identities=15%  Similarity=0.231  Sum_probs=68.4

Q ss_pred             EEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcE--EEEecCCCCc--eEEEEeC------CCCCccceeee
Q psy8875         486 RKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKI--YKAPIDEGSE--RTVVIEE------DKTIADGLAVD  555 (734)
Q Consensus       486 ~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I--~~~~l~~g~~--~~~~~~~------~~~~p~glAvD  555 (734)
                      .+..+.++.+..+-..+.-+.||+||....++|++|..+-.|  +..+..+|..  +.+++.-      ....|.|++||
T Consensus       141 Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID  220 (310)
T KOG4499|consen  141 LYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID  220 (310)
T ss_pred             EEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc
Confidence            344455666666666677788999999999999999998888  4444554432  4444321      23468999999


Q ss_pred             ccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         556 WIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       556 ~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                       ..|+||++-+..++|+++++...
T Consensus       221 -~eG~L~Va~~ng~~V~~~dp~tG  243 (310)
T KOG4499|consen  221 -TEGNLYVATFNGGTVQKVDPTTG  243 (310)
T ss_pred             -cCCcEEEEEecCcEEEEECCCCC
Confidence             58999999999999999988543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.43  E-value=0.02  Score=61.08  Aligned_cols=220  Identities=17%  Similarity=0.189  Sum_probs=114.8

Q ss_pred             cCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeecc----------------CCeE
Q psy8875         454 CVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFR----------------TGMI  517 (734)
Q Consensus       454 C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~----------------~~~l  517 (734)
                      |.++|.+.++-..        ..++|+...+++..++.......|..++.....--+.+.                +.-|
T Consensus        38 cM~n~~l~PDI~G--------D~IiFt~~DdlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDl  109 (668)
T COG4946          38 CMKNYYLNPDIYG--------DRIIFTCCDDLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADL  109 (668)
T ss_pred             hhhhhhcCCcccC--------cEEEEEechHHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccE
Confidence            4555666554221        246666667777777665555555444332222222222                3345


Q ss_pred             EEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-----CeEEEEeCCCCceEEEEcCCCCCc
Q psy8875         518 FWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-----NTIELANFEGTMRKVLVRSYLDEP  592 (734)
Q Consensus       518 yw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-----~~I~~~~ldG~~~~~l~~~~l~~P  592 (734)
                      |+++...+.+.|+..- |.        .+..+.|  .++.++.|..||..+     ..+++++.||.....|   ++...
T Consensus       110 y~v~~e~Ge~kRiTyf-Gr--------~fT~VaG--~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L---nlGpa  175 (668)
T COG4946         110 YVVPSEDGEAKRITYF-GR--------RFTRVAG--WIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPL---NLGPA  175 (668)
T ss_pred             EEEeCCCCcEEEEEEe-cc--------ccceeec--cCCCCCEEEEeccCCCcccceeeeEEccCCceeeec---cCCce
Confidence            5555555555544433 22        2222222  223345566666653     2456777787644333   23333


Q ss_pred             eeEEEeCCCCeEEEE----------ec--CCCceEEEeccCCCceEEEEE--cCCCCceeEEEecCCCeEEEEe--CCCC
Q psy8875         593 RSLALNPIDGWMYWS----------DW--GQNAKIERAGMDGSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVD--AKLN  656 (734)
Q Consensus       593 ~~iavD~~~g~LYwt----------d~--~~~~~I~~~~ldG~~~~~lv~--~~l~~P~glavD~~~~~LYw~D--~~~~  656 (734)
                      ..|.+  ..|.++..          ..  |..++||.....|..-+.++.  ..+.+|  +.|   .+|||+..  .+.+
T Consensus       176 thiv~--~dg~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~P--mIV---~~RvYFlsD~eG~G  248 (668)
T COG4946         176 THIVI--KDGIIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSP--MIV---GERVYFLSDHEGVG  248 (668)
T ss_pred             eeEEE--eCCEEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCc--eEE---cceEEEEecccCcc
Confidence            34444  34555443          32  345788888777755555554  456666  333   88999885  3567


Q ss_pred             eEEEEecCCCceEEEEcCCCCCCCCeEE-------EE-ECCEEEEEeCCCCceEEE
Q psy8875         657 EISSCDYNGGNRRLVLYSPQTLSHPFSI-------ST-FEDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl-------~v-~~~~lywtd~~~~~v~~~  704 (734)
                      .|++++++|.+.+.-....  -..|.-+       .+ ..|.||.-|..+.+|-++
T Consensus       249 nlYSvdldGkDlrrHTnFt--dYY~R~~nsDGkrIvFq~~GdIylydP~td~lekl  302 (668)
T COG4946         249 NLYSVDLDGKDLRRHTNFT--DYYPRNANSDGKRIVFQNAGDIYLYDPETDSLEKL  302 (668)
T ss_pred             ceEEeccCCchhhhcCCch--hccccccCCCCcEEEEecCCcEEEeCCCcCcceee
Confidence            9999999999766543211  1233333       33 345556556555555544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.43  E-value=0.049  Score=55.30  Aligned_cols=173  Identities=14%  Similarity=0.150  Sum_probs=108.1

Q ss_pred             cceEEeecCCCceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+++++........  ++..--..||++.  .++||...+..+..++.+.+. -....-+. -.....||+-|  +..
T Consensus        68 S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t-l~~~~~~~-y~~EGWGLt~d--g~~  141 (264)
T PF05096_consen   68 SSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT-LKKIGTFP-YPGEGWGLTSD--GKR  141 (264)
T ss_dssp             EEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTT-TEEEEEEE--SSS--EEEEC--SSC
T ss_pred             EEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEcccc-ceEEEEEe-cCCcceEEEcC--CCE
Confidence            4688888886654332  2334456788877  789999999999999998873 22211122 23467799976  677


Q ss_pred             EEEEeCCCCeEEEEeCCCC-ceEEE-Ec-C--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC--
Q psy8875         561 IYWTDAHKNTIELANFEGT-MRKVL-VR-S--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD--  632 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~-~~~~l-~~-~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~--  632 (734)
                      ||.+|. +.+|+..+...- ..+.+ +. .  .+...+-|..  .+|+||---|. ...|.++++.-....-.+. +.  
T Consensus       142 Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW~-td~I~~Idp~tG~V~~~iDls~L~  217 (264)
T PF05096_consen  142 LIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVWQ-TDRIVRIDPETGKVVGWIDLSGLR  217 (264)
T ss_dssp             EEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEETT-SSEEEEEETTT-BEEEEEE-HHHH
T ss_pred             EEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeCC-CCeEEEEeCCCCeEEEEEEhhHhh
Confidence            888876 688888887542 22222 21 1  1233344544  58899888886 4899999987655544442 10  


Q ss_pred             ------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         633 ------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       633 ------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                                  ..--||||.|+.+++||++--.-.+++.+.+..
T Consensus       218 ~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~e  262 (264)
T PF05096_consen  218 PEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLVE  262 (264)
T ss_dssp             HHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEEE
T ss_pred             hcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEEe
Confidence                        234699999999999999987777888877643

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.083  Score=53.52  Aligned_cols=219  Identities=12%  Similarity=0.173  Sum_probs=118.6

Q ss_pred             ceeeeeec-cceEEeecCCCceEEEecCC---cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         475 ASLLFARK-HDIRKISLDHHEMTAIVNST---KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~~-~~I~~i~l~~~~~~~l~~~~---~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      .++++++. ..|+.+++...+...+...+   ....++++  ..+.+|++|+..+. ..+++...+..++.  .....|.
T Consensus        97 ~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgf-LivdvsdpssP~la--grya~~~  171 (370)
T COG5276          97 EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGF-LIVDVSDPSSPQLA--GRYALPG  171 (370)
T ss_pred             cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcE-EEEECCCCCCceee--eeeccCC
Confidence            35555553 45666666544433333322   22344444  48899999986553 33454433333333  2233333


Q ss_pred             ----ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         551 ----GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       551 ----glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                          .+||  .++.-|++.+. +-+.+.+.......+++..--..|..-.+-+...+.|.++.++  .+.-.+.++....
T Consensus       172 ~d~~~v~I--SGn~AYvA~~d-~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp  246 (370)
T COG5276         172 GDTHDVAI--SGNYAYVAWRD-GGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSP  246 (370)
T ss_pred             CCceeEEE--ecCeEEEEEeC-CCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCc
Confidence                3555  36677887765 3455556655555555543333344444444667888888654  3444555554433


Q ss_pred             EEE-EcCCCCceeE-EEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC-CCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875         627 MVI-VSDIKWPNGL-TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP-QTLSHPFSISTFEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       627 ~lv-~~~l~~P~gl-avD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~-~~~~~P~gl~v~~~~lywtd~~~~~v~~  703 (734)
                      +++ .-+...|.++ ++-..+++.|++|...+ +..++..-.....+..+- ....+..+|..+++++|++|.+++.|.-
T Consensus       247 ~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn~g~vV~  325 (370)
T COG5276         247 TVFGSYETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKNTGAVVD  325 (370)
T ss_pred             eEeeccccCCcccccceecccceeeeeccccC-ceeEeccCCCCCchhccccCCCccccceEEecCeeEeccCCceEEEe
Confidence            333 3344556555 22336899999996543 333333322222222211 1123567899999999999999887764


Q ss_pred             E
Q psy8875         704 A  704 (734)
Q Consensus       704 ~  704 (734)
                      +
T Consensus       326 ~  326 (370)
T COG5276         326 A  326 (370)
T ss_pred             C
Confidence            4

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.39  E-value=0.042  Score=58.93  Aligned_cols=190  Identities=21%  Similarity=0.261  Sum_probs=100.9

Q ss_pred             cceeeeee--ccceEEeecCCCceEEEecCCcceEEEee--ec--cCCe---EEEEEeCC--Cc--EEEEecCCCCceEE
Q psy8875         474 HASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDF--VF--RTGM---IFWSDISE--KK--IYKAPIDEGSERTV  540 (734)
Q Consensus       474 ~~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~--d~--~~~~---lyw~d~~~--~~--I~~~~l~~g~~~~~  540 (734)
                      ..++++..  ...++..+|+|.....+..  .++..||+  +.  ..+.   +..++...  .+  ||+++.+.+....+
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v  144 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV  144 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred             ccceEEEEeCCCCEEEEcCCCcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence            34555543  3468888999988776633  23433333  21  1111   23344322  23  45555432221111


Q ss_pred             -----EEeCCCCCccceeee--ccCCcEEEEe-CCCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEE
Q psy8875         541 -----VIEEDKTIADGLAVD--WIYSHIYWTD-AHKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYW  606 (734)
Q Consensus       541 -----~~~~~~~~p~glAvD--~~~~~lY~td-~~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYw  606 (734)
                           .+...+..|.||++-  +.++.+|..- ...+.+....|    +|.....++.  ....+|.|+++|...|+||+
T Consensus       145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred             CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Confidence                 122355678899984  4556666543 23466666554    3332222322  22358999999999999999


Q ss_pred             EecCCCceEEEeccC---CCceEEEEEc---CC-CCceeEEEecC---CCeEEEEeCCCCeEEEEecCCCc
Q psy8875         607 SDWGQNAKIERAGMD---GSHRNMVIVS---DI-KWPNGLTLDLV---QRRLYWVDAKLNEISSCDYNGGN  667 (734)
Q Consensus       607 td~~~~~~I~~~~ld---G~~~~~lv~~---~l-~~P~glavD~~---~~~LYw~D~~~~~I~~~~~dG~~  667 (734)
                      .+.  ...||+...+   +..++.+...   .+ .-..||+|=+.   .++|.+++.+.+....++..+.+
T Consensus       225 gEE--~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  225 GEE--DVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             EET--TTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             ecC--ccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            994  5789998886   3334433221   12 45679999432   45788888888888888877753

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4289|consensus

Probab=97.38  E-value=0.0017  Score=76.64  Aligned_cols=78  Identities=33%  Similarity=0.750  Sum_probs=60.0

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccc---cCcCCCCCccc--ceeccC-C
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI---DECETPGSCSQ--ICLNEK-G  448 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~---~eC~~~~~C~~--~C~n~~-g  448 (734)
                      .||+||+++.+.-++++|-..+++-...|....++|+|.|.+||    -|.+|+-.   ..|. ++.|..  +|+|.. |
T Consensus      1225 rCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~----tGehCEvs~~agrCv-pGvC~nggtC~~~~ng 1299 (2531)
T KOG4289|consen 1225 RCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGF----TGEHCEVSARAGRCV-PGVCKNGGTCVNLLNG 1299 (2531)
T ss_pred             eCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCc----cccceeeecccCccc-cceecCCCEEeecCCC
Confidence            88999988854447899987665556689999999999999999    67778532   2333 566743  888875 7


Q ss_pred             ceEEecCCC
Q psy8875         449 GFKCECVAG  457 (734)
Q Consensus       449 ~~~C~C~~g  457 (734)
                      +|.|.|+.|
T Consensus      1300 gf~c~Cp~g 1308 (2531)
T KOG4289|consen 1300 GFCCHCPYG 1308 (2531)
T ss_pred             ceeccCCCc
Confidence            899999998

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.25  E-value=0.017  Score=65.27  Aligned_cols=190  Identities=12%  Similarity=0.058  Sum_probs=114.8

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee--ccCCcEE-----------------EEeCCCCeEEEE
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD--WIYSHIY-----------------WTDAHKNTIELA  574 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD--~~~~~lY-----------------~td~~~~~I~~~  574 (734)
                      .+.||+-|..+.+|-|++++.-...+++.-.+.....|+++.  +.++.+|                 .+....+.+.++
T Consensus       141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI  220 (635)
T PRK02888        141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV  220 (635)
T ss_pred             eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence            678888888899999999984332333333355555666665  3333333                 232223445555


Q ss_pred             eCCCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCC-------------CceEEEecc--------CCC------ce
Q psy8875         575 NFEGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-------------NAKIERAGM--------DGS------HR  625 (734)
Q Consensus       575 ~ldG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-------------~~~I~~~~l--------dG~------~~  625 (734)
                      +.+....  ++++   ..+|+.+++++..+++|++....             ...+...+.        +|.      ++
T Consensus       221 D~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~  297 (635)
T PRK02888        221 DAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSK  297 (635)
T ss_pred             ECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCE
Confidence            5443211  1222   23899999999988999995211             001111111        121      11


Q ss_pred             EEEEE---------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc---------eEEEEcCCCCCCCC
Q psy8875         626 NMVIV---------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN---------RRLVLYSPQTLSHP  681 (734)
Q Consensus       626 ~~lv~---------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~---------~~~i~~~~~~~~~P  681 (734)
                      ..++.               .--..|.||++++.+.+||.+....+.|..+++....         +.+++........|
T Consensus       298 V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP  377 (635)
T PRK02888        298 VPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP  377 (635)
T ss_pred             EEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence            11111               1125699999999999999999989999998876422         34444444445578


Q ss_pred             eEEEEEC-CEEEEEeCCCCceEEEec
Q psy8875         682 FSISTFE-DWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       682 ~gl~v~~-~~lywtd~~~~~v~~~~~  706 (734)
                      .-.++++ ++.|.|-.-...|.+.|.
T Consensus       378 LHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        378 LHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             ceEEECCCCCEEEeEeecceeEEEeh
Confidence            8888854 589988877777777764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.24  E-value=0.049  Score=55.30  Aligned_cols=159  Identities=15%  Similarity=0.096  Sum_probs=99.6

Q ss_pred             cceeeeccCCcEEEEeCCC--CeEEEEeCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         550 DGLAVDWIYSHIYWTDAHK--NTIELANFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~--~~I~~~~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      .||.++ ..+.||-+....  .+|.+.++..... ...--....--.||++  .+++||...|.+ +...+.+.+.-...
T Consensus        48 QGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~-~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   48 QGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKE-GTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSS-SEEEEEETTTTEEE
T ss_pred             ccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecC-CeEEEEccccceEE
Confidence            477774 357888886653  4788888875443 2222233334578998  478999999964 67788777643222


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC-ceEE--EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG-NRRL--VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~--i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~  703 (734)
                      .-+.- ....-||+-|  ++.||.+|. +.+|+..+...- ..+.  |......+..-.-|.+.+|.||.--|.+..|.+
T Consensus       124 ~~~~y-~~EGWGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~  199 (264)
T PF05096_consen  124 GTFPY-PGEGWGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVR  199 (264)
T ss_dssp             EEEE--SSS--EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEE
T ss_pred             EEEec-CCcceEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEE
Confidence            11111 1345689965  788998885 678998886532 2222  222222233445678889999999999999999


Q ss_pred             EeccCCCceEEEe
Q psy8875         704 ANKFTGDNLTAIT  716 (734)
Q Consensus       704 ~~~~~G~~~~~l~  716 (734)
                      |++.+|+.+..+-
T Consensus       200 Idp~tG~V~~~iD  212 (264)
T PF05096_consen  200 IDPETGKVVGWID  212 (264)
T ss_dssp             EETTT-BEEEEEE
T ss_pred             EeCCCCeEEEEEE
Confidence            9999999988874

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.20  E-value=0.31  Score=49.18  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=104.3

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe-CCCCceEEE-EcC----
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEGTMRKVL-VRS----  587 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~-ldG~~~~~l-~~~----  587 (734)
                      .++||..+ ..+.|+.+++..|...-. ..  +..+...+.-...+.||+.... ++|+..+ .+|+..-.+ ...    
T Consensus        36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~-~~--~~~~~~~~~~~~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   36 GGRVYVAS-GDGNLYALDAKTGKVLWR-FD--LPGPISGAPVVDGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTSEEEEE-EE--CSSCGGSGEEEETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEEEE-ee--ccccccceeeecccccccccce-eeeEecccCCcceeeeecccccccc
Confidence            77888874 677888888765543211 11  1222211112246888888753 4888888 566665543 211    


Q ss_pred             CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCc-------------eeEEEecCCCeEEEEeC
Q psy8875         588 YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWP-------------NGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       588 ~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P-------------~glavD~~~~~LYw~D~  653 (734)
                      .+..+...+++  .+.+|....  .+.|...++. |..+...   .+..|             ..+.+  .+++||++..
T Consensus       111 ~~~~~~~~~~~--~~~~~~~~~--~g~l~~~d~~tG~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~  181 (238)
T PF13360_consen  111 GVRSSSSPAVD--GDRLYVGTS--SGKLVALDPKTGKLLWKY---PVGEPRGSSPISSFSDINGSPVI--SDGRVYVSSG  181 (238)
T ss_dssp             STB--SEEEEE--TTEEEEEET--CSEEEEEETTTTEEEEEE---ESSTT-SS--EEEETTEEEEEEC--CTTEEEEECC
T ss_pred             ccccccCceEe--cCEEEEEec--cCcEEEEecCCCcEEEEe---ecCCCCCCcceeeecccccceEE--ECCEEEEEcC
Confidence            12234455554  677777773  4677777754 4332222   11221             22333  3669999886


Q ss_pred             CCCeEEEEecCCCceEEEEcCCCCCCCCeE-EEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875         654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFS-ISTFEDWLYWSDWQQKAIYKANKFTGDNLT  713 (734)
Q Consensus       654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~g-l~v~~~~lywtd~~~~~v~~~~~~~G~~~~  713 (734)
                      ... +..+++....+. . .. . +..+.+ +...++.||+++ ..+.|+.+++.+|+.+-
T Consensus       182 ~g~-~~~~d~~tg~~~-w-~~-~-~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  182 DGR-VVAVDLATGEKL-W-SK-P-ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TSS-EEEEETTTTEEE-E-EE-C-SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEEEE
T ss_pred             CCe-EEEEECCCCCEE-E-Ee-c-CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCEEe
Confidence            544 555576655543 2 22 2 445555 566899999999 67899999999998653

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.18  E-value=0.069  Score=59.60  Aligned_cols=178  Identities=7%  Similarity=0.015  Sum_probs=108.7

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+..++.+.....+........+++|.+...+|+++....+  .|+.++++++.. ..+.. .......+++.+.++.|
T Consensus       229 ~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~-~~~~~~~~~wSpDG~~i  306 (429)
T PRK01742        229 QLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS-GAGNNTEPSWSPDGQSI  306 (429)
T ss_pred             EEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc-CCCCcCCEEECCCCCEE
Confidence            477778776655544332223446788888888888643333  588888875433 33322 33345567787777778


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL  639 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gl  639 (734)
                      +++...  ..+|+++++++...+.+ ....   ..+++.|...+|+++..   ..|.+.++.+...+.+. ... .-..+
T Consensus       307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~SpDG~~ia~~~~---~~i~~~Dl~~g~~~~lt-~~~-~~~~~  377 (429)
T PRK01742        307 LFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQISADGKTLVMING---DNVVKQDLTSGSTEVLS-STF-LDESP  377 (429)
T ss_pred             EEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccCCCCCCEEEEEcC---CCEEEEECCCCCeEEec-CCC-CCCCc
Confidence            877543  45788888877655444 2221   34567887788887752   45777777655444332 222 22456


Q ss_pred             EEecCCCeEEEEeCC--CCeEEEEecCCCceEEEE
Q psy8875         640 TLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       640 avD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~  672 (734)
                      ++.+.+..|+++...  ...++.++.+|...+.+.
T Consensus       378 ~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        378 SISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             eECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence            788778888887542  223455567888777664

>KOG1446|consensus

Probab=97.11  E-value=0.26  Score=50.37  Aligned_cols=205  Identities=10%  Similarity=0.043  Sum_probs=118.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+.+|+|+.....| .+......|+..+...|.....+.... ..+. ..-++..+..||-+......|+-.++....
T Consensus        14 ~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            4577889998654444 444445567777776666555554321 1111 112233444566555556788888886665


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ....+.+.-....+|.+.|.. -.|.+..- ...|..-++.-.+-+.++.  +..+.-.|+| .+|.|+.+-.+...|..
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~-D~tvrLWDlR~~~cqg~l~--~~~~pi~AfD-p~GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKD-DTFLSSSL-DKTVRLWDLRVKKCQGLLN--LSGRPIAAFD-PEGLIFALANGSELIKL  166 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCC-CeEEeccc-CCeEEeeEecCCCCceEEe--cCCCcceeEC-CCCcEEEEecCCCeEEE
Confidence            555556777888999999976 77877632 3466666665444444432  3445568888 56667666666667877


Q ss_pred             EecC---CC-ceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         661 CDYN---GG-NRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       661 ~~~d---G~-~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +++.   .. .....+.. .....-..|.+  .+..|.++... +.++.++.++|.....+
T Consensus       167 yD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~-s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  167 YDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNA-SFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             EEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCC-CcEEEEEccCCcEeeeE
Confidence            7743   22 23222221 12223345555  34555555543 55677777777755444

>KOG4289|consensus

Probab=97.09  E-value=0.00043  Score=81.46  Aligned_cols=85  Identities=27%  Similarity=0.660  Sum_probs=72.6

Q ss_pred             CCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecC--cCCCCCCCCCCCCCCCCCCCC-----CCCCCcee
Q psy8875         199 PKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPS--TWVCDGQNDCPDGVDEKKCHE-----TCRSDEFT  271 (734)
Q Consensus       199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~--~~~Cdg~~dC~dg~de~~C~~-----~C~~~~~~  271 (734)
                      +...|.||+||++..|+...+.|.+.+|.       ++|+|...  .+.|.    |.+|+.+.+|+.     .|.++.  
T Consensus      1220 nglrCrCPpGFTgd~CeTeiDlCYs~pC~-------nng~C~srEggYtCe----Crpg~tGehCEvs~~agrCvpGv-- 1286 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCETEIDLCYSGPCG-------NNGRCRSREGGYTCE----CRPGFTGEHCEVSARAGRCVPGV-- 1286 (2531)
T ss_pred             CceeEeCCCCCCcccccchhHhhhcCCCC-------CCCceEEecCceeEE----ecCCccccceeeecccCccccce--
Confidence            46789999999999999999999999999       47888765  78888    999999999972     688875  


Q ss_pred             cCCC-CeecC---CcccCCCCCCCCCCCC-CCCC
Q psy8875         272 CANG-NCIQR---IWLCDGDDDCKDGSDE-KSCQ  300 (734)
Q Consensus       272 C~~g-~Ci~~---~~~Cdg~~dC~dgsDe-~~C~  300 (734)
                      |.|| +|++.   .+.|    +|+.|.+| ..|+
T Consensus      1287 C~nggtC~~~~nggf~c----~Cp~ge~e~prC~ 1316 (2531)
T KOG4289|consen 1287 CKNGGTCVNLLNGGFCC----HCPYGEFEDPRCE 1316 (2531)
T ss_pred             ecCCCEEeecCCCceec----cCCCcccCCCceE
Confidence            9998 99765   7788    89999887 5686

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.04  E-value=0.13  Score=54.12  Aligned_cols=198  Identities=14%  Similarity=0.154  Sum_probs=114.9

Q ss_pred             eeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEEEE
Q psy8875         509 DFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKVLV  585 (734)
Q Consensus       509 ~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~l~  585 (734)
                      ++....+.+|+.+... ..|-.+++..+..   +.  .+..|.-.-|-|....=|.+-=+.+++..+.|+  |+..+...
T Consensus       101 ~ls~dgk~~~V~N~TPa~SVtVVDl~~~kv---v~--ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t  175 (342)
T PF06433_consen  101 ALSADGKFLYVQNFTPATSVTVVDLAAKKV---VG--EIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKST  175 (342)
T ss_dssp             EE-TTSSEEEEEEESSSEEEEEEETTTTEE---EE--EEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred             EEccCCcEEEEEccCCCCeEEEEECCCCce---ee--eecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence            4444588999998764 5688888874322   21  233444333333333335555556778777775  44332111


Q ss_pred             --cCCCCCce--eEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC--------CC-ce---eEEEecCCCeEE
Q psy8875         586 --RSYLDEPR--SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI--------KW-PN---GLTLDLVQRRLY  649 (734)
Q Consensus       586 --~~~l~~P~--~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l--------~~-P~---glavD~~~~~LY  649 (734)
                        -.....|.  .=+.....+.+||...  .+.|+.+++.|...+..-.-.+        .| |-   -+|++...++||
T Consensus       176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  176 KVFDPDDDPLFEHPAYSRDGGRLYFVSY--EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EESSTTTS-B-S--EEETTTTEEEEEBT--TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             cccCCCCcccccccceECCCCeEEEEec--CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence              01112221  1123345678888774  5899999999887654332111        11 32   388998999999


Q ss_pred             EEeC----CC-----CeEEEEecCCCceEEEEcCCCCCCCCe-EEEEE---CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         650 WVDA----KL-----NEISSCDYNGGNRRLVLYSPQTLSHPF-SISTF---EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       650 w~D~----~~-----~~I~~~~~dG~~~~~i~~~~~~~~~P~-gl~v~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.-.    ++     ..||.+++....|..-+.    +.+|. +|++.   .-.||-++.+.+.|...+..+|+.+..+.
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEe----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            8731    11     279998887666554442    34444 78884   34788888888899999999999888876


Q ss_pred             c
Q psy8875         717 G  717 (734)
Q Consensus       717 ~  717 (734)
                      .
T Consensus       330 ~  330 (342)
T PF06433_consen  330 Q  330 (342)
T ss_dssp             -
T ss_pred             c
Confidence            4

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.03  E-value=0.0015  Score=42.06  Aligned_cols=28  Identities=18%  Similarity=0.504  Sum_probs=25.0

Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         633 IKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       633 l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      +..|.||++| .++.||++|.++++|.++
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            4679999999 899999999999999863

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=96.98  E-value=0.078  Score=56.91  Aligned_cols=120  Identities=22%  Similarity=0.293  Sum_probs=72.5

Q ss_pred             CCCCCceeEEE--eCCCCeEEEEecCCCceEEEecc--CCC--ceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         587 SYLDEPRSLAL--NPIDGWMYWSDWGQNAKIERAGM--DGS--HRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       587 ~~l~~P~~iav--D~~~g~LYwtd~~~~~~I~~~~l--dG~--~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      ..+..|.|+++  ++..|.+|..-.++.+.++...|  ++.  ..-.++.  ..-..|.|+++|-..++||+++-. ..|
T Consensus       153 ~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~GI  231 (381)
T PF02333_consen  153 TDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VGI  231 (381)
T ss_dssp             -SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TEE
T ss_pred             cccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cEE
Confidence            34567889998  45677777665445566655544  333  2223332  123578999999999999999965 589


Q ss_pred             EEEecC---CCceEEEEcC--CCCCCCCeEEEEE-----CCEEEEEeCCCCceEEEecc
Q psy8875         659 SSCDYN---GGNRRLVLYS--PQTLSHPFSISTF-----EDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       659 ~~~~~d---G~~~~~i~~~--~~~~~~P~gl~v~-----~~~lywtd~~~~~v~~~~~~  707 (734)
                      |+++.+   +..++.+...  .......-||+++     .++|.+++-+.++....++.
T Consensus       232 W~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~  290 (381)
T PF02333_consen  232 WRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDRE  290 (381)
T ss_dssp             EEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESS
T ss_pred             EEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecC
Confidence            999976   3344444321  2233456799984     36899999888876666543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.17  Score=51.34  Aligned_cols=181  Identities=17%  Similarity=0.177  Sum_probs=100.8

Q ss_pred             eeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC
Q psy8875         509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS  587 (734)
Q Consensus       509 ~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~  587 (734)
                      ++-..++++|++|+..+ |+.+++......+.+-.-+. ....+++|  .++..|++|+..+ ....++......+|. +
T Consensus        91 Dv~vse~yvyvad~ssG-L~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddg-fLivdvsdpssP~la-g  165 (370)
T COG5276          91 DVRVSEEYVYVADWSSG-LRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDG-FLIVDVSDPSSPQLA-G  165 (370)
T ss_pred             eeEecccEEEEEcCCCc-eEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCc-EEEEECCCCCCceee-e
Confidence            33345889999997665 45555543333322211111 12233333  4778999998544 344555443333333 2


Q ss_pred             CCCCc----eeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         588 YLDEP----RSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       588 ~l~~P----~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      ....|    ..++|  ..++-|.+.++.  .+...+.......+++..--..|..-++-+..+|.|.++...+ +.-++.
T Consensus       166 rya~~~~d~~~v~I--SGn~AYvA~~d~--GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~  240 (370)
T COG5276         166 RYALPGGDTHDVAI--SGNYAYVAWRDG--GLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDV  240 (370)
T ss_pred             eeccCCCCceeEEE--ecCeEEEEEeCC--CeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEec
Confidence            23333    34666  466778777643  3444454444444454432222444445557899999987654 555667


Q ss_pred             CCCceEEEEcCCCCCCCCeEE---EEECCEEEEEeCCCCc
Q psy8875         664 NGGNRRLVLYSPQTLSHPFSI---STFEDWLYWSDWQQKA  700 (734)
Q Consensus       664 dG~~~~~i~~~~~~~~~P~gl---~v~~~~lywtd~~~~~  700 (734)
                      ++....+++.. -....|.++   .+.+++.|++|...+.
T Consensus       241 s~~ssp~~~gs-yet~~p~~~s~v~Vs~~~~Yvadga~gl  279 (370)
T COG5276         241 SGPSSPTVFGS-YETSNPVSISTVPVSGEYAYVADGAKGL  279 (370)
T ss_pred             CCCCCceEeec-cccCCcccccceecccceeeeeccccCc
Confidence            77654444432 234556665   7789999999987553

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=96.85  E-value=0.069  Score=57.65  Aligned_cols=159  Identities=14%  Similarity=0.133  Sum_probs=96.5

Q ss_pred             ceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCC------CceEEEEeCCCCCccceeeeccCCcEEEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEG------SERTVVIEEDKTIADGLAVDWIYSHIYWT  564 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g------~~~~~~~~~~~~~p~glAvD~~~~~lY~t  564 (734)
                      ....|+|++.. +||++-...             ++|.++..++.      .....+...++.+|.|+++++.++.||.+
T Consensus       178 ~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~  256 (399)
T COG2133         178 FGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTT  256 (399)
T ss_pred             CcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEE
Confidence            44678888855 999974332             34555443311      11223444588999999999999999999


Q ss_pred             eCCCCeE------EEE---------------eCCCCc------eEEE-----EcCCCCCceeEEEeCC------CCeEEE
Q psy8875         565 DAHKNTI------ELA---------------NFEGTM------RKVL-----VRSYLDEPRSLALNPI------DGWMYW  606 (734)
Q Consensus       565 d~~~~~I------~~~---------------~ldG~~------~~~l-----~~~~l~~P~~iavD~~------~g~LYw  606 (734)
                      +.+...+      .+.               +.+|..      ...+     ....-..|.||++-.-      ++.||+
T Consensus       257 e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV  336 (399)
T COG2133         257 EHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFV  336 (399)
T ss_pred             ecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEE
Confidence            9876322      111               011111      0000     1112235678887421      267888


Q ss_pred             EecCCCceEEEeccCCCce---EEEEEcC-CCCceeEEEecCCCeEEEEeCC-CCeEEEEecCC
Q psy8875         607 SDWGQNAKIERAGMDGSHR---NMVIVSD-IKWPNGLTLDLVQRRLYWVDAK-LNEISSCDYNG  665 (734)
Q Consensus       607 td~~~~~~I~~~~ldG~~~---~~lv~~~-l~~P~glavD~~~~~LYw~D~~-~~~I~~~~~dG  665 (734)
                      ...+. -.+.+.+.+|..+   +.++..+ -..|.++++. ..+.||++|.. .++|+|+.+.+
T Consensus       337 ~~hgs-w~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~-~DGallv~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         337 GAHGS-WPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVA-PDGALLVLTDQGDGRILRVSYAG  398 (399)
T ss_pred             Eeecc-eeEEEeccCCCcceEEEEEEecCCCCcccceEEC-CCCeEEEeecCCCCeEEEecCCC
Confidence            88764 3567788888733   2233322 2589999997 56677777654 77999998765

>KOG0291|consensus

Probab=96.84  E-value=0.52  Score=53.56  Aligned_cols=160  Identities=9%  Similarity=0.019  Sum_probs=103.5

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~  580 (734)
                      ..++..++|.+ .+.+..+-...++|...+...|. -.+.+...-....++.+- ..++..++-+..++|+..+|. .+.
T Consensus       350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~-~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFT-ARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccceeeEEECC-CCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEE-ecCCEEEEeecCCeEEeeeecccce
Confidence            45677888886 45566677778888888877443 333344444566777776 556677777777778777773 445


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      -+++....-.+-.-|||||.+..+...+ -....|++.++.-....-+++..-.-..+|++++.+..|+-..| .++|..
T Consensus       427 fRTft~P~p~QfscvavD~sGelV~AG~-~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW-DkTVRi  504 (893)
T KOG0291|consen  427 FRTFTSPEPIQFSCVAVDPSGELVCAGA-QDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW-DKTVRI  504 (893)
T ss_pred             eeeecCCCceeeeEEEEcCCCCEEEeec-cceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc-cceEEE
Confidence            5555545555667899999655554444 34578888887655444455555555578999988887775554 355665


Q ss_pred             EecCCC
Q psy8875         661 CDYNGG  666 (734)
Q Consensus       661 ~~~dG~  666 (734)
                      .++-++
T Consensus       505 W~if~s  510 (893)
T KOG0291|consen  505 WDIFSS  510 (893)
T ss_pred             EEeecc
Confidence            555444

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=96.82  E-value=0.18  Score=53.99  Aligned_cols=131  Identities=12%  Similarity=0.097  Sum_probs=89.6

Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      +.+.......|.+.+.+|...+.+. ..+....++++++...++-+++  ....|+.++++..+.+.+-.+....-.+++
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~idkS~~~lItdf~  450 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLIDKSEYGLITDFD  450 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEecccccceeEEEE
Confidence            3344444568999999988766554 7888999999998766777776  357999999998888776555555566777


Q ss_pred             EecCCCeEEEEeC---CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC
Q psy8875         641 LDLVQRRLYWVDA---KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ  697 (734)
Q Consensus       641 vD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~  697 (734)
                      +.+....|-++=.   .+..|..++++|.....+.+.   -.+-++-|+  .+.+||+....
T Consensus       451 ~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs~R  509 (668)
T COG4946         451 WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPDGRYLYFLSAR  509 (668)
T ss_pred             EcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCCCcEEEEEecc
Confidence            7655555544422   345788888888766555432   233444444  67889987543

>KOG0279|consensus

Probab=96.82  E-value=0.44  Score=47.99  Aligned_cols=205  Identities=10%  Similarity=0.028  Sum_probs=136.6

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      .+..++..+ .+..+++-.-.+.++..++.+|.....+. .-.....++||.+.++ -.++-+...+|...+.-|.-..+
T Consensus        65 ~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t  141 (315)
T KOG0279|consen   65 FVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYT  141 (315)
T ss_pred             EecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEE
Confidence            344555554 45555665667788888888664443333 3445678899986554 45677778899999988887777


Q ss_pred             EEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         584 LVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       584 l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      +.... ..+..-+.+.|.....|+...+....+..-++++-..+..........+.+++. ..|.|--.-.+.+.+...+
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~Lwd  220 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWD  220 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEE
Confidence            77655 778889999998766666665655677777888766655555566778899997 4666666667778899888


Q ss_pred             cCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         663 YNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       663 ~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++.+..-.-+   .....-.+|++..++++..-....+|...+..++..+..+
T Consensus       221 L~~~k~lysl---~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  221 LNEGKNLYSL---EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             ccCCceeEec---cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence            8765442211   2233345666666655555544456666677666665554

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.72  E-value=0.3  Score=54.07  Aligned_cols=227  Identities=13%  Similarity=0.117  Sum_probs=117.0

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      .++..+.++.....+.........-+|.+....|.++....   .+|+..+++.+....+ +. -...-...++-+.+++
T Consensus       174 ~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i-~~-~~g~~~~P~fspDG~~  251 (425)
T COG0823         174 ELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI-LN-FNGNNGAPAFSPDGSK  251 (425)
T ss_pred             eEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee-ec-cCCccCCccCCCCCCE
Confidence            34445555555555544333334445555566655554443   3488888885544333 33 1122234455556777


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE-EEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM-YWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L-Ywtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |.++...  ...|++++++++....|.... ..-..=.+.|...+| |.+|.+..+.|++++++|+..+.+....- ...
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~-gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~-~~~  329 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGF-GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG-GNS  329 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCC-ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC-CCc
Confidence            7777655  457999999998865544221 111122334445555 45565556899999999998755543322 222


Q ss_pred             eEEEecCCCeEEEEeCCCCe--EEEEecCCCceEEEEcCCCCCCCCeEEEEECCE-EEEEeCCCCceEEEeccCCCceEE
Q psy8875         638 GLTLDLVQRRLYWVDAKLNE--ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW-LYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~--I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~-lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      --.+.+.+.+|-+.....+.  |...++.......++.... ...+-..+..+.. +|.+....+.+...-..+|.....
T Consensus       330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~  408 (425)
T COG0823         330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRP  408 (425)
T ss_pred             CccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEE
Confidence            33455556666666533333  5555543333133333322 2222234443333 333344444554444556665544


Q ss_pred             E
Q psy8875         715 I  715 (734)
Q Consensus       715 l  715 (734)
                      +
T Consensus       409 ~  409 (425)
T COG0823         409 L  409 (425)
T ss_pred             E
Confidence            3

>KOG1225|consensus

Probab=96.71  E-value=0.0069  Score=67.24  Aligned_cols=132  Identities=25%  Similarity=0.591  Sum_probs=88.7

Q ss_pred             CCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCC-CceEeCccc
Q psy8875          75 DGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN-NRCIPNHWQ  153 (734)
Q Consensus        75 dg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~-g~Ci~~~~~  153 (734)
                      |+...|.+++-...|....|+..   |.+. |+|.      +|+.-|++|+...+|....|+..   |.. +.|++    
T Consensus       233 ~~ic~c~~~~~g~~c~~~~C~~~---c~~~-g~c~------~G~CIC~~Gf~G~dC~e~~Cp~~---cs~~g~~~~----  295 (525)
T KOG1225|consen  233 DGICECPEGYFGPLCSTIYCPGG---CTGR-GQCV------EGRCICPPGFTGDDCDELVCPVD---CSGGGVCVD----  295 (525)
T ss_pred             CceeecCCceeCCccccccCCCC---Cccc-ceEe------CCeEeCCCCCcCCCCCcccCCcc---cCCCceecC----
Confidence            45566778888888877777653   3332 4443      34556888898888876667654   332 23333    


Q ss_pred             cCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCcee
Q psy8875         154 CDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFR  233 (734)
Q Consensus       154 Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~  233 (734)
                        |+..|.+|+-...        |+.  .+|+..|.+.+.|.+    -+|.|.+||+|..|...       .|.  +..+
T Consensus       296 --g~CiC~~g~~G~d--------Cs~--~~cpadC~g~G~Ci~----G~C~C~~Gy~G~~C~~~-------~C~--~~g~  350 (525)
T KOG1225|consen  296 --GECICNPGYSGKD--------CSI--RRCPADCSGHGKCID----GECLCDEGYTGELCIQR-------ACS--GGGQ  350 (525)
T ss_pred             --CEeecCCCccccc--------ccc--ccCCccCCCCCcccC----CceEeCCCCcCCccccc-------ccC--CCce
Confidence              3445777877766        653  237777777777763    47999999999887765       365  6777


Q ss_pred             eCCCceecCcCCCCCCCCCCCCCCCCC
Q psy8875         234 CTGGMCIPSTWVCDGQNDCPDGVDEKK  260 (734)
Q Consensus       234 C~~g~Ci~~~~~Cdg~~dC~dg~de~~  260 (734)
                      |.+| |+           |.+|+-+.+
T Consensus       351 cv~g-C~-----------C~~Gw~G~d  365 (525)
T KOG1225|consen  351 CVNG-CK-----------CKKGWRGPD  365 (525)
T ss_pred             eccC-ce-----------eccCccCCC
Confidence            7777 77           888887665

>KOG0291|consensus

Probab=96.53  E-value=0.56  Score=53.28  Aligned_cols=212  Identities=10%  Similarity=0.040  Sum_probs=123.4

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      .......|+.|.. .+++.++..-.++|...++........+..+...+-.-||||+.+..+.......-.|++.++...
T Consensus       390 eHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG  468 (893)
T KOG0291|consen  390 EHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG  468 (893)
T ss_pred             cCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC
Confidence            3445667777774 555556666677887777775544444444344455689999877767766666778999999776


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeE-
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI-  658 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I-  658 (734)
                      ...-++.+.-....+|+++|....|+=..|...-+||-+--.-+..+++-.  .....++++-|.+..|-++... +.| 
T Consensus       469 qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i--~sdvl~vsfrPdG~elaVaTld-gqIt  545 (893)
T KOG0291|consen  469 QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEI--RSDVLAVSFRPDGKELAVATLD-GQIT  545 (893)
T ss_pred             eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEee--ccceeEEEEcCCCCeEEEEEec-ceEE
Confidence            666666666666778999999998888888765566554322222333321  1223456666666666666432 122 


Q ss_pred             --------EEEecCCC-------c-eEEEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         659 --------SSCDYNGG-------N-RRLVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       659 --------~~~~~dG~-------~-~~~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                              .+-.++|.       . ..++.........++ .|.+ +.|....+-..++.|-.++..++..++.+
T Consensus       546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf  620 (893)
T KOG0291|consen  546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF  620 (893)
T ss_pred             EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence                    22222321       1 111222122233343 4666 45556666556666666665666555544

>KOG1225|consensus

Probab=96.53  E-value=0.011  Score=65.79  Aligned_cols=15  Identities=20%  Similarity=-0.018  Sum_probs=8.9

Q ss_pred             CceecCCCceecCcC
Q psy8875          58 TMFRCTGGMCIPSTW   72 (734)
Q Consensus        58 ~~f~C~~g~Ci~~~~   72 (734)
                      ..+.+..|+|.....
T Consensus        99 ~~~~~~~g~~~~~~~  113 (525)
T KOG1225|consen   99 GGGICSLGKCELFFG  113 (525)
T ss_pred             cccccccceeeeeec
Confidence            556666666665544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.52  E-value=0.0047  Score=39.80  Aligned_cols=28  Identities=25%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             CCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      +..|.|||+| ..++||++|..+++|.+.
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            3579999999 889999999999999763

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG0315|consensus

Probab=96.47  E-value=1.1  Score=44.62  Aligned_cols=184  Identities=10%  Similarity=0.047  Sum_probs=110.1

Q ss_pred             ceeeeeec--cceEEee-cCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCcc
Q psy8875         475 ASLLFARK--HDIRKIS-LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~~--~~I~~i~-l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~  550 (734)
                      +.+|.+.+  +.||--. +.|.-...+-.......+|.+-+..+.|-.  .....|+.++++.++. ....+...-.++.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCCceeEEeccCCceE
Confidence            44555443  3454333 344444555555566777777765554433  3456677777776555 3333333335667


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVI  629 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv  629 (734)
                      .+.+...++.+| |.+..+.+.+.+|.......++.. ....+.|+++|..+.|+..|.  ++.|+.-++.-. -...++
T Consensus        88 aVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~~-~spVn~vvlhpnQteLis~dq--sg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   88 AVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLHPNQTELISGDQ--SGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEEEeecCeEEE-ecCCCceEEEEeccCcccchhccC-CCCcceEEecCCcceEEeecC--CCcEEEEEccCCccccccC
Confidence            777775555454 666678888888866443334422 255689999999999999994  467777766433 223345


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      .+.......|+|++.+.+|--+ ..++..+.-++-+
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~-nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAA-NNKGNCYVWRLLN  198 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEe-cCCccEEEEEccC
Confidence            4555556789998766655444 3455566555443

>KOG0289|consensus

Probab=96.45  E-value=1.1  Score=47.90  Aligned_cols=201  Identities=11%  Similarity=0.071  Sum_probs=119.0

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG  578 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG  578 (734)
                      .......++..++.+.++.|++. .+.+--.++..|....++... .-.....+++++ .+.||.+-...+.|.+.++..
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~-d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASN-DGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccceeeeeccCCcEEEEecC-CceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCC
Confidence            34445678888888888888764 333333344445554444332 222356778874 588999988888888888875


Q ss_pred             CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      .....-+.......+.|++. .+||...+... ...|.-.++-- .+.+++........+.+.+|..+.+|-.+ ...-+
T Consensus       379 ~~~~a~Fpght~~vk~i~Fs-ENGY~Lat~ad-d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~  455 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISFS-ENGYWLATAAD-DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQ  455 (506)
T ss_pred             ccccccCCCCCCceeEEEec-cCceEEEEEec-CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeE
Confidence            55333333445567889986 57766666543 23354444421 23344444444457889999777766655 33335


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~  705 (734)
                      |+.+.....+-+.+.......+.-.++.+-+...|.++....+++++-
T Consensus       456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            555554444433333322223344566676777888887777776653

>PTZ00421 coronin; Provisional

Probab=96.41  E-value=2.4  Score=48.03  Aligned_cols=120  Identities=10%  Similarity=0.033  Sum_probs=75.2

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL  573 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~  573 (734)
                      .....+.+|+|++..+.++.+-...+.|...++..+..      ....+......+..|++.+..++++++-...+.|.+
T Consensus        73 GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrI  152 (493)
T PTZ00421         73 GQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNV  152 (493)
T ss_pred             CCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEE
Confidence            34456789999885555566666677887777653321      112222223456678888776677777777889999


Q ss_pred             EeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         574 ANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       574 ~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .++........+........+|++.|. |.++++-. ..+.|...++.
T Consensus       153 WDl~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs-~Dg~IrIwD~r  198 (493)
T PTZ00421        153 WDVERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTS-KDKKLNIIDPR  198 (493)
T ss_pred             EECCCCeEEEEEcCCCCceEEEEEECC-CCEEEEec-CCCEEEEEECC
Confidence            998755444444444456788999885 44555442 34566666654

>KOG0273|consensus

Probab=96.39  E-value=0.94  Score=48.80  Aligned_cols=136  Identities=15%  Similarity=0.126  Sum_probs=86.8

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      +..++....+|.....+...-..+.+|-|.....+|. +-...+++...+...|.....+   .+....+|.|||.+..-
T Consensus       256 ~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f---~~~s~~~lDVdW~~~~~  331 (524)
T KOG0273|consen  256 DGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQF---EFHSAPALDVDWQSNDE  331 (524)
T ss_pred             CcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEee---eeccCCccceEEecCce
Confidence            3445556667665555544555667888875444443 3334566666665534432222   24455589999999999


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCC
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDG  622 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG  622 (734)
                      |.+-...+.|++..+++.....-+.+.-....+|-.+|. |.|.-+-.. ..-+||...-++
T Consensus       332 F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t-g~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  332 FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT-GSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             EeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC-CceEEEecCCCeeEeeecCCCc
Confidence            999998999999999887765555456667889999985 555555422 234666654433

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=96.28  E-value=0.0038  Score=43.51  Aligned_cols=35  Identities=40%  Similarity=1.011  Sum_probs=25.7

Q ss_pred             ccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcc
Q psy8875         389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       389 ~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      +++|... ..|.+  .|++++++|.|.|++||.   +++.|
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~---~g~~C   38 (39)
T smart00179        2 IDECASG-NPCQNGGTCVNTVGSYRCECPPGYT---DGRNC   38 (39)
T ss_pred             cccCcCC-CCcCCCCEeECCCCCeEeECCCCCc---cCCcC
Confidence            5667642 34654  899999999999999995   35555

>KOG0285|consensus

Probab=96.27  E-value=0.75  Score=47.86  Aligned_cols=224  Identities=12%  Similarity=0.059  Sum_probs=130.1

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|...++........++ ......+|++..+.-+||-. ...+.|.-.+|.. .....-..+-+..+..|++.|.- .
T Consensus       172 DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~-gedk~VKCwDLe~-nkvIR~YhGHlS~V~~L~lhPTl-d  248 (460)
T KOG0285|consen  172 DRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA-GEDKQVKCWDLEY-NKVIRHYHGHLSGVYCLDLHPTL-D  248 (460)
T ss_pred             CceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe-cCCCeeEEEechh-hhhHHHhccccceeEEEeccccc-e
Confidence            3456666777666655555 35567899998766665544 2355666677762 22111122356677888888654 4


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGL  639 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~gl  639 (734)
                      +.+|-.....|.+.++..+....++.+.-.....+..-|.+..||-...  ...|.--++ .|....++.. .-....+|
T Consensus       249 vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~--D~tvrlWDl~agkt~~tlt~-hkksvral  325 (460)
T KOG0285|consen  249 VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH--DSTVRLWDLRAGKTMITLTH-HKKSVRAL  325 (460)
T ss_pred             eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC--CceEEEeeeccCceeEeeec-ccceeeEE
Confidence            5566666778999999887766666555555556666666555554432  233333333 2322333322 22335677


Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         640 TLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       640 avD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++.+. ..+ ++.+..+.|...++- |....- ++.  .-.-...|++..+-+|++-..++.|+..+-.+|-+.+.+.
T Consensus       326 ~lhP~-e~~-fASas~dnik~w~~p~g~f~~n-lsg--h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~  398 (460)
T KOG0285|consen  326 CLHPK-ENL-FASASPDNIKQWKLPEGEFLQN-LSG--HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ  398 (460)
T ss_pred             ecCCc-hhh-hhccCCccceeccCCccchhhc-ccc--ccceeeeeeeccCceEEEcCCceEEEEEecCcCccccccc
Confidence            77543 334 355556677776643 332222 221  1222346777888899998888888888777777666553

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.26  E-value=0.0034  Score=38.48  Aligned_cols=23  Identities=26%  Similarity=0.865  Sum_probs=19.8

Q ss_pred             ceEEecCCCeeeCCCCCccccccc
Q psy8875         449 GFKCECVAGYIKDPHHPTQCKAAE  472 (734)
Q Consensus       449 ~~~C~C~~gy~~~~~~~t~C~~~~  472 (734)
                      ||+|.|++||.+.+++++ |.+++
T Consensus         1 sy~C~C~~Gy~l~~d~~~-C~DId   23 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRS-CEDID   23 (24)
T ss_pred             CEEeeCCCCCcCCCCCCc-cccCC
Confidence            699999999999988766 98764

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=96.23  E-value=0.0017  Score=44.44  Aligned_cols=31  Identities=35%  Similarity=0.946  Sum_probs=18.0

Q ss_pred             CCCCCc--CccccCCCcceeecCCCcEecCCCCcc
Q psy8875         395 DNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       395 ~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      ++++|.  +.|.+++++|+|.|++||..  ||..|
T Consensus         4 ~~~~C~~nA~C~~~~~~~~C~C~~Gy~G--dG~~C   36 (36)
T PF12947_consen    4 NNGGCHPNATCTNTGGSYTCTCKPGYEG--DGFFC   36 (36)
T ss_dssp             GGGGS-TTCEEEE-TTSEEEEE-CEEEC--CSTCE
T ss_pred             CCCCCCCCcEeecCCCCEEeECCCCCcc--CCcCC
Confidence            344553  46777777888888888765  45443

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG2397|consensus

Probab=96.20  E-value=0.0043  Score=66.70  Aligned_cols=70  Identities=36%  Similarity=0.637  Sum_probs=57.4

Q ss_pred             CCceecCCC-ceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCC--CeeeCCCCCCCCCCCCCCCCCcC
Q psy8875          57 STMFRCTGG-MCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP--GECVPLTWMCDDNPDCSDGSDEK  128 (734)
Q Consensus        57 ~~~f~C~~g-~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~--~~Ci~~~~~Cdg~~dC~dg~de~  128 (734)
                      ...|+|.+| .=|+...+=|...||.||+||..  ...|+...|+|.|..  ..=||.+.+=||+.||=||+||.
T Consensus        42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG--tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~  114 (480)
T KOG2397|consen   42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPG--TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEY  114 (480)
T ss_pred             ccceeeccCCcccCHHHhccccccCCCCCCCCc--cccCCCCceeeeecCCCceeeechhccCcccccccCCCCc
Confidence            358999987 77899999999999999999963  346888999998751  24678888889999999999885

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.18  E-value=0.29  Score=52.39  Aligned_cols=116  Identities=19%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             CceeEEEeCCCCeEEEEecCC-----CceEEEeccCCCceEEE-EEcCC-------------CCceeEEEecCCCeEEEE
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQ-----NAKIERAGMDGSHRNMV-IVSDI-------------KWPNGLTLDLVQRRLYWV  651 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~-----~~~I~~~~ldG~~~~~l-v~~~l-------------~~P~glavD~~~~~LYw~  651 (734)
                      .+.+|++ +..|.+||++.+.     .++|++++++|...+.+ +...+             .-..|||+.+.+.+||.+
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            7779999 6789999999653     28999999999875544 22211             124589999887778877


Q ss_pred             eCC-------C--------CeEEEEecCC--C-ceEEEEcCCC-----CCCCCeEE-EEECCEEEEEeCC-------CCc
Q psy8875         652 DAK-------L--------NEISSCDYNG--G-NRRLVLYSPQ-----TLSHPFSI-STFEDWLYWSDWQ-------QKA  700 (734)
Q Consensus       652 D~~-------~--------~~I~~~~~dG--~-~~~~i~~~~~-----~~~~P~gl-~v~~~~lywtd~~-------~~~  700 (734)
                      --.       .        -+|.+++...  . ....++....     ....+..| ++.+++|++.+..       ..+
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r  244 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR  244 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence            321       1        2566666542  1 1222222111     12334344 4467789998766       345


Q ss_pred             eEEEecc
Q psy8875         701 IYKANKF  707 (734)
Q Consensus       701 v~~~~~~  707 (734)
                      |++++..
T Consensus       245 i~~v~l~  251 (326)
T PF13449_consen  245 IYRVDLS  251 (326)
T ss_pred             EEEEEcc
Confidence            6666643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.18  E-value=2.4  Score=51.33  Aligned_cols=161  Identities=9%  Similarity=0.011  Sum_probs=92.2

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC----Cc---eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG----SE---RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g----~~---~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      ...+.+|+|++.. .++.+-...+.|...++...    ..   ....+. ....+.+++..+..+.+..+-...+.|.+.
T Consensus       483 ~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lW  560 (793)
T PLN00181        483 SNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVW  560 (793)
T ss_pred             CCcEEEEEECCCC-CEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEE
Confidence            3457789999754 44445455677776665321    10   011111 223345566654445566666667889999


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~  654 (734)
                      ++........+........+|+++|..+.++++-. ..+.|...++........+... .....+.+....+.++.+-..
T Consensus       561 d~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        561 DVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-DDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             ECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-CCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence            98765444444445566789999887777777763 3456666666533322222221 233455554445666666666


Q ss_pred             CCeEEEEecCCC
Q psy8875         655 LNEISSCDYNGG  666 (734)
Q Consensus       655 ~~~I~~~~~dG~  666 (734)
                      .+.|...++...
T Consensus       639 dg~I~iwD~~~~  650 (793)
T PLN00181        639 DHKVYYYDLRNP  650 (793)
T ss_pred             CCeEEEEECCCC
Confidence            778888877543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.13  E-value=1.2  Score=47.53  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=74.5

Q ss_pred             CccceeeeccCCcEEEEeCCC------CeEEEEeCCCCceEEE-EcC-------------CCCCceeEEEeCCCCeEEEE
Q psy8875         548 IADGLAVDWIYSHIYWTDAHK------NTIELANFEGTMRKVL-VRS-------------YLDEPRSLALNPIDGWMYWS  607 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~~------~~I~~~~ldG~~~~~l-~~~-------------~l~~P~~iavD~~~g~LYwt  607 (734)
                      .++||++ ...+.+||++...      .+|.+++++|...+.+ +..             .-....+||+.|....||.+
T Consensus        86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            6789999 5889999999999      9999999999886554 221             12345699999987768777


Q ss_pred             ecCC-------C-------ceEEEeccC--CC-ceEEEEE-c------CCCCceeEEEecCCCeEEEEeCC-------CC
Q psy8875         608 DWGQ-------N-------AKIERAGMD--GS-HRNMVIV-S------DIKWPNGLTLDLVQRRLYWVDAK-------LN  656 (734)
Q Consensus       608 d~~~-------~-------~~I~~~~ld--G~-~~~~lv~-~------~l~~P~glavD~~~~~LYw~D~~-------~~  656 (734)
                      -.+.       .       .+|.+.+..  |. ..+..+. .      ....+..|+.- .+++|++.+..       ..
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~  243 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYK  243 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceE
Confidence            5321       1       356666654  21 1222222 1      12334444442 46778888754       34


Q ss_pred             eEEEEecCCC
Q psy8875         657 EISSCDYNGG  666 (734)
Q Consensus       657 ~I~~~~~dG~  666 (734)
                      +|+.+++.+.
T Consensus       244 ri~~v~l~~a  253 (326)
T PF13449_consen  244 RIYRVDLSDA  253 (326)
T ss_pred             EEEEEEcccc
Confidence            7888887643

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.07  E-value=0.54  Score=52.03  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=84.2

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      .+|++.+++...+.+++... ..-...++-|...+|.++-.. ....|+.++++++....|... ...-..=++.+.+.+
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~  295 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSK  295 (425)
T ss_pred             ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCE
Confidence            46999999888777777422 222344555656666666533 357899999999886554322 111113345567888


Q ss_pred             EEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCc--eEEEeccCCCceEEEecc
Q psy8875         648 LYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKA--IYKANKFTGDNLTAITGV  718 (734)
Q Consensus       648 LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~--v~~~~~~~G~~~~~l~~~  718 (734)
                      ||++-.  +.-.|++++++|+..+.+......-..| .+.-++++|-+.....+.  |...+..+|...+++...
T Consensus       296 ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p-~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~  369 (425)
T COG0823         296 IVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNP-VWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST  369 (425)
T ss_pred             EEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCc-cCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc
Confidence            888753  3448999999999876665432222222 233345555555432222  444444445445555433

>KOG0318|consensus

Probab=96.02  E-value=2.5  Score=46.27  Aligned_cols=194  Identities=11%  Similarity=0.037  Sum_probs=108.2

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..+.+.+|++.+...+||-. ...+.|..-+...|....+.-...-..+.+|+.. ..+.||-.-+ ..++.+.++.+..
T Consensus       319 HnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~~~t~g~-Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSG-SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGELFTIGW-DDTLRVISLKDNG  395 (603)
T ss_pred             cccceeEEEEcCCCCEEEee-ccCceEEEEecCCccccccccccccceEEEEeec-CCCcEEEEec-CCeEEEEecccCc
Confidence            46778899998877666644 4578888877765544333222233456778776 4456655444 5778888774332


Q ss_pred             eE-EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         581 RK-VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       581 ~~-~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      .. ..+..-..+|.+||+.+..+.+..+-..   .|.... +.+..  ....-...|.++|+.+....+ .+-...++|.
T Consensus       396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~---~iv~l~-~~~~~--~~~~~~y~~s~vAv~~~~~~v-aVGG~Dgkvh  468 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACIS---DIVLLQ-DQTKV--SSIPIGYESSAVAVSPDGSEV-AVGGQDGKVH  468 (603)
T ss_pred             ccccceeecCCCceeEEEcCCCCEEEEEecC---cEEEEe-cCCcc--eeeccccccceEEEcCCCCEE-EEecccceEE
Confidence            21 1112345689999999876677776532   232222 11111  111234568899997555443 3334456688


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~  705 (734)
                      .+.+.|..+............+..|++.  +.+|-.+|.. ++|...+
T Consensus       469 vysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-rkvv~yd  515 (603)
T KOG0318|consen  469 VYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-RKVVLYD  515 (603)
T ss_pred             EEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-CcEEEEE
Confidence            8888886644332222334445666663  3444445554 3343333

>KOG3509|consensus

Probab=95.94  E-value=0.054  Score=64.11  Aligned_cols=96  Identities=31%  Similarity=0.707  Sum_probs=85.3

Q ss_pred             ceecCcCCCCCCCCCCCCCCCCCCC---CCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCCCC----CCCCCCcee
Q psy8875         238 MCIPSTWVCDGQNDCPDGVDEKKCH---ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQP----VKCTAGQFT  310 (734)
Q Consensus       238 ~Ci~~~~~Cdg~~dC~dg~de~~C~---~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C~~----~~C~~~~~~  310 (734)
                      +|......|++..|+.+-+|+.++.   ..+.++.+.|.++++....|.||....+.++++..+|..    ..|.+..+.
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQ   81 (964)
T ss_pred             chhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCcCCccccccccccCCcccc
Confidence            5667788999999999999999886   578899999999999999999999999999998888762    467888899


Q ss_pred             cCCCCccccccccccCCCCCCCC
Q psy8875         311 CQNLTACIPDKWVCDGDTVEKDS  333 (734)
Q Consensus       311 C~~~~~Ci~~~~~Cdg~~dC~d~  333 (734)
                      |.+.-++...+..|+|.++|.++
T Consensus        82 c~~~~~~~~~~~~~~g~~~~~~~  104 (964)
T KOG3509|consen   82 CRDRLRCNPQSFQCDGTNDCKDG  104 (964)
T ss_pred             cccchhcCCccccccCCCCCCcc
Confidence            99867899999999999999988

>KOG0285|consensus

Probab=95.91  E-value=0.39  Score=49.91  Aligned_cols=157  Identities=9%  Similarity=0.026  Sum_probs=92.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      .+.-+..||+||. +.-|.+....+.|...++..|.... .+.+-+...+++||....-.||-+-. .+.|.-.+|.-..
T Consensus       150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~rHpYlFs~ge-dk~VKCwDLe~nk  226 (460)
T KOG0285|consen  150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSKRHPYLFSAGE-DKQVKCWDLEYNK  226 (460)
T ss_pred             ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEE-eecchhheeeeeeecccCceEEEecC-CCeeEEEechhhh
Confidence            4556788999985 5666677778888888988654433 33446778999999866666665433 4667667775433


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ...-..+.+.....|++.|.-..|+-..  ....|.+-+|-......++...-.....+..-+.+..||- -+....|..
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit-~S~D~tvrl  303 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT-GSHDSTVRL  303 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE-ecCCceEEE
Confidence            2222346788889999999766665443  2344544455433332222222222233444444555543 233445555


Q ss_pred             Eec
Q psy8875         661 CDY  663 (734)
Q Consensus       661 ~~~  663 (734)
                      -++
T Consensus       304 WDl  306 (460)
T KOG0285|consen  304 WDL  306 (460)
T ss_pred             eee
Confidence            554

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=95.85  E-value=1.6  Score=45.34  Aligned_cols=162  Identities=17%  Similarity=0.073  Sum_probs=89.5

Q ss_pred             CCCCCccceeeeccCCcEEEEeCCCCeEEEE----e------CCCCceEEEE-----cCCCCCceeEEEeCCCCeEEEEe
Q psy8875         544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELA----N------FEGTMRKVLV-----RSYLDEPRSLALNPIDGWMYWSD  608 (734)
Q Consensus       544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~----~------ldG~~~~~l~-----~~~l~~P~~iavD~~~g~LYwtd  608 (734)
                      ..+..|=||++.  .+.||.+..  .+|++.    +      ..+..-+..+     .++.-..-.||+  ..+.+++.+
T Consensus        46 r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~fVN  119 (335)
T TIGR03032        46 RTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLLFVN  119 (335)
T ss_pred             eccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEEEEE
Confidence            356778888886  577888765  345444    1      1122111111     122234556777  355666665


Q ss_pred             cCCCceEEEeccCCCceE----EEEE----cCCCCceeEEEecCCCeEEEEeCC-C--CeEEEEe-cCCC------ceEE
Q psy8875         609 WGQNAKIERAGMDGSHRN----MVIV----SDIKWPNGLTLDLVQRRLYWVDAK-L--NEISSCD-YNGG------NRRL  670 (734)
Q Consensus       609 ~~~~~~I~~~~ldG~~~~----~lv~----~~l~~P~glavD~~~~~LYw~D~~-~--~~I~~~~-~dG~------~~~~  670 (734)
                      .. -+-|-..+.+.+-..    .+++    ++-=+-||||++ .++--|++--. +  ..=+|-+ .+|.      ..++
T Consensus       120 T~-fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev  197 (335)
T TIGR03032       120 TL-FSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV  197 (335)
T ss_pred             Cc-ceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE
Confidence            32 244444444433221    1232    222356899996 44455555311 1  1122222 1222      2234


Q ss_pred             EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         671 VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++.   .+..|.+.-+++++||+.|+++++|.++++.+|+...+..
T Consensus       198 l~~---GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~  240 (335)
T TIGR03032       198 VAS---GLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF  240 (335)
T ss_pred             EEc---CccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE
Confidence            443   3677888889999999999999999999988888766643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0266|consensus

Probab=95.83  E-value=4.1  Score=45.85  Aligned_cols=158  Identities=11%  Similarity=0.118  Sum_probs=95.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEec-CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPI-DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l-~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+..++|.+.. .+.++-....+|+..++ ..+....++. .-...+..+++.+.+ +++.+-...+.|.+.++.+..
T Consensus       203 ~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  203 TRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCe
Confidence            4456778887644 44455555666766666 3233333433 345567899999887 888888888999999998755


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE--EEEEcCCCC-c-eeEEEecCCCeEEEEeCCCC
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN--MVIVSDIKW-P-NGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~--~lv~~~l~~-P-~glavD~~~~~LYw~D~~~~  656 (734)
                      ....+........++++.+. +.++++. ...+.|...++......  ..+...... | .-+.+.+ ++...|+-...+
T Consensus       280 ~~~~l~~hs~~is~~~f~~d-~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp-~~~~ll~~~~d~  356 (456)
T KOG0266|consen  280 CVRKLKGHSDGISGLAFSPD-GNLLVSA-SYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSP-NGKYLLSASLDR  356 (456)
T ss_pred             EEEeeeccCCceEEEEECCC-CCEEEEc-CCCccEEEEECCCCceeeeecccCCCCCCceeEEEECC-CCcEEEEecCCC
Confidence            54455455667788999875 4555554 23567777777665522  122222111 2 4555553 444444545555


Q ss_pred             eEEEEecCC
Q psy8875         657 EISSCDYNG  665 (734)
Q Consensus       657 ~I~~~~~dG  665 (734)
                      .|...++..
T Consensus       357 ~~~~w~l~~  365 (456)
T KOG0266|consen  357 TLKLWDLRS  365 (456)
T ss_pred             eEEEEEccC
Confidence            666666663

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=95.82  E-value=1.5  Score=43.65  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=60.4

Q ss_pred             CCCCCccceeee--ccCCcEEEEeC-CCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875         544 EDKTIADGLAVD--WIYSHIYWTDA-HKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQNAK  614 (734)
Q Consensus       544 ~~~~~p~glAvD--~~~~~lY~td~-~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~~~~  614 (734)
                      .++..|.||++.  ++++..|+--. ..+.|....+    +|..+..++.  .--.+-.|+++|-..|.||+++.  .-.
T Consensus       150 s~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE--dva  227 (364)
T COG4247         150 SSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE--DVA  227 (364)
T ss_pred             cCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec--cce
Confidence            467788899984  44455554322 2466666554    3333333332  11235679999999999999983  468


Q ss_pred             EEEeccC---CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         615 IERAGMD---GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       615 I~~~~ld---G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      ||+...+   |..++++ . .+.--..|+-|..+=.||+..-+.+
T Consensus       228 iWK~~Aep~~G~~g~~i-d-r~~d~~~LtdDvEGltiYy~pnGkG  270 (364)
T COG4247         228 IWKYEAEPNRGNTGRLI-D-RIKDLSYLTDDVEGLTIYYGPNGKG  270 (364)
T ss_pred             eeecccCCCCCCccchh-h-hhcCchhhcccccccEEEEcCCCcE
Confidence            8887664   3333332 2 2221123444544445555544333

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=95.81  E-value=0.0061  Score=61.53  Aligned_cols=41  Identities=37%  Similarity=0.810  Sum_probs=34.8

Q ss_pred             Cc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCc
Q psy8875         386 KC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHT  426 (734)
Q Consensus       386 ~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~  426 (734)
                      .| ++++|...+..|.+.|.+++++|.|.|++||.|..++++
T Consensus       183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~~  224 (224)
T cd01475         183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT  224 (224)
T ss_pred             cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCCC
Confidence            46 677888777789999999999999999999999877653

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG0994|consensus

Probab=95.76  E-value=0.076  Score=62.30  Aligned_cols=64  Identities=25%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             Cccc-cCCCCCccCCCccccccCCCCCCCCCCce--eeCCCceecC----cCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy8875         200 KISC-ACPEGLKLLPDLLMCAEAGSKPCRNSTMF--RCTGGMCIPS----TWVCDGQNDCPDGVDEKKCHETCRSDE  269 (734)
Q Consensus       200 ~~~C-~C~~G~~~~~~~~~~~~~~~~~C~~~~~~--~C~~g~Ci~~----~~~Cdg~~dC~dg~de~~C~~~C~~~~  269 (734)
                      .+.| .|.+||.|.|-.-.-..|.+-+|+ ++.-  +=.-..|-..    .-+|.    |..|+.+..|+ .|.++.
T Consensus       884 G~~CdrCl~GyyGdP~lg~g~~CrPCpCP-~gp~Sg~~~A~sC~~d~~t~~ivC~----C~~GY~G~RCe-~CA~~~  954 (1758)
T KOG0994|consen  884 GHSCDRCLDGYYGDPRLGSGIGCRPCPCP-DGPASGRQHADSCYLDTRTQQIVCH----CQEGYSGSRCE-ICADNH  954 (1758)
T ss_pred             ccchhhhhccccCCcccCCCCCCCCCCCC-CCCccchhccccccccccccceeee----cccCccccchh-hhcccc
Confidence            3444 577888777654322223333443 1110  0000124322    33565    88888888775 344443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.74  E-value=1.9  Score=45.49  Aligned_cols=174  Identities=11%  Similarity=0.112  Sum_probs=89.6

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc------ceeee
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD------GLAVD  555 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~------glAvD  555 (734)
                      ...|-.+++....+..-++...- . +.| |..+.-|.+-=..+++..+.|+.....+.... .+..|.      .-++.
T Consensus       117 a~SVtVVDl~~~kvv~ei~~PGC-~-~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t-~~F~~~~dp~f~~~~~~  192 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTPGC-W-LIY-PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST-KVFDPDDDPLFEHPAYS  192 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGTSE-E-EEE-EEETTEEEEEETTSCEEEEEETSTSSEEEEEE-EESSTTTS-B-S--EEE
T ss_pred             CCeEEEEECCCCceeeeecCCCE-E-EEE-ecCCCceEEEecCCceEEEEECCCCCEeEeec-cccCCCCcccccccceE
Confidence            45566666665554333221111 1 111 22223355556788899888884444332222 122221      12233


Q ss_pred             ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC---------CCCc---eeEEEeCCCCeEEEEecCC--------CceE
Q psy8875         556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY---------LDEP---RSLALNPIDGWMYWSDWGQ--------NAKI  615 (734)
Q Consensus       556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~---------l~~P---~~iavD~~~g~LYwtd~~~--------~~~I  615 (734)
                      ..++++||+.. .+.|+.+++.|...+....-.         .-.|   .-+|+++..++||+.....        ...|
T Consensus       193 ~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteV  271 (342)
T PF06433_consen  193 RDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEV  271 (342)
T ss_dssp             TTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEE
T ss_pred             CCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEE
Confidence            35678888765 699999999988755543211         1122   3589999999999986310        1256


Q ss_pred             EEeccCCCceEEEEEcCCCCc-eeEEEecCCC-eEEEEeCCCCeEEEEe
Q psy8875         616 ERAGMDGSHRNMVIVSDIKWP-NGLTLDLVQR-RLYWVDAKLNEISSCD  662 (734)
Q Consensus       616 ~~~~ldG~~~~~lv~~~l~~P-~glavD~~~~-~LYw~D~~~~~I~~~~  662 (734)
                      |..++.-..|..-+  .+..| .+|+|..... +||-++...+.|..++
T Consensus       272 Wv~D~~t~krv~Ri--~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  272 WVYDLKTHKRVARI--PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEETTTTEEEEEE--EEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeEEEEE--eCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            66666544332222  12222 2555543333 4555555555566555

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.72  E-value=2.3  Score=49.26  Aligned_cols=187  Identities=9%  Similarity=0.031  Sum_probs=100.1

Q ss_pred             ceEEEeeeccCCeEEEEEe-------CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC---------
Q psy8875         504 SATAIDFVFRTGMIFWSDI-------SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH---------  567 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~-------~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~---------  567 (734)
                      .+...++.+..+++.++..       ....|+.+... +..+.+.....   ...-..++.++.|+++..+         
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~~---~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGHS---LTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCCC---CCCceECCCCCceEEEecCcceEEEecc
Confidence            4556666766777666542       23467777754 33333322211   3334555555656555322         


Q ss_pred             --CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE---eccCCCceEE----EEEcCCCC-ce
Q psy8875         568 --KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER---AGMDGSHRNM----VIVSDIKW-PN  637 (734)
Q Consensus       568 --~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~---~~ldG~~~~~----lv~~~l~~-P~  637 (734)
                        .+.|++..+++...+.   ..-..+..+.+.|...+|.++-.   ++|+.   ...++..+++    .+...+.. +.
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeecccCCccc
Confidence              2344444444432221   11235788999888888877762   45665   3333333322    02223332 45


Q ss_pred             eEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEe
Q psy8875         638 GLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       638 glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~  705 (734)
                      .|++- .++.|++... ....|+.+.+||...+.+..  ..+..| .+|+-..+.||++|..  .++...
T Consensus       501 ~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~--~n~~~~v~~vaa~~~~iyv~~~~--g~~~l~  565 (591)
T PRK13616        501 SLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPS--RNLSAPVVAVAASPSTVYVTDAR--AVLQLP  565 (591)
T ss_pred             cceEe-cCCEEEEEecCCCCceEEEecCCccccccCC--CCccCceEEEecCCceEEEEcCC--ceEEec
Confidence            56653 3555766543 33569999999998775432  223333 4555566789999876  355553

>PTZ00421 coronin; Provisional

Probab=95.52  E-value=5.8  Score=44.97  Aligned_cols=209  Identities=11%  Similarity=0.020  Sum_probs=110.9

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+..|+|++..+.++++-...+.|...++..+.... .+......+..|++.+ .+.++++-...+.|.+.++....
T Consensus       124 H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~  201 (493)
T PTZ00421        124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGT  201 (493)
T ss_pred             CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCc
Confidence            345677899998766677776677888888887543322 2322334567788775 45666777778899999886433


Q ss_pred             e-EEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCc-eEEEEEcCC-CCceeEEEecCCCeEEEEeCCC
Q psy8875         581 R-KVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSH-RNMVIVSDI-KWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       581 ~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~-~~~lv~~~l-~~P~glavD~~~~~LYw~D~~~  655 (734)
                      . ..+..........+...+..+.|+-+...  ..+.|...++.... ...++.... ....-..+|+....||.+-.+.
T Consensus       202 ~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgD  281 (493)
T PTZ00421        202 IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGE  281 (493)
T ss_pred             EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCC
Confidence            2 22221111122334445545555543321  12455555553221 111111111 1112234676677788776567


Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +.|...++...........  ....| .|+++.-.+.  .|.....|.|+-+.+.+.++.|
T Consensus       282 g~Iriwdl~~~~~~~~~~~--~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~~i~pi  338 (493)
T PTZ00421        282 GNIRCFELMNERLTFCSSY--SSVEPHKGLCMMPKWS--LDTRKCEIARFYALTYHSLYTI  338 (493)
T ss_pred             CeEEEEEeeCCceEEEeec--cCCCCCcceEeccccc--ccccceeeeEEEEecCCeEEEE
Confidence            7888888765443322211  11222 3555543322  4455556666666665555544

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=95.39  E-value=5.2  Score=43.59  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=41.7

Q ss_pred             CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875         645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLT  713 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~  713 (734)
                      +++||.+.. .+.|..+++......-...    ...+..+++.+++||+.+. .+.|+.+++.+|+.+.
T Consensus       241 ~~~vy~~~~-~g~l~a~d~~tG~~~W~~~----~~~~~~p~~~~~~vyv~~~-~G~l~~~d~~tG~~~W  303 (377)
T TIGR03300       241 GGQVYAVSY-QGRVAALDLRSGRVLWKRD----ASSYQGPAVDDNRLYVTDA-DGVVVALDRRSGSELW  303 (377)
T ss_pred             CCEEEEEEc-CCEEEEEECCCCcEEEeec----cCCccCceEeCCEEEEECC-CCeEEEEECCCCcEEE
Confidence            678998775 4678888875332221111    2234455678999999874 4789999988887553

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=95.38  E-value=0.013  Score=59.19  Aligned_cols=43  Identities=28%  Similarity=0.742  Sum_probs=37.1

Q ss_pred             CCCccccccCcCC-CCCcccceeccCCceEEecCCCeeeCCCCC
Q psy8875         423 NRHTCIDIDECET-PGSCSQICLNEKGGFKCECVAGYIKDPHHP  465 (734)
Q Consensus       423 ~~~~C~~~~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~  465 (734)
                      .++.|.+++||.. +..|.|.|.++.|+|.|.|++||.+..+.+
T Consensus       180 ~~~~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~~  223 (224)
T cd01475         180 QGKICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNK  223 (224)
T ss_pred             ccccCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCCCCC
Confidence            5788999999974 467999999999999999999999876643

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=95.35  E-value=0.017  Score=40.20  Aligned_cols=31  Identities=45%  Similarity=1.181  Sum_probs=25.4

Q ss_pred             cccCcCCCCCccc--ceeccCCceEEecCCCee
Q psy8875         429 DIDECETPGSCSQ--ICLNEKGGFKCECVAGYI  459 (734)
Q Consensus       429 ~~~eC~~~~~C~~--~C~n~~g~~~C~C~~gy~  459 (734)
                      +++||....+|.+  +|+++.++|.|.|++||.
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~   33 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT   33 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCc
Confidence            3677765356765  899999999999999998

>PRK02888 nitrous-oxide reductase; Validated

Probab=95.30  E-value=1.4  Score=50.37  Aligned_cols=134  Identities=15%  Similarity=0.117  Sum_probs=84.3

Q ss_pred             CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc---------eEEEEc--CCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM---------RKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQNAK  614 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~---------~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~~~~  614 (734)
                      ...|.||++.+.++.||.+......|.+.++....         +.+++.  .....|...++|.. |+.|.|-.-. +.
T Consensus       320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf~d-sq  397 (635)
T PRK02888        320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLFLD-SQ  397 (635)
T ss_pred             CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEeec-ce
Confidence            46899999999999999999999999998875422         223332  23568999999975 6788886432 56


Q ss_pred             EEEeccC-------CCceEEEEEc--------CCCCceeEEEecCCCeEEEEeCC------------CCeEEEEecCCCc
Q psy8875         615 IERAGMD-------GSHRNMVIVS--------DIKWPNGLTLDLVQRRLYWVDAK------------LNEISSCDYNGGN  667 (734)
Q Consensus       615 I~~~~ld-------G~~~~~lv~~--------~l~~P~glavD~~~~~LYw~D~~------------~~~I~~~~~dG~~  667 (734)
                      |.+.+++       |.....++..        .+..+.|=+.++.++.|+...-.            -..-+.+++.|..
T Consensus       398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pen~qlidIsgdk  477 (635)
T PRK02888        398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLPVGPLHPENDQLIDISGDK  477 (635)
T ss_pred             eEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccCCCCCCCCcceeEEccCCe
Confidence            6666654       3332233321        12334455557667777655311            1133566777887


Q ss_pred             eEEEEcCCCCCCCCe
Q psy8875         668 RRLVLYSPQTLSHPF  682 (734)
Q Consensus       668 ~~~i~~~~~~~~~P~  682 (734)
                      .+.|...+ .+..|.
T Consensus       478 M~lv~d~p-~~~EPH  491 (635)
T PRK02888        478 MKLVHDGP-TFAEPH  491 (635)
T ss_pred             eEEEecCC-CCCCCc
Confidence            77776543 345553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.23  E-value=2.3  Score=42.69  Aligned_cols=145  Identities=13%  Similarity=0.100  Sum_probs=78.1

Q ss_pred             cCCcEEEEeCCCCeEEEEeC-CCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEec-cCCCceEEEEEcC-
Q psy8875         557 IYSHIYWTDAHKNTIELANF-EGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG-MDGSHRNMVIVSD-  632 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~l-dG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~-ldG~~~~~lv~~~-  632 (734)
                      ..++||+++ ..+.|+..+. +|+..-..- ...+..+  .++  ..+.||+...  .++|+..+ .+|.....+.... 
T Consensus        35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~--~~~l~~~d~~tG~~~W~~~~~~~  107 (238)
T PF13360_consen   35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS--DGSLYALDAKTGKVLWSIYLTSS  107 (238)
T ss_dssp             ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET--TSEEEEEETTTSCEEEEEEE-SS
T ss_pred             eCCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc--eeeeEecccCCcceeeeeccccc
Confidence            367777774 4577888876 554332222 1122222  233  3678888873  34788888 5666555432211 


Q ss_pred             ----CCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCC--------eEEEEECCEEEEEeCCCC
Q psy8875         633 ----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHP--------FSISTFEDWLYWSDWQQK  699 (734)
Q Consensus       633 ----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P--------~gl~v~~~~lywtd~~~~  699 (734)
                          +..+..++++  +++||+... .+.|..+++. |..+-...........+        ..+.+.++.||++.....
T Consensus       108 ~~~~~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~  184 (238)
T PF13360_consen  108 PPAGVRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR  184 (238)
T ss_dssp             CTCSTB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS
T ss_pred             cccccccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe
Confidence                2223344443  778887775 5678888855 43322222111111111        233445689999887644


Q ss_pred             ceEEEeccCCCce
Q psy8875         700 AIYKANKFTGDNL  712 (734)
Q Consensus       700 ~v~~~~~~~G~~~  712 (734)
                       ++.++..+|+.+
T Consensus       185 -~~~~d~~tg~~~  196 (238)
T PF13360_consen  185 -VVAVDLATGEKL  196 (238)
T ss_dssp             -EEEEETTTTEEE
T ss_pred             -EEEEECCCCCEE
Confidence             677788888744

...

>KOG2397|consensus

Probab=95.21  E-value=0.018  Score=62.00  Aligned_cols=69  Identities=36%  Similarity=0.664  Sum_probs=58.5

Q ss_pred             CceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCC----CceEeCccccCCCCCCCCCCCCCC
Q psy8875          97 EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGN----NRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus        97 ~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~----g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|.|.++ ..=|+...+-|...||.||+||..  ...|+...|.|.|    ..=|+.+.+=||..||-|||||..
T Consensus        43 ~~~~CLdg-s~~i~f~qlNDd~CDC~DGsDEPG--tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   43 SMFKCLDG-SKTISFSQLNDDSCDCLDGSDEPG--TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             cceeeccC-CcccCHHHhccccccCCCCCCCCc--cccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence            35888887 367888889999999999999953  3468889999987    367899999999999999999976

>KOG0315|consensus

Probab=95.18  E-value=3.8  Score=40.86  Aligned_cols=233  Identities=10%  Similarity=0.038  Sum_probs=125.8

Q ss_pred             eeeeeeccceEEeecCCCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL  552 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl  552 (734)
                      +|..+....||..++...+...+.   ...+++.+|.|......+| +....+.+..-++..-.-+. .+. -...+..|
T Consensus        54 ~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR-~~~-~~spVn~v  130 (311)
T KOG0315|consen   54 DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQR-NYQ-HNSPVNTV  130 (311)
T ss_pred             hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEE-ecCCCceEEEEeccCcccch-hcc-CCCCcceE
Confidence            344455567788887765543332   2347888888886555555 54556666666655311111 122 12445678


Q ss_pred             eeeccCCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEE
Q psy8875         553 AVDWIYSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIV  630 (734)
Q Consensus       553 AvD~~~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~  630 (734)
                      .+.+....|+..|. ++.|.+.++.... ...++.+.....+.|+|+|...+|--+.  ..+..++-+|-+ .....++.
T Consensus       131 vlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~P  207 (311)
T KOG0315|consen  131 VLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELEP  207 (311)
T ss_pred             EecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccCCCccccceE
Confidence            88988889998887 5889999986653 3445556667789999998655444443  235555544432 22222211


Q ss_pred             -cCC--CCceeEE--EecCCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEE
Q psy8875         631 -SDI--KWPNGLT--LDLVQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYK  703 (734)
Q Consensus       631 -~~l--~~P~gla--vD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~  703 (734)
                       .++  +.-.+|.  +.+..+ ...+-+..+.+...+.++- ..+..+...  -.+-.+-++.. +...+|-...+.+.-
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k-~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rl  284 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVK-YLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARL  284 (311)
T ss_pred             hhheecccceEEEEEECCCCc-EEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceee
Confidence             122  2223333  443333 3334444556666666665 333344332  24555666643 333334333344444


Q ss_pred             EeccCCCceEEEec
Q psy8875         704 ANKFTGDNLTAITG  717 (734)
Q Consensus       704 ~~~~~G~~~~~l~~  717 (734)
                      -+..+|+.+.....
T Consensus       285 W~~~~~k~v~qy~g  298 (311)
T KOG0315|consen  285 WDLSAGKEVRQYQG  298 (311)
T ss_pred             cccccCceeeecCC
Confidence            45556666555543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.15  E-value=3.5  Score=45.33  Aligned_cols=105  Identities=16%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCC-C
Q psy8875         601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTL-S  679 (734)
Q Consensus       601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~-~  679 (734)
                      .+.||++..  .+.++..++....  ++....+..+..+++  .+++||+.+. .++|..++......  +-...... .
T Consensus       256 ~~~vy~~~~--~g~l~ald~~tG~--~~W~~~~~~~~~~~~--~~~~vy~~~~-~g~l~ald~~tG~~--~W~~~~~~~~  326 (394)
T PRK11138        256 GGVVYALAY--NGNLVALDLRSGQ--IVWKREYGSVNDFAV--DGGRIYLVDQ-NDRVYALDTRGGVE--LWSQSDLLHR  326 (394)
T ss_pred             CCEEEEEEc--CCeEEEEECCCCC--EEEeecCCCccCcEE--ECCEEEEEcC-CCeEEEEECCCCcE--EEcccccCCC
Confidence            578888764  3567776664222  222233334445555  4889999874 47888888754332  21111100 1


Q ss_pred             CCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       680 ~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ...+.++.+++||+.+.. +.|+.++..+|+.+...
T Consensus       327 ~~~sp~v~~g~l~v~~~~-G~l~~ld~~tG~~~~~~  361 (394)
T PRK11138        327 LLTAPVLYNGYLVVGDSE-GYLHWINREDGRFVAQQ  361 (394)
T ss_pred             cccCCEEECCEEEEEeCC-CEEEEEECCCCCEEEEE
Confidence            112345678999998764 67888998899876554

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.02  E-value=4.2  Score=44.97  Aligned_cols=221  Identities=12%  Similarity=0.170  Sum_probs=114.4

Q ss_pred             ceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCC----------CcEEEEecCCCCce-EEEEeCCCCCcc-
Q psy8875         484 DIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISE----------KKIYKAPIDEGSER-TVVIEEDKTIAD-  550 (734)
Q Consensus       484 ~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~----------~~I~~~~l~~g~~~-~~~~~~~~~~p~-  550 (734)
                      .|+.+++....... .+... ....+.|......+|++....          ..|++..+..+... .+++. ....+. 
T Consensus       151 ~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe-~~~~~~~  228 (414)
T PF02897_consen  151 TLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE-EPDEPFW  228 (414)
T ss_dssp             EEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTS
T ss_pred             EEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe-ecCCCcE
Confidence            36666675543211 11111 222388887777888887543          34788777644333 34443 333343 


Q ss_pred             --ceeeeccCCcEEEEeCC--C-CeEEEEeCCCC-----ceEEEEcCCCCCceeEEEeCCCCeEEE-EecC-CCceEEEe
Q psy8875         551 --GLAVDWIYSHIYWTDAH--K-NTIELANFEGT-----MRKVLVRSYLDEPRSLALNPIDGWMYW-SDWG-QNAKIERA  618 (734)
Q Consensus       551 --glAvD~~~~~lY~td~~--~-~~I~~~~ldG~-----~~~~l~~~~l~~P~~iavD~~~g~LYw-td~~-~~~~I~~~  618 (734)
                        ++.+...++.|++.-..  . ..|+.++++..     ..+.|.. ....-.. .++..++.+|+ |+.+ ...+|.++
T Consensus       229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~-~v~~~~~~~yi~Tn~~a~~~~l~~~  306 (414)
T PF02897_consen  229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEY-YVDHHGDRLYILTNDDAPNGRLVAV  306 (414)
T ss_dssp             EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EE-EEEEETTEEEEEE-TT-TT-EEEEE
T ss_pred             EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEE-EEEccCCEEEEeeCCCCCCcEEEEe
Confidence              56666666777765433  3 46888888763     3333332 2222222 23334676665 4433 34799999


Q ss_pred             ccCCCc---eE-EEEEcCC-CCceeEEEecCCCeEEEEeC--CCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEE--EC
Q psy8875         619 GMDGSH---RN-MVIVSDI-KWPNGLTLDLVQRRLYWVDA--KLNEISSCDYN-GGNRRLVLYSPQTLSHPFSIST--FE  688 (734)
Q Consensus       619 ~ldG~~---~~-~lv~~~l-~~P~glavD~~~~~LYw~D~--~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v--~~  688 (734)
                      +++...   .. +++...- ....++.+  .+++|++...  ...+|..++++ +.....+...  ....-.++..  ..
T Consensus       307 ~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p--~~g~v~~~~~~~~~  382 (414)
T PF02897_consen  307 DLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLP--EAGSVSGVSGDFDS  382 (414)
T ss_dssp             ETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESS--SSSEEEEEES-TT-
T ss_pred             cccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCC--cceEEeccCCCCCC
Confidence            987655   23 4443322 23455555  5888888854  44588999998 5544444321  1111122221  34


Q ss_pred             CEEEEEe--C-CCCceEEEeccCCCce
Q psy8875         689 DWLYWSD--W-QQKAIYKANKFTGDNL  712 (734)
Q Consensus       689 ~~lywtd--~-~~~~v~~~~~~~G~~~  712 (734)
                      +.|+++-  + .-..|++++..+|+..
T Consensus       383 ~~~~~~~ss~~~P~~~y~~d~~t~~~~  409 (414)
T PF02897_consen  383 DELRFSYSSFTTPPTVYRYDLATGELT  409 (414)
T ss_dssp             SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred             CEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence            5555543  2 2346888887777643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=1.8  Score=42.10  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=87.7

Q ss_pred             cceEEeecCCCceEE---EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         483 HDIRKISLDHHEMTA---IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~---l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      ..|++.++++.....   +.+...-..|+..-  .+.+|...+..+.-++++.+.  ..++-.-.-...-.||+-|  ..
T Consensus        68 S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~--gd~~y~LTw~egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d--~~  141 (262)
T COG3823          68 SKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL--GDYFYQLTWKEGVAFKYDADT--LEELGRFSYEGEGWGLTSD--DK  141 (262)
T ss_pred             ceeEEEeccCceEEEEeecCCccccccceeec--cceEEEEEeccceeEEEChHH--hhhhcccccCCcceeeecC--Cc
Confidence            457777777443221   11111122334322  667777777777777776652  1111000011233466666  34


Q ss_pred             cEEEEeCCCCeEEEEeCCC--CceEEEEcC---CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875         560 HIYWTDAHKNTIELANFEG--TMRKVLVRS---YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV----  630 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG--~~~~~l~~~---~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~----  630 (734)
                      +|..+| ++..+...+...  ...++.+..   .+..-+-  +-+..|.||---|- ..+|.|++.+.......+.    
T Consensus       142 ~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE--LE~VdG~lyANVw~-t~~I~rI~p~sGrV~~widlS~L  217 (262)
T COG3823         142 NLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE--LEWVDGELYANVWQ-TTRIARIDPDSGRVVAWIDLSGL  217 (262)
T ss_pred             ceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccc--eeeeccEEEEeeee-ecceEEEcCCCCcEEEEEEccCC
Confidence            444444 344454444321  111111111   1111122  23356777766664 3578887776544433322    


Q ss_pred             --------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         631 --------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       631 --------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                              .+...+||||.|+..+|+|++--.-..++-+.+++
T Consensus       218 ~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~  260 (262)
T COG3823         218 LKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE  260 (262)
T ss_pred             chhcCccccccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence                    22346899999999999999976556666666554

>KOG0279|consensus

Probab=94.93  E-value=4.9  Score=40.77  Aligned_cols=206  Identities=11%  Similarity=0.044  Sum_probs=124.4

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      +.+++.-.....+|++-.....|+..++.....    ....+..-.....++++- ..++..++-+..+.++..++.+..
T Consensus        18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~   96 (315)
T KOG0279|consen   18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLATGE   96 (315)
T ss_pred             EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEc-cCCceEEeccccceEEEEEecCCc
Confidence            344444444455555555556666555542211    111122223456677776 446677777778899999998866


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeC-CCCeE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDA-KLNEI  658 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~-~~~~I  658 (734)
                      .+..+.+......++|+++.+ +..++-.. ...|...+.-|.-.-++.... -.|.+-+.+.|.+...|++.. ..+.|
T Consensus        97 ~t~~f~GH~~dVlsva~s~dn-~qivSGSr-DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv  174 (315)
T KOG0279|consen   97 STRRFVGHTKDVLSVAFSTDN-RQIVSGSR-DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV  174 (315)
T ss_pred             EEEEEEecCCceEEEEecCCC-ceeecCCC-cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence            666666777788999999854 44455433 356666666666555555444 677888888877655665554 45567


Q ss_pred             EEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         659 SSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ..-++++-..+.-+.+  .-..-..+++ -.|.|-.+-.+.+.++-.+...|+....+
T Consensus       175 KvWnl~~~~l~~~~~g--h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  175 KVWNLRNCQLRTTFIG--HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             EEEccCCcchhhcccc--ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            7778887665544332  2334455666 45666666555666666666666665544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.87  E-value=2.3  Score=46.11  Aligned_cols=93  Identities=15%  Similarity=0.212  Sum_probs=58.1

Q ss_pred             eeEEEe-CCCC-eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC----CCeEEEEecC-C
Q psy8875         593 RSLALN-PIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK----LNEISSCDYN-G  665 (734)
Q Consensus       593 ~~iavD-~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~----~~~I~~~~~d-G  665 (734)
                      ..+.+- +..+ +|++++...-.+|+..+++|...+.|.......-.-+.+|..+++||++-..    ...|++++++ +
T Consensus       238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             cccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            344442 3344 4555553334699999999987665544443332458889999999999654    5589999999 7


Q ss_pred             CceEEEEcCCCCCCCCeEEEEEC
Q psy8875         666 GNRRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       666 ~~~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      +..+.|...  ...+ +.+++..
T Consensus       318 ~~~~~LT~~--~~~~-~~~~~Sp  337 (353)
T PF00930_consen  318 GEPKCLTCE--DGDH-YSASFSP  337 (353)
T ss_dssp             TEEEESSTT--SSTT-EEEEE-T
T ss_pred             CCeEeccCC--CCCc-eEEEECC
Confidence            777665432  2223 5566643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=94.85  E-value=1.2  Score=51.12  Aligned_cols=42  Identities=14%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEeccc-ccCCCcc
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-QTHEPLN  726 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-~l~~P~~  726 (734)
                      |+..++.+|+ -...+.|+.++..||+.+-...... ....|+.
T Consensus       468 l~t~g~lvf~-g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~t  510 (527)
T TIGR03075       468 LATAGDLVFY-GTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVT  510 (527)
T ss_pred             eEECCcEEEE-ECCCCeEEEEECCCCCEeEEEeCCCCceecCEE
Confidence            4445554444 4456789999999998876654322 2334554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>smart00181 EGF Epidermal growth factor-like domain

Probab=94.79  E-value=0.025  Score=38.38  Aligned_cols=24  Identities=38%  Similarity=1.041  Sum_probs=19.2

Q ss_pred             CCCcC-ccccCCCcceeecCCCcEe
Q psy8875         397 GGCLH-KCVDLPVGYMCECNEGYKL  420 (734)
Q Consensus       397 ~~C~~-~C~~~~~~~~C~C~~G~~l  420 (734)
                      ..|.+ .|+++.++|+|.|++||.+
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g   30 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTG   30 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCcc
Confidence            35655 7888889999999999865

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.75  E-value=2.5  Score=45.53  Aligned_cols=154  Identities=16%  Similarity=0.208  Sum_probs=72.8

Q ss_pred             ccccceeeeee---ccceEEeecCCCceEEEecCC-cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CC
Q psy8875         471 AEGHASLLFAR---KHDIRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-ED  545 (734)
Q Consensus       471 ~~~~~~l~~~~---~~~I~~i~l~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~  545 (734)
                      .++..+|+.++   ...++.++|...+.++|.... ....+.-+.+....|||.. ....|++++|.....+ ++.. ..
T Consensus        45 ~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~-~vy~~p~  122 (386)
T PF14583_consen   45 DDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEER-VVYEVPD  122 (386)
T ss_dssp             TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EE-EEEE--T
T ss_pred             CCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEE-EEEECCc
Confidence            34444555444   456899999999998887643 2222444556678887764 3467899999854433 3322 11


Q ss_pred             CCCcccee-eeccCCcEEEE-e-----------C----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875         546 KTIADGLA-VDWIYSHIYWT-D-----------A----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG  602 (734)
Q Consensus       546 ~~~p~glA-vD~~~~~lY~t-d-----------~----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g  602 (734)
                      .-...+-. ++. .+.+++. .           +          -..+|.++++.+...++|+.... +..-+-..|...
T Consensus       123 ~~~g~gt~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~-wlgH~~fsP~dp  200 (386)
T PF14583_consen  123 DWKGYGTWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTD-WLGHVQFSPTDP  200 (386)
T ss_dssp             TEEEEEEEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS--EEEEEEETTEE
T ss_pred             ccccccceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCc-cccCcccCCCCC
Confidence            11111222 121 1222221 1           0          02478999998888888875432 222333333322


Q ss_pred             -eEEEEe---cCC-CceEEEeccCCCceEEE
Q psy8875         603 -WMYWSD---WGQ-NAKIERAGMDGSHRNMV  628 (734)
Q Consensus       603 -~LYwtd---~~~-~~~I~~~~ldG~~~~~l  628 (734)
                       .|-+.-   |.. ..+||.+++||++.+.+
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v  231 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKV  231 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEETTS---EES
T ss_pred             CEEEEeccCCcceeceEEEEEEcCCCcceee
Confidence             233332   222 24999999999987765

>KOG4649|consensus

Probab=94.70  E-value=0.91  Score=45.42  Aligned_cols=139  Identities=17%  Similarity=0.085  Sum_probs=77.7

Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      ..-.-+|||+.+|+|||-..-..||+-..       .++ ++.     ++|--.+|.||+.+.....+||....-++...
T Consensus        31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa-------~vv-gdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~   97 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAILGVRIECSA-------IVV-GDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV   97 (354)
T ss_pred             CCceEEEecCCCCcEEeehhhCceeeeee-------EEE-CCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc
Confidence            34456899999999999877677776432       122 222     66666789999999765557777654433211


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC---CCCCCCCeEEEEECCEEEEEeCCCCceEE
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS---PQTLSHPFSISTFEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~---~~~~~~P~gl~v~~~~lywtd~~~~~v~~  703 (734)
                                 .-.+|+.++.||-. +..+..+.+|+....  -+..+   ......| .|+.-.+.||++-.. ++|.+
T Consensus        98 -----------~a~~d~~~glIycg-shd~~~yalD~~~~~--cVykskcgG~~f~sP-~i~~g~~sly~a~t~-G~vla  161 (354)
T KOG4649|consen   98 -----------RAQCDFDGGLIYCG-SHDGNFYALDPKTYG--CVYKSKCGGGTFVSP-VIAPGDGSLYAAITA-GAVLA  161 (354)
T ss_pred             -----------ceEEcCCCceEEEe-cCCCcEEEecccccc--eEEecccCCceeccc-eecCCCceEEEEecc-ceEEE
Confidence                       11244444444332 333444444432211  11110   0111223 245556789998765 78888


Q ss_pred             EeccCCCceEE
Q psy8875         704 ANKFTGDNLTA  714 (734)
Q Consensus       704 ~~~~~G~~~~~  714 (734)
                      +++.++...+.
T Consensus       162 vt~~~~~~~~~  172 (354)
T KOG4649|consen  162 VTKNPYSSTEF  172 (354)
T ss_pred             EccCCCCccee
Confidence            88877754433

>PTZ00420 coronin; Provisional

Probab=94.44  E-value=12  Score=43.08  Aligned_cols=120  Identities=13%  Similarity=0.067  Sum_probs=74.4

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL  573 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~  573 (734)
                      ....+..|+|++..+.++.+-...+.|+..++..+..       ....+......+..|++.+....|+.+-...+.|.+
T Consensus        73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI  152 (568)
T PTZ00420         73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI  152 (568)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence            3456788999886566666666778887777753321       111222233456788888877777777666789999


Q ss_pred             EeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         574 ANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       574 ~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      .++........+. ....+..|++++. |.++.+.. ....|...++...
T Consensus       153 WDl~tg~~~~~i~-~~~~V~Slswspd-G~lLat~s-~D~~IrIwD~Rsg  199 (568)
T PTZ00420        153 WDIENEKRAFQIN-MPKKLSSLKWNIK-GNLLSGTC-VGKHMHIIDPRKQ  199 (568)
T ss_pred             EECCCCcEEEEEe-cCCcEEEEEECCC-CCEEEEEe-cCCEEEEEECCCC
Confidence            9987554333222 2345788999885 44544432 2356666666543

>KOG4328|consensus

Probab=94.33  E-value=1.5  Score=47.17  Aligned_cols=160  Identities=13%  Similarity=0.088  Sum_probs=88.5

Q ss_pred             CCcceEEEeeeccCC-eEEEEEeCCCcEEEEecCC--CCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875         501 STKSATAIDFVFRTG-MIFWSDISEKKIYKAPIDE--GSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF  576 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l~~--g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l  576 (734)
                      ...++.+++|+|... +|..+....+.|...++++  ... ..++.......+.+|.+-+.+-..+++-+..+.|...++
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~  264 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF  264 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence            456788999999887 6666665677888877741  111 222222222234455555544433333344555665565


Q ss_pred             CCCceEEEEcC--CCCCceeEEEeCCCCeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         577 EGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       577 dG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      .+...++++..  ....-.++-+....+.+|+.+ +| .-.++-..++|+....+...+. ...+|++.+....++.+-+
T Consensus       265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~~laT~s  342 (498)
T KOG4328|consen  265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLRLHKK-KITSVALNPVCPWFLATAS  342 (498)
T ss_pred             cchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhhhhhc-ccceeecCCCCchheeecc
Confidence            55544444432  223445566666667666665 44 3455555667774433222222 5678999887777666644


Q ss_pred             C--CCeEEEEe
Q psy8875         654 K--LNEISSCD  662 (734)
Q Consensus       654 ~--~~~I~~~~  662 (734)
                      .  +.+||-++
T Consensus       343 ~D~T~kIWD~R  353 (498)
T KOG4328|consen  343 LDQTAKIWDLR  353 (498)
T ss_pred             cCcceeeeehh
Confidence            3  34566555

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.30  E-value=0.38  Score=51.59  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCe
Q psy8875         603 WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF  682 (734)
Q Consensus       603 ~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~  682 (734)
                      .||.++......++.++|+....+.|.........|..+.+....||+... ...|++++++....++|+..+.... ..
T Consensus        50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p~~~~-g~  127 (386)
T PF14583_consen   50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVPDDWK-GY  127 (386)
T ss_dssp             EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--TTEE-EE
T ss_pred             EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECCcccc-cc
Confidence            466666555678889889887777666543333446677778888877653 3589999999988877765432211 11


Q ss_pred             EEEE--ECCEEEEE------------eCC----------CCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         683 SIST--FEDWLYWS------------DWQ----------QKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       683 gl~v--~~~~lywt------------d~~----------~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +-.+  .++.+++.            +|.          ..+|++|+..+|+...++.....|.|++.-|
T Consensus       128 gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  128 GTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             EEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             cceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            2221  22333322            111          1368999999999888888877788877655

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=94.24  E-value=0.047  Score=37.41  Aligned_cols=30  Identities=40%  Similarity=0.928  Sum_probs=21.6

Q ss_pred             ccccccCCCCC--cCccccCCCcceeecCCCcE
Q psy8875         389 VDECAKDNGGC--LHKCVDLPVGYMCECNEGYK  419 (734)
Q Consensus       389 ~~eC~~~~~~C--~~~C~~~~~~~~C~C~~G~~  419 (734)
                      +++|... ..|  .+.|.+.+++|.|.|++||.
T Consensus         2 ~~~C~~~-~~C~~~~~C~~~~~~~~C~C~~g~~   33 (38)
T cd00054           2 IDECASG-NPCQNGGTCVNTVGSYRCSCPPGYT   33 (38)
T ss_pred             cccCCCC-CCcCCCCEeECCCCCeEeECCCCCc
Confidence            4556531 234  45799999999999999994

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG0286|consensus

Probab=94.20  E-value=7.5  Score=39.75  Aligned_cols=156  Identities=13%  Similarity=0.116  Sum_probs=103.5

Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      ..-.+|-++..+....++....+...+.+......+|+|.|.+++.|++-.- ...+||-+. +|.-++.+. ..-.-.|
T Consensus       156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R-~~~c~qtF~-ghesDIN  233 (343)
T KOG0286|consen  156 DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR-SGQCVQTFE-GHESDIN  233 (343)
T ss_pred             CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc-CcceeEeec-ccccccc
Confidence            4455677777788888887777777777888899999999999999999632 224555433 333344332 3333345


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .+.+ +.++.-|.+-+..+....+++.......+++....+.-..++++ ..|+|.++-+....+..-+.+.|+.+.+|.
T Consensus       234 sv~f-fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~  312 (343)
T KOG0286|consen  234 SVRF-FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLA  312 (343)
T ss_pred             eEEE-ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEee
Confidence            6666 34556666766677777777765444444443333333356777 578888887777788888888888877776


Q ss_pred             c
Q psy8875         717 G  717 (734)
Q Consensus       717 ~  717 (734)
                      +
T Consensus       313 G  313 (343)
T KOG0286|consen  313 G  313 (343)
T ss_pred             c
Confidence            4

>KOG0266|consensus

Probab=94.10  E-value=12  Score=41.95  Aligned_cols=206  Identities=12%  Similarity=0.054  Sum_probs=108.6

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CC-C
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EG-T  579 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG-~  579 (734)
                      ..+..++|.+.... .++-...+.|+...+..+.. ....+..-...+..+++-+. +.+.++-+...+|.+.++ +. .
T Consensus       160 ~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             CceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccCCCe
Confidence            34445666654444 44444445555544432221 11111223344567777654 445566666778888777 43 4


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ..+++. +......++++.|.. .+..+-.. ...|..-++.+......+...-..-+++++.. .++++++-...+.|.
T Consensus       238 ~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~-D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  238 NLKTLK-GHSTYVTSVAFSPDG-NLLVSGSD-DGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIR  313 (456)
T ss_pred             EEEEec-CCCCceEEEEecCCC-CEEEEecC-CCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEE
Confidence            444444 666677999999987 56655432 34555555544333333444444567888874 555555657788999


Q ss_pred             EEecCCCceE--EEEcCCCCCCCCeE-EEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         660 SCDYNGGNRR--LVLYSPQTLSHPFS-ISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       660 ~~~~dG~~~~--~i~~~~~~~~~P~g-l~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ..++.+....  ..+....... |.. +.+. ++...|+-...+.|...+...+......
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             EEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            9898776632  2332222222 443 3332 3444444444445544444444443333

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.06  E-value=8.7  Score=42.20  Aligned_cols=62  Identities=13%  Similarity=0.135  Sum_probs=41.2

Q ss_pred             CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCce
Q psy8875         645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      +++||++.. .+.+..+++......  -..  .+..+..+++.+++||+.+.. +.|+.++..+|+.+
T Consensus       256 ~~~vy~~~~-~g~l~ald~~tG~~~--W~~--~~~~~~~~~~~~~~vy~~~~~-g~l~ald~~tG~~~  317 (394)
T PRK11138        256 GGVVYALAY-NGNLVALDLRSGQIV--WKR--EYGSVNDFAVDGGRIYLVDQN-DRVYALDTRGGVEL  317 (394)
T ss_pred             CCEEEEEEc-CCeEEEEECCCCCEE--Eee--cCCCccCcEEECCEEEEEcCC-CeEEEEECCCCcEE
Confidence            678988774 467888886543322  111  123344567789999998864 67899988888654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=94.03  E-value=0.13  Score=43.00  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=30.5

Q ss_pred             EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      +.+.+..||||++++.+++||+++...+.|..+..
T Consensus        49 va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   49 VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            44678999999999999999999999888887654

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG3509|consensus

Probab=94.01  E-value=0.04  Score=65.12  Aligned_cols=101  Identities=34%  Similarity=0.762  Sum_probs=88.1

Q ss_pred             ceecCcCccCCCCCCCCCCcccccc--cCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC----CCCccccc
Q psy8875          66 MCIPSTWVCDGQNDCPDGVDEKKCQ--KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK----NRTCQASE  139 (734)
Q Consensus        66 ~Ci~~~~~cdg~~dC~dg~de~~C~--~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~----~~~C~~~~  139 (734)
                      .|......|++..|+.+.+|+.++.  ...+.+.++.|.+  +++.-..|.||...++.++++...|.    ...|.+.+
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNN--PRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTE   79 (964)
T ss_pred             chhhhhhhhccchhhHhhcccCCCccccccCCcchhccCC--ccccCchhhhccccccCCCCCcCCccccccccccCCcc
Confidence            4667778899999999999998765  3578899999988  69999999999999999999888774    24788889


Q ss_pred             CcCCCC-ceEeCccccCCCCCCCCCCCCCC
Q psy8875         140 FRCGNN-RCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       140 f~C~~g-~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      +.|.+- ++.+.+..|+|.++|.++++|..
T Consensus        80 ~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~  109 (964)
T KOG3509|consen   80 TQCRDRLRCNPQSFQCDGTNDCKDGSDEVG  109 (964)
T ss_pred             cccccchhcCCccccccCCCCCCccchhcc
Confidence            999886 89999999999999999999965

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.92  E-value=9.7  Score=43.24  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=25.8

Q ss_pred             EEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         683 SISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       683 gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .+++.++.||+.+. .+.|+.+++.+|+.+....
T Consensus       401 ~~~~~g~~v~~g~~-dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         401 SLATAGNLVFAGAA-DGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             ceEecCCeEEEECC-CCeEEEEECCCCceeeEEE
Confidence            35678889999874 5789999999998876654

The alignment model contains an 8-bladed beta-propeller.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=93.89  E-value=20  Score=43.51  Aligned_cols=157  Identities=6%  Similarity=-0.041  Sum_probs=87.8

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      ..+.+++|.+..+.+..+-...+.|...++..+... ..+........+|++.+..+.++++-...+.|.+.++......
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~-~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~  611 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLV-TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSI  611 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEE-EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEE
Confidence            345677777654555555556777887777643322 2222233446677777667788888888889999998654332


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      ..+.. ......+++.+..+.++.+-. ..+.|...++..... ...+.........|.+.  .+..+++-+..+.|...
T Consensus       612 ~~~~~-~~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiW  687 (793)
T PLN00181        612 GTIKT-KANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLW  687 (793)
T ss_pred             EEEec-CCCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEE
Confidence            22222 234566666555666666653 346777776643221 11122222223455553  33444454455666666


Q ss_pred             ecC
Q psy8875         662 DYN  664 (734)
Q Consensus       662 ~~d  664 (734)
                      ++.
T Consensus       688 d~~  690 (793)
T PLN00181        688 DLS  690 (793)
T ss_pred             eCC
Confidence            654

>KOG0293|consensus

Probab=93.83  E-value=5  Score=42.77  Aligned_cols=210  Identities=14%  Similarity=0.094  Sum_probs=110.9

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      .....+..|.|.|...+|.-- .....+..-+.+.|..+...-.+-...+...|--+.+. =+++-+....|...++||.
T Consensus       267 gh~~~V~yi~wSPDdryLlaC-g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn  344 (519)
T KOG0293|consen  267 GHSQPVSYIMWSPDDRYLLAC-GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN  344 (519)
T ss_pred             cccCceEEEEECCCCCeEEec-CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc
Confidence            333455667788766554322 22333555555544333222111123445555544433 3667777788999999997


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ....--.-.......||+-+...+|+....  ..+|.-.+.....-+-+++.. +.-..+.|. ..+++..+....+.|.
T Consensus       345 ~~~~W~gvr~~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  345 ILGNWEGVRDPKVHDLAITYDGKYVLLVTV--DKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQDQEIH  420 (519)
T ss_pred             hhhcccccccceeEEEEEcCCCcEEEEEec--ccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcccCeeE
Confidence            632211112234568888888888888873  356666555433222233322 224577785 6777888887788888


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEE-E---CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSIST-F---EDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v-~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .-++.  .++.+..-.+.-..-+-|-- |   ++.+..+-...++|+.-++.+|+.+.+|.+
T Consensus       421 LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  421 LWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             Eeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            87776  22222110000111111111 2   223444445556677777777777666653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=93.73  E-value=12  Score=40.62  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=63.2

Q ss_pred             CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCC
Q psy8875         601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSH  680 (734)
Q Consensus       601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~  680 (734)
                      .++||.+..  .+.|+..++....  ++.......+..++++  +++||+.+ ..+.|..++.......--... .....
T Consensus       241 ~~~vy~~~~--~g~l~a~d~~tG~--~~W~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~-~~~~~  312 (377)
T TIGR03300       241 GGQVYAVSY--QGRVAALDLRSGR--VLWKRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDE-LKYRQ  312 (377)
T ss_pred             CCEEEEEEc--CCEEEEEECCCCc--EEEeeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEcccc-ccCCc
Confidence            578898874  3567777764222  2222223334455553  78999886 457899988753322111100 00011


Q ss_pred             CeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         681 PFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       681 P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ..+..+.+++||..+.. +.|+.++..+|+.+..+.
T Consensus       313 ~ssp~i~g~~l~~~~~~-G~l~~~d~~tG~~~~~~~  347 (377)
T TIGR03300       313 LTAPAVVGGYLVVGDFE-GYLHWLSREDGSFVARLK  347 (377)
T ss_pred             cccCEEECCEEEEEeCC-CEEEEEECCCCCEEEEEE
Confidence            12234578899988754 788899988898876665

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.62  E-value=14  Score=40.84  Aligned_cols=202  Identities=11%  Similarity=0.100  Sum_probs=108.7

Q ss_pred             EEeeeccCCeEEEE-EeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccC--CcEEEEeCCC----------Ce
Q psy8875         507 AIDFVFRTGMIFWS-DISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY--SHIYWTDAHK----------NT  570 (734)
Q Consensus       507 ~i~~d~~~~~lyw~-d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~--~~lY~td~~~----------~~  570 (734)
                      ++.+.+..++|-++ +...   ..|+.+++..|....-    .+..+.+-.+-|..  ..+|++....          .+
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d----~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD----GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE----EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC----cccccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            45666667766665 3322   2477778875532221    22233332244544  4677876542          34


Q ss_pred             EEEEeCCCCceE--EEEcCCCCC---ceeEEEeCCCCeEEEEecC-CC-ceEEEeccCCC----ceEEEEEcCCCCceeE
Q psy8875         571 IELANFEGTMRK--VLVRSYLDE---PRSLALNPIDGWMYWSDWG-QN-AKIERAGMDGS----HRNMVIVSDIKWPNGL  639 (734)
Q Consensus       571 I~~~~ldG~~~~--~l~~~~l~~---P~~iavD~~~g~LYwtd~~-~~-~~I~~~~ldG~----~~~~lv~~~l~~P~gl  639 (734)
                      |++..+......  +|+.. ...   -.++.+.....+|++.-.. .. ..|+.++++..    ....++......- .-
T Consensus       204 v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~  281 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV-EY  281 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EE
T ss_pred             EEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce-EE
Confidence            777777655433  44432 223   3478888888888876543 33 57888888764    2223333322211 12


Q ss_pred             EEecCCCeEEEEe---CCCCeEEEEecCCCc---eE-EEEcCCCCCCCCeEEEEECCEEEEEeCCC--CceEEEeccCCC
Q psy8875         640 TLDLVQRRLYWVD---AKLNEISSCDYNGGN---RR-LVLYSPQTLSHPFSISTFEDWLYWSDWQQ--KAIYKANKFTGD  710 (734)
Q Consensus       640 avD~~~~~LYw~D---~~~~~I~~~~~dG~~---~~-~i~~~~~~~~~P~gl~v~~~~lywtd~~~--~~v~~~~~~~G~  710 (734)
                      .++..++.+|+..   +...+|.+++++...   .. +++.. ..-....++.+++++|++....+  .+|..++...+.
T Consensus       282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~  360 (414)
T PF02897_consen  282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK  360 (414)
T ss_dssp             EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred             EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence            3445688888753   456799999988665   23 44432 22224567888999999987543  345555544244


Q ss_pred             ceEEE
Q psy8875         711 NLTAI  715 (734)
Q Consensus       711 ~~~~l  715 (734)
                      ....+
T Consensus       361 ~~~~~  365 (414)
T PF02897_consen  361 ESREI  365 (414)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            44433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4378|consensus

Probab=93.51  E-value=3.2  Score=45.15  Aligned_cols=186  Identities=8%  Similarity=0.003  Sum_probs=101.5

Q ss_pred             CCeEEEEEeCCCcEEEE-ecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCC
Q psy8875         514 TGMIFWSDISEKKIYKA-PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDE  591 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~-~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~  591 (734)
                      ...+|....+.+.++++ ++. .......+......+.++...|...+|--.. ..+-|.+..+....+.+-+ ......
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             hcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCe
Confidence            44577776665544433 332 1111111111223455666665544332222 2455666666554444333 233344


Q ss_pred             ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce-E
Q psy8875         592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-R  669 (734)
Q Consensus       592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-~  669 (734)
                      .+-|-..+..+.|..+. +..+.+...+..|.....-..+. -.--.||.+.+.+..|+++-....+|..++...... .
T Consensus       167 vRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~  245 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD  245 (673)
T ss_pred             EEEeecccccceeeEee-ccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence            45666677666666665 34567777666665433222121 222479999999999999998888999888653321 2


Q ss_pred             EEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEecc
Q psy8875         670 LVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       670 ~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~  707 (734)
                      .|+     ..+|+ .|++ ..|++..+-..+++|+..+..
T Consensus       246 ~l~-----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  246 RLT-----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             eee-----ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence            222     24565 4666 456666666667777777643

>PTZ00420 coronin; Provisional

Probab=93.45  E-value=18  Score=41.65  Aligned_cols=199  Identities=11%  Similarity=0.012  Sum_probs=103.9

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+..|+|++....++.+-...+.|...++..+..... +. ....+..|++++. +.++.+-...+.|.+.++....
T Consensus       124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-i~-~~~~V~Slswspd-G~lLat~s~D~~IrIwD~Rsg~  200 (568)
T PTZ00420        124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-IN-MPKKLSSLKWNIK-GNLLSGTCVGKHMHIIDPRKQE  200 (568)
T ss_pred             CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-Ee-cCCcEEEEEECCC-CCEEEEEecCCEEEEEECCCCc
Confidence            3456788999987766766666678888888875443222 22 2245677888765 5555665556789999886543


Q ss_pred             eEEEEcCCCCCceeEEE-----eCCCCeEEEEecCCC--ceEEEeccCC--CceEEEEEcCCCCcee--EEEecCCCeEE
Q psy8875         581 RKVLVRSYLDEPRSLAL-----NPIDGWMYWSDWGQN--AKIERAGMDG--SHRNMVIVSDIKWPNG--LTLDLVQRRLY  649 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iav-----D~~~g~LYwtd~~~~--~~I~~~~ldG--~~~~~lv~~~l~~P~g--lavD~~~~~LY  649 (734)
                      ...-+..........++     .+..++|.-+.....  ..|...++..  .....+....  .+..  ...|+..+.||
T Consensus       201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~--~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        201 IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN--ASAPLIPHYDESTGLIY  278 (568)
T ss_pred             EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC--CccceEEeeeCCCCCEE
Confidence            32222121111111222     133344444432211  2344444442  1121111111  1222  24577788999


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEEECCEEEEEeCCCCceEEEeccC
Q psy8875         650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSISTFEDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v~~~~lywtd~~~~~v~~~~~~~  708 (734)
                      .+-.+.+.|+..++.......+-.  -....| .|+++.-.+.  .|...-.|.|+-+.+
T Consensus       279 lsGkGD~tIr~~e~~~~~~~~l~~--~~s~~p~~g~~f~Pkr~--~dv~~cEi~R~~kl~  334 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSIRKVNE--YKSCSPFRSFGFLPKQI--CDVYKCEIGRVYKNE  334 (568)
T ss_pred             EEEECCCeEEEEEccCCcEEeecc--cccCCCccceEEccccc--cCchhhhHhHHhhhc
Confidence            988888888888876543333321  112223 3566654433  344445555665554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.38  E-value=14  Score=40.02  Aligned_cols=76  Identities=12%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             cCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC----CCceEEEeccCCCceEEEe
Q psy8875         643 LVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ----QKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       643 ~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~----~~~v~~~~~~~G~~~~~l~  716 (734)
                      ..++.++|.-..  ...|+.++.+|+..+.|..+.-.+....++.-.++.||++-..    ...|++++..++...+.|+
T Consensus       245 ~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT  324 (353)
T PF00930_consen  245 PDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT  324 (353)
T ss_dssp             TTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS
T ss_pred             CCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc
Confidence            345566665433  4489999999988775544332232344444467899998765    4589999865366666665


Q ss_pred             cc
Q psy8875         717 GV  718 (734)
Q Consensus       717 ~~  718 (734)
                      ..
T Consensus       325 ~~  326 (353)
T PF00930_consen  325 CE  326 (353)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1274|consensus

Probab=93.29  E-value=21  Score=42.01  Aligned_cols=159  Identities=13%  Similarity=0.126  Sum_probs=92.7

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      .+.+++..   ...|.+-...+.|.++.++.+....++... -...+.++|+ .+|++..+-+..-.|.+.+++......
T Consensus        58 ~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf-tlp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~  132 (933)
T KOG1274|consen   58 LVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDTILARF-TLPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEK  132 (933)
T ss_pred             eeEEEeec---ccceEEeeccceEEEeeCCCCCccceeeee-eccceEEEEe-cCCcEEEeecCceeEEEEeccccchhe
Confidence            44455544   235666667888999999876655555432 2245778888 455555555555677777775554444


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE--c----C-CCCceeEEEecCCCeEEEEeCCC
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV--S----D-IKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~--~----~-l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      .+.+.-....+|.+||.+.+|-.+..  .+.+...+++ |....++-.  .    . -..-.-+++.+.++.+-+.-. .
T Consensus       133 ~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d  209 (933)
T KOG1274|consen  133 VLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-D  209 (933)
T ss_pred             eecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-C
Confidence            44455556679999998888877774  3566666554 222222110  0    0 111234667776666555433 4


Q ss_pred             CeEEEEecCCCceEE
Q psy8875         656 NEISSCDYNGGNRRL  670 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~  670 (734)
                      +.|..++.+|-....
T Consensus       210 ~~Vkvy~r~~we~~f  224 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQF  224 (933)
T ss_pred             CeEEEEccCCceehe
Confidence            567777766654433

>KOG2139|consensus

Probab=93.19  E-value=3.6  Score=43.16  Aligned_cols=151  Identities=10%  Similarity=0.051  Sum_probs=84.6

Q ss_pred             ccCCeEEEEEeCCCcEEEE-ecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875         512 FRTGMIFWSDISEKKIYKA-PIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL  589 (734)
Q Consensus       512 ~~~~~lyw~d~~~~~I~~~-~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l  589 (734)
                      -+.+..+|++......-|. .+. ++. .+++...+-..+..|+-...+..|--+..+...|.+.+.+......|...++
T Consensus       160 Cr~gIciW~~s~tln~~r~~~~~-s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~gl  238 (445)
T KOG2139|consen  160 CRAGICIWSDSRTLNANRNIRMM-STHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGL  238 (445)
T ss_pred             ecceeEEEEcCcccccccccccc-cccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCC
Confidence            3567888887654322221 111 222 2222222333344555554333333333446678888888776666654555


Q ss_pred             CCceeEEEeCCCCeEEEEecCCCceEE-EeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQNAKIE-RAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~~~I~-~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ....-|...|...+||-+......+++ -..+--+.+.++...   ...+-..++.+.+|.++-.+..+|++..+++.
T Consensus       239 gg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg---rvqtacWspcGsfLLf~~sgsp~lysl~f~~~  313 (445)
T KOG2139|consen  239 GGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG---RVQTACWSPCGSFLLFACSGSPRLYSLTFDGE  313 (445)
T ss_pred             CceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC---ceeeeeecCCCCEEEEEEcCCceEEEEeecCC
Confidence            555556667766666666543333444 233333344444333   33455678889999999999999999988765

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=93.19  E-value=0.089  Score=35.99  Aligned_cols=31  Identities=39%  Similarity=1.067  Sum_probs=24.3

Q ss_pred             ccCcCCCCCc--ccceeccCCceEEecCCCeee
Q psy8875         430 IDECETPGSC--SQICLNEKGGFKCECVAGYIK  460 (734)
Q Consensus       430 ~~eC~~~~~C--~~~C~n~~g~~~C~C~~gy~~  460 (734)
                      +++|....+|  .+.|.+..++|.|.|++||.+
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g   34 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG   34 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcC
Confidence            4566543456  458999999999999999986

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG4441|consensus

Probab=93.17  E-value=8.2  Score=44.65  Aligned_cols=181  Identities=9%  Similarity=0.116  Sum_probs=107.7

Q ss_pred             eEEEeeeccCCeEEEEEeCC------CcEEEEecCCCCceEEEEeCCCCCc-cceeeeccCCcEEEEeCC-----CCeEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISE------KKIYKAPIDEGSERTVVIEEDKTIA-DGLAVDWIYSHIYWTDAH-----KNTIE  572 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~------~~I~~~~l~~g~~~~~~~~~~~~~p-~glAvD~~~~~lY~td~~-----~~~I~  572 (734)
                      ..++++.  ++.||++-..+      ..+.++++....  -..+. .+..+ .++++-...+.||..-..     ...|+
T Consensus       325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a-~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVA-PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc--eeccC-CccCccccceeEEECCEEEEEeccccccccccEE
Confidence            3455555  78999986544      356777776333  22223 33333 356666678999998654     34688


Q ss_pred             EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCc---eeEEEecC
Q psy8875         573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWP---NGLTLDLV  644 (734)
Q Consensus       573 ~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P---~glavD~~  644 (734)
                      +.+.....-..+..-. ..-.+.++-..+|+||.+--.     ...++++.+.....-+.+  ..+..+   .|+++  .
T Consensus       400 ~YDp~~~~W~~va~m~-~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~~~R~~~g~a~--~  474 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPML-TRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMNTRRSGFGVAV--L  474 (571)
T ss_pred             EecCCCCcccccCCCC-cceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcccccccceEEE--E
Confidence            8887766555443211 122344444578999999631     124677777655433322  122222   34444  6


Q ss_pred             CCeEEEEeC-----CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875         645 QRRLYWVDA-----KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       645 ~~~LYw~D~-----~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~  696 (734)
                      +++||++-.     ...+|+++++....-..+.. ........|+++.++.||+.-.
T Consensus       475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~-m~~~rs~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP-MTSPRSAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             CCEEEEECCccCCCccceEEEEcCCCCceeEccc-CccccccccEEEECCEEEEEec
Confidence            999999843     23468888887766665532 2223445678999999999853

>KOG2106|consensus

Probab=93.16  E-value=16  Score=40.17  Aligned_cols=165  Identities=16%  Similarity=0.212  Sum_probs=95.8

Q ss_pred             EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEe
Q psy8875         540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERA  618 (734)
Q Consensus       540 ~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~  618 (734)
                      +.++.....|+.||=.  .+-||+-.. .+.|..-++......++. .....--|+|+.|.. .+|.|-.. ..-+||+ 
T Consensus       323 ~elPe~~G~iRtv~e~--~~di~vGTt-rN~iL~Gt~~~~f~~~v~-gh~delwgla~hps~-~q~~T~gqdk~v~lW~-  396 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEG--KGDILVGTT-RNFILQGTLENGFTLTVQ-GHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-  396 (626)
T ss_pred             ccCchhcCCeeEEecC--CCcEEEeec-cceEEEeeecCCceEEEE-ecccceeeEEcCCCh-hheeeccCcceEEEcc-
Confidence            3334444555555543  344776655 467777777666554443 233466799999865 45555421 1224444 


Q ss_pred             ccCCCceEE-EEE-----cCCCCcee-EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCE-
Q psy8875         619 GMDGSHRNM-VIV-----SDIKWPNG-LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDW-  690 (734)
Q Consensus       619 ~ldG~~~~~-lv~-----~~l~~P~g-lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~-  690 (734)
                        +-...-. ++.     ..+ +|.| ||+-..+++.++.|..+..+..+..++....++..++  ...-++|.-.++. 
T Consensus       397 --~~k~~wt~~~~d~~~~~~f-hpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp--~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  397 --DHKLEWTKIIEDPAECADF-HPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP--DGAFLAVGSHDNHI  471 (626)
T ss_pred             --CCceeEEEEecCceeEeec-cCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC--CCCEEEEecCCCeE
Confidence              1111111 111     122 3444 6667778999999998888888888866666665432  2233444445565 


Q ss_pred             -EEEEeCCCCceEEEeccCCCceEEE
Q psy8875         691 -LYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       691 -lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                       ||-.+...+++.|+++.+|+.++.|
T Consensus       472 yiy~Vs~~g~~y~r~~k~~gs~ithL  497 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSGSPITHL  497 (626)
T ss_pred             EEEEECCCCcEEEEeeeecCceeEEe
Confidence             4556777788889999999666655

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.10  E-value=20  Score=41.11  Aligned_cols=75  Identities=12%  Similarity=0.102  Sum_probs=45.6

Q ss_pred             eEEEecCCCeEEEEeCC---------------CCeEEEEecCCCceEEEEcCC-------CCCCCCeEEEE-ECCE---E
Q psy8875         638 GLTLDLVQRRLYWVDAK---------------LNEISSCDYNGGNRRLVLYSP-------QTLSHPFSIST-FEDW---L  691 (734)
Q Consensus       638 glavD~~~~~LYw~D~~---------------~~~I~~~~~dG~~~~~i~~~~-------~~~~~P~gl~v-~~~~---l  691 (734)
                      .+++|+..++|||.-..               ...|..++++....+=..+..       .....|.-+.+ .+++   +
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~  317 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL  317 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence            46899999999998632               236777777765554444321       11223444444 2333   6


Q ss_pred             EEEeCCCCceEEEeccCCCce
Q psy8875         692 YWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       692 ywtd~~~~~v~~~~~~~G~~~  712 (734)
                      +..-.+++.++.+++.+|+.+
T Consensus       318 v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       318 LAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             EEEeCCCceEEEEECCCCcee
Confidence            666667777777777777654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=93.05  E-value=5.5  Score=39.89  Aligned_cols=34  Identities=24%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS  536 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~  536 (734)
                      ....++|||-|.+++||-. ...++||.++...|.
T Consensus        26 ge~l~GID~Rpa~G~LYgl-~~~g~lYtIn~~tG~   59 (236)
T PF14339_consen   26 GESLVGIDFRPANGQLYGL-GSTGRLYTINPATGA   59 (236)
T ss_pred             CCeEEEEEeecCCCCEEEE-eCCCcEEEEECCCCe
Confidence            3577999999999999988 356899999988654

>KOG0272|consensus

Probab=93.03  E-value=4.4  Score=43.31  Aligned_cols=214  Identities=12%  Similarity=0.022  Sum_probs=113.3

Q ss_pred             EEEecCCcceEEEeeeccC-CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         496 TAIVNSTKSATAIDFVFRT-GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       496 ~~l~~~~~~~~~i~~d~~~-~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      ..+......+.+++|+|.. +.-..+-...+.+.-..+++......+ ..-+..+..+|+.|.++.|- |-....+-...
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l-~gH~~RVs~VafHPsG~~L~-TasfD~tWRlW  288 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL-EGHLARVSRVAFHPSGKFLG-TASFDSTWRLW  288 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh-hcchhhheeeeecCCCceee-ecccccchhhc
Confidence            3444456678899999873 433344444555555555522211111 22345667788886655443 43333333334


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      ++..+....+..+......+||..+ .|.|--|-.- ..++||=..  ......++...+....+++++ .+|+..-+-+
T Consensus       289 D~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR--tgr~im~L~gH~k~I~~V~fs-PNGy~lATgs  364 (459)
T KOG0272|consen  289 DLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR--TGRCIMFLAGHIKEILSVAFS-PNGYHLATGS  364 (459)
T ss_pred             ccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecc--cCcEEEEecccccceeeEeEC-CCceEEeecC
Confidence            4444333233345556777899986 5677666411 123444322  222222334556667788887 5777777777


Q ss_pred             CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ..+.+..-++.+.....++.....+  -..+-+  .+|+..+|-...+.+......+.+.++.|++
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nl--VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaG  428 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNL--VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAG  428 (459)
T ss_pred             CCCcEEEeeecccccceecccccch--hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcC
Confidence            7776666666665442222221111  122333  3567777766666655555555555555543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=92.87  E-value=1.1  Score=51.00  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CCCCccceeeeccCCcEEEEeCCC-------------------CeEEEEeCCCC-------ceEEEEc------------
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAHK-------------------NTIELANFEGT-------MRKVLVR------------  586 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~~-------------------~~I~~~~ldG~-------~~~~l~~------------  586 (734)
                      .+..|++|++++.++.||++-...                   +.|++...++.       ...+++.            
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            577899999999999999996543                   37888887655       2222221            


Q ss_pred             -----CCCCCceeEEEeCCCCeEEEEe
Q psy8875         587 -----SYLDEPRSLALNPIDGWMYWSD  608 (734)
Q Consensus       587 -----~~l~~P~~iavD~~~g~LYwtd  608 (734)
                           ..+..|..|++|+. |.||+..
T Consensus       428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e  453 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPD-GNLWIQE  453 (524)
T ss_pred             CcccCCCcCCCCceEECCC-CCEEEEe
Confidence                 23679999999985 6666665

>KOG1407|consensus

Probab=92.61  E-value=13  Score=37.59  Aligned_cols=178  Identities=12%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      +.+..|+..+.........+..-..-+.+.|.|..+++-+.+. ...|.-++..  ..+............-++.. ..+
T Consensus        84 s~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-dD~it~id~r--~~~~~~~~~~~~e~ne~~w~-~~n  159 (313)
T KOG1407|consen   84 SGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-DDRITFIDAR--TYKIVNEEQFKFEVNEISWN-NSN  159 (313)
T ss_pred             cCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-cccEEEEEec--ccceeehhcccceeeeeeec-CCC
Confidence            3456677777765555555544445556677776666665543 2334333322  11111111111223345554 678


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-ee
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NG  638 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~g  638 (734)
                      +|||...+.+.|.+.......+..-+...-.+-..|.+||.+.++ -+- +....+..-+++--.-...+ ..+.|| +.
T Consensus       160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf-A~G-sADAlvSLWD~~ELiC~R~i-sRldwpVRT  236 (313)
T KOG1407|consen  160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF-ATG-SADALVSLWDVDELICERCI-SRLDWPVRT  236 (313)
T ss_pred             CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE-eec-cccceeeccChhHhhhheee-ccccCceEE
Confidence            899999999999988776433332232333455689999865433 332 12222222222221111112 456777 56


Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         639 LTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      |++.+ .+++.-+-+..+.|--+....
T Consensus       237 lSFS~-dg~~lASaSEDh~IDIA~vet  262 (313)
T KOG1407|consen  237 LSFSH-DGRMLASASEDHFIDIAEVET  262 (313)
T ss_pred             EEecc-CcceeeccCccceEEeEeccc
Confidence            77754 344433444455566555443

>KOG0272|consensus

Probab=92.55  E-value=4.2  Score=43.47  Aligned_cols=182  Identities=8%  Similarity=0.003  Sum_probs=100.0

Q ss_pred             EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875         497 AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN  575 (734)
Q Consensus       497 ~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~  575 (734)
                      .+...+.++..++|+|...+|--+ .....-...++..  ..+++. .+-...+.+||+.+ .|.|..|-.....=++.+
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~Ta-sfD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWD  331 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTA-SFDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWD  331 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeec-ccccchhhccccc--chhhHhhcccccccceeEecC-CCceeeccCccchhheee
Confidence            333445678889999866555433 2222222223332  222222 22234566788874 466666654433334456


Q ss_pred             CCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875         576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       576 ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~  654 (734)
                      +.......++.+.+....+++++| +|+..-|-.+. .-+||...|--.  ..++.........+-+++..++..++-+.
T Consensus       332 lRtgr~im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~Tasy  408 (459)
T KOG0272|consen  332 LRTGRCIMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASY  408 (459)
T ss_pred             cccCcEEEEecccccceeeEeECC-CceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEccc
Confidence            655555556667888889999998 68888887543 246665554332  22232333345567777767777777666


Q ss_pred             CCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEEC
Q psy8875         655 LNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       655 ~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      .+.+....-. .+-.++++   ..-..-+++++..
T Consensus       409 D~t~kiWs~~~~~~~ksLa---GHe~kV~s~Dis~  440 (459)
T KOG0272|consen  409 DNTVKIWSTRTWSPLKSLA---GHEGKVISLDISP  440 (459)
T ss_pred             CcceeeecCCCcccchhhc---CCccceEEEEecc
Confidence            5555444433 33344443   2234456777743

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=92.51  E-value=0.091  Score=36.00  Aligned_cols=26  Identities=38%  Similarity=0.995  Sum_probs=19.9

Q ss_pred             CCcc--cceeccCCceEEecCCCeeeCC
Q psy8875         437 GSCS--QICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       437 ~~C~--~~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      +.|+  ++|+++.++|.|.|.+||.++.
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG   33 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGDG   33 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccCC
Confidence            4564  4899999999999999999975

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG0289|consensus

Probab=92.46  E-value=18  Score=39.02  Aligned_cols=143  Identities=10%  Similarity=0.023  Sum_probs=77.8

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEc-CCCCceeEEEecCCC
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVS-DIKWPNGLTLDLVQR  646 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~-~l~~P~glavD~~~~  646 (734)
                      ..|++..........++...-...+++.++|.+.||.|++..  +.+.-.++ +|....++..+ .--.-..+++. ..+
T Consensus       283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d--~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH-pDg  359 (506)
T KOG0289|consen  283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASND--GTWAFSDISSGSQLTVVSDETSDVEYTSAAFH-PDG  359 (506)
T ss_pred             ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCC--ceEEEEEccCCcEEEEEeeccccceeEEeeEc-CCc
Confidence            344444433333333333334556899999999999999832  33333333 45544433332 11113456663 677


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         647 RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       647 ~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .||-+-...+.|...++....  .+...+..-..-.+|++. +||-..+....+.|.-.+...-++.+.++
T Consensus       360 Lifgtgt~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  360 LIFGTGTPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeccCCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            888887777777777765544  222222222233467774 45544555555556666655555555554

>smart00181 EGF Epidermal growth factor-like domain

Probab=92.41  E-value=0.13  Score=34.72  Aligned_cols=25  Identities=44%  Similarity=1.192  Sum_probs=21.7

Q ss_pred             CCccc-ceeccCCceEEecCCCeeeC
Q psy8875         437 GSCSQ-ICLNEKGGFKCECVAGYIKD  461 (734)
Q Consensus       437 ~~C~~-~C~n~~g~~~C~C~~gy~~~  461 (734)
                      .+|.+ +|+++.++|.|.|++||.+.
T Consensus         6 ~~C~~~~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCCCeEeECCCCCccC
Confidence            45766 89999999999999999874

>KOG0310|consensus

Probab=92.32  E-value=20  Score=39.19  Aligned_cols=174  Identities=14%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL  584 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l  584 (734)
                      +.-+-|.+..+.++.+-...+.+...++++.. ...-+...-...+..++-+.+++|.+|-...+.|...++.... ..+
T Consensus       113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v  190 (487)
T KOG0310|consen  113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRV  190 (487)
T ss_pred             eeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-cee
Confidence            34455666777777776555555555666433 2323333455678889999999999999999999999886553 223


Q ss_pred             EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE-EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM-VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       585 ~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~-lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      ++-+-..|..-++-...|.++.+..|  +.|.+.++-++.+.+ ...........|.+-..+.+|+-+- -.+.+..++ 
T Consensus       191 ~elnhg~pVe~vl~lpsgs~iasAgG--n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s-LD~~VKVfd-  266 (487)
T KOG0310|consen  191 VELNHGCPVESVLALPSGSLIASAGG--NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS-LDRHVKVFD-  266 (487)
T ss_pred             EEecCCCceeeEEEcCCCCEEEEcCC--CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc-cccceEEEE-
Confidence            33334456655555567788888755  456666665333322 1112334456677765556666443 234455544 


Q ss_pred             CCCceEEEEcCCCCCCCC-eEEEEE
Q psy8875         664 NGGNRRLVLYSPQTLSHP-FSISTF  687 (734)
Q Consensus       664 dG~~~~~i~~~~~~~~~P-~gl~v~  687 (734)
                       -++.+++..  -..+.| .+|+++
T Consensus       267 -~t~~Kvv~s--~~~~~pvLsiavs  288 (487)
T KOG0310|consen  267 -TTNYKVVHS--WKYPGPVLSIAVS  288 (487)
T ss_pred             -ccceEEEEe--eecccceeeEEec
Confidence             345555543  123333 466763

>KOG0650|consensus

Probab=92.20  E-value=6.9  Score=43.72  Aligned_cols=136  Identities=10%  Similarity=0.145  Sum_probs=74.7

Q ss_pred             CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc-
Q psy8875         589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN-  667 (734)
Q Consensus       589 l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~-  667 (734)
                      -..|..++++|..-+||++..   ..|...++--.....-+.....|...|+|++.++.|.... ..++|-.++++=+. 
T Consensus       566 kG~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldlssk  641 (733)
T KOG0650|consen  566 KGLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLSSK  641 (733)
T ss_pred             CCceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccCcc
Confidence            457889999999999999973   3444445433221111224567788888887777776554 34566666665331 


Q ss_pred             -eEEE------Ec-CCCCCCCC--------eEEEEECCEEEEEeCCCCceEEEeccCCCceE----EEecccccCCCccC
Q psy8875         668 -RRLV------LY-SPQTLSHP--------FSISTFEDWLYWSDWQQKAIYKANKFTGDNLT----AITGVHQTHEPLNS  727 (734)
Q Consensus       668 -~~~i------~~-~~~~~~~P--------~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~----~l~~~~~l~~P~~i  727 (734)
                       .+++      +. .......|        -.+.||.+.||=--.++..|+-+.++.|..++    +|...-.-.+|+.+
T Consensus       642 Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLf  721 (733)
T KOG0650|consen  642 PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLF  721 (733)
T ss_pred             hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEE
Confidence             1111      00 00011112        12445666666433455566666666776555    55433334566666


Q ss_pred             C
Q psy8875         728 P  728 (734)
Q Consensus       728 ~  728 (734)
                      +
T Consensus       722 s  722 (733)
T KOG0650|consen  722 S  722 (733)
T ss_pred             e
Confidence            3

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.10  E-value=11  Score=38.60  Aligned_cols=142  Identities=14%  Similarity=0.137  Sum_probs=81.9

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCce-EEEEeCC-CC----------CccceeeeccCCc--EEEEeCCCCeEEEEeCCCC
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSER-TVVIEED-KT----------IADGLAVDWIYSH--IYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~-~~----------~p~glAvD~~~~~--lY~td~~~~~I~~~~ldG~  579 (734)
                      ++.||+--.....|.|.+|..+... +..+... ..          .-..+|||. +|.  ||-+....+.|.++.||-.
T Consensus        78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~~~~g~ivvskld~~  156 (250)
T PF02191_consen   78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATEDNNGNIVVSKLDPE  156 (250)
T ss_pred             CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcC-CCEEEEEecCCCCCcEEEEeeCcc
Confidence            6889999888899999999865544 3333211 11          113689993 443  4555555667888888765


Q ss_pred             ceEEE--EcCCCCCce---eEEEeCCCCeEEEEecCCC--ceE-EEeccCC-CceE--EEEEcCCCCceeEEEecCCCeE
Q psy8875         580 MRKVL--VRSYLDEPR---SLALNPIDGWMYWSDWGQN--AKI-ERAGMDG-SHRN--MVIVSDIKWPNGLTLDLVQRRL  648 (734)
Q Consensus       580 ~~~~l--~~~~l~~P~---~iavD~~~g~LYwtd~~~~--~~I-~~~~ldG-~~~~--~lv~~~l~~P~glavD~~~~~L  648 (734)
                      ...+.  ....+..+.   +..|   =|.||.++....  .+| ...++.- +...  +.+.........|.-+|.+++|
T Consensus       157 tL~v~~tw~T~~~k~~~~naFmv---CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~L  233 (250)
T PF02191_consen  157 TLSVEQTWNTSYPKRSAGNAFMV---CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKL  233 (250)
T ss_pred             cCceEEEEEeccCchhhcceeeE---eeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeE
Confidence            43332  223333322   3333   589999986432  344 3344432 1111  1222334455678889999999


Q ss_pred             EEEeCCCCeEE
Q psy8875         649 YWVDAKLNEIS  659 (734)
Q Consensus       649 Yw~D~~~~~I~  659 (734)
                      |.=|.+.-.++
T Consensus       234 Y~wd~G~~v~Y  244 (250)
T PF02191_consen  234 YAWDNGYQVTY  244 (250)
T ss_pred             EEEECCeEEEE
Confidence            98885533333

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0308|consensus

Probab=92.02  E-value=17  Score=41.22  Aligned_cols=191  Identities=12%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE----------EEeCCCCCccceeeeccCCcEEEEeCCCCeEE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV----------VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE  572 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~----------~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~  572 (734)
                      ..+..|++-...+.++.+-.-.++|+..+++.|..+.+          +..+......+||.. .++.|+++-...+-|.
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr  196 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLR  196 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceE
Confidence            34556666444556666655566777777664422111          011223345678877 4556777766677777


Q ss_pred             EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--eEEEEEcCCCCceeEEEecCCCeEEE
Q psy8875         573 LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--RNMVIVSDIKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       573 ~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--~~~lv~~~l~~P~glavD~~~~~LYw  650 (734)
                      +.+.....+.+-+.+...+.+.|.++....++.=+.  ..+.|..-++.-+.  .+.++.++.  .-+|..++.=..+|.
T Consensus       197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s--SDgtIrlWdLgqQrCl~T~~vH~e~--VWaL~~~~sf~~vYs  272 (735)
T KOG0308|consen  197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS--SDGTIRLWDLGQQRCLATYIVHKEG--VWALQSSPSFTHVYS  272 (735)
T ss_pred             EeccccccceeeeeccccceEEEEEcCCCCeEeecC--CCceEEeeeccccceeeeEEeccCc--eEEEeeCCCcceEEe
Confidence            777766555554557778889999987554444333  24666666654332  122333444  446777766677887


Q ss_pred             EeCCCCeEEEEecCCCceEEEEcCCCCCCCCe---EEEEECCEEEEEeCCCCceEE
Q psy8875         651 VDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF---SISTFEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       651 ~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~---gl~v~~~~lywtd~~~~~v~~  703 (734)
                      .+. .+.|++.++......+++-.+   .+|.   .+...++.++++.|. ..|.|
T Consensus       273 G~r-d~~i~~Tdl~n~~~~tlick~---daPv~~l~~~~~~~~~WvtTtd-s~I~r  323 (735)
T KOG0308|consen  273 GGR-DGNIYRTDLRNPAKSTLICKE---DAPVLKLHLHEHDNSVWVTTTD-SSIKR  323 (735)
T ss_pred             cCC-CCcEEecccCCchhheEeecC---CCchhhhhhccccCCceeeecc-cccee
Confidence            774 467999888774433333222   2332   233345666555554 44443

>KOG0646|consensus

Probab=91.93  E-value=16  Score=39.73  Aligned_cols=201  Identities=9%  Similarity=-0.002  Sum_probs=94.2

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC------
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG------  578 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG------  578 (734)
                      ..+|+-++ .+...+.....+.||-..+..|..-.++ ..-.....-|.+- ..+.+++|-...+.|.+..+-.      
T Consensus        84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeeccccc
Confidence            34555553 3333333334566666666655432222 1122233334443 4577777877777777665411      


Q ss_pred             C-ce--EEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         579 T-MR--KVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       579 ~-~~--~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      . ..  .-.+........+|.+.+-  +.+||-+..  ...|...++.+.....-+. --..+++++||+.+.++|+-. 
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt-  236 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGT-  236 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecC-
Confidence            0 00  0111222223344444432  334554432  2222222222221111111 123468999998888888665 


Q ss_pred             CCCeEEEEecCCCc-----------------eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceE
Q psy8875         654 KLNEISSCDYNGGN-----------------RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLT  713 (734)
Q Consensus       654 ~~~~I~~~~~dG~~-----------------~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~  713 (734)
                      ..+.|+..++.+..                 +..++. ......-.-|++ ..+.|..+-...+.|...+..+-+-++
T Consensus       237 ~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~G-h~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR  313 (476)
T KOG0646|consen  237 EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVG-HENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR  313 (476)
T ss_pred             CcceEEeeehhcCCcccccccccccccccceeeeecc-ccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence            45788887765432                 111111 111112334666 567777776666666666554444333

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=91.92  E-value=0.14  Score=34.42  Aligned_cols=20  Identities=40%  Similarity=0.918  Sum_probs=16.4

Q ss_pred             CccccCCCcceeecCCCcEe
Q psy8875         401 HKCVDLPVGYMCECNEGYKL  420 (734)
Q Consensus       401 ~~C~~~~~~~~C~C~~G~~l  420 (734)
                      ++|++++++|+|.|+.||.+
T Consensus        12 ~~C~~~~~~~~C~C~~g~~g   31 (36)
T cd00053          12 GTCVNTPGSYRCVCPPGYTG   31 (36)
T ss_pred             CEEecCCCCeEeECCCCCcc
Confidence            57888888899999998854

>PHA02713 hypothetical protein; Provisional

Probab=91.68  E-value=26  Score=40.45  Aligned_cols=186  Identities=14%  Similarity=0.114  Sum_probs=96.3

Q ss_pred             CCeEEEEEeCC------CcEEEEecCCCCceEEEEeCCCCCcc-ceeeeccCCcEEEEeCC-----CCeEEEEeCCCCce
Q psy8875         514 TGMIFWSDISE------KKIYKAPIDEGSERTVVIEEDKTIAD-GLAVDWIYSHIYWTDAH-----KNTIELANFEGTMR  581 (734)
Q Consensus       514 ~~~lyw~d~~~------~~I~~~~l~~g~~~~~~~~~~~~~p~-glAvD~~~~~lY~td~~-----~~~I~~~~ldG~~~  581 (734)
                      .+.||++-...      ..+++.++....  ...+. .+..|+ +.++-...++||+.-..     ...+++.++....-
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~-~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELP-PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCC-CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            68899885421      346677765322  12222 333333 22333356899998543     23577777765443


Q ss_pred             EEEEcCCCCCce---eEEEeCCCCeEEEEecCC----------------------CceEEEeccCCCceEEEEEcCCCCc
Q psy8875         582 KVLVRSYLDEPR---SLALNPIDGWMYWSDWGQ----------------------NAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       582 ~~l~~~~l~~P~---~iavD~~~g~LYwtd~~~----------------------~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      ..+  ..+..|+   ++++  .+|+||+.--..                      ...+++.+..-..-+.+  ..+..|
T Consensus       380 ~~~--~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v--~~m~~~  453 (557)
T PHA02713        380 KML--PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL--PNFWTG  453 (557)
T ss_pred             EEC--CCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec--CCCCcc
Confidence            332  2333332   2232  479999975211                      13466666543222211  122222


Q ss_pred             ---eeEEEecCCCeEEEEeCCC------CeEEEEecCC-CceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC--ceEEE
Q psy8875         637 ---NGLTLDLVQRRLYWVDAKL------NEISSCDYNG-GNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK--AIYKA  704 (734)
Q Consensus       637 ---~glavD~~~~~LYw~D~~~------~~I~~~~~dG-~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~--~v~~~  704 (734)
                         .++++  .+++||+.-...      ..|++++... ..=+.+..- ..-..-.++++.+++||++-...+  .+.+.
T Consensus       454 r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        454 TIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILHDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             cccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEECCEEEEEeeecceeehhhc
Confidence               24443  589999985321      3567877765 222222211 111223578889999999854333  45566


Q ss_pred             eccCCCc
Q psy8875         705 NKFTGDN  711 (734)
Q Consensus       705 ~~~~G~~  711 (734)
                      |+.+.+-
T Consensus       531 d~~~~~W  537 (557)
T PHA02713        531 NVYTYEW  537 (557)
T ss_pred             Ccccccc
Confidence            6655543

>KOG0270|consensus

Probab=91.63  E-value=11  Score=40.78  Aligned_cols=154  Identities=13%  Similarity=0.128  Sum_probs=91.6

Q ss_pred             EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--------
Q psy8875         506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--------  577 (734)
Q Consensus       506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--------  577 (734)
                      .+|+|......|..+-...++|..-+++.|....++. ..-..+..|+..+....+..+-+..+++...+..        
T Consensus       247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~  325 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE  325 (463)
T ss_pred             HHHHhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence            4566666666777777777888888888766544443 2334567788777777777777766777666543        


Q ss_pred             ----CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         578 ----GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       578 ----G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                          |...++.+  ....|..+.+....|.|||.|.++.+ .++..         ..+.  ....||.+......|..+.
T Consensus       326 wk~~g~VEkv~w--~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~---------~AHd--~~ISgl~~n~~~p~~l~t~  392 (463)
T KOG0270|consen  326 WKFDGEVEKVAW--DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL---------KAHD--DEISGLSVNIQTPGLLSTA  392 (463)
T ss_pred             EEeccceEEEEe--cCCCceeEEEecCCceEEeeecCCCCCceeEE---------Eecc--CCcceEEecCCCCcceeec
Confidence                22222222  12344455555556777777754321 12211         1111  1245777776666777777


Q ss_pred             CCCCeEEEEecCCCceEEEEc
Q psy8875         653 AKLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       653 ~~~~~I~~~~~dG~~~~~i~~  673 (734)
                      +..+.|...++++.+.+.+..
T Consensus       393 s~d~~Vklw~~~~~~~~~v~~  413 (463)
T KOG0270|consen  393 STDKVVKLWKFDVDSPKSVKE  413 (463)
T ss_pred             cccceEEEEeecCCCCccccc
Confidence            766777777777776655543

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=91.59  E-value=1.5  Score=49.94  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=44.8

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCC-------------------CcEEEEecCCC-------CceEEEEe-----------
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISE-------------------KKIYKAPIDEG-------SERTVVIE-----------  543 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~-------------------~~I~~~~l~~g-------~~~~~~~~-----------  543 (734)
                      .+.+|.+|.+++..+.||++-...                   +.|+++...++       ....+++.           
T Consensus       348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~  427 (524)
T PF05787_consen  348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS  427 (524)
T ss_pred             cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence            467899999999999999985433                   37999887743       11222222           


Q ss_pred             -----CCCCCccceeeeccCCcEEEEeC
Q psy8875         544 -----EDKTIADGLAVDWIYSHIYWTDA  566 (734)
Q Consensus       544 -----~~~~~p~glAvD~~~~~lY~td~  566 (734)
                           ..+..|.+|++|+. ++||+..-
T Consensus       428 ~~~~~~~f~sPDNL~~d~~-G~LwI~eD  454 (524)
T PF05787_consen  428 NKCDDNGFASPDNLAFDPD-GNLWIQED  454 (524)
T ss_pred             CcccCCCcCCCCceEECCC-CCEEEEeC
Confidence                 23678999999975 55666543

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.53  E-value=23  Score=38.52  Aligned_cols=109  Identities=15%  Similarity=0.078  Sum_probs=63.2

Q ss_pred             CCeEEEEecCCCceEEEecc-CCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCC-C
Q psy8875         601 DGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSP-Q  676 (734)
Q Consensus       601 ~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~-~  676 (734)
                      .|+||+.++.  ++++..++ +|+..-..-... ..+..+..+  ..+.+|+.. ..+.+..++.+ |..+=..-... .
T Consensus       111 ~G~i~~g~~~--g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~  185 (370)
T COG1520         111 DGKIYVGSWD--GKLYALDASTGTLVWSRNVGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPL  185 (370)
T ss_pred             CCeEEEeccc--ceEEEEECCCCcEEEEEecCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCcc
Confidence            6889999863  47888888 676543332222 122222333  467777774 45678888876 54433321111 0


Q ss_pred             CCCCCeEEEEECCEEEEEeCC-CCceEEEeccCCCceEE
Q psy8875         677 TLSHPFSISTFEDWLYWSDWQ-QKAIYKANKFTGDNLTA  714 (734)
Q Consensus       677 ~~~~P~gl~v~~~~lywtd~~-~~~v~~~~~~~G~~~~~  714 (734)
                      ......+..+..+.+|+.... +..++.++..+|+....
T Consensus       186 ~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~  224 (370)
T COG1520         186 SLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS  224 (370)
T ss_pred             ccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence            112222233788889998664 45788888888876554

>KOG0994|consensus

Probab=91.35  E-value=1.4  Score=52.34  Aligned_cols=70  Identities=24%  Similarity=0.469  Sum_probs=41.5

Q ss_pred             cccccccccCCCCCcccccccccccCCCCCCCCCCCCC---CCCcccccccc-----CCCCCcC------ccccCCCcce
Q psy8875         346 RIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDED---PTKCGVDECAK-----DNGGCLH------KCVDLPVGYM  411 (734)
Q Consensus       346 ~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~---~~~C~~~eC~~-----~~~~C~~------~C~~~~~~~~  411 (734)
                      ..-|   .|.+||++.+|.          +|.+++.+.   +..|..=||..     .++.|..      +|+-..-|-.
T Consensus       933 ~ivC---~C~~GY~G~RCe----------~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~h  999 (1758)
T KOG0994|consen  933 QIVC---HCQEGYSGSRCE----------ICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDH  999 (1758)
T ss_pred             ceee---ecccCccccchh----------hhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccc
Confidence            3455   677788888876          677777442   22343323322     1334432      4666666777


Q ss_pred             e-ecCCCcEecCCCCccc
Q psy8875         412 C-ECNEGYKLSSNRHTCI  428 (734)
Q Consensus       412 C-~C~~G~~l~~~~~~C~  428 (734)
                      | .|.+||....-.++|.
T Consensus      1000 Ce~Ck~Gf~GdA~~q~Cq 1017 (1758)
T KOG0994|consen 1000 CEHCKDGFYGDALRQNCQ 1017 (1758)
T ss_pred             hhhccccchhHHHHhhhh
Confidence            7 5999998765555553

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=91.07  E-value=19  Score=36.31  Aligned_cols=98  Identities=18%  Similarity=0.196  Sum_probs=57.7

Q ss_pred             eCCCCeEEEEeCCCCceE--EEE------cCCCCCceeEEEe--CCCCeEEEEecCCCceEEEecc-C---CCceEEEEE
Q psy8875         565 DAHKNTIELANFEGTMRK--VLV------RSYLDEPRSLALN--PIDGWMYWSDWGQNAKIERAGM-D---GSHRNMVIV  630 (734)
Q Consensus       565 d~~~~~I~~~~ldG~~~~--~l~------~~~l~~P~~iavD--~~~g~LYwtd~~~~~~I~~~~l-d---G~~~~~lv~  630 (734)
                      |..+..|.+..+++..+.  .|.      ...+..|.|+++.  +.+|-+|+--.+..+.|....+ |   |..+..++.
T Consensus       120 dR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR  199 (364)
T COG4247         120 DRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVR  199 (364)
T ss_pred             cccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeE
Confidence            344566777666654332  222      2456788888884  4556555554444566666554 3   322222332


Q ss_pred             c-CC-CCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         631 S-DI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       631 ~-~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      . ++ .+..|+..|-..+.||+++.. -.||++..
T Consensus       200 ~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~A  233 (364)
T COG4247         200 QFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEA  233 (364)
T ss_pred             eeecCCcccceeeccccceEEEeecc-ceeeeccc
Confidence            1 11 245799999999999999743 46888774

>KOG0318|consensus

Probab=90.98  E-value=29  Score=38.42  Aligned_cols=194  Identities=15%  Similarity=0.113  Sum_probs=94.1

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCC-ce
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGT-MR  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~-~~  581 (734)
                      -...+-|.|. +..|.+-...++|+.++-..|...-.+-......-.=.||-|. ...-+.|-+....+.+.+.... ..
T Consensus       192 FV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  192 FVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             ceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            4566778774 7788887788888887655443333332111111111334443 2333444444455555444322 22


Q ss_pred             EEEEcCCC--CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         582 KVLVRSYL--DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       582 ~~l~~~~l--~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      +++.....  .+-.|+.-  .++.|.-..  ..+.|.-.+.+-.....++......-.+|++.+.+..||-++ ..+.|.
T Consensus       271 ~t~~~~~~v~dqqvG~lW--qkd~lItVS--l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs-yDG~I~  345 (603)
T KOG0318|consen  271 STWPMGSTVEDQQVGCLW--QKDHLITVS--LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS-YDGHIN  345 (603)
T ss_pred             EEeecCCchhceEEEEEE--eCCeEEEEE--cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec-cCceEE
Confidence            22221111  11112111  122222221  123333333321123334445555667899987777777665 456777


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEe
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTFE-DWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~  705 (734)
                      .-+......-.+.. ...-..-.+|+..+ +.||-.-|. ..|.++.
T Consensus       346 ~W~~~~g~~~~~~g-~~h~nqI~~~~~~~~~~~~t~g~D-d~l~~~~  390 (603)
T KOG0318|consen  346 SWDSGSGTSDRLAG-KGHTNQIKGMAASESGELFTIGWD-DTLRVIS  390 (603)
T ss_pred             EEecCCcccccccc-ccccceEEEEeecCCCcEEEEecC-CeEEEEe
Confidence            76654332222221 12334566888876 778877776 5566664

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=90.73  E-value=0.13  Score=34.27  Aligned_cols=18  Identities=61%  Similarity=1.501  Sum_probs=13.2

Q ss_pred             ccccCC-CcceeecCCCcE
Q psy8875         402 KCVDLP-VGYMCECNEGYK  419 (734)
Q Consensus       402 ~C~~~~-~~~~C~C~~G~~  419 (734)
                      .|++.. ++|+|.|++||.
T Consensus        11 ~C~~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen   11 TCIDLPGGGYTCECPPGYT   29 (32)
T ss_dssp             EEEEESTSEEEEEEBTTEE
T ss_pred             EEEeCCCCCEEeECCCCCc
Confidence            677776 777777777774

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=90.71  E-value=26  Score=38.14  Aligned_cols=141  Identities=11%  Similarity=0.050  Sum_probs=68.5

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceE--EEE--eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEEEcCC
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERT--VVI--EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVLVRSY  588 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~--~~~--~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l~~~~  588 (734)
                      .+++|+. ...+.|+.++++.+...-  .+.  ...+..|...+    .++||+.+... .++..+. +|...-..-...
T Consensus        68 dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~g-~~y~ld~~~G~~~W~~~~~~  141 (370)
T COG1520          68 DGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWDG-KLYALDASTGTLVWSRNVGG  141 (370)
T ss_pred             CCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEecccc-eEEEEECCCCcEEEEEecCC
Confidence            6788876 345678888877554211  011  01222333332    67888888753 7777777 565543322222


Q ss_pred             -CCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEc---CCCCceeEEEecCCCeEEEEeCC-CCeEEEEe
Q psy8875         589 -LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVS---DIKWPNGLTLDLVQRRLYWVDAK-LNEISSCD  662 (734)
Q Consensus       589 -l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~---~l~~P~glavD~~~~~LYw~D~~-~~~I~~~~  662 (734)
                       .......++  ..+.+|+..  ..++++..+.+ |+.+-..-..   .+......+  ...+.+|+.... ...++.++
T Consensus       142 ~~~~~~~~v~--~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~~  215 (370)
T COG1520         142 SPYYASPPVV--GDGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYALN  215 (370)
T ss_pred             CeEEecCcEE--cCcEEEEec--CCCeEEEEEccCCcEEEEEecCCccccccccCce--eecceEEEecCCCcceEEEEE
Confidence             011111222  345666663  13566666665 5443221111   122222222  246677777543 33566666


Q ss_pred             c-CCC
Q psy8875         663 Y-NGG  666 (734)
Q Consensus       663 ~-dG~  666 (734)
                      . +|.
T Consensus       216 ~~~G~  220 (370)
T COG1520         216 AEDGT  220 (370)
T ss_pred             ccCCc
Confidence            5 444

>KOG0296|consensus

Probab=90.69  E-value=25  Score=37.15  Aligned_cols=173  Identities=8%  Similarity=-0.048  Sum_probs=96.2

Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      .....++++| +.+|-.|-.+..+-++.+.........+.+.-.....+.+.....  |.+.-+..++|....++-...+
T Consensus        65 ~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~~~stg~~~  141 (399)
T KOG0296|consen   65 DSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVFKVSTGGEQ  141 (399)
T ss_pred             CceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCce--EEEecCCCccEEEEEcccCceE
Confidence            4566788887 777888877777777766654443333334445566666654332  2222233455555444332222


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEec
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~  706 (734)
                      ..+.....--.=|..-+ ..+++.+-...+.|+...+..+....+++++ ..+--.|=.+-.|+...+-...+.|+..|+
T Consensus       142 ~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~  219 (399)
T KOG0296|consen  142 WKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDGKRILTGYDDGTIIVWNP  219 (399)
T ss_pred             EEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCCceEEEEecCceEEEEec
Confidence            22211111112244443 5567777777888988887765554555432 111112323333555555556789999999


Q ss_pred             cCCCceEEEecccccCCC
Q psy8875         707 FTGDNLTAITGVHQTHEP  724 (734)
Q Consensus       707 ~~G~~~~~l~~~~~l~~P  724 (734)
                      .+|+.+..+.+...+..|
T Consensus       220 ktg~p~~~~~~~e~~~~~  237 (399)
T KOG0296|consen  220 KTGQPLHKITQAEGLELP  237 (399)
T ss_pred             CCCceeEEecccccCcCC
Confidence            999998888765554433

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=90.61  E-value=0.26  Score=32.75  Aligned_cols=24  Identities=38%  Similarity=1.138  Sum_probs=19.8

Q ss_pred             Cccc--ceeccC-CceEEecCCCeeeC
Q psy8875         438 SCSQ--ICLNEK-GGFKCECVAGYIKD  461 (734)
Q Consensus       438 ~C~~--~C~n~~-g~~~C~C~~gy~~~  461 (734)
                      +|.+  +|++.. ++|.|.|++||.+.
T Consensus         5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    5 PCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             SSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             cCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4544  788888 99999999999874

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00284 OLF Olfactomedin-like domains

Probab=90.50  E-value=18  Score=36.98  Aligned_cols=138  Identities=12%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCce-EEEEeC-C----------CCCccceeeeccCCc-EEEEeCCCCeEEEEeCCCCc
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSER-TVVIEE-D----------KTIADGLAVDWIYSH-IYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~-~----------~~~p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~  580 (734)
                      ++.||+.-..+..|.|.+|..+... +.++.. +          ...--.||||..+=. ||-|....+.|.++.|+-..
T Consensus        83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t  162 (255)
T smart00284       83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT  162 (255)
T ss_pred             CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence            6899998888889999999865442 222221 1          111236899943322 56566667889988887655


Q ss_pred             eEEEE--cCCCCCc---eeEEEeCCCCeEEEEecC--CCceEE-EeccCCCceEE---EEEcCCCCceeEEEecCCCeEE
Q psy8875         581 RKVLV--RSYLDEP---RSLALNPIDGWMYWSDWG--QNAKIE-RAGMDGSHRNM---VIVSDIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       581 ~~~l~--~~~l~~P---~~iavD~~~g~LYwtd~~--~~~~I~-~~~ldG~~~~~---lv~~~l~~P~glavD~~~~~LY  649 (734)
                      ..+.-  .....++   .+..|   =|.||.++..  ...+|. ..++..+....   ........-..|.-.|.+++||
T Consensus       163 L~ve~tW~T~~~k~sa~naFmv---CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY  239 (255)
T smart00284      163 LTIENTWITTYNKRSASNAFMI---CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLY  239 (255)
T ss_pred             ceEEEEEEcCCCcccccccEEE---eeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEE
Confidence            44432  2333222   23333   5889999842  224553 34444332211   1112223334577788888999


Q ss_pred             EEeCC
Q psy8875         650 WVDAK  654 (734)
Q Consensus       650 w~D~~  654 (734)
                      .=|-+
T Consensus       240 ~wdng  244 (255)
T smart00284      240 AWNNG  244 (255)
T ss_pred             EEeCC
Confidence            77744

>KOG0276|consensus

Probab=90.47  E-value=36  Score=38.60  Aligned_cols=156  Identities=9%  Similarity=0.031  Sum_probs=91.9

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      .+..+|+++|.+-.+. +...++.+...+.+.......+--  -..|.--|.=-...+-.++-+...+|++.+.+...+.
T Consensus        14 dRVKsVd~HPtePw~l-a~LynG~V~IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV   90 (794)
T KOG0276|consen   14 DRVKSVDFHPTEPWIL-AALYNGDVQIWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV   90 (794)
T ss_pred             CceeeeecCCCCceEE-EeeecCeeEEEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceee
Confidence            4556667766544333 223345554444442222111110  1112211211134556667777889999999988777


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE-EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN-MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~-~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      ..++..-...|.|||+|..-++.-+  +....|..-+.++.... .......+....|++.|....-|.+-+-..+|..-
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLts--SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTS--SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEec--CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            7777777889999999987554433  23456766666766543 33445567778899988887777776554544444


Q ss_pred             ec
Q psy8875         662 DY  663 (734)
Q Consensus       662 ~~  663 (734)
                      .+
T Consensus       169 sl  170 (794)
T KOG0276|consen  169 SL  170 (794)
T ss_pred             Ec
Confidence            44

>KOG0268|consensus

Probab=90.46  E-value=5.2  Score=42.02  Aligned_cols=153  Identities=15%  Similarity=0.204  Sum_probs=95.8

Q ss_pred             CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc--eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM--RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~--~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                      +......+...++.-.|..+-...+.|...++....  .++++   ...+++|...| .++.|.+.. +...|+..+|--
T Consensus       186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~-ED~nlY~~DmR~  260 (433)
T KOG0268|consen  186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAAN-EDHNLYTYDMRN  260 (433)
T ss_pred             CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCc-cccceeecc-ccccceehhhhh
Confidence            344455666666766777666667778888774332  22332   34688999999 888988873 457888888765


Q ss_pred             CceEEEEEcC-CCCceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE---eCC
Q psy8875         623 SHRNMVIVSD-IKWPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS---DWQ  697 (734)
Q Consensus       623 ~~~~~lv~~~-l~~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt---d~~  697 (734)
                      -.+.+-+..+ ...  -|.||+. .|.=|++-+....|.-+..+.+.-+.++.. ..+++-+++.+.-+.-|+.   |-+
T Consensus       261 l~~p~~v~~dhvsA--V~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  261 LSRPLNVHKDHVSA--VMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             hcccchhhccccee--EEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCc
Confidence            4443333221 222  2344433 567777877778888888776654444432 5688899999866555553   334


Q ss_pred             CCceEEEe
Q psy8875         698 QKAIYKAN  705 (734)
Q Consensus       698 ~~~v~~~~  705 (734)
                      +-+||+++
T Consensus       338 nvRlWka~  345 (433)
T KOG0268|consen  338 NVRLWKAK  345 (433)
T ss_pred             ceeeeecc
Confidence            44566654

>KOG0263|consensus

Probab=90.38  E-value=33  Score=39.73  Aligned_cols=199  Identities=11%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeC
Q psy8875         498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANF  576 (734)
Q Consensus       498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~l  576 (734)
                      ++.....+.+..|.|..+ +.++-.....|+--.++ .....++..+.+.....+.+-|.  -.||+.... .+-.+...
T Consensus       447 L~GH~GPVyg~sFsPd~r-fLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  447 LYGHSGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWST  522 (707)
T ss_pred             eecCCCceeeeeeccccc-ceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeec
Confidence            444455667888887544 33444445566666665 22233444433333334555533  356665543 33333444


Q ss_pred             CCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         577 EGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       577 dG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      +-....-++.+.+....-++++|...+|.--.....-++|-+ ..|..++ +..+.-....+|++.+-+..| .+-...+
T Consensus       523 d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv-~~G~~VR-iF~GH~~~V~al~~Sp~Gr~L-aSg~ed~  599 (707)
T KOG0263|consen  523 DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDV-STGNSVR-IFTGHKGPVTALAFSPCGRYL-ASGDEDG  599 (707)
T ss_pred             ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEc-CCCcEEE-EecCCCCceEEEEEcCCCceE-eecccCC
Confidence            544444455578888888999997766553311111233332 2344444 344444555778887544333 3334556


Q ss_pred             eEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEe
Q psy8875         657 EISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~  705 (734)
                      .|...++.++.+...+..  .-..-.+|++ ..+.+.++....+.|..-+
T Consensus       600 ~I~iWDl~~~~~v~~l~~--Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  600 LIKIWDLANGSLVKQLKG--HTGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             cEEEEEcCCCcchhhhhc--ccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            777778776554433332  2345567777 6778888887777765544

>KOG4378|consensus

Probab=90.06  E-value=19  Score=39.56  Aligned_cols=159  Identities=11%  Similarity=0.076  Sum_probs=96.6

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      ..+.+|+|.+...+|--+. ..+.|....+..+...+.+....-...+-|.+.+..+.|..+-...+.|.+.+..|....
T Consensus       122 stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~  200 (673)
T KOG4378|consen  122 STVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI  200 (673)
T ss_pred             ceeEEEEecCCcceeEEec-cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc
Confidence            4567788886555443222 234454444443322222221112233455666677788888888899999999887665


Q ss_pred             EEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE-EEEEcCCCCc-eeEEEecCCCeEEEEeCCCCeEE
Q psy8875         583 VLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN-MVIVSDIKWP-NGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       583 ~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~-~lv~~~l~~P-~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      .-.... -..-+||.+-|.+..|+++- |...+|...+....... .|+   ...| ..+++- ..|.+..+-..+++|.
T Consensus       201 ~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD~~s~~s~~~l~---y~~Plstvaf~-~~G~~L~aG~s~G~~i  275 (673)
T KOG4378|consen  201 FHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYDIRSQASTDRLT---YSHPLSTVAFS-ECGTYLCAGNSKGELI  275 (673)
T ss_pred             cchhhhccCCcCcceecCCccceEEEe-cccceEEEeecccccccceee---ecCCcceeeec-CCceEEEeecCCceEE
Confidence            443333 33447999999999999887 55678888776532211 121   1223 356664 5667777777788999


Q ss_pred             EEecCCCc
Q psy8875         660 SCDYNGGN  667 (734)
Q Consensus       660 ~~~~dG~~  667 (734)
                      .+++.+..
T Consensus       276 ~YD~R~~k  283 (673)
T KOG4378|consen  276 AYDMRSTK  283 (673)
T ss_pred             EEecccCC
Confidence            99988764

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=90.03  E-value=0.32  Score=32.55  Aligned_cols=25  Identities=40%  Similarity=1.080  Sum_probs=20.8

Q ss_pred             CCcc--cceeccCCceEEecCCCeeeC
Q psy8875         437 GSCS--QICLNEKGGFKCECVAGYIKD  461 (734)
Q Consensus       437 ~~C~--~~C~n~~g~~~C~C~~gy~~~  461 (734)
                      ..|.  ++|+++.++|.|.|+.||.+.
T Consensus         6 ~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           6 NPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCEEecCCCCeEeECCCCCccc
Confidence            3454  589999999999999999875

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.92  E-value=21  Score=35.02  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             cceeeeccCCcEEEEeC--CCCeEEEEeCCCCceEEEEcCCCCCc----eeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         550 DGLAVDWIYSHIYWTDA--HKNTIELANFEGTMRKVLVRSYLDEP----RSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~--~~~~I~~~~ldG~~~~~l~~~~l~~P----~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      .||.++  .++||-+-.  +..+|++.++.+..  ++.+..+..|    .||+.  ...++|...|.+ +.-+..+.+.-
T Consensus        49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~--~gd~~y~LTw~e-gvaf~~d~~t~  121 (262)
T COG3823          49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITK--LGDYFYQLTWKE-GVAFKYDADTL  121 (262)
T ss_pred             cceeee--CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceee--ccceEEEEEecc-ceeEEEChHHh
Confidence            456665  567776643  35689999988543  2333344422    35555  567788777754 33334333321


Q ss_pred             ceEEEEEcCCCC---ceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEEc-CCCCCCCCeEEEEECCEEEEEeCC
Q psy8875         624 HRNMVIVSDIKW---PNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVLY-SPQTLSHPFSISTFEDWLYWSDWQ  697 (734)
Q Consensus       624 ~~~~lv~~~l~~---P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~~-~~~~~~~P~gl~v~~~~lywtd~~  697 (734)
                        +.+  ....+   --||+-|  ..+|..+| ++..+..-+...  ...++.+. ....+..-.-|....|.||.--|.
T Consensus       122 --~~l--g~~~y~GeGWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~  194 (262)
T COG3823         122 --EEL--GRFSYEGEGWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQ  194 (262)
T ss_pred             --hhh--cccccCCcceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeee
Confidence              111  11111   1345543  44444333 333444333211  11111121 111222334467788999999999


Q ss_pred             CCceEEEeccCCCceEEEe
Q psy8875         698 QKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       698 ~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.+|.|+++.+|+.+..+.
T Consensus       195 t~~I~rI~p~sGrV~~wid  213 (262)
T COG3823         195 TTRIARIDPDSGRVVAWID  213 (262)
T ss_pred             ecceEEEcCCCCcEEEEEE
Confidence            9999999999999888774

>KOG0281|consensus

Probab=89.83  E-value=1.2  Score=46.24  Aligned_cols=150  Identities=14%  Similarity=0.154  Sum_probs=90.8

Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----E
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----N  626 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----~  626 (734)
                      |.++.. +++.++-+...+|.+.+.... ...+++ ..-...-++.+  .+|+|.-..  ....|.+-+|+....    .
T Consensus       241 LCLqyd-~rviisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf--~ng~mvtcS--kDrsiaVWdm~sps~it~rr  314 (499)
T KOG0281|consen  241 LCLQYD-ERVIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRF--SNGYMVTCS--KDRSIAVWDMASPTDITLRR  314 (499)
T ss_pred             Eeeecc-ceEEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEE--eCCEEEEec--CCceeEEEeccCchHHHHHH
Confidence            445533 458888888888888887543 334444 33445567777  456665443  346777777776542    2


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEE
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~  703 (734)
                      +++ +.....|.  ||+ ..++.++-++...|..-+++... .+++      -.|-.|||-  +.++|.++-...+.|.-
T Consensus       315 VLv-GHrAaVNv--Vdf-d~kyIVsASgDRTikvW~~st~efvRtl------~gHkRGIAClQYr~rlvVSGSSDntIRl  384 (499)
T KOG0281|consen  315 VLV-GHRAAVNV--VDF-DDKYIVSASGDRTIKVWSTSTCEFVRTL------NGHKRGIACLQYRDRLVVSGSSDNTIRL  384 (499)
T ss_pred             HHh-hhhhheee--ecc-ccceEEEecCCceEEEEeccceeeehhh------hcccccceehhccCeEEEecCCCceEEE
Confidence            222 22333343  443 34455566667778777766443 3333      245667776  88999999888888877


Q ss_pred             EeccCCCceEEEec
Q psy8875         704 ANKFTGDNLTAITG  717 (734)
Q Consensus       704 ~~~~~G~~~~~l~~  717 (734)
                      .+...|.-+.+|.+
T Consensus       385 wdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  385 WDIECGACLRVLEG  398 (499)
T ss_pred             EeccccHHHHHHhc
Confidence            77777766555543

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=89.74  E-value=0.71  Score=38.60  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=29.8

Q ss_pred             CCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875         544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANF  576 (734)
Q Consensus       544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l  576 (734)
                      .++..|.||++++..+.||+++...+.|.+...
T Consensus        51 ~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   51 SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            478899999999999999999999999988764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0273|consensus

Probab=89.73  E-value=30  Score=37.77  Aligned_cols=155  Identities=12%  Similarity=0.063  Sum_probs=90.2

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~  580 (734)
                      .+.+.+|||.. .+.+..+-...+.+...+.+ |....++   ....-.=++|-|...--|....+ .++|...+.-...
T Consensus       235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~  309 (524)
T KOG0273|consen  235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT  309 (524)
T ss_pred             cCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce
Confidence            35678899974 56777777777877777777 4332222   11222236677766555555443 4555555543333


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEE--eCCCCeE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV--DAKLNEI  658 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~--D~~~~~I  658 (734)
                      .+..+  .+...-++-||+....=|.+-. ..+.|.+..+++.....-+...-...++|-.++.+. |.-+  |-.+-+|
T Consensus       310 ~~q~f--~~~s~~~lDVdW~~~~~F~ts~-td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  310 VKQQF--EFHSAPALDVDWQSNDEFATSS-TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCSDDGTLKI  385 (524)
T ss_pred             EEEee--eeccCCccceEEecCceEeecC-CCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEecCCCeeEe
Confidence            33322  2333337888888877777763 346788888877655443434455578899885444 4444  3344567


Q ss_pred             EEEecCC
Q psy8875         659 SSCDYNG  665 (734)
Q Consensus       659 ~~~~~dG  665 (734)
                      +.+..++
T Consensus       386 Ws~~~~~  392 (524)
T KOG0273|consen  386 WSMGQSN  392 (524)
T ss_pred             eecCCCc
Confidence            7655443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.52  E-value=30  Score=36.27  Aligned_cols=159  Identities=15%  Similarity=0.066  Sum_probs=85.1

Q ss_pred             eccCCcEEEEeCC----CCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCCCeEEEEecCC----------------Cc
Q psy8875         555 DWIYSHIYWTDAH----KNTIELANFEGTMRKV-LVRSYLDEPRSLALNPIDGWMYWSDWGQ----------------NA  613 (734)
Q Consensus       555 D~~~~~lY~td~~----~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~g~LYwtd~~~----------------~~  613 (734)
                      .+.++.||.|+..    .+.|-+.+.....+++ -+....-.|-.|.+.|....|.+++-|-                .+
T Consensus        59 s~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~p  138 (305)
T PF07433_consen   59 SPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQP  138 (305)
T ss_pred             cCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCC
Confidence            4456788888654    6789999998444443 4455666899999998776888887331                01


Q ss_pred             eEEEe-ccCCCceEEEEE-cCC--CCceeEEEecCCCeEEEEeCCCC-------eEEEEecCCCceEEEEcCCC-----C
Q psy8875         614 KIERA-GMDGSHRNMVIV-SDI--KWPNGLTLDLVQRRLYWVDAKLN-------EISSCDYNGGNRRLVLYSPQ-----T  677 (734)
Q Consensus       614 ~I~~~-~ldG~~~~~lv~-~~l--~~P~glavD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~i~~~~~-----~  677 (734)
                      .|... ..+|........ ..+  ..-+=|+++ ..+.+.++--..+       -|...+.++ ..+.+ ..+.     .
T Consensus       139 sL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~-~~G~V~~a~Q~qg~~~~~~PLva~~~~g~-~~~~~-~~p~~~~~~l  215 (305)
T PF07433_consen  139 SLVYLDARSGALLEQVELPPDLHQLSIRHLAVD-GDGTVAFAMQYQGDPGDAPPLVALHRRGG-ALRLL-PAPEEQWRRL  215 (305)
T ss_pred             ceEEEecCCCceeeeeecCccccccceeeEEec-CCCcEEEEEecCCCCCccCCeEEEEcCCC-cceec-cCChHHHHhh
Confidence            22222 122322211110 000  112346666 3455555532111       222222222 12222 1111     1


Q ss_pred             CCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         678 LSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       678 ~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      -.+--+|++.  ++.+.+|....+.+...+..+|..+..+.
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP  256 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc
Confidence            1233467774  45788888888888888888888766543

>KOG2111|consensus

Probab=89.47  E-value=26  Score=36.35  Aligned_cols=140  Identities=13%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      .++.|.|-|.....|.-..+.+..+            +|-+.  +.+|-+.-   ..+|++....-..+..-..+....|
T Consensus        74 pNkviIWDD~k~~~i~el~f~~~I~------------~V~l~--r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   74 PNKVIIWDDLKERCIIELSFNSEIK------------AVKLR--RDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNP  136 (346)
T ss_pred             CceEEEEecccCcEEEEEEecccee------------eEEEc--CCeEEEEe---cCeEEEEEcCCChhheeeeecccCC
Confidence            3455667666555554444444333            33332  23333333   2455555544333333333456678


Q ss_pred             eeEE-EecCCCeEEEEe--CCCCeEEEEecCCCce--EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEE-eccCC
Q psy8875         637 NGLT-LDLVQRRLYWVD--AKLNEISSCDYNGGNR--RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKA-NKFTG  709 (734)
Q Consensus       637 ~gla-vD~~~~~LYw~D--~~~~~I~~~~~dG~~~--~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~-~~~~G  709 (734)
                      +||- +.+..+.-+.+=  .+.+.|..+++.-...  ..++..+  ...-.-|++ -.|.+..|-..++.|+|+ +..+|
T Consensus       137 kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g  214 (346)
T KOG2111|consen  137 KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDTEDG  214 (346)
T ss_pred             CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence            8874 565666666554  4567899988876655  2333221  112223455 568899999888988877 66777


Q ss_pred             CceEEE
Q psy8875         710 DNLTAI  715 (734)
Q Consensus       710 ~~~~~l  715 (734)
                      +.+..+
T Consensus       215 ~~l~E~  220 (346)
T KOG2111|consen  215 TLLQEL  220 (346)
T ss_pred             cEeeee
Confidence            766654

>PRK13616 lipoprotein LpqB; Provisional

Probab=89.36  E-value=39  Score=39.29  Aligned_cols=156  Identities=15%  Similarity=0.038  Sum_probs=85.2

Q ss_pred             CCccceeeeccCCcEEEEeC-------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC---------
Q psy8875         547 TIADGLAVDWIYSHIYWTDA-------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG---------  610 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~-------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~---------  610 (734)
                      ..+...+|.+.++.+.++..       ...+|++....|..+.++....+   ..-.++|..+.|++...+         
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~---t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSL---TRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCC---CCceECCCCCceEEEecCcceEEEecc
Confidence            45678888888888776652       24578888887666443322223   334556655555554312         


Q ss_pred             -CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE---EecCCCceEE-----EEcCCCCCC-C
Q psy8875         611 -QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS---CDYNGGNRRL-----VLYSPQTLS-H  680 (734)
Q Consensus       611 -~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~---~~~dG~~~~~-----i~~~~~~~~-~  680 (734)
                       ..+.|++..+++.....   ..-..+..|.+.+.+.+|.++-.  ++|+.   +..+++.++.     +.   ..+. .
T Consensus       427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~---~~l~~~  498 (591)
T PRK13616        427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVG---PGLGDT  498 (591)
T ss_pred             CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEee---cccCCc
Confidence             22455555555543322   11123678889888888888763  46666   3434443332     21   1122 2


Q ss_pred             CeEEEE-ECCEEEEEeCCC-CceEEEeccCCCceEE
Q psy8875         681 PFSIST-FEDWLYWSDWQQ-KAIYKANKFTGDNLTA  714 (734)
Q Consensus       681 P~gl~v-~~~~lywtd~~~-~~v~~~~~~~G~~~~~  714 (734)
                      +.+|+. .++.|++...+. ..|+++.. +|...+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~v-DG~~~~~  533 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNL-DGSNSDA  533 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEec-CCccccc
Confidence            466666 456676654332 34777654 4554443

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.31  E-value=1.6  Score=30.54  Aligned_cols=41  Identities=15%  Similarity=0.142  Sum_probs=29.4

Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEe
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALN  598 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD  598 (734)
                      .+++||+++...+.|.++++.......-+ .....|++|+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i-~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATI-PVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEE-ECCCCCceEEeC
Confidence            46789999999999999987544332223 235789999874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2048|consensus

Probab=89.30  E-value=44  Score=38.18  Aligned_cols=194  Identities=13%  Similarity=0.084  Sum_probs=109.2

Q ss_pred             cccccccceeeeee---ccceEEeecCCCceEEEecC----CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE
Q psy8875         468 CKAAEGHASLLFAR---KHDIRKISLDHHEMTAIVNS----TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV  540 (734)
Q Consensus       468 C~~~~~~~~l~~~~---~~~I~~i~l~~~~~~~l~~~----~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~  540 (734)
                      |.++.+.+.++...   +..|+++..++......+..    +.....+.+....+++|+.......+..+.+...+..+.
T Consensus       387 ~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel  466 (691)
T KOG2048|consen  387 CAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKEL  466 (691)
T ss_pred             eeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhh
Confidence            55555555444322   45677777666222222221    223334444444677777765666677777765444332


Q ss_pred             EE--e-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEe-CCCCeEEEEecCCCceEE
Q psy8875         541 VI--E-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALN-PIDGWMYWSDWGQNAKIE  616 (734)
Q Consensus       541 ~~--~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD-~~~g~LYwtd~~~~~~I~  616 (734)
                      .-  . .......-|++-+.++.|-+++ ..+.|++.++.+...+.++..--...++.++. +.+++|-+++.  +.+++
T Consensus       467 ~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats--~nQv~  543 (691)
T KOG2048|consen  467 KSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATS--NNQVF  543 (691)
T ss_pred             hccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEec--CCeEE
Confidence            21  1 1233455788887777777776 56899999999877666552222444566666 45667777764  35666


Q ss_pred             EeccCCCceE--------EE---EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         617 RAGMDGSHRN--------MV---IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       617 ~~~ldG~~~~--------~l---v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      -.++...+..        .+   .......-.|+.+|+.+...+|.-. .+-+..++.++
T Consensus       544 efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~~-a~w~~~id~~~  602 (691)
T KOG2048|consen  544 EFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVYD-AHWSCLIDFSL  602 (691)
T ss_pred             EEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEEc-CcEEEEEecCC
Confidence            6666322211        01   1112334468999988877777743 34555555554

>KOG0772|consensus

Probab=89.19  E-value=30  Score=38.23  Aligned_cols=160  Identities=12%  Similarity=0.124  Sum_probs=86.8

Q ss_pred             EEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCC----CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEED----KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~----~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....|+|.+...|.+-...+.++..+++.... .+++....    -..|..-|.+. .++++.+--..+.|...++.+..
T Consensus       272 t~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~  350 (641)
T KOG0772|consen  272 TCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRT  350 (641)
T ss_pred             eccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcc
Confidence            34468898999999887777766666653322 33333211    12344556663 35566665667888888774433


Q ss_pred             eEE--EEc---CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----------------------EEEEEcCC
Q psy8875         581 RKV--LVR---SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----------------------NMVIVSDI  633 (734)
Q Consensus       581 ~~~--l~~---~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----------------------~~lv~~~l  633 (734)
                      .+.  .+.   ........|++.+..++| .+- +....+..-+|.-.+.                      ..|+.+..
T Consensus       351 v~p~~~vk~AH~~g~~Itsi~FS~dg~~L-lSR-g~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGt  428 (641)
T KOG0772|consen  351 VRPVMKVKDAHLPGQDITSISFSYDGNYL-LSR-GFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGT  428 (641)
T ss_pred             cccceEeeeccCCCCceeEEEeccccchh-hhc-cCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecc
Confidence            322  121   223356788887654433 222 2222333333322211                      12233344


Q ss_pred             CCceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEE
Q psy8875         634 KWPNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~  672 (734)
                      ..|++.+    .+.|||-|. ....|+++++++.....++
T Consensus       429 S~~~~~~----~g~L~f~d~~t~d~v~ki~i~~aSvv~~~  464 (641)
T KOG0772|consen  429 SAPNGMT----AGTLFFFDRMTLDTVYKIDISTASVVRCL  464 (641)
T ss_pred             cccCCCC----CceEEEEeccceeeEEEecCCCceEEEEe
Confidence            4566654    457888875 4568899998866555444

>KOG0319|consensus

Probab=89.16  E-value=17  Score=41.67  Aligned_cols=179  Identities=9%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             eeccceEEeecCCCceE-EEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeee
Q psy8875         480 ARKHDIRKISLDHHEMT-AIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVD  555 (734)
Q Consensus       480 ~~~~~I~~i~l~~~~~~-~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD  555 (734)
                      .....|..+++...... ...  .......++++.+.+..||.+- ..+.|....+..|... ..... .-.....+|+|
T Consensus        37 ~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~-He~Pvi~ma~~  114 (775)
T KOG0319|consen   37 ACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAI-HEAPVITMAFD  114 (775)
T ss_pred             ecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhc-cCCCeEEEEEc
Confidence            34455666666544432 111  1344667888888777776653 4455666677755321 11110 12234578999


Q ss_pred             ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCe-EEEEecCCCceEEEeccCCCce-EEEEEcCC
Q psy8875         556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW-MYWSDWGQNAKIERAGMDGSHR-NMVIVSDI  633 (734)
Q Consensus       556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~-LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l  633 (734)
                      +.+ .|.-+-...++|.+.++.+.+...-+.+...-...|.+.|.-.+ |..+. ...+.+...++.-... ..+.....
T Consensus       115 ~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg-~~D~~v~vwnl~~~~tcl~~~~~H~  192 (775)
T KOG0319|consen  115 PTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG-ATDGTVRVWNLNDKRTCLHTMILHK  192 (775)
T ss_pred             CCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeec-CCCceEEEEEcccCchHHHHHHhhh
Confidence            665 66666666889999999999888777665555667777765443 11111 2235666665542211 11112234


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      ....+|++-.....| ++-.....|...++
T Consensus       193 S~vtsL~~~~d~~~~-ls~~RDkvi~vwd~  221 (775)
T KOG0319|consen  193 SAVTSLAFSEDSLEL-LSVGRDKVIIVWDL  221 (775)
T ss_pred             hheeeeeeccCCceE-EEeccCcEEEEeeh
Confidence            456778876443333 33334455666665

>KOG3914|consensus

Probab=89.13  E-value=10  Score=40.35  Aligned_cols=153  Identities=11%  Similarity=0.069  Sum_probs=95.1

Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCce-EEE--EcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccC-CCceEEEEEc
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMR-KVL--VRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMD-GSHRNMVIVS  631 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~-~~l--~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ld-G~~~~~lv~~  631 (734)
                      ..+.|+.++.. .++.++.++++.+ ..+  ....-..|++|.+....-++-++|.. ....+.....+ |..+.++  .
T Consensus        73 ~~~llAv~~~~-K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l--G  149 (390)
T KOG3914|consen   73 SGRLVAVATSS-KQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL--G  149 (390)
T ss_pred             CceEEEEEeCC-CceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh--h
Confidence            44555666553 4444444444332 111  11234578888888777777777742 22333333333 5444433  4


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE-EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR-LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~-~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+..-..++|.+....|.-+|. ..+|+...+.+.... .+..+  +-..-..|++..+++.|+-.+.+.|+.-+..+|+
T Consensus       150 hvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclG--H~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLG--HKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccc--cHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence            4555678889887888887774 467888888776432 22211  1223457899999999999999999999999999


Q ss_pred             ceEEE
Q psy8875         711 NLTAI  715 (734)
Q Consensus       711 ~~~~l  715 (734)
                      .+..+
T Consensus       227 ~L~t~  231 (390)
T KOG3914|consen  227 LLDTC  231 (390)
T ss_pred             ccccc
Confidence            87665

>KOG1274|consensus

Probab=89.13  E-value=36  Score=40.28  Aligned_cols=152  Identities=16%  Similarity=0.116  Sum_probs=87.2

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCC-CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEG-SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g-~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      -..|.|++....|+..+ .++.|.+..-... ...+.+-. ......+||.+   .+.|.+-+..+.|.++.++......
T Consensus        16 ~t~i~~d~~gefi~tcg-sdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCG-SDGDIRKWKTNSDEEEPETIDI-SGELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             eEEEEEcCCCCEEEEec-CCCceEEeecCCcccCCchhhc-cCceeEEEeec---ccceEEeeccceEEEeeCCCCCccc
Confidence            45678888888777765 3455555543322 12222211 12234566665   3467777778999999987766665


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      |+..-....+.++|+.. |.+-... +..-.|...++ |++..+++ ...-....+|.+|+.+..|-++. ..+.|..++
T Consensus        91 iL~Rftlp~r~~~v~g~-g~~iaag-sdD~~vK~~~~~D~s~~~~l-rgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~  166 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSGS-GKMIAAG-SDDTAVKLLNLDDSSQEKVL-RGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWD  166 (933)
T ss_pred             eeeeeeccceEEEEecC-CcEEEee-cCceeEEEEeccccchheee-cccCCceeeeeEcCCCCEEEEEe-cCceEEEEE
Confidence            66444446688999854 4444333 23356666666 44444443 22223345777776555554444 456777777


Q ss_pred             cCC
Q psy8875         663 YNG  665 (734)
Q Consensus       663 ~dG  665 (734)
                      ++.
T Consensus       167 ~~~  169 (933)
T KOG1274|consen  167 LQD  169 (933)
T ss_pred             ccc
Confidence            653

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=88.72  E-value=30  Score=35.33  Aligned_cols=178  Identities=16%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             cCCeEEEEEeCCC-cEEEEec------CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE-EE
Q psy8875         513 RTGMIFWSDISEK-KIYKAPI------DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK-VL  584 (734)
Q Consensus       513 ~~~~lyw~d~~~~-~I~~~~l------~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l  584 (734)
                      ..+++||++...+ .|+....      .+...++..++.. ..-.|-.|  -++.||+--..+..|.+.+|..+... ..
T Consensus        29 ~~~~iy~~~~~~~~~v~ey~~~~~f~~~~~~~~~~~Lp~~-~~GtG~vV--YngslYY~~~~s~~IvkydL~t~~v~~~~  105 (250)
T PF02191_consen   29 DSEKIYVTSGFSGNTVYEYRNYEDFLRNGRSSRTYKLPYP-WQGTGHVV--YNGSLYYNKYNSRNIVKYDLTTRSVVARR  105 (250)
T ss_pred             CCCCEEEECccCCCEEEEEcCHhHHhhcCCCceEEEEece-eccCCeEE--ECCcEEEEecCCceEEEEECcCCcEEEEE
Confidence            3678888876543 3433321      1111233333322 22334555  37999999999999999999876654 22


Q ss_pred             -EcC-C----------CCCceeEEEeCCCCe--EEEEecCCCceEEEeccCCCceEEE--EEcCCCCc---eeEEEecCC
Q psy8875         585 -VRS-Y----------LDEPRSLALNPIDGW--MYWSDWGQNAKIERAGMDGSHRNMV--IVSDIKWP---NGLTLDLVQ  645 (734)
Q Consensus       585 -~~~-~----------l~~P~~iavD~~~g~--LYwtd~~~~~~I~~~~ldG~~~~~l--v~~~l~~P---~glavD~~~  645 (734)
                       +.. .          ...-..+|||. +|.  ||-+. ...+.|..+.+|-....+.  ....+..+   +++-   .=
T Consensus       106 ~L~~A~~~n~~~y~~~~~t~iD~AvDE-~GLWvIYat~-~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFm---vC  180 (250)
T PF02191_consen  106 ELPGAGYNNRFPYYWSGYTDIDFAVDE-NGLWVIYATE-DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFM---VC  180 (250)
T ss_pred             ECCccccccccceecCCCceEEEEEcC-CCEEEEEecC-CCCCcEEEEeeCcccCceEEEEEeccCchhhcceee---Ee
Confidence             211 1          12235899995 553  33333 3345687777775544332  22333333   2333   36


Q ss_pred             CeEEEEeCCC---CeEE-EEecC-CCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCC
Q psy8875         646 RRLYWVDAKL---NEIS-SCDYN-GGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQ  698 (734)
Q Consensus       646 ~~LYw~D~~~---~~I~-~~~~d-G~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~  698 (734)
                      |.||.++...   .+|. .+|+. ++...+-+.-.........|..  .+.+||.=|-+.
T Consensus       181 GvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd~G~  240 (250)
T PF02191_consen  181 GVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWDNGY  240 (250)
T ss_pred             eEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEECCe
Confidence            8999998654   3343 33433 2222222211122223334555  478888866543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0270|consensus

Probab=88.33  E-value=37  Score=36.81  Aligned_cols=173  Identities=10%  Similarity=0.028  Sum_probs=102.9

Q ss_pred             eEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC--CceEEEEeCCCCCccceeeeccCCcE
Q psy8875         485 IRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG--SERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       485 I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g--~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      |..=+++..+...+++ ..+.+..++|++.+..+..+....+++...+...-  ......+.   ...+-+++++..-+.
T Consensus       268 V~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---g~VEkv~w~~~se~~  344 (463)
T KOG0270|consen  268 VKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---GEVEKVAWDPHSENS  344 (463)
T ss_pred             EEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---cceEEEEecCCCcee
Confidence            3333454444433333 56778899999988888888777777776665421  12333332   356778888888888


Q ss_pred             EEEeCCCCeEEEEeCCC--CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCce
Q psy8875         562 YWTDAHKNTIELANFEG--TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPN  637 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG--~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~  637 (734)
                      |+.....++++-+++..  .-..++. ..-....+|.+....-.|..|... ...+...++++...+.+...  ++..-.
T Consensus       345 f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~-d~~Vklw~~~~~~~~~v~~~~~~~~rl~  422 (463)
T KOG0270|consen  345 FFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTAST-DKVVKLWKFDVDSPKSVKEHSFKLGRLH  422 (463)
T ss_pred             EEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccc-cceEEEEeecCCCCccccccccccccee
Confidence            88887778888777643  2222232 233467889998887777777633 34454555555554433322  233344


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      -++.++....+|..-...+.+...+
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd  447 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWD  447 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEee
Confidence            5566666666665554444444444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.32  E-value=41  Score=35.25  Aligned_cols=229  Identities=10%  Similarity=0.008  Sum_probs=123.4

Q ss_pred             eeeeeec--cceEEeecCCCceEEEec-C-CcceEE-EeeeccCCeEEEEEe----CCCcEEEEecCCCCceEEEEeCCC
Q psy8875         476 SLLFARK--HDIRKISLDHHEMTAIVN-S-TKSATA-IDFVFRTGMIFWSDI----SEKKIYKAPIDEGSERTVVIEEDK  546 (734)
Q Consensus       476 ~l~~~~~--~~I~~i~l~~~~~~~l~~-~-~~~~~~-i~~d~~~~~lyw~d~----~~~~I~~~~l~~g~~~~~~~~~~~  546 (734)
                      .+.|+.+  .....++..+......+. . ...-.| -.|++....||-++.    ..+.|-..+...+..+.--+...-
T Consensus        19 avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~G   98 (305)
T PF07433_consen   19 AVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHG   98 (305)
T ss_pred             EEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCC
Confidence            4555554  234455554444333322 1 122222 235556777777743    345677777663443333344444


Q ss_pred             CCccceeeeccCCcEEEEeCCC-----------------CeEEEE-eCCCCceEEE-Ec--CCCCCceeEEEeCCCCeEE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHK-----------------NTIELA-NFEGTMRKVL-VR--SYLDEPRSLALNPIDGWMY  605 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~-----------------~~I~~~-~ldG~~~~~l-~~--~~l~~P~~iavD~~~g~LY  605 (734)
                      -.|.-|.+.+.+..|.+++.+-                 ..|... ..+|...... +.  ......+.||++.. |.+.
T Consensus        99 IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~-G~V~  177 (305)
T PF07433_consen   99 IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD-GTVA  177 (305)
T ss_pred             cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC-CcEE
Confidence            5688888888777888886541                 112222 2233332221 11  12236789999974 6666


Q ss_pred             EEe-cC-----CCceEEEeccCCCceEEEEEc----C-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC
Q psy8875         606 WSD-WG-----QNAKIERAGMDGSHRNMVIVS----D-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS  674 (734)
Q Consensus       606 wtd-~~-----~~~~I~~~~ldG~~~~~lv~~----~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~  674 (734)
                      +.. +.     ..+-|.....++..+..-...    . -.+--.|+++...+.|..+-...+.+...+.........   
T Consensus       178 ~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~---  254 (305)
T PF07433_consen  178 FAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS---  254 (305)
T ss_pred             EEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec---
Confidence            654 21     123444444443322111111    1 134567999877788889988888988875443332222   


Q ss_pred             CCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         675 PQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       675 ~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                       ..+..--||+...+. |+...+.+.|+++.....+
T Consensus       255 -~~l~D~cGva~~~~~-f~~ssG~G~~~~~~~~~~~  288 (305)
T PF07433_consen  255 -VPLPDACGVAPTDDG-FLVSSGQGQLIRLSPDGPQ  288 (305)
T ss_pred             -cccCceeeeeecCCc-eEEeCCCccEEEccCcccc
Confidence             235667788886666 5555666888877654443

>KOG1273|consensus

Probab=86.67  E-value=43  Score=34.82  Aligned_cols=207  Identities=10%  Similarity=0.078  Sum_probs=112.7

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+..|.|.. .++...+......|...++..|+....+ +.   ....+..+.+..++..++-.....-.+..++...
T Consensus        65 ~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~---spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~  140 (405)
T KOG1273|consen   65 VRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD---SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK  140 (405)
T ss_pred             ccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEEcc---CccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence            44567788985 5666677777788888888767653322 22   2245667777788888776655545555555433


Q ss_pred             eEEEEcCC---C-CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---CCCceeEEEecCCCeEEEEeC
Q psy8875         581 RKVLVRSY---L-DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---IKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       581 ~~~l~~~~---l-~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---l~~P~glavD~~~~~LYw~D~  653 (734)
                      .++|....   + ..+.-...|+...+||.-.  ..++|...+.+...  .+.+-+   ...-..|.+. ..++.+.+..
T Consensus       141 h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt--sKGkllv~~a~t~e--~vas~rits~~~IK~I~~s-~~g~~liiNt  215 (405)
T KOG1273|consen  141 HSVLPKDDDGDLNSSASHGVFDRRGKYIITGT--SKGKLLVYDAETLE--CVASFRITSVQAIKQIIVS-RKGRFLIINT  215 (405)
T ss_pred             eeeccCCCccccccccccccccCCCCEEEEec--CcceEEEEecchhe--eeeeeeechheeeeEEEEe-ccCcEEEEec
Confidence            33443221   1 2334446777666666554  24777777665432  222111   2334456664 5666667776


Q ss_pred             CCCeEEEEecC-----CCceEEEE--c---CCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875         654 KLNEISSCDYN-----GGNRRLVL--Y---SPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       654 ~~~~I~~~~~d-----G~~~~~i~--~---~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      ....|..+++.     |+...+-.  .   .-..+++- .+-+  .+.+|.-+....++||.--+..|..+++|-++
T Consensus       216 sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk-~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~  291 (405)
T KOG1273|consen  216 SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWK-KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT  291 (405)
T ss_pred             CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhh-heeecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence            66677776643     22211110  0   00011111 1222  34455555566667777777777777777543

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=86.62  E-value=0.16  Score=48.01  Aligned_cols=86  Identities=26%  Similarity=0.550  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccC---CCcceeecCCCcEecCCCCcccccc--CcCCCCCc--ccceeccC
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDL---PVGYMCECNEGYKLSSNRHTCIDID--ECETPGSC--SQICLNEK  447 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~---~~~~~C~C~~G~~l~~~~~~C~~~~--eC~~~~~C--~~~C~n~~  447 (734)
                      +|..||......|-.++|.....+ +..|+-.   +....|+|.-|+.+. ++..|.-..  +|+.  .|  .++|....
T Consensus        73 ~C~~gY~~~~~vCvp~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~-dn~kCtk~G~T~C~L--KCk~nE~CK~~~  148 (197)
T PF06247_consen   73 DCINGYILKQGVCVPNKCNNKDCG-SGKCILDPDNPNNPTCSCNIGKVPD-DNKKCTKTGETKCSL--KCKENEECKLVD  148 (197)
T ss_dssp             EE-TTEEESSSSEEEGGGSS---T-TEEEEEEEGGGSEEEEEE-TEEETT-TTTESEEEE----------TTTEEEEEET
T ss_pred             ecccCceeeCCeEchhhcCceecC-CCeEEecCCCCCCceeEeeeceEec-cCCcccCCCccceee--ecCCCcceeeeC
Confidence            455555433334444444432222 2355543   345699999999843 677775332  2321  23  24788889


Q ss_pred             CceEEecCCCeeeCCCC
Q psy8875         448 GGFKCECVAGYIKDPHH  464 (734)
Q Consensus       448 g~~~C~C~~gy~~~~~~  464 (734)
                      +-|+|.|.+|+.++..+
T Consensus       149 ~~Y~C~~~~~~~~~~~~  165 (197)
T PF06247_consen  149 GYYKCVCKEGFPGDGEG  165 (197)
T ss_dssp             TEEEEEE-TT-EEETTT
T ss_pred             cEEEeecCCCCCCCCCc
Confidence            99999999999887543

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=86.39  E-value=34  Score=33.40  Aligned_cols=121  Identities=7%  Similarity=0.042  Sum_probs=68.9

Q ss_pred             cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875         526 KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM  604 (734)
Q Consensus       526 ~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L  604 (734)
                      .|++++..+.....+.+. .-..+..++..|.+..+.+... ...+|...++.+.....+.   -...+.|...|...+|
T Consensus        40 ~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~---~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG---TQPRNTISWSPDGRFL  115 (194)
T ss_pred             EEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec---CCCceEEEECCCCCEE
Confidence            456665553322222222 1223667777777777665543 2457888888755444332   2345679999988788


Q ss_pred             EEEecCC-CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         605 YWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       605 Ywtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      ..+..+. .+.|...+++  ..+.+..........+++++.+.+|..+.
T Consensus       116 ~~~g~~n~~G~l~~wd~~--~~~~i~~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVR--KKKKISTFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             EEEEccCCCcEEEEEECC--CCEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence            7776543 3567776665  34444433334456777776666655444

>KOG0268|consensus

Probab=86.34  E-value=17  Score=38.37  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=81.6

Q ss_pred             cceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+.-++...+ ...+.....-+.||.++. +..++..|  .+.|.+..+++ ....+++.  -....||.-.| ...+
T Consensus        89 G~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~-~p~~tilg--~s~~~gIdh~~-~~~~  161 (433)
T KOG0268|consen   89 GEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDG-PPLHTILG--KSVYLGIDHHR-KNSV  161 (433)
T ss_pred             ceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccC-Ccceeeec--ccccccccccc-cccc
Confidence            344444554332 223333444567777774 44555544  45566655553 22222222  22344555443 2445


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEE
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~gla  640 (734)
                      |.|-.  ..|...+..-.....-+.-+......+...|..-.|.-+- +....|...++-- +..+.++. + ..+|+|+
T Consensus       162 FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD~R~~~Pl~KVi~-~-mRTN~Is  236 (433)
T KOG0268|consen  162 FATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYDLRQASPLKKVIL-T-MRTNTIC  236 (433)
T ss_pred             ccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEecccCCccceeee-e-cccccee
Confidence            55433  2344444332222111111222334455555544444443 2235565555532 22222221 2 2488999


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      +.| +...|++-.....|+.+++.-
T Consensus       237 wnP-eafnF~~a~ED~nlY~~DmR~  260 (433)
T KOG0268|consen  237 WNP-EAFNFVAANEDHNLYTYDMRN  260 (433)
T ss_pred             cCc-cccceeeccccccceehhhhh
Confidence            998 888888877777788777543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=86.15  E-value=43  Score=34.29  Aligned_cols=202  Identities=14%  Similarity=0.122  Sum_probs=107.3

Q ss_pred             ceEEEeeeccCCeEEEEE--eCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE--eCCCC
Q psy8875         504 SATAIDFVFRTGMIFWSD--ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA--NFEGT  579 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d--~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~--~ldG~  579 (734)
                      .+...++.+..+.+.++.  .....++....+ +....++...   .....++|.. +.++..+.........  ..+|.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~---~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGG---SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCC---ccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence            345556665566666655  445567776655 3333333222   3445577755 7777777654443333  23455


Q ss_pred             ceEEEEc-CCCC-CceeEEEeCCCCeEE-EEecCCCceEEEecc--CCCc-eEEE------EEcCCCCceeEEEecCCCe
Q psy8875         580 MRKVLVR-SYLD-EPRSLALNPIDGWMY-WSDWGQNAKIERAGM--DGSH-RNMV------IVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       580 ~~~~l~~-~~l~-~P~~iavD~~~g~LY-wtd~~~~~~I~~~~l--dG~~-~~~l------v~~~l~~P~glavD~~~~~  647 (734)
                      ...+.+. ..+. ....|.|.|..-+|- +...+...+|+.+..  ++.. ...+      ....+..+..+++-.....
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            5444443 2232 678999998876654 443333466766643  2222 1111      1122334556777533444


Q ss_pred             EEEEeCCCCeEEE-EecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         648 LYWVDAKLNEISS-CDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       648 LYw~D~~~~~I~~-~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ++.+......+.. +..+|.....+...  ....| .+++  ....+|.++.+  .|++  ...|...+.+..
T Consensus       180 ~V~~~~~~~~~~~~v~~dG~~~~~l~~~--~~~~~-v~a~~~~~~~~~~t~~~--~~~~--~~~~~~W~~v~~  245 (253)
T PF10647_consen  180 VVLGRSAGGPVVRLVSVDGGPSTPLPSV--NLGVP-VVAVAASPSTVYVTDDG--GVLQ--SRSGASWREVPG  245 (253)
T ss_pred             EEEeCCCCCceeEEEEccCCcccccCCC--CCCcc-eEEeeCCCcEEEEECCC--cEEE--CCCCCcceEccC
Confidence            4444444444555 77888877766321  12222 3333  56678888754  5665  456666665543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0310|consensus

Probab=86.09  E-value=23  Score=38.77  Aligned_cols=149  Identities=7%  Similarity=0.013  Sum_probs=87.4

Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         558 YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       558 ~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      .|+|+.+--..+.|.++++..+.....+........-+-+.|..+.++.+-. ....+...++++.....-+.....+.+
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s-Dd~v~k~~d~s~a~v~~~l~~htDYVR  157 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS-DDKVVKYWDLSTAYVQAELSGHTDYVR  157 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC-CCceEEEEEcCCcEEEEEecCCcceeE
Confidence            4777777777888988885542211111222333345556667777777752 233444444554443323344455677


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeE--EEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS--ISTFEDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~g--l~v~~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                      .+++-+.++.|+++-+..+.|...+......++ +.  -.-..|..  |++..+.++.+-.+ +.|...+..+|..
T Consensus       158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-~e--lnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~q  229 (487)
T KOG0310|consen  158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-VE--LNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQ  229 (487)
T ss_pred             eeccccCCCeEEEecCCCceEEEEEeccCCcee-EE--ecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCce
Confidence            888888899999999999999888866553222 22  11345543  34456677776655 4566666665543

>KOG4283|consensus

Probab=85.97  E-value=45  Score=34.35  Aligned_cols=210  Identities=10%  Similarity=0.052  Sum_probs=96.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeC-----CCCCcc-------ceeeeccCCcEEEEeC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEE-----DKTIAD-------GLAVDWIYSHIYWTDA  566 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~-----~~~~p~-------glAvD~~~~~lY~td~  566 (734)
                      ....+.+|.+|+.++++.++...++.|...++...+.  ..-++..     ....+.       .+---|...-+|.+.+
T Consensus        42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS  121 (397)
T KOG4283|consen   42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS  121 (397)
T ss_pred             CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence            3456778899998999888888889998888875432  1111110     011111       1111122233555555


Q ss_pred             CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875         567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV  644 (734)
Q Consensus       567 ~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~  644 (734)
                      ..+.+.|.+.+..+..+.+.-. .....-|..|.  ..-|.-+.. ...+|...+|....-...++..-....++.+.+.
T Consensus       122 FDhtlKVWDtnTlQ~a~~F~me-~~VYshamSp~a~sHcLiA~gt-r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  122 FDHTLKVWDTNTLQEAVDFKME-GKVYSHAMSPMAMSHCLIAAGT-RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccceEEEeecccceeeEEeecC-ceeehhhcChhhhcceEEEEec-CCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            5666666666655444333110 00001111111  111222211 2345666666433333334333333444445555


Q ss_pred             CCeEEEEeCCCCeEEEEecC---CC---------ceEEEEc-CCCCCCCCeEEEEEC-CEEEEEeCCCCceEEEeccCCC
Q psy8875         645 QRRLYWVDAKLNEISSCDYN---GG---------NRRLVLY-SPQTLSHPFSISTFE-DWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~d---G~---------~~~~i~~-~~~~~~~P~gl~v~~-~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+.|..+-+..++|..-++.   |.         .+..++. .......-+|++... +.-.|+-....++...+..+|.
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            56665555544544433321   21         1111221 112223346777743 3333444444556556666666


Q ss_pred             ce
Q psy8875         711 NL  712 (734)
Q Consensus       711 ~~  712 (734)
                      +.
T Consensus       280 nt  281 (397)
T KOG4283|consen  280 NT  281 (397)
T ss_pred             cc
Confidence            53

>KOG1539|consensus

Probab=85.70  E-value=69  Score=37.65  Aligned_cols=158  Identities=14%  Similarity=0.103  Sum_probs=82.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      .....+++++.-.+.. +.....+.|-++++..|-.+.....  ..-....|||+|-.+ ++.++-...+-+...++..+
T Consensus       448 ~~~~~av~vs~CGNF~-~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFV-FIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             CcceEEEEEeccCceE-EEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCc
Confidence            3467788888655544 4556788899999987655444421  123457899999554 44555444677777777665


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ....-+ .-...+.+|...-..+ |+.+... .-+|...++--......+.+....-+.+++.+.++.|..+. ...+|.
T Consensus       526 ~l~~~l-~l~~~~~~iv~hr~s~-l~a~~~d-df~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas-mD~tIr  601 (910)
T KOG1539|consen  526 VLKKSL-RLGSSITGIVYHRVSD-LLAIALD-DFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS-MDSTIR  601 (910)
T ss_pred             ceeeee-ccCCCcceeeeeehhh-hhhhhcC-ceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee-cCCcEE
Confidence            422111 1111223333322222 1211111 23444444321110001112234567889987777766665 346788


Q ss_pred             EEecCC
Q psy8875         660 SCDYNG  665 (734)
Q Consensus       660 ~~~~dG  665 (734)
                      ..|+-.
T Consensus       602 ~wDlpt  607 (910)
T KOG1539|consen  602 TWDLPT  607 (910)
T ss_pred             EEeccC
Confidence            877543

>KOG0282|consensus

Probab=85.44  E-value=16  Score=39.93  Aligned_cols=193  Identities=11%  Similarity=0.070  Sum_probs=97.9

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL  584 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l  584 (734)
                      +.++.|.. .+.-|.+-.....|.-.+...|..... +. .-..|.-+.+.+.+.++|++-...++|...++......--
T Consensus       261 Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~-f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe  337 (503)
T KOG0282|consen  261 VRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSR-FH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE  337 (503)
T ss_pred             hhhhhccc-cCCeeeeeecceeeeeeccccceEEEE-Ee-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence            34455543 344445544455565555554432222 22 2235677777777789999998899999988754431111


Q ss_pred             EcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         585 VRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       585 ~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      +...|.....|.+=+ .|+-|++.... .-+||-....-.. +.++... ...| .|++- .++..+.+.+..+.|..+.
T Consensus       338 Yd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~i-k~i~~~~~hsmP-~~~~~-P~~~~~~aQs~dN~i~ifs  413 (503)
T KOG0282|consen  338 YDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPI-KNIADPEMHTMP-CLTLH-PNGKWFAAQSMDNYIAIFS  413 (503)
T ss_pred             HHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccc-hhhcchhhccCc-ceecC-CCCCeehhhccCceEEEEe
Confidence            224566666777754 34555554322 2244433222111 1111112 2223 46664 5666667777777766655


Q ss_pred             cCC---CceEEEEcCCCCCCC-------CeEEEE----ECCEEEEEeCCCCceEEE
Q psy8875         663 YNG---GNRRLVLYSPQTLSH-------PFSIST----FEDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       663 ~dG---~~~~~i~~~~~~~~~-------P~gl~v----~~~~lywtd~~~~~v~~~  704 (734)
                      ..-   .+++....+...-+.       |.|=.+    .+|++|+=||++-++++.
T Consensus       414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~  469 (503)
T KOG0282|consen  414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSK  469 (503)
T ss_pred             cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhc
Confidence            332   222222222111222       332222    256777778877665543

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=85.12  E-value=0.99  Score=42.86  Aligned_cols=59  Identities=34%  Similarity=0.924  Sum_probs=41.6

Q ss_pred             ccCCCcceeecCCCcEecCCCCccccccCcCC----CCCcc--cceeccC-----CceEEecCCCeeeCCC
Q psy8875         404 VDLPVGYMCECNEGYKLSSNRHTCIDIDECET----PGSCS--QICLNEK-----GGFKCECVAGYIKDPH  463 (734)
Q Consensus       404 ~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~----~~~C~--~~C~n~~-----g~~~C~C~~gy~~~~~  463 (734)
                      ..+.+.|+|.|.+||.|. +..+|+...+|..    .-+|.  .+|++..     ..|+|.|.+||.+...
T Consensus        14 iQMSNHfEC~Cnegfvl~-~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~   83 (197)
T PF06247_consen   14 IQMSNHFECKCNEGFVLK-NENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG   83 (197)
T ss_dssp             EEESSEEEEEESTTEEEE-ETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS
T ss_pred             EEccCceEEEcCCCcEEc-cccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC
Confidence            445688999999999998 7789998888854    24564  3787776     4799999999999754

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=84.88  E-value=3.9  Score=28.45  Aligned_cols=40  Identities=18%  Similarity=0.230  Sum_probs=28.0

Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875         644 VQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       644 ~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v  686 (734)
                      .+++||+++...+.|..++........-+   ....+|.+|++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i---~vg~~P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATI---PVGGYPFGVAV   41 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEE---ECCCCCceEEe
Confidence            57899999999999999987543322222   22467888875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0276|consensus

Probab=84.74  E-value=78  Score=36.04  Aligned_cols=125  Identities=6%  Similarity=-0.001  Sum_probs=76.1

Q ss_pred             cccceeee-eeccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         472 EGHASLLF-ARKHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       472 ~~~~~l~~-~~~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      .....++. +++..||.+..+..+. ..+-.....+..|+++|..- .+.+....-.|...+.+++...+..+.+--..+
T Consensus        65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyV  143 (794)
T KOG0276|consen   65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYV  143 (794)
T ss_pred             eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEE
Confidence            33334444 4567788888775543 33444566788999997433 333444455666666664444444444444455


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEE
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLAL  597 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iav  597 (734)
                      -.||+.|...+-|.+-+-.++|.+.++.......-+.+.....+-+-.
T Consensus       144 Mqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdy  191 (794)
T KOG0276|consen  144 MQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDY  191 (794)
T ss_pred             EEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEe
Confidence            679999999999998888888888887655544333333333444433

>KOG4441|consensus

Probab=84.13  E-value=69  Score=37.16  Aligned_cols=154  Identities=14%  Similarity=0.174  Sum_probs=92.3

Q ss_pred             ceeeeccCCcEEEEeCCC------CeEEEEeCCCCceEEEEcCCCCCce-eEEEeCCCCeEEEEecC----CCceEEEec
Q psy8875         551 GLAVDWIYSHIYWTDAHK------NTIELANFEGTMRKVLVRSYLDEPR-SLALNPIDGWMYWSDWG----QNAKIERAG  619 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~------~~I~~~~ldG~~~~~l~~~~l~~P~-~iavD~~~g~LYwtd~~----~~~~I~~~~  619 (734)
                      ++++  .++.||++-...      ..+++.+.....-..+  ..+..+| ++++-...|.||..--.    ....|++.+
T Consensus       327 ~~~~--~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~--a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YD  402 (571)
T KOG4441|consen  327 GVAV--LNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV--APMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYD  402 (571)
T ss_pred             cEEE--ECCEEEEEccccCCCcccceEEEecCCCCceecc--CCccCccccceeEEECCEEEEEeccccccccccEEEec
Confidence            4454  578999985543      4678888776664432  3444443 44455578999998621    224688888


Q ss_pred             cCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEE
Q psy8875         620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYW  693 (734)
Q Consensus       620 ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lyw  693 (734)
                      .....-..+.. ....-.+.++-..+++||.+-.      ....+++++.....=+.+..- .....-+++++.+++||+
T Consensus       403 p~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M-~~~R~~~g~a~~~~~iYv  480 (571)
T KOG4441|consen  403 PVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPM-NTRRSGFGVAVLNGKIYV  480 (571)
T ss_pred             CCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCc-ccccccceEEEECCEEEE
Confidence            77654443321 1112234445457999999954      336788888766554444321 222344678999999999


Q ss_pred             EeCCC-----CceEEEeccCCC
Q psy8875         694 SDWQQ-----KAIYKANKFTGD  710 (734)
Q Consensus       694 td~~~-----~~v~~~~~~~G~  710 (734)
                      .-...     .+|.+.++.+.+
T Consensus       481 vGG~~~~~~~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  481 VGGFDGTSALSSVERYDPETNQ  502 (571)
T ss_pred             ECCccCCCccceEEEEcCCCCc
Confidence            85432     235666665444

>KOG0303|consensus

Probab=83.74  E-value=53  Score=35.23  Aligned_cols=161  Identities=8%  Similarity=0.105  Sum_probs=88.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..++.--|+|++....+..+......|+.-+...|..  .+..........+.+. ..|.++.|-....+|++.+.....
T Consensus       130 H~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~hpd~i~S~sfn-~dGs~l~TtckDKkvRv~dpr~~~  206 (472)
T KOG0303|consen  130 HQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLDHPDMVYSMSFN-RDGSLLCTTCKDKKVRVIDPRRGT  206 (472)
T ss_pred             cceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecCCCCeEEEEEec-cCCceeeeecccceeEEEcCCCCc
Confidence            3445556788887777777777777787777764432  2211123344566666 346777787778889998875332


Q ss_pred             eE-EE-EcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCceEEEEEcCCCCceeEE---EecCCCeEEEEeC
Q psy8875         581 RK-VL-VRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHRNMVIVSDIKWPNGLT---LDLVQRRLYWVDA  653 (734)
Q Consensus       581 ~~-~l-~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~~~lv~~~l~~P~gla---vD~~~~~LYw~D~  653 (734)
                      .. .- ...+...++.|-+  .+|.|+-|-.+..  ..|..-+.+.- .+.+....+..-+|+-   .|+.++.||.+--
T Consensus       207 ~v~e~~~heG~k~~Raifl--~~g~i~tTGfsr~seRq~aLwdp~nl-~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  207 VVSEGVAHEGAKPARAIFL--ASGKIFTTGFSRMSERQIALWDPNNL-EEPIALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             EeeecccccCCCcceeEEe--ccCceeeeccccccccceeccCcccc-cCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence            21 11 1234455666666  4556555543221  11211111111 1112223344445554   3667788888877


Q ss_pred             CCCeEEEEecCCCc
Q psy8875         654 KLNEISSCDYNGGN  667 (734)
Q Consensus       654 ~~~~I~~~~~dG~~  667 (734)
                      +.+.|..+.+....
T Consensus       284 GD~~IRYyEit~d~  297 (472)
T KOG0303|consen  284 GDSSIRYFEITNEP  297 (472)
T ss_pred             CCcceEEEEecCCC
Confidence            77777777765443

>PRK10115 protease 2; Provisional

Probab=83.24  E-value=1.1e+02  Score=36.49  Aligned_cols=194  Identities=10%  Similarity=0.070  Sum_probs=93.4

Q ss_pred             eEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-----CCeEEEEe
Q psy8875         505 ATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-----KNTIELAN  575 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-----~~~I~~~~  575 (734)
                      ..++.+.+..+.|.++-...+    .|+.+++.+|......+. ...  .+++..+.++.||++-..     ...|++.+
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~-~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD-NVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc-Ccc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            345566666666666532222    467777765432111111 111  234443344567666332     25788888


Q ss_pred             CCCC--ceEEEEcCCCCCcee--EEEeCCCCeEEEEecC-CCceEEEecc---CCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         576 FEGT--MRKVLVRSYLDEPRS--LALNPIDGWMYWSDWG-QNAKIERAGM---DGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       576 ldG~--~~~~l~~~~l~~P~~--iavD~~~g~LYwtd~~-~~~~I~~~~l---dG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      +...  ..+.|+... ..+..  +.......+|++.-.. ..+.++....   ++.. +.++......-  ..+...++.
T Consensus       206 lgt~~~~d~lv~~e~-~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~  281 (686)
T PRK10115        206 IGTPASQDELVYEEK-DDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHE--YSLDHYQHR  281 (686)
T ss_pred             CCCChhHCeEEEeeC-CCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCE--EEEEeCCCE
Confidence            8665  333444322 22222  2222234445433322 2234554442   3332 22332222211  233345678


Q ss_pred             EEEEeC---CCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875         648 LYWVDA---KLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK  706 (734)
Q Consensus       648 LYw~D~---~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~  706 (734)
                      ||+...   .+.+|.++++... .-++++... .-....+++++.++|+++-..  ..+|+.++.
T Consensus       282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~-~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~  345 (686)
T PRK10115        282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPR-ENIMLEGFTLFTDWLVVEERQRGLTSLRQINR  345 (686)
T ss_pred             EEEEEcCCCCCceEEEecCCCcccCeEEECCC-CCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence            887753   4457888887743 334555421 122345778888988887543  344555554

>KOG0286|consensus

Probab=83.17  E-value=60  Score=33.49  Aligned_cols=136  Identities=11%  Similarity=0.043  Sum_probs=81.4

Q ss_pred             CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC
Q psy8875         523 SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG  602 (734)
Q Consensus       523 ~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g  602 (734)
                      +.....--++..|. ....+..-...+-+|+|-+.+.+.|++-.-.......++........+.+.-...+++.+.| .|
T Consensus       164 GD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G  241 (343)
T KOG0286|consen  164 GDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SG  241 (343)
T ss_pred             CCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CC
Confidence            33344444454333 23333334556677888877899999988777777777754444444556667788999987 57


Q ss_pred             eEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         603 WMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       603 ~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      .-|.|-. ..+.....++-......+.+.  .+.-.+++++. ..|||.++-.....+.+-+
T Consensus       242 ~afatGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWD  301 (343)
T KOG0286|consen  242 DAFATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWD  301 (343)
T ss_pred             CeeeecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEee
Confidence            7777763 234555555543322223322  23345778886 5667777755555566555

>KOG0281|consensus

Probab=83.11  E-value=8.4  Score=40.19  Aligned_cols=150  Identities=15%  Similarity=0.094  Sum_probs=93.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+..-+.|+   +++.++......|..-+.+.|....+++. --..+-+|.+   ++.+.+|-+....|.+.+|+...
T Consensus       236 HtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf---~ng~mvtcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  236 HTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRF---SNGYMVTCSKDRSIAVWDMASPT  308 (499)
T ss_pred             CCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEE---eCCEEEEecCCceeEEEeccCch
Confidence            34566778887   34777777777888888876665444443 2233445554   35667787888899999887643


Q ss_pred             ----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         581 ----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       581 ----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                          +++|+ +.....+.+.+|   .++.++..+ ...|.+-+++...-   +..--.+-.|||--...++|.++-+..+
T Consensus       309 ~it~rrVLv-GHrAaVNvVdfd---~kyIVsASg-DRTikvW~~st~ef---vRtl~gHkRGIAClQYr~rlvVSGSSDn  380 (499)
T KOG0281|consen  309 DITLRRVLV-GHRAAVNVVDFD---DKYIVSASG-DRTIKVWSTSTCEF---VRTLNGHKRGIACLQYRDRLVVSGSSDN  380 (499)
T ss_pred             HHHHHHHHh-hhhhheeeeccc---cceEEEecC-CceEEEEeccceee---ehhhhcccccceehhccCeEEEecCCCc
Confidence                22333 444444444444   234444433 46676666654322   2222345689998888999999988888


Q ss_pred             eEEEEecCC
Q psy8875         657 EISSCDYNG  665 (734)
Q Consensus       657 ~I~~~~~dG  665 (734)
                      .|...++.-
T Consensus       381 tIRlwdi~~  389 (499)
T KOG0281|consen  381 TIRLWDIEC  389 (499)
T ss_pred             eEEEEeccc
Confidence            888877653

>KOG2111|consensus

Probab=83.04  E-value=63  Score=33.68  Aligned_cols=145  Identities=11%  Similarity=0.052  Sum_probs=82.4

Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeE-EEeCCCCeEEEEecC-CCceEEEeccCCCce--EEEEEcCC
Q psy8875         558 YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSL-ALNPIDGWMYWSDWG-QNAKIERAGMDGSHR--NMVIVSDI  633 (734)
Q Consensus       558 ~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~i-avD~~~g~LYwtd~~-~~~~I~~~~ldG~~~--~~lv~~~l  633 (734)
                      ..+|.++-.  ++|++..+....+..-......+|+|+ ++.|..+..+.+=.| ..++|...++.-...  ..++....
T Consensus       104 r~riVvvl~--~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~  181 (346)
T KOG2111|consen  104 RDRIVVVLE--NKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD  181 (346)
T ss_pred             CCeEEEEec--CeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc
Confidence            344444443  677787776544444333566778886 456666666666544 347788887765544  24444333


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEe--cCCCceEEEEcCCCCCCCCeEEEEECCEEEEE-eCCCCceEEEec
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCD--YNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS-DWQQKAIYKANK  706 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~--~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt-d~~~~~v~~~~~  706 (734)
                      ..-.-++|. ..|.|.-+-+..+++.|+-  .+|+....+-.+. .-.+-+.|++..+..|.+ ...++.|..+..
T Consensus       182 s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  182 SDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             CceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            333456665 4666766666677665553  5566666655432 233456788855544443 344555555543

>KOG0308|consensus

Probab=83.03  E-value=22  Score=40.36  Aligned_cols=152  Identities=16%  Similarity=0.123  Sum_probs=90.7

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      .+.++|... ++.++++....+-|...+..... +...+.+--.+++.|-++..+..+. +-+..+.|.+.+|.-.....
T Consensus       173 siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~-kimkLrGHTdNVr~ll~~dDGt~~l-s~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  173 SIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCK-KIMKLRGHTDNVRVLLVNDDGTRLL-SASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             ceeeeecCC-cceEEEecCcccceEEecccccc-ceeeeeccccceEEEEEcCCCCeEe-ecCCCceEEeeeccccceee
Confidence            556777764 55677766555656666655333 2233333455677788875555554 44557899999887554322


Q ss_pred             --EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         584 --LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       584 --l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                        ++...  ..-++..+|.-.++|..+.  .+.|++.+|......+++-+.-+...-|.+....+-+ |+.+....|.+.
T Consensus       250 T~~vH~e--~VWaL~~~~sf~~vYsG~r--d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW  324 (735)
T KOG0308|consen  250 TYIVHKE--GVWALQSSPSFTHVYSGGR--DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRW  324 (735)
T ss_pred             eEEeccC--ceEEEeeCCCcceEEecCC--CCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceec
Confidence              22222  3567888888888898873  5789999997744444443333333445554344444 766666666665


Q ss_pred             ec
Q psy8875         662 DY  663 (734)
Q Consensus       662 ~~  663 (734)
                      ..
T Consensus       325 ~~  326 (735)
T KOG0308|consen  325 KL  326 (735)
T ss_pred             CC
Confidence            43

>KOG2106|consensus

Probab=83.00  E-value=82  Score=34.93  Aligned_cols=68  Identities=18%  Similarity=0.089  Sum_probs=41.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN  575 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~  575 (734)
                      ...+..|+-.  .+-||+- ...+.|..-++..+...++...  .....|||..+ ..++|.|-...+.+...+
T Consensus       329 ~G~iRtv~e~--~~di~vG-TtrN~iL~Gt~~~~f~~~v~gh--~delwgla~hp-s~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  329 FGPIRTVAEG--KGDILVG-TTRNFILQGTLENGFTLTVQGH--GDELWGLATHP-SKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             cCCeeEEecC--CCcEEEe-eccceEEEeeecCCceEEEEec--ccceeeEEcCC-ChhheeeccCcceEEEcc
Confidence            3444555433  3335554 4566788888875554444433  33678999985 577888877666666555

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.77  E-value=27  Score=36.10  Aligned_cols=82  Identities=13%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       568 ~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      ..+|++..+-|...+.    +.  -+-=||+.....|||--|-..+.+++-.-+|+ +++....+..+.+..-++...=+
T Consensus        19 ~~~iY~felvG~~P~S----GG--DTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~-~~IdF~NKYSHVH~yd~e~~~Vr   91 (339)
T PF09910_consen   19 SEKIYRFELVGPPPTS----GG--DTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGR-ATIDFRNKYSHVHEYDTENDSVR   91 (339)
T ss_pred             ceEEEEeeeccCCCCC----CC--ccceeeeeecceEEEeeeecCCceeeeccCCc-eEEEEeeccceEEEEEcCCCeEE
Confidence            4567776665554321    11  12346667889999999987788888777776 45555556555554444333336


Q ss_pred             EEEEeCCCC
Q psy8875         648 LYWVDAKLN  656 (734)
Q Consensus       648 LYw~D~~~~  656 (734)
                      |.|.++-.+
T Consensus        92 LLWkesih~  100 (339)
T PF09910_consen   92 LLWKESIHD  100 (339)
T ss_pred             EEEecccCC
Confidence            778775444

>KOG0274|consensus

Probab=81.84  E-value=1e+02  Score=35.33  Aligned_cols=206  Identities=14%  Similarity=0.081  Sum_probs=115.3

Q ss_pred             EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      +........++++.. .+.++++-....+++.-+...|.-..++. .   ....+......+.+..+-+....|.+.++.
T Consensus       245 l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-g---h~stv~~~~~~~~~~~sgs~D~tVkVW~v~  319 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQ-G---HTSSVRCLTIDPFLLVSGSRDNTVKVWDVT  319 (537)
T ss_pred             ccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEec-C---CCceEEEEEccCceEeeccCCceEEEEecc
Confidence            344556778888875 56677777777888888876554433332 1   222222222446666665667788898888


Q ss_pred             CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      ......++.+.....+.+.++  .++|+-.-....-+||.+. -++-.. .+.....+...|+++.. .++|=.. ....
T Consensus       320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~-~~~cl~-sl~gH~~~V~sl~~~~~-~~~~Sgs-~D~~  393 (537)
T KOG0274|consen  320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR-TGKCLK-SLSGHTGRVYSLIVDSE-NRLLSGS-LDTT  393 (537)
T ss_pred             CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh-hceeee-eecCCcceEEEEEecCc-ceEEeee-eccc
Confidence            555555554466677888886  5555555432222344443 121112 22334455677877633 5555443 3367


Q ss_pred             EEEEecCCC-ceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         658 ISSCDYNGG-NRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       658 I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      |...++.+. .....+..+..+  ..+|.+....|.+..+. +.|..-+..+++.++++..
T Consensus       394 IkvWdl~~~~~c~~tl~~h~~~--v~~l~~~~~~Lvs~~aD-~~Ik~WD~~~~~~~~~~~~  451 (537)
T KOG0274|consen  394 IKVWDLRTKRKCIHTLQGHTSL--VSSLLLRDNFLVSSSAD-GTIKLWDAEEGECLRTLEG  451 (537)
T ss_pred             eEeecCCchhhhhhhhcCCccc--ccccccccceeEecccc-ccEEEeecccCceeeeecc
Confidence            888888877 443333322111  23444455555444443 5566656667777776654

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=81.75  E-value=1.6  Score=29.03  Aligned_cols=24  Identities=33%  Similarity=0.631  Sum_probs=15.8

Q ss_pred             CCcCccccCCCcceeecCCCcEecC
Q psy8875         398 GCLHKCVDLPVGYMCECNEGYKLSS  422 (734)
Q Consensus       398 ~C~~~C~~~~~~~~C~C~~G~~l~~  422 (734)
                      .|.+.|..... ..|.|++||.|..
T Consensus         7 ~CpA~CDpn~~-~~C~CPeGyIlde   30 (34)
T PF09064_consen    7 ECPADCDPNSP-GQCFCPEGYILDE   30 (34)
T ss_pred             cCCCccCCCCC-CceeCCCceEecC
Confidence            34555654333 3799999998863

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>KOG0263|consensus

Probab=81.53  E-value=79  Score=36.76  Aligned_cols=175  Identities=11%  Similarity=0.074  Sum_probs=97.5

Q ss_pred             cceEEeecCCCceEEEecCCcce-EEEeeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSA-TAIDFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~-~~i~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..+|-=+++.....++..+-..| ..+.|.|.  -.|++.... +.-.....+ ......++...+....-+++.|.. +
T Consensus       473 ~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tArLWs~d-~~~PlRifaghlsDV~cv~FHPNs-~  548 (707)
T KOG0263|consen  473 SSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTARLWSTD-HNKPLRIFAGHLSDVDCVSFHPNS-N  548 (707)
T ss_pred             cceeeeecccceeEEEecCCCcceeeEEecCC--ceEEEecCCCceeeeeecc-cCCchhhhcccccccceEEECCcc-c
Confidence            34444445443333333333333 34556543  345554433 222222223 223333333456677778898654 4


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      .-.|.+...+++..+.......-++.+.-....+|++.|...+|  +..+..+.|...++.++.+...+.+.-.....|+
T Consensus       549 Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L--aSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls  626 (707)
T KOG0263|consen  549 YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL--ASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS  626 (707)
T ss_pred             ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE--eecccCCcEEEEEcCCCcchhhhhcccCceeEEE
Confidence            44455667778888775555555566667777899999855433  3323456777777766443322223344456788


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecC
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYN  664 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~d  664 (734)
                      +. ..+.|.++....+.|...++.
T Consensus       627 FS-~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  627 FS-RDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             Ee-cCCCEEEecCCCCeEEEEEch
Confidence            85 566777888887877777654

>KOG2096|consensus

Probab=81.32  E-value=73  Score=33.24  Aligned_cols=207  Identities=13%  Similarity=0.096  Sum_probs=96.4

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCc--eEEEEeCCCCC-----ccceeeeccCCcEEEEe-CCCCe
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSE--RTVVIEEDKTI-----ADGLAVDWIYSHIYWTD-AHKNT  570 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~--~~~~~~~~~~~-----p~glAvD~~~~~lY~td-~~~~~  570 (734)
                      ...|..|+|.+.-..+.++-....+|+.+.+..   |+.  ..+... .+..     ..-|.+--.++-.|+.. +....
T Consensus       132 ~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D-~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~  210 (420)
T KOG2096|consen  132 YDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHID-NLEFERKHQVDIINIGIAGNAKYIMSASLDTK  210 (420)
T ss_pred             CCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccccccc-ccccchhcccceEEEeecCCceEEEEecCCCc
Confidence            347777777665444333323445565554431   221  111111 1111     11122222234444443 34567


Q ss_pred             EEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE--eccCCCceEEE----EEcCCCCceeEEEecC
Q psy8875         571 IELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER--AGMDGSHRNMV----IVSDIKWPNGLTLDLV  644 (734)
Q Consensus       571 I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~--~~ldG~~~~~l----v~~~l~~P~glavD~~  644 (734)
                      |...++.|.....|-.. ...-..-||.|..++|-.+.....-++|-  ..-||+..++.    +.........+++...
T Consensus       211 i~lw~lkGq~L~~idtn-q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~  289 (420)
T KOG2096|consen  211 ICLWDLKGQLLQSIDTN-QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS  289 (420)
T ss_pred             EEEEecCCceeeeeccc-cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC
Confidence            88888888776665433 33445678888777676665433345543  34477654432    1122223455666655


Q ss_pred             CCeEEEEeCCCCeEEEEecC-----CCceEEEEcCC----CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875         645 QRRLYWVDAKLNEISSCDYN-----GGNRRLVLYSP----QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~d-----G~~~~~i~~~~----~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      ..++. +-++.+++...+.|     +.+.+++-..+    .....|..|++ -++.++-...++ .|..++..+|+..
T Consensus       290 S~r~v-tvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~  365 (420)
T KOG2096|consen  290 STRAV-TVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDY  365 (420)
T ss_pred             cceeE-EEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccc
Confidence            55543 33444444443332     33443332221    12345666666 344444444432 3344444445443

>KOG0277|consensus

Probab=81.28  E-value=65  Score=32.61  Aligned_cols=154  Identities=12%  Similarity=0.059  Sum_probs=82.6

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec--cCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW--IYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~--~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+|+|......+..+-.+.+.+...++...+....++.+  ..-+-.+|||  +.+.++.+.+..++|...+++-...
T Consensus        62 ~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   62 GLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--hhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            44566666555555555556666555553322222222221  1223455665  4567788777777777766654332


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCC-ceEEEeccCCCceEEEEEcCCCCceeEEEecC--CCeEEEEeCCCCeE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQN-AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV--QRRLYWVDAKLNEI  658 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~--~~~LYw~D~~~~~I  658 (734)
                      ..-..+...-....+..|....||-+-.+.. -+|+-....|+...+.+.    ....|..|..  +.+|..+-...+.|
T Consensus       140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah----~~Eil~cdw~ky~~~vl~Tg~vd~~v  215 (311)
T KOG0277|consen  140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH----NSEILCCDWSKYNHNVLATGGVDNLV  215 (311)
T ss_pred             eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec----cceeEeecccccCCcEEEecCCCceE
Confidence            2223344445567777788888887775532 366666666655442221    1234554433  45666665555666


Q ss_pred             EEEec
Q psy8875         659 SSCDY  663 (734)
Q Consensus       659 ~~~~~  663 (734)
                      +..++
T Consensus       216 r~wDi  220 (311)
T KOG0277|consen  216 RGWDI  220 (311)
T ss_pred             EEEeh
Confidence            65554

>KOG1407|consensus

Probab=81.16  E-value=67  Score=32.65  Aligned_cols=200  Identities=15%  Similarity=0.085  Sum_probs=97.4

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      ...-+.|++....+|.+-...+.|.+.+...+.....+.. ...+ .-|+--+.++.+-+.+. ...|..++..  ..++
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~-~~en-i~i~wsp~g~~~~~~~k-dD~it~id~r--~~~~  140 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIET-KGEN-INITWSPDGEYIAVGNK-DDRITFIDAR--TYKI  140 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeec-cCcc-eEEEEcCCCCEEEEecC-cccEEEEEec--ccce
Confidence            4455778888888888887788888877764433222211 1100 01111112222222221 1222222211  1112


Q ss_pred             EEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC-eEEEE
Q psy8875         584 LVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN-EISSC  661 (734)
Q Consensus       584 l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~-~I~~~  661 (734)
                      +.. .......-|+.. ..+.|||...| .+.|+....-.-....-+...-..-..|.+|+.++  |+|-.... .+..-
T Consensus       141 ~~~~~~~~e~ne~~w~-~~nd~Fflt~G-lG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr--yfA~GsADAlvSLW  216 (313)
T KOG1407|consen  141 VNEEQFKFEVNEISWN-NSNDLFFLTNG-LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR--YFATGSADALVSLW  216 (313)
T ss_pred             eehhcccceeeeeeec-CCCCEEEEecC-CceEEEEeccccccccccccCCcceEEEEECCCCc--eEeeccccceeecc
Confidence            211 122334566666 56778887756 36666655442222212221112224577775554  44543333 33333


Q ss_pred             ecCCCc-eEEEEcCCCCCCCCe-EEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         662 DYNGGN-RRLVLYSPQTLSHPF-SIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       662 ~~dG~~-~~~i~~~~~~~~~P~-gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +++--- .+.+    ..+.+|. .|.+ ..+++..+-....-|-.+..-+|..+..|.
T Consensus       217 D~~ELiC~R~i----sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~  270 (313)
T KOG1407|consen  217 DVDELICERCI----SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP  270 (313)
T ss_pred             ChhHhhhheee----ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence            333322 2222    3466775 5666 456666666666667777778888877765

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=80.82  E-value=1.1e+02  Score=34.81  Aligned_cols=14  Identities=21%  Similarity=0.067  Sum_probs=9.4

Q ss_pred             EEEecCCCeEEEEe
Q psy8875         639 LTLDLVQRRLYWVD  652 (734)
Q Consensus       639 lavD~~~~~LYw~D  652 (734)
                      .++|...++||+..
T Consensus       222 pa~d~~~g~V~vg~  235 (488)
T cd00216         222 PTYDPKTNLVYVGT  235 (488)
T ss_pred             eeEeCCCCEEEEEC
Confidence            56666677777764

The alignment model contains an 8-bladed beta-propeller.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.68  E-value=1.1e+02  Score=36.71  Aligned_cols=20  Identities=10%  Similarity=0.101  Sum_probs=14.4

Q ss_pred             CCceEEEeccCCCceEEEec
Q psy8875         698 QKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       698 ~~~v~~~~~~~G~~~~~l~~  717 (734)
                      +++|+.++..||+.+-..+.
T Consensus       413 ~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       413 SSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             cceEEEEeCCCCceEEEecc
Confidence            45677888888887766654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	734
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		1e-122
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		1e-122
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		1e-88
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		9e-85
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		5e-77
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		7e-67
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		2e-60
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-60
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		6e-60
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		7e-60
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		3e-59
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		2e-52
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		4e-52
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		4e-52
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		2e-31
2w2m_E	107	Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length =		8e-17
3bps_E	83	Pcsk9:egf-a Complex Length = 83		2e-16
2w2n_E	107	Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr		3e-16
1hz8_A	82	Solution Structure And Backbone Dynamics Of A Conca		5e-16
3gcw_E	83	Pcsk9:egfa(H306y) Length = 83		9e-16
1hj7_A	80	Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Ep		9e-16
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		3e-12
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		6e-04
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		2e-11
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		1e-04
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		8e-10
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		4e-06
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		2e-08
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		2e-07
1xfe_A	83	Solution Structure Of The La7-Egfa Pair From The Ld		9e-07
2xrc_A	565	Human Complement Factor I Length = 565		3e-06
1d2l_A	45	Nmr Solution Structure Of Complement-Like Repeat Cr		1e-05
1z6c_A	87	Solution Structure Of An Egf Pair (Egf34) From Vita		3e-05
1j8e_A	44	Crystal Structure Of Ligand-Binding Repeat Cr7 From		3e-05
1j8e_A	44	Crystal Structure Of Ligand-Binding Repeat Cr7 From		4e-04
1ldr_A	43	Second Repeat Of The Ldl Receptor Ligand-Binding Do		4e-04
2kri_B	40	Structure Of A Complex Between Domain V Of Beta2- G		8e-04

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/668 (37%), Positives = 358/668 (53%), Gaps = 69/668 (10%)
Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CI   WVCDG  +C DG DE +  C    C   +F+C      C+P  W CD 
Sbjct: 29  FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 88
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC +GSDE+ C  +TC   EFRC + +CI   + CD + DC D SDE       V  C
Sbjct: 89  QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVLTC 145
Query: 178 AAVNGHC-SHLCLPAPQINAHSPKISCACPEGLKLLPDL---LMCAEAGSKPCRNSTMFR 233
              +  C S  C+P      + P     C +G    P     L   +  S PC ++  F 
Sbjct: 146 GPASFQCNSSTCIPQLWACDNDPD----CEDGSDEWPQRCRGLYVFQGDSSPC-SAFEFH 200
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLXXXXXXXXX 292
           C  G CI S+W CDG  DC D  DE+ C   TCR DEF C++GNCI              
Sbjct: 201 CLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH---------GSRQ 251
Query: 293 XXXXXXCQPVKCTAGQFTCQNLTACI-PDKWVC-DGDTVEKDSTCPNATPMNSSVRIEGA 350
                 C+ +    G   C N+T C  P+K+ C  G+ +  D                  
Sbjct: 252 CDREYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGECITLDK----------------- 291
Query: 351 VAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGY 410
                             VC+   DC    DE   +CG +EC  +NGGC H C DL +GY
Sbjct: 292 ------------------VCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGY 333
Query: 411 MCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
            C C +G++L + R  C DIDEC+ P +CSQ+C+N +GG+KC+C  G+  DPH    CKA
Sbjct: 334 ECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKA 391
Query: 471 AEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKA 530
               A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I   
Sbjct: 392 VGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICST 451
Query: 531 PIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS 587
            +D     S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R 
Sbjct: 452 QLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE 511
Query: 588 YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR 647
              +PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  R
Sbjct: 512 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR 571
Query: 648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF 707
           LYWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ 
Sbjct: 572 LYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRL 631
Query: 708 TGDNLTAI 715
           TG ++  +
Sbjct: 632 TGSDVNLL 639

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/668 (37%), Positives = 355/668 (53%), Gaps = 67/668 (10%)
Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CI   WVCDG  +C DG DE +  C    C   +F+C      C+P  W CD 
Sbjct: 11  FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 70
Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC +GSDE+ C  +TC   EFRC + +CI   + CD + DC D SDE       V  C
Sbjct: 71  QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVLTC 127
Query: 178 AAVNGHC-SHLCLPAPQINAHSPKISCACPEGLKLLPDL---LMCAEAGSKPCRNSTMFR 233
              +  C S  C+P      + P     C +G    P     L   +  S PC ++  F 
Sbjct: 128 GPASFQCNSSTCIPQLWACDNDPD----CEDGSDEWPQRCRGLYVFQGDSSPC-SAFEFH 182
Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLXXXXXXXXX 292
           C  G CI S+W CDG  DC D  DE+ C   TCR DEF C++GNCI              
Sbjct: 183 CLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIH---------GSRQ 233
Query: 293 XXXXXXCQPVKCTAGQFTCQNLTACI-PDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
                 C+ +    G   C N+T C  P+K+ C                           
Sbjct: 234 CDREYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGEC---------------------- 268
Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYM 411
                       I    VC+   DC    DE   +CG +EC  +NGGC H C DL +GY 
Sbjct: 269 ------------ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYE 316
Query: 412 CECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA 471
           C C +G++L + R  C DIDEC+ P +CSQ+C+N +GG+KC+C  G+  DPH    CKA 
Sbjct: 317 CLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAV 374
Query: 472 EGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
              A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I    
Sbjct: 375 GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 434
Query: 532 IDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY 588
           +D     S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R  
Sbjct: 435 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQ 494
Query: 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648
             +PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  RL
Sbjct: 495 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRL 554
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708
           YWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ T
Sbjct: 555 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614
Query: 709 GDNLTAIT 716
           G ++  + 
Sbjct: 615 GSDVNLLA 622

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score =  324 bits (830), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/355 (42%), Positives = 229/355 (64%), Gaps = 5/355 (1%)
Query: 364 IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
           I    VC+   DC    DE   +CG +EC  +NGGC H C DL +GY C C +G++L + 
Sbjct: 15  ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 74
Query: 424 RHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKH 483
           R  C DIDEC+ P +CSQ+C+N +GG+KC+C  G+  DPH    CKA    A L F  +H
Sbjct: 75  RR-CEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH-TKACKAVGSIAYLFFTNRH 132
Query: 484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTV 540
           ++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I    +D     S    
Sbjct: 133 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 192
Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
           VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R    +PR++ ++P+
Sbjct: 193 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 252
Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660
            G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  RLYWVD+KL+ ISS
Sbjct: 253 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 312
Query: 661 CDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
            D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ TG ++  +
Sbjct: 313 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLL 367

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score =  311 bits (797), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 143/329 (43%), Positives = 218/329 (66%), Gaps = 5/329 (1%)
Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
           +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +GG
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEGG 59
Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
           +KC+C  G+  DPH    CKA    A L F  +H++RK++LD  E T+++ + ++  A+D
Sbjct: 60  YKCQCEEGFQLDPH-TKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118
Query: 510 FVFRTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
               +  I+WSD+S++ I    +D     S    VI  D    DGLAVDWI+S+IYWTD+
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178
Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
              T+ +A+ +G  RK L R    +PR++ ++P+ G+MYW+DWG  AKI++ G++G    
Sbjct: 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238
Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
            ++  +I+WPNG+TLDL+  RLYWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ 
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298
Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
           FED ++W+D   +AI+ AN+ TG ++  +
Sbjct: 299 FEDKVFWTDIINEAIFSANRLTGSDVNLL 327

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  285 bits (730), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 142/339 (41%), Positives = 211/339 (62%), Gaps = 6/339 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G + C  +NGGC  KC  +     C C+ GY+L+ +  TC D++EC   G CSQ C N +
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61
Query: 448 GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATA 507
           G F+C C AGY   P   + CKA      LLFA + DIR++     E T ++N+ ++A A
Sbjct: 62  GAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120
Query: 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH 567
           +DF  R  ++FWSD++  +I +A ++ GS    V+        GLAVDW++  +YWTD+ 
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG 179
Query: 568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627
            + IE+AN +G  RKVL+   L++PR++AL+P++G +YW+DWG   +IE + MDGS R +
Sbjct: 180 TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239
Query: 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
           +  + + WPNGLT+D   RR+YWVDAK + I   + +G +R+ V+   Q L HPF+I+ F
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI--SQGLPHPFAITVF 297
Query: 688 EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726
           ED LYW+DW  K+I  ANKFTG N   I   ++ H P++
Sbjct: 298 EDSLYWTDWHTKSINSANKFTGKNQEIIR--NKLHFPMD 334

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  251 bits (642), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 126/297 (42%), Positives = 188/297 (63%), Gaps = 6/297 (2%)
Query: 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKIS 489
           ++EC   G CSQ C N +G F+C C AGY   P   + CKA      LLFA + DIR++ 
Sbjct: 1   VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVL 59
Query: 490 LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549
               E T ++N+ ++A A+DF  R  ++FWSD++  +I +A ++ GS    V+       
Sbjct: 60  PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP 118
Query: 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609
            GLAVDW++  +YWTD+  + IE+AN +G  RKVL+   L++PR++AL+P++G +YW+DW
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178
Query: 610 GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669
           G   +IE + MDGS R ++  + + WPNGLT+D   RR+YWVDAK + I   + +G +R+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238
Query: 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN 726
            V+   Q L HPF+I+ FED LYW+DW  K+I  ANKFTG N   I   ++ H P++
Sbjct: 239 AVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR--NKLHFPMD 291

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  230 bits (586), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           LL+A + D+R +   +     T +V   + A A+DFVF  G+I+WSD+SE+ I +   ++
Sbjct: 7   LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
                 V+       DGLA DW+   +YWTD+  N IE++N +G++RKVL    LD+PR+
Sbjct: 67  TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
           +AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLTLD  +++LYW DAK
Sbjct: 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
           LN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +I   NK+TG+    
Sbjct: 187 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 240
Query: 715 ITGVHQTHEPLNSP 728
             G+ + H  + SP
Sbjct: 241 --GLREIHSDIFSP 252

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  230 bits (586), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           LL+A + D+R +   +     T +V   + A A+DFVF  G+I+WSD+SE+ I +   ++
Sbjct: 4   LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 63
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
                 V+       DGLA DW+   +YWTD+  N IE++N +G++RKVL    LD+PR+
Sbjct: 64  TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
           +AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLTLD  +++LYW DAK
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
           LN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +I   NK+TG+    
Sbjct: 184 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 237
Query: 715 ITGVHQTHEPLNSP 728
             G+ + H  + SP
Sbjct: 238 --GLREIHSDIFSP 249

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  229 bits (583), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           LL+A + D+R +   +     T +V   + A A+DFVF  G+I+WSD+SE+ I +   ++
Sbjct: 4   LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 63
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
                 V+       DGLA DW+   +YWTD+  N IE++N +G++RKVL    LD+PR+
Sbjct: 64  TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
           +AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLTLD  +++LYW DAK
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
           LN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +I   NK+TG+    
Sbjct: 184 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 237
Query: 715 ITGVHQTHEPLNSP 728
             G+ + H  + SP
Sbjct: 238 --GLREIHSDIFSP 249

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  228 bits (582), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/254 (43%), Positives = 163/254 (64%), Gaps = 10/254 (3%)
Query: 477 LLFARKHDIRKISLDH--HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           LL+A + D+R +   +     T +V   + A A+DFVF  G+I+WSD+SE+ I +   ++
Sbjct: 12  LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 71
Query: 535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS 594
                 V+       DGLA DW+   +YWTD+  N IE++N +G++RKVL    LD+PR+
Sbjct: 72  TESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131
Query: 595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK 654
           +AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLTLD  +++LYW DAK
Sbjct: 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191
Query: 655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTA 714
           LN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +I   NK+TG+    
Sbjct: 192 LNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE---- 245
Query: 715 ITGVHQTHEPLNSP 728
             G+ + H  + SP
Sbjct: 246 --GLREIHSDIFSP 257

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 102/244 (41%), Positives = 162/244 (66%), Gaps = 3/244 (1%)
Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I    +D 
Sbjct: 2   AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 535 G---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
               S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R    +
Sbjct: 62  AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
           PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  RLYWV
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
           D+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ TG +
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241
Query: 712 LTAI 715
           +  +
Sbjct: 242 VNLL 245

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score =  204 bits (518), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/249 (41%), Positives = 157/249 (63%), Gaps = 7/249 (2%)
Query: 471 AEGHASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIY 528
           A+  A LLF+R+ DIR+ISL+  ++ +   +   K A+A+DF      I+W+DIS K I 
Sbjct: 1   ADPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTIS 60
Query: 529 KAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY 588
           +A ++ GS    V+E      +G+AVDW+  ++YW D   N IE++  +G  R+VLV   
Sbjct: 61  RAFMN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKD 119
Query: 589 LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRL 648
           LD PR+LAL+P +G+MYW++WG   KI+RA MDGS R   +V ++   NGLT+D  +RRL
Sbjct: 120 LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRL 178
Query: 649 YWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT 708
           YW D   N I S +  G NR ++      L HPF ++ ++D++YW+DW +++I +ANK +
Sbjct: 179 YWTDLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTS 235
Query: 709 GDNLTAITG 717
           G N T I G
Sbjct: 236 GQNRTIIQG 244

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 155/246 (63%), Gaps = 7/246 (2%)
Query: 474 HASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
            A LLF+R+ DIR+ISL+  ++ +   +   K A+A+DF      I+W+DIS K I +A 
Sbjct: 6   EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 532 IDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
           ++ GS    V+E      +G+AVDW+  ++YW D   N IE++  +G  R+VLV   LD 
Sbjct: 66  MN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 124
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
           PR+LAL+P +G+MYW++WG   KI+RA MDGS R   +V ++   NGLT+D  +RRLYW 
Sbjct: 125 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWT 183
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
           D   N I S +  G NR ++      L HPF ++ ++D++YW+DW +++I +ANK +G N
Sbjct: 184 DLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240
Query: 712 LTAITG 717
            T I G
Sbjct: 241 RTIIQG 246

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score =  202 bits (515), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 155/246 (63%), Gaps = 7/246 (2%)
Query: 474 HASLLFARKHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAP 531
            A LLF+R+ DIR+ISL+  ++ +   +   K A+A+DF      I+W+DIS K I +A 
Sbjct: 11  EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 70
Query: 532 IDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
           ++ GS    V+E      +G+AVDW+  ++YW D   N IE++  +G  R+VLV   LD 
Sbjct: 71  MN-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDS 129
Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
           PR+LAL+P +G+MYW++WG   KI+RA MDGS R   +V ++   NGLT+D  +RRLYW 
Sbjct: 130 PRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLVPNVGRANGLTIDYAKRRLYWT 188
Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
           D   N I S +  G NR ++      L HPF ++ ++D++YW+DW +++I +ANK +G N
Sbjct: 189 DLDTNLIESSNMLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 245
Query: 712 LTAITG 717
            T I G
Sbjct: 246 RTIIQG 251

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 131/232 (56%), Gaps = 11/232 (4%)
Query: 477 LLFARKHDIRKISLDHHEMT-----AIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKA 530
           LLFA+   I ++ L+ + M      A ++   K    + F     +++W+DISE  I +A
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
            +  G E T +I +D    +G+A+D +   I+WTD+  + IE+A  +GT R+VL  + L 
Sbjct: 64  SL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 591 EPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649
            PR +  +P+ G +YW+DW + N KIE + MDG++R ++   ++  PNGLT D    +L 
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182
Query: 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAI 701
           WVDA  +     +     RR VL   + L +PF+++++   LY++DW+  ++
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDWKTNSV 231

>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +
Sbjct: 28  GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 86
Query: 448 GGFKCECVAGYIKDPH 463
           GG+KC+C  G+  DPH
Sbjct: 87  GGYKCQCEEGFQLDPH 102

>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +
Sbjct: 4   GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 62
Query: 448 GGFKCECVAGYIKDPH 463
           GG+KC+C  G+  DPH
Sbjct: 63  GGYKCQCEEGFQLDPH 78

>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G +EC  +NGGC + C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +
Sbjct: 28  GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 86
Query: 448 GGFKCECVAGYIKDPH 463
           GG+KC+C  G+  DPH
Sbjct: 87  GGYKCQCEEGFQLDPH 102

>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
            +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +G
Sbjct: 2   TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEG 60
Query: 449 GFKCECVAGYIKDPHHPTQCKAA 471
           G+KC+C  G+  DPH    CKA 
Sbjct: 61  GYKCQCEEGFQLDPHTKA-CKAV 82

>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y) Length = 83

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G +EC  +NGGC + C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +
Sbjct: 4   GTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLE 62
Query: 448 GGFKCECVAGYIKDPH 463
           GG+KC+C  G+  DPH
Sbjct: 63  GGYKCQCEEGFQLDPH 78

>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal Growth Factor-Like Domains, 20 Structures Length = 80

Iteration: 1
 Score = 82.4 bits (202), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
            +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +G
Sbjct: 2   TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDECQDPDTCSQLCVNLEG 60
Query: 449 GFKCECVAGYIKDPH 463
           G+KC+C  G+  DPH
Sbjct: 61  GYKCQCEEGFQLDPH 75

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Query: 92  RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNH 151
           + C Q EF C    G+C+   ++CD + DC DGSDE SC   TC  + F+C ++ CIP  
Sbjct: 1   KTCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 58
Query: 152 WQCDGEFDCSDKSDEDPEMCNG 173
           W CD + DC D SDE P+ C G
Sbjct: 59  WACDNDPDCEDGSDEWPQRCRG 80

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE-TCRSDEFTCANGNCIQRIW 282
           FRC  G CI   +VCD   DC DG DE  C   TC    F C +  CI ++W
Sbjct: 8   FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLW 59

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 6/77 (7%)
Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE--KSCKNRTCQASEFRCGN--NRCIP 149
           C + EF C+   G+C+   W+CD + +C DGSDE  ++C + TC++ +F CG   NRCIP
Sbjct: 8   CERNEFQCQ--DGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIP 65
Query: 150 NHWQCDGEFDCSDKSDE 166
             W+CDG+ DC + SDE
Sbjct: 66  QFWRCDGQVDCDNGSDE 82

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 47/129 (36%), Gaps = 53/129 (41%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQI 194
           C+ +EF+C + +CI   W CDG  +C D SDE  E C                       
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------------------- 44
Query: 195 NAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGM--CIPSTWVCDGQNDC 252
                 +S  C  G                       F C G +  CIP  W CDGQ DC
Sbjct: 45  ------LSVTCKSG----------------------DFSCGGRVNRCIPQFWRCDGQVDC 76
Query: 253 PDGVDEKKC 261
            +G DE+ C
Sbjct: 77  DNGSDEQGC 85

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 90  QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK-SCKNRTC-QASEFRCGNNRC 147
             R C   +F+C S  G C+P++W CD + DC D SDE  SC   TC   ++F C N RC
Sbjct: 1   SARTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRC 58
Query: 148 IPNHWQCDGEFDCSDKSDE 166
           I  +W+CD + DC D SDE
Sbjct: 59  ININWRCDNDNDCGDNSDE 77

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 44/129 (34%), Gaps = 51/129 (39%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
           RTC  ++F C + RCIP  W CD + DC D+SDE                          
Sbjct: 3   RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE-------------------------- 36
Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
                    SCA P    L                  T F C  G CI   W CD  NDC
Sbjct: 37  -------SASCAYPTCFPL------------------TQFTCNNGRCININWRCDNDNDC 71
Query: 253 PDGVDEKKC 261
            D  DE  C
Sbjct: 72  GDNSDEAGC 80

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCQ--------KRICGQEEFTCRSSPGECV 109
           F+C    CIP  W CD   DC DG DE  ++C+           C   EF C S  GEC+
Sbjct: 12  FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS--GECI 69
Query: 110 PLTWMCDDNPDCSDGSDEKSCKNRT 134
             +W CD  PDC D SDE++C   T
Sbjct: 70  HSSWRCDGGPDCKDKSDEENCAVAT 94

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 50/128 (39%), Gaps = 43/128 (33%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQ 193
           TC  + F+C ++ CIP  W CD + DC D SDE P+ C G                    
Sbjct: 6   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG-------------------- 45
Query: 194 INAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCP 253
                                 L   +  S PC ++  F C  G CI S+W CDG  DC 
Sbjct: 46  ----------------------LYVFQGDSSPC-SAFEFHCLSGECIHSSWRCDGGPDCK 82
Query: 254 DGVDEKKC 261
           D  DE+ C
Sbjct: 83  DKSDEENC 90

>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl Receptor Length = 83

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 35/62 (56%)
Query: 364 IVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSN 423
           I    VC+   DC    DE   +CG +EC  +NGGC H C DL +GY C C +G++L + 
Sbjct: 20  ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ 79
Query: 424 RH 425
           R 
Sbjct: 80  RR 81

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 106 GECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSD 165
           G+ +     CD   DC D SDE  CK   CQ   F C +  CIP+ +QC+GE DC   + 
Sbjct: 214 GKYISQMKACDGINDCGDQSDELCCK--ACQGKGFHCKSGVCIPSQYQCNGEVDCI--TG 269
Query: 166 EDPEMCNGVNHCAAVNGHCSHLCLPAP--QINAHSPKISCACPEGLKLLPDLLMC---AE 220
           ED   C G    A          + A   +I +  PK+SC     + +    ++    A+
Sbjct: 270 EDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPKLSCGVKNRMHIRRKRIVGGKRAQ 329
Query: 221 AGSKP----CRNSTMFRCTGGMCIPSTWV 245
            G  P     ++++   C GG+ I   W+
Sbjct: 330 LGDLPWQVAIKDASGITC-GGIYIGGCWI 357

>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From The Low Density Lipoprotein Receptor-Related Protein (Lrp) . Evidence For Specific Binding To The Receptor Binding Domain Of Human Alpha-2 Macroglobulin Length = 45

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
           CQ  EF C N+RCI   W+CDG+ DC D SDE P +C+
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K- Dependent Protein S Length = 87

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 389 VDECAKDNGGC-LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           VDEC+     C    C ++P  + CEC EGY+ +    +C DIDEC +   C+Q+C+N  
Sbjct: 3   VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC-SENMCAQLCVNYP 61
Query: 448 GGFKCEC 454
           GG+ C C
Sbjct: 62  GGYTCYC 68

>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp Length = 44

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
            +C +++F+C + RCIP HW CDG+ DC D SDE    C
Sbjct: 3   HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp Length = 44

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/37 (56%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE 258
           GS  C +ST F+C  G CIP  W CDG NDC D  DE
Sbjct: 1   GSHSC-SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36

>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain Length = 43

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 134 TCQASEFRCGN--NRCIPNHWQCDGEFDCSDKSDE 166
           TC++ +F CG   NRCIP  W+CDG+ DC + SDE
Sbjct: 6   TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40

>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2- Glycoprotein I And The Fourth Ligand-Binding Module From Ldlr Determined With Haddock Length = 40

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
           TC  + F+C ++ CIP  W CD + DC D SDE P+ C G
Sbjct: 1   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRG 40

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	734
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-163
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	7e-33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-21
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-10
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-153
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	8e-34
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-08
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-107
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-19
3v65_B	386	Low-density lipoprotein receptor-related protein;	5e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	6e-04
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-100
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	3e-17
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	7e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-98
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	7e-04
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	4e-86
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-10
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	2e-04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-82
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	2e-05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-04
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-80
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-29
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	7e-07
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	1e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	7e-78
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-34
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-07
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-06
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-74
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-73
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	4e-05
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-04
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	1e-44
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	1e-08
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	8e-05
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	5e-30
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-26
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-25
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-23
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	7e-27
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-11
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	6e-06
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-26
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-25
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	9e-24
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-21
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-20
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-23
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-23
2xrc_A	565	Human complement factor I; immune system, hydrolas	2e-15
2xrc_A	565	Human complement factor I; immune system, hydrolas	3e-15
2xrc_A	565	Human complement factor I; immune system, hydrolas	5e-08
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	8e-22
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	6e-07
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	4e-04
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	1e-20
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	1e-11
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	6e-04
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-18
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	2e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-17
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-16
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-13
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-05
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-17
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	4e-08
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	5e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	8e-17
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	4e-12
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	8e-12
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	5e-09
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	1e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	2e-04
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	2e-16
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	3e-14
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	5e-13
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-12
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-10
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	4e-05
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	8e-16
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	1e-13
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	6e-13
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	2e-09
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	5e-09
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	3e-04
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	8e-14
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	5e-13
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	6e-10
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	4e-09
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-08
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	7e-04
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	2e-13
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	1e-12
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	1e-09
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	2e-09
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	3e-08
3a7q_B	44	Low-density lipoprotein receptor-related protein;	3e-13
3a7q_B	44	Low-density lipoprotein receptor-related protein;	9e-13
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-09
3a7q_B	44	Low-density lipoprotein receptor-related protein;	3e-09
3a7q_B	44	Low-density lipoprotein receptor-related protein;	6e-09
3a7q_B	44	Low-density lipoprotein receptor-related protein;	3e-04
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	5e-13
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	4e-08
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	8e-13
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-11
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	4e-10
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	4e-10
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-09
2bou_A	143	EGF-like module containing mucin-like hormone rece	3e-12
2bou_A	143	EGF-like module containing mucin-like hormone rece	4e-08
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	3e-12
1cr8_A	42	Protein (LOW density lipoprotein receptor related	1e-11
1cr8_A	42	Protein (LOW density lipoprotein receptor related	9e-11
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-10
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-08
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-08
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-04
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	2e-11
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	3e-11
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	5e-09
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	6e-08
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	2e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	4e-06
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	3e-11
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	2e-04
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	4e-11
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-10
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	1e-09
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	7e-08
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	7e-08
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	6e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	5e-11
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	1e-10
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	4e-06
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	3e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	1e-10
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	3e-09
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	2e-08
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	4e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	4e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	6e-10
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-09
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	3e-09
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	7e-10
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-08
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	1e-09
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	2e-09
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	5e-09
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	5e-08
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	2e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-09
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	5e-09
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	4e-08
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	8e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	1e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	1e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	6e-05
2wph_E	59	Coagulation factor IXA light chain; serine proteas	8e-09
2wph_E	59	Coagulation factor IXA light chain; serine proteas	2e-05
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	8e-09
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	5e-05
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	6e-08
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	7e-05
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-08
2vh0_B	134	Activated factor XA light chain; serine protease,	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-07
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	2e-07
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-07
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	1e-07
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	1e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-07
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	5e-07
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	3e-06
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-05
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-06
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	3e-06
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	2e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	4e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	3e-04
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	7e-06
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	8e-04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	3e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	7e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	4e-04
1nzi_A	159	Complement C1S component; calcium, innate immunity	1e-04
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-04
1szb_A	170	Mannose binding lectin-associated serine protease-	4e-04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	6e-04
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	7e-04
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	8e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  489 bits (1260), Expect = e-163
 Identities = 239/680 (35%), Positives = 340/680 (50%), Gaps = 89/680 (13%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDD 117
           F+C  G CI   WVCDG  +C DG DE +  C    C   +F+C      C+P  W CD 
Sbjct: 29  FQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDG 88

Query: 118 NPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHC 177
             DC +GSDE+ C  +TC   EFRC + +CI   + CD + DC D SDE           
Sbjct: 89  QVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE----------- 137

Query: 178 AAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGG 237
                                     +CP                         F+C   
Sbjct: 138 -------------------------ASCPV-----------------LTCGPASFQCNSS 155

Query: 238 MCIPSTWVCDGQNDCPDGVDEKKCH-----------ETCRSDEFTCANGNCIQRIWLCDG 286
            CIP  W CD   DC DG DE                 C + EF C +G CI   W CDG
Sbjct: 156 TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG 215

Query: 287 DDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTV------EKDSTCPNATP 340
             DCKD SDE++C    C   +F C +   CI     CD +        E          
Sbjct: 216 GPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCE 274

Query: 341 MNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCL 400
             +  +                 I    VC+   DC    DE   +CG +EC  +NGGC 
Sbjct: 275 GPNKFKCHSGEC-----------ITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCS 323

Query: 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIK 460
           H C DL +GY C C +G++L +    C DIDEC+ P +CSQ+C+N +GG+KC+C  G+  
Sbjct: 324 HVCNDLKIGYECLCPDGFQLVAQ-RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQL 382

Query: 461 DPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWS 520
           DPH      A    A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WS
Sbjct: 383 DPHTKACK-AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWS 441

Query: 521 DISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE 577
           D+S++ I    +D     S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +
Sbjct: 442 DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501

Query: 578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPN 637
           G  RK L R    +PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPN
Sbjct: 502 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 561

Query: 638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ 697
           G+TLDL+  RLYWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D  
Sbjct: 562 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDII 621

Query: 698 QKAIYKANKFTGDNLTAITG 717
            +AI+ AN+ TG ++  +  
Sbjct: 622 NEAIFSANRLTGSDVNLLAE 641

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  134 bits (339), Expect = 7e-33
 Identities = 67/301 (22%), Positives = 98/301 (32%), Gaps = 42/301 (13%)

Query: 43  TSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
               V+       ++  F C  G CI S+W CDG  DC D  DE+ C    C  +EF C 
Sbjct: 182 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS 241

Query: 103 SSPGECVPLTWMCDDNPDCSDGSDEKSCKNRT--CQASEFRCGNNRCIPNHWQCDGEFDC 160
              G C+  +  CD   DC D SDE  C N T     ++F+C +  CI     C+   DC
Sbjct: 242 D--GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 299

Query: 161 SDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
            D SDE  + C   N C   NG CSH+C                                
Sbjct: 300 RDWSDEPIKECG-TNECLDNNGGCSHVCNDLKI--------------------------- 331

Query: 221 AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE-KKCHETCRSDEFTCANGNCIQ 279
                        C  G  + +   C+  ++C D     + C       +  C  G  + 
Sbjct: 332 --------GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 383

Query: 280 RI-WLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338
                C               +  K T  +    +L   + +    D +         + 
Sbjct: 384 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 443

Query: 339 T 339
           +
Sbjct: 444 S 444

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 98.8 bits (245), Expect = 2e-21
 Identities = 54/215 (25%), Positives = 71/215 (33%), Gaps = 30/215 (13%)

Query: 244 WVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEK--SCQP 301
           W                  + C  +EF C +G CI   W+CDG  +C+DGSDE   +C  
Sbjct: 3   WKLRWTVALLLAAAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLS 62

Query: 302 VKCTAGQFTCQNLT-ACIPDKWVCDGDTVEKD----STCPNATPMNSSVRIEGAVAFIPP 356
           V C +G F+C      CIP  W CDG     +      CP  T      R          
Sbjct: 63  VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGK----- 117

Query: 357 GFAMAMKIVRTAVCDKHPDCPLMQDE---DPTKCGVDECAKDNGGCLHK---------CV 404
                  I R  VCD   DC    DE       CG      ++  C+ +         C 
Sbjct: 118 ------CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCE 171

Query: 405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
           D    +   C   Y    +   C   +     G C
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGEC 206

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 62.2 bits (150), Expect = 4e-10
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 5/95 (5%)

Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNS 229
           GVN C      NG C +LCLPAPQIN HSPK +CACP+G+ L  D+  C          +
Sbjct: 660 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT--EAEAAVA 717

Query: 230 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHET 264
           T    T  + + ST V           D  +    
Sbjct: 718 TQETSTVRLKVSSTAVRTQHTTTRPVPDTSRLPGA 752

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  461 bits (1186), Expect = e-153
 Identities = 247/678 (36%), Positives = 349/678 (51%), Gaps = 102/678 (15%)

Query: 48  YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSP 105
                    S  F C G    CIP  W CDGQ DC +G DE+ C  + C Q+EF C    
Sbjct: 40  ETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD-- 97

Query: 106 GECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSD 165
           G+C+   ++CD + DC DGSDE SC   TC  + F+C ++ CIP  W CD + DC D SD
Sbjct: 98  GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 157

Query: 166 EDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKP 225
           E P+ C G+      +  CS                                        
Sbjct: 158 EWPQRCRGLYVFQGDSSPCS---------------------------------------- 177

Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCANGNCIQRIWLC 284
              +  F C  G CI S+W CDG  DC D  DE+ C   TCR DEF C++GNCI     C
Sbjct: 178 ---AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC 234

Query: 285 DGDDDCKDGSDEKSCQPVK--CTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN 342
           D + DCKD SDE  C  V       +F C +   CI    VC+                 
Sbjct: 235 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNM---------------- 277

Query: 343 SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHK 402
                                           DC    DE   +CG +EC  +NGGC H 
Sbjct: 278 ------------------------------ARDCRDWSDEPIKECGTNECLDNNGGCSHV 307

Query: 403 CVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDP 462
           C DL +GY C C +G++L   +  C DIDEC+ P +CSQ+C+N +GG+KC+C  G+  DP
Sbjct: 308 CNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDP 366

Query: 463 HHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI 522
           H      A    A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+
Sbjct: 367 HTKACK-AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 425

Query: 523 SEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT 579
           S++ I    +D     S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G 
Sbjct: 426 SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485

Query: 580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL 639
            RK L R    +PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+
Sbjct: 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGI 545

Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
           TLDL+  RLYWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +
Sbjct: 546 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE 605

Query: 700 AIYKANKFTGDNLTAITG 717
           AI+ AN+ TG ++  +  
Sbjct: 606 AIFSANRLTGSDVNLLAE 623

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  137 bits (345), Expect = 8e-34
 Identities = 65/301 (21%), Positives = 95/301 (31%), Gaps = 42/301 (13%)

Query: 43  TSPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCR 102
               V+       ++  F C  G CI S+W CDG  DC D  DE+ C    C  +EF C 
Sbjct: 164 RGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCS 223

Query: 103 SSPGECVPLTWMCDDNPDCSDGSDEKSCKN--RTCQASEFRCGNNRCIPNHWQCDGEFDC 160
              G C+  +  CD   DC D SDE  C N       ++F+C +  CI     C+   DC
Sbjct: 224 D--GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDC 281

Query: 161 SDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
            D SDE  + C   N C   NG CSH+C                                
Sbjct: 282 RDWSDEPIKECG-TNECLDNNGGCSHVCNDLKI--------------------------- 313

Query: 221 AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK-KCHETCRSDEFTCANGNCIQ 279
                        C  G  + +   C+  ++C D       C       +  C  G  + 
Sbjct: 314 --------GYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLD 365

Query: 280 RIWLC-DGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA 338
                                +  K T  +    +L   + +    D +         + 
Sbjct: 366 PHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL 425

Query: 339 T 339
           +
Sbjct: 426 S 426

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 26/53 (49%), Positives = 31/53 (58%)

Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
           P   N        NG C +LCLPAPQIN HSPK +CACP+G+ L  D+  C  
Sbjct: 640 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  330 bits (846), Expect = e-107
 Identities = 139/330 (42%), Positives = 204/330 (61%), Gaps = 4/330 (1%)

Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           G + C  +NGGC  KC  +     C C+ GY+L+ +  TC D++EC   G CSQ C N +
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSE 61

Query: 448 GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATA 507
           G F+C C AGY   P   + CKA      LLFA + DIR++     E T ++N+ ++A A
Sbjct: 62  GAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIA 120

Query: 508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH 567
           +DF  R  ++FWSD++  +I +A ++ GS    V+        GLAVDW++  +YWTD+ 
Sbjct: 121 LDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG 179

Query: 568 KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM 627
            + IE+AN +G  RKVL+   L++PR++AL+P++G +YW+DWG   +IE + MDGS R +
Sbjct: 180 TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI 239

Query: 628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
           +  + + WPNGLT+D   RR+YWVDAK + I   + +G +R+ V+     L HPF+I+ F
Sbjct: 240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF 297

Query: 688 EDWLYWSDWQQKAIYKANKFTGDNLTAITG 717
           ED LYW+DW  K+I  ANKFTG N   I  
Sbjct: 298 EDSLYWTDWHTKSINSANKFTGKNQEIIRN 327

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 89.1 bits (220), Expect = 4e-19
 Identities = 78/424 (18%), Positives = 137/424 (32%), Gaps = 70/424 (16%)

Query: 267 SDEFTCA--NGNCIQRIWLCDGDDDC------KDGSDEKSCQPVKCTAGQFTCQNLTACI 318
           + E  C   NG C Q+  +  G   C      +   D ++CQ V   A +  C       
Sbjct: 1   TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNS 60

Query: 319 PDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPL 378
              + C          C     +                                PD   
Sbjct: 61  EGAFQCW---------CEAGYELR-------------------------------PDRRS 80

Query: 379 MQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS 438
            +   P    +     D    L    +  +      N       +R   +   +      
Sbjct: 81  CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV---TL 137

Query: 439 CSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLF---ARKHDIRKISLDHHEM 495
              +  N  G    E V+  ++ P       A +     L+   +    I   +LD    
Sbjct: 138 DRILRANLNGSNVEEVVSTGLESPGGL----AVDWVHDKLYWTDSGTSRIEVANLDGAHR 193

Query: 496 TAIVNST-KSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLA 553
             ++  + +   AI      G I+W+D     +I  + +D GS R ++ +      +GL 
Sbjct: 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADTHLFWPNGLT 252

Query: 554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA 613
           +D+    +YW DA  + IE AN +G+ RK ++   L  P ++ +   +  +YW+DW   +
Sbjct: 253 IDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKS 310

Query: 614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY 673
            I  A         +I + + +P  +     QR+    +         D NGG   L L 
Sbjct: 311 -INSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRC------GDNNGGCTHLCLP 363

Query: 674 SPQT 677
           S Q 
Sbjct: 364 SGQN 367

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 42.1 bits (98), Expect = 5e-04
 Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 9/118 (7%)

Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMF 232
           G  +C   NG C+  C            + C C  G +L  D   C +     C      
Sbjct: 2   GEENCNVNNGGCAQKCQMIRG------AVQCTCHTGYRLTEDGRTCQD--VNECAEEGYC 53

Query: 233 RCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDC 290
              G       + C  +       D + C           AN   I+++     +   
Sbjct: 54  S-QGCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL 110

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 42.1 bits (98), Expect = 6e-04
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 170 MCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
              G N C   NG C+HLCLP+ Q        +CACP G + + +   CA+
Sbjct: 343 QPAGKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFRKI-NSHACAQ 386

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  314 bits (805), Expect = e-100
 Identities = 143/329 (43%), Positives = 218/329 (66%), Gaps = 5/329 (1%)

Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGG 449
           +EC  +NGGC H C DL +GY C C +G++L + R  C DIDEC+ P +CSQ+C+N +GG
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQDPDTCSQLCVNLEGG 59

Query: 450 FKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID 509
           +KC+C  G+  DPH    CKA    A L F  +H++RK++LD  E T+++ + ++  A+D
Sbjct: 60  YKCQCEEGFQLDPHT-KACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 118

Query: 510 FVFRTGMIFWSDISEKKIYKAPID---EGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA 566
               +  I+WSD+S++ I    +D     S    VI  D    DGLAVDWI+S+IYWTD+
Sbjct: 119 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178

Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN 626
              T+ +A+ +G  RK L R    +PR++ ++P+ G+MYW+DWG  AKI++ G++G    
Sbjct: 179 VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238

Query: 627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST 686
            ++  +I+WPNG+TLDL+  RLYWVD+KL+ ISS D NGGNR+ +L   + L+HPFS++ 
Sbjct: 239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV 298

Query: 687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI 715
           FED ++W+D   +AI+ AN+ TG ++  +
Sbjct: 299 FEDKVFWTDIINEAIFSANRLTGSDVNLL 327

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 83.7 bits (206), Expect = 3e-17
 Identities = 56/375 (14%), Positives = 110/375 (29%), Gaps = 66/375 (17%)

Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKD-GSDEKSCQPVKCTAGQFTCQNLTACIP 319
           C++     E  C +G  +     C+  D+C+D  +  + C       G + C        
Sbjct: 14  CNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVN---LEGGYKC-------- 62

Query: 320 DKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLM 379
                          C     ++   +   AV  I   F      VR    D+     L+
Sbjct: 63  --------------QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 108

Query: 380 QDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
            +         E A +                    +     S+  T I  D        
Sbjct: 109 PNLRNVVALDTEVASNRIYWSDLSQR---MICSTQLDRAHGVSSYDTVISRD-------- 157

Query: 440 SQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLF---ARKHDIRKISLDHHEMT 496
                        +   G   D  H           S ++   +    +        +  
Sbjct: 158 ------------IQAPDGLAVDWIH-----------SNIYWTDSVLGTVSVADTKGVKRK 194

Query: 497 AIVNST-KSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLAV 554
            +         AI      G ++W+D     KI K  ++ G +   ++ E+    +G+ +
Sbjct: 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITL 253

Query: 555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK 614
           D +   +YW D+  ++I   +  G  RK ++          +L   +  ++W+D    A 
Sbjct: 254 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 313

Query: 615 IERAGMDGSHRNMVI 629
                + GS  N++ 
Sbjct: 314 FSANRLTGSDVNLLA 328

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 26/51 (50%), Positives = 31/51 (60%)

Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
           P   N        NG C +LCLPAPQIN HSPK +CACP+G+ L  D+  C
Sbjct: 346 PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 396

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 22/105 (20%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
           I+K  L+  ++ ++V    +    I     +G ++W D     I    ++ G  R  ++E
Sbjct: 227 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE 285

Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELAN-FEGTMRKVLVRS 587
           ++K +A   ++      ++WTD     I  AN   G+   +L  +
Sbjct: 286 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN 330

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  302 bits (776), Expect = 4e-98
 Identities = 77/253 (30%), Positives = 132/253 (52%), Gaps = 11/253 (4%)

Query: 477 LLFARKHDIRKISLDHHEMTAIVNST------KSATAIDFVFRTGMIFWSDISEKKIYKA 530
           LLFA+   I ++ L+ + M             K    + F     +++W+DISE  I +A
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
            +  G E T +I +D    +G+A+D +   I+WTD+  + IE+A  +GT R+VL  + L 
Sbjct: 64  SLH-GGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122

Query: 591 EPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649
            PR +  +P+ G +YW+DW + N KIE + MDG++R ++   ++  PNGLT D    +L 
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182

Query: 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709
           WVDA  +     +     RR VL   + L +PF+++++   LY++DW+  ++   +    
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239

Query: 710 DNLTAITGVHQTH 722
             +       QT 
Sbjct: 240 KEMDTFHPHKQTR 252

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 7/75 (9%), Positives = 23/75 (30%), Gaps = 2/75 (2%)

Query: 480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT 539
           A  H    ++        ++   +   A+   +    ++++D     +    +    E  
Sbjct: 186 AGTHRAECLNPAQPGRRKVLEGLQYPFAVT-SYG-KNLYYTDWKTNSVIAMDLAISKEMD 243

Query: 540 VVIEEDKTIADGLAV 554
                 +T   G+ +
Sbjct: 244 TFHPHKQTRLYGITI 258

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  273 bits (699), Expect = 4e-86
 Identities = 103/253 (40%), Positives = 163/253 (64%), Gaps = 5/253 (1%)

Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE 534
           A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I    +D 
Sbjct: 2   AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61

Query: 535 G---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
               S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R    +
Sbjct: 62  AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121

Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
           PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  RLYWV
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181

Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
           D+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ TG +
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241

Query: 712 LTAITGVHQTHEP 724
           +  +        P
Sbjct: 242 VNLL--AENLLSP 252

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 62.0 bits (150), Expect = 1e-10
 Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 173 GVNHCAAV---NGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
           GVN C      NG C +LCLPAPQIN HSPK +CACP+G+ L  D+  C
Sbjct: 266 GVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 2/112 (1%)

Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
           I+K  L+  ++ ++V    +    I     +G ++W D     I    ++ G  R  ++E
Sbjct: 145 IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILE 203

Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSL 595
           ++K +A   ++      ++WTD     I  AN        L+   L  P  +
Sbjct: 204 DEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 255

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 369 VCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSS 422
             D      L Q      C        NGGC + C+  P        + C C +G  L+ 
Sbjct: 252 PEDMVLFHNLTQPRGVNWCE--RTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR 309

Query: 423 NRHTCI 428
           +  +C+
Sbjct: 310 DMRSCL 315

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  265 bits (677), Expect = 2e-82
 Identities = 124/295 (42%), Positives = 183/295 (62%), Gaps = 5/295 (1%)

Query: 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKIS 489
           ++EC   G CSQ C N +G F+C C AGY   P     CKA      LLFA + DIR++ 
Sbjct: 1   VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDR-RSCKALGPEPVLLFANRIDIRQVL 59

Query: 490 LDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA 549
               E T ++N+ ++A A+DF  R  ++FWSD++  +I +A ++ GS    V+       
Sbjct: 60  PHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLESP 118

Query: 550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW 609
            GLAVDW++  +YWTD+  + IE+AN +G  RKVL+   L++PR++AL+P++G +YW+DW
Sbjct: 119 GGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW 178

Query: 610 GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR 669
           G   +IE + MDGS R ++  + + WPNGLT+D   RR+YWVDAK + I   + +G +R+
Sbjct: 179 GNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 238

Query: 670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI-TGVHQTHE 723
            V+     L HPF+I+ FED LYW+DW  K+I  ANKFTG N   I   +H   +
Sbjct: 239 AVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMD 291

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 170 MCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
              G N C   NG C+HLCLP+ Q        +CACP G + +       E
Sbjct: 300 QPAGKNRCGDNNGGCTHLCLPSGQ------NYTCACPTGFRKINSHACALE 344

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
                  G + C  +NGGC H C+     Y C C  G++  ++    +++
Sbjct: 296 HPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACALEV 345

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  258 bits (660), Expect = 2e-80
 Identities = 109/245 (44%), Positives = 157/245 (64%), Gaps = 4/245 (1%)

Query: 473 GHASLLFARKHDIRKISL--DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKA 530
               LL+A + D+R +         T +V   + A A+DFVF  G+I+WSD+SE+ I + 
Sbjct: 3   SAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62

Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
             ++      V+       DGLA DW+   +YWTD+  N IE++N +G++RKVL    LD
Sbjct: 63  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122

Query: 591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYW 650
           +PR++AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLTLD  +++LYW
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYW 182

Query: 651 VDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD 710
            DAKLN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +I   NK+TG+
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHSILACNKYTGE 240

Query: 711 NLTAI 715
            L  I
Sbjct: 241 GLREI 245

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  117 bits (293), Expect = 6e-29
 Identities = 52/210 (24%), Positives = 96/210 (45%), Gaps = 13/210 (6%)

Query: 483 HDIRKISLDHHEMTAIVNSTKSAT----AIDFVFRTGMIFWSDISEKKIYKAPIDEGSER 538
             I++   +  E    V  +   +    A D++     ++W+D    +I  + +D GS R
Sbjct: 57  EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL--GEKLYWTDSETNRIEVSNLD-GSLR 113

Query: 539 TVVIEEDKTIADGLAVDWIYSHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLAL 597
            V+  ++      +A+D     +YWTD  +   IE A  +G+ R +++ S +  P  L L
Sbjct: 114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTL 173

Query: 598 NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE 657
           +  +  +YW+D   N  I ++ +DG++R  V+   +  P  LTL   +  LYW D   + 
Sbjct: 174 DYEEQKLYWADAKLN-FIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTDWSTHS 230

Query: 658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTF 687
           I +C+   G     ++S   +  P  I  F
Sbjct: 231 ILACNKYTGEGLREIHS--DIFSPMDIHAF 258

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGS 223
           N  N C   NG CSHLCL +P      P   CACP G+KLL +   C +  S
Sbjct: 265 NATNPCGIDNGGCSHLCLMSP----VKPFYQCACPTGVKLLENGKTCKDGNS 312

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 373 HPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPV--GYMCECNEGYKLSSNRHTCIDI 430
            P       +       + C  DNGGC H C+  PV   Y C C  G KL  N  TC D 
Sbjct: 251 SPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG 310

Query: 431 DECETP 436
           +     
Sbjct: 311 NSHHHH 316

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  261 bits (667), Expect = 7e-78
 Identities = 107/341 (31%), Positives = 172/341 (50%), Gaps = 10/341 (2%)

Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQI 442
           D +   +  C K  G  L +        M      +  S  R            G CS +
Sbjct: 230 DWSTHSILACNKYTGEGLREIHSDIFSPMD----IHAFSQQRQPNATNPCGIDNGGCSHL 285

Query: 443 CLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---V 499
           CL        +C            +         LL AR+ D+R+ISLD  + T I   +
Sbjct: 286 CLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQL 345

Query: 500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS 559
              + A AID+    G I+W+D   + I ++ ID GS    V+       DG+AVDW+  
Sbjct: 346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVAR 404

Query: 560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG 619
           ++YWTD   + IE+    GTMRK+L+   L+EPR++ L+P+ G+MYW+DWG+  KIERA 
Sbjct: 405 NLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464

Query: 620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS 679
           +DGS R +++ + + WPNGL LD  + ++YW DAK ++I   + +G  RR+++     + 
Sbjct: 465 LDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--IP 522

Query: 680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ 720
           H F  +   D++YW+DWQ+++I + +K + +    I  +  
Sbjct: 523 HIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPD 563

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  255 bits (651), Expect = 1e-75
 Identities = 111/255 (43%), Positives = 160/255 (62%), Gaps = 7/255 (2%)

Query: 463 HHPTQCKAAEGHASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWS 520
           HH            LL+A + D+R +   +     T +V   + A A+DFVF  G+I+WS
Sbjct: 1   HH---HHHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWS 57

Query: 521 DISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580
           D+SE+ I +   ++      V+       DGLA DW+   +YWTD+  N IE++N +G++
Sbjct: 58  DVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117

Query: 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT 640
           RKVL    LD+PR++AL+P  G+MYW+DWG+  KIERAGMDGS R ++I S+I WPNGLT
Sbjct: 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLT 177

Query: 641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKA 700
           LD  +++LYW DAKLN I   + +G NR+ V+    +L HPF+++ FED LYW+DW   +
Sbjct: 178 LDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFEDILYWTDWSTHS 235

Query: 701 IYKANKFTGDNLTAI 715
           I   NK+TG+ L  I
Sbjct: 236 ILACNKYTGEGLREI 250

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  138 bits (348), Expect = 2e-34
 Identities = 76/328 (23%), Positives = 124/328 (37%), Gaps = 13/328 (3%)

Query: 379 MQDEDPTKCGVDECAKDNGGCLHKCVDLPV--GYMCECNEGYKLSSNRHTCIDIDECETP 436
              +       + C  DNGGC H C+  PV   Y C C  G KL  N  TC D       
Sbjct: 262 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLL 321

Query: 437 GS----CSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDH 492
            +      +I L+             I+           EG+          IR+  +D 
Sbjct: 322 LARRTDLRRISLDTPDFTDIVLQLEDIRHAIAID-YDPVEGYIYWTDDEVRAIRRSFIDG 380

Query: 493 HEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG 551
                +V +       I   +    ++W+D    +I    ++ G+ R ++I ED      
Sbjct: 381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLN-GTMRKILISEDLEEPRA 439

Query: 552 LAVDWIYSHIYWTDAHKN-TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG 610
           + +D +  ++YWTD  +   IE A  +G+ R VLV + L  P  LAL+  +G +YW D  
Sbjct: 440 IVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAK 499

Query: 611 QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRL 670
            + KIE    DG+ R +++   I    G TL      +YW D +   I         R +
Sbjct: 500 TD-KIEVMNTDGTGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREV 556

Query: 671 VLYSPQTLSHPFSISTFEDWLYWSDWQQ 698
           ++     L    + +           ++
Sbjct: 557 IIDQLPDLMGLKATNVHRVIGSNPCAEE 584

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 51.4 bits (122), Expect = 8e-07
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 155 DGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPD 214
           D   D       +     G N CA  NG CSHLCL  PQ       + CACP G +L+ D
Sbjct: 559 DQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQ------GLRCACPIGFELISD 612

Query: 215 LLMC 218
           +  C
Sbjct: 613 MKTC 616

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 4/129 (3%)

Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
           I + +LD  +   +VN++      +   +  G I+W D    KI     D G+ R V++E
Sbjct: 460 IERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD-GTGRRVLVE 518

Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW 603
           +      G  +     ++YWTD  + +IE  +     R+V++    D     A N     
Sbjct: 519 DKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVI 576

Query: 604 MYWSDWGQN 612
                  +N
Sbjct: 577 GSNPCAEEN 585

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.4 bits (117), Expect = 3e-06
 Identities = 20/63 (31%), Positives = 28/63 (44%)

Query: 366 RTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRH 425
              +        L         G + CA++NGGC H C+  P G  C C  G++L S+  
Sbjct: 555 EVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMK 614

Query: 426 TCI 428
           TCI
Sbjct: 615 TCI 617

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  252 bits (645), Expect = 1e-74
 Identities = 89/318 (27%), Positives = 148/318 (46%), Gaps = 16/318 (5%)

Query: 411 MCECNEGYKLSSNRHTCIDIDECETP-GSCSQICL-NEKGGFKCECVAGYIKDPHHPTQC 468
                    L  +       +EC +  G CS +CL    GGF C C A Y  +  + T  
Sbjct: 246 GHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCS 305

Query: 469 KAAEGHASLLFARKHDIRKISLDHHEMTAI---VNSTKSATAIDFVFRTGMIFWSDISEK 525
                     F++K  I ++ +D  +   I   ++S ++  AID+      ++W D  + 
Sbjct: 306 APTTFLL---FSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQN 362

Query: 526 KIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM 580
            I KA  D     TVV+     +  +     L++D    +IYWT    N I +   +G  
Sbjct: 363 MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRS 422

Query: 581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGL 639
             V+++   D PR++ +NP  G+MY+++  + + KIERA +DG+ R ++  S +  P  L
Sbjct: 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIAL 482

Query: 640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK 699
            LD    +L+W D+ L  I S D +G NR ++  S   +  P  ++ FE+WLYW D QQ+
Sbjct: 483 ALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSN--ILQPVGLTVFENWLYWIDKQQQ 540

Query: 700 AIYKANKFTGDNLTAITG 717
            I K +    +  T +  
Sbjct: 541 MIEKIDMTGREGRTKVQA 558

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  248 bits (635), Expect = 4e-73
 Identities = 102/244 (41%), Positives = 152/244 (62%), Gaps = 7/244 (2%)

Query: 475 ASLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI 532
           A LLF+R+ DIR+ISL+ +     +     K A+A+DF      I+W+DIS K I +A +
Sbjct: 7   AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFM 66

Query: 533 DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEP 592
           + GS    V+E      +G+AVDW+  ++YW D   N IE++  +G  R+VLV   LD P
Sbjct: 67  N-GSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 125

Query: 593 RSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD 652
           R+LAL+P +G+MYW++WG   KI+RA MDGS R   +V ++   NGLT+D  +RRLYW D
Sbjct: 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-TTLVPNVGRANGLTIDYAKRRLYWTD 184

Query: 653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNL 712
              N I S +  G NR ++      L HPF ++ ++D++YW+DW +++I +ANK +G N 
Sbjct: 185 LDTNLIESSNMLGLNREVIA---DDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241

Query: 713 TAIT 716
           T I 
Sbjct: 242 TIIQ 245

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 73.3 bits (179), Expect = 1e-13
 Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 56/294 (19%)

Query: 485 IRKISLD-HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVVI 542
           I    LD  H    +     S  A+      G ++W++   K KI +A +D GSERT ++
Sbjct: 104 IEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD-GSERTTLV 162

Query: 543 EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG 602
                  +GL +D+    +YWTD   N IE +N  G  R+V+    L  P  L       
Sbjct: 163 PNVGRA-NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD-LPHPFGLTQY--QD 218

Query: 603 WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD---------- 652
           ++YW+DW + + IERA         +I   + +   + +    R+  W +          
Sbjct: 219 YIYWTDWSRRS-IERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSH 277

Query: 653 ------------------------------------AKLNEISSCDYNGGNRRLVLYSPQ 676
                                               ++ + I+    +      ++    
Sbjct: 278 LCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIH 337

Query: 677 TLSHPFSI--STFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP 728
           +L +  +I     +  LYW D +Q  I KA +      T +     +      P
Sbjct: 338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQP 391

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 4/126 (3%)

Query: 485 IRKISLDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE 543
           I + +LD  E   +  S      A+    R G +FW+D   ++I  + +  G+ R V+ +
Sbjct: 458 IERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS-GANRIVLED 516

Query: 544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW 603
            +     GL V    + +YW D  +  IE  +  G   +  V++ + +   +        
Sbjct: 517 SNILQPVGLTVF--ENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNL 574

Query: 604 MYWSDW 609
             +   
Sbjct: 575 QEYRQH 580

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 46.0 bits (108), Expect = 4e-05
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 168 PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE 220
                  + CA  NG CSH+CL             C+CP  L LL D L C  
Sbjct: 573 NLQEYRQHPCAQDNGGCSHICLVKGDGTT-----RCSCPMHLVLLQDELSCGG 620

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 43.3 bits (101), Expect = 3e-04
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 371 DKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCID 429
            +  D   +++ +  +     CA+DNGGC H C+    G   C C     L  +  +C  
Sbjct: 561 AQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620

Query: 430 IDEC 433
               
Sbjct: 621 TKHH 624

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score =  161 bits (408), Expect = 1e-44
 Identities = 25/242 (10%), Positives = 79/242 (32%), Gaps = 24/242 (9%)

Query: 476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAI--DFVFRTGMIFWSDISEKKIYKAPID 533
           +     ++ + +I  + H  T +        ++  ++++    + +   +   +Y+  ID
Sbjct: 81  TFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIY---YLHYDTQTATSLYRIRID 137

Query: 534 EGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPR 593
            G E+  +             +    + Y+ +     +   +       +       +P 
Sbjct: 138 -GEEKKKIKNHY-----LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPV 191

Query: 594 SLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA 653
            L     D  +Y+ D  ++  I    ++  +  ++  ++I+  N           Y    
Sbjct: 192 VLD----DTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG----SLIFYQRGG 243

Query: 654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLT 713
               +     +G   + +           +I+    ++Y++D+     Y  +    D + 
Sbjct: 244 DNPALCVVKNDGTGFKELAK-----GEFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIK 298

Query: 714 AI 715
           A+
Sbjct: 299 AL 300

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 82.8 bits (204), Expect = 2e-17
 Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 28/214 (13%)

Query: 515 GMIFWSDISEK-KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL 573
           G +F+S+ ++  ++Y   ID GS    +  +    A  +  D   +++Y+   +   I  
Sbjct: 26  GEVFFSNTNDNGRLYAMNID-GSNIHKLSNDT---AMYINADK--NYVYYVRNNNQKITS 79

Query: 574 ANFEGTMRKVLVRSYLD--------EPRSLALNPIDGWMYWSDW--GQNAKIERAGMDGS 623
             F    R  L R   +            +  + I  ++Y+  +       + R  +DG 
Sbjct: 80  QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE 139

Query: 624 HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS 683
            +  +    +      T +   R  Y+ + K  ++   D    +  L          P  
Sbjct: 140 EKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN--CYKPVV 192

Query: 684 ISTFEDWLYWSDWQQKA-IYKANKFTGDNLTAIT 716
           +   +  +Y+ D  +   I   N     N   +T
Sbjct: 193 LD--DTNVYYMDVNRDNAIVHVNI-NNPNPVVLT 223

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 18/194 (9%), Positives = 60/194 (30%), Gaps = 35/194 (18%)

Query: 555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW----- 609
             ++   +        +   N +G+    L         ++ +N    ++Y+        
Sbjct: 26  GEVF---FSNTNDNGRLYAMNIDGSNIHKLS-----NDTAMYINADKNYVYYVRNNNQKI 77

Query: 610 -------GQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV---DAKLNEIS 659
                       + R   +G    ++      +       L+   +Y++         + 
Sbjct: 78  TSQTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYA-----SLIGNYIYYLHYDTQTATSLY 132

Query: 660 SCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH 719
               +G  ++ +          F+ +T + + Y+++ +   +Y+ +     +       +
Sbjct: 133 RIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYD-TASQSEALFYDCN 186

Query: 720 QTHEPLNSPGTNEY 733
             ++P+    TN Y
Sbjct: 187 -CYKPVVLDDTNVY 199

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 18/144 (12%), Positives = 45/144 (31%), Gaps = 19/144 (13%)

Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVI---VSDIKWPNG-----LTLDLVQRRLYWVD 652
           DG +++S+   N ++    +DGS+ + +       I             +       +  
Sbjct: 25  DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVRNNNQKITSQTFFS 84

Query: 653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW---QQKAIYKANKFTG 709
              N +     NG    ++   P   +         +++Y+  +      ++Y+     G
Sbjct: 85  YDRNSLCRIKRNGHGSTVLDPDPCIYASL-----IGNYIYYLHYDTQTATSLYRIRI-DG 138

Query: 710 DNLTAITGVHQTHEPLNSPGTNEY 733
           +    I   +      N+     Y
Sbjct: 139 EEKKKIK--NHYLFTCNTSDRYFY 160

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score =  112 bits (282), Expect = 5e-30
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 92  RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNH 151
           + C Q EF C    G+C+   ++CD + DC DGSDE SC   TC  + F+C ++ CIP  
Sbjct: 1   KTCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQL 58

Query: 152 WQCDGEFDCSDKSDEDPEMCNG 173
           W CD + DC D SDE P+ C G
Sbjct: 59  WACDNDPDCEDGSDEWPQRCRG 80

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score =  102 bits (257), Expect = 1e-26
 Identities = 33/70 (47%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHE-TCRSDEFTCANGNCIQRIWLCDGDDDC 290
           FRC  G CI   +VCD   DC DG DE  C   TC    F C +  CI ++W CD D DC
Sbjct: 8   FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDC 67

Query: 291 KDGSDEKSCQ 300
           +DGSDE   +
Sbjct: 68  EDGSDEWPQR 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 99.7 bits (249), Expect = 1e-25
 Identities = 34/72 (47%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
           FRC  G CI   +VCD   DC DG DE  C    CG   F C S    C+P  W CD++P
Sbjct: 8   FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS--STCIPQLWACDNDP 65

Query: 120 DCSDGSDEKSCK 131
           DC DGSDE   +
Sbjct: 66  DCEDGSDEWPQR 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 93.9 bits (234), Expect = 2e-23
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 263 ETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKW 322
           +TC   EF C +G CI R ++CD D DC DGSDE SC  + C    F C + + CIP  W
Sbjct: 1   KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLW 59

Query: 323 VCDGD 327
            CD D
Sbjct: 60  ACDND 64

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score =  104 bits (261), Expect = 7e-27
 Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 375 DCPLMQDEDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
           D P  ++       G +EC  +NGGC + C DL +GY C C +G++L + R  C DIDEC
Sbjct: 14  DIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDEC 72

Query: 434 ETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469
           + P +CSQ+C+N +GG+KC+C  G+  DPH    CK
Sbjct: 73  QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CK 107

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 60.8 bits (148), Expect = 2e-11
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 5/59 (8%)

Query: 401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEKGGFKCECVAGY 458
           H        Y     E           +  +EC    G CS +C + K G++C C  G+
Sbjct: 4   HHHHHPMSDYDIPTTENLYF----QGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGF 58

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 154 CDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLP 213
              ++D     +   +   G N C   NG CS++C           +  C CP+G +L+ 
Sbjct: 9   PMSDYDIPTTENLYFQGAMGTNECLDNNGGCSYVCNDLK----IGYE--CLCPDGFQLVA 62

Query: 214 D 214
            
Sbjct: 63  Q 63

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score =  102 bits (257), Expect = 1e-26
 Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 223 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC---HETCRSDEFTCANGNCIQ 279
           ++ C     F C  G CIP +W CD  +DC D  DE             +FTC NG CI 
Sbjct: 2   ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60

Query: 280 RIWLCDGDDDCKDGSDEKSC 299
             W CD D+DC D SDE  C
Sbjct: 61  INWRCDNDNDCGDNSDEAGC 80

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 98.1 bits (245), Expect = 4e-25
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 4/75 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC--KNRTCQASEFRCGNNRCIPNH 151
           C   +F+C S  G C+P++W CD + DC D SDE +          ++F C N RCI  +
Sbjct: 5   CPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININ 62

Query: 152 WQCDGEFDCSDKSDE 166
           W+CD + DC D SDE
Sbjct: 63  WRCDNDNDCGDNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 94.7 bits (236), Expect = 9e-24
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 51  SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC--QKRICGQEEFTCRSSPGEC 108
           ++ C     F C  G CIP +W CD  +DC D  DE             +FTC +  G C
Sbjct: 2   ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN--GRC 58

Query: 109 VPLTWMCDDNPDCSDGSDEKSCKN 132
           + + W CD++ DC D SDE  C +
Sbjct: 59  ININWRCDNDNDCGDNSDEAGCSH 82

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 88.1 bits (219), Expect = 2e-21
 Identities = 30/66 (45%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVK--CTAGQFTCQNLTACIPDK 321
           TC  ++F+CA+G CI   W CD DDDC D SDE +           QFTC N   CI   
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN-GRCININ 62

Query: 322 WVCDGD 327
           W CD D
Sbjct: 63  WRCDND 68

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 35/129 (27%), Positives = 40/129 (31%), Gaps = 51/129 (39%)

Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAP 192
           RTC  ++F C + RCIP  W CD + DC D+SDE                          
Sbjct: 3   RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA--------------------- 41

Query: 193 QINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDC 252
                                            C   T F C  G CI   W CD  NDC
Sbjct: 42  ------------------------------YPTCFPLTQFTCNNGRCININWRCDNDNDC 71

Query: 253 PDGVDEKKC 261
            D  DE  C
Sbjct: 72  GDNSDEAGC 80

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  105 bits (262), Expect = 1e-23
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 5/147 (3%)

Query: 60  FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNP 119
              +   C  +     G  D  D V   +        + F C +  G+ +     CD   
Sbjct: 171 LETSLAECTFTKRRTMGYQDFADVVCYTQKADS-PMDDFFQCVN--GKYISQMKACDGIN 227

Query: 120 DCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAA 179
           DC D SDE  C  + CQ   F C +  CIP+ +QC+GE DC    DE             
Sbjct: 228 DCGDQSDELCC--KACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEE 285

Query: 180 VNGHCSHLCLPAPQINAHSPKISCACP 206
                + +     +I +  PK+SC   
Sbjct: 286 TEILTADMDAERRRIKSLLPKLSCGVK 312

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  104 bits (261), Expect = 1e-23
 Identities = 54/280 (19%), Positives = 80/280 (28%), Gaps = 43/280 (15%)

Query: 59  MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDN 118
           +F      CI  T VC     CP      K    +C       RS P  C   +  C   
Sbjct: 28  VFCQPWQRCIEGTCVCKLPYQCP------KNGTAVCAT---NRRSFPTYCQQKSLECLHP 78

Query: 119 PDCSDGSDEKSCKNRTCQASEFRCGNNR-----CIPNHWQCDGEFDCSDKSDEDPEMCNG 173
              +   +  +C      +   + GN        +    Q    F C             
Sbjct: 79  --GTKFLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSM------- 129

Query: 174 VNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFR 233
                  N  C  L            +   +           + C               
Sbjct: 130 ----REANVACLDLGFQQGA--DTQRRFKLSDLSINSTECLHVHC-----------RGLE 172

Query: 234 CTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDG 293
            +   C  +     G  D  D V   +  ++   D F C NG  I ++  CDG +DC D 
Sbjct: 173 TSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ 232

Query: 294 SDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS 333
           SDE  C    C    F C++   CIP ++ C+G+      
Sbjct: 233 SDELCC--KACQGKGFHCKS-GVCIPSQYQCNGEVDCITG 269

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 79.2 bits (195), Expect = 2e-15
 Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 8/117 (6%)

Query: 51  SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVP 110
                    F+C  G  I     CDG NDC D  DE  C+   C  + F C+S  G C+P
Sbjct: 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHCKS--GVCIP 255

Query: 111 LTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
             + C+   DC  G DE  C                 +      +     S      
Sbjct: 256 SQYQCNGEVDCITGEDEVGCAGFAS----VAQEETEILTADMDAERRRIKSLLPKLS 308

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 78.4 bits (193), Expect = 3e-15
 Identities = 39/236 (16%), Positives = 55/236 (23%), Gaps = 69/236 (29%)

Query: 64  GGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSD 123
            G      +     +          C+    G E     +S  EC           D +D
Sbjct: 143 QGADTQRRFKLSDLSINSTECLHVHCR----GLE-----TSLAECTFTKRRTMGYQDFAD 193

Query: 124 GSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGH 183
                   + +     F+C N + I     CDG  DC D+   D   C            
Sbjct: 194 VVCYTQKAD-SPMDDFFQCVNGKYISQMKACDGINDCGDQ--SDELCC------------ 238

Query: 184 CSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPST 243
                                                           F C  G+CIPS 
Sbjct: 239 -----------------------------------------KACQGKGFHCKSGVCIPSQ 257

Query: 244 WVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           + C+G+ DC  G DE  C       +                     K    + SC
Sbjct: 258 YQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAE----RRRIKSLLPKLSC 309

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 39/336 (11%), Positives = 64/336 (19%), Gaps = 82/336 (24%)

Query: 128 KSCKNRTCQASEFRCGNNRCI---PNHWQCDGEFDCSDKSDEDPEMCNGVNH-CAAVNGH 183
            SC    CQ  + RC    C+   P     +G   C+      P  C   +  C      
Sbjct: 23  LSCDKVFCQPWQ-RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGTK 81

Query: 184 CSHL--CLPAPQ-----INAHSPKISCACPEGLKLLPDLLMCAE-----AGSKPCRNSTM 231
             +   C    +      + ++        + +     + +C         +  C +   
Sbjct: 82  FLNNGTCTAEGKFSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLD-LG 140

Query: 232 FRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCK 291
           F+   G      +     +          C           +   C        G  D  
Sbjct: 141 FQ--QGADTQRRFKLSDLSINSTECLHVHCRG------LETSLAECTFTKRRTMGYQDFA 192

Query: 292 DGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAV 351
           D                F C N    I     CDG                         
Sbjct: 193 DVVCYTQKADS-PMDDFFQCVNGK-YISQMKACDG------------------------- 225

Query: 352 AFIPPGFAMAMKIVRTAVCDKHPDCPLMQDE--------DPTKCGVDECAKDNGGCLHKC 403
                                  DC    DE            C    C      C  + 
Sbjct: 226 ---------------------INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEV 264

Query: 404 VDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSC 439
             +       C     ++      +  D        
Sbjct: 265 DCITGEDEVGCAGFASVAQEETEILTADMDAERRRI 300

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 89.3 bits (222), Expect = 8e-22
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
           VDEC+     C    C ++P  + CEC EGY+ +    +C DIDEC     C+Q+C+N  
Sbjct: 3   VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYP 61

Query: 448 GGFKCEC 454
           GG+ C C
Sbjct: 62  GGYTCYC 68

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 46.9 bits (112), Expect = 6e-07
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECN--EGYKLSSNRHTCIDI 430
           +DEC+     C   CV+ P GY C C+  +G+KL+ ++ +C  +
Sbjct: 45  IDECS--ENMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 429 DIDECET-PGSC-SQICLNEKGGFKCECVAGYIKDP 462
           D+DEC   P  C + +C N  G F+CEC  GY  + 
Sbjct: 2   DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNL 37

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 87.0 bits (216), Expect = 1e-20
 Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQI 442
            P +    +   +   C   C D      CEC EGY L  +   C DIDECE  G CS +
Sbjct: 35  IPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILD-DGFICTDIDECENGGFCSGV 92

Query: 443 CLNEKGGFKCECVAGYIKDPHHPTQC 468
           C N  G F+C C           T C
Sbjct: 93  CHNLPGTFECICGPDSALAGQIGTDC 118

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 389 VDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSN-RHTCIDIDECETPGSCSQICLNE 446
           VD C      C ++C  L    Y+C C EG+    +  H C          +C   C + 
Sbjct: 4   VDPCF--RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQ---TACPADC-DP 57

Query: 447 KGGFKCECVAGYIKDPHH 464
                CEC  GYI D   
Sbjct: 58  NTQASCECPEGYILDDGF 75

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 2/42 (4%)

Query: 429 DIDECETPGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCK 469
            +D C    +C   C       + C C  G+   PH P +C+
Sbjct: 3   PVDPCFR-ANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQ 43

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 78.8 bits (195), Expect = 3e-18
 Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETP-GSCSQICLNEK 447
           +DEC + +     +C++    Y CEC  GY L+ N   C+D DEC       +  C N  
Sbjct: 5   MDECKEPDVCKHGQCINTDGSYRCECPFGYILAGN--ECVDTDECSVGNPCGNGTCKNVI 62

Query: 448 GGFKCECVAGYIKDPHH 464
           GGF+C C  G+   P  
Sbjct: 63  GGFECTCEEGFEPGPMM 79

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 426 TCIDIDECETPGSC-SQICLNEKGGFKCECVAGYIKDPHH 464
           + +D+DEC+ P  C    C+N  G ++CEC  GYI   + 
Sbjct: 1   SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE 40

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 44.9 bits (107), Expect = 2e-06
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 383 DPTKCG-VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
              +C   DEC+  N      C ++  G+ C C EG++      TC
Sbjct: 37  AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC 81

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 2/76 (2%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
           V+EC          CV+ P  Y+C+C   ++L+  R  C+D                + G
Sbjct: 3   VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG--NCYLDIRPRGDNG 60

Query: 449 GFKCECVAGYIKDPHH 464
              C    G       
Sbjct: 61  DTACSNEIGVGVSKAS 76

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 2/84 (2%)

Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSC 439
            +    C + +                   +C   EG++ +       DIDEC+  PG C
Sbjct: 73  SKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLC 132

Query: 440 S-QICLNEKGGFKCECVAGYIKDP 462
               C+N  G F+C C  GY  + 
Sbjct: 133 QGGKCINTFGSFQCRCPTGYYLNE 156

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 67.8 bits (166), Expect = 2e-13
 Identities = 10/74 (13%), Positives = 15/74 (20%), Gaps = 3/74 (4%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
                  N     +         C    G  +S     C       TP          + 
Sbjct: 44  TRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEY 100

Query: 449 GFKCECVAGYIKDP 462
              C    G+  +P
Sbjct: 101 KILCPGGEGFRPNP 114

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTC 427
           +DEC +  G C   KC++    + C C  GY L+ +   C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 429 DIDECETPGS-CSQICLNEKGGFKCECVAGYIKDP 462
           D++EC  P +  S  C+N  G + C+C   +  +P
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 75.8 bits (187), Expect = 4e-17
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)

Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCIDIDECET-PGSC-SQICL 444
           +DEC      C   +CV+ P  + C+C+EGY+        C+DIDEC+  P  C   +C 
Sbjct: 3   IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCH 62

Query: 445 NEKGGFKCECVAGYIKDP 462
           N +G ++CEC  G+   P
Sbjct: 63  NTEGSYRCECPPGHQLSP 80

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 389 VDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCI 428
           +DEC +D   C    C +    Y CEC  G++LS N   CI
Sbjct: 46  IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 86

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC 468
           DIDEC   P  C +  C+N  G F+C+C  GY         C
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 79.2 bits (194), Expect = 8e-17
 Identities = 28/193 (14%), Positives = 48/193 (24%), Gaps = 18/193 (9%)

Query: 115 CDDNPDCSDGSDEK--SCKNRTCQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDEDPEM 170
            D +         +  + +   C   E  C  +   CI +   CDGE DC D SDEDPE 
Sbjct: 32  HDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 91

Query: 171 CNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNST 230
           C+        +                +P  +                        R + 
Sbjct: 92  CSLNITHVGSSYTG---LATWTSCEDLNPDHAIVTITAAHRKSFF-----PNRVWLRATL 143

Query: 231 MFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCA-----NGNCIQRIWLC 284
            +         ST    G  +                     C      + +   +I + 
Sbjct: 144 SYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFNLGDDDHADCKIVVP 203

Query: 285 DGDDDCKDGSDEK 297
                C   + ++
Sbjct: 204 SSLFVCAHFNAQR 216

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 35/209 (16%), Positives = 55/209 (26%), Gaps = 25/209 (11%)

Query: 70  STWVCDGQNDCPDGVDEK--KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE 127
           +    D        +  +    ++  C + E  CR    EC+     CD   DC DGSDE
Sbjct: 28  NKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87

Query: 128 KSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHL 187
                 TC  +    G++      W       C D + +        +    +       
Sbjct: 88  DPE---TCSLNITHVGSSYTGLATWT-----SCEDLNPD--------HAIVTITAAHRKS 131

Query: 188 CLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCD 247
             P       +        +       L      G +      +     G       +CD
Sbjct: 132 FFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR----ELLLAPLKGQSEGYGVICD 187

Query: 248 GQNDCPDGVDEKKCHETCRSDEFTCANGN 276
                    D   C     S  F CA+ N
Sbjct: 188 FNLGDD---DHADCKIVVPSSLFVCAHFN 213

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 64.5 bits (156), Expect = 8e-12
 Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 9/132 (6%)

Query: 60  FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC---QKRICGQEEFTCRSSPGECVPLTW- 113
             C G    CI     CDG+ DC DG DE               +T  ++   C  L   
Sbjct: 59  SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPD 118

Query: 114 MCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNG 173
                   +        +        +    +    +  Q  G ++   +      +   
Sbjct: 119 HAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKREL---LLAPL 175

Query: 174 VNHCAAVNGHCS 185
                     C 
Sbjct: 176 KGQSEGYGVICD 187

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 56.1 bits (134), Expect = 5e-09
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 242 STWVCDGQNDCPDGVDEKKCH---ETCRSDEFTCAN--GNCIQRIWLCDGDDDCKDGSDE 296
           +    D        +  +  +     C   E  C      CI  +  CDG+ DC+DGSDE
Sbjct: 28  NKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 87

Query: 297 KSCQPVKCTAGQFTCQNLTACIPDKWVCDG 326
                  C+       +    +     C+ 
Sbjct: 88  DPET---CSLNITHVGSSYTGLATWTSCED 114

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 21/190 (11%), Positives = 31/190 (16%), Gaps = 49/190 (25%)

Query: 153 QCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLL 212
           +     +  +K   D +        A ++    H C                        
Sbjct: 19  KLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDE---------------------- 56

Query: 213 PDLLMCAEAGSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDE------KKCHET 264
                                C G    CI     CDG+ DC DG DE            
Sbjct: 57  -----------------HESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHV 99

Query: 265 CRSDEFTCANGNCIQRIW-LCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWV 323
             S        +C                       +        +              
Sbjct: 100 GSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRATLSYELDE-HDHTVSTTQ 158

Query: 324 CDGDTVEKDS 333
             G       
Sbjct: 159 LRGFYNFGKR 168

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 42.2 bits (98), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 5/67 (7%)

Query: 266 RSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKS----CQPVKCTAGQFTCQN-LTACIPD 320
             D       +  +       D D K     K+     +   C   +  C+  +  CI D
Sbjct: 12  HIDYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHD 71

Query: 321 KWVCDGD 327
              CDG+
Sbjct: 72  LLFCDGE 78

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 73.4 bits (180), Expect = 2e-16
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 88  KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRC 147
           K + + CG   F+C  +   CVP  W+CD + DC+DG+DE         ++    G+   
Sbjct: 3   KLEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGST 61

Query: 148 IPNHWQCDGEFDCSDK 163
                +         K
Sbjct: 62  EELRVRLASHLRKLRK 77

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 258 EKKCHETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTA 316
            K   +TC    F+C   + C+   WLCDGD DC DG+DE       C        + + 
Sbjct: 2   SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGSGSG 59

Query: 317 CIPDKWV-CDG 326
              +  V    
Sbjct: 60  STEELRVRLAS 70

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 64.1 bits (156), Expect = 5e-13
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 57  STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMC 115
            + F C    +C+P  W+CDG  DC DG DE       C        S  G    L    
Sbjct: 11  PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGSGSGSTEELRVRL 68

Query: 116 DDNPDCSD 123
             +     
Sbjct: 69  ASHLRKLR 76

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 229 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGN--CIQRIWLCD 285
            + F C    +C+P  W+CDG  DC DG DE      C  +     +G+    +      
Sbjct: 11  PSSFSCPGTHVCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGSGSGSTEELRVRLA 69

Query: 286 G 286
            
Sbjct: 70  S 70

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 129 SCKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS 185
             + +TC  S F C   + C+P  W CDG+ DC+D +DE        N   + +G  S
Sbjct: 3   KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGS 60

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 298 SCQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
             +   C    F+C     C+P++W+CDGD
Sbjct: 3   KLEGKTCGPSSFSCPGTHVCVPERWLCDGD 32

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 76.0 bits (186), Expect = 8e-16
 Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 7/143 (4%)

Query: 74  CDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR 133
                     V+E   +   C + E  C     +C+   ++CD + DC +G DEK C   
Sbjct: 37  IRKAGSLRHRVEE--LEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLP 94

Query: 134 TCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPA 191
           T    +F      + C             + +S         +          S      
Sbjct: 95  TKAGDKFIGDVCFDHCTKRR---PEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDE 151

Query: 192 PQINAHSPKISCACPEGLKLLPD 214
            +++  +          L + P 
Sbjct: 152 SEVSMPADGEYSFADHRLTIHPP 174

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 69.5 bits (169), Expect = 1e-13
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 4/100 (4%)

Query: 246 CDGQNDCPDGVDEKKCHETCRSDEFTCA--NGNCIQRIWLCDGDDDCKDGSDEKSCQPVK 303
                     V+E +   +C   E  C   +  CI ++++CDG +DC++G DEK C    
Sbjct: 37  IRKAGSLRHRVEELEDP-SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPT 95

Query: 304 CTAGQFTCQNLT-ACIPDKWVCDGDTVEKDSTCPNATPMN 342
               +F        C   +        E  S     TP+ 
Sbjct: 96  KAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIA 135

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 67.6 bits (164), Expect = 6e-13
 Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 11/137 (8%)

Query: 60  FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDD 117
            +C G    CI   +VCDG NDC +G DEK C       ++F        C        +
Sbjct: 60  HQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRR---PE 116

Query: 118 NPDCSDGSDEKSCK-----NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE-DPEMC 171
           +   +  S   +       +           +          DGE+  +D      P   
Sbjct: 117 HMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEE 176

Query: 172 NGVNHCAAVNGHCSHLC 188
           +G+      +G+     
Sbjct: 177 DGLGLVGEFDGYNFDRF 193

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 23/196 (11%)

Query: 115 CDDNPDCSDGSDEKSCKNRTCQAS-------EFRCG--NNRCIPNHWQCDGEFDCSDKSD 165
            DD  D        S ++R  +         E +CG  + +CI   + CDG  DC +  D
Sbjct: 28  LDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGED 87

Query: 166 ED----PEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEA 221
           E     P              HC+        +   S  I+        L   + + +E 
Sbjct: 88  EKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESET 147

Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRI 281
                  S        M     +            +E         D         +  I
Sbjct: 148 DEDESEVS--------MPADGEYSFADHRLTIHPPEEDGLGLVGEFD--GYNFDRFVGHI 197

Query: 282 WLCDGDDDCKDGSDEK 297
                ++ C +    +
Sbjct: 198 VHELSEEVCAEFIFHR 213

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 26/124 (20%), Positives = 39/124 (31%), Gaps = 6/124 (4%)

Query: 232 FRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC-HETCRSDEFTCANGN--CI-QRIWLCD 285
            +C G    CI   +VCDG NDC +G DEK C   T   D+F        C  +R     
Sbjct: 60  HQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMT 119

Query: 286 GDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSV 345
              +    +   +         +   +            DG+    D       P    +
Sbjct: 120 LAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADHRLTIHPPEEDGL 179

Query: 346 RIEG 349
            + G
Sbjct: 180 GLVG 183

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 12/84 (14%), Positives = 22/84 (26%), Gaps = 15/84 (17%)

Query: 245 VCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQPVKC 304
           + +  N     +   +     R D                      +   +E   +   C
Sbjct: 10  LIERTNKITTSISHVESLLDDRLDPKRI------------RKAGSLRHRVEE--LEDPSC 55

Query: 305 TAGQFTC-QNLTACIPDKWVCDGD 327
              +  C  +   CI   +VCDG 
Sbjct: 56  DEHEHQCGGDDPQCISKLFVCDGH 79

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 65.0 bits (159), Expect = 8e-14
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
             CQ  EF C N+RCI   W+CDG+ DC D SDE P +C+
Sbjct: 4   PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 62.7 bits (153), Expect = 5e-13
 Identities = 20/40 (50%), Positives = 22/40 (55%)

Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300
               C+  EF CAN  CIQ  W CDGD+DC D SDE    
Sbjct: 2   SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 17/41 (41%), Positives = 17/41 (41%)

Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
           GS P      F C    CI   W CDG NDC D  DE    
Sbjct: 1   GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 14/34 (41%), Positives = 14/34 (41%)

Query: 57 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
             F C    CI   W CDG NDC D  DE    
Sbjct: 8  PGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 91  KRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
              C   EF C +    C+   W CD + DC D SDE   
Sbjct: 3   PPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGD------TVEKDSTC 335
           P +C  G+F C N + CI ++W CDGD      + E  + C
Sbjct: 3   PPQCQPGEFACAN-SRCIQERWKCDGDNDCLDNSDEAPALC 42

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           + +C +++F+C + RCIP HW CDG+ DC D SDE    C
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300
           +C S +F C +G CI   W CDGD+DC D SDE    
Sbjct: 4   SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
           GS  C +ST F+C  G CIP  W CDG NDC D  DE   +
Sbjct: 1   GSHSC-SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 18/35 (51%), Positives = 20/35 (57%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
          +ST F+C  G CIP  W CDG NDC D  DE    
Sbjct: 6  SSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C   +F C S  G C+P  W CD + DC D SDE   
Sbjct: 5   CSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHA 39

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
             + C  D+F C N  CI  +W CD DDDC D SDE  C
Sbjct: 4   PAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 61.9 bits (151), Expect = 9e-13
 Identities = 19/39 (48%), Positives = 26/39 (66%)

Query: 129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
           S   + C+  +F+C N RCIP+ W+CD + DC D SDED
Sbjct: 2   SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 88  KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
               + C +++F CR+    C+P  W CD++ DC D SDE  C
Sbjct: 2   SGPAKECEKDQFQCRN--ERCIPSVWRCDEDDDCLDHSDEDDC 42

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK 91
          +K C     F+C    CIPS W CD  +DC D  DE  C K
Sbjct: 5  AKEC-EKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCPK 44

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 223 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           +K C     F+C    CIPS W CD  +DC D  DE  C
Sbjct: 5   AKEC-EKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 298 SCQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
           S    +C   QF C+N   CIP  W CD D
Sbjct: 2   SGPAKECEKDQFQCRN-ERCIPSVWRCDED 30

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 68.0 bits (165), Expect = 5e-13
 Identities = 28/188 (14%), Positives = 50/188 (26%), Gaps = 22/188 (11%)

Query: 88  KCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRC 147
           K +   C +  F C  +  EC+    +CD + DC +  DE       C  S  + GN   
Sbjct: 47  KIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD---VCDTSVVKAGNVFS 103

Query: 148 IPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPE 207
             + W       C  + D        +          + + L A         +      
Sbjct: 104 GTSTWH-----GCLAREDH--VTRITITASKRRKFFTARIWLRA--------LVESELER 148

Query: 208 GLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRS 267
             + +          +       +   T         VC          +  +CH    +
Sbjct: 149 HGENVTSSFNAKGYYNF-ASRRLILLPTDDHDDHLAVVCS---FNRGDNERAECHRVTEA 204

Query: 268 DEFTCANG 275
               CA+ 
Sbjct: 205 TLHQCADL 212

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 53.7 bits (128), Expect = 4e-08
 Identities = 26/194 (13%), Positives = 45/194 (23%), Gaps = 22/194 (11%)

Query: 253 PDGVDEKKCHETCRSDEFTCA--NGNCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFT 310
            D    K     C    F C      CI  + +CDG  DC +  DE    P  C      
Sbjct: 41  IDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE---DPDVCDTSVVK 97

Query: 311 CQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVC 370
             N+ +       C             A+                  F   + +      
Sbjct: 98  AGNVFSGTSTWHGCLAREDHVTRITITASKR-------------RKFFTARIWLRALVES 144

Query: 371 DKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
           +       +      K   +  ++          D  +  +C     +    N       
Sbjct: 145 ELERHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVC----SFNRGDNERAECHR 200

Query: 431 DECETPGSCSQICL 444
               T   C+ + +
Sbjct: 201 VTEATLHQCADLFV 214

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 61.8 bits (151), Expect = 8e-13
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           C + EF C +G CI   W CDG  DCKD SDE++C
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 18/32 (56%), Positives = 21/32 (65%)

Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
           C A EF C +  CI + W+CDG  DC DKSDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          PC  +  F C  G CI S+W CDG  DC D  DE+ C
Sbjct: 1  PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           PC  +  F C  G CI S+W CDG  DC D  DE+ C
Sbjct: 1   PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C   EF C S  GEC+  +W CD  PDC D SDE++C
Sbjct: 2   CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 64.1 bits (156), Expect = 3e-12
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 389 VDECAKDNGGC---LHKCVDLPVGYMCECNEGYKLSS--------NRHTCIDIDECET-P 436
           ++ECA  +         C +    Y C C+ GY+  S        + +TC D+DEC +  
Sbjct: 44  INECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQ 103

Query: 437 GSC--SQICLNEKGGFKCECVAGYIKDPHHPTQC 468
             C  S +C N  G + C C  G+      P   
Sbjct: 104 HQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 379 MQDEDPTKCG-VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
            ++E    C  VDEC+     C     C +    Y C C  G+K             CE
Sbjct: 85  FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 60.9 bits (148), Expect = 3e-12
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
             C+ DNG C   C +     +C C  GY L+ N   CI     
Sbjct: 2   KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 264 TCRSDEFTC-ANGNCIQRIWLCDGDDDCKDGSDEKSCQPV 302
            C +DEF C  +G CI   W CDGD DC D SDEKSC+ V
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
           C  +EF CR   G C+PL W CD + DC D SDEKSC+ 
Sbjct: 4   CHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCEG 41

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 134 TCQASEFRC-GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
            C   EF+C  +  CIP  W+CDG+ DC D SDE  + C GV
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCEGV 42

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 56 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          ++  F+C   G+CIP  W CDG  DC D  DEK C
Sbjct: 5  HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 228 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           ++  F+C   G+CIP  W CDG  DC D  DEK C
Sbjct: 5   HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGD 327
           P  C   +F C+    CIP +W CDGD
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGD 27

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 261 CHETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQP 301
               C S +F CA+G+ CI   + CDG  DC+D SDE  C  
Sbjct: 3   MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 130 CKNRTCQASEFRCGNNR-CIPNHWQCDGEFDCSDKSDE 166
                C +++F+C +   CI + ++CDG +DC D SDE
Sbjct: 2   AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 89  CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNR 133
                C   +F C      C+   + CD   DC D SDE  C  R
Sbjct: 2   AMVLNCTSAQFKCADG-SSCINSRYRCDGVYDCRDNSDEAGCPTR 45

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 56 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICG 95
           S  F+C  G  CI S + CDG  DC D  DE  C  R  G
Sbjct: 8  TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPTRPPG 48

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 228 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
            S  F+C  G  CI S + CDG  DC D  DE  C
Sbjct: 8   TSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
              + CT+ QF C + ++CI  ++ CDG 
Sbjct: 2   AMVLNCTSAQFKCADGSSCINSRYRCDGV 30

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
           C+ DNGGC   C +      C C  GY L  +  +C+  +  
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C+  NG C   C           ++ C+C  G  L  D   C      PC
Sbjct: 1   CSLDNGGCDQFCREERS------EVRCSCAHGYVLGDDSKSCVSTERFPC 44

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 130 CKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDP 168
            + +TC  S F C   + C+P  W CDG+ DC+D +DE  
Sbjct: 2   SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 41

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 262 HETCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSCQ 300
            +TC    F+C   + C+   WLCDGD DC DG+DE    
Sbjct: 4   GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 89  CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
            + + CG   F+C  +   CVP  W+CD + DC+DG+DE     
Sbjct: 2   SEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAG 44

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 57 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
           + F C    +C+P  W+CDG  DC DG DE    
Sbjct: 9  PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 229 STMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
            + F C    +C+P  W+CDG  DC DG DE   
Sbjct: 9   PSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
            +   C    F+C     C+P++W+CDGD
Sbjct: 2   SEGKTCGPSSFSCPGTHVCVPERWLCDGD 30

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCS- 440
           +     +      + G               C +GY        C DIDECE  PG C  
Sbjct: 61  NINGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRI-KGTQCEDIDECEVFPGVCKN 119

Query: 441 QICLNEKGGFKCECVAGYIKDP 462
            +C+N +G FKC+C +G   D 
Sbjct: 120 GLCVNTRGSFKCQCPSGMTLDA 141

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 25/94 (26%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE---------------- 432
           +DEC   +      C + P  ++CEC+    L   +  CI+  +                
Sbjct: 4   IDECE-SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCEINI 62

Query: 433 --------CETPGSCSQICLNEKGGFKCECVAGY 458
                   C +    +             C  GY
Sbjct: 63  NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGY 96

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI 428
           +DEC    G C +  CV+    + C+C  G  L +    C+
Sbjct: 107 IDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL 147

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 429 DIDECETPGSCSQICLNEKGGFKCECVAGYIKDP 462
           DIDECE+    + +C N  G F CEC +    DP
Sbjct: 3   DIDECESSPCINGVCKNSPGSFICECSSESTLDP 36

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
           C   E +C +   +C+P++W CD   DC  G DE++C N
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 265 CRSDEFTCANGN--CIQRIWLCDGDDDCKDGSDEKSC 299
           CR  E +C   +  CI   W CDG++DC  G DE++C
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 135 CQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDE 166
           C+  E  CG +  +CIP  W+CDGE DC    DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 60 FRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 89
            C      CIP +W CDG+NDC  G DE+ C
Sbjct: 6  ISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 232 FRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 261
             C      CIP +W CDG+NDC  G DE+ C
Sbjct: 6   ISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 54.0 bits (130), Expect = 6e-10
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 89  CQKRICGQEEFTCRSSP---GECVPLTWMCDDNPDCSDGSDEKSC 130
            +   C   +F C   P   GEC P  W+CD +PDC DG DE  C
Sbjct: 2   SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 52.5 bits (126), Expect = 2e-09
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 130 CKNRTCQASEFRC-----GNNRCIPNHWQCDGEFDCSDKSDE 166
            +  +C   +FRC      +  C P  W CDG  DC D  DE
Sbjct: 2   SEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 262 HETCRSDEFTCA-----NGNCIQRIWLCDGDDDCKDGSDEKSC 299
             +C   +F C+     +G C  + WLCDG  DC DG DE  C
Sbjct: 4   FGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 60 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 89
          FRC+      G C P  W+CDG  DC DG DE  C
Sbjct: 12 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 232 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 261
           FRC+      G C P  W+CDG  DC DG DE  C
Sbjct: 12  FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEK 447
           ++            C+D    + C+C  G++        +    C    G C+  CL E 
Sbjct: 14  LEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR-FCQREVSFLNCSLDNGGCTHYCLEEV 72

Query: 448 GGFKCECVAGY 458
           G  +C C  GY
Sbjct: 73  GWRRCSCAPGY 83

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
              C+ DNGGC H C++      C C  GYKL  +   C    + 
Sbjct: 54  FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 264 TCRSDEFTCA-----NGNCIQRIWLCDGDDDCKDGSDEKSC 299
            C   +F C+     +G C  + WLCDG  DC DG DE  C
Sbjct: 4   RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 94  CGQEEFTCRSSP---GECVPLTWMCDDNPDCSDGSDEKSC 130
           C   +F C   P   GEC P  W+CD +PDC DG DE  C
Sbjct: 5   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 132 NRTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDE 166
           +  C   +FRC      +  C P  W CDG  DC D  DE
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 222 GSKPCRNSTMFRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKCHET 264
           GS  C     FRC+      G C P  W+CDG  DC DG DE  C  +
Sbjct: 1   GSSRC-PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS 47

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 5/35 (14%)

Query: 60 FRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKC 89
          FRC+      G C P  W+CDG  DC DG DE  C
Sbjct: 10 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 57.3 bits (139), Expect = 4e-09
 Identities = 36/214 (16%), Positives = 78/214 (36%), Gaps = 16/214 (7%)

Query: 515 GMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTI 571
           G ++ +      I    I+ +G      +         L +    S   +++T+   N I
Sbjct: 26  GKVWITQHKANMISC--INLDGKITEYPLPTPDAKVMCLTIS---SDGEVWFTENAANKI 80

Query: 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631
                +G +++  + +    P  +   P +G +++++   N +I R   DG  R   + +
Sbjct: 81  GRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGN-RIGRITDDGKIREYELPN 138

Query: 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED-W 690
              +P+ +TL      L++ + + N I     +G      +  P   S P  I+   D  
Sbjct: 139 KGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKI--PTPASGPVGITKGNDDA 195

Query: 691 LYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEP 724
           L++ +     I +    T   +T          P
Sbjct: 196 LWFVEIIGNKIGRIT--TSGEITEFKIPTPNARP 227

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 25/187 (13%), Positives = 60/187 (32%), Gaps = 11/187 (5%)

Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVF-RTGMIFWSDISEKKIYKAPID-EGSERTV 540
           + I +I+ D  ++       K +            +++++     I +  I   G     
Sbjct: 120 NRIGRITDDG-KIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR--ITESGDITEF 176

Query: 541 VIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI 600
            I    +   G+        +++ +   N I      G + +  + +    P ++     
Sbjct: 177 KIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA- 234

Query: 601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS 660
              +++++WG   KI R   +       I      P+G+  D       W   + ++I  
Sbjct: 235 GIDLWFTEWG-ANKIGRLTSNNIIEEYPIQIKSAEPHGICFD---GETIWFAMECDKIGK 290

Query: 661 CDYNGGN 667
                 N
Sbjct: 291 LTLIKDN 297

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 51.6 bits (124), Expect = 5e-09
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 130 CKNRTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDED 167
            ++  C    F CGN  +C+P    C+G  DC +++DED
Sbjct: 2   SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 264 TCRSDEFTCANGN-CIQRIWLCDGDDDCKDGSDEKSC 299
            C    F C N   C+ ++  C+G DDC + +DE +C
Sbjct: 6   KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 89  CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
            Q   C    F C +   +C+P    C+   DC + +DE +C
Sbjct: 2   SQDVKCSLGYFPCGNI-TKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 50 RSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          +   C     F C     C+P    C+G +DC +  DE  C
Sbjct: 3  QDVKCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 225 PCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
            C     F C     C+P    C+G +DC +  DE  C
Sbjct: 6   KCSLGY-FPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 299 CQPVKCTAGQFTCQNLTACIPDKWVCDGD 327
            Q VKC+ G F C N+T C+P    C+G 
Sbjct: 2   SQDVKCSLGYFPCGNITKCLPQLLHCNGV 30

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 51.3 bits (123), Expect = 8e-09
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 392 CAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG 448
           C   NG C   C +      +C C EGY+L+ N+ +C           C ++ +++  
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF----PCGRVSVSQTS 55

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C   NG C   C  +        K+ C+C EG +L  +   C  A   PC
Sbjct: 2   CNIKNGRCEQFCKNSAD-----NKVVCSCTEGYRLAENQKSCEPAVPFPC 46

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 389 VDECAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDEC 433
              C  +NGGC   C D       C C+EGY L ++  +C    E 
Sbjct: 5   QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 171 CNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
            +    C   NG C   C           K SC C EG  LL D + C      PC
Sbjct: 2   KDDQLICVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEYPC 52

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 392 CAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDEC 433
           C  +NGGC   C D       C C+EGY L ++  +C    E 
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C   NG C   C           K SC C EG  LL D + C      PC
Sbjct: 2   CVNENGGCEQYCSDHT-----GTKRSCRCHEGYSLLADGVSCTPTVEYPC 46

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC--ETPGSCSQIC 443
            D+C      N G   KC D    Y C C EG+     ++  +   +      G C Q C
Sbjct: 42  GDQCETSPCQNQG---KCKDGLGEYTCTCLEGF---EGKNCELFTRKLCSLDNGDCDQFC 95

Query: 444 LNEKGGFKCECVAGY 458
             E+    C C  GY
Sbjct: 96  HEEQNSVVCSCARGY 110

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE--CETPGSC 439
             C+ DNG C   C +     +C C  GY L+ N   CI      C      
Sbjct: 82  KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPCGKQTLE 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 9e-08
 Identities = 73/510 (14%), Positives = 128/510 (25%), Gaps = 165/510 (32%)

Query: 241 PSTWVC-DGQNDCPDGVDEKKC--HETCRSDEFTCANGNCIQRIWL----CDGDDDC--- 290
           P+  V  DG      G   K     + C S +  C     I   WL    C+  +     
Sbjct: 149 PAKNVLIDGVLGS--G---KTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEM 201

Query: 291 ------------KDGSDEKSCQPVKCTAGQ------FTCQNLTAC--IPDKWVCDGDTVE 330
                          SD  S   ++  + Q         +    C  +    V +     
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWN 260

Query: 331 K-DSTCPN-ATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCG 388
             + +C    T     V       F+            T +   H    L  DE      
Sbjct: 261 AFNLSCKILLTTRFKQV-----TDFLSAA-------TTTHISLDHHSMTLTPDE-----V 303

Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK 447
                K     L  +  DLP   +   N                    P   S I     
Sbjct: 304 KSLLLK----YLDCRPQDLPR-EVLTTN--------------------PRRLSII----- 333

Query: 448 GGFKCECVAGYIKD-PHHPTQCKAAEGHASLLFARKHDIRKISLDH---HEMTAIVNSTK 503
                   A  I+D        K       +   +   I + SL+     E   + +   
Sbjct: 334 --------AESIRDGLATWDNWK------HVNCDKLTTIIESSLNVLEPAEYRKMFDRL- 378

Query: 504 SATAIDFVFRTG--------MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD 555
                  VF            + W D+ +               V      ++ +     
Sbjct: 379 ------SVFPPSAHIPTILLSLIWFDVIK---------SDVMVVVNKLHKYSLVEK---Q 420

Query: 556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL----DEPRSLALNPIDGWMYWSDWGQ 611
              S I     +         E  + + +V  Y      +   L    +D + Y    G 
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGH 479

Query: 612 N-AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGN-- 667
           +   IE        R             + LD   R   +++ K+ ++ ++ + +G    
Sbjct: 480 HLKNIEHPERMTLFRM------------VFLDF--R---FLEQKIRHDSTAWNASGSILN 522

Query: 668 --RRLVLYSPQ-TLSHPFS---ISTFEDWL 691
             ++L  Y P    + P     ++   D+L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFL 552

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQICLNEK 447
            D+C         KC D    Y C C EG+              C    G C Q C  E+
Sbjct: 42  GDQCETSPCQNQGKCKDGLGEYTCTCLEGF--EGKNCELFTRKLCSLDNGDCDQFCHEEQ 99

Query: 448 GGFKCECVAGY 458
               C C  GY
Sbjct: 100 NSVVCSCARGY 110

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--ICLNEK 447
             C+ DNG C   C +     +C C  GY L+ N   CI          C +  +   ++
Sbjct: 82  KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY----PCGKQTLERRKR 137

Query: 448 GGFKCECVAGYIKDPHHPT 466
              +    +G   D     
Sbjct: 138 SVAQATSSSGEAPDSITWK 156

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 19/186 (10%)

Query: 530 APIDEGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEGTMRKVLVRS 587
            PI+    + +      T  + LA         I+ T+     I     +G  +  +  +
Sbjct: 15  KPIELAPAKIITSFPVNTFLENLASA---PDGTIFVTNHEVGEIVSITPDGNQQ--IHAT 69

Query: 588 YLDEPRSLALNPIDGWMYWSDWGQNA--KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ 645
              +   LA    +G +  + W  ++   +     DG+   ++ + D  + NG+T     
Sbjct: 70  VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPL-SD 127

Query: 646 RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFS--------ISTFEDWLYWSDWQ 697
            +    D+    I   D    +  + L  P                +  F ++LY S+ +
Sbjct: 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTE 187

Query: 698 QKAIYK 703
           +  + +
Sbjct: 188 KMLLLR 193

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 8/47 (17%)

Query: 389 VDECAKDNGG--------CLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
           +DECA  +          C H C +   GY C C  GY+L  +RH+C
Sbjct: 4   LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 9/41 (21%)

Query: 428 IDIDECETP---------GSCSQICLNEKGGFKCECVAGYI 459
           +D+DEC +            C  +C N  GG+ C C  GY 
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 32/194 (16%), Positives = 69/194 (35%), Gaps = 16/194 (8%)

Query: 515 GMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTI 571
           G ++++     KI    +D  G  +   +         L V    S   I++T+   N I
Sbjct: 31  GKVWFTQHKANKISS--LDQSGRIKEFEVPTPDAKVMCLIVS---SLGDIWFTENGANKI 85

Query: 572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS 631
              + +G   +  +      P  +     +G ++++      +I +   DG+     + +
Sbjct: 86  GKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN-GDRIGKLTADGTIYEYDLPN 143

Query: 632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED 689
              +P  +TL      L++ + + N I      G      L  P   + P  I T   + 
Sbjct: 144 KGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPL--PTNAAAPVGI-TSGNDG 199

Query: 690 WLYWSDWQQKAIYK 703
            L++ +     I +
Sbjct: 200 ALWFVEIMGNKIGR 213

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 30/208 (14%), Positives = 71/208 (34%), Gaps = 19/208 (9%)

Query: 483 HDIRKISLDHHEMTAIVNSTKSAT---AIDFVFRTGMIFWSDISEKKIYKAPID-EGSER 538
           + I K+S         +    S             G I+++ ++  +I K  +  +G+  
Sbjct: 83  NKIGKLSKKGGFTEYPLPQPDSGPYGITEG---LNGDIWFTQLNGDRIGK--LTADGTIY 137

Query: 539 TVVIEEDKTIADGLAVDWIYS--HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLA 596
              +    +    + +    S   +++T+   N+I      G + +  + +    P  + 
Sbjct: 138 EYDLPNKGSYPAFITLG---SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGIT 194

Query: 597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN 656
               DG +++ +   N KI R    G      I +    P+ +T       +++ +   N
Sbjct: 195 SGN-DGALWFVEIMGN-KIGRITTTGEISEYDIPTPNARPHAITAG-KNSEIWFTEWGAN 251

Query: 657 EISSCDYNGGNRRLVLYSPQTLSHPFSI 684
           +I     +   +   L      + P  I
Sbjct: 252 QIGRITNDNTIQEYQL--QTENAEPHGI 277

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEK- 447
            D+C  +       C D    Y C C  G+     ++  +D       G C Q C     
Sbjct: 48  GDQCEPNPCLNGGLCKDDINSYECWCQVGF---EGKNCELDATCNIKNGRCKQFCKTGAD 104

Query: 448 GGFKCECVAGY 458
               C C  GY
Sbjct: 105 SKVLCSCTTGY 115

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 20/174 (11%), Positives = 43/174 (24%), Gaps = 27/174 (15%)

Query: 271 TCANGNCIQRIWLCDGDDDCKDGSDEKSC--------QPVKCTAGQFTCQNLTACIPDKW 322
            C  G        C+  ++C   +   +C         P       + C  +      + 
Sbjct: 28  MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED 87

Query: 323 VCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDE 382
            C  D  +  +   +   +   +                     +A C          ++
Sbjct: 88  TCVLDVCQYXNCGESGECIVEYLSEIQ-----------------SAGCSCAIGXVPNPED 130

Query: 383 DPTKCGVDECAKD--NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE 434
           +       E A           C ++   Y C+C EG+      + C+      
Sbjct: 131 EXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHHH 184

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 2/91 (2%)

Query: 381 DEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE--CETPGS 438
           +E   +     C +      +        Y C C EGY L  +           C   G 
Sbjct: 45  NECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGE 104

Query: 439 CSQICLNEKGGFKCECVAGYIKDPHHPTQCK 469
           C    L+E     C C  G + +P     C 
Sbjct: 105 CIVEYLSEIQSAGCSCAIGXVPNPEDEXXCT 135

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 16/181 (8%)

Query: 287 DDDCKDGSDEKSCQPVKC--TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSS 344
           + +    + +  C   +    +  F C     C         +T E+ + C   T   + 
Sbjct: 1   EAEASAVTVDTICXNGQLVQMSNHFXCM----CNEGLVHLSENTCEEXNECXXETLGXAC 56

Query: 345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV 404
                 +    P        V    C       L +D             ++G C+ + +
Sbjct: 57  GEFGQCIENPDPA------QVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYL 110

Query: 405 DLPVGYMCECNEGYKLSSNRHT-CIDIDECET---PGSCSQICLNEKGGFKCECVAGYIK 460
                  C C  G   +      C    E        + +++C N +G + C+C+ G+  
Sbjct: 111 SEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTF 170

Query: 461 D 461
           D
Sbjct: 171 D 171

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)

Query: 389 VDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTC-IDIDECETPGSCSQ--IC 443
           VDEC+     C H  KC++    + C+C +GY        C ID++EC     C     C
Sbjct: 5   VDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECV-SNPCQNDATC 59

Query: 444 LNEKGGFKCECVAGY 458
           L++ G F+C C+ GY
Sbjct: 60  LDQIGEFQCICMPGY 74

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 389 VDECAKD---NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQ--IC 443
           V+EC  +   N      C+D    + C C  GY      H  ++ DEC     C     C
Sbjct: 45  VNECVSNPCQNDA---TCLDQIGEFQCICMPGY---EGVHCEVNTDECA-SSPCLHNGRC 97

Query: 444 LNEKGGFKCECVAGY 458
           L++   F+CEC  G+
Sbjct: 98  LDKINEFQCECPTGF 112

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 22/166 (13%), Positives = 50/166 (30%), Gaps = 13/166 (7%)

Query: 510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD---WIYSHIYWTDA 566
              R G +F  D+ E  I+K   +    +   +         + +     ++        
Sbjct: 51  NFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN-PAAIKIHKDGRLFVCYLGDFK 109

Query: 567 HKNTIELANFEGTMRKVLVRSYLDEPRS--LALNPIDGWMYWSDWGQNAKIERAGM---- 620
               I  A   G   + ++           +  +   G  Y++D+   +     G+    
Sbjct: 110 STGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVS 168

Query: 621 -DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG 665
            D      +I  +I   NG+ L   ++ L+  +   N +       
Sbjct: 169 PDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALED 213

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 23/102 (22%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 369 VCDKHPDCPLMQDEDPTKCG------VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSS 422
            C       + +D + TK         D+CA         C D    Y+C C   ++   
Sbjct: 21  QCSFEEAREIFKDAERTKLFWISYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR- 79

Query: 423 NRHTC-IDIDECETP----GSCSQICLNEKG-GFKCECVAGY 458
               C    D+        G C Q C +  G    C C  GY
Sbjct: 80  ---NCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGY 118

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 389 VDECAK---DNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE 434
            D+      +NGGC   C D       C C+EGY L ++    +      
Sbjct: 85  KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADG---VSCTPTV 131

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554

 Score = 48.4 bits (114), Expect = 7e-06
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 225 PCRNSTMFRCTGGMCIPST--WVCDGQ-NDCPDGVDEKKC-HETCRSDEFTCA-NGNCIQ 279
           PC++   +R    +        +C G   D         C  +     +F C   G C++
Sbjct: 22  PCQD-KKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLK 80

Query: 280 RIWLCDGDDDCKDGSDEKSCQPVKC 304
           R  +C+GD DC DGSDE  C+ V+ 
Sbjct: 81  RHLVCNGDQDCLDGSDEDDCEDVRA 105

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554

 Score = 41.9 bits (97), Expect = 8e-04
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 5/123 (4%)

Query: 36  GVDYDTFTSPTVYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQKRIC 94
           G  +D  +  +     +  +    F+C   G C+    VC+G  DC DG DE  C+    
Sbjct: 46  GDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRA 105

Query: 95  GQEEFTCRSSPG--ECVPLTWMCDDNPDCSDGSDEKSC--KNRTCQASEFRCGNNRCIPN 150
             E+ +        +   L +      D     D      +  T    E+R         
Sbjct: 106 IDEDCSQYEPIPGSQKAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCE 165

Query: 151 HWQ 153
              
Sbjct: 166 RLY 168

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} Length = 430

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 16/155 (10%), Positives = 41/155 (26%), Gaps = 5/155 (3%)

Query: 483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI---DEGSERT 539
           H  R I  +   ++ + +       I +      +  ++               E   + 
Sbjct: 159 HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKV 218

Query: 540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALN 598
           +         +G     I   +Y+   +   +   +F       L           +  +
Sbjct: 219 ITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFH 278

Query: 599 PIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI 633
           P   + Y     Q+  I R+  D   + +     +
Sbjct: 279 PSGNYAYIVVVNQH-YILRSDYDWKTKRLTTPYIV 312

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 383 DPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC--ETPGSCS 440
             + C    C   + G    C D   GY C C+ GY      +  +  +EC  E    C 
Sbjct: 4   GGSPCISQPC--LHNG---SCQDSIWGYTCTCSPGY---EGSNCELAKNECHPERTDGCQ 55

Query: 441 QICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH 474
             CL  +  + C C  GY     H       +  
Sbjct: 56  HFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA 89

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 17/101 (16%), Positives = 26/101 (25%), Gaps = 7/101 (6%)

Query: 64  GGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSD 123
           G  CI     C     C D +    C     G E   C  +  EC P       +  C  
Sbjct: 5   GSPCISQ--PCLHNGSCQDSIWGYTCTCSP-GYEGSNCELAKNECHPERTDGCQH-FCLP 60

Query: 124 GSDEKSC---KNRTCQASEFRCGNNRCIPNHWQCDGEFDCS 161
           G +  +C   +         +C  +           +    
Sbjct: 61  GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAPD 101

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 236 GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDG-DDDCKDGS 294
           G  CI     C     C D +    C  +   +   C            DG    C  G 
Sbjct: 5   GSPCISQ--PCLHNGSCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQ 62

Query: 295 DEKSCQPVKCTAGQFTCQNLTACIPDKWVCDG 326
           +  +C    C  G    ++   C+P      G
Sbjct: 63  ESYTCS---CAQGYRLGEDHKQCVPHDQCACG 91

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 385 TKCGVDECA-KDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
               ++EC    +  C H C +   GY C C   Y L  +   C  
Sbjct: 113 VATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 25/192 (13%), Positives = 65/192 (33%), Gaps = 33/192 (17%)

Query: 509 DFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD-----GLAVDWIYSHIYW 563
           DF      +  +     +I +  ID  + +  VI + +         G   D   ++  +
Sbjct: 30  DFYIVAPEVEVNGKPAGEILR--IDLKTGKKTVICKPEVNGYGGIPAGCQCD-RDANQLF 86

Query: 564 TDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPI----DGWMYWSD--------WGQ 611
               +  + +   +GT  ++  +   +  R    N      +G ++ +            
Sbjct: 87  VADMRLGLLVVQTDGTFEEIAKKDS-EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT 145

Query: 612 NAKIERAG----MDGSHRNMVIVSDIKWPNGLTL----DLVQRRLYWVDAKLNEISSCDY 663
            +  E+ G         + + + +  ++PNG+ +    D    +L   +    ++ S D 
Sbjct: 146 RSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDI 205

Query: 664 NG----GNRRLV 671
            G     N+++ 
Sbjct: 206 KGPAKIENKKVW 217

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 25/119 (21%)

Query: 375 DCPLMQDEDPTKCG-VDECAKDNGGC-----LHKCVDLPVGYMCE-CNEGYK-------- 419
            CP+    + T C  +DECA     C     + +CV+   G+ C  C   Y+        
Sbjct: 29  FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVG 88

Query: 420 ---LSSNRHTCIDIDECETP-------GSCSQICLNEKGGFKCECVAGYIKDPHHPTQC 468
                + +  C   + C+           C  +       +KCEC  GY  D     + 
Sbjct: 89  LEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGED 147

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 170

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 388 GVDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
            +DEC    G    C H C +   G+ C C  GY L  N+ TC +
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 36/184 (19%)

Query: 513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE 572
               + +SD+ + + +     +  + +  +       +G  ++    H+         +E
Sbjct: 38  ARSAVIFSDVRQNRTWA--WSDDGQLSPEMHPSH-HQNGHCLN-KQGHLIACSHGLRRLE 93

Query: 573 LANFEGTMRKVLVRSYLDEPRS----LALNPIDGWMYWSD---------WGQNAKIERAG 619
                G   + +  S+  +  +    + L P DG +++SD          G   ++E  G
Sbjct: 94  RQREPGGEWESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPG 152

Query: 620 M-------DGSHRNMVIVSDIKWPNGLTL--DLVQRRLYWVDAKLNEISSCDYNG----G 666
                   DG+      + D   PNGL          L   D   N       N      
Sbjct: 153 RWVFRLAPDGTLS--APIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNARGETE 207

Query: 667 NRRL 670
            + +
Sbjct: 208 YQGV 211

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 381 DEDPTKCGVDECAKD---NGG----CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
            ++        C  +   NGG          D  +GY+C+C  G+   +  H   +I+EC
Sbjct: 44  SDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGF---NGIHCQHNINEC 100

Query: 434 ETPGSCSQ--ICLNEKGGFKCECVAGY 458
           E    C    IC +    + CEC   +
Sbjct: 101 E-VEPCKNGGICTDLVANYSCECPGEF 126

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 15/130 (11%)

Query: 44  SPTVYWRSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRS 103
           S      SK    ++  +     C                 DE+     + G+       
Sbjct: 41  SAQAKALSKHQDFNSAVQLVENFC------------RNPDGDEEGVWCYVAGKPGDFGYC 88

Query: 104 SPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPN-HWQCDGEFDCSD 162
               C     + ++  D  D   +++ +  T  +      N     +    C        
Sbjct: 89  DLNYCEE--AVEEETGDGLDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEK 146

Query: 163 KSDEDPEMCN 172
           KS ED     
Sbjct: 147 KSLEDKTERE 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	734
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.95
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.94
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.91
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.84
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.83
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.82
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.82
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.81
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.8
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.78
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.78
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.78
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.75
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.7
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.68
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.67
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.66
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.61
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.61
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.57
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.55
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.54
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.49
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.45
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.44
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.43
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.43
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.43
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.39
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.38
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.38
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.36
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.36
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.36
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.34
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.32
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.31
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.31
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.31
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.3
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.3
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.29
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.28
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.27
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.26
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.26
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.25
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.24
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.23
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.23
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.22
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.21
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.2
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.19
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.19
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.19
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.14
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.14
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.13
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.11
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.11
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.1
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.1
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.09
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.07
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.06
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.06
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.04
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.03
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.03
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.01
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.01
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.01
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.0
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.98
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.98
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.97
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.96
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.96
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.96
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.96
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.95
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.94
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.94
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.94
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	98.94
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	98.94
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.92
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.92
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.91
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.9
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	98.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.88
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.88
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	98.87
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.87
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	98.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.84
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.83
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.82
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.82
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.82
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.81
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.81
2vh0_B	134	Activated factor XA light chain; serine protease,	98.81
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.8
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.79
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.78
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.76
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.75
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.73
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.73
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.73
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.72
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.72
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.7
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.69
2bou_A	143	EGF-like module containing mucin-like hormone rece	98.69
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.69
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.69
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.68
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	98.65
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.63
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.62
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.62
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.61
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.61
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.59
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	98.59
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.59
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.57
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	98.56
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	98.54
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.54
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.53
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.52
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	98.52
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.52
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.49
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.49
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.48
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	98.46
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.45
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.44
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	98.39
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.38
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	98.38
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	98.38
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	98.37
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.37
2vh0_B	134	Activated factor XA light chain; serine protease,	98.37
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.36
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.35
1aut_L	114	Activated protein C; serine proteinase, plasma cal	98.35
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.35
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	98.34
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.33
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	98.31
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	98.3
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.29
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	98.29
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	98.29
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.28
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	98.27
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.25
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	98.23
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	98.23
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.2
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.2
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.13
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.11
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.1
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.09
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.09
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.08
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.07
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.07
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.06
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	98.05
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.03
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.96
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	97.96
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.95
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.93
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.92
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.88
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.87
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	97.87
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.85
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.85
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.84
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.83
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.82
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.82
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.82
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	97.81
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.8
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.78
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	97.78
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.78
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	97.77
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	97.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.76
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.76
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	97.75
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.73
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.72
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.67
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	97.66
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.65
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	97.65
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.64
3ow8_A	321	WD repeat-containing protein 61; structural genomi	97.63
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.63
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	97.62
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.62
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.61
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.58
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.58
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.55
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.55
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.55
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.54
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.54
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	97.53
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	97.52
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.52
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.51
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.51
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.51
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.5
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.5
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.49
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.45
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.44
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.41
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.38
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	97.36
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.36
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.36
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.34
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.33
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.33
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.33
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.33
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.32
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.32
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.29
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.26
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.24
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.23
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.2
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.17
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.16
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.15
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.14
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.14
1szb_A	170	Mannose binding lectin-associated serine protease-	97.13
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.08
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	97.07
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	97.06
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.03
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.03
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.03
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.02
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.99
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	96.98
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.98
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	96.97
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	96.94
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.91
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	96.89
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	96.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.8
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.79
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.78
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.77
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.76
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.75
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.75
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.75
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	96.74
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	96.74
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	96.73
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.72
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	96.68
1szb_A	170	Mannose binding lectin-associated serine protease-	96.66
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	96.65
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	96.64
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.64
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.62
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.62
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.6
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	96.59
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	96.58
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.57
2pm7_B	297	Protein transport protein SEC13, protein transport	96.52
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.51
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.51
3jro_A	753	Fusion protein of protein transport protein SEC13	96.49
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.42
3jro_A	753	Fusion protein of protein transport protein SEC13	96.42
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.4
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.4
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.4
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.38
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.37
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	96.36
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.36
1nzi_A	159	Complement C1S component; calcium, innate immunity	96.34
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.32
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	96.31
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.3
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.26
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.23
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.23
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.22
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.21
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.17
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.13
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.13
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	96.09
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	96.08
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	96.07
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	95.95
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	95.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	95.91
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.89
1nzi_A	159	Complement C1S component; calcium, innate immunity	95.87
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	95.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.83
2pm7_B	297	Protein transport protein SEC13, protein transport	95.74
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.72
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.62
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	95.52
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	95.5
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	95.3
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.13
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	94.98
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	94.95
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	94.9
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.9
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	94.82
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	94.81
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	94.69
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	94.53
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	94.48
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.46
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	94.46
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	94.38
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	94.23
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	94.21
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	94.21
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	94.19
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	93.91
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	93.79
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	93.76
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	93.66
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	93.64
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	93.24
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	93.19
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.1
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	93.09
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	93.0
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	92.9
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	92.85
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	92.78
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	92.7
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	92.67
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	92.39
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	92.31
3ott_A	758	Two-component system sensor histidine kinase; beta	91.66
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	91.55
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.25
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	90.89
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	90.41
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	90.2
3ott_A	758	Two-component system sensor histidine kinase; beta	90.07
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	89.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	89.81
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	89.71
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	89.58
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	89.55
1ob1_C	99	Major merozoite surface protein; immune system, im	89.48
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	88.4
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	88.23
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	87.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	87.7
3f6k_A	685	Sortilin; protein sorting receptor, 10-bladed beta	87.45
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	86.75
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	86.65
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	86.54
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	85.25
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	84.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	83.87
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	83.85
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	82.67
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	82.19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	81.1
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	81.06
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	81.0

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=6.7e-111  Score=987.66  Aligned_cols=611  Identities=41%  Similarity=0.909  Sum_probs=345.1

Q ss_pred             CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccc--cccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc
Q psy8875          50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE  127 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~--C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de  127 (734)
                      ...+|+ +++|+|.+|+||+..|+|||..||.|||||.+  |...+|.+.+|+|.+++++|||..|+|||..||.||+||
T Consensus        20 ~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE   98 (791)
T 3m0c_C           20 VGDRCE-RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE   98 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCcC-cCccCCCCCCEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCccc
Confidence            366898 89999999999999999999999999999997  887899999999997557999999999999999999999


Q ss_pred             CCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCC
Q psy8875         128 KSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPE  207 (734)
Q Consensus       128 ~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~  207 (734)
                      .+|...+|...+|+|.+|+||+..|+|||..||.||+||.+        |.                     ..      
T Consensus        99 ~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~--------C~---------------------~~------  143 (791)
T 3m0c_C           99 QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--------CP---------------------VL------  143 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccCccccCCeEECCCCCEECHHHcCCCcccCCCCccccc--------cc---------------------cc------
Confidence            99988899999999999999999999999999999999987        72                     11      


Q ss_pred             CCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCC--CCC---------CCCCCCceecCCCC
Q psy8875         208 GLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK--KCH---------ETCRSDEFTCANGN  276 (734)
Q Consensus       208 G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~--~C~---------~~C~~~~~~C~~g~  276 (734)
                                       +|. .++|+|.+|+||+..|+|||..||.||+||.  +|.         ..|...+|+|.+|.
T Consensus       144 -----------------~C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~  205 (791)
T 3m0c_C          144 -----------------TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGE  205 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------ccc-cceeccCCCccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccCCc
Confidence                             566 5899999999999999999999999999996  673         36889999999999


Q ss_pred             eecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCC----CCCCCCCCCCCcccccccc
Q psy8875         277 CIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS----TCPNATPMNSSVRIEGAVA  352 (734)
Q Consensus       277 Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~----~C~~~~~c~~~~~~~C~~~  352 (734)
                      ||+..|+|||..||.||+||.+|....|.+++|+|.+ +.||+..|+|||..||.|+    .|.....|..+.+|.|   
T Consensus       206 Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~~C~~~~~~~C---  281 (791)
T 3m0c_C          206 CIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC---  281 (791)
T ss_dssp             --------------------------------------------------------------------CCSTTCCCC---
T ss_pred             eeccccccCCCCCCCCCCCCCCccccccCCCcceecC-CceEecceecCChhccccccccCcccccccccCCCcccc---
Confidence            9999999999999999999999998889999999998 7999999999999999998    6776666766778999   


Q ss_pred             ccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875         353 FIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE  432 (734)
Q Consensus       353 ~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e  432 (734)
                          .  ++.|++...+|++..+|++|++|....|+++||...++.|+|.|++++++|+|.|++||+| .++++|+++||
T Consensus       282 ----~--~G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l-~~g~~C~dide  354 (791)
T 3m0c_C          282 ----H--SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDE  354 (791)
T ss_dssp             ----T--TSCCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTTTGGGGCSSEEEECSBSEEEECCTTCEE-ETTTEEECCCC
T ss_pred             ----C--CCcccccccccCCccccccccCccccccccccccccccCccccccCCCCCcccCCCCCCcc-CCCCccccCcc
Confidence                4  5789999999999999999999998889999999888899999999999999999999999 58999999999


Q ss_pred             cCCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeec
Q psy8875         433 CETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVF  512 (734)
Q Consensus       433 C~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~  512 (734)
                      |+.++.|+++|+|+.|+|+|.|++||.+..++++ |++++..++|||++.+.|+++.+++..+..++..+..++||+||+
T Consensus       355 C~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~-C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~  433 (791)
T 3m0c_C          355 CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEV  433 (791)
T ss_dssp             CSSSSSCTTTCCBCSSCBCCCCCSSEECCSSCCC-CEETTSCCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEET
T ss_pred             cCCCCCCCCeeecCCCCceeecCCCCEeCCCCce-eeecccccccccccccceeEeeccCCcceeeecCCCceEEEeecc
Confidence            9988999999999999999999999999888777 999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEeCCCcEEEEecCCC---CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875         513 RTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL  589 (734)
Q Consensus       513 ~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l  589 (734)
                      ..++|||+|...++|+++.+++.   ...++++...+..|.||||||++++|||+|...++|++++++|+.+++|+...+
T Consensus       434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l  513 (791)
T 3m0c_C          434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG  513 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred             cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCC
Confidence            99999999999999999999843   234566666889999999999999999999999999999999999999998889


Q ss_pred             CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR  669 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~  669 (734)
                      ..|++|||||..|+|||+||+..++|++++|+|+.+++++...+.+|+|||||+.+++|||+|++.++|++++++|+.++
T Consensus       514 ~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~  593 (791)
T 3m0c_C          514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK  593 (791)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceE
Confidence            99999999999999999999877899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       670 ~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +++.....+.+|++|++++++||||||.+++|+++++++|+.+++|...  +.+|++|+
T Consensus       594 ~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~--l~~P~~i~  650 (791)
T 3m0c_C          594 TILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMV  650 (791)
T ss_dssp             EEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECS--CSCCCCEE
T ss_pred             EEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecC--CCCceeEe
Confidence            9987666789999999999999999999999999999999999888643  55666553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=9.9e-108  Score=958.07  Aligned_cols=610  Identities=41%  Similarity=0.911  Sum_probs=515.5

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccc--cccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKK--CQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK  128 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~--C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~  128 (734)
                      ..+|. +++|+|.+|+||+..|+|||..||.|||||.+  |...+|.+.+|+|.+++++|||..|+|||..||.||+||.
T Consensus         3 ~~~C~-~~~f~C~~g~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~   81 (699)
T 1n7d_A            3 GDRCE-RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ   81 (699)
T ss_dssp             ------------------------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTT
T ss_pred             cCCCC-ccceeCCCCcEEcHHhcCCCcccCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCcccC
Confidence            45788 89999999999999999999999999999998  9888999999999986568999999999999999999999


Q ss_pred             CCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCC
Q psy8875         129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEG  208 (734)
Q Consensus       129 ~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G  208 (734)
                      +|....|...+|+|.+|+||+..|+|||..||.|||||.+        |.                     ..       
T Consensus        82 ~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~--------C~---------------------~~-------  125 (699)
T 1n7d_A           82 GCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--------CP---------------------VL-------  125 (699)
T ss_dssp             SCSSCCCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSS--------CC---------------------CC-------
T ss_pred             cccccccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCC--------cC---------------------cc-------
Confidence            9988899999999999999999999999999999999987        62                     11       


Q ss_pred             CccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCC--CCCCC---------CCCCCceecCCCCe
Q psy8875         209 LKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE--KKCHE---------TCRSDEFTCANGNC  277 (734)
Q Consensus       209 ~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de--~~C~~---------~C~~~~~~C~~g~C  277 (734)
                                      +|. ..+|+|.+|+||+..|+|||..||.||+||  .+|..         .|.+++|+|.+|.|
T Consensus       126 ----------------~C~-~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~C  188 (699)
T 1n7d_A          126 ----------------TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGEC  188 (699)
T ss_dssp             ----------------CCC-SSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCC
T ss_pred             ----------------ccC-ccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCce
Confidence                            566 589999999999999999999999999999  89952         79999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCC----CCCCCCCCCCCccccccccc
Q psy8875         278 IQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDS----TCPNATPMNSSVRIEGAVAF  353 (734)
Q Consensus       278 i~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~----~C~~~~~c~~~~~~~C~~~~  353 (734)
                      |+.+|+|||+.||.|||||.+|....|.+.+|+|.+ ++||+..|+|||+.||.|+    .|.....|..+.+|.|    
T Consensus       189 i~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~C~~~~~C~~~~~~~C----  263 (699)
T 1n7d_A          189 IHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKC----  263 (699)
T ss_dssp             CSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSS-SCEEETTCCSSSCCCSSSSCSSSSTTCCCCCCSTTCCCC----
T ss_pred             EechhccCCCCCCCCCcccccCCCcccCCCcEecCC-CceeeeecccCCCCCCCCCCccCCCCCCCcccCCCceec----
Confidence            999999999999999999999998899999999997 8999999999999999999    6776667766678999    


Q ss_pred             cCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         354 IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       354 ~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                         .  ++.|++...+|++..+|++|+||....|+++||...++.|++.|.+++++|+|.|++||+| .++++|+++|||
T Consensus       264 ---~--~g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~-~~~~~C~dideC  337 (699)
T 1n7d_A          264 ---H--SGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDEC  337 (699)
T ss_dssp             ---T--TSCCCCSSCCSCSSCCSSSSCSCCCSSCCCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCC-CSSSCCCCCCCC
T ss_pred             ---C--CCcEeCCcccccccceecCcccccccccccccccccccCcCCCcccCCCCcEEeCCCCeEc-CCCCcccCcccc
Confidence               3  6789999999999999999999998889999999888899999999999999999999999 689999999999


Q ss_pred             CCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeecc
Q psy8875         434 ETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFR  513 (734)
Q Consensus       434 ~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~  513 (734)
                      +.+++|+|+|+|+.|+|+|.|++||.+..++++ |++++..++|||++.+.|+++.+++..+..++..+..|.+|+|++.
T Consensus       338 ~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~-C~~~~~~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~  416 (699)
T 1n7d_A          338 QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA  416 (699)
T ss_dssp             SSSSSCTTTCCBCSSCBCCCCCSSCBCCSSCCC-CBCCSSCCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETT
T ss_pred             CCCCccccccccCCCCeeeeeecccccCCCCCc-ccccccceeEEecCccceEEEeCCCCcceeeeccCcceEEEccccc
Confidence            988899999999999999999999999988777 9999889999999999999999999988888888999999999999


Q ss_pred             CCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCC
Q psy8875         514 TGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD  590 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~  590 (734)
                      .++|||+|...++|+++++++   +...+.++...+..|.||||||.+++|||+|...++|.+++++|..+++++...+.
T Consensus       417 ~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~  496 (699)
T 1n7d_A          417 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGS  496 (699)
T ss_dssp             TTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSC
T ss_pred             cCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCC
Confidence            999999999999999999984   13344444456788999999999999999999999999999999999888877889


Q ss_pred             CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEE
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRL  670 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~  670 (734)
                      .|++|||||..|+|||++++..++|++++|+|+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++
T Consensus       497 ~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~  576 (699)
T 1n7d_A          497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT  576 (699)
T ss_dssp             CCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE
T ss_pred             CcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE
Confidence            99999999999999999988668999999999999888878899999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         671 VLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      ++.....+.+|+||++++++|||+||++++|+++++.+|+.+++|...  +.+|++|+
T Consensus       577 ~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~i~~~--~~~P~~i~  632 (699)
T 1n7d_A          577 ILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMV  632 (699)
T ss_dssp             ECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEECCCTT--CSSCCCCC
T ss_pred             EEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEEeecC--CCCCcEEE
Confidence            886555688999999999999999999999999999999988887543  55666664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=2.9e-83  Score=753.09  Aligned_cols=571  Identities=30%  Similarity=0.622  Sum_probs=275.9

Q ss_pred             CcCCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCC
Q psy8875          48 YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGS  125 (734)
Q Consensus        48 c~~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~  125 (734)
                      | ...+|+ +.+|+|.+  |+|||..|+|||..||.|||||.+|...+|.+.+|+|.+  |+||+..|+|||..||.||+
T Consensus        60 C-~~~~C~-~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~dC~dgs  135 (791)
T 3m0c_C           60 C-LSVTCK-SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD--GKCISRQFVCDSDRDCLDGS  135 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             c-ccCccC-cCccccCCCCCCEeeccccCCCCcCcCCCcccCCccCccccCCeEECCC--CCEECHHHcCCCcccCCCCc
Confidence            7 567898 89999998  899999999999999999999999988899999999987  68999999999999999999


Q ss_pred             CcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccC
Q psy8875         126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCAC  205 (734)
Q Consensus       126 de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C  205 (734)
                      ||.+|...+|.+.+|+|.+|+||+..|+|||..||.||+||....      |..                          
T Consensus       136 DE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~------C~~--------------------------  183 (791)
T 3m0c_C          136 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR------CRG--------------------------  183 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccceeccCCCccccccccCCCCCcCCCCCCccccc------CCC--------------------------
Confidence            999998889999999999999999999999999999999997522      310                          


Q ss_pred             CCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeecCCccc
Q psy8875         206 PEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLC  284 (734)
Q Consensus       206 ~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C~~g~Ci~~~~~C  284 (734)
                        ++..        .....+|. .++|+|.+|+||+.+|+|||..||.|++||.+|. .+|.+++|+|.+|.||+..|+|
T Consensus       184 --~~~~--------~~~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~C  252 (791)
T 3m0c_C          184 --LYVF--------QGDSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC  252 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --cccc--------CCCCCCCC-CCcccccCCceeccccccCCCCCCCCCCCCCCccccccCCCcceecCCceEecceec
Confidence              0000        00012677 6899999999999999999999999999999997 5799999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCC-CCC-CCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCccc
Q psy8875         285 DGDDDCKDGSDEKSCQP-VKC-TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAM  362 (734)
Q Consensus       285 dg~~dC~dgsDe~~C~~-~~C-~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~  362 (734)
                      ||..||.||+||.+|.. ..| .+.+|+|.+ +.||+..++|++..||.++..+....|..   ..|...   ++.....
T Consensus       253 dg~~dC~dgsDE~~C~~~~~C~~~~~~~C~~-G~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~---~~C~~~---~~~C~~~  325 (791)
T 3m0c_C          253 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGT---NECLDN---NGGCSHV  325 (791)
T ss_dssp             --------------------CCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCTTBSC---CSTTTG---GGGCSSE
T ss_pred             CChhccccccccCcccccccccCCCccccCC-CcccccccccCCccccccccCcccccccc---cccccc---ccCcccc
Confidence            99999999999999984 346 478899998 89999999999999999985444333421   122110   0111345


Q ss_pred             ccc--cccccCCCCCCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCC
Q psy8875         363 KIV--RTAVCDKHPDCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS  438 (734)
Q Consensus       363 C~~--~~~~C~~~~~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~  438 (734)
                      |+.  .++.|    .|+.||.. ++..| ++|||. .++.|+++|+|++++|+|.|++||+|..++++|++++++.    
T Consensus       326 C~~~~~~y~C----~C~~Gy~l~~g~~C~dideC~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~~~~~~C~~~~~~p----  396 (791)
T 3m0c_C          326 CNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA----  396 (791)
T ss_dssp             EEECSBSEEE----ECCTTCEEETTTEEECCCCCS-SSSSCTTTCCBCSSCBCCCCCSSEECCSSCCCCEETTSCC----
T ss_pred             ccCCCCCccc----CCCCCCccCCCCccccCcccC-CCCCCCCeeecCCCCceeecCCCCEeCCCCceeeeccccc----
Confidence            654  46778    89999953 34468 899998 5679999999999999999999999999999999988753    


Q ss_pred             cccceeccCCceEEecC-CCeeeCCCCCcccccc--cc-cceeeeeec--cceEEeecCCC----ceEEEec-CCcceEE
Q psy8875         439 CSQICLNEKGGFKCECV-AGYIKDPHHPTQCKAA--EG-HASLLFARK--HDIRKISLDHH----EMTAIVN-STKSATA  507 (734)
Q Consensus       439 C~~~C~n~~g~~~C~C~-~gy~~~~~~~t~C~~~--~~-~~~l~~~~~--~~I~~i~l~~~----~~~~l~~-~~~~~~~  507 (734)
                       ..+..+....+.-... ..|...........++  .. ...|||++.  ..|+++.+++.    ....++. .+..|.|
T Consensus       397 -~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G  475 (791)
T 3m0c_C          397 -YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  475 (791)
T ss_dssp             -EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             -ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence             1223333322222111 1121110001112221  11 346777664  56999999874    4455555 7889999


Q ss_pred             EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc
Q psy8875         508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR  586 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~  586 (734)
                      ||+|+..++|||+|...++|++++++ |..+++++...+..|.+|||||..++|||||++. .+|++++++|+.+++++.
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            99999999999999999999999999 6677777777889999999999999999999986 899999999999999998


Q ss_pred             CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe-c
Q psy8875         587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-Y  663 (734)
Q Consensus       587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~  663 (734)
                      ..+.+|+|||||+..++|||+|++ ..+|++++++|+.+++++..  .+.+|.||++  ++++|||+|+.+++|++++ +
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~-~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCC-CCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCC
Confidence            899999999999999999999976 48999999999999999875  3566777776  5889999999999999998 6


Q ss_pred             CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         664 NGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       664 dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                      +|+.+++|..   .+.+|++|++++.
T Consensus       632 tG~~~~~l~~---~l~~P~~i~v~h~  654 (791)
T 3m0c_C          632 TGSDVNLLAE---NLLSPEDMVLFHN  654 (791)
T ss_dssp             TCCCCEEEEC---SCSCCCCEEEESG
T ss_pred             CCcceEEeec---CCCCceeEeeecc
Confidence            7888888763   4789999999764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=4.1e-79  Score=715.75  Aligned_cols=571  Identities=30%  Similarity=0.621  Sum_probs=446.6

Q ss_pred             CcCCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCC
Q psy8875          48 YWRSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGS  125 (734)
Q Consensus        48 c~~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~  125 (734)
                      | ...+|+ +.+|+|.+  ++|||..|+|||..||.|||||.+|....|.+.+|+|.+  |+||+..|+|||..||.||+
T Consensus        42 C-~~~~C~-~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~Cdg~~dC~dgs  117 (699)
T 1n7d_A           42 C-LSVTCK-SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD--GKCISRQFVCDSDRDCLDGS  117 (699)
T ss_dssp             ---CCSCS-SSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTSCSSCCCCSSCCCSSC--C----CCCTTCSSCCSSSSC
T ss_pred             c-CCcCCC-CCccCCCCCCCceeCcceecCCcccCCCCcccCcccccccccCcEEcCC--CCEecHHHcCCCcCcCCCCC
Confidence            7 567898 89999987  489999999999999999999999988899999999987  68999999999999999999


Q ss_pred             CcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccC
Q psy8875         126 DEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCAC  205 (734)
Q Consensus       126 de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C  205 (734)
                      ||.+|...+|.+.+|+|.+|+||+..|+|||..||.|||||....      |....                  ..    
T Consensus       118 DE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~------C~~~~------------------~~----  169 (699)
T 1n7d_A          118 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR------CRGLY------------------VF----  169 (699)
T ss_dssp             SSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSS------SSCCC------------------CC----
T ss_pred             ccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCccccccc------CCCcc------------------cc----
Confidence            999998889999999999999999999999999999999993321      52110                  00    


Q ss_pred             CCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCeecCCccc
Q psy8875         206 PEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTCANGNCIQRIWLC  284 (734)
Q Consensus       206 ~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C~~g~Ci~~~~~C  284 (734)
                       .             ....+|. .++|+|.+|+||+.+|+|||..||.||+||.+|. .+|.+.+|+|.+|.||+.+|+|
T Consensus       170 -~-------------~~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~C  234 (699)
T 1n7d_A          170 -Q-------------GDSSPCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQC  234 (699)
T ss_dssp             -S-------------SCCCCSC-SSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCCCCCCCSSEEESSSSCEEETTCCS
T ss_pred             -c-------------CCCCCCC-CcceecCCCceEechhccCCCCCCCCCcccccCCCcccCCCcEecCCCceeeeeccc
Confidence             0             0122687 6899999999999999999999999999999997 5899999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCC-CCC-CCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCCccc
Q psy8875         285 DGDDDCKDGSDEKSCQP-VKC-TAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIPPGFAMAM  362 (734)
Q Consensus       285 dg~~dC~dgsDe~~C~~-~~C-~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~~~~~~~~  362 (734)
                      ||..||.||+||.+|.. ..| .+.+|+|.+ ++||+..++|++..||.++.-+....|.   ...|...   ++.....
T Consensus       235 dg~~dC~dgsde~~C~~~~~C~~~~~~~C~~-g~Ci~~~~~Cd~~~dC~dgsDe~~~~C~---~~eC~~~---~~~C~~~  307 (699)
T 1n7d_A          235 DREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECG---TNECLDN---NGGCSHV  307 (699)
T ss_dssp             SSCCCSSSSCSSSSTTCCCCCCSTTCCCCTT-SCCCCSSCCSCSSCCSSSSCSCCCSSCC---CCCTTSS---TTTSCTT
T ss_pred             CCCCCCCCCCccCCCCCCCcccCCCceecCC-CcEeCCcccccccceecCcccccccccc---ccccccc---ccCcCCC
Confidence            99999999999999974 468 578899998 8999999999999999998322222221   1112100   0101334


Q ss_pred             ccc--cccccCCCCCCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCC
Q psy8875         363 KIV--RTAVCDKHPDCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGS  438 (734)
Q Consensus       363 C~~--~~~~C~~~~~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~  438 (734)
                      |+.  .++.|    .|+.||.. ++..| ++|||+. ++.|+++|+|++++|+|.|++||.|..++++|+++++..    
T Consensus       308 C~~~~~~~~C----~C~~G~~~~~~~~C~dideC~~-~~~C~~~C~n~~g~y~C~C~~G~~~~~~~~~C~~~~~~~----  378 (699)
T 1n7d_A          308 CNDLKIGYEC----LCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIA----  378 (699)
T ss_dssp             CCCCTTCCCC----CCCSSSCCCSSSCCCCCCCCSS-SSSCTTTCCBCSSCBCCCCCSSCBCCSSCCCCBCCSSCC----
T ss_pred             cccCCCCcEE----eCCCCeEcCCCCcccCccccCC-CCccccccccCCCCeeeeeecccccCCCCCcccccccce----
Confidence            544  35667    89999974 34568 8999973 578999999999999999999999999999998775432    


Q ss_pred             cccceeccCCceEEecCC-CeeeCCCCCcccc--ccc-ccceeeeee--ccceEEeecCC----CceEEEe-cCCcceEE
Q psy8875         439 CSQICLNEKGGFKCECVA-GYIKDPHHPTQCK--AAE-GHASLLFAR--KHDIRKISLDH----HEMTAIV-NSTKSATA  507 (734)
Q Consensus       439 C~~~C~n~~g~~~C~C~~-gy~~~~~~~t~C~--~~~-~~~~l~~~~--~~~I~~i~l~~----~~~~~l~-~~~~~~~~  507 (734)
                       ..+..+....+...... .|.........-.  +.. ....|||++  .+.|+++.+++    .....++ ..+..|.+
T Consensus       379 -~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~g  457 (699)
T 1n7d_A          379 -YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG  457 (699)
T ss_dssp             -CBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCC
T ss_pred             -eEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcce
Confidence             22333333333322221 1211111000011  122 134677765  46899999886    4444444 35678999


Q ss_pred             EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc
Q psy8875         508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR  586 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~  586 (734)
                      ||+|+..++|||+|...++|++++++ |..+++++...+..|.+|||||..++||||++.. ++|++++++|+.+++++.
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~  536 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  536 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESC
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEe
Confidence            99999999999999999999999998 5666666666788999999999999999999875 899999999999888887


Q ss_pred             CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEec-
Q psy8875         587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY-  663 (734)
Q Consensus       587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~-  663 (734)
                      ..+..|+|||||+..++|||+|++ ..+|++++++|+.+++++..  .+.+|.||+||  .++|||+|+..++|.+++. 
T Consensus       537 ~~l~~PnGlavd~~~~~LY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd--~~~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          537 ENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SSCSSCCCEEECTTTCCEEEEETT-TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEE--TTEEEEECSTTTCEEEEETT
T ss_pred             CCCCCccEEEEeccCCEEEEEecC-CCeEEEEccCCCceEEEEecCCcCCCceEeEEE--CCEEEEEeCCCCeEEEEEcc
Confidence            789999999999999999999975 58999999999999888753  47889999997  5799999999999999996 


Q ss_pred             CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         664 NGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       664 dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                      +|+.+++|.   ..+.+|++|+++..
T Consensus       614 ~G~~~~~i~---~~~~~P~~i~v~~~  636 (699)
T 1n7d_A          614 TGSDVNLLA---ENLLSPEDMVLFHQ  636 (699)
T ss_dssp             TEEEEECCC---TTCSSCCCCCBCSS
T ss_pred             CCCceEEee---cCCCCCcEEEEeCc
Confidence            566655553   23678999988654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=3.4e-58  Score=505.20  Aligned_cols=334  Identities=43%  Similarity=0.908  Sum_probs=306.7

Q ss_pred             cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcccc
Q psy8875         390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK  469 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~  469 (734)
                      |||...++.|++.|+|++++|+|.|++||+| .++++|+++|||+.+++|++.|+|+.|+|.|.|.+||.+..++++ |+
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~-~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~-C~   78 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQL-VAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CK   78 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEE-CSSSCEEECCCCSTTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSS-CC
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCc-CCCCcccCchhhhccCCCCCccCCCccceeeeccccccccccccc-ee
Confidence            5788778899999999999999999999999 589999999999988899999999999999999999999988777 99


Q ss_pred             cccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---CceEEEEeCCC
Q psy8875         470 AAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTVVIEEDK  546 (734)
Q Consensus       470 ~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~~~~~~  546 (734)
                      +.+..++|+|++++.|+++++++..++.++..+..|.+||||+.+++|||+|...++|+++.++++   ...+.++...+
T Consensus        79 ~~~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           79 AVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             CSTTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eccccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999842   23455666688


Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      ..|.||||||.+++|||+|...++|++++++|..+++++...+..|++|||||..|+|||+||+..++|++++|||+.++
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            89999999999999999999999999999999999999988899999999999999999999987789999999999999


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEec
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~  706 (734)
                      +++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++.....+.+|+||++++++|||+||++++|+++++
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEES
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEc
Confidence            99988999999999999999999999999999999999999999987656789999999999999999999999999999


Q ss_pred             cCCCceEEEecccccCCCccC
Q psy8875         707 FTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       707 ~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      .+|+.+++|...  +.+|+.|
T Consensus       319 ~~G~~~~~i~~~--~~~p~~i  337 (400)
T 3p5b_L          319 LTGSDVNLLAEN--LLSPEDM  337 (400)
T ss_dssp             SSCCCCEEEECS--CSCEEEE
T ss_pred             CCCCceEEEecC--CCCCceE
Confidence            999998888643  4444443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=9.9e-57  Score=491.67  Aligned_cols=335  Identities=42%  Similarity=0.865  Sum_probs=258.0

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQ  467 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~  467 (734)
                      ++|||..+++.|+|.|.+.+++|+|.|++||+|..++++|+++|||+.+++|+|.|+|+.|+|.|.|++||.+.++.++ 
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~-   80 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-   80 (386)
T ss_dssp             --------------------------------------------------CCTTEEC-----CCEECCTTEEECTTSSC-
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeCCcCcccCcCCCCCCCCeEEECCCceEcCCCCe-
Confidence            5789998889999999999999999999999999999999999999877899999999999999999999999888766 


Q ss_pred             cccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC
Q psy8875         468 CKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT  547 (734)
Q Consensus       468 C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~  547 (734)
                      |++.+..++|+|++.+.|+++++++..++.++..+..|.+|+||+..++|||+|...++|++++++ +...+.++..++.
T Consensus        81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~~~~~~  159 (386)
T 3v65_B           81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVVSTGLE  159 (386)
T ss_dssp             EEECSSCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEECSSCS
T ss_pred             ECCccccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEEeCCCC
Confidence            999888999999999999999999999999999999999999999999999999999999999999 4555556666788


Q ss_pred             CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875         548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM  627 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~  627 (734)
                      .|.||||||.+++|||+|...++|++++++|+.+++++...+..|++|||||..|+|||+|++..++|+|++++|+.+++
T Consensus       160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~  239 (386)
T 3v65_B          160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI  239 (386)
T ss_dssp             CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE
Confidence            99999999999999999999999999999999999999888999999999999999999999866899999999999999


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~  707 (734)
                      ++...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++..  .+.+|+||++++++|||+||++++|.++++.
T Consensus       240 ~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~giav~~~~ly~td~~~~~V~~~~~~  317 (386)
T 3v65_B          240 IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKF  317 (386)
T ss_dssp             EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECS--SCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEEC--CCCCceEEEEECCEEEEeeCCCCeEEEEECC
Confidence            99888999999999999999999999999999999999999888763  4789999999999999999999999999999


Q ss_pred             CCCceEEEecccccCCCccCC
Q psy8875         708 TGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       708 ~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +|+.+++|...  +..|++|+
T Consensus       318 ~G~~~~~i~~~--~~~p~gi~  336 (386)
T 3v65_B          318 TGKNQEIIRNK--LHFPMDIH  336 (386)
T ss_dssp             TCCSCEEEECS--CSCCCCEE
T ss_pred             CCcceEEEccC--CCCCceEE
Confidence            99999888743  55666553

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=6e-49  Score=424.10  Aligned_cols=293  Identities=42%  Similarity=0.843  Sum_probs=259.5

Q ss_pred             ccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEEecCCcceEEEe
Q psy8875         430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAIVNSTKSATAID  509 (734)
Q Consensus       430 ~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~  509 (734)
                      +|||+.++.|+|+|.|++|+|+|.|++||.+.+++++ |++.+..++|+|++.+.|+++.+++..++.++..+..|.+|+
T Consensus         1 i~ec~~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~-C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~   79 (349)
T 3v64_C            1 VNECAEEGYCSQGCTNSEGAFQCWCEAGYELRPDRRS-CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALD   79 (349)
T ss_dssp             --------CCSSEECCC---CCEECCTTEEECTTSSC-EEESSSCCEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEE
T ss_pred             CcccCCCCCCcCeeecCCCCeEEECCCCccCCCCCCc-ccccccCceeEeecccceEEEeCCCCeeEEeecCCCceEEEE
Confidence            5789877899999999999999999999999988776 999888999999999999999999999999999999999999


Q ss_pred             eeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC
Q psy8875         510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL  589 (734)
Q Consensus       510 ~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l  589 (734)
                      ||+.++.|||+|...++|+++++++ ...+.++..++..|.||||||.+++|||+|...++|++++++|+.+++++...+
T Consensus        80 ~d~~~~~ly~~D~~~~~I~r~~~~g-~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l  158 (349)
T 3v64_C           80 FHHRRELVFWSDVTLDRILRANLNG-SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSL  158 (349)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTC
T ss_pred             EeccccEEEEEeccCCceEEEecCC-CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCC
Confidence            9999999999999999999999994 445555566788999999999999999999999999999999999999988889


Q ss_pred             CCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR  669 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~  669 (734)
                      ..|++|||||..|+|||+|++..++|+|+++||+.+++++...+.+|+|||||+.+++|||+|+..++|++++++|+.++
T Consensus       159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~  238 (349)
T 3v64_C          159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK  238 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceE
Confidence            99999999999999999999866899999999999998888889999999999999999999999999999999999998


Q ss_pred             EEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         670 LVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       670 ~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +++..  .+.+|+||++++++||||||++++|.++++.+|+.+++|...  +.+|++|+
T Consensus       239 ~~~~~--~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~--~~~p~gi~  293 (349)
T 3v64_C          239 AVISQ--GLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNK--LHFPMDIH  293 (349)
T ss_dssp             EEECS--SCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECS--CSCCCCEE
T ss_pred             EEEeC--CCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccC--CCCCceEE
Confidence            88764  378999999999999999999999999999999999888743  55666553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=4.7e-45  Score=421.28  Aligned_cols=284  Identities=32%  Similarity=0.603  Sum_probs=253.5

Q ss_pred             cccCcCC-CCCcccceeccC-CceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCce---EEEecCCc
Q psy8875         429 DIDECET-PGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEM---TAIVNSTK  503 (734)
Q Consensus       429 ~~~eC~~-~~~C~~~C~n~~-g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~---~~l~~~~~  503 (734)
                      .+|||+. ++.|+|+|.+++ ++|.|.|++||.+..++++ |++.  .++|+|+....|+++.++....   ...+.++.
T Consensus       264 ~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~-C~~~--~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~  340 (628)
T 4a0p_A          264 GWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRT-CSAP--TTFLLFSQKSAINRMVIDEQQSPDIILPIHSLR  340 (628)
T ss_dssp             CCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSC-EECC--SSEEEEEETTEEEEECCCTTCCCCEECCCTTCS
T ss_pred             cceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCc-Cccc--cceeeeeccceEEEEecccccCceEEEEehhcC
Confidence            4788975 488999999999 9999999999999988777 9874  6799999999999999876532   33345788


Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG  578 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG  578 (734)
                      ++.+|+||+.+++|||+|...++|+|+.+++....+++..     ..+..|.||||||.+++|||+|...++|++++++|
T Consensus       341 ~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G  420 (628)
T 4a0p_A          341 NVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG  420 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC
Confidence            9999999999999999999999999999984333344432     25678999999999999999999999999999999


Q ss_pred             CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      +.+++|+...+..|++|||||.+|+||||||+..+ +|+|++|||+.+++++...+.+|+|||||+.+++|||+|++.++
T Consensus       421 ~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~  500 (628)
T 4a0p_A          421 RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR  500 (628)
T ss_dssp             CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCE
Confidence            99999988889999999999999999999998765 99999999999999999899999999999999999999999999


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      |++++++|++++++..  ..+.+|+||++++++||||||.+++|++++|.+|+..++|..
T Consensus       501 I~~~~~dG~~r~~~~~--~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~  558 (628)
T 4a0p_A          501 IESSDLSGANRIVLED--SNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQA  558 (628)
T ss_dssp             EEEEETTSCSCEEEEC--SSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEEC
T ss_pred             EEEEeCCCCceEEEEc--CCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEec
Confidence            9999999999999886  357899999999999999999999999999999999888865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1.6e-44  Score=416.51  Aligned_cols=290  Identities=36%  Similarity=0.761  Sum_probs=257.6

Q ss_pred             ccCcCC-CCCcccceeccC--CceEEecCCCeeeCCCCCcccccccccceeeeeeccceEEeecCCCceEEE---ecCCc
Q psy8875         430 IDECET-PGSCSQICLNEK--GGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLDHHEMTAI---VNSTK  503 (734)
Q Consensus       430 ~~eC~~-~~~C~~~C~n~~--g~~~C~C~~gy~~~~~~~t~C~~~~~~~~l~~~~~~~I~~i~l~~~~~~~l---~~~~~  503 (734)
                      .++|.. ++.|+|+|.+.+  .+|+|.|++||.+..++++ |++. .+++|+|+.+..|+++.++....+.+   +.++.
T Consensus       272 ~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~-C~~~-~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~  349 (619)
T 3s94_A          272 TNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKT-CKDG-ATELLLLARRTDLRRISLDTPDFTDIVLQLEDIR  349 (619)
T ss_dssp             CCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSC-BCSS-CSEEEEEEESSCEEEEESSSTTCCCEECCCSCCS
T ss_pred             cccccCCCCcccceEECCCCCCCceEeCCchheecccCcc-cCCC-CceEEEEEcccceEEEecCCCccceeEEeccccC
Confidence            567864 489999999887  4799999999999988776 9874 47899999999999999987765433   35688


Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      ++.+||||+.+++|||+|...++|+|+.++ |+..+.++..++..|.||||||.+++|||+|...++|++++++|+.+++
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~-g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFID-GSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcC-CCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            999999999999999999999999999999 5555666667889999999999999999999999999999999999999


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      |+...+..|++|||||.+|+||||||+..++|++++|||+.+++++...+.+|+|||||+.+++|||+|+..++|+++++
T Consensus       429 l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~  508 (619)
T 3s94_A          429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT  508 (619)
T ss_dssp             EECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred             EEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence            99889999999999999999999999877899999999999999998889999999999999999999999999999999


Q ss_pred             CCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccC
Q psy8875         664 NGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       664 dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      +|+.+++++.  ..+.+|+||++++++||||||.+++|+++++.+| ..+++...  +..|++|
T Consensus       509 dG~~~~~~~~--~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~--~~~~~~i  567 (619)
T 3s94_A          509 DGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQ--LPDLMGL  567 (619)
T ss_dssp             SSCCCEEEEE--CCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECS--CCCEEEE
T ss_pred             CCCceEEEec--cCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecC--CCCCcee
Confidence            9999999886  3588999999999999999999999999999999 44555432  4455543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=9.6e-41  Score=354.64  Aligned_cols=253  Identities=43%  Similarity=0.857  Sum_probs=227.6

Q ss_pred             cccceeeeeeccceEEeecCCC--ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         472 EGHASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       472 ~~~~~l~~~~~~~I~~i~l~~~--~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      +++|+|||++++.|+++++++.  .+..++.++..+++|+||+.++.|||+|...++|+++.++++...+.++..++..|
T Consensus         2 g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            2 GSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             --CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             CCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            4578999999999999999987  46677788889999999999999999999999999999995543344555578899


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI  629 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv  629 (734)
                      .||||||.+++|||+|...++|++++++|..+++++...+..|++|||||..|+|||+|++..++|++++|||+.+++++
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  161 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  161 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence            99999999999999999999999999999999999888899999999999999999999987789999999999999998


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      ...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++.  ..+.+|+||+++++.|||+||++++|.++++.+|
T Consensus       162 ~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~--~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          162 NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--SCCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec--CCCCCceEEEEeCCEEEEEecCCCeEEEEECCCC
Confidence            88899999999999999999999999999999999999999885  3588999999999999999999999999999999


Q ss_pred             CceEEEecccccCCCccCC
Q psy8875         710 DNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       710 ~~~~~l~~~~~l~~P~~i~  728 (734)
                      +.+++|...  +.+|++|+
T Consensus       240 ~~~~~i~~~--~~~P~~i~  256 (318)
T 3sov_A          240 EGLREIHSD--IFSPMDIH  256 (318)
T ss_dssp             CSCEEEECC--CSSCCCEE
T ss_pred             CceEEEeCC--CCCCcEEE
Confidence            988887643  55666654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=4.3e-39  Score=342.46  Aligned_cols=252  Identities=41%  Similarity=0.813  Sum_probs=226.2

Q ss_pred             cceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCcc
Q psy8875         474 HASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIAD  550 (734)
Q Consensus       474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~  550 (734)
                      +|+|||++++.|+++++++..+..+++.+..|.+++||+.+++|||+|...++|+++++++   ++..+.++...+..|.
T Consensus         1 ~~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            1 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             CCEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             CCEEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            4789999999999999999999889999999999999999999999999999999999985   1444555555778999


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      ||||||.+++|||+|...++|.+++++|+.+++++...+..|++|||||..|+|||+|++..++|+++++||+.+++++.
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            99999999999999999999999999999988888778899999999999999999998755899999999999998888


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      ..+.+|+||+||+.+++|||+|+..++|++++++|+.+++++.....+.+|+||++++++|||+||++++|.++++.+|+
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence            88999999999999999999999999999999999999998875456789999999999999999999999999999999


Q ss_pred             ceEEEecccccCCCccC
Q psy8875         711 NLTAITGVHQTHEPLNS  727 (734)
Q Consensus       711 ~~~~l~~~~~l~~P~~i  727 (734)
                      .+++|...  +..|++|
T Consensus       241 ~~~~i~~~--~~~p~~i  255 (316)
T 1ijq_A          241 DVNLLAEN--LLSPEDM  255 (316)
T ss_dssp             CCEEEECS--CSCCCCE
T ss_pred             ceEEEecC--CCCceEE
Confidence            88888643  5566665

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=2.2e-38  Score=365.62  Aligned_cols=248  Identities=41%  Similarity=0.797  Sum_probs=223.6

Q ss_pred             ccceeeeeeccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         473 GHASLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       473 ~~~~l~~~~~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      ++++|+|++++.|+++++++.....++  .++..|.+||||+.+++|||+|...++|++++++ |+..+.++..++..|.
T Consensus         5 p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~-g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN-GSALEHVVEFGLDYPE   83 (628)
T ss_dssp             CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCC
T ss_pred             CCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC-CCCcEEEEeCCCCCcc
Confidence            468999999999999999987765554  3678999999999999999999999999999999 5555666666788999


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      ||||||.+++|||+|...++|++++++|+.+++++...+..|++|||||..|+||||||+..++|+|++|||+.+++++ 
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-  162 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-  162 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence            9999999999999999999999999999999999888899999999999999999999987799999999999999887 


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      ..+.+|+||+||+.+++|||+|+..++|++++++|+.++++..   .+.+|+||++++++||||||.+++|++++|.+|+
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~---~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIAD---DLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE---CCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeec---cCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence            4789999999999999999999999999999999999976653   4789999999999999999999999999999999


Q ss_pred             ceEEEecccccCCCccC
Q psy8875         711 NLTAITGVHQTHEPLNS  727 (734)
Q Consensus       711 ~~~~l~~~~~l~~P~~i  727 (734)
                      .+++|...  +..|++|
T Consensus       240 ~~~~l~~~--~~~p~~i  254 (628)
T 4a0p_A          240 NRTIIQGH--LDYVMDI  254 (628)
T ss_dssp             SCEEEECS--CCSCCEE
T ss_pred             ceEEEecC--CCCccee
Confidence            99988753  4455544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1.4e-38  Score=366.97  Aligned_cols=242  Identities=45%  Similarity=0.887  Sum_probs=208.8

Q ss_pred             cceeeeeeccceEEeecCCC--ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         474 HASLLFARKHDIRKISLDHH--EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       474 ~~~l~~~~~~~I~~i~l~~~--~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      .|+|++++++.|+++++++.  ++..++..+..|.||||++.+++|||+|...++|+++.+++....+.++..++..|.|
T Consensus         9 ~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G   88 (619)
T 3s94_A            9 APLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   88 (619)
T ss_dssp             -CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred             CceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence            57899999999999999976  4666778899999999999999999999999999999999543345666668889999


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      |||||.+++|||+|...++|.+++++|+.+++++...+..|++|||||.+|+||||||+..++|+|++|||+.+++++..
T Consensus        89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~  168 (619)
T 3s94_A           89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  168 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence            99999999999999999999999999999999998889999999999999999999998778999999999999999988


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                      .+.+|+|||||+.+++|||+|...++|++++++|+.+++++.  ..+.+|+||++++++||||||.+++|+++++.+|+.
T Consensus       169 ~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~--~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          169 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK--GSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSSEEEEECTTTCSEEEEESSSCCC
T ss_pred             CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEe--CCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcc
Confidence            899999999999999999999999999999999999998875  347899999999999999999999999999999998


Q ss_pred             eEEEec
Q psy8875         712 LTAITG  717 (734)
Q Consensus       712 ~~~l~~  717 (734)
                      +++|..
T Consensus       247 ~~~i~~  252 (619)
T 3s94_A          247 LREIHS  252 (619)
T ss_dssp             CEECCS
T ss_pred             cEEEec
Confidence            887754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=1.6e-35  Score=324.94  Aligned_cols=302  Identities=21%  Similarity=0.426  Sum_probs=230.9

Q ss_pred             CCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEE
Q psy8875         375 DCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC  452 (734)
Q Consensus       375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C  452 (734)
                      .|+.||.. ++..| ++|||. .+..|++.|+|++++|+|.|++||.+..++++|+++++...     .+-.+...-+.-
T Consensus        24 ~C~~G~~~~~~~~C~dideC~-~~~~C~~~C~n~~g~~~C~C~~g~~~~~~~~~C~~~~~~~~-----ll~~~~~~I~~i   97 (400)
T 3p5b_L           24 LCPDGFQLVAQRRCEDIDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAY-----LFFTNRHEVRKM   97 (400)
T ss_dssp             ECCTTEEECSSSCEEECCCCS-TTSSCSSCCBCCSSSCBCCCCTTCCCCTTTSSCCCSTTSCE-----EEEEETTEEEEE
T ss_pred             ECCCCCCcCCCCcccCchhhh-ccCCCCCccCCCccceeeeccccccccccccceeeccccce-----eEEeccceeEEE
Confidence            56666642 23457 899998 45789999999999999999999999999999988754210     011111000000


Q ss_pred             ecC-CCeee--CCCCCccccccc-ccceeeeee--ccceEEeecCC----CceEEEec-CCcceEEEeeeccCCeEEEEE
Q psy8875         453 ECV-AGYIK--DPHHPTQCKAAE-GHASLLFAR--KHDIRKISLDH----HEMTAIVN-STKSATAIDFVFRTGMIFWSD  521 (734)
Q Consensus       453 ~C~-~gy~~--~~~~~t~C~~~~-~~~~l~~~~--~~~I~~i~l~~----~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d  521 (734)
                      .-. ..|..  .......-.+.+ ....|||++  ...|+++.+++    .....++. .+..|.+||+|+..+.|||+|
T Consensus        98 ~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d  177 (400)
T 3p5b_L           98 TLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD  177 (400)
T ss_dssp             CTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred             ccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEE
Confidence            000 00110  000000001111 234677775  46799999887    34555555 788999999999999999999


Q ss_pred             eCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC
Q psy8875         522 ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPI  600 (734)
Q Consensus       522 ~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~  600 (734)
                      ...++|.+++++ |..+++++...+..|.+||||+..++|||||++ .++|++++++|+.+++++...+..|+|||||+.
T Consensus       178 ~~~~~I~~~~~~-g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~  256 (400)
T 3p5b_L          178 SVLGTVSVADTK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL  256 (400)
T ss_dssp             TTTTEEEEECTT-TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETT
T ss_pred             CCCCeEEEEeCC-CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeC
Confidence            999999999999 566777777788999999999999999999987 489999999999999999888999999999999


Q ss_pred             CCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCC
Q psy8875         601 DGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQT  677 (734)
Q Consensus       601 ~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~  677 (734)
                      .++|||+|+. ..+|++++++|+.+++++..  .+.+|.||+++  +++|||+|+.+++|++++ .+|+.+++|..   .
T Consensus       257 ~~~lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~---~  330 (400)
T 3p5b_L          257 SGRLYWVDSK-LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE---N  330 (400)
T ss_dssp             TTEEEEEETT-TTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEEC---S
T ss_pred             CCEEEEEECC-CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEec---C
Confidence            9999999975 58999999999999988874  47889999985  889999999999999999 78988888763   4


Q ss_pred             CCCCeEEEEECC
Q psy8875         678 LSHPFSISTFED  689 (734)
Q Consensus       678 ~~~P~gl~v~~~  689 (734)
                      +.+|++|+++..
T Consensus       331 ~~~p~~i~v~~~  342 (400)
T 3p5b_L          331 LLSPEDMVLFHN  342 (400)
T ss_dssp             CSCEEEEEEESG
T ss_pred             CCCCceEEEEee
Confidence            678999999764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=6.1e-36  Score=326.94  Aligned_cols=302  Identities=25%  Similarity=0.471  Sum_probs=216.2

Q ss_pred             CCCCCCC--CCCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceE
Q psy8875         375 DCPLMQD--EDPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFK  451 (734)
Q Consensus       375 ~C~~g~d--~~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~  451 (734)
                      .|++||.  .++..| ++|||. .++.|++.|+|++++|+|.|++||.|.+++++|+.+++ ...    .+..+...-++
T Consensus        27 ~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~~C~~~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~----l~~~~~~~I~~  100 (386)
T 3v65_B           27 TCHTGYRLTEDGRTCQDVNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPV----LLFANRIDIRQ  100 (386)
T ss_dssp             --------------------------CCTTEEC-----CCEECCTTEEECTTSSCEEECSS-CCE----EEEECBSCEEE
T ss_pred             ECCCCceECCCCCccCccceeC-CcCcccCcCCCCCCCCeEEECCCceEcCCCCeECCccc-cce----eEeecCcccee
Confidence            6777774  334568 899997 45789999999999999999999999999999987764 211    01111111010


Q ss_pred             EecC-CCeeeCCCCCccccc--cc-ccceeeeee--ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCC
Q psy8875         452 CECV-AGYIKDPHHPTQCKA--AE-GHASLLFAR--KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISE  524 (734)
Q Consensus       452 C~C~-~gy~~~~~~~t~C~~--~~-~~~~l~~~~--~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~  524 (734)
                      -.-. ..+.........-.+  .+ ....|||++  .+.|+++.+++...+.++. .+..|.+|++|+..+.|||+|...
T Consensus       101 i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~  180 (386)
T 3v65_B          101 VLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT  180 (386)
T ss_dssp             ECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTT
T ss_pred             eccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCC
Confidence            0000 000000000000111  11 234577765  4679999999887766654 677899999999999999999999


Q ss_pred             CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCe
Q psy8875         525 KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW  603 (734)
Q Consensus       525 ~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~  603 (734)
                      ++|.+++++ |..+++++...+..|.+||||+..++|||+|+.. ++|++++++|+.+++++...+..|+|||||+..++
T Consensus       181 ~~I~~~~~d-g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~  259 (386)
T 3v65_B          181 SRIEVANLD-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR  259 (386)
T ss_dssp             TEEEECBTT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTE
T ss_pred             CeEEEEeCC-CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCE
Confidence            999999998 5666677777889999999999999999999997 99999999999999999888999999999999999


Q ss_pred             EEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCCCCCCe
Q psy8875         604 MYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQTLSHPF  682 (734)
Q Consensus       604 LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~~~~P~  682 (734)
                      |||+|+. ..+|++++++|+.+++++...+.+|.||+|+  +++|||+|+..++|.+++ .+|+.+++|..   .+..|+
T Consensus       260 lY~aD~~-~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~---~~~~p~  333 (386)
T 3v65_B          260 MYWVDAK-HHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRN---KLHFPM  333 (386)
T ss_dssp             EEEEETT-TTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---SCSCCC
T ss_pred             EEEEECC-CCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCCcceEEEcc---CCCCCc
Confidence            9999976 4799999999999998888889999999995  789999999999999999 78988888863   478899


Q ss_pred             EEEEECC
Q psy8875         683 SISTFED  689 (734)
Q Consensus       683 gl~v~~~  689 (734)
                      +|+++..
T Consensus       334 gi~v~~~  340 (386)
T 3v65_B          334 DIHTLHP  340 (386)
T ss_dssp             CEEEESG
T ss_pred             eEEEEch
Confidence            9999753

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=6.9e-35  Score=314.17  Aligned_cols=287  Identities=25%  Similarity=0.472  Sum_probs=219.6

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCC--eeeCCCCCc
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAG--YIKDPHHPT  466 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~g--y~~~~~~~t  466 (734)
                      +|||. .++.|+|.|+|++++|+|.|++||.|.+++++|++.++ ...    .+..+...-++-. ..|  +........
T Consensus         1 i~ec~-~~~~C~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~~-~~~----ll~~~~~~I~~i~-~~g~~~~~~~~~~~   73 (349)
T 3v64_C            1 VNECA-EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGP-EPV----LLFANRIDIRQVL-PHRSEYTLLLNNLE   73 (349)
T ss_dssp             ---------CCSSEECCC---CCEECCTTEEECTTSSCEEESSS-CCE----EEEECBSCEEEEC-TTSCCEEEEECSCS
T ss_pred             CcccC-CCCCCcCeeecCCCCeEEECCCCccCCCCCCccccccc-Cce----eEeecccceEEEe-CCCCeeEEeecCCC
Confidence            57898 67899999999999999999999999999999987765 211    0111111111100 001  111000000


Q ss_pred             cccc--cc-ccceeeeee--ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE
Q psy8875         467 QCKA--AE-GHASLLFAR--KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV  540 (734)
Q Consensus       467 ~C~~--~~-~~~~l~~~~--~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~  540 (734)
                      .-.+  .+ ....|||++  .+.|+++.+++...+.++. .+..|.+|++|+..+.|||+|...++|++++++ |..+++
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~  152 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKV  152 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEE
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEE
Confidence            0111  11 234677765  5679999999887766654 577899999999999999999999999999999 566677


Q ss_pred             EEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEec
Q psy8875         541 VIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAG  619 (734)
Q Consensus       541 ~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~  619 (734)
                      ++...+..|.+||||+..+.|||+|+.. ++|++++++|+.+++++...+..|+|||||+..++|||+|++ ..+|++++
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~  231 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERAN  231 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEE
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEe
Confidence            7767889999999999999999999998 999999999999998887889999999999999999999976 47999999


Q ss_pred             cCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe-cCCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD-YNGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       620 ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                      ++|+.+++++...+.+|.||+|+  +++|||+|+..++|.+++ .+|+.++++..   .+..|++|+++..
T Consensus       232 ~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~---~~~~p~gi~v~~~  297 (349)
T 3v64_C          232 LDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRN---KLHFPMDIHTLHP  297 (349)
T ss_dssp             TTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---SCSCCCCEEEECG
T ss_pred             CCCCceEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEEecc---CCCCCceEEEEcc
Confidence            99999998888889999999995  789999999999999999 78998888863   4788999999753

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=100.00  E-value=7.3e-31  Score=271.70  Aligned_cols=249  Identities=30%  Similarity=0.603  Sum_probs=213.8

Q ss_pred             ceeeeeeccceEEeecCCCceE-----EEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC
Q psy8875         475 ASLLFARKHDIRKISLDHHEMT-----AIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI  548 (734)
Q Consensus       475 ~~l~~~~~~~I~~i~l~~~~~~-----~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~  548 (734)
                      ++|+|++.+.|+++++++....     .++ .....|.+|++|+..+.|||+|...++|+++++++ .....++...+..
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCCC
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCCCC
Confidence            5789999999999999987542     222 23567899999998999999999999999999984 4445555556789


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEE
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNM  627 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~  627 (734)
                      |.+||+|+.+++|||++...++|.+++++|...++++...+..|++|++||..++|||++++. .++|+++++||+.+++
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~  160 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI  160 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence            999999999999999999999999999999888888777778999999999999999999763 4799999999998888


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~  707 (734)
                      +....+..|+||++|+.+++|||+|...++|.+++++|..++.++.   .+.+|++|++++++|||+++.+++|+++++.
T Consensus       161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~---~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE---GLQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE---CCCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec---CCCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence            7777788999999998899999999999999999999988777764   3678999999999999999999999999999


Q ss_pred             CCCceEEEecccccCCCccCC
Q psy8875         708 TGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       708 ~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +|+.++.+... ....|.+|+
T Consensus       238 ~g~~~~~i~~g-~~~~p~gi~  257 (267)
T 1npe_A          238 ISKEMDTFHPH-KQTRLYGIT  257 (267)
T ss_dssp             TTEEEEEECCS-SCCCCCCEE
T ss_pred             CCCceEEEccc-cccccceee
Confidence            99988887643 234577764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.95  E-value=2.3e-26  Score=243.87  Aligned_cols=208  Identities=24%  Similarity=0.448  Sum_probs=181.5

Q ss_pred             ceeeeee--ccceEEeecCCCce--EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEM--TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~--~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      ..|||++  ...|+++.+++...  ..+...+..|.+|++|+..+.|||+|...++|.+++++ |..+++++...+..|.
T Consensus        47 ~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~~~~P~  125 (318)
T 3sov_A           47 GLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPR  125 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEE
T ss_pred             CEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcEEEEEeCCCCCcc
Confidence            4677765  46799999988753  34445678999999999999999999999999999998 5666677767889999


Q ss_pred             ceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI  629 (734)
Q Consensus       551 glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv  629 (734)
                      +||||+..++|||+|+. ..+|++++++|+.+++++...+..|+|||||+..++|||+|+. ..+|+++++||+.+++++
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCCCceEEEe
Confidence            99999999999999986 6899999999999999988889999999999999999999975 589999999999999988


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec-CCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY-NGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                      ...+.+|.||++|  ++.|||+|+..++|.+++. +|+.+++|..   .+.+|++|++++.
T Consensus       205 ~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~---~~~~P~~i~v~~~  260 (318)
T 3sov_A          205 KGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHS---DIFSPMDIHAFSQ  260 (318)
T ss_dssp             CSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEEC---CCSSCCCEEEECG
T ss_pred             cCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEeC---CCCCCcEEEEecc
Confidence            7789999999997  7899999999999999998 6888777763   3678999999754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.94  E-value=7.8e-25  Score=232.40  Aligned_cols=206  Identities=20%  Similarity=0.355  Sum_probs=171.0

Q ss_pred             eEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC----CceEEEEcCCCCC
Q psy8875         516 MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG----TMRKVLVRSYLDE  591 (734)
Q Consensus       516 ~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG----~~~~~l~~~~l~~  591 (734)
                      .|+|+.  ...|++++++++. .+.++. .+..|.+|++|+.+++|||+|...++|++++++|    +..+.++...+..
T Consensus         3 ~ll~~~--~~~I~~i~~~~~~-~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~   78 (316)
T 1ijq_A            3 YLFFTN--RHEVRKMTLDRSE-YTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (316)
T ss_dssp             EEEEEC--BSSEEEEETTSCC-CEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEEC--CCeEEEEECCCcc-eEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence            466664  4679999998543 344443 6889999999999999999999999999999998    5556666667889


Q ss_pred             ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEE
Q psy8875         592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRL  670 (734)
Q Consensus       592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~  670 (734)
                      |.+||||+..+.|||+|.. ..+|.+++++|..+++++...+..|++|++|+.+++|||+|+.. ++|++++++|+.+++
T Consensus        79 p~glavd~~~~~ly~~d~~-~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           79 PDGLAVDWIHSNIYWTDSV-LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             CCEEEEETTTTEEEEEETT-TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             cCEEEEeecCCeEEEEECC-CCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence            9999999999999999975 58999999999998888887889999999999999999999876 899999999999988


Q ss_pred             EEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEec-ccccCCCccCCC
Q psy8875         671 VLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITG-VHQTHEPLNSPG  729 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~-~~~l~~P~~i~~  729 (734)
                      ++..  .+..|.||+++  +++|||+|+.+++|.+++. +|+.++++.. ...+.+|.+|+.
T Consensus       158 ~~~~--~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~-dg~~~~~~~~~~~~~~~P~giav  216 (316)
T 1ijq_A          158 LVTE--NIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAV  216 (316)
T ss_dssp             EECS--SCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEE
T ss_pred             EEEC--CCCCceEEEEeccCCEEEEEECCCCeEEEEec-CCCceEEEeecCCccCCcEEEEE
Confidence            8753  47899999996  7899999999999999986 4666666643 345788988863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.92  E-value=1.9e-23  Score=219.15  Aligned_cols=212  Identities=9%  Similarity=0.171  Sum_probs=172.4

Q ss_pred             eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEE---eCCCcEEEEecCCCCceEEEEeCCCCCccceeeec
Q psy8875         480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSD---ISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d---~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~  556 (734)
                      ++++.|+++.+++.+.+.|......    ++.+..++|||++   .....|++++++ |+..+.+.....     ++++|
T Consensus        85 ~n~~~Iy~i~~dg~~~~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~~-----~~~~~  154 (302)
T 3s25_A           85 YDRNSLCRIKRNGHGSTVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHYL-----FTCNT  154 (302)
T ss_dssp             CCSEEEEEEETTSCCCEEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSCC-----CCSEE
T ss_pred             cCCCeEEEEeCCCCcceEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCCc-----eEeeE
Confidence            3467899999999998888765433    3344589999999   567789999999 566666655322     67899


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      .+++|||++.+..+|++++++|..++.|+..    +..++++|..++|||++|+...+|++++|||+.+++|+...+  |
T Consensus       155 ~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~~--~  228 (302)
T 3s25_A          155 SDRYFYYNNPKNGQLYRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANI--E  228 (302)
T ss_dssp             ETTEEEEECTTTCCEEEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSCE--E
T ss_pred             ECCEEEEEeCCCceEEEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCCc--c
Confidence            9999999999889999999999998887643    445667789999999999766899999999999988865544  3


Q ss_pred             eeEEEecCCCeEEEE-eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         637 NGLTLDLVQRRLYWV-DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       637 ~glavD~~~~~LYw~-D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                         .+|+.+++|||+ +.....|+++++||+.+++|...     ...+|++++++|||+||.+++|++++ .+|+..++|
T Consensus       229 ---~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~~~l  299 (302)
T 3s25_A          229 ---HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EFCNINVTSQYVYFTDFVSNKEYCTS-TQNPDTIKA  299 (302)
T ss_dssp             ---EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CEEEEEECSSEEEEEETTTCCEEEEE-SSSCCSCEE
T ss_pred             ---eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----ccceEEEeCCEEEEEECCCCeEEEEE-CCCCCceEe
Confidence               377789999997 66678999999999999988753     24589999999999999999999985 678776655


Q ss_pred             e
Q psy8875         716 T  716 (734)
Q Consensus       716 ~  716 (734)
                      .
T Consensus       300 ~  300 (302)
T 3s25_A          300 L  300 (302)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.91  E-value=8.7e-23  Score=210.88  Aligned_cols=206  Identities=23%  Similarity=0.422  Sum_probs=168.4

Q ss_pred             CeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCC
Q psy8875         515 GMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD  590 (734)
Q Consensus       515 ~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~  590 (734)
                      ..|||++.  +.|++++++++...    ..++......|.+|++|+.+++|||+|...++|.+++++|.....++...+.
T Consensus         2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             cEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            46888874  58999999854322    2233323467999999999999999999999999999999887777766778


Q ss_pred             CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCce
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNR  668 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~  668 (734)
                      .|.+|++|+..++|||+|.+ ..+|.+++++|..+++++...+..|++|++|+.+++|||++..  .++|++++++|+.+
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~-~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQ-LDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CccEEEEEecCCeEEEEECC-CCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            99999999999999999975 4799999999998887877777899999999889999999987  67999999999988


Q ss_pred             EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         669 RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       669 ~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +++..  ..+..|.+|++.  +++|||+|+.+++|.+++..++ .++.+..  .+.+|.+++
T Consensus       159 ~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~-~~~~~~~--~~~~P~gi~  215 (267)
T 1npe_A          159 RILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP-GRRKVLE--GLQYPFAVT  215 (267)
T ss_dssp             EEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE-EEEEEEE--CCCSEEEEE
T ss_pred             EEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC-ceEEEec--CCCCceEEE
Confidence            87764  246789999995  5799999999999999987543 3333332  366787775

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.84  E-value=5.1e-19  Score=195.50  Aligned_cols=227  Identities=16%  Similarity=0.196  Sum_probs=174.0

Q ss_pred             ceeeeeec-cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         475 ASLLFARK-HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       475 ~~l~~~~~-~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      ..||+++. +.|+++++....+..++..+..|.+|++++..+ |||+|...    ..|+++...++......+. .+..|
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P  230 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGA  230 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSB
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCCC
Confidence            46777766 889999997777877877888999999998666 99999743    2366666553333222333 57889


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---  624 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---  624 (734)
                      .+||+|+..++|||++...++|++++++ |...+.++ ......+.+|++||..++|||+|.+ .++|+++++++..   
T Consensus       231 ~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~-~~~I~~~~~d~~~~~~  309 (433)
T 4hw6_A          231 KTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG-KHCIYRVDYNRETGKL  309 (433)
T ss_dssp             CCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-TTEEEEEEBCTTTCCB
T ss_pred             CEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-CCEEEEEeCCCCCccc
Confidence            9999998899999999999999999998 55523333 3445567789999988889999975 5899999887532   


Q ss_pred             --eEEEEEc--------------CCCCceeEEE---------ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC-----
Q psy8875         625 --RNMVIVS--------------DIKWPNGLTL---------DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS-----  674 (734)
Q Consensus       625 --~~~lv~~--------------~l~~P~glav---------D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~-----  674 (734)
                        ..++...              .+.+|.||++         | ..+.|||+|+.+++|.+++.+|. ..+++..     
T Consensus       310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~-v~t~~G~g~~~~  387 (433)
T 4hw6_A          310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGR-VTTYAGRGNSRE  387 (433)
T ss_dssp             CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSE-EEEEECCCTTCS
T ss_pred             CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCC-EEEEEeCCCCCc
Confidence              1233322              3678999999         5 78899999999999999998883 3344321     


Q ss_pred             ----------CCCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875         675 ----------PQTLSHPFSISTF--EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       675 ----------~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~  706 (734)
                                ...+.+|.+|++.  ++.||++|+++++|+++.+
T Consensus       388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence                      1136789999998  7999999999999998864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=5e-19  Score=195.55  Aligned_cols=231  Identities=13%  Similarity=0.168  Sum_probs=177.3

Q ss_pred             cceeeeeec-cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCC
Q psy8875         474 HASLLFARK-HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTI  548 (734)
Q Consensus       474 ~~~l~~~~~-~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~  548 (734)
                      ...||+++. +.|+++++++..+..+......|.+|++++..++|||+|...+    .|+.+..+++......+. .+..
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~  227 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQN  227 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSS
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCC
Confidence            346777766 7899999998888888888889999999998888999998543    466666663332222222 4678


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---  624 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---  624 (734)
                      |.+||+|+..++|||+|...++|+++++++.....+. ......|++|++||..++|||++.. .++|++.+++|..   
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-~~~I~~~~~d~~~~~~  306 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-QHYILRSDYDWKTKRL  306 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEE
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-CCEEEEEeCCcccccc
Confidence            9999999889999999999999999999987664443 3445689999999988889999975 5899999998752   


Q ss_pred             --eEEEEEc--------------CCCCce-eEEEec-------CCCeEEEEeCCCCeEEEEecCCCceEEEEcC------
Q psy8875         625 --RNMVIVS--------------DIKWPN-GLTLDL-------VQRRLYWVDAKLNEISSCDYNGGNRRLVLYS------  674 (734)
Q Consensus       625 --~~~lv~~--------------~l~~P~-glavD~-------~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~------  674 (734)
                        ..++...              .+..|. |++++.       ..+.|||+|+.+++|.+++.+|.-..+.-..      
T Consensus       307 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~G  386 (430)
T 3tc9_A          307 TTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTSG  386 (430)
T ss_dssp             CCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSSS
T ss_pred             cceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCCc
Confidence              2233321              267899 899963       4689999999999999999887433333210      


Q ss_pred             --------CCCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875         675 --------PQTLSHPFSISTF--EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       675 --------~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~  706 (734)
                              ...+.+|.+|++.  ++.||++|+++++|+++.+
T Consensus       387 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence                    0136689999997  5899999999999998864

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.83  E-value=7.1e-21  Score=156.84  Aligned_cols=78  Identities=41%  Similarity=1.082  Sum_probs=72.4

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcc-cccccCcccC-CceeccCCCCeeeCCCCCCCCCCCCCCCCCcC
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE-KKCQKRICGQ-EEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK  128 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de-~~C~~~~C~~-~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~  128 (734)
                      ..+|+ +.+|+|.+|+|||..|+|||..||.||||| .+|....|.+ .+|+|.+  |+||+..|+|||..||.|||||.
T Consensus         2 ~~~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~--g~CI~~~~~CDG~~DC~DgSDE~   78 (82)
T 2fyj_A            2 ARTCP-PNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNN--GRCININWRCDNDNDCGDNSDEA   78 (82)
T ss_dssp             CSSSC-TTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTT--SCEEETTCBSSSSBCCSSSSSCS
T ss_pred             CCCCC-CCceEeCCCCEEeccccCCCcccCCCccccccccccccCCCCCceECCC--CCeEcHHHccCCCCcCCCCcccc
Confidence            35788 899999999999999999999999999999 8998888965 8999987  68999999999999999999999


Q ss_pred             CCC
Q psy8875         129 SCK  131 (734)
Q Consensus       129 ~C~  131 (734)
                      +|.
T Consensus        79 ~C~   81 (82)
T 2fyj_A           79 GCS   81 (82)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            984

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=6.2e-19  Score=194.81  Aligned_cols=208  Identities=13%  Similarity=0.139  Sum_probs=162.4

Q ss_pred             CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCC----eEEEEe
Q psy8875         501 STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKN----TIELAN  575 (734)
Q Consensus       501 ~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~----~I~~~~  575 (734)
                      .+..|.+|++|+ ..+.||++|.. ++|++++++++ ..+.++ ..+..|.+||+|+.++.|||++...+    .|.+..
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~-~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~  211 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKE-YVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT  211 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTT-EEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCC-EEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence            467899999998 58999999987 89999999843 333444 36788999999988778999998533    566677


Q ss_pred             CCCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeEEEecCCCeEEEEe
Q psy8875         576 FEGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       576 ldG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~glavD~~~~~LYw~D  652 (734)
                      .+|...  ..+.  .+..|.+|++||..|+|||+|++ .++|+++++++.....+.. ....+|++|++|+.+++|||+|
T Consensus       212 ~~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d  288 (430)
T 3tc9_A          212 RESGFKVITELT--KGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV  288 (430)
T ss_dssp             GGGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeeec--cCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence            777654  3333  47899999999989999999986 4799999999876644443 3457899999998888899999


Q ss_pred             CCCCeEEEEecCCCc-----eEEEEcC------------CCCCCCCe-EEEEEC---------CEEEEEeCCCCceEEEe
Q psy8875         653 AKLNEISSCDYNGGN-----RRLVLYS------------PQTLSHPF-SISTFE---------DWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       653 ~~~~~I~~~~~dG~~-----~~~i~~~------------~~~~~~P~-gl~v~~---------~~lywtd~~~~~v~~~~  705 (734)
                      ...++|++++++|..     ..++...            ...+.+|. +|++.+         +.|||+|+.+++|++++
T Consensus       289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~  368 (430)
T 3tc9_A          289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT  368 (430)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred             CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence            999999999999752     2333321            12467899 899853         69999999999999998


Q ss_pred             ccCCCceEEE
Q psy8875         706 KFTGDNLTAI  715 (734)
Q Consensus       706 ~~~G~~~~~l  715 (734)
                      + +|...+++
T Consensus       369 ~-~G~v~~~~  377 (430)
T 3tc9_A          369 P-QGRVTTFA  377 (430)
T ss_dssp             T-TSEEEEEE
T ss_pred             C-CCcEEEEE
Confidence            4 67554444

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.82  E-value=4.8e-21  Score=156.53  Aligned_cols=75  Identities=48%  Similarity=1.195  Sum_probs=70.9

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc--CCC
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE--KSC  130 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de--~~C  130 (734)
                      +|+ +.+|+|.+|+||+..|+|||+.||.|||||.+|....|.+.+|+|.+  |+|||..|+|||..||.||+||  .+|
T Consensus         2 ~C~-~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~dgsDE~~~~C   78 (80)
T 2fcw_B            2 TCS-QAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQRC   78 (80)
T ss_dssp             CCC-TTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTT--SCEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             CCC-CCccCCCCCCEEeeecccCCcccCCCcccccccccccCCceeeECCC--CCEEecccccCCCcCCCCCCCcCcccC
Confidence            687 89999999999999999999999999999999987789999999987  6899999999999999999999  666

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.81  E-value=6.8e-18  Score=185.42  Aligned_cols=228  Identities=19%  Similarity=0.194  Sum_probs=173.3

Q ss_pred             cceeeeeec--cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC-cEEEEecCCCCceEEE--E-eCCCC
Q psy8875         474 HASLLFARK--HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK-KIYKAPIDEGSERTVV--I-EEDKT  547 (734)
Q Consensus       474 ~~~l~~~~~--~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~-~I~~~~l~~g~~~~~~--~-~~~~~  547 (734)
                      ...||+++.  +.|+++++++.....+......+. +++++..+.|||++...+ .|++++..++.....+  + .....
T Consensus       141 ~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~  219 (409)
T 3hrp_A          141 NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSG  219 (409)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCS
T ss_pred             CCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcC
Confidence            345677664  689999998877777766666677 999998999999998655 8999998855432222  1 22457


Q ss_pred             CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE----EcC-CCCCce-eEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL----VRS-YLDEPR-SLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l----~~~-~l~~P~-~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .|.+||+|+..++||+++. .++|+++++++....++    ... ....|. +|++||..++|||+|.. .++|++.+++
T Consensus       220 ~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-~~~I~~~~~~  297 (409)
T 3hrp_A          220 KIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-LSSVYKITPD  297 (409)
T ss_dssp             CCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-TTEEEEECTT
T ss_pred             CcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-CCEEEEEecC
Confidence            8999999988999999876 68999999987765554    211 123467 99999988999999965 5799999999


Q ss_pred             CCceEEEEEcC--------------CCCceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCC-----------
Q psy8875         622 GSHRNMVIVSD--------------IKWPNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSP-----------  675 (734)
Q Consensus       622 G~~~~~lv~~~--------------l~~P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~-----------  675 (734)
                      |.. .+++...              +.+|+||++|+. ++||++|+ ..++|.++++......+++...           
T Consensus       298 g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~  375 (409)
T 3hrp_A          298 GEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPL  375 (409)
T ss_dssp             CCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTT
T ss_pred             CCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChh
Confidence            973 3344332              678999999954 66999999 9999999995444445454320           


Q ss_pred             -CCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875         676 -QTLSHPFSISTF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       676 -~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~  706 (734)
                       ..+.+|.+|++. ++.||++|+.+++|+++..
T Consensus       376 ~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          376 EATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             ceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             126789999995 4999999999999998853

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.80  E-value=2.7e-18  Score=189.74  Aligned_cols=208  Identities=12%  Similarity=0.087  Sum_probs=156.2

Q ss_pred             CCcceEEEeeec--cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC----CeEEEE
Q psy8875         501 STKSATAIDFVF--RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----NTIELA  574 (734)
Q Consensus       501 ~~~~~~~i~~d~--~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~~I~~~  574 (734)
                      .+..|.+|++|+  ..+.|||+|.. ++|+++++.++.. +.++ ..+..|.+||+|+.++ |||++...    ..|.+.
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v-~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~  212 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYV-DIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLF  212 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEE-EEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEE
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEE-EEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEE
Confidence            467899999998  47999999987 8999999864433 3333 3677899999997766 99999853    235555


Q ss_pred             eCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE-cCCCCceeEEEecCCCeEEEE
Q psy8875         575 NFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV-SDIKWPNGLTLDLVQRRLYWV  651 (734)
Q Consensus       575 ~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~-~~l~~P~glavD~~~~~LYw~  651 (734)
                      ...+... ...+ ..+..|.+|++|+..|.|||+++. .++|++++++ |...+.++. ....++.+|++|+.+++|||+
T Consensus       213 ~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~-~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          213 TRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYH-HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             CGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTT-CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred             ECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECC-CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence            5554443 1222 257899999999989999999976 4799999998 554233333 345677899999888889999


Q ss_pred             eCCCCeEEEEecCCCc-----eEEEEcC------------CCCCCCCeEEEE----------ECCEEEEEeCCCCceEEE
Q psy8875         652 DAKLNEISSCDYNGGN-----RRLVLYS------------PQTLSHPFSIST----------FEDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       652 D~~~~~I~~~~~dG~~-----~~~i~~~------------~~~~~~P~gl~v----------~~~~lywtd~~~~~v~~~  704 (734)
                      |...++|+++++++..     ..+++..            ...+.+|.+|++          .++.|||+|+.+++|+++
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence            9999999999988532     2334321            124678999999          467999999999999999


Q ss_pred             eccCCCceEEE
Q psy8875         705 NKFTGDNLTAI  715 (734)
Q Consensus       705 ~~~~G~~~~~l  715 (734)
                      ++ +|...+++
T Consensus       371 ~~-~G~v~t~~  380 (433)
T 4hw6_A          371 TP-EGRVTTYA  380 (433)
T ss_dssp             CT-TSEEEEEE
T ss_pred             CC-CCCEEEEE
Confidence            86 67544444

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.78  E-value=1.5e-19  Score=148.94  Aligned_cols=75  Identities=48%  Similarity=1.147  Sum_probs=70.4

Q ss_pred             CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCc-CCCCCCCccc-ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875          92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDE-KSCKNRTCQA-SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus        92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de-~~C~~~~C~~-~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      .+|.+.+|+|.+  |+|||..|+|||..||.||||| .+|...+|.+ .+|+|.+|+||+..|+|||..||.|||||.+
T Consensus         3 ~~C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~   79 (82)
T 2fyj_A            3 RTCPPNQFSCAS--GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAG   79 (82)
T ss_dssp             SSSCTTEEETTS--SCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSC
T ss_pred             CCCCCCceEeCC--CCEEeccccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccC
Confidence            468899999987  6899999999999999999999 8998889965 8999999999999999999999999999987

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.78  E-value=5.7e-17  Score=179.08  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=172.7

Q ss_pred             ceeeeeec--cceEEeecCCCceEEEecC----CcceEEEee-------eccCCeEEEEEeCCC------cEEEEecCC-
Q psy8875         475 ASLLFARK--HDIRKISLDHHEMTAIVNS----TKSATAIDF-------VFRTGMIFWSDISEK------KIYKAPIDE-  534 (734)
Q Consensus       475 ~~l~~~~~--~~I~~i~l~~~~~~~l~~~----~~~~~~i~~-------d~~~~~lyw~d~~~~------~I~~~~l~~-  534 (734)
                      ..||++..  +.|++|++....++.++..    +.+|.+|+|       +...++||+++...+      .|+.+.... 
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            34555543  6799999998888877653    347999999       887778999998752      367775442 


Q ss_pred             CCceE----EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-------CCce-------------EEEEcCCCC
Q psy8875         535 GSERT----VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-------GTMR-------------KVLVRSYLD  590 (734)
Q Consensus       535 g~~~~----~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-------G~~~-------------~~l~~~~l~  590 (734)
                      |....    ..+. .+..|.+|++|+..++||+++...++|++++++       +...             .++......
T Consensus       232 G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          232 GTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             SCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             Cceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence            22210    2222 467899999999999999999999999999987       3322             223334456


Q ss_pred             CceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-----EEEEEc--------------CCCCce-eEEEec------C
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-----NMVIVS--------------DIKWPN-GLTLDL------V  644 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-----~~lv~~--------------~l~~P~-glavD~------~  644 (734)
                      .|.+||++|..++||++|++ +++|+++++||...     .+++..              .+..|. |+++|.      .
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~-~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~  389 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVIN-NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE  389 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred             CceEEEEcCCCCEEEEEeCC-CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence            89999999988889999975 58999999988652     333332              467899 888873      5


Q ss_pred             CCeEEEEeCCCCeEEEEecCCCceEEEEcCC---------------------CCCCCCeEEEEEC--CEEEEEeCCCCce
Q psy8875         645 QRRLYWVDAKLNEISSCDYNGGNRRLVLYSP---------------------QTLSHPFSISTFE--DWLYWSDWQQKAI  701 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~---------------------~~~~~P~gl~v~~--~~lywtd~~~~~v  701 (734)
                      .+.||++|+.+++|++++.+|. ..+++...                     ..+.+|.||++..  +.||++|..+++|
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence            7899999999999999998884 44444220                     1367899999974  8999999999999


Q ss_pred             EEEeccC
Q psy8875         702 YKANKFT  708 (734)
Q Consensus       702 ~~~~~~~  708 (734)
                      +++....
T Consensus       469 rki~~~~  475 (496)
T 3kya_A          469 RTISMEQ  475 (496)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9997643

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.78  E-value=2.9e-20  Score=151.91  Aligned_cols=74  Identities=47%  Similarity=1.106  Sum_probs=69.7

Q ss_pred             cccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875          93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus        93 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      +|.+.+|+|.+  |+|||..|+|||..||.|||||.+|...+|...+|+|.+|+|||..|+|||..||.|||||..
T Consensus         2 ~C~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~   75 (80)
T 2fcw_B            2 TCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   75 (80)
T ss_dssp             CCCTTEEECTT--SCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCCCCccCCCC--CCEEeeecccCCcccCCCcccccccccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCc
Confidence            58889999987  689999999999999999999999977789999999999999999999999999999999954

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.78  E-value=2.4e-17  Score=181.08  Aligned_cols=208  Identities=15%  Similarity=0.159  Sum_probs=160.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCC-eEEEEeCCCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKN-TIELANFEGT  579 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~-~I~~~~ldG~  579 (734)
                      .+..|.+|++++ .+.|||+|...++|++++++++.. ..+.. ....|. |++++.++.|||++...+ +|++++.++.
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~-~~~~~-~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKV-TTVHP-GFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEE-EEEEE-TCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEE-EEeec-cCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            467899999995 678999999889999999985433 33343 355677 999999999999998654 9999998876


Q ss_pred             ceEEEE----cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE----EcCC-CCce-eEEEecCCCeEE
Q psy8875         580 MRKVLV----RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI----VSDI-KWPN-GLTLDLVQRRLY  649 (734)
Q Consensus       580 ~~~~l~----~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv----~~~l-~~P~-glavD~~~~~LY  649 (734)
                      .....+    ......|.+|++||..|+||+++.  .++|++.++++....++.    .... ..|. +|++|+.+++||
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly  282 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFY  282 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence            543333    335688999999999999999884  478999999877655441    1111 2356 999998889999


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEcCC------------CCCCCCeEEEEE-CCEEEEEeC-CCCceEEEeccCCCceEEE
Q psy8875         650 WVDAKLNEISSCDYNGGNRRLVLYSP------------QTLSHPFSISTF-EDWLYWSDW-QQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG~~~~~i~~~~------------~~~~~P~gl~v~-~~~lywtd~-~~~~v~~~~~~~G~~~~~l  715 (734)
                      |+|...++|++++++|. ..+++...            ..+.+|.+|++. ++.||++|+ .+++|++++..+|...+++
T Consensus       283 v~d~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          283 MSDQNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             EEETTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence            99999999999999987 33343221            126789999995 578999999 9999999986677654444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=1.5e-16  Score=169.32  Aligned_cols=225  Identities=14%  Similarity=0.097  Sum_probs=167.8

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCC------------------------CcEEEEecCCCCceEEEEeCCCCCccceeeec
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISE------------------------KKIYKAPIDEGSERTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~------------------------~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~  556 (734)
                      .+..+.+|++++ .+.||+++...                        +.|++++.+.|..........+..|.+||+|+
T Consensus        22 ~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT
T ss_pred             ecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC
Confidence            467889999997 57899999876                        36888887655543333234567899999995


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCC--ceEEEE--------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGT--MRKVLV--------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~--~~~~l~--------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                       .++||+++...++|.+.+++|.  ....+.        ...+..|.+|++||..|.||++|.....+|.+.+.+|....
T Consensus       101 -~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~  179 (329)
T 3fvz_A          101 -DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVT  179 (329)
T ss_dssp             -TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEE
T ss_pred             -CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEE
Confidence             5669999999999999999997  344443        24567899999999889999999523589999999998766


Q ss_pred             EEEE---------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCE------
Q psy8875         627 MVIV---------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDW------  690 (734)
Q Consensus       627 ~lv~---------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~------  690 (734)
                      .+..         ..+..|.+|++|+.+++||++|...++|.+++++ |+..+.+.. ......|+++++..+.      
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g  258 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNG  258 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEEC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCC
Confidence            5532         2356799999998779999999999999999998 766665532 2233456666664444      


Q ss_pred             -EEEEeCCCCceEEEeccCCCceEEEec-ccccCCCccCC
Q psy8875         691 -LYWSDWQQKAIYKANKFTGDNLTAITG-VHQTHEPLNSP  728 (734)
Q Consensus       691 -lywtd~~~~~v~~~~~~~G~~~~~l~~-~~~l~~P~~i~  728 (734)
                       +|+++....+|+.++..+|+.+..+.. ...+..|.+|+
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia  298 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIV  298 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEE
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEE
Confidence             455555666888998888888777642 23466777764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.75  E-value=1.7e-16  Score=166.17  Aligned_cols=217  Identities=14%  Similarity=0.285  Sum_probs=164.6

Q ss_pred             ceeeeee---ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCCCce
Q psy8875         475 ASLLFAR---KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEGSER  538 (734)
Q Consensus       475 ~~l~~~~---~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g~~~  538 (734)
                      ..++|++   ...|+++.++|.+.+.|....  +..|.  +..+.||+++...             ..|++++++ |+.+
T Consensus        26 ~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~~--~~~i~--~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d-g~~~  100 (302)
T 3s25_A           26 GEVFFSNTNDNGRLYAMNIDGSNIHKLSNDT--AMYIN--ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN-GHGS  100 (302)
T ss_dssp             TEEEEEEGGGTTEEEEEETTSCSCEEEEEEE--EEEEE--ECSSEEEEEEECC------CCSSCCSEEEEEEETT-SCCC
T ss_pred             CEEEEEeCCCCceEEEEcCCCCCCEEccCCc--eeeEE--EcCCEEEEEECCCCcccccceeccCCCeEEEEeCC-CCcc
Confidence            4577765   567999999999988886542  33443  4489999997653             579999999 4555


Q ss_pred             EEEEeCCCCCccceeeeccCCcEEEEe---CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceE
Q psy8875         539 TVVIEEDKTIADGLAVDWIYSHIYWTD---AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKI  615 (734)
Q Consensus       539 ~~~~~~~~~~p~glAvD~~~~~lY~td---~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I  615 (734)
                      +.+.. ..    +.++.+..+.|||++   .....|++++++|+.++.|.....     ++++|..+.|||++.+ .+.|
T Consensus       101 ~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~~iy~t~~g-~~~I  169 (302)
T 3s25_A          101 TVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPK-NGQL  169 (302)
T ss_dssp             EEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETTEEEEECTT-TCCE
T ss_pred             eEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECCEEEEEeCC-CceE
Confidence            55543 22    334555689999999   567899999999999888886543     4568889999999974 5899


Q ss_pred             EEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE
Q psy8875         616 ERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS  694 (734)
Q Consensus       616 ~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt  694 (734)
                      ++++++|+.+++|+..    +..+++.|.++.|||+++.. .+|++++++|+++++|...  .+  | .+++.+++|||+
T Consensus       170 y~~~l~g~~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--~~--~-~~~~~g~~Iy~~  240 (302)
T 3s25_A          170 YRYDTASQSEALFYDC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--NI--E-HYNVYGSLIFYQ  240 (302)
T ss_dssp             EEEETTTTEEEEEECS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--CE--E-EEEEETTEEEEE
T ss_pred             EEEECCCCCEEEEeCC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--Cc--c-eEEECCCEEEEE
Confidence            9999999998877543    33345667899999999754 5899999999999887642  23  3 388899999997


Q ss_pred             -eCCCCceEEEeccCCCceEEEec
Q psy8875         695 -DWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       695 -d~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                       +.....|++++. +|..++.|..
T Consensus       241 ~~~~~~~i~~~~~-DG~~r~~l~~  263 (302)
T 3s25_A          241 RGGDNPALCVVKN-DGTGFKELAK  263 (302)
T ss_dssp             ECSSSCEEEEEET-TSCCCEEEEE
T ss_pred             ECCCCcEEEEEEC-CCCccEEeeC
Confidence             555678888864 7777777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=7e-17  Score=178.34  Aligned_cols=210  Identities=11%  Similarity=0.149  Sum_probs=158.0

Q ss_pred             CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceEEEEeC---CCCCccceee-------eccCCcEEEEeCCCC
Q psy8875         501 STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERTVVIEE---DKTIADGLAV-------DWIYSHIYWTDAHKN  569 (734)
Q Consensus       501 ~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~---~~~~p~glAv-------D~~~~~lY~td~~~~  569 (734)
                      .+..|.+|++|+ ..++||+++...++|+++++.++ ..+.++..   .+..|.+||+       |..++.||+++...+
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~  215 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-MLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG  215 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-EEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred             ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-EEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence            456899999998 58999999988889999999844 34444432   2457999999       977778999999752


Q ss_pred             ------eEEEEeC--CCCce-----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--------CCc----
Q psy8875         570 ------TIELANF--EGTMR-----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--------GSH----  624 (734)
Q Consensus       570 ------~I~~~~l--dG~~~-----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--------G~~----  624 (734)
                            .|.+++.  +|...     ..+.  .+.+|.+|++||..++||+++++ .++|++.+++        |..    
T Consensus       216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~-~g~V~r~d~~~~~~~~~tg~~~tp~  292 (496)
T 3kya_A          216 KGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPI  292 (496)
T ss_dssp             TGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETT-TTEEEEECHHHHHHHHHTTCCCCCB
T ss_pred             CcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECC-CCEEEEEecccccccccCceeeccc
Confidence                  3666643  33442     2333  46799999999999999999986 4789999987        332    


Q ss_pred             -------eEEEE-EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce-----EEEEcC------------CCCCC
Q psy8875         625 -------RNMVI-VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-----RLVLYS------------PQTLS  679 (734)
Q Consensus       625 -------~~~lv-~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~i~~~------------~~~~~  679 (734)
                             .+.++ .....+|.+|++|+.++.||++|+..++|+++++++...     .+++..            ...+.
T Consensus       293 ~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          293 VKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             GGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             ccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence                   12333 234578999999988888999999999999999988642     344432            12567


Q ss_pred             CCe-EEEEE--------CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         680 HPF-SISTF--------EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       680 ~P~-gl~v~--------~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +|. ++++.        ++.||++|+.+++|+++++ +|...+++
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~Tia  416 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYA  416 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEe
Confidence            899 78885        5799999999999999984 67544443

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=1.8e-15  Score=160.94  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=158.8

Q ss_pred             ceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-ceEEEE--------eCCCCCccce
Q psy8875         484 DIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-ERTVVI--------EEDKTIADGL  552 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-~~~~~~--------~~~~~~p~gl  552 (734)
                      .|++++.+...+....  ..+..|.+|++++ .+.||+++...++|+++++++.. ....+.        ...+..|.+|
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4777776543433322  2356899999996 56699999999999999987432 222221        2345689999


Q ss_pred             eeeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEc---------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-
Q psy8875         553 AVDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVR---------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-  621 (734)
Q Consensus       553 AvD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~---------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-  621 (734)
                      |+|+..++||+++. ..++|.+.+.+|.....+..         ..+..|.+|++|+..+.||+++++ ..+|.+.+++ 
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEECCC
Confidence            99987899999996 78999999999987776642         235679999999988999999976 4799999998 


Q ss_pred             CCceEEEEEc-CCCCceeEEEec-----CCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEE-CCEEEE
Q psy8875         622 GSHRNMVIVS-DIKWPNGLTLDL-----VQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTF-EDWLYW  693 (734)
Q Consensus       622 G~~~~~lv~~-~l~~P~glavD~-----~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~-~~~lyw  693 (734)
                      |.....+... ....|.++++.+     ..+++|+++....+|..+++... ...++......+..|.+|++. .+.||+
T Consensus       228 G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyv  307 (329)
T 3fvz_A          228 KEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYI  307 (329)
T ss_dssp             CCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEE
T ss_pred             CcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEE
Confidence            7655544322 123455555543     23445555566678999996544 344332223457789999994 569999


Q ss_pred             EeCCCCceEEEecc
Q psy8875         694 SDWQQKAIYKANKF  707 (734)
Q Consensus       694 td~~~~~v~~~~~~  707 (734)
                      +++.+++|++++..
T Consensus       308 ad~~~~~I~~~~~~  321 (329)
T 3fvz_A          308 GDAHTNTVWKFTLT  321 (329)
T ss_dssp             EESSSCCEEEEEEE
T ss_pred             EECCCCEEEEEeCC
Confidence            99999999998753

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=2.5e-16  Score=161.55  Aligned_cols=226  Identities=16%  Similarity=0.270  Sum_probs=164.1

Q ss_pred             eeee-e--eccceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         476 SLLF-A--RKHDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       476 ~l~~-~--~~~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      .+++ +  ....|++++..+.....+ ......|.+|++++ .+.||+++. .+.|+++++++ .....+....+..|.+
T Consensus        36 ~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~-~~~~~~~~~~~~~p~~  112 (270)
T 1rwi_B           36 NVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGS-NNQTVLPFDGLNYPEG  112 (270)
T ss_dssp             CEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTC-SCCEECCCCSCSSEEE
T ss_pred             CEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCC-ceEeeeecCCcCCCcc
Confidence            3555 3  345687777655443332 23446789999997 466999998 78999999874 3333332235578999


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      |++|+ .++||+++...++|.+.+.............+..|.+|++|+ .|.||+++.+ ...|.+.++++.........
T Consensus       113 i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~~~  189 (270)
T 1rwi_B          113 LAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLPFT  189 (270)
T ss_dssp             EEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECCCS
T ss_pred             eEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECC-CCEEEEEecCCCceEeeccc
Confidence            99996 567999998888999997654444333334567899999998 5679999964 47899999988765544445


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+..|.+|++|+ .++||+++...++|.+++.+|.....+..  ..+..|.+|++. .+.||++++++++|.++++...+
T Consensus       190 ~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~~~~~~--~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          190 DITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCCEECCC--CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcceeecc--CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            567899999995 45999999999999999998876654322  235789999995 57899999999999988765433

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.70  E-value=9.6e-16  Score=162.47  Aligned_cols=210  Identities=10%  Similarity=0.134  Sum_probs=156.1

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC------------------CCCCccceeeeccCCcEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE------------------DKTIADGLAVDWIYSHIY  562 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~------------------~~~~p~glAvD~~~~~lY  562 (734)
                      .+..|.+|++++. +.+||++...++|++++.+++....+....                  ....|.+|++|+..++||
T Consensus        17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            4678999999974 778889988999999988743333222211                  123689999997678999


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEEc----CCCCCceeEEEeCCCCeEEEEecCC----------------CceEEEeccCC
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDWGQ----------------NAKIERAGMDG  622 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~~----------------~~~I~~~~ldG  622 (734)
                      +++.. +.|.++++++...+++..    ..+..|++|++|+..|.||+++.+.                .++|++.+.++
T Consensus        96 v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            99986 458888888655555442    2356799999998568999999652                26799988876


Q ss_pred             CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC---ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC-
Q psy8875         623 SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG---NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ-  697 (734)
Q Consensus       623 ~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~---~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~-  697 (734)
                      ...+++. ..+..|+||++++.+++||++|...++|+++++++.   ..+++..   ... |.+|+++ +++||++++. 
T Consensus       175 ~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~  249 (322)
T 2fp8_A          175 KETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEE  249 (322)
T ss_dssp             TEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEE
T ss_pred             CEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCc
Confidence            5544443 457889999999878889999999999999999873   3444443   123 9999995 5789999987 


Q ss_pred             ---------CCceEEEeccCCCceEEEecc
Q psy8875         698 ---------QKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       698 ---------~~~v~~~~~~~G~~~~~l~~~  718 (734)
                               .+.|+++++ +|+.+..+...
T Consensus       250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~  278 (322)
T 2fp8_A          250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLP  278 (322)
T ss_dssp             TTSSTTSCEEEEEEEECT-TSCEEEEEECC
T ss_pred             ccccccCCCccEEEEECC-CCCEEEEEECC
Confidence                     577999987 57777777543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.69  E-value=4.4e-15  Score=153.96  Aligned_cols=220  Identities=13%  Similarity=0.178  Sum_probs=167.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----CCCCCccceeeeccCCcEEEEeCC-CCeEEEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----EDKTIADGLAVDWIYSHIYWTDAH-KNTIELA  574 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----~~~~~p~glAvD~~~~~lY~td~~-~~~I~~~  574 (734)
                      .+..|.+|++++ .+.||+++...++|++++++ +.....+..     ..+..|.+|+++...++||+++.. .++|.+.
T Consensus        28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            356899999996 46899999888999999887 443333221     124579999997678999999975 7899999


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeEEEecCCCeEEEEeC
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      +.+|.....+....+..|.+|++|+ .|.||+++.. ..+|.+.+.+|.....+.. ..+..|++|++|+ .++||+++.
T Consensus       106 d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~  182 (286)
T 1q7f_A          106 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDN  182 (286)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEG
T ss_pred             CCCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC-CCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEEC
Confidence            9888877666555667899999998 5689999864 4789999988876554432 3567899999995 678999999


Q ss_pred             CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC-ceEEEeccCCCceEEEecccccCCCccC
Q psy8875         654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK-AIYKANKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~-~v~~~~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      ..++|.+++.+|.....+.. ...+..|.+|++. .++||++++..+ .|.++++ +|+.+..+........|..+
T Consensus       183 ~~~~i~~~~~~g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          183 RAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV  256 (286)
T ss_dssp             GGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence            89999999998876655532 2335789999995 679999999886 8988875 67666666543223345454

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=1.1e-15  Score=156.63  Aligned_cols=214  Identities=19%  Similarity=0.264  Sum_probs=155.9

Q ss_pred             ceEEEeeeccCCeEEE-EEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         504 SATAIDFVFRTGMIFW-SDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw-~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      .|.+|++++ .+.||+ ++...+.|++++..++ ....+....+..|.+|++|+ .++||+++. .++|.+.+.++....
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~  100 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGST-GTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQT  100 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCE
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCc-ccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEe
Confidence            899999997 467999 8888889999887633 22222233456899999996 466999998 789999999988766


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEe
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCD  662 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~  662 (734)
                      .+....+..|.+|++|+ .|.||+++.+ .+.|.+.+.............+..|++|++|+ .++||+++...+.|.+++
T Consensus       101 ~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~  177 (270)
T 1rwi_B          101 VLPFDGLNYPEGLAVDT-QGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLE  177 (270)
T ss_dssp             ECCCCSCSSEEEEEECT-TCCEEEEEGG-GTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGGGTEEEEEC
T ss_pred             eeecCCcCCCcceEECC-CCCEEEEECC-CCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECCCCEEEEEe
Confidence            55445567899999998 6789999865 46888886544333333334566899999995 567999999889999999


Q ss_pred             cCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         663 YNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       663 ~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      .++........  ..+..|.+|++. .++||++++..+.|+++++. +.....+.. ..+..|.+++
T Consensus       178 ~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~-~~~~~p~~i~  240 (270)
T 1rwi_B          178 AESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTVLPF-TGLNTPLAVA  240 (270)
T ss_dssp             TTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTT-CSCCEECCC-CSCSCEEEEE
T ss_pred             cCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCC-CCcceeecc-CCCCCceeEE
Confidence            98876554332  235789999996 46999999999999999874 444333322 2245666653

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.68  E-value=2.7e-14  Score=148.25  Aligned_cols=243  Identities=14%  Similarity=0.221  Sum_probs=176.8

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      ..++++.  ...|.+++.+ ..+..+.  .....|.+|++++ .+.||+++...+.|++++.+ +......+......|.
T Consensus        31 g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~  107 (300)
T 2qc5_A           31 GKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPY  107 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCc
Confidence            3455554  3668888877 4444332  2346899999985 67899999878899999887 5544343333456799


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +|++| ..++||+++...+.|.+.+.+|......+......|.+|++|+ .|.||+++.+ ...|.+.+.+|......+.
T Consensus       108 ~i~~~-~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~  184 (300)
T 2qc5_A          108 GITEG-LNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ-NNSIGRITNTGKLEEYPLP  184 (300)
T ss_dssp             EEEEC-STTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEECS
T ss_pred             cceEC-CCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecC-CCeEEEECCCCcEEEeeCC
Confidence            99999 4688999998888999999997665444444577899999997 4679999864 4789999987765543333


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      .....|.+|++|+ .++||+++...+.|.+++.+|......+.  .....|.+|++. .++||+++...+.|.++++ +|
T Consensus       185 ~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  260 (300)
T 2qc5_A          185 TNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIP--TPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN  260 (300)
T ss_dssp             STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECS--STTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred             CCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECC--CCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence            4567899999995 67999999988999999997665443322  346789999995 6789999999899999987 56


Q ss_pred             CceEEEecccccCCCccCC
Q psy8875         710 DNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       710 ~~~~~l~~~~~l~~P~~i~  728 (734)
                      +... +........|.++.
T Consensus       261 ~~~~-~~~~~~~~~~~~i~  278 (300)
T 2qc5_A          261 TIQE-YQLQTENAEPHGIT  278 (300)
T ss_dssp             CEEE-EECCSTTCCCCCEE
T ss_pred             cEEE-EECCccCCccceeE
Confidence            5443 32222345566654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.68  E-value=2.6e-15  Score=157.24  Aligned_cols=208  Identities=15%  Similarity=0.171  Sum_probs=157.9

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...-+.+..|++..+.|||+|...++|++++++++.. ..+ . ....|.+|++++. ++||++.  ...|.++++++..
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~-~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~   84 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-T-MDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQS   84 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-E-CSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-e-CCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCc
Confidence            4557889999998999999999999999999985443 222 2 2357899999965 5588776  4689999987665


Q ss_pred             eEEEEcC----CCCCceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875         581 RKVLVRS----YLDEPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR  646 (734)
Q Consensus       581 ~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~  646 (734)
                      .+.+...    ....|++|++|+ .|+||+++.+          ....|++.+.+|....  +...+..|+||++++.++
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~--~~~~~~~pngi~~spdg~  161 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK--YFDQVDISNGLDWSLDHK  161 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--EEEEESBEEEEEECTTSC
T ss_pred             EEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE--EeeccccccceEEcCCCC
Confidence            5555432    234689999998 5779998743          2358999988875443  335677899999998888


Q ss_pred             eEEEEeCCCCeEEEEecC---CC--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         647 RLYWVDAKLNEISSCDYN---GG--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       647 ~LYw~D~~~~~I~~~~~d---G~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .|||++...++|++++++   |.  +++++.........|.+|+++ +++||++.+..++|+++++.+|+.+..+..
T Consensus       162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            999999999999999875   32  234454332234579999994 689999999989999999988988777754

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.67  E-value=3.7e-14  Score=146.96  Aligned_cols=223  Identities=12%  Similarity=0.099  Sum_probs=165.4

Q ss_pred             eeeeee--ccceEEeecCCCceEEEec------CCcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVN------STKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDK  546 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~------~~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~  546 (734)
                      .++++.  ...|+++++++.....+..      .+..|.+|+++...+.||+++.. .+.|++++.+ +.....+....+
T Consensus        42 ~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g~~~~~~~~~~~  120 (286)
T 1q7f_A           42 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATIL  120 (286)
T ss_dssp             CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTC
T ss_pred             CEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-CcEEEEecCccC
Confidence            455553  4568888877654444422      23578999997678999999965 7889998865 443333322345


Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR  625 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~  625 (734)
                      ..|.+|++|+ .++||+++...++|.+.+.+|.....+.. ..+..|.+|++|+ .|.||+++.. ...|.+.+.+|...
T Consensus       121 ~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~  197 (286)
T 1q7f_A          121 QHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQYL  197 (286)
T ss_dssp             SCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCEE
T ss_pred             CCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-CCEEEEEcCCCCEE
Confidence            6899999996 56799999988999999999877665543 4567899999998 5789999964 47899999988755


Q ss_pred             EEEEEc-CCCCceeEEEecCCCeEEEEeCCCC-eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceE
Q psy8875         626 NMVIVS-DIKWPNGLTLDLVQRRLYWVDAKLN-EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIY  702 (734)
Q Consensus       626 ~~lv~~-~l~~P~glavD~~~~~LYw~D~~~~-~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~  702 (734)
                      ..+... .+..|.+|++|+ .++||+++...+ +|.+++.+|...+.+... .....|.+|++. .++||+++. .++|.
T Consensus       198 ~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~-~~~~~~~~i~~~~~g~l~vs~~-~~~v~  274 (286)
T 1q7f_A          198 RQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESK-VKHAQCFDVALMDDGSVVLASK-DYRLY  274 (286)
T ss_dssp             EEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEES-SCCSCEEEEEEETTTEEEEEET-TTEEE
T ss_pred             EEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEccc-CCCCcceeEEECCCCcEEEECC-CCeEE
Confidence            444322 257899999995 679999998886 999999998877666542 234568899995 679999986 46666


Q ss_pred             EEe
Q psy8875         703 KAN  705 (734)
Q Consensus       703 ~~~  705 (734)
                      .++
T Consensus       275 v~~  277 (286)
T 1q7f_A          275 IYR  277 (286)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.66  E-value=9.6e-15  Score=154.76  Aligned_cols=219  Identities=11%  Similarity=0.105  Sum_probs=159.8

Q ss_pred             ccceEEeecCCCceEEEec--------------------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE
Q psy8875         482 KHDIRKISLDHHEMTAIVN--------------------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV  541 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~--------------------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~  541 (734)
                      ...|++++.++..+..+..                    ....|.+|++++..+.||+++... .|++++++++.. +.+
T Consensus        39 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~-~i~~~d~~~g~~-~~~  116 (322)
T 2fp8_A           39 DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYY-HLSVVGSEGGHA-TQL  116 (322)
T ss_dssp             TSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTT-EEEEECTTCEEC-EEE
T ss_pred             CCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCC-CEEEEeCCCCEE-EEe
Confidence            4578888777655554431                    124689999997678999999764 488888774332 222


Q ss_pred             Ee----CCCCCccceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCC
Q psy8875         542 IE----EDKTIADGLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPI  600 (734)
Q Consensus       542 ~~----~~~~~p~glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~  600 (734)
                      ..    ..+..|.+|++|+..++||+++..                 .++|++.+.++...+++. ..+..|.+|++++.
T Consensus       117 ~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~p~gia~~~d  195 (322)
T 2fp8_A          117 ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL-KELHVPGGAEVSAD  195 (322)
T ss_dssp             ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE-EEESCCCEEEECTT
T ss_pred             cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec-cCCccCcceEECCC
Confidence            21    124568999999646799999975                 267999988765554444 45778999999998


Q ss_pred             CCeEEEEecCCCceEEEeccCCC---ceEEEEEcCCCCceeEEEecCCCeEEEEeCC----------CCeEEEEecCCCc
Q psy8875         601 DGWMYWSDWGQNAKIERAGMDGS---HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK----------LNEISSCDYNGGN  667 (734)
Q Consensus       601 ~g~LYwtd~~~~~~I~~~~ldG~---~~~~lv~~~l~~P~glavD~~~~~LYw~D~~----------~~~I~~~~~dG~~  667 (734)
                      .++||+++.. ..+|++.++++.   ..+++..  +..|.||++|. .++||+++..          .++|.+++.+|..
T Consensus       196 g~~lyv~d~~-~~~I~~~~~~~~~~~~~~~~~~--~~gP~gi~~d~-~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~  271 (322)
T 2fp8_A          196 SSFVLVAEFL-SHQIVKYWLEGPKKGTAEVLVK--IPNPGNIKRNA-DGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNI  271 (322)
T ss_dssp             SSEEEEEEGG-GTEEEEEESSSTTTTCEEEEEE--CSSEEEEEECT-TSCEEEEEEEETTSSTTSCEEEEEEEECTTSCE
T ss_pred             CCEEEEEeCC-CCeEEEEECCCCcCCccceEEe--CCCCCCeEECC-CCCEEEEecCcccccccCCCccEEEEECCCCCE
Confidence            7789999975 479999999863   3344443  22399999995 6689999865          5689999998876


Q ss_pred             eEEEEcCCC-CCCCCeEEEEECCEEEEEeCCCCceEEEecc
Q psy8875         668 RRLVLYSPQ-TLSHPFSISTFEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       668 ~~~i~~~~~-~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~  707 (734)
                      .+.+..... .+..|.+++..+++||+++..++.|.+++..
T Consensus       272 ~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          272 LEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             EEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             EEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecc
Confidence            666553221 2567888888999999999999999999754

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.64  E-value=9.6e-14  Score=143.96  Aligned_cols=227  Identities=17%  Similarity=0.252  Sum_probs=167.4

Q ss_pred             ceeeeeec--cceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         475 ASLLFARK--HDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~~--~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      ..++++..  ..|.+++++ ..+..+.  .....|.+|++++ .+.||+++...+.|++++++ +....+.+......|.
T Consensus        26 g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  102 (299)
T 2z2n_A           26 GKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPY  102 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCce
Confidence            34555553  568888877 4444433  2356789999986 67899998878889999887 4433333333456899


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +|++|+ .++||+++...+.|.+.+++|.............|.+|++|+ .|.||+++.. ...|.+.+.+|......+.
T Consensus       103 ~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~  179 (299)
T 2z2n_A          103 GITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ-NNAIGRITESGDITEFKIP  179 (299)
T ss_dssp             EEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTTCCEEEEECS
T ss_pred             eeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC-CCEEEEEcCCCcEEEeeCC
Confidence            999995 678999998888999999977665554444567899999997 5799999854 4789999886654443233


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      .....|.+|++|+ .++||+++...+.|.+++.+|.... +. .......|.+|++. +++||++++..+.|.++++ +|
T Consensus       180 ~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g  255 (299)
T 2z2n_A          180 TPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITE-FK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NN  255 (299)
T ss_dssp             STTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEE-EE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TT
T ss_pred             CCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEE-EE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CC
Confidence            4567799999995 4779999988899999999655333 32 22345689999995 6789999998899999987 56


Q ss_pred             Cc
Q psy8875         710 DN  711 (734)
Q Consensus       710 ~~  711 (734)
                      +.
T Consensus       256 ~~  257 (299)
T 2z2n_A          256 II  257 (299)
T ss_dssp             EE
T ss_pred             ce
Confidence            43

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=6.1e-14  Score=145.52  Aligned_cols=220  Identities=15%  Similarity=0.217  Sum_probs=164.2

Q ss_pred             eeeeeec--cceEEeecCCCceEEEe-c-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         476 SLLFARK--HDIRKISLDHHEMTAIV-N-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       476 ~l~~~~~--~~I~~i~l~~~~~~~l~-~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      .++++..  ..|.+++.++ ....+. + ....|.+|++++ .+.||+++...+.|++++++ +......+......|.+
T Consensus        74 ~l~v~~~~~~~v~~~d~~g-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           74 DIWFTENGANKIGKLSKKG-GFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             CEEEEETTTTEEEEECTTS-CEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             CEEEEecCCCeEEEECCCC-CeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            4555543  5688888774 333332 2 346789999995 67899999878899999887 55444433335678999


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      |++|+ .++||+++...+.|.+.+.+|..........+..|.+|++|+ .|.||+++.. ...|.+.+.+|......+..
T Consensus       151 i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~  227 (300)
T 2qc5_A          151 ITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM-GNKIGRITTTGEISEYDIPT  227 (300)
T ss_dssp             EEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEECSS
T ss_pred             EEECC-CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccC-CCEEEEEcCCCcEEEEECCC
Confidence            99995 466999999889999999987766544445567899999997 6799999964 46899999877655443334


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~  706 (734)
                      ....|.+|++|. .++||+++...+.|.+++.+|......+  ......|.+|++. .+.||+++. + .|.++++
T Consensus       228 ~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          228 PNARPHAITAGK-NSEIWFTEWGANQIGRITNDNTIQEYQL--QTENAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             TTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEEC--CSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCceEEEECC-CCCEEEeccCCCeEEEECCCCcEEEEEC--CccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            567899999995 4779999988899999999765443222  2235679999995 688999998 5 8888875

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=1.7e-13  Score=145.55  Aligned_cols=224  Identities=15%  Similarity=0.140  Sum_probs=161.6

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCccceeeecc
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIADGLAVDWI  557 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p~glAvD~~  557 (734)
                      ...|..+++........++....|.+|++++. ++||+++...+.|.++++..+.....+....    ...|.+|+++  
T Consensus        63 ~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--  139 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRITGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--  139 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--
T ss_pred             CCEEEEEECcccEEEEEcCCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--
Confidence            35688888876665444466788999999764 5999999778899999987544332222111    1279999994  


Q ss_pred             CCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC---------CceEEEeccCCCceEE
Q psy8875         558 YSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ---------NAKIERAGMDGSHRNM  627 (734)
Q Consensus       558 ~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~---------~~~I~~~~ldG~~~~~  627 (734)
                      .++||+++++ .++|.+.++........+. ....|.+|++++ .|+||++..+.         ...|.++++.......
T Consensus       140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~-~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~  217 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDTETDKVVDELT-IGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK  217 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEETTTTEEEEEEE-CSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCEEEEEECCCCeEEEEEE-cCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEE
Confidence            8999999984 8899999987544332232 245799999997 57899998653         3689999886443322


Q ss_pred             EEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE--EEEcCCCCCCCCeEEEEE--CCEEEEEe----CCC
Q psy8875         628 VIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR--LVLYSPQTLSHPFSISTF--EDWLYWSD----WQQ  698 (734)
Q Consensus       628 lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~i~~~~~~~~~P~gl~v~--~~~lywtd----~~~  698 (734)
                      .+. .....|++|++++.+++||+++.   .|+++++......  .++.  .....|.+|++.  +++||+++    +..
T Consensus       218 ~~~~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~--~~~~~p~gi~vdp~~g~lyva~~~~y~~~  292 (328)
T 3dsm_A          218 QFKFKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLE--FRDTKYYGLTVNPNNGEVYVADAIDYQQQ  292 (328)
T ss_dssp             EEECCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBC--CCSSCEEEEEECTTTCCEEEEECTTSSSE
T ss_pred             EEecCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeec--CCCCceEEEEEcCCCCeEEEEcccccccC
Confidence            222 22347999999988999999986   8999998654431  1111  114679999994  79999999    788


Q ss_pred             CceEEEeccCCCceEEEe
Q psy8875         699 KAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       699 ~~v~~~~~~~G~~~~~l~  716 (734)
                      +.|.+++.. |+.+..+.
T Consensus       293 ~~V~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          293 GIVYRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEEEEECTT-CCEEEEEE
T ss_pred             CEEEEECCC-CCEEEEEE
Confidence            999999886 88777664

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.62  E-value=1e-13  Score=144.65  Aligned_cols=214  Identities=16%  Similarity=0.145  Sum_probs=161.0

Q ss_pred             ecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC
Q psy8875         489 SLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK  568 (734)
Q Consensus       489 ~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~  568 (734)
                      ...+..++.+......+.+++|++..+.|||++...+.|++++++++  ...+ ......|.+|++|+ .++||+++...
T Consensus        14 ~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~-~~~~~~~~~l~~~~-dg~l~v~~~~~   89 (296)
T 3e5z_A           14 FPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPE-MHPSHHQNGHCLNK-QGHLIACSHGL   89 (296)
T ss_dssp             SCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEE-ESSCSSEEEEEECT-TCCEEEEETTT
T ss_pred             cCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEE-ECCCCCcceeeECC-CCcEEEEecCC
Confidence            33455667777778889999999988789999999999999999854  3333 33456799999996 57799999888


Q ss_pred             CeEEEEeC-CCCceEEEEc----CCCCCceeEEEeCCCCeEEEEecC----------------CCceEEEeccCCCceEE
Q psy8875         569 NTIELANF-EGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG----------------QNAKIERAGMDGSHRNM  627 (734)
Q Consensus       569 ~~I~~~~l-dG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~----------------~~~~I~~~~ldG~~~~~  627 (734)
                      +.|.+.++ +|... .+..    .....|.+|++|+ .|.||++|..                ....|++.+.+|..+  
T Consensus        90 ~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~--  165 (296)
T 3e5z_A           90 RRLERQREPGGEWE-SIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS--  165 (296)
T ss_dssp             TEEEEECSTTCCEE-EEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE--
T ss_pred             CeEEEEcCCCCcEE-EEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEE--
Confidence            89999999 56543 3332    1245789999998 6889998741                135899998885433  


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCc---eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCce
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGN---RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAI  701 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~---~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v  701 (734)
                      .+...+..|+||++++.++.| |++...++|++++++  |.-   ++++ .  .....|.+|++. +++||++.  .+.|
T Consensus       166 ~~~~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~--~~~~~p~~i~~d~~G~l~v~~--~~~v  239 (296)
T 3e5z_A          166 APIRDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-T--VEPGKTDGLRVDAGGLIWASA--GDGV  239 (296)
T ss_dssp             EEECCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-C--CSSSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred             EeecCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-e--CCCCCCCeEEECCCCCEEEEc--CCeE
Confidence            344678889999999777777 999999999999985  332   3333 2  345679999994 68899998  5789


Q ss_pred             EEEeccCCCceEEEec
Q psy8875         702 YKANKFTGDNLTAITG  717 (734)
Q Consensus       702 ~~~~~~~G~~~~~l~~  717 (734)
                      .++++. |+.+..+..
T Consensus       240 ~~~~~~-g~~~~~~~~  254 (296)
T 3e5z_A          240 HVLTPD-GDELGRVLT  254 (296)
T ss_dssp             EEECTT-SCEEEEEEC
T ss_pred             EEECCC-CCEEEEEEC
Confidence            999874 776666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.61  E-value=5.5e-14  Score=147.86  Aligned_cols=212  Identities=11%  Similarity=-0.012  Sum_probs=150.4

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC--CeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK--NTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~--~~I~~~~ldG~~  580 (734)
                      ..|.++++++ .+.|||+|...++|++++.+ +... .++. ....|.+|++++. ++||+++...  .+|.+++.....
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~-g~~~-~~~~-~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQQ-IHAT-VEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEE-EEEE-CSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCC-CceE-EEEe-CCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCe
Confidence            6789999997 57799999999999999988 4332 2333 2357999999955 6699999764  358887654333


Q ss_pred             eEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE----------EcCCCCceeEEEecCCCeEE
Q psy8875         581 RKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI----------VSDIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       581 ~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv----------~~~l~~P~glavD~~~~~LY  649 (734)
                      .+.+. ......|.++++. ..+.+|+++.. .++|++.+.++...++..          ...+..|+||  ++.+++||
T Consensus       107 ~~~~~~~~~~~~~~g~~~~-~~~~~~v~d~~-~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPL-SDTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEEECTTCSCEEEEEES-SSSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEEeCCCccccCccccc-CCCcEEEEECC-CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            33333 2345678899875 46789999964 479999998764322221          1245689999  44588999


Q ss_pred             EEeCCCCeEEEEecCC--C--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCC
Q psy8875         650 WVDAKLNEISSCDYNG--G--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEP  724 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG--~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P  724 (734)
                      ++|...++|+++++++  .  .++++..    +..|.+|++. +++||++++.+++|.++++ +|+...+......+..|
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~----~~~P~gi~vd~dG~l~va~~~~~~V~~~~~-~G~~~~~~~~~~~~~~p  257 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVE----QTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGS  257 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE----SCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTE
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEec----cCCCCCeEECCCCCEEEEeCCCCeEEEECC-CCCEEEEeecccccCCc
Confidence            9999999999999885  2  2444432    3679999995 6899999999999999987 46543332222224566


Q ss_pred             ccCC
Q psy8875         725 LNSP  728 (734)
Q Consensus       725 ~~i~  728 (734)
                      ..++
T Consensus       258 ~~~a  261 (306)
T 2p4o_A          258 TAVA  261 (306)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.61  E-value=2.6e-13  Score=140.64  Aligned_cols=224  Identities=13%  Similarity=0.157  Sum_probs=161.8

Q ss_pred             eeeeee--ccceEEeecCCCceEEEe-c-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIV-N-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~-~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      .++++.  ...|.+++.++. ...+. + ....|.+|++++ .+.||+++...+.|++++++ +....+........|.+
T Consensus        69 ~l~v~~~~~~~i~~~~~~g~-~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           69 EVWFTENAANKIGRITKKGI-IKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSF  145 (299)
T ss_dssp             CEEEEETTTTEEEEECTTSC-EEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEE
T ss_pred             CEEEeCCCCCeEEEECCCCc-EEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCce
Confidence            455554  346888887643 33332 2 456789999996 57899998878899999884 55444433334567999


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      |++|. .++||+++...+.|.+.+++|......+......|.+|++|+. |.||+++.. ...|.+.+.+|......+..
T Consensus       146 i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~-~~~i~~~~~~g~~~~~~~~~  222 (299)
T 2z2n_A          146 ITLGS-DNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGND-DALWFVEII-GNKIGRITTSGEITEFKIPT  222 (299)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTT-SSEEEEETT-TTEEEEECTTCCEEEEECSS
T ss_pred             EEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCC-CCEEEEccC-CceEEEECCCCcEEEEECCC
Confidence            99995 5799999988899999999766554434455778999999975 789999864 46899998866543322233


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      ....|.+|++|+ .++||+++...+.|.+++.+|..+ .+. .......|.+|++.++.||+++. .+.|.++++.++
T Consensus       223 ~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~-~~~-~~~~~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          223 PNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIE-EYP-IQIKSAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             TTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEE-EEE-CSSSSCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCceeEEECC-CCCEEEeccCCceEEEECCCCceE-EEe-CCCCCCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            457899999995 577999998889999999976432 222 12335679999997789999987 578888876554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=2.6e-13  Score=142.47  Aligned_cols=214  Identities=21%  Similarity=0.337  Sum_probs=159.8

Q ss_pred             CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCe
Q psy8875         491 DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNT  570 (734)
Q Consensus       491 ~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~  570 (734)
                      .+..++.+......+.+++|++..+.|||++...++|++++.+ +.. +++.. ....|.+|++|+ .++||+++...++
T Consensus        33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~-~~~~~~gl~~d~-dG~l~v~~~~~~~  108 (305)
T 3dr2_A           33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLD-ATAFTNGNAVDA-QQRLVHCEHGRRA  108 (305)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEE-SCSCEEEEEECT-TSCEEEEETTTTE
T ss_pred             CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeC-CCCccceeeECC-CCCEEEEECCCCE
Confidence            4556777888888899999999888899999999999999885 443 33332 446799999996 5679999988889


Q ss_pred             EEEEeCCCCceEEEEc----CCCCCceeEEEeCCCCeEEEEec--C--------------CCceEEEeccCCCceEEEEE
Q psy8875         571 IELANFEGTMRKVLVR----SYLDEPRSLALNPIDGWMYWSDW--G--------------QNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       571 I~~~~ldG~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~--~--------------~~~~I~~~~ldG~~~~~lv~  630 (734)
                      |.+.+.+|+.. ++..    ..+..|++|++|+ .|.||+||.  +              ....|++.+.++...+.+. 
T Consensus       109 v~~~~~~g~~~-~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-  185 (305)
T 3dr2_A          109 ITRSDADGQAH-LLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-  185 (305)
T ss_dssp             EEEECTTSCEE-EEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-
T ss_pred             EEEECCCCCEE-EEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-
Confidence            99999987644 3332    1246789999997 688999873  1              1257999988544444343 


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCC-----CeEEEEecCCCc---eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCce
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKL-----NEISSCDYNGGN---RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAI  701 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~-----~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v  701 (734)
                       .+..|+||++++.++.|||++...     ++|+++++++..   .+++...  ....|.+|+++ +++||++.+  +.|
T Consensus       186 -~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~lwv~~~--~gv  260 (305)
T 3dr2_A          186 -DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWLWSSSG--TGV  260 (305)
T ss_dssp             -EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCEEECCS--SEE
T ss_pred             -cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCEEEecC--CcE
Confidence             677899999998888999999874     799999987642   3344332  34578999994 677887773  469


Q ss_pred             EEEeccCCCceEEEec
Q psy8875         702 YKANKFTGDNLTAITG  717 (734)
Q Consensus       702 ~~~~~~~G~~~~~l~~  717 (734)
                      +++++ +|+.+..+..
T Consensus       261 ~~~~~-~g~~~~~~~~  275 (305)
T 3dr2_A          261 CVFDS-DGQLLGHIPT  275 (305)
T ss_dssp             EEECT-TSCEEEEEEC
T ss_pred             EEECC-CCCEEEEEEC
Confidence            99987 6777666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.57  E-value=6.3e-13  Score=139.72  Aligned_cols=213  Identities=11%  Similarity=0.135  Sum_probs=150.8

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      .||+++  ...|++++.++. ...+......|.+|++++. ++||+++....  +|++++...+....+........+.+
T Consensus        44 ~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g  121 (306)
T 2p4o_A           44 TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNG  121 (306)
T ss_dssp             CEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEE
T ss_pred             CEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCc
Confidence            466665  467999988874 3334444568999999974 66999997643  58888766555433322234456778


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE-E---------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL-V---------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l-~---------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      +++ |..+++|+++...++|++.+.++...++. .         ...+..|++|  ++..++||+++.. ..+|++.+++
T Consensus       122 ~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-~~~I~~~~~~  197 (306)
T 2p4o_A          122 ITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-KMLLLRIPVD  197 (306)
T ss_dssp             EEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-TTEEEEEEBC
T ss_pred             ccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-CCEEEEEEeC
Confidence            886 57788999999889999999876432222 1         1345689998  5557899999975 4799999987


Q ss_pred             C--C--ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-----CCEEE
Q psy8875         622 G--S--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-----EDWLY  692 (734)
Q Consensus       622 G--~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-----~~~ly  692 (734)
                      +  .  .++++..  +..|.||++|. +++||+++...++|.+++.+|.... +......+..|.++++.     .++||
T Consensus       198 ~~g~~~~~~~~~~--~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~~~-~~~~~~~~~~p~~~a~~g~~~d~~~Ly  273 (306)
T 2p4o_A          198 STDKPGEPEIFVE--QTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTI-IAQAEQGVIGSTAVAFGQTEGDCTAIY  273 (306)
T ss_dssp             TTSCBCCCEEEEE--SCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEE-EECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CCCCCCccEEEec--cCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCEEE-EeecccccCCceEEEEecccCCCCEEE
Confidence            5  2  2333332  46799999995 5689999999999999999875433 22211235789999985     37999


Q ss_pred             EEeCCC
Q psy8875         693 WSDWQQ  698 (734)
Q Consensus       693 wtd~~~  698 (734)
                      +++.+.
T Consensus       274 Vt~~~~  279 (306)
T 2p4o_A          274 VVTNGG  279 (306)
T ss_dssp             EEECTT
T ss_pred             EECCCC
Confidence            999864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.55  E-value=1.8e-13  Score=146.94  Aligned_cols=211  Identities=18%  Similarity=0.198  Sum_probs=149.4

Q ss_pred             CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE----EeCCCCCccceeeecc---CCcEEEEe
Q psy8875         493 HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV----IEEDKTIADGLAVDWI---YSHIYWTD  565 (734)
Q Consensus       493 ~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~----~~~~~~~p~glAvD~~---~~~lY~td  565 (734)
                      ...+.++..+..|.+|++++ .++||+++.. ++|+++. + +....+.    ...+...|.|||+++.   ++.||+++
T Consensus        21 ~~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~-g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~   96 (352)
T 2ism_A           21 LRVEEVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-E-GRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR   96 (352)
T ss_dssp             CCEEEEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-T-TEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             cEEEEEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-C-CCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence            35667777899999999997 4679999865 8999988 4 4332221    1124568999999987   78999998


Q ss_pred             CCC-----CeEEEEeCCCC---ceEEEEc------CCCCCceeEEEeCCCCeEEEEecC------------CCceEEEec
Q psy8875         566 AHK-----NTIELANFEGT---MRKVLVR------SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIERAG  619 (734)
Q Consensus       566 ~~~-----~~I~~~~ldG~---~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~~~  619 (734)
                      ...     .+|.++++++.   ..++++.      .....|.+|+++| .|+||+++..            ..++|.|++
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~  175 (352)
T 2ism_A           97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLT  175 (352)
T ss_dssp             EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEEC
T ss_pred             ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEc
Confidence            754     78999988764   2334432      2346789999998 5799999731            126899999


Q ss_pred             cCCCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe--------EEEEecCCCc------------
Q psy8875         620 MDGSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE--------ISSCDYNGGN------------  667 (734)
Q Consensus       620 ldG~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~--------I~~~~~dG~~------------  667 (734)
                      .+|+.            ...++...+..|.||++|+.+++||++|...+.        |.++.. |.+            
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~-G~nyGwp~~~g~~~~  254 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVP-GGNYGWPRVVGRGND  254 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECT-TCBCCTTTCCSCCCC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEecc-CCcCCCCcccCCCCC
Confidence            99831            222445578889999999878999999977665        555543 221            


Q ss_pred             ---eEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         668 ---RRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       668 ---~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                         ...++.- .....|.||++..+.||++++..++|+++....+.
T Consensus       255 ~~~~~p~~~~-~~~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~~  299 (352)
T 2ism_A          255 PRYRDPLYFW-PQGFPPGNLAFFRGDLYVAGLRGQALLRLVLEGER  299 (352)
T ss_dssp             TTSCCCSEEC-TTCCCEEEEEEETTEEEEEETTTTEEEEEEEEEET
T ss_pred             CCCcCCeEec-CCCCCCcceEEECCEEEEEECCCCEEEEEEECCCC
Confidence               0111111 11246899999999999999999999999765443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.54  E-value=3.7e-12  Score=135.25  Aligned_cols=230  Identities=11%  Similarity=0.102  Sum_probs=169.9

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC--------Ccccee
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT--------IADGLA  553 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~--------~p~glA  553 (734)
                      ...|+.+++........+.....+.++++++..+.||+++...+.|+.+++..+.....+......        .|.+++
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV  147 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred             CccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence            346888888766655555545668889999888889999988899999998865543333221111        278899


Q ss_pred             eeccCCcEEEEeC-CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-
Q psy8875         554 VDWIYSHIYWTDA-HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-  631 (734)
Q Consensus       554 vD~~~~~lY~td~-~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-  631 (734)
                      +++.++.||+++. ..++|.+.++........+......|.+++++|..++||+++.  .+.|.+.++........+.. 
T Consensus       148 ~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          148 ADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA--DGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT--TSEEEEEETTTTEEEEEEECC
T ss_pred             ECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC--CCeEEEEECCCCeEEEEEEcC
Confidence            9998899999984 4678999999766555555434556999999999999999984  46888888765443333332 


Q ss_pred             ---CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEec
Q psy8875         632 ---DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       632 ---~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~  706 (734)
                         ....|.+|++++.+++||+++...+.|..+++........+.    +..|.++++  .+++||+++...+.|..++.
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA----APESLAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE----CSSCCCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE----cCCCceEEECCCCCEEEEEECCCCeEEEEEC
Confidence               234578899999999999999888999999986554433333    244667777  45679999998899999998


Q ss_pred             cCCCceEEEec
Q psy8875         707 FTGDNLTAITG  717 (734)
Q Consensus       707 ~~G~~~~~l~~  717 (734)
                      .+++.+..+..
T Consensus       302 ~~~~~~~~~~~  312 (353)
T 3vgz_A          302 KSYKVVKTFDT  312 (353)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCeEEEEEec
Confidence            88887766653

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.49  E-value=1.5e-12  Score=139.82  Aligned_cols=207  Identities=16%  Similarity=0.195  Sum_probs=149.1

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-----eCCCCCccceeeecc---CCcEEEEe
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWI---YSHIYWTD  565 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-----~~~~~~p~glAvD~~---~~~lY~td  565 (734)
                      .++.++..+..|.+|++++ .++||+++.. ++|++++.+ |.  +.+.     ..+...|.|||+++.   ++.||+++
T Consensus        20 ~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~-G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           20 KISEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPS-GK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSS-CE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCC-Cc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            4556677889999999997 5789999876 899998754 43  3332     224567999999987   79999998


Q ss_pred             CC---C----CeEEEEeCCCC-----ceEEEEc----CCCCCceeEEEeCCCCeEEEEecC------------CCceEEE
Q psy8875         566 AH---K----NTIELANFEGT-----MRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG------------QNAKIER  617 (734)
Q Consensus       566 ~~---~----~~I~~~~ldG~-----~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~------------~~~~I~~  617 (734)
                      ..   .    .+|.++++++.     ..++|+.    .....|.+|+++| .|+||++.-.            ..++|.|
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence            63   3    68999988765     2334432    2345789999998 6799999621            1258999


Q ss_pred             eccCCC--------ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe---EEEEecCCCc---------------eEEE
Q psy8875         618 AGMDGS--------HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE---ISSCDYNGGN---------------RRLV  671 (734)
Q Consensus       618 ~~ldG~--------~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~---I~~~~~dG~~---------------~~~i  671 (734)
                      ++.||+        ..+ ++...+..|.||++|+.+++||++|...+.   |..+.. |.+               ...+
T Consensus       174 i~~dG~~p~~npf~~~~-i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~  251 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSP-IWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPV  251 (354)
T ss_dssp             ECTTSCCCTTSSSTTCC-EEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCS
T ss_pred             EcCCCCCCCCCCCCCCc-EEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCE
Confidence            999997        333 445678899999999878999999987654   554432 321               0111


Q ss_pred             EcCCCCCCCCeEEEE--------ECCEEEEEeCCCCceEEEeccC
Q psy8875         672 LYSPQTLSHPFSIST--------FEDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       672 ~~~~~~~~~P~gl~v--------~~~~lywtd~~~~~v~~~~~~~  708 (734)
                      +.-......|.||++        ..+.||++++..++|+++....
T Consensus       252 ~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          252 IDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             EECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             eecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            111012346899999        5789999999999999998654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.48  E-value=1.3e-12  Score=136.78  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=155.4

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEE-------EeCCCcEEEEecCCCCceEEEEe---CCCCCccceeeeccCCcEEE
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWS-------DISEKKIYKAPIDEGSERTVVIE---EDKTIADGLAVDWIYSHIYW  563 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~-------d~~~~~I~~~~l~~g~~~~~~~~---~~~~~p~glAvD~~~~~lY~  563 (734)
                      ....+...+..|.+++|+ ..+.|||+       +...+.|+++++..+....+...   .....|.+|++|+.+++||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v   87 (314)
T 1pjx_A            9 LFTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CCEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             hHhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE
Confidence            344566778899999999 57799999       77778899998765544332210   02256899999976589999


Q ss_pred             EeCCCCeEEEEeCCCCceEEE-Ec----CCCCCceeEEEeCCCCeEEEEecCC--------------CceEEEeccCCCc
Q psy8875         564 TDAHKNTIELANFEGTMRKVL-VR----SYLDEPRSLALNPIDGWMYWSDWGQ--------------NAKIERAGMDGSH  624 (734)
Q Consensus       564 td~~~~~I~~~~ldG~~~~~l-~~----~~l~~P~~iavD~~~g~LYwtd~~~--------------~~~I~~~~ldG~~  624 (734)
                      ++.. ..|.+.+++|.. ..+ ..    .....|.+|++|+ .|.||+++.+.              ...|++.+.+|..
T Consensus        88 ~~~~-~~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  164 (314)
T 1pjx_A           88 ADMR-LGLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM  164 (314)
T ss_dssp             EETT-TEEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred             EECC-CCEEEEeCCCCE-EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE
Confidence            9875 489999988543 333 21    1234689999998 57899998643              2589999888653


Q ss_pred             eEEEEEcCCCCceeEEEe----cCCCeEEEEeCCCCeEEEEecCCCc----eEEEEcCCCCC-CCCeEEEEE-CCEEEEE
Q psy8875         625 RNMVIVSDIKWPNGLTLD----LVQRRLYWVDAKLNEISSCDYNGGN----RRLVLYSPQTL-SHPFSISTF-EDWLYWS  694 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD----~~~~~LYw~D~~~~~I~~~~~dG~~----~~~i~~~~~~~-~~P~gl~v~-~~~lywt  694 (734)
                      .. + ...+..|++|+++    +.+++|||++...++|.++++++..    .+.+....... ..|.+|++. .++||++
T Consensus       165 ~~-~-~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          165 IQ-V-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EE-E-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             EE-e-ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE
Confidence            33 2 2345679999998    7777999999988999999876321    22333222222 568999995 5899999


Q ss_pred             eCCCCceEEEeccCCCceEEEe
Q psy8875         695 DWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       695 d~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++..+.|+++++.+|+.+..+.
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEE
T ss_pred             EcCCCEEEEEcCCCCcEeEEEe
Confidence            9888899999987787766664

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=1.1e-11  Score=131.19  Aligned_cols=216  Identities=17%  Similarity=0.181  Sum_probs=157.2

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC----C
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----N  569 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~  569 (734)
                      .+..+......+.+++|++ .+.|||++...+.|++++++++....+. ......|.+|++|+. ++||++....    +
T Consensus        36 ~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~i~~~~d-g~l~v~~~~~~~~~~  112 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPF-VSHKANPAAIKIHKD-GRLFVCYLGDFKSTG  112 (333)
T ss_dssp             EEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEE-ECSSSSEEEEEECTT-SCEEEEECTTSSSCC
T ss_pred             eeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEe-eCCCCCcceEEECCC-CcEEEEeCCCCCCCc
Confidence            3444555666789999996 5679999988899999998855443333 223467999999954 6899998765    6


Q ss_pred             eEEEEeCCCCceEEEEc--CCCCCceeEEEeCCCCeEEEEecCC-----CceEEEeccCCCceEEEEEcCCCCceeEEEe
Q psy8875         570 TIELANFEGTMRKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQ-----NAKIERAGMDGSHRNMVIVSDIKWPNGLTLD  642 (734)
Q Consensus       570 ~I~~~~ldG~~~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~-----~~~I~~~~ldG~~~~~lv~~~l~~P~glavD  642 (734)
                      .|.+.++++...+.++.  .....|.+|++|+ .|.||+++...     ...|++.+.++...+.+. ..+..|++|+++
T Consensus       113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~  190 (333)
T 2dg1_A          113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALS  190 (333)
T ss_dssp             EEEEECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEEC
T ss_pred             eEEEEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEEC
Confidence            89999998877654443  2345799999998 57899988531     368999998875544443 345679999999


Q ss_pred             cCCCeEEEEeCCCCeEEEEecC--CCceEE-----EEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         643 LVQRRLYWVDAKLNEISSCDYN--GGNRRL-----VLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       643 ~~~~~LYw~D~~~~~I~~~~~d--G~~~~~-----i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      +.+++||+++...+.|++++++  |.....     +... .....|.+|++. +++||++++..+.|+++++ +|+.+..
T Consensus       191 ~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~  268 (333)
T 2dg1_A          191 TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYF-TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQ  268 (333)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEEC-CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEE
T ss_pred             CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEec-CCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEE
Confidence            8777899999888899999984  443322     1111 112468899995 5789999988889999987 6766666


Q ss_pred             Ee
Q psy8875         715 IT  716 (734)
Q Consensus       715 l~  716 (734)
                      +.
T Consensus       269 ~~  270 (333)
T 2dg1_A          269 IL  270 (333)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.47  E-value=1.1e-14  Score=126.96  Aligned_cols=88  Identities=43%  Similarity=1.054  Sum_probs=42.8

Q ss_pred             CCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCC
Q psy8875         377 PLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVA  456 (734)
Q Consensus       377 ~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~  456 (734)
                      ..+|.+.  .|++|||...+++|++.|++++++|+|.|++||.+. +++.|++||||..+.+|.++|+|+.++|.|.|++
T Consensus        19 ~~~~~~~--~Cd~neC~~~~~~C~~~C~n~~g~y~C~C~~Gy~g~-~g~~C~dideC~~~~~C~~~C~n~~gsy~C~C~~   95 (107)
T 2w2n_E           19 ENLYFQG--AMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLV-AQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEE   95 (107)
T ss_dssp             -CCCCSC--CBSCCGGGTGGGGCSSEEECCSBSCEEECCTTCEEE-TTTEEEC---------------------------
T ss_pred             CCCcCCC--CCcCccCcCCCCCCCCEeEeCCCCeEEECCCCcccc-CCCccccccccCCCCCcCCeeecCCCCEEEECCC
Confidence            4455544  589999998778999999999999999999999986 7889999999987678999999999999999999


Q ss_pred             CeeeCCCCCccc
Q psy8875         457 GYIKDPHHPTQC  468 (734)
Q Consensus       457 gy~~~~~~~t~C  468 (734)
                      ||.++.+.++ |
T Consensus        96 Gy~~~~d~~~-C  106 (107)
T 2w2n_E           96 GFQLDPHTKA-C  106 (107)
T ss_dssp             ------------
T ss_pred             CceECCCCCc-c
Confidence            9999877655 5

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=3.5e-12  Score=136.28  Aligned_cols=215  Identities=14%  Similarity=0.055  Sum_probs=147.8

Q ss_pred             cceEEEeeeccCCeEEEEEeC--CC--cEEEEecCCCCceEEEE-------eCCCCCccceeeeccCCcEEEEeCC----
Q psy8875         503 KSATAIDFVFRTGMIFWSDIS--EK--KIYKAPIDEGSERTVVI-------EEDKTIADGLAVDWIYSHIYWTDAH----  567 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~--~~--~I~~~~l~~g~~~~~~~-------~~~~~~p~glAvD~~~~~lY~td~~----  567 (734)
                      ..|.+|++++ .++||++...  .+  +|.+++ + +..  ..+       ...+..|.+|++|+. ++|||+|.+    
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~-g~~--~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~   90 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-Q-DGL--IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSK   90 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-T-TEE--EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHT
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-C-CCe--ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcC
Confidence            5789999986 5789998642  23  677776 3 321  111       124678999999965 789999987    


Q ss_pred             -CCeEEEEeCC-CCceEEEEcC-----CCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCceEEEEEc-------
Q psy8875         568 -KNTIELANFE-GTMRKVLVRS-----YLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSHRNMVIVS-------  631 (734)
Q Consensus       568 -~~~I~~~~ld-G~~~~~l~~~-----~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~~~~lv~~-------  631 (734)
                       ..+|.+.++. |+..+.+...     ....|++|+||+..+++|++|.+  ....|.+.+++......++..       
T Consensus        91 ~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~  170 (343)
T 2qe8_A           91 SVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPE  170 (343)
T ss_dssp             SCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred             CCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccc
Confidence             5799999987 4434444321     12467999999988999999962  346888888763322222211       


Q ss_pred             -------C---------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecC----CC--ce------EEEEcCCCC
Q psy8875         632 -------D---------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN----GG--NR------RLVLYSPQT  677 (734)
Q Consensus       632 -------~---------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d----G~--~~------~~i~~~~~~  677 (734)
                             .               ...|+||++++.+++||+++...++|++++.+    +.  ..      ..+-    .
T Consensus       171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~  246 (343)
T 2qe8_A          171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS----E  246 (343)
T ss_dssp             SCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----E
T ss_pred             ccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc----c
Confidence                   0               12479999999888999999988899999853    21  11      1111    1


Q ss_pred             CCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         678 LSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       678 ~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      ...|.||+++ ++.||++++..++|.++++.+|+...++. ...+.+|.+++
T Consensus       247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va  297 (343)
T 2qe8_A          247 KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFN  297 (343)
T ss_dssp             CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEE
T ss_pred             CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeE
Confidence            3479999994 68999999999999999975676444433 33466777664

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.44  E-value=2.3e-11  Score=129.04  Aligned_cols=216  Identities=12%  Similarity=0.057  Sum_probs=152.2

Q ss_pred             cceEEeecCCCceEEEe-------cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee
Q psy8875         483 HDIRKISLDHHEMTAIV-------NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD  555 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~-------~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD  555 (734)
                      ..|..++.....+...+       .-...+.+|+++  .++||++....+.|.++++..+.....+ . ....|.+|+++
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i-~-~~~~p~~i~~~   92 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRI-T-GFTSPRYIHFL   92 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEE-E-CCSSEEEEEEE
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEc-C-CCCCCcEEEEe
Confidence            45666666544433211       011357788886  7899999988899999998865543433 3 56789999997


Q ss_pred             ccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCC----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         556 WIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSY----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       556 ~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +. ++||+++...++|.+.++...... .+....    ...|.+|++  ..++||+++++....|.++++........+.
T Consensus        93 ~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           93 SD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             ET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             CC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            55 599999976789999998765443 232222    228999999  4789999998645789999887544333333


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCC----------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKL----------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ  698 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~----------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~  698 (734)
                      . -..|++|++|+ .++||++....          +.|.+++.........+.. ....+|.+|++.  +++||+++.  
T Consensus       170 ~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--  244 (328)
T 3dsm_A          170 I-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--  244 (328)
T ss_dssp             C-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--
T ss_pred             c-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--
Confidence            2 35699999984 67899998765          7899999875544322321 113479999996  789999886  


Q ss_pred             CceEEEeccCCCc
Q psy8875         699 KAIYKANKFTGDN  711 (734)
Q Consensus       699 ~~v~~~~~~~G~~  711 (734)
                       .|++++..+++.
T Consensus       245 -~v~~~d~~t~~~  256 (328)
T 3dsm_A          245 -DIWRMPVEADRV  256 (328)
T ss_dssp             -SEEEEETTCSSC
T ss_pred             -EEEEEECCCCce
Confidence             899999877765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=6e-11  Score=123.42  Aligned_cols=218  Identities=11%  Similarity=0.113  Sum_probs=156.4

Q ss_pred             eeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---CCCCCccc
Q psy8875         477 LLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---EDKTIADG  551 (734)
Q Consensus       477 l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~~~~~p~g  551 (734)
                      |+++.  ...|+++++++. ...+......|.+|++++ .+.||+++...+.|+++++..|....+...   .....|.+
T Consensus        42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  119 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND  119 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred             EEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence            45543  467888988877 666655667799999997 567999987778999999864554333211   12346889


Q ss_pred             eeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCce
Q psy8875         552 LAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK  614 (734)
Q Consensus       552 lAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~  614 (734)
                      |++|+ .++||+++..                 .+.|++++.+|... .+ ...+..|.+|+++|....| |++.. ..+
T Consensus       120 i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~-~~-~~~~~~~~gi~~s~dg~~l-v~~~~-~~~  194 (296)
T 3e5z_A          120 VCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLS-AP-IRDRVKPNGLAFLPSGNLL-VSDTG-DNA  194 (296)
T ss_dssp             EEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEE-EE-ECCCSSEEEEEECTTSCEE-EEETT-TTE
T ss_pred             EEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCEE-Ee-ecCCCCCccEEECCCCCEE-EEeCC-CCe
Confidence            99995 6789998751                 35899998885543 33 3667889999999977777 99864 478


Q ss_pred             EEEeccC--CCc---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--
Q psy8875         615 IERAGMD--GSH---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--  687 (734)
Q Consensus       615 I~~~~ld--G~~---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--  687 (734)
                      |++.+++  |..   .+++ ......|.+|++| .+++||++.  .+.|.+++.+|.....+...   .. |..+++.  
T Consensus       195 i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d-~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~---~~-~~~~~f~~~  266 (296)
T 3e5z_A          195 THRYCLNARGETEYQGVHF-TVEPGKTDGLRVD-AGGLIWASA--GDGVHVLTPDGDELGRVLTP---QT-TSNLCFGGP  266 (296)
T ss_dssp             EEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEB-TTSCEEEEE--TTEEEEECTTSCEEEEEECS---SC-CCEEEEEST
T ss_pred             EEEEEECCCCcCcCCCeEe-eCCCCCCCeEEEC-CCCCEEEEc--CCeEEEECCCCCEEEEEECC---CC-ceeEEEECC
Confidence            9998885  443   3333 4445679999999 566899998  67999999998766655432   23 8888884  


Q ss_pred             -CCEEEEEeCCCCceEEEeccCCCc
Q psy8875         688 -EDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       688 -~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                       ++.||++..  +.|++++..+.+.
T Consensus       267 d~~~L~v~t~--~~l~~~~~~~~~~  289 (296)
T 3e5z_A          267 EGRTLYMTVS--TEFWSIETNVRGL  289 (296)
T ss_dssp             TSCEEEEEET--TEEEEEECSCCBC
T ss_pred             CCCEEEEEcC--CeEEEEEcccccc
Confidence             247999875  4799998765543

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=7.1e-12  Score=133.92  Aligned_cols=195  Identities=17%  Similarity=0.232  Sum_probs=140.1

Q ss_pred             CCcceEEEeeeccCCeEEEEEeC-----CCcEEEEecCCCCceEEE-EeCC----CCCccceeeeccCCcEEEEeC---C
Q psy8875         501 STKSATAIDFVFRTGMIFWSDIS-----EKKIYKAPIDEGSERTVV-IEED----KTIADGLAVDWIYSHIYWTDA---H  567 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~-----~~~I~~~~l~~g~~~~~~-~~~~----~~~p~glAvD~~~~~lY~td~---~  567 (734)
                      .+..|.+|++|+. ++|||+|..     ..+|+++++..+.....+ +...    ...|.+|+||+..+++|++|.   .
T Consensus        65 ~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           65 TFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             ceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            3578999999974 889999976     578999998855433222 2211    235789999988899999998   7


Q ss_pred             CCeEEEEeCC-CCceEEEEcC-----------------------------CCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875         568 KNTIELANFE-GTMRKVLVRS-----------------------------YLDEPRSLALNPIDGWMYWSDWGQNAKIER  617 (734)
Q Consensus       568 ~~~I~~~~ld-G~~~~~l~~~-----------------------------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~  617 (734)
                      .+.|.+.++. |+..+++ ..                             -...|.||+++|....||+++.. ..+|++
T Consensus       144 ~~~i~v~d~~~g~~~r~~-~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-~~~l~~  221 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVL-QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-STSMYR  221 (343)
T ss_dssp             GCEEEEEETTTCCEEEEC-TTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-CSEEEE
T ss_pred             CCeEEEEECCCCCEEEEe-cCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-CCeEEE
Confidence            8899999986 4433332 11                             01357999999988899999964 358998


Q ss_pred             eccC----CCc--eE----EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEec-CCCceEEEEcCCCCCCCCeEEEE
Q psy8875         618 AGMD----GSH--RN----MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY-NGGNRRLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       618 ~~ld----G~~--~~----~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl~v  686 (734)
                      ++.+    +..  .+    +........|.||++|. +++||++++..++|.+++. +|. ..+++.. ..+.+|.+|++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~-~~~~~~~-~~~~~p~~va~  298 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK-DHNIYVGDLAHSAIGVITSADRA-YKLLVTD-EKLSWTDSFNF  298 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTE-EEEEEEC-GGGSCEEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccCCCCceEEECC-CCCEEEEccCCCeEEEEECCCCC-EEEEEEC-CceecCCeeEE
Confidence            8642    211  00    01112234799999995 6899999999999999999 765 4445443 24788999999


Q ss_pred             -ECCEEEEEeCCCCce
Q psy8875         687 -FEDWLYWSDWQQKAI  701 (734)
Q Consensus       687 -~~~~lywtd~~~~~v  701 (734)
                       .+++||+++...+++
T Consensus       299 ~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          299 GSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             CTTSCEEEEECCGGGS
T ss_pred             CCCCcEEEEeCccccc
Confidence             468899999876655

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.43  E-value=6.8e-11  Score=125.45  Aligned_cols=213  Identities=14%  Similarity=0.129  Sum_probs=158.4

Q ss_pred             CcceEEEeeeccCCeEEEEEeC------CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875         502 TKSATAIDFVFRTGMIFWSDIS------EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN  575 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~------~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~  575 (734)
                      ...+.++++++..+.||+++..      .+.|+.+++..+.....+..  ...|.++++++.++.||+++...+.|.+.+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            3568899999988999999865      56899999885544333322  346999999998888999999889999999


Q ss_pred             CCCCce-EEEEcCCCC--------CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC
Q psy8875         576 FEGTMR-KVLVRSYLD--------EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR  646 (734)
Q Consensus       576 ldG~~~-~~l~~~~l~--------~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~  646 (734)
                      +..... ..+......        .|.+++++|..++||+++++....|++.++........+......|.++++++.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            865443 333322222        38999999999999999976667899999876544444432345699999999899


Q ss_pred             eEEEEeCCCCeEEEEecCCCceEEEEcC-C-CCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         647 RLYWVDAKLNEISSCDYNGGNRRLVLYS-P-QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       647 ~LYw~D~~~~~I~~~~~dG~~~~~i~~~-~-~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      +||+++. .+.|..+++........+.. . .....|.+|++.  +++||+++...+.|+.++..+++.+..+..
T Consensus       198 ~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~  271 (353)
T 3vgz_A          198 RLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA  271 (353)
T ss_dssp             EEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence            9999986 67899988765544433322 1 123456778884  678999999989999999988887777653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.43  E-value=7.1e-11  Score=119.55  Aligned_cols=204  Identities=8%  Similarity=0.102  Sum_probs=146.6

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-  581 (734)
                      ..+.||+|++..++||.+.-..++|+++++. |.....+.-.+...++|||++ ..+.+|+++...++|.+..++.... 
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCee
Confidence            5789999999889999877778999999998 554433333456789999998 4566778888888998887654332 


Q ss_pred             EEE--EcCCC-CCc-----eeEEEeCCCCeEEEEecCCCceEEEec--cCCCceEEEEE------cCCCCceeEEEecCC
Q psy8875         582 KVL--VRSYL-DEP-----RSLALNPIDGWMYWSDWGQNAKIERAG--MDGSHRNMVIV------SDIKWPNGLTLDLVQ  645 (734)
Q Consensus       582 ~~l--~~~~l-~~P-----~~iavD~~~g~LYwtd~~~~~~I~~~~--ldG~~~~~lv~------~~l~~P~glavD~~~  645 (734)
                      .++  +.-.+ ..|     .|||+||.+++||.+.......|++.+  +.+...+++-.      ..+..+.+|++|+.+
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t  184 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK  184 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence            111  11111 234     899999999999999865544788876  22222233211      135678999999999


Q ss_pred             CeEEEEeCCCCeEEEEecCCCceEEEEcCC------CCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCC
Q psy8875         646 RRLYWVDAKLNEISSCDYNGGNRRLVLYSP------QTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       646 ~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~------~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      ++||+.....+.|..++.+|.-+..+.-..      ..+.+|-||++ .++.||++.-. +.+|++.+..|
T Consensus       185 g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~~~~  254 (255)
T 3qqz_A          185 NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTPQSS  254 (255)
T ss_dssp             TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC---
T ss_pred             CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEecCC
Confidence            999999999999999999998555443221      13578999999 56889999655 68999877543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.43  E-value=2.6e-11  Score=128.56  Aligned_cols=211  Identities=15%  Similarity=0.204  Sum_probs=150.0

Q ss_pred             eEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875         495 MTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIEL  573 (734)
Q Consensus       495 ~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~  573 (734)
                      .+.+.. ....+.+++|++.++.|||++...+.|++++++++... .+ . ....|.+|++++. +++|++..  ..|.+
T Consensus        40 ~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~-~~~~v~~i~~~~d-g~l~v~~~--~gl~~  113 (326)
T 2ghs_A           40 GRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-A-LPFMGSALAKISD-SKQLIASD--DGLFL  113 (326)
T ss_dssp             CEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-E-CSSCEEEEEEEET-TEEEEEET--TEEEE
T ss_pred             eEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EE-E-CCCcceEEEEeCC-CeEEEEEC--CCEEE
Confidence            344444 23467899999988999999999999999998854322 22 2 2246889999854 67777763  56999


Q ss_pred             EeCCCCceEEEEcCC----CCCceeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875         574 ANFEGTMRKVLVRSY----LDEPRSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV  644 (734)
Q Consensus       574 ~~ldG~~~~~l~~~~----l~~P~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~  644 (734)
                      +++++...+.+....    ...|+++++|+ .|+||+++.+     ....|++.+ +|+.+.  +...+..|++|++++.
T Consensus       114 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~--~~~~~~~~~~i~~s~d  189 (326)
T 2ghs_A          114 RDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK--LFADISIPNSICFSPD  189 (326)
T ss_dssp             EETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE--EEEEESSEEEEEECTT
T ss_pred             EECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE--eeCCCcccCCeEEcCC
Confidence            998665555554321    24588999998 5678888753     136899988 654332  2344567999999988


Q ss_pred             CCeEEEEeCCCCeEEEEecC---C-C--ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         645 QRRLYWVDAKLNEISSCDYN---G-G--NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~d---G-~--~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +++|||++...+.|++++++   | .  .++++.........|.+|+++ ++.||++.++.+.|+++++ +|+.+..+.
T Consensus       190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            88999999988999999985   4 2  234443322234568999995 6789999988889999987 677666554

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.39  E-value=3.1e-11  Score=129.39  Aligned_cols=214  Identities=14%  Similarity=0.148  Sum_probs=144.7

Q ss_pred             eeeeec-cceEEeecCCCceEEE------ecCCcceEEEeeecc---CCeEEEEEeCC-----CcEEEEecCCCC--ceE
Q psy8875         477 LLFARK-HDIRKISLDHHEMTAI------VNSTKSATAIDFVFR---TGMIFWSDISE-----KKIYKAPIDEGS--ERT  539 (734)
Q Consensus       477 l~~~~~-~~I~~i~l~~~~~~~l------~~~~~~~~~i~~d~~---~~~lyw~d~~~-----~~I~~~~l~~g~--~~~  539 (734)
                      |+++.. ..|+++. ++. .+.+      ......|.+|++++.   ++.||+++...     .+|+|+.++++.  ..+
T Consensus        44 l~V~e~~g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~  121 (352)
T 2ism_A           44 MLIAERPGRIRLFR-EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDR  121 (352)
T ss_dssp             EEEEETTTEEEEEE-TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEE
T ss_pred             EEEEeCCCeEEEEE-CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceE
Confidence            555543 4677776 443 2222      124568999999987   78999998754     789999987432  122


Q ss_pred             EEEe------CCCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCCc------------eEEEEcCC
Q psy8875         540 VVIE------EDKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGTM------------RKVLVRSY  588 (734)
Q Consensus       540 ~~~~------~~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~~------------~~~l~~~~  588 (734)
                      +++.      .....|.+|++++ .++||+++..             .++|.+++.+|+.            ...++...
T Consensus       122 ~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G  200 (352)
T 2ism_A          122 VVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLG  200 (352)
T ss_dssp             EEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEEC
T ss_pred             EEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEc
Confidence            3332      2345688999996 4699999742             3689999999831            11233456


Q ss_pred             CCCceeEEEeCCCCeEEEEecCCCc-------eEEEeccCCC---------------ceEEEEEcCCCCceeEEEecCCC
Q psy8875         589 LDEPRSLALNPIDGWMYWSDWGQNA-------KIERAGMDGS---------------HRNMVIVSDIKWPNGLTLDLVQR  646 (734)
Q Consensus       589 l~~P~~iavD~~~g~LYwtd~~~~~-------~I~~~~ldG~---------------~~~~lv~~~l~~P~glavD~~~~  646 (734)
                      +.+|.+|++||..|.||+++.+...       .|.++...+.               ...++.......|.||++  ..+
T Consensus       201 ~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~--~~G  278 (352)
T 2ism_A          201 HRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF--FRG  278 (352)
T ss_dssp             CSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE--ETT
T ss_pred             CCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE--ECC
Confidence            7889999999988999999987533       3666543220               011111122345899999  578


Q ss_pred             eEEEEeCCCCeEEEEecCCCc-------eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCC
Q psy8875         647 RLYWVDAKLNEISSCDYNGGN-------RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQ  698 (734)
Q Consensus       647 ~LYw~D~~~~~I~~~~~dG~~-------~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~  698 (734)
                      .||+++...++|.++++++..       ...++.   ....|.+|++ ..+.||++++..
T Consensus       279 ~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~---~~~rp~~v~~~pdG~lyv~~~~~  335 (352)
T 2ism_A          279 DLYVAGLRGQALLRLVLEGERGRWRVLRVETALS---GFGRLREVQVGPDGALYVTTSNR  335 (352)
T ss_dssp             EEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE---SSCCEEEEEECTTSCEEEEECST
T ss_pred             EEEEEECCCCEEEEEEECCCCcceeecchheecc---cCCCeeEEEECCCCcEEEEEeCC
Confidence            999999999999999988654       233332   2568999999 467999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.39  E-value=8.1e-11  Score=126.20  Aligned_cols=223  Identities=11%  Similarity=0.111  Sum_probs=152.4

Q ss_pred             eeeeeec-cceEEeecCCCceEEEe------cCCcceEEEeeecc---CCeEEEEEeC---C----CcEEEEecCCCC--
Q psy8875         476 SLLFARK-HDIRKISLDHHEMTAIV------NSTKSATAIDFVFR---TGMIFWSDIS---E----KKIYKAPIDEGS--  536 (734)
Q Consensus       476 ~l~~~~~-~~I~~i~l~~~~~~~l~------~~~~~~~~i~~d~~---~~~lyw~d~~---~----~~I~~~~l~~g~--  536 (734)
                      .|+++.. ..|++++.++.  +.+.      .....+.+|++++.   ++.||+++..   .    .+|+|+.++++.  
T Consensus        41 ~l~V~e~~g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~  118 (354)
T 3a9g_A           41 RYLVTERPGRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK  118 (354)
T ss_dssp             EEEEEETTTEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC
T ss_pred             eEEEEeCCCEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC
Confidence            4555553 56777765554  3322      23567999999987   7899999864   3    689999887431  


Q ss_pred             --ceEEEEe----CCCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCC--------ceEEEEcCCC
Q psy8875         537 --ERTVVIE----EDKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGT--------MRKVLVRSYL  589 (734)
Q Consensus       537 --~~~~~~~----~~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~--------~~~~l~~~~l  589 (734)
                        ..++++.    .....+.+|++++ .++||++...             .++|.|++.+|+        ..+ ++...+
T Consensus       119 ~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~-i~a~G~  196 (354)
T 3a9g_A          119 LKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSP-IWSYGH  196 (354)
T ss_dssp             EEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCC-EEEECC
T ss_pred             cCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCc-EEEEcc
Confidence              1233322    2345688999996 5689999632             368999999987        223 344678


Q ss_pred             CCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCc---------------eEEEEE--cCCCCceeEEE-------ec
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSH---------------RNMVIV--SDIKWPNGLTL-------DL  643 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~---------------~~~lv~--~~l~~P~glav-------D~  643 (734)
                      .+|.+|++|+..|.||+++.+..  ..|.++.. |.+               ...++.  .....|.||++       + 
T Consensus       197 rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-  274 (354)
T 3a9g_A          197 RNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-  274 (354)
T ss_dssp             SCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-
T ss_pred             CCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-
Confidence            89999999998899999997643  24555543 221               011111  12345899999       4 


Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCc----eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC-CC---------ceEEEec
Q psy8875         644 VQRRLYWVDAKLNEISSCDYNGGN----RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ-QK---------AIYKANK  706 (734)
Q Consensus       644 ~~~~LYw~D~~~~~I~~~~~dG~~----~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~-~~---------~v~~~~~  706 (734)
                      ..+.||+++...++|.++++++..    ...++.  .....|.+|++. ++.||++++. .+         +|+|+.+
T Consensus       275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~--~~~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~  350 (354)
T 3a9g_A          275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFK--NVFGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS  350 (354)
T ss_dssp             GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECT--TTSCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred             cCCcEEEEEcCCCEEEEEEECCCCcccceeeecc--CCCCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence            578999999999999999998642    223332  235679999994 6799999984 44         7888754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.38  E-value=1e-10  Score=122.52  Aligned_cols=215  Identities=14%  Similarity=0.171  Sum_probs=150.3

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-C--CCCCcc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-E--DKTIAD  550 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~--~~~~p~  550 (734)
                      .|+|++  ...|+++..++. ...+......+.++++++ .++||+++...+.|++++++ |....+... .  .+..|.
T Consensus        58 ~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~  134 (305)
T 3dr2_A           58 TLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPN  134 (305)
T ss_dssp             EEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCC
T ss_pred             EEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCC
Confidence            356654  356888877543 445545556789999997 56799998877899999987 553332211 1  235688


Q ss_pred             ceeeeccCCcEEEEeCC-----------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC--
Q psy8875         551 GLAVDWIYSHIYWTDAH-----------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ--  611 (734)
Q Consensus       551 glAvD~~~~~lY~td~~-----------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~--  611 (734)
                      +|++|+ .++||+||..                 .+.|++++.++...+.+.  .+..|++|+++|....|||++...  
T Consensus       135 ~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          135 DLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             CEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            999995 6789998741                 357999988543333343  677899999999888899999642  


Q ss_pred             --CceEEEeccCCCc---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875         612 --NAKIERAGMDGSH---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       612 --~~~I~~~~ldG~~---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v  686 (734)
                        ..+|++.++++..   .+++.......|.||++| ..++||++.  .+.|.+++.+|.....+...    ..|..+++
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d-~~G~lwv~~--~~gv~~~~~~g~~~~~~~~~----~~~~~~~f  284 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD-RGGWLWSSS--GTGVCVFDSDGQLLGHIPTP----GTASNCTF  284 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC-TTSCEEECC--SSEEEEECTTSCEEEEEECS----SCCCEEEE
T ss_pred             CCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC-CCCCEEEec--CCcEEEECCCCCEEEEEECC----CceeEEEE
Confidence              2689998887542   233433345679999999 456687776  35799999988876666432    24778888


Q ss_pred             --ECCEEEEEeCCCCceEEEe
Q psy8875         687 --FEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       687 --~~~~lywtd~~~~~v~~~~  705 (734)
                        ..+.||++..  +.|++++
T Consensus       285 ~~d~~~L~it~~--~~l~~~~  303 (305)
T 3dr2_A          285 DQAQQRLFITGG--PCLWMLP  303 (305)
T ss_dssp             CTTSCEEEEEET--TEEEEEE
T ss_pred             eCCCCEEEEEcC--CeEEEEE
Confidence              4568988876  3677774

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.38  E-value=1e-10  Score=122.12  Aligned_cols=210  Identities=14%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIA  549 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p  549 (734)
                      .|+|++  ...|+++++++.....+ .....+.+|++++. +.||++.  ...|++++++++.. +.+...    ....|
T Consensus        26 ~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~d-G~l~v~~--~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~  100 (297)
T 3g4e_A           26 SLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQS-GGYVATI--GTKFCALNWKEQSA-VVLATVDNDKKNNRF  100 (297)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTT-SSEEEEE--TTEEEEEETTTTEE-EEEEECCTTCSSEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCC-CCEEEEE--CCeEEEEECCCCcE-EEEEecCCCCCCCCC
Confidence            466654  46788888887665433 33457889999875 4566664  56899999875443 333321    23457


Q ss_pred             cceeeeccCCcEEEEeC-----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEe
Q psy8875         550 DGLAVDWIYSHIYWTDA-----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERA  618 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~-----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~  618 (734)
                      .+|++|+ .++||+++.           ..+.|++++.+|....+  ...+..|++|+++|....|||++.. ..+|++.
T Consensus       101 ~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~--~~~~~~pngi~~spdg~~lyv~~~~-~~~i~~~  176 (297)
T 3g4e_A          101 NDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY--FDQVDISNGLDWSLDHKIFYYIDSL-SYSVDAF  176 (297)
T ss_dssp             EEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE--EEEESBEEEEEECTTSCEEEEEEGG-GTEEEEE
T ss_pred             CCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE--eeccccccceEEcCCCCEEEEecCC-CCcEEEE
Confidence            8899996 567999873           24578998888765442  2456789999999988899999964 4789998


Q ss_pred             ccC---CCc--eEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEEC--
Q psy8875         619 GMD---GSH--RNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFE--  688 (734)
Q Consensus       619 ~ld---G~~--~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~--  688 (734)
                      +++   |..  ++++..-  ....|.||++|. +++||++....++|.+++.+ |.....+..   ....|.++++.+  
T Consensus       177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~---p~~~~t~~~f~g~d  252 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKL---PVDKTTSCCFGGKN  252 (297)
T ss_dssp             EECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEEC---SSSBEEEEEEESGG
T ss_pred             eccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEEC---CCCCceEEEEeCCC
Confidence            864   332  2334332  235799999994 57999999888999999997 665555532   235788888853  


Q ss_pred             -CEEEEEeCCC
Q psy8875         689 -DWLYWSDWQQ  698 (734)
Q Consensus       689 -~~lywtd~~~  698 (734)
                       +.||+|....
T Consensus       253 ~~~L~vt~~~~  263 (297)
T 3g4e_A          253 YSEMYVTCARD  263 (297)
T ss_dssp             GCEEEEEEBCT
T ss_pred             CCEEEEEcCCc
Confidence             6899998754

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.36  E-value=1.4e-11  Score=132.12  Aligned_cols=215  Identities=10%  Similarity=0.087  Sum_probs=145.1

Q ss_pred             CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE------EeCCCCCccceeeecc---CCcEE
Q psy8875         492 HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV------IEEDKTIADGLAVDWI---YSHIY  562 (734)
Q Consensus       492 ~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~------~~~~~~~p~glAvD~~---~~~lY  562 (734)
                      +-..+.++..+..|.+|++++....||+++. .++|++++.+ +...+.+      ...+...|.+||+++.   ++.||
T Consensus         7 g~~~~~va~~l~~P~~i~~~pdG~~l~V~e~-~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY   84 (353)
T 2g8s_A            7 TVNVEVLQDKLDHPWALAFLPDNHGMLITLR-GGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW   84 (353)
T ss_dssp             CSEEEEEEEEESSEEEEEECSTTCCEEEEET-TTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred             CcEEEEEECCCCCcEEEEEcCCCCEEEEEeC-CceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence            3345566667889999999985433999986 5889998865 3221111      1123346789999985   89999


Q ss_pred             EEeCC-------CCeEEEEeCCCC-----ceEEEEcC------CCCCceeEEEeCCCCeEEEEecCC------------C
Q psy8875         563 WTDAH-------KNTIELANFEGT-----MRKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQ------------N  612 (734)
Q Consensus       563 ~td~~-------~~~I~~~~ldG~-----~~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~------------~  612 (734)
                      +++..       ..+|.++.+++.     ..++++..      ....|.+|+++| .|+||++....            .
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~  163 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQ  163 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCT
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCC
Confidence            99764       357888887643     34444421      235689999998 57999996221            3


Q ss_pred             ceEEEeccCCCc------------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCce---------
Q psy8875         613 AKIERAGMDGSH------------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGNR---------  668 (734)
Q Consensus       613 ~~I~~~~ldG~~------------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~~---------  668 (734)
                      ++|.|++.||+.            ...++...+..|.||++|+.+++||++|...+   +|.++.. |.+.         
T Consensus       164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~-G~nyGwp~~~~~~  242 (353)
T 2g8s_A          164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQK-GKNYGWPLATWGI  242 (353)
T ss_dssp             TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCT-TCBCCTTTBCSSB
T ss_pred             eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEecc-CCcCCCCCccCCC
Confidence            589999999972            22345567889999999987999999997643   4444322 2110         


Q ss_pred             ----EEE----------EcCC----CCCCCCeEEEEE--------CCEEEEEeCCCCceEEEeccCCC
Q psy8875         669 ----RLV----------LYSP----QTLSHPFSISTF--------EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       669 ----~~i----------~~~~----~~~~~P~gl~v~--------~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                          ..+          ...+    .....|.||+++        .+.||++++..++|+++...+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~  310 (353)
T 2g8s_A          243 NYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK  310 (353)
T ss_dssp             CTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred             CCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe
Confidence                000          0000    011358899995        48999999999999999876553

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.36  E-value=1e-10  Score=122.13  Aligned_cols=216  Identities=13%  Similarity=0.133  Sum_probs=150.9

Q ss_pred             ccceEEeecCCCceEEEec-----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCccce
Q psy8875         482 KHDIRKISLDHHEMTAIVN-----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIADGL  552 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p~gl  552 (734)
                      ...|+++++.......+..     ....|.+|++++..+.||+++... .|++++++ +....+....    ....|.+|
T Consensus        45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i  122 (314)
T 1pjx_A           45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDC  122 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCEE
T ss_pred             CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcCE
Confidence            4568888866555554433     235789999997558999988643 79999887 5433220211    12458899


Q ss_pred             eeeccCCcEEEEeCCC---------------CeEEEEeCCCCceEEEEcCCCCCceeEEEe----CCCCeEEEEecCCCc
Q psy8875         553 AVDWIYSHIYWTDAHK---------------NTIELANFEGTMRKVLVRSYLDEPRSLALN----PIDGWMYWSDWGQNA  613 (734)
Q Consensus       553 AvD~~~~~lY~td~~~---------------~~I~~~~ldG~~~~~l~~~~l~~P~~iavD----~~~g~LYwtd~~~~~  613 (734)
                      ++|+ .++||+++...               +.|++.+.+|+.... . ..+..|.+|+++    +..+.||+++.. ..
T Consensus       123 ~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~-~~  198 (314)
T 1pjx_A          123 AFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQV-D-TAFQFPNGIAVRHMNDGRPYQLIVAETP-TK  198 (314)
T ss_dssp             EECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEE-E-EEESSEEEEEEEECTTSCEEEEEEEETT-TT
T ss_pred             EECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEe-c-cCCCCcceEEEecccCCCCCEEEEEECC-CC
Confidence            9995 57899998764               689999888654332 2 345679999999    876689999864 47


Q ss_pred             eEEEeccC--CCce--EEEEEc--CC-CCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEE
Q psy8875         614 KIERAGMD--GSHR--NMVIVS--DI-KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSIS  685 (734)
Q Consensus       614 ~I~~~~ld--G~~~--~~lv~~--~l-~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~  685 (734)
                      +|++.+++  |...  .++...  .. ..|.+|++|. .++||+++...+.|.+++.+ |.....+..   ....|.+|+
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~i~  274 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRC---PFEKPSNLH  274 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEEC---SSSCEEEEE
T ss_pred             eEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeC---CCCCceeEE
Confidence            89888865  3211  122221  11 5699999994 67999999888899999988 665554432   236789999


Q ss_pred             EE-C-CEEEEEeCCCCceEEEecc
Q psy8875         686 TF-E-DWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       686 v~-~-~~lywtd~~~~~v~~~~~~  707 (734)
                      +. . .+||+++...+.|++++..
T Consensus       275 ~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          275 FKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEECS
T ss_pred             ECCCCCEEEEEeCCCCeEEEEeCC
Confidence            83 3 4599999888899998764

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.36  E-value=4.8e-11  Score=126.29  Aligned_cols=211  Identities=16%  Similarity=0.158  Sum_probs=148.8

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-----eCCCCCccceeeecc---CCcEEEEe
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-----EEDKTIADGLAVDWI---YSHIYWTD  565 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-----~~~~~~p~glAvD~~---~~~lY~td  565 (734)
                      ..+.++.++..|.+|++.+ .+.||+++...++|+++..+++....+..     ..+...|.|||+++.   ++.||++.
T Consensus        23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            3456778899999999997 57899999778999999876444322211     124567889999973   78899864


Q ss_pred             C--CCCeEEEEeCCCC--------ceEEEEc----CCCCCceeEEEeCCCCeEEEEec------------CCCceEEEec
Q psy8875         566 A--HKNTIELANFEGT--------MRKVLVR----SYLDEPRSLALNPIDGWMYWSDW------------GQNAKIERAG  619 (734)
Q Consensus       566 ~--~~~~I~~~~ldG~--------~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~------------~~~~~I~~~~  619 (734)
                      .  ..++|.++.+++.        ..++|+.    ........|+++| .|+||++.-            ...++|+|++
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            3  4578999988762        2344442    2345678899998 579999951            1247999999


Q ss_pred             cCCC--------ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCce---------------EEEEc
Q psy8875         620 MDGS--------HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGNR---------------RLVLY  673 (734)
Q Consensus       620 ldG~--------~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~~---------------~~i~~  673 (734)
                      .||+        ..+ ++...+..|.||++|+ .+.||++|.+.+   +|.++. .|.+.               ..++.
T Consensus       181 ~dG~ip~~nPf~~~~-i~a~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~  257 (347)
T 3das_A          181 PDGEPAPGNPFPGSP-VYSYGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQ  257 (347)
T ss_dssp             TTSSBCTTCSSTTCC-EEEBCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred             CCCCccCCCCCCCCe-EEeeCCCCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEe
Confidence            9998        333 5567889999999997 699999997654   455543 23221               00000


Q ss_pred             CCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCC
Q psy8875         674 SPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       674 ~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      -......|.||+++.+.+|.+.....+|+++....+
T Consensus       258 ~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          258 WSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             ECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETT
T ss_pred             cCCCCCCCcceEEEcCceeeccccCCEEEEEEecCC
Confidence            001123688999999999999999999999975443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.36  E-value=2.4e-10  Score=121.43  Aligned_cols=230  Identities=10%  Similarity=0.058  Sum_probs=150.1

Q ss_pred             cceEEeecCCCceEEE---ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEE-EeCC---------CCC
Q psy8875         483 HDIRKISLDHHEMTAI---VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVV-IEED---------KTI  548 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l---~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~-~~~~---------~~~  548 (734)
                      ..|+.+++++.....+   ......|.+|++++..+.||+++...+.|...+++. +....+. +...         ...
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence            5677777765544333   224567889999998889999987778887777742 2222211 1111         123


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEE--EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKV--LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG--  622 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~--l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG--  622 (734)
                      |.++++++.++ ||+++...++|.+.+++  |....+  +.......|++++++|...+||+++.. ...|...+++.  
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~  220 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQT  220 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTT
T ss_pred             ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCC
Confidence            66799998766 99999988999998887  332221  122334579999999987789998854 35666666653  


Q ss_pred             CceEEE--EEcC------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC-ceEEEEcCCCCCCCCeEEEEE--CCEE
Q psy8875         623 SHRNMV--IVSD------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG-NRRLVLYSPQTLSHPFSISTF--EDWL  691 (734)
Q Consensus       623 ~~~~~l--v~~~------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~--~~~l  691 (734)
                      ...+.+  +...      ...|.+|++++.+++||++....+.|..++++.. ..+.+.........|.+|++.  +.+|
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l  300 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFV  300 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEE
Confidence            222211  1111      1348889999888899999988888888887632 223222211223568899994  5689


Q ss_pred             EEEeCCCCceEE--EeccCCCceEE
Q psy8875         692 YWSDWQQKAIYK--ANKFTGDNLTA  714 (734)
Q Consensus       692 ywtd~~~~~v~~--~~~~~G~~~~~  714 (734)
                      |+++...+.|..  ++..+|+...+
T Consensus       301 ~v~~~~~~~v~v~~~d~~tg~l~~~  325 (347)
T 3hfq_A          301 VVVNQNTDNATLYARDLTSGKLSLL  325 (347)
T ss_dssp             EEEETTTTEEEEEEECTTTCCEEEE
T ss_pred             EEEEcCCCcEEEEEEeCCCCeEEec
Confidence            999987666544  46666765443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.34  E-value=7.8e-10  Score=116.37  Aligned_cols=224  Identities=11%  Similarity=0.043  Sum_probs=157.3

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc-eeeeccCC
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG-LAVDWIYS  559 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g-lAvD~~~~  559 (734)
                      ...|+.+++........+. ....+ ++++++..+.||++....+.|+.+++..+......+. ....|.. +++++.++
T Consensus        19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           19 LRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQ   96 (331)
T ss_dssp             GTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSS
T ss_pred             CCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCC
Confidence            4678888887666544443 34455 9999998888999998888999999986654122333 2356777 99998888


Q ss_pred             cEEEEeCCCC--eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE--EEEcCC
Q psy8875         560 HIYWTDAHKN--TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM--VIVSDI  633 (734)
Q Consensus       560 ~lY~td~~~~--~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~--lv~~~l  633 (734)
                      .||.+....+  .|.+.++........+ .....|.+++++|...+||+++......|...+++  |.....  ......
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  175 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG  175 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC
Confidence            8994333324  8999999765544333 23457899999998888999986533325555554  332111  111334


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~  708 (734)
                      ..|.++++++.+++||++....+.|..+++.....   ...+.   ....|.+|++.  +.+||++....+.|..++..+
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~  252 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG---TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS  252 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE---CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc---CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence            56999999988888999999889999999865443   22222   23567888883  567999998888899998877


Q ss_pred             CCc
Q psy8875         709 GDN  711 (734)
Q Consensus       709 G~~  711 (734)
                      |+.
T Consensus       253 ~~~  255 (331)
T 3u4y_A          253 GTL  255 (331)
T ss_dssp             TEE
T ss_pred             Cce
Confidence            765

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.32  E-value=1.5e-13  Score=133.37  Aligned_cols=145  Identities=22%  Similarity=0.541  Sum_probs=97.0

Q ss_pred             ecCCCCeecC--CcccCCCCCCCCCCCCC---CCC-CCCCCCC--ceecCCCCccccccccccCCCCCCCCCCCCCCCCC
Q psy8875         271 TCANGNCIQR--IWLCDGDDDCKDGSDEK---SCQ-PVKCTAG--QFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMN  342 (734)
Q Consensus       271 ~C~~g~Ci~~--~~~Cdg~~dC~dgsDe~---~C~-~~~C~~~--~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~  342 (734)
                      .|.||+|++.  ++.|    .|..|+.+.   .|+ ...|...  ..+|.++++|++....                  .
T Consensus        12 pC~ng~C~~~~g~~~C----~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~------------------~   69 (186)
T 1z1y_A           12 ICXNGQLVQMSNHFXC----MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP------------------A   69 (186)
T ss_dssp             CCBTEEEEECSSCEEE----EECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSST------------------T
T ss_pred             CCCCCEeECCCCCeEe----ECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCC------------------c
Confidence            4666777664  5677    677776433   554 3445432  3467666666662100                  0


Q ss_pred             CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccc----cCCCcceeecCCCc
Q psy8875         343 SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV----DLPVGYMCECNEGY  418 (734)
Q Consensus       343 ~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~----~~~~~~~C~C~~G~  418 (734)
                      ..+.|.|                         .|+.||.+....|.+++|...+..-...|+    +++++|+|.|++||
T Consensus        70 ~~g~y~C-------------------------~C~~G~~g~~~~C~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy  124 (186)
T 1z1y_A           70 QVNMYXC-------------------------GCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGX  124 (186)
T ss_dssp             SSCSEEE-------------------------EECTTEEEETTEEEEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEE
T ss_pred             CCCCEEC-------------------------CCCCCCccCCCCCCCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCC
Confidence            0156777                         455555544445667778754321124666    89999999999999


Q ss_pred             EecC-CCCccccc--cCcCCCCCc---ccceeccCCceEEecCCCeeeCCCC
Q psy8875         419 KLSS-NRHTCIDI--DECETPGSC---SQICLNEKGGFKCECVAGYIKDPHH  464 (734)
Q Consensus       419 ~l~~-~~~~C~~~--~eC~~~~~C---~~~C~n~~g~~~C~C~~gy~~~~~~  464 (734)
                      .+.. +++.|+++  +||..  +|   .++|+++.++|+|.|++||.++...
T Consensus       125 ~g~~~~~~~C~~~~~~~C~~--~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~  174 (186)
T 1z1y_A          125 VPNPEDEXXCTXTGETACQL--XCNTDNEVCXNVEGVYXCQCMEGFTFDXEX  174 (186)
T ss_dssp             EEETTTTTEEEEEECCCCCC--CCCTTTEEEEEETTEEEEEECTTCEEETTT
T ss_pred             cccCCCCCcceEcCCCcccc--cccccCcceecCCCCeeeECCCCCccCccc
Confidence            9865 78999976  89974  68   4589999999999999999997654

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.31  E-value=1.1e-12  Score=110.20  Aligned_cols=82  Identities=35%  Similarity=0.906  Sum_probs=70.5

Q ss_pred             cccccccCCCCC-cCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEec--CCCeeeCCCC
Q psy8875         388 GVDECAKDNGGC-LHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCEC--VAGYIKDPHH  464 (734)
Q Consensus       388 ~~~eC~~~~~~C-~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C--~~gy~~~~~~  464 (734)
                      ++|||...+..| .+.|++++++|+|.|++||.+..+++.|+++|||.. ++|.++|+|+.++|.|.|  .+||.+..+.
T Consensus         2 dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~-~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~   80 (87)
T 1z6c_A            2 DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE-NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQ   80 (87)
T ss_dssp             CSCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHH-SCCSSEECCCSSSCCEECCSSSCCBCCTTS
T ss_pred             ccccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCC-CCCCCEEEccCCCEEEECCCCcCCcccCCC
Confidence            578898777667 568999999999999999999988999999999964 679999999999999999  6888887665


Q ss_pred             Ccccccc
Q psy8875         465 PTQCKAA  471 (734)
Q Consensus       465 ~t~C~~~  471 (734)
                      ++ |+++
T Consensus        81 ~~-C~di   86 (87)
T 1z6c_A           81 KS-CEVV   86 (87)
T ss_dssp             SS-CBCC
T ss_pred             Cc-ceEC
Confidence            54 7653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.31  E-value=4.1e-10  Score=118.93  Aligned_cols=226  Identities=13%  Similarity=0.172  Sum_probs=154.5

Q ss_pred             eeeeee--ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEe-CCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIE-EDKT  547 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~-~~~~  547 (734)
                      .|+++.  ...|+++++++.....+. .....+.+|++++ .+.||++....    +.|++++++++....++.. ....
T Consensus        57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~  135 (333)
T 2dg1_A           57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  135 (333)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence            355543  456888888776666554 3456789999986 46788887665    6899999885544333321 1234


Q ss_pred             CccceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc-
Q psy8875         548 IADGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-  620 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-  620 (734)
                      .|.+|++|+ .++||+++..      ...|++++.++.....+. ..+..|.+|++++...+||+++.. ...|++.++ 
T Consensus       136 ~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~  212 (333)
T 2dg1_A          136 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT-ANRLHRIALE  212 (333)
T ss_dssp             CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEEC
T ss_pred             cccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCC-CCeEEEEEec
Confidence            688999996 5789999874      468999988875544443 345679999999977789999854 468988888 


Q ss_pred             -CCCceEE-----EEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC---CCCCCeEEEEE--C
Q psy8875         621 -DGSHRNM-----VIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ---TLSHPFSISTF--E  688 (734)
Q Consensus       621 -dG~~~~~-----lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~---~~~~P~gl~v~--~  688 (734)
                       +|.....     +.. .....|.+|++|. .++||+++...+.|.+++.+|...+.+.....   .+..|.++++.  +
T Consensus       213 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg  291 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT  291 (333)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             CCCcCcccccceEEEecCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCC
Confidence             4443322     111 1124799999994 57899999888899999998776555532110   12268888884  3


Q ss_pred             CEEEEEeCCC-----CceEEEec
Q psy8875         689 DWLYWSDWQQ-----KAIYKANK  706 (734)
Q Consensus       689 ~~lywtd~~~-----~~v~~~~~  706 (734)
                      ++||++....     +.|++++.
T Consensus       292 ~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          292 NQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             CEEEEEEECGGGTCCEEEEEEEC
T ss_pred             CEEEEEeCccCCCCCceEEEEec
Confidence            5899887652     46777753

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.31  E-value=1.5e-14  Score=138.85  Aligned_cols=127  Identities=17%  Similarity=0.248  Sum_probs=99.1

Q ss_pred             CCCCCCCCcCCCCCCCcccccCcC--CCCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccC
Q psy8875         119 PDCSDGSDEKSCKNRTCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINA  196 (734)
Q Consensus       119 ~dC~dg~de~~C~~~~C~~~~f~C--~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~  196 (734)
                      .+|.|++||.+|  .+|.+.+|+|  .+|+|||.+|+|||..||.|||||.+        |.                  
T Consensus        41 ~~c~d~sDE~~C--~~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~--------C~------------------   92 (215)
T 2gtl_O           41 GSLRHRVEELED--PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD--------CT------------------   92 (215)
T ss_dssp             HHHHHHHHHHSC--CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC--------CC------------------
T ss_pred             ccCCcchhhccC--CCCCCcceeeCCCCCcCccccccCCCCCcCCCcccccC--------CC------------------
Confidence            478999999999  4799999999  79999999999999999999999988        72                  


Q ss_pred             CCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCC--CCceecCC
Q psy8875         197 HSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCR--SDEFTCAN  274 (734)
Q Consensus       197 ~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~--~~~~~C~~  274 (734)
                         ..                       +|. ..+|+|.     +..+      .|.+..++..|...|.  ..+|.|.+
T Consensus        93 ---~~-----------------------~C~-~~~F~c~-----~~~~------~C~~~~~~~~c~~~~s~~~~~~fc~~  134 (215)
T 2gtl_O           93 ---LP-----------------------TKA-GDKFIGD-----VCFD------HCTKRRPEHMTLAFESSSIAAFFTPI  134 (215)
T ss_dssp             ---CS-----------------------SCT-TCEEEEE-----EEEE------SSCSSCCSEEEEEEEEEEECTTCTTE
T ss_pred             ---CC-----------------------CcC-CCceeee-----ECCC------cccCCCCCCceeeeeccccccccCCC
Confidence               11                       565 5788872     2222      2666777777754454  35677877


Q ss_pred             C---Ceec-----------CCcccCCCCCCCCCCCCCCCCCCCCCCCceecCC
Q psy8875         275 G---NCIQ-----------RIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQN  313 (734)
Q Consensus       275 g---~Ci~-----------~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~  313 (734)
                      +   .||.           .+|.|||..+  +|++|..|.++.+...+|.|..
T Consensus       135 ~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~pp~~~~l~f~C~~  185 (215)
T 2gtl_O          135 ADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHPPEEDGLGLVGEF  185 (215)
T ss_dssp             EEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECCSSTTTEEEEEEE
T ss_pred             CccCeEEEEEeecCCCccccceeecCEec--CCcceeeecCCCCCCceeEEEe
Confidence            6   4777           7899999999  6999999987767777788864

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.30  E-value=1.4e-12  Score=109.16  Aligned_cols=79  Identities=35%  Similarity=0.882  Sum_probs=67.4

Q ss_pred             cccccccCCCCCcC-ccccCCCcceeecCCCcEec-CCCCccccccCcCC-CCCcc-cceeccCCceEEecCCCeeeCCC
Q psy8875         388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCIDIDECET-PGSCS-QICLNEKGGFKCECVAGYIKDPH  463 (734)
Q Consensus       388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~-~~~~~C~~~~eC~~-~~~C~-~~C~n~~g~~~C~C~~gy~~~~~  463 (734)
                      ++|||+..+..|.+ .|++++++|+|.|++||.+. .+++.|++||||+. +..|. ++|+|+.|+|+|.|++||.+..+
T Consensus         2 dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~   81 (86)
T 1lmj_A            2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPN   81 (86)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSS
T ss_pred             ccccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCC
Confidence            57899877777865 89999999999999999985 35889999999974 35576 69999999999999999999877


Q ss_pred             CCc
Q psy8875         464 HPT  466 (734)
Q Consensus       464 ~~t  466 (734)
                      .++
T Consensus        82 ~~~   84 (86)
T 1lmj_A           82 ISA   84 (86)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.30  E-value=1.5e-10  Score=124.09  Aligned_cols=227  Identities=12%  Similarity=0.155  Sum_probs=149.1

Q ss_pred             eeeee-ccceEEeecCCCceEEE-------ecCCcceEEEeeecc---CCeEEEEEeC-------CCcEEEEecCCCC--
Q psy8875         477 LLFAR-KHDIRKISLDHHEMTAI-------VNSTKSATAIDFVFR---TGMIFWSDIS-------EKKIYKAPIDEGS--  536 (734)
Q Consensus       477 l~~~~-~~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~~---~~~lyw~d~~-------~~~I~~~~l~~g~--  536 (734)
                      |+++. ...|+++..++...+.+       ......+.+|++++.   .+.||+++..       ..+|.|+.++.+.  
T Consensus        32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~  111 (353)
T 2g8s_A           32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK  111 (353)
T ss_dssp             EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred             EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence            45544 34677776554321111       123446789999986   7999999765       4579998886432  


Q ss_pred             --ceEEEEeC------CCCCccceeeeccCCcEEEEeCC-------------CCeEEEEeCCCCc------------eEE
Q psy8875         537 --ERTVVIEE------DKTIADGLAVDWIYSHIYWTDAH-------------KNTIELANFEGTM------------RKV  583 (734)
Q Consensus       537 --~~~~~~~~------~~~~p~glAvD~~~~~lY~td~~-------------~~~I~~~~ldG~~------------~~~  583 (734)
                        ..++++..      ....+.+|++++ .++||++...             .++|.|++.+|+.            ...
T Consensus       112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~  190 (353)
T 2g8s_A          112 VTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE  190 (353)
T ss_dssp             EEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT
T ss_pred             CCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc
Confidence              23344431      234578999996 5699999643             3689999999872            223


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCC----------------------------ceEEEEEcCC
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGS----------------------------HRNMVIVSDI  633 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~----------------------------~~~~lv~~~l  633 (734)
                      ++...+.+|.+|++|+..|.||++|.+..  ..|.++...+.                            ...++.....
T Consensus       191 i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~  270 (353)
T 2g8s_A          191 IWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS  270 (353)
T ss_dssp             EEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC
T ss_pred             EEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCC
Confidence            44467889999999998999999997642  24444322111                            0000111112


Q ss_pred             CCceeEEEec------CCCeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE-CCEEEEE-eCCCCceE
Q psy8875         634 KWPNGLTLDL------VQRRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF-EDWLYWS-DWQQKAIY  702 (734)
Q Consensus       634 ~~P~glavD~------~~~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~-~~~lywt-d~~~~~v~  702 (734)
                      ..|.||++..      ..+.||+++...++|.++.+++...   ..++.  .....|.+|++. ++.||++ |..+++|+
T Consensus       271 ~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~td~~~g~I~  348 (353)
T 2g8s_A          271 PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT--DRGQRIRDVRTGPDGYLYVLTDESSGELL  348 (353)
T ss_dssp             CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG--GGCCCEEEEEECTTSCEEEEECSTTEEEE
T ss_pred             cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc--CCCCceeEEEECCCCcEEEEEeCCCCEEE
Confidence            3588999963      3589999999999999999986422   12222  224589999994 6789996 66788999


Q ss_pred             EEec
Q psy8875         703 KANK  706 (734)
Q Consensus       703 ~~~~  706 (734)
                      |+.+
T Consensus       349 ri~~  352 (353)
T 2g8s_A          349 KVSP  352 (353)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9853

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.29  E-value=2.8e-12  Score=106.20  Aligned_cols=73  Identities=38%  Similarity=0.938  Sum_probs=64.0

Q ss_pred             cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcc-cceeccCCceEEecCCCeeeCCC
Q psy8875         388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCS-QICLNEKGGFKCECVAGYIKDPH  463 (734)
Q Consensus       388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~-~~C~n~~g~~~C~C~~gy~~~~~  463 (734)
                      ++|||.. +..|.+ .|++++++|+|.|++||.+  +++.|+++|||....+|. ++|+|+.++|+|.|++||.++.+
T Consensus         4 dideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~~C~dideC~~~~~C~~~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A            4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             CCCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETTEEEECCGGGTCCTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred             ccccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCCccCCcccccCCCCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence            6889986 456754 8999999999999999988  588999999998666786 59999999999999999998776

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=148.26  Aligned_cols=101  Identities=31%  Similarity=0.583  Sum_probs=84.8

Q ss_pred             CceecCCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCccc
Q psy8875          58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQA  137 (734)
Q Consensus        58 ~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~  137 (734)
                      ..|.|..+.+++..+.||+..+|.+.+++  |    |...+|+|.+  ++||+..|+|||..||.|++||.+|..  |..
T Consensus       174 sl~~C~~~~~~~~~h~~DagV~C~~~~~~--c----~~~~~~~C~~--~~ci~~~~~Cdg~~dC~d~sDE~~C~~--c~~  243 (565)
T 2xrc_A          174 SLAECTFTKRRTMGYQDFADVVCYTQKAD--S----PMDDFFQCVN--GKYISQMKACDGINDCGDQSDELCCKA--CQG  243 (565)
T ss_dssp             CGGGSEEECCCCCSSCCCCEEEBCCC---------------CBCTT--SCBCCTTSTTSSSCCSSSSSSSSSBSS--CSS
T ss_pred             chhhcccCcccccccccCCceeccccccC--C----CCcCeeECCC--CCccCHHHcCCCcccCCCCcccccccc--cCC
Confidence            45788877788888999999999987643  2    3346699987  689999999999999999999999953  999


Q ss_pred             ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       138 ~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      .+|+|.++.||+..++|||..||.||+||.+
T Consensus       244 ~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~  274 (565)
T 2xrc_A          244 KGFHCKSGVCIPSQYQCNGEVDCITGEDEVG  274 (565)
T ss_dssp             SCEEETTTEEECGGGTTSSSCCSSSCTTSSS
T ss_pred             CceecCCCcccCccccCCCcccCCCCccccC
Confidence            9999999999999999999999999999987

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.27  E-value=3.9e-10  Score=117.02  Aligned_cols=203  Identities=14%  Similarity=0.041  Sum_probs=141.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC-------Cccceee---eccCCcEEE-EeC----
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT-------IADGLAV---DWIYSHIYW-TDA----  566 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-------~p~glAv---D~~~~~lY~-td~----  566 (734)
                      ...|.+++||...+++|+++...++|.++++.++...++.+ .++.       .|.||.+   |+. ++|++ ++.    
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~-~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af   89 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVI-DGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSF   89 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECC-TTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEec-CCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccc
Confidence            34688999999899999999999999999988544444422 2322       5689999   666 77777 552    


Q ss_pred             --------CCCeEEEEeCC----CCceEEEEc-----C-------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         567 --------HKNTIELANFE----GTMRKVLVR-----S-------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       567 --------~~~~I~~~~ld----G~~~~~l~~-----~-------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                              +...|.+.+++    |+....+-.     .       ....|++||+|+ .|.+|+++....+.|+|++.||
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCC
Confidence                    24679999998    544333221     1       223589999997 6999999964227899999999


Q ss_pred             CceEEEEEcC-----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc---C-CCCCCCCeEE-EE-ECCEE
Q psy8875         623 SHRNMVIVSD-----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY---S-PQTLSHPFSI-ST-FEDWL  691 (734)
Q Consensus       623 ~~~~~lv~~~-----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~---~-~~~~~~P~gl-~v-~~~~l  691 (734)
                      +...++....     ...++||++.+.+.+|++++. .++|+++++....+..+..   + ...+..|.+| ++ .++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence            9655544321     234789999998999999998 8999999988432211211   1 1246678896 55 67776


Q ss_pred             -EEEeCCCCceEEEeccCC
Q psy8875         692 -YWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       692 -ywtd~~~~~v~~~~~~~G  709 (734)
                       ++++...+.+ ++...+|
T Consensus       248 llV~~~~~~~~-~l~S~Dg  265 (334)
T 2p9w_A          248 VLVGARAPYAI-SFRSWDN  265 (334)
T ss_dssp             EEEEEETTEEE-EEECSST
T ss_pred             EEEEcCCCCEE-EEECCCC
Confidence             8988766544 3333344

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.26  E-value=4.2e-09  Score=113.49  Aligned_cols=234  Identities=13%  Similarity=0.091  Sum_probs=171.4

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      +++++.  ...|+..++........+.....+.+++|++....||++....+.|+..++..+.....+ . ....+.+++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~v~~~~   80 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-P-AGSSPQGVA   80 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-E-CSSSEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE-E-CCCCccceE
Confidence            344443  356777787766655555555678999999988899999888899999998755443333 2 233788999


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI  633 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l  633 (734)
                      +.+.++.||++....+.|.+.++........+. ....|.+++++|...+||++... .+.|...++........+.. -
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~~-~  157 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK-TGKSPLGLALSPDGKKLYVTNNG-DKTVSVINTVTKAVINTVSV-G  157 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEEC-C
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe-CCCCcceEEECCCCCEEEEEeCC-CCEEEEEECCCCcEEEEEec-C
Confidence            998888999999888999999998665544443 34578999999988889888754 47898888865544333332 3


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeC--CCCceEEEeccCC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDW--QQKAIYKANKFTG  709 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~--~~~~v~~~~~~~G  709 (734)
                      ..|.++++++.+++||++....+.|..+++........+..   ...|.++++.  +.+||++..  ..+.|+.++..++
T Consensus       158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            56899999988889999988889999999876655444432   3457778873  567888875  5678888888777


Q ss_pred             CceEEEec
Q psy8875         710 DNLTAITG  717 (734)
Q Consensus       710 ~~~~~l~~  717 (734)
                      +.+..+..
T Consensus       235 ~~~~~~~~  242 (391)
T 1l0q_A          235 KITARIPV  242 (391)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEec
Confidence            76665543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.26  E-value=2.1e-10  Score=121.92  Aligned_cols=199  Identities=13%  Similarity=0.088  Sum_probs=134.1

Q ss_pred             ecC-CcceEEEeeeccCCeEEEEE------------eCCCcEEEEecCCC--CceEEEEeCC-----CCCccceeeecc-
Q psy8875         499 VNS-TKSATAIDFVFRTGMIFWSD------------ISEKKIYKAPIDEG--SERTVVIEED-----KTIADGLAVDWI-  557 (734)
Q Consensus       499 ~~~-~~~~~~i~~d~~~~~lyw~d------------~~~~~I~~~~l~~g--~~~~~~~~~~-----~~~p~glAvD~~-  557 (734)
                      +++ ...+..|++++ ++.+|.+.            ...++|++++++..  ..+++.+...     ...|.||.+... 
T Consensus        45 i~~~~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~  123 (355)
T 3sre_A           45 VKGIDNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD  123 (355)
T ss_dssp             CTTCCSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred             eCCCCCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence            344 34677888776 68888875            24778999998732  2233333321     248999999652 


Q ss_pred             --CCcEEEEeCC--CCeEEEEe--CCCCceEEEE---cCCCCCceeEEEeCCCCeEEEEecC----------------CC
Q psy8875         558 --YSHIYWTDAH--KNTIELAN--FEGTMRKVLV---RSYLDEPRSLALNPIDGWMYWSDWG----------------QN  612 (734)
Q Consensus       558 --~~~lY~td~~--~~~I~~~~--ldG~~~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~----------------~~  612 (734)
                        +.+||+++..  ..+|++..  .++.....+.   ...+..|+++++|+ .|.+|+++..                ..
T Consensus       124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~  202 (355)
T 3sre_A          124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAW  202 (355)
T ss_dssp             TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred             CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCc
Confidence              3469999987  45666554  4444333222   24578999999997 5787777531                23


Q ss_pred             ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC----ceEEEEcCCCCCCCCeEEEEEC
Q psy8875         613 AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG----NRRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       613 ~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~----~~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      ++|++.+..  ..+ ++...+..||||++++.+++||++|+..++|+++++++.    +++++ .   ....|.||+++.
T Consensus       203 g~vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~---~~g~PDGi~vD~  275 (355)
T 3sre_A          203 SFVTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-S---FDTLVDNISVDP  275 (355)
T ss_dssp             EEEEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-E---CSSEEEEEEECT
T ss_pred             cEEEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-e---CCCCCceEEEeC
Confidence            678888763  333 344678999999999999999999999999999998642    23333 2   246799999963


Q ss_pred             --CEEEEEe-CCCCceEEEec
Q psy8875         689 --DWLYWSD-WQQKAIYKANK  706 (734)
Q Consensus       689 --~~lywtd-~~~~~v~~~~~  706 (734)
                        |.||++. |+..+|.++++
T Consensus       276 e~G~lwva~~~~g~~v~~~~P  296 (355)
T 3sre_A          276 VTGDLWVGCHPNGMRIFFYDA  296 (355)
T ss_dssp             TTCCEEEEEESCHHHHHSCCT
T ss_pred             CCCcEEEEecCCceEEEEECC
Confidence              8999955 56445544443

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.25  E-value=5.6e-13  Score=118.83  Aligned_cols=85  Identities=33%  Similarity=0.649  Sum_probs=66.6

Q ss_pred             CCCCCCCCCCCCcccccccc--CCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEE
Q psy8875         375 DCPLMQDEDPTKCGVDECAK--DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKC  452 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~--~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C  452 (734)
                      .|++||.+..  +++++|..  .++.|.+.|++ .++|+|.|++||.+.. ++.|+++|||+.+.+|.++|+|+.++|+|
T Consensus        27 ~C~~Gy~g~~--~~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-g~~C~dideC~~~~~C~~~C~n~~g~y~C  102 (118)
T 1dx5_I           27 VCAEGFAPIP--HEPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-GFICTDIDECENGGFCSGVCHNLPGTFEC  102 (118)
T ss_dssp             ECCTTEEEET--TEEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-TTEEEECCHHHHCSSCSSEEEECSSSEEE
T ss_pred             ECCCCccccC--CCCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-CCccccccccCCCCCCcCeEEeCCCCEEE
Confidence            4555554331  23444542  24567788998 5899999999999875 89999999998767898899999999999


Q ss_pred             ecCCCeeeCCC
Q psy8875         453 ECVAGYIKDPH  463 (734)
Q Consensus       453 ~C~~gy~~~~~  463 (734)
                      .|++||.+..+
T Consensus       103 ~C~~G~~g~~~  113 (118)
T 1dx5_I          103 ICGPDSALAGQ  113 (118)
T ss_dssp             EECSSSSCEEE
T ss_pred             ECCCCCccCCC
Confidence            99999988654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.25  E-value=4.4e-09  Score=110.57  Aligned_cols=250  Identities=12%  Similarity=0.116  Sum_probs=158.4

Q ss_pred             eeeeeec--cceEEeecC--CCceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCC
Q psy8875         476 SLLFARK--HDIRKISLD--HHEMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTI  548 (734)
Q Consensus       476 ~l~~~~~--~~I~~i~l~--~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~  548 (734)
                      +|+++..  ..|....++  +.....+  +.....+.+++|++..+.||++....+.|...+++.+... .+........
T Consensus        51 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  130 (343)
T 1ri6_A           51 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG  130 (343)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             EEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCC
Confidence            3444443  456665554  4443322  2223478899999988889999887788888777423221 2222234456


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCC--CceE----EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEG--TMRK----VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG--~~~~----~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                      |.++++++.++.||+++...+.|.+.++..  ....    .+.......|++++++|...+||++... ...|...+++.
T Consensus       131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-~~~i~~~~~~~  209 (343)
T 1ri6_A          131 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELKD  209 (343)
T ss_dssp             BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESSC
T ss_pred             ceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-CCEEEEEEecC
Confidence            899999998889999997778999988864  3222    1222334689999999988889999843 46777777753


Q ss_pred             --CceE-E-EEEc---C---CCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCCCCeEEEEE--C
Q psy8875         623 --SHRN-M-VIVS---D---IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLSHPFSISTF--E  688 (734)
Q Consensus       623 --~~~~-~-lv~~---~---l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v~--~  688 (734)
                        ...+ . .+..   .   ...|.+|++++.+++||++....+.|..++++  +...+.+..... ...|.+|++.  +
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg  288 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-ETQPRGFNVDHSG  288 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-SSSCCCEEECTTS
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC-CCccceEEECCCC
Confidence              2221 1 1111   1   23566899998888999999888899998887  443343322111 2348888884  5


Q ss_pred             CEEEEEeCCCCceEE--EeccCCCceEEEecccccCCCccCC
Q psy8875         689 DWLYWSDWQQKAIYK--ANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       689 ~~lywtd~~~~~v~~--~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      .+||++....+.|..  ++..+|+.. .+.....-..|..++
T Consensus       289 ~~l~~~~~~~~~v~v~~~d~~~g~~~-~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          289 KYLIAAGQKSHHISVYEIVGEQGLLH-EKGRYAVGQGPMWVV  329 (343)
T ss_dssp             SEEEEECTTTCEEEEEEEETTTTEEE-EEEEEECSSSCCEEE
T ss_pred             CEEEEecCCCCeEEEEEEcCCCceee-EccccccCCCCeeEE
Confidence            679999876665544  466566533 333222234566553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.24  E-value=3.1e-09  Score=108.10  Aligned_cols=195  Identities=11%  Similarity=0.033  Sum_probs=137.2

Q ss_pred             ceEEEeeeccCCeEEEEEe--CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-
Q psy8875         504 SATAIDFVFRTGMIFWSDI--SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-  580 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~--~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-  580 (734)
                      .+.||+|++. ++||++..  ..+.|.++++..+.....+.-.....+.|++++  +++||++.+..++|.+.+..... 
T Consensus        22 f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v   98 (266)
T 2iwa_A           22 FTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN   98 (266)
T ss_dssp             CEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred             CcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence            4789999865 79999874  367899999986654433322233345567776  68999999999999999987433 


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--c---CCCCceeEEEecCCCeEEEEeCCC
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--S---DIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~---~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ...+-..   .|.|+.|.+..++||.++ + .++|..++.+.......+.  .   .+..|++|++.  +++||.+.+..
T Consensus        99 ~~~i~~g---~~~g~glt~Dg~~l~vs~-g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~  171 (266)
T 2iwa_A           99 IKNFTHQ---MKDGWGLATDGKILYGSD-G-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQT  171 (266)
T ss_dssp             EEEEECC---SSSCCEEEECSSSEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS
T ss_pred             EEEEECC---CCCeEEEEECCCEEEEEC-C-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCC
Confidence            3333222   456666666678999998 5 4799999887644322222  1   24468899886  68999999999


Q ss_pred             CeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875         656 NEISSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~  708 (734)
                      +.|.++++........+...           .....|.||++.  +++||+|.....+|+.++...
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            99999998655443333211           112468999996  579999998888888886544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=1e-09  Score=119.77  Aligned_cols=234  Identities=11%  Similarity=0.019  Sum_probs=151.7

Q ss_pred             eeeeeec------cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEE
Q psy8875         476 SLLFARK------HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTV  540 (734)
Q Consensus       476 ~l~~~~~------~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~  540 (734)
                      .+|+++.      +.|..|++........++....| +|++++..++||+++.         ..+.|..+++..+.....
T Consensus        86 ~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~  164 (426)
T 3c75_H           86 RVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIAD  164 (426)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             EEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEE
Confidence            4666654      57888888877766656655678 9999999999999985         356788888875544333


Q ss_pred             EEeC---C---CCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceE-EEEcCC--CCCcee----EEE---------
Q psy8875         541 VIEE---D---KTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRK-VLVRSY--LDEPRS----LAL---------  597 (734)
Q Consensus       541 ~~~~---~---~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~-~l~~~~--l~~P~~----iav---------  597 (734)
                      +.-.   .   ...|.++++++.+++||+++.. .+.|.++++...... .|-...  ...|.+    +++         
T Consensus       165 I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V  244 (426)
T 3c75_H          165 IELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARV  244 (426)
T ss_dssp             EEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEE
Confidence            3221   0   2579999999999999999875 678999888654322 221110  001111    333         


Q ss_pred             ----------------------------eCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC---------CCcee--
Q psy8875         598 ----------------------------NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI---------KWPNG--  638 (734)
Q Consensus       598 ----------------------------D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l---------~~P~g--  638 (734)
                                                  .+..+.+||+..  .++|+++++.+....++-.-.+         ..|.|  
T Consensus       245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence                                        333334444432  2355555555433322110000         12555  


Q ss_pred             -EEEecCCCeEEEEeCC---------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEe
Q psy8875         639 -LTLDLVQRRLYWVDAK---------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKAN  705 (734)
Q Consensus       639 -lavD~~~~~LYw~D~~---------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~  705 (734)
                       +++++.+++||++...         .+.|..+|+....+..-+.   ....|.+|++.  +. +||.+.+..+.|..++
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~---vg~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE---LGHEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE---CCCCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence             8999999999999641         3579999976554333232   12359999994  56 8999999999999999


Q ss_pred             ccCCCceEEE
Q psy8875         706 KFTGDNLTAI  715 (734)
Q Consensus       706 ~~~G~~~~~l  715 (734)
                      ..+++.+..|
T Consensus       400 ~~t~kvv~tI  409 (426)
T 3c75_H          400 AATGEELRSV  409 (426)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCCEEEEe
Confidence            9999988877

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.23  E-value=1.4e-09  Score=115.41  Aligned_cols=220  Identities=16%  Similarity=0.133  Sum_probs=141.3

Q ss_pred             eEEeecCCCceEE--EecCCcceEEEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCC
Q psy8875         485 IRKISLDHHEMTA--IVNSTKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYS  559 (734)
Q Consensus       485 I~~i~l~~~~~~~--l~~~~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~  559 (734)
                      |+.++......+.  .......|.+|+|++... ||+++..  .+.|+.++++++..+.+.. ......|.+|++++.++
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence            3444443333333  234457888999998554 9998864  5788888887544322211 22356799999999888


Q ss_pred             cEEEEeCCCCeEEEEeCC--CCceEEE--EcC--------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCce
Q psy8875         560 HIYWTDAHKNTIELANFE--GTMRKVL--VRS--------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHR  625 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ld--G~~~~~l--~~~--------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~  625 (734)
                      .||++....+.|.+.+++  |....+.  ...        ....|.+++++|... ||+++.+. ..|...+++  |...
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~-~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGS-DKVYVYNVSDAGQLS  176 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTT-TEEEEEEECTTSCEE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCC-CEEEEEEECCCCcEE
Confidence            999999878888888774  3332221  111        123577899998665 99998653 577777765  3322


Q ss_pred             EEE--EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--CceEEEE--cC-CC---CCCCCeEEEE--ECCEEEE
Q psy8875         626 NMV--IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNRRLVL--YS-PQ---TLSHPFSIST--FEDWLYW  693 (734)
Q Consensus       626 ~~l--v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~i~--~~-~~---~~~~P~gl~v--~~~~lyw  693 (734)
                      .+.  ....-..|++|++++.+++||+++...+.|..++++.  ...+.+.  .. ..   ....|.+|++  .+.+||+
T Consensus       177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred             EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence            211  1122346899999988888999998888888888774  2222221  11 10   0134778888  3567999


Q ss_pred             EeCCCCceEEEecc
Q psy8875         694 SDWQQKAIYKANKF  707 (734)
Q Consensus       694 td~~~~~v~~~~~~  707 (734)
                      ++...+.|..++..
T Consensus       257 ~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          257 SNRGYNTLAVFAVT  270 (347)
T ss_dssp             EEETTTEEEEEEEC
T ss_pred             EeCCCCEEEEEEEC
Confidence            99877777766643

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.23  E-value=4.8e-12  Score=143.74  Aligned_cols=71  Identities=39%  Similarity=0.922  Sum_probs=65.5

Q ss_pred             CCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCCCCceecCCCCeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         229 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       229 ~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                      ..+|+|.+|+||+..|+|||..||.|++||.+|.. |.+.+|+|.++.||+..++|||..||.+|+||.+|.
T Consensus       206 ~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~C~~-c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~  276 (565)
T 2xrc_A          206 DDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA-CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCA  276 (565)
T ss_dssp             ---CBCTTSCBCCTTSTTSSSCCSSSSSSSSSBSS-CSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             cCeeECCCCCccCHHHcCCCcccCCCCcccccccc-cCCCceecCCCcccCccccCCCcccCCCCccccCcC
Confidence            46699999999999999999999999999999974 999999999999999999999999999999999886

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.22  E-value=7.4e-09  Score=108.82  Aligned_cols=231  Identities=13%  Similarity=0.127  Sum_probs=152.1

Q ss_pred             eeeeee--ccceEEeecCC-Cce--EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEeCCCCC
Q psy8875         476 SLLFAR--KHDIRKISLDH-HEM--TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIEEDKTI  548 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~-~~~--~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~~~~~~  548 (734)
                      +++++.  ...|+.++++. ...  ...+.....+.+++|++..+.||++....+.|...+++  ++....+........
T Consensus         6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   85 (343)
T 1ri6_A            6 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   85 (343)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence            444442  45677777642 222  22234456788899999888899998776788776665  444332221112337


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEE-EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC--Cc
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVL-VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG--SH  624 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l-~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG--~~  624 (734)
                      |.+|++++.++.||++....+.|.+.++ +|.....+ .......|.+++++|...+||+++.+ ...|...+++.  ..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHL  164 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-CCEEEEEEecCCCce
Confidence            9999999888889999988888988887 33322222 12345679999999988899999843 36777777654  32


Q ss_pred             eEE----EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC--Cce---EEEEcCCC---CCCCCeEEEEE--CCE
Q psy8875         625 RNM----VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG--GNR---RLVLYSPQ---TLSHPFSISTF--EDW  690 (734)
Q Consensus       625 ~~~----lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG--~~~---~~i~~~~~---~~~~P~gl~v~--~~~  690 (734)
                      ...    +....-..|.+|++++.+++||++....+.|..++++.  ...   ..+...+.   ....|.+|++.  +.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            221    11122347899999988889999998889999999864  222   12221111   12356678884  568


Q ss_pred             EEEEeCCCCceEEEecc
Q psy8875         691 LYWSDWQQKAIYKANKF  707 (734)
Q Consensus       691 lywtd~~~~~v~~~~~~  707 (734)
                      ||++....+.|..++..
T Consensus       245 l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          245 LYACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCCEEEEEEEc
Confidence            99999887888777665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.21  E-value=1.3e-08  Score=109.65  Aligned_cols=233  Identities=12%  Similarity=0.118  Sum_probs=172.3

Q ss_pred             eeeee--eccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         476 SLLFA--RKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~--~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      .++++  ....|+.+++........+.....+.+++|++..+.||++....+.|+..++..+..... +. ....+.+++
T Consensus        45 ~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-~~-~~~~~~~~~  122 (391)
T 1l0q_A           45 KVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-VK-TGKSPLGLA  122 (391)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EE-CSSSEEEEE
T ss_pred             EEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE-Ee-CCCCcceEE
Confidence            34444  356788888876665555555558899999998889999988788999999885443333 33 345688999


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI  633 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l  633 (734)
                      +.+.++.||++....+.|.+.++........+. ....|.+++++|...+||++... .+.|...++........+. ..
T Consensus       123 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~-~~~v~~~d~~~~~~~~~~~-~~  199 (391)
T 1l0q_A          123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-VGRSPKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVIDTVK-VE  199 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CCSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEEE-CS
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe-cCCCcceEEECCCCCEEEEEeCC-CCEEEEEECCCCeEEEEEe-cC
Confidence            998888899999988999999987654444432 24578999999988889988743 4788888887654443333 34


Q ss_pred             CCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      ..|.++++++.+.+||++..  ..+.|..+++........+..   ...|.++++.  +.+||++....+.|..++..+|
T Consensus       200 ~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          200 AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec---CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            56889999988889999876  678999999876554444432   2357788884  5689999888889999998888


Q ss_pred             CceEEEe
Q psy8875         710 DNLTAIT  716 (734)
Q Consensus       710 ~~~~~l~  716 (734)
                      +.+..+.
T Consensus       277 ~~~~~~~  283 (391)
T 1l0q_A          277 TITATMA  283 (391)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEE
Confidence            8777664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.20  E-value=1.1e-08  Score=109.37  Aligned_cols=209  Identities=12%  Similarity=0.051  Sum_probs=139.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCC---------CCCccceeeeccCCcEEEEeCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEED---------KTIADGLAVDWIYSHIYWTDAH  567 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~---------~~~p~glAvD~~~~~lY~td~~  567 (734)
                      ....|..+++  ..+.||+++...+.|..++++....    ...+...+         ...|.++++++.++.||+++..
T Consensus        98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  175 (361)
T 3scy_A           98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG  175 (361)
T ss_dssp             SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC
Confidence            3457888888  4778999998888888888763221    11111111         1234679999888889999998


Q ss_pred             CCeEEEEeCCCCce-------------EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE----
Q psy8875         568 KNTIELANFEGTMR-------------KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV----  630 (734)
Q Consensus       568 ~~~I~~~~ldG~~~-------------~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~----  630 (734)
                      .+.|.+.+++....             ..+.......|++++++|...+||+++.. ...|...+++....+.+..    
T Consensus       176 ~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~~~~~g~~~~~~~~~~~  254 (361)
T 3scy_A          176 TDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI-GGTVIAFRYADGMLDEIQTVAAD  254 (361)
T ss_dssp             TTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TCEEEEEEEETTEEEEEEEEESC
T ss_pred             CCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC-CCeEEEEEecCCceEEeEEEecC
Confidence            88998887764321             22333456689999999988889999853 3677777775433222211    


Q ss_pred             -cCCCCceeEEEecCCCeEEEEeCC-CCeEEEEecC--CCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEE-
Q psy8875         631 -SDIKWPNGLTLDLVQRRLYWVDAK-LNEISSCDYN--GGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYK-  703 (734)
Q Consensus       631 -~~l~~P~glavD~~~~~LYw~D~~-~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~-  703 (734)
                       .....|.+|++++.+++||+++.. .+.|..++++  ....+.+..... ...|.+|++.  +.+||+++...+.|.. 
T Consensus       255 ~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~  333 (361)
T 3scy_A          255 TVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIF  333 (361)
T ss_dssp             SSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEE
T ss_pred             CCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEE
Confidence             123457899999999999999987 7888887775  233333322111 3578899984  5689999977666554 


Q ss_pred             -EeccCCCceE
Q psy8875         704 -ANKFTGDNLT  713 (734)
Q Consensus       704 -~~~~~G~~~~  713 (734)
                       ++..+|+...
T Consensus       334 ~~d~~~g~~~~  344 (361)
T 3scy_A          334 ERDQATGLLTD  344 (361)
T ss_dssp             EECTTTCCEEE
T ss_pred             EEECCCCcEee
Confidence             6666666443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.19  E-value=1e-08  Score=108.47  Aligned_cols=214  Identities=13%  Similarity=0.139  Sum_probs=145.7

Q ss_pred             eeeeeec--cceEEeecCCCceEEE-------ecCCcceEEEeeecc---CCeEEEEEe--CCCcEEEEecCCCC-----
Q psy8875         476 SLLFARK--HDIRKISLDHHEMTAI-------VNSTKSATAIDFVFR---TGMIFWSDI--SEKKIYKAPIDEGS-----  536 (734)
Q Consensus       476 ~l~~~~~--~~I~~i~l~~~~~~~l-------~~~~~~~~~i~~d~~---~~~lyw~d~--~~~~I~~~~l~~g~-----  536 (734)
                      .||++.+  ..|+++..++...+.+       ..+...+.+|++++.   ++.||++..  ...+|.|+.++++.     
T Consensus        44 ~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~  123 (347)
T 3das_A           44 DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQ  123 (347)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCC
T ss_pred             cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCccccc
Confidence            4666664  5688887654443332       124567899999983   788998653  45789999887521     


Q ss_pred             --ceEEEEe----CCCCCccceeeeccCCcEEEEeC-------------CCCeEEEEeCCCC--------ceEEEEcCCC
Q psy8875         537 --ERTVVIE----EDKTIADGLAVDWIYSHIYWTDA-------------HKNTIELANFEGT--------MRKVLVRSYL  589 (734)
Q Consensus       537 --~~~~~~~----~~~~~p~glAvD~~~~~lY~td~-------------~~~~I~~~~ldG~--------~~~~l~~~~l  589 (734)
                        ..++++.    ........|++++ .++||++..             ..++|.|++.+|+        ..+ ++...+
T Consensus       124 ~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~-i~a~G~  201 (347)
T 3das_A          124 LGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSP-VYSYGH  201 (347)
T ss_dssp             BCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCC-EEEBCC
T ss_pred             CCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCe-EEeeCC
Confidence              1334332    1234567799996 569999942             3589999999997        333 455688


Q ss_pred             CCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCce----------------EEE-EEcCCCCceeEEEecCCCeEEE
Q psy8875         590 DEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHR----------------NMV-IVSDIKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       590 ~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~----------------~~l-v~~~l~~P~glavD~~~~~LYw  650 (734)
                      .+|.+|++|| .|.||++|.+..  ..|.++. .|.+-                .++ .......|.||++.  .+.||.
T Consensus       202 RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~  277 (347)
T 3das_A          202 RNVQGLAWDD-KQRLFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWM  277 (347)
T ss_dssp             SBCCEEEECT-TCCEEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEE
T ss_pred             CCcceEEECC-CCCEEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceee
Confidence            9999999999 699999997642  3455543 22220                011 11112368899985  789999


Q ss_pred             EeCCCCeEEEEecCCCc----eEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC
Q psy8875         651 VDAKLNEISSCDYNGGN----RRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ  697 (734)
Q Consensus       651 ~D~~~~~I~~~~~dG~~----~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~  697 (734)
                      +.....+|.++.+++..    .+.++.  .....|.+|++ -.+.||+++..
T Consensus       278 ~~l~~~~l~~v~~~~~~~~~~~e~~l~--~~~gR~~dv~~~pDG~lyv~td~  327 (347)
T 3das_A          278 AGLRGERLWRIPLKGTAAAADPQAFLE--GEYGRLRTVAPAGGDKLWLVTSN  327 (347)
T ss_dssp             EESTTCSEEEEEEETTEESSCCEEEST--TTSSCEEEEEEEETTEEEEEECT
T ss_pred             ccccCCEEEEEEecCCceecceEEeec--CCCCCccEEEECCCCcEEEEEcC
Confidence            99999999999988753    234443  23568999998 57899999654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.19  E-value=4.7e-09  Score=110.33  Aligned_cols=199  Identities=12%  Similarity=0.057  Sum_probs=143.3

Q ss_pred             eeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcCC
Q psy8875         510 FVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRSY  588 (734)
Q Consensus       510 ~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~~  588 (734)
                      |+...+.+|+++...+.|..+++..+.....+ ......| ++++++.++.||++....++|.+.++..... ...+ ..
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~-~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~-~~   81 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQI-TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI-QE   81 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEE-ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-EE
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeE-EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec-cc
Confidence            44557889999999999999998865543333 3455567 9999988888999999889999999976553 2222 23


Q ss_pred             CCCcee-EEEeCCCCeEEEEecCCCc--eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe-EEEEecC
Q psy8875         589 LDEPRS-LALNPIDGWMYWSDWGQNA--KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE-ISSCDYN  664 (734)
Q Consensus       589 l~~P~~-iavD~~~g~LYwtd~~~~~--~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~-I~~~~~d  664 (734)
                      ...|.. ++++|...+||.+. ....  .|...+++.......+. .-..|+++++++.+++||+++...+. |..++++
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~  159 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVT-GLNHPFNMQSYSFLKNKFISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKID  159 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECC-CSSSSCEEEEEETTTTEEEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCCccceEECCCCCEEEEec-CCCCcccEEEEECCCCCeEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEEC
Confidence            457888 99999888899444 3223  89999887654443333 34568999999888899999987777 7776665


Q ss_pred             CCce-----EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCc---eEEEe
Q psy8875         665 GGNR-----RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDN---LTAIT  716 (734)
Q Consensus       665 G~~~-----~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~---~~~l~  716 (734)
                      ....     ..++   .....|.++++.  +.+||++....+.|..++..+++.   +..+.
T Consensus       160 ~~g~~~~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~  218 (331)
T 3u4y_A          160 ADGVLFDTGQEFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG  218 (331)
T ss_dssp             TTCCEEEEEEEEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred             CCCcEeecCCccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence            4322     1122   223568899984  457999999989999999888887   55554

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.19  E-value=1.5e-12  Score=125.11  Aligned_cols=106  Identities=23%  Similarity=0.375  Sum_probs=85.1

Q ss_pred             CCCCCCcCCCCCCCCCceec--CCCceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCC
Q psy8875          43 TSPTVYWRSKPCRNSTMFRC--TGGMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPD  120 (734)
Q Consensus        43 ~~~~~c~~~~~C~~~~~f~C--~~g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~d  120 (734)
                      .++.+|   .+|+ +.+|+|  .+|+|||..|+|||..||.|||||.+|...+|.+.+|+|.       +..      ..
T Consensus        47 sDE~~C---~~C~-~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c~-------~~~------~~  109 (215)
T 2gtl_O           47 VEELED---PSCD-EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGD-------VCF------DH  109 (215)
T ss_dssp             HHHHSC---CSSC-TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEEE-------EEE------ES
T ss_pred             hhhccC---CCCC-CcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceeee-------ECC------Cc
Confidence            345566   3698 899999  7999999999999999999999999999889999999883       211      23


Q ss_pred             CCCCCCcCCCCCCCcc--cccCcCCCC---ceEe-----------CccccCCCCCCCCCCCCCC
Q psy8875         121 CSDGSDEKSCKNRTCQ--ASEFRCGNN---RCIP-----------NHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       121 C~dg~de~~C~~~~C~--~~~f~C~~g---~Ci~-----------~~~~Cdg~~dC~dgsde~~  168 (734)
                      |.+..++..|. ..|.  ..+|.|.++   .||.           .+|.|||..+  ++++|..
T Consensus       110 C~~~~~~~~c~-~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~  170 (215)
T 2gtl_O          110 CTKRRPEHMTL-AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLT  170 (215)
T ss_dssp             SCSSCCSEEEE-EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEE
T ss_pred             ccCCCCCCcee-eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceee
Confidence            67777887773 3344  467889876   5888           8999999999  5888876

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.14  E-value=6.3e-12  Score=102.14  Aligned_cols=67  Identities=25%  Similarity=0.588  Sum_probs=56.3

Q ss_pred             CCcCCCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccc---cc-cCcccCCceeccCCCCeeeCCCCCC
Q psy8875          47 VYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKK---CQ-KRICGQEEFTCRSSPGECVPLTWMC  115 (734)
Q Consensus        47 ~c~~~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~---C~-~~~C~~~~~~C~~~~~~Ci~~~~~C  115 (734)
                      +| ...+|+ +++|+|. +|+|||..|+|||+.||.|||||..   |. ..+|.+.+|+|.+..++||+..+..
T Consensus         3 ~C-~~~~C~-~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g   74 (80)
T 2kny_A            3 KL-EGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRK   74 (80)
T ss_dssp             SC-SSCCCS-SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred             CC-CCCCCC-CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence            46 567898 8999998 6899999999999999999999984   65 3689999999987334799887654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.14  E-value=2.2e-11  Score=112.59  Aligned_cols=95  Identities=28%  Similarity=0.687  Sum_probs=75.0

Q ss_pred             CCCCCCCCC-------CCCc-cccccccCC-CCCc--CccccCCCcceeecCCCcEecCC--------CCccccccCcCC
Q psy8875         375 DCPLMQDED-------PTKC-GVDECAKDN-GGCL--HKCVDLPVGYMCECNEGYKLSSN--------RHTCIDIDECET  435 (734)
Q Consensus       375 ~C~~g~d~~-------~~~C-~~~eC~~~~-~~C~--~~C~~~~~~~~C~C~~G~~l~~~--------~~~C~~~~eC~~  435 (734)
                      .|+.||.+.       ...| +++||.... ..|.  +.|++++++|+|.|++||.+...        +..|+++|||..
T Consensus        22 ~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~  101 (143)
T 2bou_A           22 RCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS  101 (143)
T ss_dssp             EECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHH
T ss_pred             eCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccC
Confidence            666666542       3468 799998653 2575  58999999999999999998744        458999999975


Q ss_pred             -CCCcc--cceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         436 -PGSCS--QICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       436 -~~~C~--~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                       ..+|.  ++|+|+.++|+|.|++||.+....+. |..
T Consensus       102 ~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~-C~~  138 (143)
T 2bou_A          102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPN-NQK  138 (143)
T ss_dssp             TCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCS-SBT
T ss_pred             cCCCCCCCCEEECCCCCEEeeCCCCcccCCCCcc-Ccc
Confidence             46786  69999999999999999999877554 654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.13  E-value=1.6e-08  Score=106.87  Aligned_cols=209  Identities=11%  Similarity=0.115  Sum_probs=141.8

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIA  549 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p  549 (734)
                      .++|++  ...|+++++++.....+. ....+.+|++++ .+.+|++.  ...|+++++.++... .+....    ...|
T Consensus        62 ~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~-dg~l~v~~--~~gl~~~d~~~g~~~-~~~~~~~~~~~~~~  136 (326)
T 2ghs_A           62 TAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKIS-DSKQLIAS--DDGLFLRDTATGVLT-LHAELESDLPGNRS  136 (326)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEE-TTEEEEEE--TTEEEEEETTTCCEE-EEECSSTTCTTEEE
T ss_pred             EEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeC-CCeEEEEE--CCCEEEEECCCCcEE-EEeeCCCCCCCCCC
Confidence            455554  457888888776554432 235688899886 46777765  345999998755433 332211    2357


Q ss_pred             cceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--
Q psy8875         550 DGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--  621 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--  621 (734)
                      .++++|+ .++||+++..      .+.|++++ +|+... +. ..+..|.+|++++....|||++.. ...|++.+++  
T Consensus       137 ~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~-~~~I~~~d~~~~  211 (326)
T 2ghs_A          137 NDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDAR  211 (326)
T ss_dssp             EEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCTT
T ss_pred             CCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECC-CCEEEEEEcccc
Confidence            8899996 5678888753      36788888 655433 32 345679999999988889999854 4789999875  


Q ss_pred             -C-C--ceEEEEEc--CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEE
Q psy8875         622 -G-S--HRNMVIVS--DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLY  692 (734)
Q Consensus       622 -G-~--~~~~lv~~--~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~ly  692 (734)
                       | .  .++++...  ....|.+|++| ..++||++....+.|.+++.+|...+.+..   ....|.++++.   .+.||
T Consensus       212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~d-~~G~lwva~~~~~~v~~~d~~g~~~~~i~~---~~~~~~~~af~g~d~~~L~  287 (326)
T 2ghs_A          212 TGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEV---PGKQTTCPAFIGPDASRLL  287 (326)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEEC---SCSBEEEEEEESTTSCEEE
T ss_pred             cCCcccCceEEEECCCCCCCCCeeEEC-CCCCEEEEEeCCCEEEEECCCCCEEEEEEC---CCCCcEEEEEecCCCCEEE
Confidence             4 2  22334331  24569999999 566899998877899999997765555432   13468888885   25899


Q ss_pred             EEeCCC
Q psy8875         693 WSDWQQ  698 (734)
Q Consensus       693 wtd~~~  698 (734)
                      ++....
T Consensus       288 vt~~~~  293 (326)
T 2ghs_A          288 VTSARE  293 (326)
T ss_dssp             EEEBCT
T ss_pred             EEecCC
Confidence            987665

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.11  E-value=3.5e-11  Score=82.51  Aligned_cols=36  Identities=50%  Similarity=1.200  Sum_probs=33.9

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      +|+ ..+|+|.+|+||+..|+|||..||.|||||.+|
T Consensus         1 ~C~-~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCC-TTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCC-CCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence            476 899999999999999999999999999999987

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.11  E-value=9.2e-12  Score=101.18  Aligned_cols=67  Identities=33%  Similarity=0.731  Sum_probs=57.7

Q ss_pred             cccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCC---CC-CCCcccccCcCCC--CceEeCcccc
Q psy8875          87 KKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKS---CK-NRTCQASEFRCGN--NRCIPNHWQC  154 (734)
Q Consensus        87 ~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~---C~-~~~C~~~~f~C~~--g~Ci~~~~~C  154 (734)
                      .+|....|.+.+|+|.++ |+|||..|+|||..||.|||||.+   |. ..+|...+|+|.+  +.||+...+.
T Consensus         2 ~~C~~~~C~~~~f~C~~~-g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g   74 (80)
T 2kny_A            2 SKLEGKTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRK   74 (80)
T ss_dssp             CSCSSCCCSSSEEECTTS-SCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred             CCCCCCCCCCCceecCCC-CeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence            357777899999999864 799999999999999999999984   75 4689999999998  7899877653

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.10  E-value=1.5e-08  Score=102.53  Aligned_cols=179  Identities=15%  Similarity=0.188  Sum_probs=123.4

Q ss_pred             cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE--EEEeCCC-CCc-----ccee
Q psy8875         483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT--VVIEEDK-TIA-----DGLA  553 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~--~~~~~~~-~~p-----~glA  553 (734)
                      ..|.++++.+.....+ +.+...+.||+++. .+.+++++...++|+.+.++......  ..+...+ ..|     +|||
T Consensus        49 ~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA  127 (255)
T 3qqz_A           49 AAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLA  127 (255)
T ss_dssp             EEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEE
T ss_pred             CeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEE
Confidence            4688888885544444 24557899999984 56777788788889888876443211  1111111 234     8999


Q ss_pred             eeccCCcEEEEeCCCC-eEEEEe--CCCCceEEEEc------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         554 VDWIYSHIYWTDAHKN-TIELAN--FEGTMRKVLVR------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       554 vD~~~~~lY~td~~~~-~I~~~~--ldG~~~~~l~~------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      +|+.+++||.+..... .|+..+  +.+...+++-.      ..+..+.+|++||.++.||+... ....|..++.+|..
T Consensus       128 ~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~g~~  206 (255)
T 3qqz_A          128 YSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-ESRALQEVTLVGEV  206 (255)
T ss_dssp             EETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-TTTEEEEECTTCCE
T ss_pred             EeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-CCCeEEEEcCCCCE
Confidence            9999999999877644 677776  22222333311      24668999999999999999985 45899999999985


Q ss_pred             eEEEEEc--------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         625 RNMVIVS--------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       625 ~~~lv~~--------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      +..+...        .+.+|.|||+|+ +++||++.- -+.++++..++
T Consensus       207 ~~~~~L~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE-~n~~y~f~~~~  253 (255)
T 3qqz_A          207 IGEMSLTKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE-PNRFYRFTPQS  253 (255)
T ss_dssp             EEEEECSTTGGGCSSCCCSEEEEEECT-TCCEEEEET-TTEEEEEEC--
T ss_pred             EEEEEcCCccCCcccccCCCCeeEECC-CCCEEEEcC-CceEEEEEecC
Confidence            5544332        257899999995 668999954 46888887654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.10  E-value=5.4e-08  Score=101.89  Aligned_cols=225  Identities=8%  Similarity=-0.032  Sum_probs=149.7

Q ss_pred             ccceEEeecCCCceEEEecCCc---ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC----CCccceee
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTK---SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK----TIADGLAV  554 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~---~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~----~~p~glAv  554 (734)
                      ...|+.+++........+....   .+.++++++..+.||++....+.|+.+++..+.....+.....    ..|.++++
T Consensus        10 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             CCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence            4567777776555444333333   5888999988889999998888999999875544332221111    16889999


Q ss_pred             eccCCcEEEEeC-----------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         555 DWIYSHIYWTDA-----------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       555 D~~~~~lY~td~-----------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      ++.++.||++..           ..+.|.+.++.+......+.. ...|.+++++|...+||+++    ..|...++...
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~----~~i~~~d~~~~  164 (337)
T 1pby_B           90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLG----RDLHVMDPEAG  164 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEES----SSEEEEETTTT
T ss_pred             CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEeC----CeEEEEECCCC
Confidence            988889999962           248899999976544333322 45789999999888888874    23443333221


Q ss_pred             ceEE------------------------------------------------------EEE------------cCCCCce
Q psy8875         624 HRNM------------------------------------------------------VIV------------SDIKWPN  637 (734)
Q Consensus       624 ~~~~------------------------------------------------------lv~------------~~l~~P~  637 (734)
                      ....                                                      ++.            .....|.
T Consensus       165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            1110                                                      000            1113466


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +|++++.+++||.++   +.|..+++........+..   ...|.++++.  +.+||++ ...+.|..++..+++.+..+
T Consensus       245 ~~~~s~dg~~l~~~~---~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          245 STAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             EEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEEEE
T ss_pred             eEEECCCCCEEEEeC---CeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEE-cCCCcEEEEECcCCcEEEEE
Confidence            789988888899883   7899999876554433332   2468889884  4578887 55688999998888887777


Q ss_pred             ecc
Q psy8875         716 TGV  718 (734)
Q Consensus       716 ~~~  718 (734)
                      ...
T Consensus       318 ~~~  320 (337)
T 1pby_B          318 DLP  320 (337)
T ss_dssp             ECG
T ss_pred             EcC
Confidence            543

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.09  E-value=3.1e-11  Score=88.29  Aligned_cols=39  Identities=46%  Similarity=1.105  Sum_probs=36.7

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +.+|+ +.+|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus         4 p~~C~-~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~   42 (52)
T 2m0p_A            4 PASCL-DTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN   42 (52)
T ss_dssp             CCSSC-SSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred             CCCCC-CCceECCCCCEEecCccCCCCCCCCCCCccccch
Confidence            56898 8999999999999999999999999999999885

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.07  E-value=5.2e-11  Score=85.04  Aligned_cols=40  Identities=43%  Similarity=1.036  Sum_probs=34.0

Q ss_pred             CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875          50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +...|+ ..+|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus         4 ~~~~C~-~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            4 PAKECE-KDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             ----CC-TTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCCC-CCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence            356788 8999999999999999999999999999999884

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.06  E-value=9e-08  Score=102.08  Aligned_cols=222  Identities=10%  Similarity=0.067  Sum_probs=140.3

Q ss_pred             EEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeC---CCcEEEEecCC--CCceEEE-EeCCCCCccceeeeccC
Q psy8875         486 RKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDE--GSERTVV-IEEDKTIADGLAVDWIY  558 (734)
Q Consensus       486 ~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~--g~~~~~~-~~~~~~~p~glAvD~~~  558 (734)
                      ++++......+.+.. ....|..|+|++..+.||.++..   .+.|....++.  |....+. +......|..|++  .+
T Consensus        32 ~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg  109 (361)
T 3scy_A           32 FRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG  109 (361)
T ss_dssp             EEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS
T ss_pred             EEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC
Confidence            334444444433221 56678889999988889999873   45665544443  3222221 2223457888888  47


Q ss_pred             CcEEEEeCCCCeEEEEeCCC--Cce---EEEEc-C--------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         559 SHIYWTDAHKNTIELANFEG--TMR---KVLVR-S--------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG--~~~---~~l~~-~--------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      +.||+++...+.|.+.+++.  ...   ..+.. .        ...+|.+++++|...+||+++.+. ..|...+++...
T Consensus       110 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~~v~v~~~~~~~  188 (361)
T 3scy_A          110 KNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGT-DQIHKFNINPNA  188 (361)
T ss_dssp             SEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTC
T ss_pred             CEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCC-CEEEEEEEcCCC
Confidence            78999998888999888753  211   11111 1        123457899999888899999653 566666555322


Q ss_pred             -------e------EEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc---CCCCCCCCeEEEE--
Q psy8875         625 -------R------NMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY---SPQTLSHPFSIST--  686 (734)
Q Consensus       625 -------~------~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~---~~~~~~~P~gl~v--  686 (734)
                             .      ..+.......|+++++++.+++||+++...+.|..++++....+.+..   .......|.+|++  
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp  268 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP  268 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC
Confidence                   1      122223345689999998888999999888899999987544333321   1222345778888  


Q ss_pred             ECCEEEEEeCC-CCceEEEec--cCCC
Q psy8875         687 FEDWLYWSDWQ-QKAIYKANK--FTGD  710 (734)
Q Consensus       687 ~~~~lywtd~~-~~~v~~~~~--~~G~  710 (734)
                      .+.+||+++.. .+.|..++.  .+|+
T Consensus       269 dg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          269 DGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             TSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            46689999987 666555443  4555

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.06  E-value=8.9e-11  Score=83.35  Aligned_cols=39  Identities=31%  Similarity=0.838  Sum_probs=36.1

Q ss_pred             CCCCCCCCCceecCC-CceecCcCccCCCCCCCCCCccccc
Q psy8875          50 RSKPCRNSTMFRCTG-GMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~-g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      ....|+ ..+|+|.+ |+||+..|+|||+.||.|||||.+|
T Consensus         3 ~~~~C~-~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            3 QDVKCS-LGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             CSCSCC-TTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             cCCCCC-CCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            356788 89999999 9999999999999999999999987

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.06  E-value=7.4e-11  Score=84.27  Aligned_cols=38  Identities=39%  Similarity=0.952  Sum_probs=35.6

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      +.+|+ +.+|+|.+|+||+..|+|||+.||.|||||..|
T Consensus         3 ~~~C~-~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            3 PPQCQ-PGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCBTT-BTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCcCC-CCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence            45787 899999999999999999999999999999987

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.05  E-value=1.4e-07  Score=101.74  Aligned_cols=231  Identities=11%  Similarity=0.002  Sum_probs=142.0

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC---C---CCC
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE---D---KTI  548 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~---~---~~~  548 (734)
                      .|..+++........++....| +|++++..++||+++.         ..+.|..+++........+...   .   ...
T Consensus        48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~  126 (373)
T 2mad_H           48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY  126 (373)
T ss_pred             EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence            5677777655544444544567 9999999999999984         2456888887643332222111   0   246


Q ss_pred             ccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEE-EcCCCCCceeEEE-----------------------------
Q psy8875         549 ADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVL-VRSYLDEPRSLAL-----------------------------  597 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l-~~~~l~~P~~iav-----------------------------  597 (734)
                      |.++++++.++.||+++.. .+.|.+++ ........ +.    .|..+.+                             
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~  201 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEE
Confidence            8999999999999999875 67898888 54432211 21    1111111                             


Q ss_pred             -------------------eCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---------CCCCcee---EEEecCCC
Q psy8875         598 -------------------NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---------DIKWPNG---LTLDLVQR  646 (734)
Q Consensus       598 -------------------D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---------~l~~P~g---lavD~~~~  646 (734)
                                         .+..+.+||+..  .+.|+++++.+...+++-.-         ....|.|   +++++.++
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~  279 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcC--CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence                               112233333331  23556666554332221110         0113555   88998899


Q ss_pred             eEEEEeC---------CCCeEEEEecCCCce-EEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEeccCCCceE
Q psy8875         647 RLYWVDA---------KLNEISSCDYNGGNR-RLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKANKFTGDNLT  713 (734)
Q Consensus       647 ~LYw~D~---------~~~~I~~~~~dG~~~-~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~~~~G~~~~  713 (734)
                      +||++..         ..+.|+.+++..... +.|.    ....|.+|++.  +. .||.+.+..+.|..++..+++.+.
T Consensus       280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~----~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEe
Confidence            9999853         245899999876544 3332    12368999994  55 688888888999999999998887


Q ss_pred             EEecccccCCCccCC
Q psy8875         714 AITGVHQTHEPLNSP  728 (734)
Q Consensus       714 ~l~~~~~l~~P~~i~  728 (734)
                      .+...  -..|..+.
T Consensus       356 ~i~~v--G~~P~~~~  368 (373)
T 2mad_H          356 STVEL--GSGPQVLS  368 (373)
T ss_pred             eecCC--CCCCcEEE
Confidence            74322  24566553

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.04  E-value=1.3e-10  Score=82.05  Aligned_cols=38  Identities=47%  Similarity=1.210  Sum_probs=34.7

Q ss_pred             CCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          52 KPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        52 ~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      .+|. ..+|+|. +|+||+..|+|||..||.|||||.+|.
T Consensus         2 ~~C~-~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   40 (42)
T 1cr8_A            2 GGCH-TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSS-TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCC-CCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence            4687 8999998 499999999999999999999999885

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.04  E-value=3.3e-08  Score=100.50  Aligned_cols=182  Identities=12%  Similarity=0.085  Sum_probs=130.9

Q ss_pred             eeeeeec----cceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         476 SLLFARK----HDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       476 ~l~~~~~----~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      .||+++.    ..|+++++........+.  ....+.+++++  .++||++++..+.|+++++........ +..+  .|
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~-i~~g--~~  107 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN-FTHQ--MK  107 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE-EECC--SS
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE-EECC--CC
Confidence            5666653    579999998766554433  34456778887  689999999999999999874433333 2222  46


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      .|+++.+.+++||+++ +.++|.+.+...... ..+...    .+..|+++++.  .|+||.+.|. ...|.++++....
T Consensus       108 ~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-~~~V~vID~~tg~  183 (266)
T 2iwa_A          108 DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-TDCIARISAKDGT  183 (266)
T ss_dssp             SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEEETTTCC
T ss_pred             CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-CCeEEEEECCCCc
Confidence            6777777789999998 688999999876443 333221    23467888876  6899999876 4799999996544


Q ss_pred             eEEEEE-cC------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         625 RNMVIV-SD------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       625 ~~~lv~-~~------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ....+. ..            ...|+|||+|+.+++||++....++|+.+++...
T Consensus       184 V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          184 LLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            333332 21            2468999999999999999999999999987654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.03  E-value=4.7e-10  Score=126.35  Aligned_cols=87  Identities=30%  Similarity=0.718  Sum_probs=74.9

Q ss_pred             CCCCCCCCCCCCc-cccccccCCCCCcC-----ccccCCCcceee-cCCCcEecC-----------CCCccccccCcCC-
Q psy8875         375 DCPLMQDEDPTKC-GVDECAKDNGGCLH-----KCVDLPVGYMCE-CNEGYKLSS-----------NRHTCIDIDECET-  435 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~~-----~C~~~~~~~~C~-C~~G~~l~~-----------~~~~C~~~~eC~~-  435 (734)
                      .|+.||.+.+..| +++||...++.|.+     .|++++++|+|. |++||.+..           +++.|++++||.. 
T Consensus        29 ~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~  108 (634)
T 1yo8_A           29 FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDK  108 (634)
T ss_dssp             CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEEECCTTTTT
T ss_pred             cCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccccccccccCCCcccccccccCC
Confidence            6888888766778 79999988777865     899999999999 999998753           5678999999986 


Q ss_pred             CCCcc--cceeccC----CceEEecCCCeeeC
Q psy8875         436 PGSCS--QICLNEK----GGFKCECVAGYIKD  461 (734)
Q Consensus       436 ~~~C~--~~C~n~~----g~~~C~C~~gy~~~  461 (734)
                      +.+|.  ++|+++.    ++|+|.|++||.++
T Consensus       109 ~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~Gd  140 (634)
T 1yo8_A          109 THNCHKHAECIYLGHFSDPMYKCECQTGYAGD  140 (634)
T ss_dssp             CCCCCTTEEEEECCTTCSSSEEEEECTTEEES
T ss_pred             CcccccCccccccccccccceeeeccCCcccc
Confidence            47896  5899999    99999999999984

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.03  E-value=2.1e-07  Score=105.59  Aligned_cols=239  Identities=8%  Similarity=-0.019  Sum_probs=161.7

Q ss_pred             cceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEec--CCCCceEEEEeCCCCCc
Q psy8875         474 HASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPI--DEGSERTVVIEEDKTIA  549 (734)
Q Consensus       474 ~~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l--~~g~~~~~~~~~~~~~p  549 (734)
                      ...+++++  .+.|..+++........+.....+.++++++..++||.++.. +.|..+++  ..+..... +. ....|
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~-i~-~g~~p  224 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAE-IK-IGIEA  224 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEE-EE-CCSEE
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEE-Ee-cCCCc
Confidence            33555555  356888887766554444433348899999999999999866 88999998  43322222 23 34579


Q ss_pred             cceeeec----cCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-C----------CCCceeEEEeCCCCeEEEEecCCCce
Q psy8875         550 DGLAVDW----IYSHIYWTDAHKNTIELANFEGTMRKVLVRS-Y----------LDEPRSLALNPIDGWMYWSDWGQNAK  614 (734)
Q Consensus       550 ~glAvD~----~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-~----------l~~P~~iavD~~~g~LYwtd~~~~~~  614 (734)
                      ++|++++    .++.||+++...+.|.+.+.........+.. .          ...+.+|++.+..+.+|++... .++
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~-~g~  303 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGK  303 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTE
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC-CCe
Confidence            9999998    8899999998788999988754433333321 1          1257789999988888888754 578


Q ss_pred             EEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-E--CC
Q psy8875         615 IERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-F--ED  689 (734)
Q Consensus       615 I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-~--~~  689 (734)
                      |...++... ...+.....-.+|.++++++.+++||.+....++|..+++........+.. ...+|| .++.+ .  .+
T Consensus       304 i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~-g~~ph~g~g~~~~~p~~g  382 (543)
T 1nir_A          304 VLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV-GKTPHPGRGANFVHPKYG  382 (543)
T ss_dssp             EEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC-SSSBCCTTCEEEEETTTE
T ss_pred             EEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc-CCCCCCCCCcccCCCCCc
Confidence            998887542 222111123467999999998889999988888999999875544433332 234455 34444 2  47


Q ss_pred             EEEEEeC-CCCceEEEeccC-------CCceEEEec
Q psy8875         690 WLYWSDW-QQKAIYKANKFT-------GDNLTAITG  717 (734)
Q Consensus       690 ~lywtd~-~~~~v~~~~~~~-------G~~~~~l~~  717 (734)
                      .+|++.. +.+.|..++..+       ++.++.|..
T Consensus       383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            8888874 567787787766       555666653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.01  E-value=1.1e-07  Score=101.85  Aligned_cols=243  Identities=12%  Similarity=0.067  Sum_probs=153.6

Q ss_pred             eeeeeec------cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEE
Q psy8875         476 SLLFARK------HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTV  540 (734)
Q Consensus       476 ~l~~~~~------~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~  540 (734)
                      .+|+++.      ..|..|++........++....|. |++++..++||+++.         ..+.|..+++........
T Consensus        46 ~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~  124 (386)
T 3sjl_D           46 RVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD  124 (386)
T ss_dssp             EEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEE
T ss_pred             EEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEE
Confidence            4555553      368888887766655555555675 999999999999984         245688888875443333


Q ss_pred             E-EeCC-----CCCccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceE-EE---------------------------E
Q psy8875         541 V-IEED-----KTIADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRK-VL---------------------------V  585 (734)
Q Consensus       541 ~-~~~~-----~~~p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~-~l---------------------------~  585 (734)
                      + +..+     ...|.++++++.+++||+++.. .+.|.++++...... .|                           +
T Consensus       125 I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v  204 (386)
T 3sjl_D          125 IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKV  204 (386)
T ss_dssp             EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEE
T ss_pred             EECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEE
Confidence            3 2210     2379999999999999999864 566776665432211 11                           0


Q ss_pred             -cCC----------CC----Ccee--EEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------CCCce--
Q psy8875         586 -RSY----------LD----EPRS--LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---------IKWPN--  637 (734)
Q Consensus       586 -~~~----------l~----~P~~--iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---------l~~P~--  637 (734)
                       ...          ..    .|..  .+++...|+++|...  .++|+.+++.+...+++-.-.         --.|.  
T Consensus       205 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~  282 (386)
T 3sjl_D          205 AFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW  282 (386)
T ss_dssp             ECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred             ECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence             000          00    1111  234445666666543  367888888766544321100         00133  


Q ss_pred             -eEEEecCCCeEEEEeC---------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC-EEEEEeCCCCceEEE
Q psy8875         638 -GLTLDLVQRRLYWVDA---------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED-WLYWSDWQQKAIYKA  704 (734)
Q Consensus       638 -glavD~~~~~LYw~D~---------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~-~lywtd~~~~~v~~~  704 (734)
                       .+++++..++||++..         ..++|+.+|+....+..-+..   ...|.+|++  .+. +||.+++..+.|..+
T Consensus       283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsVi  359 (386)
T 3sjl_D          283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIH  359 (386)
T ss_dssp             SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEE
T ss_pred             ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEE
Confidence             3888999999999853         135899999866554333321   235778998  333 689999999999999


Q ss_pred             eccCCCceEEEecccccCCCccC
Q psy8875         705 NKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       705 ~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      +..+++.+..+..   ..+|..+
T Consensus       360 D~~t~k~~~~i~~---~~~p~~l  379 (386)
T 3sjl_D          360 DAESGEELRSVNQ---LGHGPQV  379 (386)
T ss_dssp             ETTTCCEEEEECC---CCSSCCE
T ss_pred             ECCCCcEEEEecC---CCCCcee
Confidence            9999987777754   4567655

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.01  E-value=9.3e-09  Score=113.73  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCC------CCCccceeeecc---CCcE
Q psy8875         492 HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEED------KTIADGLAVDWI---YSHI  561 (734)
Q Consensus       492 ~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~------~~~p~glAvD~~---~~~l  561 (734)
                      +-..+.++..+..|.+|++++ .++||+++...++|+++....|....+. +...      ...+.|||+++.   ++.|
T Consensus        16 gf~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           16 NFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             TSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CeEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            345566777899999999997 5789999977678999986544433222 1211      233459999986   8999


Q ss_pred             EEEeCC------------CCeEEEEeCCCC-----ceEEEEc----CCCCCceeEEEeCCCCeEEEEecC----------
Q psy8875         562 YWTDAH------------KNTIELANFEGT-----MRKVLVR----SYLDEPRSLALNPIDGWMYWSDWG----------  610 (734)
Q Consensus       562 Y~td~~------------~~~I~~~~ldG~-----~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~----------  610 (734)
                      |++...            ..+|.++.+++.     ..++|+.    .....+.+|+++| .|+||++...          
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~  173 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF  173 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccc
Confidence            999863            357888887542     2344442    2346799999998 6799999521          


Q ss_pred             ---------------------CCceEEEeccCCCc----------eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         611 ---------------------QNAKIERAGMDGSH----------RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       611 ---------------------~~~~I~~~~ldG~~----------~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                                           ..++|.|++.||+.          +..++...+..|.||++|+ .++||++|.+.+
T Consensus       174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~  249 (454)
T 1cru_A          174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (454)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             cccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCC
Confidence                                 13689999999982          2335667889999999997 799999996544

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.01  E-value=5.1e-10  Score=102.27  Aligned_cols=82  Identities=27%  Similarity=0.635  Sum_probs=62.4

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc-cccCcCCCCCcc--cceeccCCceE
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI-DIDECETPGSCS--QICLNEKGGFK  451 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~--~~C~n~~g~~~  451 (734)
                      .|++||.+....-++++|...+....+.|++++++|+|.|++||.    +..|+ ++++|.. .+|.  ++|+++.++|+
T Consensus        31 ~C~~Gy~G~~C~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~C~~~~~~C~~-~~C~~~g~C~~~~g~~~  105 (135)
T 2vj3_A           31 QCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYE----GVHCEVNTDECAS-SPCLHNGRCLDKINEFQ  105 (135)
T ss_dssp             ECCTTEESTTSCEECCTTTTCCCCSSCEEEECSSCEEEECCTTEE----SSSSCEECCTTTT-CCSTTTCEEEECSSCEE
T ss_pred             ECCCCCcCCcccccCccCCCCCCCCCCEEeCCCCCceeeCCCCCc----CCcceecCCcccC-CCcCCCCEeECCCCCeE
Confidence            455555544322257788765444456899999999999999995    67886 7899974 4675  48999999999


Q ss_pred             EecCCCeeeC
Q psy8875         452 CECVAGYIKD  461 (734)
Q Consensus       452 C~C~~gy~~~  461 (734)
                      |.|++||.+.
T Consensus       106 C~C~~G~~G~  115 (135)
T 2vj3_A          106 CECPTGFTGH  115 (135)
T ss_dssp             EECCTTEESS
T ss_pred             EECCCCCcCC
Confidence            9999999874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.00  E-value=1.9e-07  Score=100.25  Aligned_cols=236  Identities=10%  Similarity=0.005  Sum_probs=141.1

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC-----CCCC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE-----DKTI  548 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~-----~~~~  548 (734)
                      ..|+.+++........++....| +|++++..++||+++.         ..+.|..+++..+.....+...     ....
T Consensus        31 ~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~  109 (361)
T 2oiz_A           31 SRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNY  109 (361)
T ss_dssp             CEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCC
T ss_pred             CeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCC
Confidence            36788887655554444555677 9999999999999985         2346888887644433332211     1246


Q ss_pred             ccceeeeccCCcEEEEeCC-CCeEEEEeCCCCceEEE-EcCCC-----CC----ceeEEEeCCCCeEEEEecCC------
Q psy8875         549 ADGLAVDWIYSHIYWTDAH-KNTIELANFEGTMRKVL-VRSYL-----DE----PRSLALNPIDGWMYWSDWGQ------  611 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l-~~~~l-----~~----P~~iavD~~~g~LYwtd~~~------  611 (734)
                      |.+|++++.++.||+++.. .+.|.+.++........ +....     ..    +.-+++.+....++|.-...      
T Consensus       110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence            9999999999999999875 67898888865432211 11100     11    22244444333333332110      


Q ss_pred             ------------------------------CceEEEeccCCCceEEEEEcC--------C-CCcee---EEEecCCCeEE
Q psy8875         612 ------------------------------NAKIERAGMDGSHRNMVIVSD--------I-KWPNG---LTLDLVQRRLY  649 (734)
Q Consensus       612 ------------------------------~~~I~~~~ldG~~~~~lv~~~--------l-~~P~g---lavD~~~~~LY  649 (734)
                                                    .++|+.+++.+....++-.-.        . ..|.|   +++++.+++||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence                                          122344444332222111100        0 12444   89998899999


Q ss_pred             EEeC----------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCC--CceEEE
Q psy8875         650 WVDA----------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTG--DNLTAI  715 (734)
Q Consensus       650 w~D~----------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G--~~~~~l  715 (734)
                      ++..          ..+.|+.+++........+...   . |.+|++  .+.+||.+.+  +.|..++..+|  +.+..+
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~-p~~ia~spdg~~l~v~n~--~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D-ALSMTIDQQRNLMLTLDG--GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T-CCEEEEETTTTEEEEECS--SCEEEEECSSSSCEEEEEE
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C-eeEEEECCCCCEEEEeCC--CeEEEEECCCCcceeeEEe
Confidence            9853          1358999997655443333321   2 999999  4678999886  88999998888  666665


Q ss_pred             ecccccCCCccC
Q psy8875         716 TGVHQTHEPLNS  727 (734)
Q Consensus       716 ~~~~~l~~P~~i  727 (734)
                      ...  -..|..+
T Consensus       344 ~~~--G~~P~~~  353 (361)
T 2oiz_A          344 EGA--AEASLQV  353 (361)
T ss_dssp             TTS--CSSEEEE
T ss_pred             ccC--CCCcEEE
Confidence            322  3456555

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.00  E-value=2.2e-07  Score=101.33  Aligned_cols=236  Identities=12%  Similarity=0.107  Sum_probs=166.2

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEec------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVN------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK  546 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~  546 (734)
                      ..++++.  ...|+..++.......+..      ....+.++++.+ .+.+|++....+.|+..++..+.....+ ....
T Consensus       134 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~-~~~~  211 (433)
T 3bws_A          134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATV-DLTG  211 (433)
T ss_dssp             SEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEE-ECSS
T ss_pred             CeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEE-cCCC
Confidence            3455544  3458888887655544322      233567788854 6788899888899999998855443333 3345


Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------CceEEEecc
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------NAKIERAGM  620 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~~~I~~~~l  620 (734)
                      ..|.++++++.++.||++....+.|.+.++........+ .....|.+++++|...+||.+..+.      .+.|...++
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT-DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC-CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe-cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            678899999988899999988899999998755443333 3345689999999888888887531      357888888


Q ss_pred             CCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC
Q psy8875         621 DGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ  698 (734)
Q Consensus       621 dG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~  698 (734)
                      ........+. ....|.++++++.+++||++....+.|..+++++......+.   ....|.+|++.  +.+||.+....
T Consensus       291 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          291 DKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP---VFDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             TTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE---CSSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec---CCCCCCeEEEcCCCCEEEEEecCC
Confidence            6544333321 123688999998888999999889999999988655444443   23567888884  45788888764


Q ss_pred             --------------CceEEEeccCCCceEEEec
Q psy8875         699 --------------KAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       699 --------------~~v~~~~~~~G~~~~~l~~  717 (734)
                                    +.|+.++..+++.+..+..
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEecC
Confidence                          3788888888877766653

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.98  E-value=2e-10  Score=83.66  Aligned_cols=39  Identities=44%  Similarity=0.968  Sum_probs=36.4

Q ss_pred             CCCCCCCceecCCC-ceecCcCccCCCCCCCCCCccccccc
Q psy8875          52 KPCRNSTMFRCTGG-MCIPSTWVCDGQNDCPDGVDEKKCQK   91 (734)
Q Consensus        52 ~~C~~~~~f~C~~g-~Ci~~~~~cdg~~dC~dg~de~~C~~   91 (734)
                      .+|. +.+|+|.+| +||+..|+|||+.||.|||||.+|..
T Consensus         5 ~~C~-~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~~   44 (48)
T 2i1p_A            5 LNCT-SAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT   44 (48)
T ss_dssp             CCCC-SSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSCS
T ss_pred             CCCC-CCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCCC
Confidence            6898 899999999 89999999999999999999999853

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.98  E-value=2e-10  Score=83.34  Aligned_cols=38  Identities=47%  Similarity=1.148  Sum_probs=34.3

Q ss_pred             CCCCCCCCceecC-----CCceecCcCccCCCCCCCCCCccccc
Q psy8875          51 SKPCRNSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        51 ~~~C~~~~~f~C~-----~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      ..+|+ +.+|+|.     +|+|||..|+|||..||.|||||.+|
T Consensus         4 ~~~C~-~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A            4 FGSCP-PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             --CCS-TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCCC-CCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence            45788 8999998     79999999999999999999999988

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=4.2e-08  Score=105.13  Aligned_cols=231  Identities=5%  Similarity=-0.106  Sum_probs=148.5

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEe---------CCCcEEEEecCCCCceEEEEeC-C-----CCC
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDI---------SEKKIYKAPIDEGSERTVVIEE-D-----KTI  548 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~---------~~~~I~~~~l~~g~~~~~~~~~-~-----~~~  548 (734)
                      .|..|+++.......++....| ++++++..++||+++.         ..+.|..+++..+.....+.-. .     ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~  125 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR  125 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred             eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence            6677887776665555555678 8999999999999984         3567999998865544333221 1     257


Q ss_pred             ccceeeeccCCcEEEEeCC-CCeEEE--EeCCCCceEEEEcC----------------------------C---------
Q psy8875         549 ADGLAVDWIYSHIYWTDAH-KNTIEL--ANFEGTMRKVLVRS----------------------------Y---------  588 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~-~~~I~~--~~ldG~~~~~l~~~----------------------------~---------  588 (734)
                      |.+|++++.++.||+++.. ...|.+  .++..  ...+-..                            .         
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~  203 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG  203 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence            9999999999999999875 466766  54432  1111100                            0         


Q ss_pred             ---------CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------CCCcee---EEEecCCCe
Q psy8875         589 ---------LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---------IKWPNG---LTLDLVQRR  647 (734)
Q Consensus       589 ---------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---------l~~P~g---lavD~~~~~  647 (734)
                               ...|.  + .+..+.+||+..   +.|..+++.+...+++..-.         ...|.|   +++++.+++
T Consensus       204 ~~~t~~i~vg~~P~--~-~~~~~~~~~vs~---~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~  277 (368)
T 1mda_H          204 AQCTGAQNCSSQAA--Q-ANYPGMLVWAVA---SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDG  277 (368)
T ss_dssp             CCSCTTSCBCSCCE--E-ETTTTEEEECBS---SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTE
T ss_pred             EEeeeeeeCCCCcc--c-cccCCEEEEEcC---CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCE
Confidence                     01222  2 344566677763   56777777654444322111         123566   889999999


Q ss_pred             EEEEeC---C-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeC-CCCceEEEeccCCCceEEEe
Q psy8875         648 LYWVDA---K-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDW-QQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       648 LYw~D~---~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~-~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ||++..   +     .+.+..+|+....+..-+.   ....|.+|++.  +.+||++.. ..+.|..++..+++.++.|.
T Consensus       278 lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~---vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          278 IMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             EEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             EEEEeccccCcccccCCCEEEEECCCCeEEEEEE---CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            999864   2     2456677765543222111   12369999994  456999998 78999999998888777765


Q ss_pred             cccccCCCccCCC
Q psy8875         717 GVHQTHEPLNSPG  729 (734)
Q Consensus       717 ~~~~l~~P~~i~~  729 (734)
                      .   ...|.+++.
T Consensus       355 v---g~~P~~i~~  364 (368)
T 1mda_H          355 L---DKGPESLSV  364 (368)
T ss_dssp             C---CSCCCEEEC
T ss_pred             C---CCCCCEEEe
Confidence            3   456666643

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.97  E-value=1.3e-07  Score=99.50  Aligned_cols=222  Identities=9%  Similarity=0.006  Sum_probs=143.2

Q ss_pred             ccceEEeecCCCceEEEecCCc--ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-----CCCccceee
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTK--SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-----KTIADGLAV  554 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~--~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-----~~~p~glAv  554 (734)
                      ...|+.+++........+....  .+.++++++..+.+|++....+.|+.+++..+.....+....     ...|.++++
T Consensus        20 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~   99 (349)
T 1jmx_B           20 PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAI   99 (349)
T ss_dssp             TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEE
Confidence            5678888887655544433333  688899998788899998888899999987544332222111     233889999


Q ss_pred             eccCCcEEEEeCC-----------CCeEEEEeCCCCc-eE--EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875         555 DWIYSHIYWTDAH-----------KNTIELANFEGTM-RK--VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM  620 (734)
Q Consensus       555 D~~~~~lY~td~~-----------~~~I~~~~ldG~~-~~--~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l  620 (734)
                      ++.++.||++...           .+.|.+.++.... .+  ... .....+.+++++|... ||++.    ..|.+.++
T Consensus       100 spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~----~~i~~~d~  173 (349)
T 1jmx_B          100 SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAG----PDIYKMDV  173 (349)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEES----SSEEEECT
T ss_pred             CCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEcc----CcEEEEeC
Confidence            9988899999854           5789999986521 11  112 1223578889998655 88754    23666665


Q ss_pred             CCCceEEEEEcC--------------------------------------------------------------------
Q psy8875         621 DGSHRNMVIVSD--------------------------------------------------------------------  632 (734)
Q Consensus       621 dG~~~~~lv~~~--------------------------------------------------------------------  632 (734)
                      ........+...                                                                    
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (349)
T 1jmx_B          174 KTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADL  253 (349)
T ss_dssp             TTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             CCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccC
Confidence            432221111111                                                                    


Q ss_pred             CCCceeEEEec-CCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCC
Q psy8875         633 IKWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       633 l~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      -..|.++++++ .+++||++   .+.|..+++........+..   ...|.++++.  +++||.+ ...+.|..++..++
T Consensus       254 ~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~  326 (349)
T 1jmx_B          254 TELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL  326 (349)
T ss_dssp             SSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT
T ss_pred             CCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcC---CCCccceEECCCCCEEEEe-cCCCeEEEEecccc
Confidence            01355667777 77788888   56899999876554333322   2457888884  4678875 44588988888888


Q ss_pred             CceEEEe
Q psy8875         710 DNLTAIT  716 (734)
Q Consensus       710 ~~~~~l~  716 (734)
                      +.+..+.
T Consensus       327 ~~~~~~~  333 (349)
T 1jmx_B          327 EKVKNIK  333 (349)
T ss_dssp             EEEEEEE
T ss_pred             ceeeeee
Confidence            7766664

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.96  E-value=8.5e-11  Score=111.13  Aligned_cols=62  Identities=32%  Similarity=0.744  Sum_probs=51.1

Q ss_pred             CCCcceeecCC--CcEecCCCCccccccCcCC-CCCccc-ceeccCCceEEecCCCeeeCCCCCccc
Q psy8875         406 LPVGYMCECNE--GYKLSSNRHTCIDIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC  468 (734)
Q Consensus       406 ~~~~~~C~C~~--G~~l~~~~~~C~~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~~~~t~C  468 (734)
                      ..++|+|.|++  ||.+..+++.|++||||+. +++|.+ +|+|+.++|+|.|++||.+..++++ |
T Consensus        96 ~~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~-C  161 (162)
T 1uzk_A           96 NTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRV-C  161 (162)
T ss_dssp             TSHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCB-B
T ss_pred             CCCCceeECCCCCCcccCCCCCccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCc-c
Confidence            34567777776  7888777789999999975 467874 9999999999999999999887665 5

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.96  E-value=4.4e-08  Score=101.67  Aligned_cols=165  Identities=11%  Similarity=-0.033  Sum_probs=120.0

Q ss_pred             EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC-------CCceeEEE---eCCCCeEEE-Ee
Q psy8875         540 VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL-------DEPRSLAL---NPIDGWMYW-SD  608 (734)
Q Consensus       540 ~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l-------~~P~~iav---D~~~g~LYw-td  608 (734)
                      +.+......|++++.|...+.+|+++..+++|.++++++.....+....+       ..|.||.+   |+. ++|++ ++
T Consensus         6 i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~   84 (334)
T 2p9w_A            6 IDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMK   84 (334)
T ss_dssp             EEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEE
T ss_pred             EEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEc
Confidence            33444556799999998899999999999999999998654433332332       25789999   787 88887 44


Q ss_pred             cC-----------CCceEEEeccC----CCceEEEEEc------------CCCCceeEEEecCCCeEEEEeCCC-CeEEE
Q psy8875         609 WG-----------QNAKIERAGMD----GSHRNMVIVS------------DIKWPNGLTLDLVQRRLYWVDAKL-NEISS  660 (734)
Q Consensus       609 ~~-----------~~~~I~~~~ld----G~~~~~lv~~------------~l~~P~glavD~~~~~LYw~D~~~-~~I~~  660 (734)
                      .+           ....|.+.+++    |.....+-..            ....+++|++| ..+++|++++.. +.|++
T Consensus        85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD-~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD-RDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC-TTSCEEEEEEESSCEEEE
T ss_pred             ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC-CCCCEEEeCCCCCCeEEE
Confidence            21           13679999998    4443332211            22358999999 689999999988 99999


Q ss_pred             EecCCCceEEEEcCC---CCCCCCeEEEEE--CCEEEEEeCCCCceEEEecc
Q psy8875         661 CDYNGGNRRLVLYSP---QTLSHPFSISTF--EDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       661 ~~~dG~~~~~i~~~~---~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~  707 (734)
                      ++.+|+....+....   .....+.||++.  +..|++++. .++|++++..
T Consensus       164 V~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~  214 (334)
T 2p9w_A          164 VSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVS  214 (334)
T ss_dssp             ECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECS
T ss_pred             EeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCC
Confidence            999999766554321   112336799996  667888888 8999999865

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.96  E-value=2.7e-07  Score=98.88  Aligned_cols=210  Identities=11%  Similarity=0.046  Sum_probs=131.3

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecC-CCCceEEEEeCCCCCccceeeeccCCcEE--EEe-------C----
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPID-EGSERTVVIEEDKTIADGLAVDWIYSHIY--WTD-------A----  566 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~-~g~~~~~~~~~~~~~p~glAvD~~~~~lY--~td-------~----  566 (734)
                      ....|..|++++..+.||.++..  .|..++++ .|....+........|..+++++.++.||  .++       .    
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            34578899999988889988875  67766664 34332221111113488899998777533  343       1    


Q ss_pred             -CCCeEEEEeCC--CCceEEEEc---CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE-EEEc--CCCC
Q psy8875         567 -HKNTIELANFE--GTMRKVLVR---SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM-VIVS--DIKW  635 (734)
Q Consensus       567 -~~~~I~~~~ld--G~~~~~l~~---~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~-lv~~--~l~~  635 (734)
                       ..+.|.+.+++  |+....+..   .....|.+++++|...+||.++.+. ..|...+++  |....+ .+..  ....
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA-NKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC-CEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence             35667776664  554333321   2456899999999888899998653 688888876  432211 1221  1456


Q ss_pred             ceeEEEecCCCeEEEEeCCCCeEEEEecC---CCce---EEEEcCCCCC---C-------CCeEEE-E--ECCEEEEEeC
Q psy8875         636 PNGLTLDLVQRRLYWVDAKLNEISSCDYN---GGNR---RLVLYSPQTL---S-------HPFSIS-T--FEDWLYWSDW  696 (734)
Q Consensus       636 P~glavD~~~~~LYw~D~~~~~I~~~~~d---G~~~---~~i~~~~~~~---~-------~P~gl~-v--~~~~lywtd~  696 (734)
                      |.+|++++.+++||++....+.|..++++   |...   ..+...+...   .       .|.+|+ +  .+.+||+++.
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            99999999888999998877888877765   3321   1222111111   1       478888 7  4568999987


Q ss_pred             CCC-----ceEEEecc-CCCceE
Q psy8875         697 QQK-----AIYKANKF-TGDNLT  713 (734)
Q Consensus       697 ~~~-----~v~~~~~~-~G~~~~  713 (734)
                      +.+     .|..++.. +|+...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~  297 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEE
T ss_pred             CCCCCCCCeEEEEEECCCCCEEE
Confidence            654     55555432 565443

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.96  E-value=3.4e-10  Score=82.83  Aligned_cols=39  Identities=41%  Similarity=1.105  Sum_probs=35.9

Q ss_pred             CCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          51 SKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        51 ~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      ..+|+ +.+|+|. +|+||+..|+|||+.||.|||||.+|.
T Consensus         4 ~~~C~-~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~   43 (50)
T 2knx_A            4 GKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA   43 (50)
T ss_dssp             TCTTC-TTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred             CCCCC-CCcEEcCCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence            56788 8999995 999999999999999999999999884

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.96  E-value=2.6e-10  Score=79.06  Aligned_cols=36  Identities=47%  Similarity=1.177  Sum_probs=33.2

Q ss_pred             CCCCCceecCC--CceecCcCccCCCCCCCCCCcccccc
Q psy8875          54 CRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        54 C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      |+ +.+|+|.+  |+|||..|+|||+.||.|||||.+|.
T Consensus         1 C~-~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            1 CR-IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CC-TTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             CC-CCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            55 78999997  89999999999999999999999884

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.95  E-value=4e-10  Score=104.11  Aligned_cols=82  Identities=27%  Similarity=0.583  Sum_probs=64.4

Q ss_pred             Cc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcCC-CCCcccce-eccCCceEEecCCCeeeCC
Q psy8875         386 KC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET-PGSCSQIC-LNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       386 ~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C~~~C-~n~~g~~~C~C~~gy~~~~  462 (734)
                      .| ++|+|..++..-...|++++++|+|.|++||.    ++.|.++|+|.. ++.|.++| +|+.|+|.|.|++||.+..
T Consensus        44 ~c~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~----G~~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~  119 (146)
T 1x7a_L           44 QYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFE----GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAP  119 (146)
T ss_dssp             ------CCSSCSSCTTCEEEECSSCEEEECCSSEE----STTTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECT
T ss_pred             cCCCcCcCCCCCCCCCCEeECCCCCEEEecCCCCc----CCcCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCC
Confidence            35 78899865433335899999999999999994    789999999986 46899999 9999999999999999987


Q ss_pred             CCCccccccc
Q psy8875         463 HHPTQCKAAE  472 (734)
Q Consensus       463 ~~~t~C~~~~  472 (734)
                      ++++ |..+.
T Consensus       120 dG~~-C~~~~  128 (146)
T 1x7a_L          120 DQKS-CKPAV  128 (146)
T ss_dssp             TSSS-EEECS
T ss_pred             CCCc-CCCCC
Confidence            7655 87643

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.95  E-value=2.5e-10  Score=81.48  Aligned_cols=37  Identities=51%  Similarity=1.183  Sum_probs=34.7

Q ss_pred             CCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          52 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        52 ~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      .+|+ +.+|+|.+|+|||..|+|||+.||.|||||.+|
T Consensus         3 ~~C~-~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            3 HSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSC-TTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCC-CCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence            4687 899999999999999999999999999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.95  E-value=9.2e-08  Score=96.19  Aligned_cols=179  Identities=15%  Similarity=0.138  Sum_probs=123.3

Q ss_pred             eeeeeecc----ceEEeecCCCceEEEecCCcc--eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         476 SLLFARKH----DIRKISLDHHEMTAIVNSTKS--ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       476 ~l~~~~~~----~I~~i~l~~~~~~~l~~~~~~--~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      .||.+.+.    .|+++++.......-+.-...  ..||+++  .++||.+++..+.++++++........+-.    .+
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~----~~  127 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNY----DG  127 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEEC----SS
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEEC----CC
Confidence            56666644    689999887665444332233  4667776  789999999999999999885544333322    13


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      .|.++.+.++.||.+|. .++|.+.+... +....+...    .+..++.|..  ..|+||...|.. ..|.+++..-..
T Consensus       128 eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~~-~~I~vIDp~tG~  203 (262)
T 3nol_A          128 EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQT-NKIVRIDPETGK  203 (262)
T ss_dssp             CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTS-SEEEEECTTTCB
T ss_pred             CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--ECCEEEEEEccC-CeEEEEECCCCc
Confidence            44555555889999985 78999999874 333333321    2344555665  479999999864 699999985444


Q ss_pred             eEEEEE-cC-----------CCCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875         625 RNMVIV-SD-----------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN  664 (734)
Q Consensus       625 ~~~lv~-~~-----------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d  664 (734)
                      ....+. ..           ..-|||||+|+.+++||++--.-.+++.+.+.
T Consensus       204 V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~~  255 (262)
T 3nol_A          204 VTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITLT  255 (262)
T ss_dssp             EEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             EEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEEe
Confidence            433333 21           23689999999999999999877888887763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.94  E-value=2.5e-07  Score=98.21  Aligned_cols=162  Identities=12%  Similarity=0.113  Sum_probs=107.8

Q ss_pred             ccceEEeecCCC--ceEEEe-cC------CcceEEEeeecc---CCeEEEEEeCC--Cc--EEEEecCCCCceEEEE---
Q psy8875         482 KHDIRKISLDHH--EMTAIV-NS------TKSATAIDFVFR---TGMIFWSDISE--KK--IYKAPIDEGSERTVVI---  542 (734)
Q Consensus       482 ~~~I~~i~l~~~--~~~~l~-~~------~~~~~~i~~d~~---~~~lyw~d~~~--~~--I~~~~l~~g~~~~~~~---  542 (734)
                      ...|++++++..  ....+. .+      ..+|.||++...   +.+||+++-..  .+  |++++.++  ...+++   
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~--~~~~~~~~~  159 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE--KSLLHLKTI  159 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT--TEEEEEEEE
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC--CEEEEEecc
Confidence            456778877632  222221 12      248999998652   34799998762  33  56666552  222222   


Q ss_pred             -eCCCCCccceeeeccCCcEEEEeC-----------------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeE
Q psy8875         543 -EEDKTIADGLAVDWIYSHIYWTDA-----------------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWM  604 (734)
Q Consensus       543 -~~~~~~p~glAvD~~~~~lY~td~-----------------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~L  604 (734)
                       ...+..|..+++|. .+.+|+++.                 ..++|++.+..  ..+++ ...+..|+||+++|...+|
T Consensus       160 ~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~-~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          160 RHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVV-AEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEE-EEEESSEEEEEECTTSSEE
T ss_pred             ccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEe-ecCCcccCcceECCCCCEE
Confidence             23577899999995 577887764                 23678888763  33333 3678899999999998999


Q ss_pred             EEEecCCCceEEEeccCC--Cc--eEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         605 YWSDWGQNAKIERAGMDG--SH--RNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       605 Ywtd~~~~~~I~~~~ldG--~~--~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      |++|.. ..+|++.++++  +.  ++++  .....|.||++|..+++||++.
T Consensus       236 Yvadt~-~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          236 YIAELL-AHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEGG-GTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCEEEEE
T ss_pred             EEEeCC-CCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcEEEEe
Confidence            999965 47999998864  32  2222  2346799999995468898864

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.94  E-value=9.5e-13  Score=131.53  Aligned_cols=209  Identities=10%  Similarity=0.006  Sum_probs=129.3

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCcccccc------CCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCC
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAE------AGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDE  258 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~------~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de  258 (734)
                      ..+|.|+.+|.+...+|.|+||.||.+..++.+.++      +.+.+|.+       .++|+                .+
T Consensus        37 ~~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~n-------ggtc~----------------~G   93 (267)
T 4fbr_A           37 DIKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQP-------GGVWV----------------LG   93 (267)
T ss_dssp             EEECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEE-------EEEEE----------------CC
T ss_pred             CCCcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccC-------CCeee----------------cc
Confidence            346777778877778999999999999999887776      44445541       22332                12


Q ss_pred             CCCC--CCCCCCceecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCCC--------CCCCceecCCCCcccccccccc
Q psy8875         259 KKCH--ETCRSDEFTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPVK--------CTAGQFTCQNLTACIPDKWVCD  325 (734)
Q Consensus       259 ~~C~--~~C~~~~~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~~--------C~~~~~~C~~~~~Ci~~~~~Cd  325 (734)
                      .+|.  .+|.+  .+|.|| +|++.  ++.|    +|+.|+.+.+|+...        |.+  -+|.++++|+. +.+|+
T Consensus        94 ~~c~~~~eC~s--~pC~ngG~C~~~~~sy~C----~C~~Gf~G~~Ce~~~d~C~n~~~c~s--~pC~ngg~c~~-G~~c~  164 (267)
T 4fbr_A           94 ARDKQNIVAVS--IKSNDGGKTLTGTTTYNG----EGPIGFKSEVTDGDTYSVENQWGGSA--APWHSGGVWVL-GTRGK  164 (267)
T ss_dssp             CCSSCCEEEEE--EECSSTTSEEEEEEEETT----SCCEEEEEEECCCCEEEEEEECSSTT--SCCEEEEEEEC-CSSTT
T ss_pred             CccccccccCC--CCCCCCCEEecCCccEEe----eCCCCccccCCCCCcccccccCCcCC--ccccCCcceec-ccccc
Confidence            3332  23544  348887 99876  8889    999999999998532        222  25666666664 45566


Q ss_pred             CCCCCCCCCCCCCCCCC-CCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccc
Q psy8875         326 GDTVEKDSTCPNATPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCV  404 (734)
Q Consensus       326 g~~dC~d~~C~~~~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~  404 (734)
                      ...+|.+..|.+..+|. ...+|.|                         +||.||.+....=+++||..+ ..|...+-
T Consensus       165 ~~i~c~~~~c~ngg~C~dg~~~y~C-------------------------~Cp~Gf~G~~c~~~i~ec~~~-~~c~~~~c  218 (267)
T 4fbr_A          165 QNVINVDAKSNDGGKTLSGTMTYNG-------------------------EGPIGFRGTLTSPDTYTVENQ-WGGSTAPW  218 (267)
T ss_dssp             SCEEEEEEECSSTTSEEEEEEEETT-------------------------SCCEEEEEEEEETTEEEEEEE-CSCTTSCC
T ss_pred             cccccCCCCCCCCCEeeCCCCCeEE-------------------------eCCCCccccccccccceeccC-CCccCCcc
Confidence            55555555555544442 3344444                         666666554211256676543 33444333


Q ss_pred             cCCCcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeC
Q psy8875         405 DLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD  461 (734)
Q Consensus       405 ~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~  461 (734)
                      ...+.+.+.|.+|+..    ..|.-  .|..    ..+|++...+|.|.|++||.+.
T Consensus       219 ~~gG~~~~~C~~g~n~----~~c~~--~c~n----gGtC~dg~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          219 NPGGFWMIGARNGQNV----VALNV--ASSD----GGKTLAGTMIYNGEGPIGFRAR  265 (267)
T ss_dssp             EEEEEEECCCCTTCCE----EEEEE--ECSS----TTSEEEEEEEETTSCCEEEEEE
T ss_pred             cCCCeEEEecCCCCcc----ccCCc--CCCC----CCEeeCCCcceeecCCCCcccc
Confidence            3446677888888732    22210  1111    2478888889999999999874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.94  E-value=2.6e-07  Score=92.07  Aligned_cols=181  Identities=14%  Similarity=0.137  Sum_probs=124.1

Q ss_pred             ceeeeeecc----ceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC
Q psy8875         475 ASLLFARKH----DIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI  548 (734)
Q Consensus       475 ~~l~~~~~~----~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~  548 (734)
                      ..||.+.+.    .|+++++.......-+.  ......||+++  .++||.+++..+.++++++........+-. .   
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~-~---  104 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRY-P---  104 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEEC-S---
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC-C---
Confidence            356666654    69999998766654443  23344677776  799999999999999999875443333322 2   


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      +.|.++.+.+++||.+|. .++|.+.+...... +.+-..    .+..++.|.  +..|+||...|.. ..|.++++.-.
T Consensus       105 ~~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe--~~~G~lyanvw~s-~~I~vIDp~tG  180 (243)
T 3mbr_X          105 GEGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE--WVNGELLANVWLT-SRIARIDPASG  180 (243)
T ss_dssp             SCCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEE--EETTEEEEEETTT-TEEEEECTTTC
T ss_pred             CCceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeE--EeCCEEEEEECCC-CeEEEEECCCC
Confidence            345555566899999995 88999999865433 333221    123444444  4589999998864 69999998544


Q ss_pred             ceEEEEE-c------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         624 HRNMVIV-S------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       624 ~~~~lv~-~------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      ...-.+. .            ...-|||||+|+.+++||+|--.-.+++.+.+..
T Consensus       181 ~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          181 KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred             CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence            4333332 2            1246899999999999999998888999888653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=98.94  E-value=1.6e-07  Score=100.71  Aligned_cols=245  Identities=16%  Similarity=0.100  Sum_probs=140.5

Q ss_pred             eeeeeccceEEeecC-CCceEEEec--CCcceEEEeeeccCCeEE--EEE------e------CCCcEEEEecCC-CCce
Q psy8875         477 LLFARKHDIRKISLD-HHEMTAIVN--STKSATAIDFVFRTGMIF--WSD------I------SEKKIYKAPIDE-GSER  538 (734)
Q Consensus       477 l~~~~~~~I~~i~l~-~~~~~~l~~--~~~~~~~i~~d~~~~~ly--w~d------~------~~~~I~~~~l~~-g~~~  538 (734)
                      |+.++...|..++++ ......+..  ....+..+++++..+.||  .++      .      ..+.|....++. |...
T Consensus        54 l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~  133 (365)
T 1jof_A           54 IYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLE  133 (365)
T ss_dssp             EEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEE
T ss_pred             EEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCc
Confidence            444444455555553 223322211  112355678887666444  332      1      355566666542 3332


Q ss_pred             EEEEe---CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC--CCceEE-EEc-C-CCCCceeEEEeCCCCeEEEEecC
Q psy8875         539 TVVIE---EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE--GTMRKV-LVR-S-YLDEPRSLALNPIDGWMYWSDWG  610 (734)
Q Consensus       539 ~~~~~---~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld--G~~~~~-l~~-~-~l~~P~~iavD~~~g~LYwtd~~  610 (734)
                      ..+..   .....|.++++++.++.||+++.+.++|.+.+++  |+...+ .+. . ....|++++++|...+||++...
T Consensus       134 ~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~  213 (365)
T 1jof_A          134 KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA  213 (365)
T ss_dssp             EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT
T ss_pred             ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECC
Confidence            22211   1345789999999888899999888899999986  443221 121 1 25679999999988899998853


Q ss_pred             CCceEEEeccC---CCceE--EEEEc---CC---C-------CceeEE-EecCCCeEEEEeCCCC-----eEEEEecC--
Q psy8875         611 QNAKIERAGMD---GSHRN--MVIVS---DI---K-------WPNGLT-LDLVQRRLYWVDAKLN-----EISSCDYN--  664 (734)
Q Consensus       611 ~~~~I~~~~ld---G~~~~--~lv~~---~l---~-------~P~gla-vD~~~~~LYw~D~~~~-----~I~~~~~d--  664 (734)
                       .+.|....++   |....  ..+..   ..   .       .|.+|+ +++.+++||+++...+     .|..++++  
T Consensus       214 -~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~  292 (365)
T 1jof_A          214 -GNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             -TTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             -CCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence             3566665554   43221  11211   11   1       588999 9988889999986554     77777764  


Q ss_pred             CCceEE--EEcCCCCCCCCeEEEE-----ECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCcc
Q psy8875         665 GGNRRL--VLYSPQTLSHPFSIST-----FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLN  726 (734)
Q Consensus       665 G~~~~~--i~~~~~~~~~P~gl~v-----~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~  726 (734)
                      |.-.++  ++..  ....|.+|++     .+++||+++...+.|..++.... .++.+. .-.++.|..
T Consensus       293 g~~~~~~~~~~~--~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~-~l~~~~-~~~~~~p~~  357 (365)
T 1jof_A          293 GSIEKQLFLSPT--PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE-FLHRVA-RVRIPEPGF  357 (365)
T ss_dssp             SCEEEEEEEEEC--SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT-EEEEEE-EEECCSTTE
T ss_pred             CCEEEeeeeeec--CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh-hCceee-EEEcCCCcc
Confidence            332221  1211  1234555555     36899999887776665544333 344433 222455543

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.94  E-value=4.7e-10  Score=80.11  Aligned_cols=36  Identities=56%  Similarity=1.273  Sum_probs=34.3

Q ss_pred             CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus         4 ~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~   39 (45)
T 1d2l_A            4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAP   39 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTST
T ss_pred             CcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCC
Confidence            478889999999999999999999999999999988

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.93  E-value=5.6e-10  Score=77.37  Aligned_cols=38  Identities=37%  Similarity=1.109  Sum_probs=34.2

Q ss_pred             ccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        94 C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      |++.+|+|.+++++|||..|+|||..||.||+||.+|.
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            66789999974479999999999999999999999984

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.92  E-value=4.4e-07  Score=91.24  Aligned_cols=188  Identities=15%  Similarity=0.098  Sum_probs=129.3

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KV  583 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~  583 (734)
                      ..||.|+  .+.||.+....++|.++++..|.....++. ......||+++  +++||.+.+..++|.+.+...... ..
T Consensus        57 tqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEEC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            3788888  689999998888899999987766444443 22233567765  789999999999999999865443 33


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEE-EEc---CCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMV-IVS---DIKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~l-v~~---~l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      +-..  ..+.||+-|  .++||.++ + ..+|...+...... ..+ +..   .+..+|.|..  .+++||.+.+..+.|
T Consensus       132 i~~~--~eGwGLt~D--g~~L~vSd-G-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~dG~lyanvw~s~~I  203 (268)
T 3nok_A          132 TRYS--GEGWGLCYW--NGKLVRSD-G-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--ANGVIYANIWHSSDV  203 (268)
T ss_dssp             EECS--SCCCCEEEE--TTEEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTCSEE
T ss_pred             EeCC--CceeEEecC--CCEEEEEC-C-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--eCCEEEEEECCCCeE
Confidence            3322  234566655  68999999 5 57999988765332 222 111   2345677765  488999999999999


Q ss_pred             EEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875         659 SSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~  705 (734)
                      .++|.........+...           .....|.|||+.  +++||+|.-.=.+++.+.
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            99998655544333311           122468999995  689999874445666663

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=100.57  Aligned_cols=99  Identities=23%  Similarity=0.518  Sum_probs=72.2

Q ss_pred             ccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCc-cccccccCCCCCcCccc-------cCCCcceeecCC
Q psy8875         345 VRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCLHKCV-------DLPVGYMCECNE  416 (734)
Q Consensus       345 ~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C-~~~eC~~~~~~C~~~C~-------~~~~~~~C~C~~  416 (734)
                      +.|.|   .|++||.+..|....       .+...    ...| ++++|...+..-...|+       +++++|+|.|++
T Consensus        21 g~~~C---~C~~G~~G~~C~~~~-------~~~~~----~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~   86 (143)
T 4d90_A           21 GSFSC---ECPDGFTDPNCSSVV-------EVASD----EEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPR   86 (143)
T ss_dssp             -CCEE---ECCTTCCTTTTCSCC-------CCTTT----TTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCT
T ss_pred             CCEEe---ECCCCCCCCCCccCc-------ccccc----ccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcC
Confidence            46788   788898877765432       22111    1123 56778654433345888       778899999999


Q ss_pred             CcEecCCCCccc-cccCcCCCCCcc--cceeccCCceEEecCCCeeeCC
Q psy8875         417 GYKLSSNRHTCI-DIDECETPGSCS--QICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       417 G~~l~~~~~~C~-~~~eC~~~~~C~--~~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      ||    .+..|+ +++||. ..+|.  ++|+++.++|+|.|++||.+..
T Consensus        87 G~----~G~~C~~~i~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~G~~  130 (143)
T 4d90_A           87 GF----NGIHCQHNINECE-VEPCKNGGICTDLVANYSCECPGEFMGRN  130 (143)
T ss_dssp             TE----ESTTSCEECCTTT-TCCSCTTCEEEEETTEEEEECCTTCBSTT
T ss_pred             CC----cCCCcccCCCcCC-CCCCCCCCEeECCCCCeEeECCCCCccCC
Confidence            99    588997 999997 34564  5899999999999999999864

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.91  E-value=5.8e-10  Score=76.38  Aligned_cols=35  Identities=54%  Similarity=1.264  Sum_probs=19.4

Q ss_pred             CCCCceecCCCCeecCCcccCCCCCCCCCCCCCCC
Q psy8875         265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC  299 (734)
Q Consensus       265 C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C  299 (734)
                      |.+.+|+|.+|.||+.+|+|||..||.|||||.+|
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence            44455555555555555555555555555555554

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.90  E-value=3.8e-10  Score=81.97  Aligned_cols=39  Identities=49%  Similarity=1.152  Sum_probs=35.6

Q ss_pred             CCCCCCCCceecC-----CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          51 SKPCRNSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        51 ~~~C~~~~~f~C~-----~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +..|+ +.+|+|.     +++|||..|+|||+.||.|||||.+|.
T Consensus         2 ~~~C~-~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            2 SSRCP-PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCC-CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCC-CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence            34688 8999998     789999999999999999999999885

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=98.89  E-value=6.3e-07  Score=101.65  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=148.1

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE-EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT-VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~-~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      .+.+|++.+..+.+|++....++|..+++..+.... ..+. ....|.++++++.++.||.+....++|.+.++......
T Consensus       281 ~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~  359 (543)
T 1nir_A          281 RVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS  359 (543)
T ss_dssp             CEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEE
Confidence            567888888788899888888999999987544322 1223 34579999999988889999988899999998654433


Q ss_pred             EEEc-CCCCCc-eeEE-EeCCCCeEEEEecCCCceEEEeccCC-------CceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         583 VLVR-SYLDEP-RSLA-LNPIDGWMYWSDWGQNAKIERAGMDG-------SHRNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       583 ~l~~-~~l~~P-~~ia-vD~~~g~LYwtd~~~~~~I~~~~ldG-------~~~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      ..+. ....+| +++. ++|..|.+|.+.......|...+++.       ......+...-..+..|++.+.+.+||+..
T Consensus       360 ~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          360 ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             EeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            3332 223344 3554 47777899988753346788887764       122222223334567799987777777654


Q ss_pred             CC------CCeEEEEecCCCceE-EEEc-C-----CCCCCCCeEEEE--ECCEEEEEeCC----CCceEEEeccCCCceE
Q psy8875         653 AK------LNEISSCDYNGGNRR-LVLY-S-----PQTLSHPFSIST--FEDWLYWSDWQ----QKAIYKANKFTGDNLT  713 (734)
Q Consensus       653 ~~------~~~I~~~~~dG~~~~-~i~~-~-----~~~~~~P~gl~v--~~~~lywtd~~----~~~v~~~~~~~G~~~~  713 (734)
                      ..      .+.|..++++...+. .++. .     ......+..+++  .+.+||++.|.    .+.|..++..+++.++
T Consensus       440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence            21      458999997744332 3321 0     122345667777  57899999883    5889999999999888


Q ss_pred             EEecccccCCCcc
Q psy8875         714 AITGVHQTHEPLN  726 (734)
Q Consensus       714 ~l~~~~~l~~P~~  726 (734)
                      +|... .+..|.+
T Consensus       520 ~i~~~-~~~~p~g  531 (543)
T 1nir_A          520 VVKDP-RLITPTG  531 (543)
T ss_dssp             EECCT-TCCSEEE
T ss_pred             eecCC-CccCCCe
Confidence            88754 3556654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=8.8e-07  Score=89.03  Aligned_cols=189  Identities=13%  Similarity=0.083  Sum_probs=126.3

Q ss_pred             eEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-e
Q psy8875         505 ATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-R  581 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-~  581 (734)
                      ..||.|+  .+.||.+....  ..|.++++..|.....+.-..-....||+++  +++||.+.+..++|.+.++.... .
T Consensus        45 tqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence            3788888  67999987654  4899999986654333321111123556665  78999999999999999986543 3


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEE----cCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIV----SDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~----~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      ..+-..  ..+.||+-  ..++||.++ + ..+|+..+..... ...+..    ..+..+|.|..  .+++||...+..+
T Consensus       121 ~ti~~~--~eG~glt~--dg~~L~~Sd-G-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~--~~G~lyan~w~~~  192 (262)
T 3nol_A          121 RSFNYD--GEGWGLTH--NDQYLIMSD-G-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW--VDGEIFANVWQTN  192 (262)
T ss_dssp             EEEECS--SCCCCEEE--CSSCEEECC-S-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTSS
T ss_pred             EEEECC--CCceEEec--CCCEEEEEC-C-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE--ECCEEEEEEccCC
Confidence            344322  24456655  468899999 4 4789998876433 222221    12355666766  4889999999999


Q ss_pred             eEEEEecCCCceEEEEcCCC----------CCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875         657 EISSCDYNGGNRRLVLYSPQ----------TLSHPFSISTF--EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       657 ~I~~~~~dG~~~~~i~~~~~----------~~~~P~gl~v~--~~~lywtd~~~~~v~~~~  705 (734)
                      .|.++|.........+....          ....|.|||+.  +++||+|.-.=..++.+.
T Consensus       193 ~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~  253 (262)
T 3nol_A          193 KIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT  253 (262)
T ss_dssp             EEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence            99999986655444443211          12367899995  689999974445677663

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.88  E-value=1.2e-09  Score=77.11  Aligned_cols=39  Identities=54%  Similarity=1.211  Sum_probs=35.1

Q ss_pred             CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      ..|.+.+|+|.+. |+|||..|+|||..||.|||||.+|.
T Consensus         2 ~~C~~~~F~C~~~-g~CI~~~~~CDg~~DC~DgSDE~~C~   40 (42)
T 1cr8_A            2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTT-CCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCCceEeCCC-CeEcChhhcCCCCcCCCCCCcccCCC
Confidence            3688899999864 79999999999999999999999984

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.88  E-value=1.1e-06  Score=87.63  Aligned_cols=190  Identities=15%  Similarity=0.088  Sum_probs=125.6

Q ss_pred             ceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc-
Q psy8875         504 SATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM-  580 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~-  580 (734)
                      ...||.|+  .++||.+....  ..|.++++..|.....+.-.......||+++  +++||.+.+..++|.+.+++... 
T Consensus        22 ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           22 FTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            45689998  48999987653  5899999986654333321122223455654  79999999999999999986544 


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--c---CCCCceeEEEecCCCeEEEEeCCC
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--S---DIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~---~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ...+-..  ..+-||+  +..++||.+| + ..+|...+........-+.  .   .+..+|.|..  .+++||...+..
T Consensus        98 ~~ti~~~--~~Gwglt--~dg~~L~vSd-g-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanvw~s  169 (243)
T 3mbr_X           98 RARFRYP--GEGWALT--SDDSHLYMSD-G-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--VNGELLANVWLT  169 (243)
T ss_dssp             EEEEECS--SCCCEEE--ECSSCEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTT
T ss_pred             EEEEeCC--CCceEEe--eCCCEEEEEC-C-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE--eCCEEEEEECCC
Confidence            3333322  2344555  5578999999 5 5789998876533222221  1   2345566664  589999999999


Q ss_pred             CeEEEEecCCCceEEEEcCC-----------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875         656 NEISSCDYNGGNRRLVLYSP-----------QTLSHPFSISTF--EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~-----------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~  705 (734)
                      +.|.++|+........+...           .....|.|||+.  +++||+|.-.=..++.+.
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~  232 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR  232 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence            99999998655544433311           122467899995  689999875445677664

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=98.87  E-value=1.9e-10  Score=108.66  Aligned_cols=43  Identities=30%  Similarity=0.716  Sum_probs=37.7

Q ss_pred             Cc-cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccc
Q psy8875         386 KC-GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       386 ~C-~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .| +||||...+..|.+ .|+|++++|+|.|++||.+..++++|+
T Consensus       118 ~c~dideC~~~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          118 ILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             CEEECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             ccCccccccCCCCCcCCCEeEcCCCCEEeeCCCCccCCCCCCccC
Confidence            45 89999876677874 899999999999999999999999884

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.87  E-value=1.6e-09  Score=95.67  Aligned_cols=80  Identities=28%  Similarity=0.650  Sum_probs=60.7

Q ss_pred             cccccccCC------CCC--cCccccCCCcceeecCCCcEecCCCCccccc---cCcCC-CCCcccceeccCCceEEecC
Q psy8875         388 GVDECAKDN------GGC--LHKCVDLPVGYMCECNEGYKLSSNRHTCIDI---DECET-PGSCSQICLNEKGGFKCECV  455 (734)
Q Consensus       388 ~~~eC~~~~------~~C--~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~---~eC~~-~~~C~~~C~n~~g~~~C~C~  455 (734)
                      |++||+.++      ..|  ...|++++++|+|.|++||.    +..|+++   +||.. ++.|+++|+|+.++|+|.|+
T Consensus         5 d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~----G~~C~~~~~~~~C~~~~~~C~~~C~n~~g~y~C~C~   80 (114)
T 1aut_L            5 DGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWE----GRFCQREVSFLNCSLDNGGCTHYCLEEVGWRRCSCA   80 (114)
T ss_dssp             ---CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEE----STTSCEECCSSSSSSGGGGCSSEEEECSSSEEEECC
T ss_pred             ecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCc----CCCcCcCCcCCcCcCCCCCCCCEeECCCCCEEeECC
Confidence            455666554      123  24799999999999999994    5668875   46874 57899999999999999999


Q ss_pred             CCeeeCCCCCccccccc
Q psy8875         456 AGYIKDPHHPTQCKAAE  472 (734)
Q Consensus       456 ~gy~~~~~~~t~C~~~~  472 (734)
                      +||.+..++++ |.+..
T Consensus        81 ~G~~~~~~g~~-C~~~~   96 (114)
T 1aut_L           81 PGYKLGDDLLQ-CHPAV   96 (114)
T ss_dssp             TTEEECTTSSC-EEECS
T ss_pred             CCeeECCCCCc-cCcCc
Confidence            99999887665 77643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=98.86  E-value=9.8e-07  Score=96.19  Aligned_cols=216  Identities=13%  Similarity=0.091  Sum_probs=151.6

Q ss_pred             ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+..++....... +......+.+++|++..+.||++....+.|+..++..+... ..+. ....|.++++++.++.
T Consensus       190 d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~~~~~~~~~g~~  267 (433)
T 3bws_A          190 ANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-RKTD-KIGLPRGLLLSKDGKE  267 (433)
T ss_dssp             GTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EECC-CCSEEEEEEECTTSSE
T ss_pred             CCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-EEec-CCCCceEEEEcCCCCE
Confidence            3567777776654433 33345678999999988899999888889999998754322 2222 3456889999988888


Q ss_pred             EEEEeC-------CCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875         561 IYWTDA-------HKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI  633 (734)
Q Consensus       561 lY~td~-------~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l  633 (734)
                      ||.+..       ..+.|.+.++........+ .....|.+++++|...+||++... .+.|...+++.......+. ..
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~~~~~~~~~-~~  344 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMC-CSKIEVYDLKEKKVQKSIP-VF  344 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETT-TTEEEEEETTTTEEEEEEE-CS
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecC-CCEEEEEECCCCcEEEEec-CC
Confidence            888875       3468889998755433333 122378999999988899999754 4788888887544433333 44


Q ss_pred             CCceeEEEecCCCeEEEEeCCC--------------CeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKL--------------NEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ  697 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~--------------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~  697 (734)
                      ..|.+|++++.+.+||.+....              +.|+.+++........+..   ...|.+|++  .+.+||.+...
T Consensus       345 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~  421 (433)
T 3bws_A          345 DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA---GNQPTGLDVSPDNRYLVISDFL  421 (433)
T ss_dssp             SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSCEEEEEETT
T ss_pred             CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC---CCCCceEEEcCCCCEEEEEECC
Confidence            6689999998888999998654              4899999865554444432   346788888  45678888776


Q ss_pred             CCceEEEe
Q psy8875         698 QKAIYKAN  705 (734)
Q Consensus       698 ~~~v~~~~  705 (734)
                      .+.|...+
T Consensus       422 d~~i~v~~  429 (433)
T 3bws_A          422 DHQIRVYR  429 (433)
T ss_dssp             TTEEEEEE
T ss_pred             CCeEEEEE
Confidence            66666554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.85  E-value=6.4e-08  Score=106.96  Aligned_cols=159  Identities=14%  Similarity=0.198  Sum_probs=112.4

Q ss_pred             CCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEE-cCC------CCCceeEEEeCC---CCe
Q psy8875         535 GSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLV-RSY------LDEPRSLALNPI---DGW  603 (734)
Q Consensus       535 g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~-~~~------l~~P~~iavD~~---~g~  603 (734)
                      +...+++. .++..|.+||+++. ++||+++...++|.+++.+ |....++. ...      ...+.|||++|.   +++
T Consensus        16 gf~~~~~a-~~l~~P~~~a~~pd-G~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~   93 (454)
T 1cru_A           16 NFDKKVIL-SNLNKPHALLWGPD-NQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY   93 (454)
T ss_dssp             TSCEEEEE-CCCSSEEEEEECTT-SCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred             CeEEEEEE-CCCCCceEEEEcCC-CcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence            33344444 57999999999964 6899999877789999874 54433322 222      234569999987   899


Q ss_pred             EEEEecC-------C----CceEEEeccCCC-----ceEEEEE----cCCCCceeEEEecCCCeEEEEeCC---------
Q psy8875         604 MYWSDWG-------Q----NAKIERAGMDGS-----HRNMVIV----SDIKWPNGLTLDLVQRRLYWVDAK---------  654 (734)
Q Consensus       604 LYwtd~~-------~----~~~I~~~~ldG~-----~~~~lv~----~~l~~P~glavD~~~~~LYw~D~~---------  654 (734)
                      ||++...       .    ..+|.|..+++.     ..++|+.    ...+.+.+|++++ .++||++...         
T Consensus        94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~  172 (454)
T 1cru_A           94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYL  172 (454)
T ss_dssp             EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGT
T ss_pred             EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCcccc
Confidence            9999852       0    258999887642     2344443    2357799999995 6689999431         


Q ss_pred             -----------------------CCeEEEEecCCC-----------ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCC
Q psy8875         655 -----------------------LNEISSCDYNGG-----------NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQK  699 (734)
Q Consensus       655 -----------------------~~~I~~~~~dG~-----------~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~  699 (734)
                                             .++|.|++.+|+           ..+++..   .+.+|.+|++. .+.||+++.+..
T Consensus       173 ~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~---G~RNp~gla~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          173 FLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTL---GHRNPQGLAFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             TSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEB---CCSEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEE---CCCCcceEEECCCCCEEEEecCCC
Confidence                                   468999999998           3344433   36789999996 589999997654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=4.6e-07  Score=91.06  Aligned_cols=179  Identities=11%  Similarity=0.095  Sum_probs=120.9

Q ss_pred             ceeeeeecc--ceEEeecCCCceE-EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         475 ASLLFARKH--DIRKISLDHHEMT-AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       475 ~~l~~~~~~--~I~~i~l~~~~~~-~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      ..||++...  .|+++++...... .+++......||+++  .++||.+++..+.++++++........+ ..   .+.|
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti-~~---~~eG  138 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTT-RY---SGEG  138 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEE-EC---SSCC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEE-eC---CCce
Confidence            356666654  4888888765543 333333344667776  7899999999999999998754433333 21   2344


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCc-eEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTM-RKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      .++.+.+++||.++ +.++|.+.+..... ...+...    .+..++.|..  ..|+||...|.. ..|.+++..-....
T Consensus       139 wGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~--~dG~lyanvw~s-~~I~vIDp~TG~V~  214 (268)
T 3nok_A          139 WGLCYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELEC--ANGVIYANIWHS-SDVLEIDPATGTVV  214 (268)
T ss_dssp             CCEEEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETTC-SEEEEECTTTCBEE
T ss_pred             eEEecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEE--eCCEEEEEECCC-CeEEEEeCCCCcEE
Confidence            44445588999999 58999999986543 3333221    1334455554  488999999864 79999998544433


Q ss_pred             EEEE-c------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEec
Q psy8875         627 MVIV-S------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       627 ~lv~-~------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      -.+. .            ...-|||||+|+.+++||+|--.-.+++.+.+
T Consensus       215 ~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          215 GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            3332 2            12468999999999999999987788988876

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.84  E-value=4.6e-10  Score=82.08  Aligned_cols=37  Identities=38%  Similarity=1.003  Sum_probs=34.7

Q ss_pred             CCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       132 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..+|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus         4 p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             CCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc
Confidence            3578999999999999999999999999999999987

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.83  E-value=1.1e-09  Score=86.45  Aligned_cols=47  Identities=32%  Similarity=0.662  Sum_probs=44.3

Q ss_pred             cccccccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccCcC
Q psy8875         388 GVDECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      |+|||...+++|+|.|+|+++ +|+|.|++||.|..|+++|.+++||.
T Consensus         4 d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~   51 (69)
T 1kli_L            4 DQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   51 (69)
T ss_dssp             CCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             ccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCccccc
Confidence            688999888999999999999 89999999999999999999999985

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.82  E-value=2.3e-06  Score=97.14  Aligned_cols=229  Identities=10%  Similarity=-0.009  Sum_probs=153.7

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEeCCCCCccc
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIEEDKTIADG  551 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~~~~~~p~g  551 (734)
                      .+++++  .+.|..+++........+.....|.++++++..++||+++ ..+.|..+++.  .+.... .+.. ...|++
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~-~dg~V~viD~~~~t~~~v~-~i~~-G~~P~~  244 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVA-EIKI-GSEARS  244 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEE-EEEC-CSEEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEc-CCCeEEEEECCCCCCcEeE-EEec-CCCCce
Confidence            445544  4678888888766655555556788999999889999886 46789999984  332222 2332 346999


Q ss_pred             eeee----ccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CC----------CCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875         552 LAVD----WIYSHIYWTDAHKNTIELANFEGTMRKVLVR-SY----------LDEPRSLALNPIDGWMYWSDWGQNAKIE  616 (734)
Q Consensus       552 lAvD----~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~----------l~~P~~iavD~~~g~LYwtd~~~~~~I~  616 (734)
                      |+++    +.++.||+++...+.|.+++.........+. ..          ...+.+|++.+.+..++++. ...++|+
T Consensus       245 ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v~  323 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKIL  323 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEEE
T ss_pred             eEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeEE
Confidence            9999    5888999999999999999865543332222 11          11445777766555555554 4568899


Q ss_pred             EeccCCCceEEE-EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-E--CCEE
Q psy8875         617 RAGMDGSHRNMV-IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-F--EDWL  691 (734)
Q Consensus       617 ~~~ldG~~~~~l-v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-~--~~~l  691 (734)
                      .++........+ ....-.+|+++.+|+.+.+||++....++|..+++........+......+|| .|+.+ .  .+.+
T Consensus       324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v  403 (567)
T 1qks_A          324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPV  403 (567)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEE
T ss_pred             EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcE
Confidence            888755432211 11234578899999999999999988999999998765544444321245666 46655 3  3667


Q ss_pred             EEEe-CCCCceEEEeccC
Q psy8875         692 YWSD-WQQKAIYKANKFT  708 (734)
Q Consensus       692 ywtd-~~~~~v~~~~~~~  708 (734)
                      |++. .+.+.|..++..+
T Consensus       404 ~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          404 WATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEBSSSSEEEEEECCT
T ss_pred             EEeCCCCCCeEEEecCCC
Confidence            7664 4567888887666

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.82  E-value=2e-09  Score=99.89  Aligned_cols=57  Identities=40%  Similarity=0.937  Sum_probs=47.7

Q ss_pred             ceeecCCCcEecCCCCccccccCcCC-CCCccc-ceeccCCceEEecCCCeeeCCCCCccc
Q psy8875         410 YMCECNEGYKLSSNRHTCIDIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC  468 (734)
Q Consensus       410 ~~C~C~~G~~l~~~~~~C~~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~~~~t~C  468 (734)
                      |.|.|++||.+. +++.|++||||+. ++.|.+ +|+|+.++|+|.|++||.++.++++ |
T Consensus        88 ~~C~C~~Gy~~~-~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~-C  146 (147)
T 2w86_A           88 VDPICGKGYSRI-KGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRI-C  146 (147)
T ss_dssp             CCTTTCTTEEEE-ETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSC-B
T ss_pred             CcccCCCccccC-CCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCe-e
Confidence            677788888763 6889999999974 567875 8999999999999999999887665 5

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.82  E-value=1.7e-09  Score=77.11  Aligned_cols=36  Identities=50%  Similarity=1.213  Sum_probs=32.9

Q ss_pred             CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|...+|+|.+|+||+..|+|||..||.|||||.+
T Consensus         6 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             --CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC
Confidence            468889999999999999999999999999999987

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.81  E-value=3.4e-07  Score=94.29  Aligned_cols=194  Identities=12%  Similarity=-0.020  Sum_probs=131.8

Q ss_pred             CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCcee
Q psy8875         515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS  594 (734)
Q Consensus       515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~  594 (734)
                      +.+++++...+.|+.++...|.....+-......+..+++.+ .++||++.  .+.|...+.+|+....+-......+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs~--~~~V~~~d~~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFSY--SKGAKMITRDGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEEC--BSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEeC--CCCEEEECCCCCEEEEEcCCCCccccc
Confidence            455556556666666665434332222111113578888885 56677743  578999999887665554322234556


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-C----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceE
Q psy8875         595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-D----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRR  669 (734)
Q Consensus       595 iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~  669 (734)
                      +++.+ .|.+++++.+...+|+..+.+|+....+... .    ...|.+++++ .++.+++++...++|..++.+|+...
T Consensus        82 ~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~-~~G~~lv~~~~~~~v~~~d~~G~~~w  159 (276)
T 3no2_A           82 ARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN-KKGNYLVPLFATSEVREIAPNGQLLN  159 (276)
T ss_dssp             EEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC-TTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC-CCCCEEEEecCCCEEEEECCCCCEEE
Confidence            67765 6778888765357888888898865544321 1    2357788887 46677889998999999999977666


Q ss_pred             EEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         670 LVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       670 ~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .+-.    ...|+++.+ .++.+++++...++|+.+++.+|+.+..+..
T Consensus       160 ~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~  204 (276)
T 3no2_A          160 SVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA  204 (276)
T ss_dssp             EEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred             EEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence            5543    246888777 4688999999888999999999999888864

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.81  E-value=2.2e-09  Score=76.10  Aligned_cols=36  Identities=39%  Similarity=0.982  Sum_probs=33.9

Q ss_pred             CCcccccCcCCC-CceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGN-NRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|...+|+|.+ |+||+..|+|||..||.|||||.+
T Consensus         5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            468889999999 999999999999999999999987

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.81  E-value=1.4e-09  Score=98.91  Aligned_cols=80  Identities=28%  Similarity=0.620  Sum_probs=34.6

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc-c-cCcCC-CCCcccceeccCCceEEecCCCeeeCCCC
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID-I-DECET-PGSCSQICLNEKGGFKCECVAGYIKDPHH  464 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~-~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~  464 (734)
                      ++|+|..++..-...|++++++|+|.|++||    .++.|.+ + ++|.. ++.|.++|+++.++|.|.|++||.+..++
T Consensus        41 d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~----~G~~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g  116 (134)
T 2vh0_B           41 DGDQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG  116 (134)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTS
T ss_pred             CcCcCCCCCCCCcCCcccCCCCEEeeCCCCc----cCCccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCC
Confidence            7888986542223489999999999999999    4788987 6 89975 46799999999999999999999988776


Q ss_pred             Cccccccc
Q psy8875         465 PTQCKAAE  472 (734)
Q Consensus       465 ~t~C~~~~  472 (734)
                      ++ |..+.
T Consensus       117 ~~-C~~~~  123 (134)
T 2vh0_B          117 KA-CIPTG  123 (134)
T ss_dssp             SC-EEESS
T ss_pred             Cc-cCcCC
Confidence            55 87643

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.80  E-value=1.5e-09  Score=104.51  Aligned_cols=80  Identities=29%  Similarity=0.686  Sum_probs=35.5

Q ss_pred             c-cccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcccc-c-cCcCC-CCCcccceeccCCceEEecCCCeee
Q psy8875         387 C-GVDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCID-I-DECET-PGSCSQICLNEKGGFKCECVAGYIK  460 (734)
Q Consensus       387 C-~~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~-~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~  460 (734)
                      | ++++|..+  .|.+  .|++++++|+|.|++||    .|+.|.+ + ++|.. ++.|.+.|+|+.|+|.|.|++||.+
T Consensus        39 c~dideC~~~--pC~ngg~C~n~~g~y~C~C~~Gf----~G~~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l  112 (195)
T 1nfu_B           39 YKDGDQCETS--PCQNQGKCKDGLGEYTCTCLEGF----EGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTL  112 (195)
T ss_dssp             ------------------------------------------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEE
T ss_pred             CCCCcccCCC--CCCCCCEeECCCCCeeEeCCCCc----eeccccccccccccCCCCCCCCEeECCCCCeEEECCCCcee
Confidence            5 78999865  4544  89999999999999999    4788987 6 89975 4789999999999999999999998


Q ss_pred             CCCCCcccccccc
Q psy8875         461 DPHHPTQCKAAEG  473 (734)
Q Consensus       461 ~~~~~t~C~~~~~  473 (734)
                      ..++++ |..+..
T Consensus       113 ~~dG~~-C~~~~~  124 (195)
T 1nfu_B          113 ADNGKA-CIPTGP  124 (195)
T ss_dssp             CTTSSC-EEESSS
T ss_pred             CCCCCc-cccCCC
Confidence            877665 876543

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.79  E-value=1.6e-09  Score=81.74  Aligned_cols=45  Identities=31%  Similarity=0.718  Sum_probs=41.9

Q ss_pred             cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      |||...++.|+|.|+|++++|+|.|++||.|..|+++|.+++||.
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~   46 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP   46 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence            678777788999999999999999999999999999999999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.78  E-value=1.8e-06  Score=88.80  Aligned_cols=226  Identities=12%  Similarity=0.031  Sum_probs=148.2

Q ss_pred             ccceEEeec-CCCceEEEecCC-cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         482 KHDIRKISL-DHHEMTAIVNST-KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       482 ~~~I~~i~l-~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      ...|+.++. +|...-.+.... ..+..+++.+ .+.||++  ..+.|+.++++ |.....+.......+.++++. ..+
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~~-G~~~W~~~~~~~~~~~~~~~~-~dG   88 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITRD-GRELWNIAAPAGCEMQTARIL-PDG   88 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECTT-SCEEEEEECCTTCEEEEEEEC-TTS
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECCC-CCEEEEEcCCCCccccccEEC-CCC
Confidence            455666666 443333332221 3567777776 4556663  46678888884 543222221111234455665 467


Q ss_pred             cEEEEeCC-CCeEEEEeCCCCceEEEEc-C----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCC
Q psy8875         560 HIYWTDAH-KNTIELANFEGTMRKVLVR-S----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI  633 (734)
Q Consensus       560 ~lY~td~~-~~~I~~~~ldG~~~~~l~~-~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l  633 (734)
                      ++++++.. .++|..++.+|+....+.. .    ....|+++++++ .|.+++++.. .++|...+.+|.....+-.  -
T Consensus        89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-~~~v~~~d~~G~~~w~~~~--~  164 (276)
T 3no2_A           89 NALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-TSEVREIAPNGQLLNSVKL--S  164 (276)
T ss_dssp             CEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEEC--S
T ss_pred             CEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-CCEEEEECCCCCEEEEEEC--C
Confidence            88888877 7899999999987655432 1    123677888887 5667777754 5799999999765544432  2


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCC---CCCCCCeEEEE-ECCEEEEEeCC----------C
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSP---QTLSHPFSIST-FEDWLYWSDWQ----------Q  698 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~---~~~~~P~gl~v-~~~~lywtd~~----------~  698 (734)
                      ..|.++++. .++.+++++...++|..++.+ |+..-.+....   ..+..|.++++ .++.||++++.          .
T Consensus       165 ~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~  243 (276)
T 3no2_A          165 GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH  243 (276)
T ss_dssp             SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC
T ss_pred             CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC
Confidence            568888886 577888998888899999998 77776665321   23566888888 68999999963          3


Q ss_pred             CceEEEeccCCCceEEEecc
Q psy8875         699 KAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       699 ~~v~~~~~~~G~~~~~l~~~  718 (734)
                      .+++.+++ +|+.+..+...
T Consensus       244 ~~~~~~~~-~g~~~W~~~~~  262 (276)
T 3no2_A          244 PQLVEIDS-EGKVVWQLNDK  262 (276)
T ss_dssp             CSEEEECT-TSBEEEEECCT
T ss_pred             ceEEEECC-CCCEEEEecCc
Confidence            46888876 77776666544

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.77  E-value=1.6e-09  Score=78.79  Aligned_cols=40  Identities=45%  Similarity=0.989  Sum_probs=27.4

Q ss_pred             CCCCCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         261 CHETCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       261 C~~~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                      |...|.+.+|+|.+| +||+..|+|||..||.|||||.+|.
T Consensus         3 C~~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             SCCCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            334566667777777 6777777777777777777777665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.76  E-value=2.9e-06  Score=96.40  Aligned_cols=251  Identities=9%  Similarity=0.027  Sum_probs=155.8

Q ss_pred             eeeeeec-cceEEeecC--CCceEEEecCCcceEEEeee----ccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----
Q psy8875         476 SLLFARK-HDIRKISLD--HHEMTAIVNSTKSATAIDFV----FRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----  544 (734)
Q Consensus       476 ~l~~~~~-~~I~~i~l~--~~~~~~l~~~~~~~~~i~~d----~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----  544 (734)
                      ++|+++. ..|..+++.  ......-+.....|.+|+++    +..++||+++...+.|..++.........+...    
T Consensus       210 ~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~  289 (567)
T 1qks_A          210 YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY  289 (567)
T ss_dssp             EEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT
T ss_pred             EEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc
Confidence            4455443 468888884  33333333445678999999    578899999887777666554322111111000    


Q ss_pred             --------------------------------------------------CCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         545 --------------------------------------------------DKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       545 --------------------------------------------------~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                                                                        ....|.++++++.++.+|+++...++|.++
T Consensus       290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi  369 (567)
T 1qks_A          290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI  369 (567)
T ss_dssp             TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence                                                              012345678888888899999888999999


Q ss_pred             eCCCCceEEEE-c-CCCCCc-eeEE-EeCCCCeEEEEecCCCceEEEeccCCCc-----eEEE--EEcCCCCceeEEEec
Q psy8875         575 NFEGTMRKVLV-R-SYLDEP-RSLA-LNPIDGWMYWSDWGQNAKIERAGMDGSH-----RNMV--IVSDIKWPNGLTLDL  643 (734)
Q Consensus       575 ~ldG~~~~~l~-~-~~l~~P-~~ia-vD~~~g~LYwtd~~~~~~I~~~~ldG~~-----~~~l--v~~~l~~P~glavD~  643 (734)
                      ++........+ . ....+| +|+. ++|..+.+|.+.......|..++.+...     .+++  +...-..+..|.+.+
T Consensus       370 D~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p  449 (567)
T 1qks_A          370 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP  449 (567)
T ss_dssp             ETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred             ECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC
Confidence            98755443333 2 233455 5665 5887788887764334689888887521     1222  222223345577777


Q ss_pred             CCCeEEEEeCC------CCeEEEEecCCC-----ce--EEEEc-----CCCCCCCCeEEEE--ECCEEEEEeCC----CC
Q psy8875         644 VQRRLYWVDAK------LNEISSCDYNGG-----NR--RLVLY-----SPQTLSHPFSIST--FEDWLYWSDWQ----QK  699 (734)
Q Consensus       644 ~~~~LYw~D~~------~~~I~~~~~dG~-----~~--~~i~~-----~~~~~~~P~gl~v--~~~~lywtd~~----~~  699 (734)
                      .+.+||+....      .+.|..++++..     ..  +++..     -+....+|..+.+  .+.+||++.|.    .+
T Consensus       450 ~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~  529 (567)
T 1qks_A          450 NSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQES  529 (567)
T ss_dssp             TCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCC
T ss_pred             CCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCC
Confidence            77788776542      348999886533     32  33311     0112346777777  57899999983    68


Q ss_pred             ceEEEeccCCCceEEEecccccCCCccC
Q psy8875         700 AIYKANKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       700 ~v~~~~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      .|..++..+++..++|... .+..|.++
T Consensus       530 ~i~v~D~~t~~~~~~i~~~-~~~~P~g~  556 (567)
T 1qks_A          530 ALVVVDDKTLELKHVIKDE-RLVTPTGK  556 (567)
T ss_dssp             EEEEEETTTTEEEEEECCT-TCCSEEEE
T ss_pred             cEEEEECCCceEEEEeCCC-cccCCCee
Confidence            8999999999888888754 35566543

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.75  E-value=3.2e-09  Score=77.02  Aligned_cols=36  Identities=42%  Similarity=1.044  Sum_probs=33.1

Q ss_pred             CCcccccCcCC-----CCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~-----~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|.+.+|+|.     +|+|||.+|+|||..||.|||||.+
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            46888999998     7999999999999999999999987

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.73  E-value=4.5e-09  Score=80.26  Aligned_cols=53  Identities=26%  Similarity=0.696  Sum_probs=46.0

Q ss_pred             cccCCCCCcCccccCC-CcceeecCCCcEecCCCCccccccCcCCCCCcccceeccCC
Q psy8875         392 CAKDNGGCLHKCVDLP-VGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKG  448 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~-~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g  448 (734)
                      |...+++|+|.|+|++ ++|+|.|++||.|..|+++|.++++    .+|.++|+|...
T Consensus         2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~----~pC~~~c~n~~~   55 (59)
T 2wph_E            2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP----FPCGRVSVSQTS   55 (59)
T ss_dssp             TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEESSS----SCTTCCCSCCCS
T ss_pred             CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC----CCCCCccccccc
Confidence            5556789999999999 6999999999999999999999764    579999998653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.73  E-value=2.9e-06  Score=90.27  Aligned_cols=195  Identities=13%  Similarity=0.088  Sum_probs=136.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCC---------------CcEEEEecCCC--Cc-eEEEEeCCC----CCccceeeecc-
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISE---------------KKIYKAPIDEG--SE-RTVVIEEDK----TIADGLAVDWI-  557 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~---------------~~I~~~~l~~g--~~-~~~~~~~~~----~~p~glAvD~~-  557 (734)
                      .+.++.++.+|. .++||+.|.+.               .+|..++|..+  .. +++.+...+    .....|+||.. 
T Consensus        85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~  163 (381)
T 3q6k_A           85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN  163 (381)
T ss_dssp             SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred             ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence            466788898885 78899998652               25788888855  33 222332222    23457999932 


Q ss_pred             ------CCcEEEEeCCCCeEEEEeCC-CCceEEEEc---CC--------------CCCceeEEEeCC----CCeEEEEec
Q psy8875         558 ------YSHIYWTDAHKNTIELANFE-GTMRKVLVR---SY--------------LDEPRSLALNPI----DGWMYWSDW  609 (734)
Q Consensus       558 ------~~~lY~td~~~~~I~~~~ld-G~~~~~l~~---~~--------------l~~P~~iavD~~----~g~LYwtd~  609 (734)
                            .+.+|+||.....|.|+++. |+..+++-.   ..              .....||||.|.    .+.|||.-.
T Consensus       164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl  243 (381)
T 3q6k_A          164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG  243 (381)
T ss_dssp             TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred             CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence                  57899999999999999985 455554411   00              136679999998    789999986


Q ss_pred             CCCceEEEecc----CCC---ceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCCeEEEEecCC-----CceEEEEcCCC
Q psy8875         610 GQNAKIERAGM----DGS---HRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG-----GNRRLVLYSPQ  676 (734)
Q Consensus       610 ~~~~~I~~~~l----dG~---~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG-----~~~~~i~~~~~  676 (734)
                      . ..+++++..    +.+   ..+.+.... .....++++|..++.||+++...+.|.+.+.++     .+..+|+..+ 
T Consensus       244 s-s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~-  321 (381)
T 3q6k_A          244 S-AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSS-  321 (381)
T ss_dssp             S-CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECT-
T ss_pred             C-CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECC-
Confidence            4 357777752    222   223333332 234457888878999999999999999999887     4667788776 


Q ss_pred             CCCCCeEEEE-ECCEEEEEeCCC
Q psy8875         677 TLSHPFSIST-FEDWLYWSDWQQ  698 (734)
Q Consensus       677 ~~~~P~gl~v-~~~~lywtd~~~  698 (734)
                      .+.+|.+|++ .+++||++..+-
T Consensus       322 ~l~~pd~~~i~~~g~Lwv~sn~l  344 (381)
T 3q6k_A          322 RFVFGTDISVDSKGGLWFMSNGF  344 (381)
T ss_dssp             TCCSEEEEEECTTSCEEEEECSC
T ss_pred             CccccCeEEECCCCeEEEEECcc
Confidence            8999999999 578999987553

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.73  E-value=1.7e-09  Score=77.08  Aligned_cols=36  Identities=50%  Similarity=1.303  Sum_probs=33.9

Q ss_pred             CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|...+|+|.+|+|||..|+|||..||.|||||..
T Consensus         3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCC
Confidence            468889999999999999999999999999999986

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.72  E-value=4.9e-09  Score=76.66  Aligned_cols=38  Identities=42%  Similarity=1.133  Sum_probs=34.0

Q ss_pred             CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875          92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC  130 (734)
Q Consensus        92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C  130 (734)
                      ..|.+.+|+|.+. ++|||..|+|||..||.||+||.+|
T Consensus         5 ~~C~~~~F~C~~~-g~CI~~~~~CDG~~DC~DgSDE~~C   42 (50)
T 2knx_A            5 KTCGPSSFSCPGT-HVCVPERWLCDGDKDCADGADESIA   42 (50)
T ss_dssp             CTTCTTEEEETTT-TEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred             CCCCCCcEEcCCC-CeEcChhhcCCCCCCCCCCCccccc
Confidence            4688899999633 7999999999999999999999987

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.72  E-value=2.6e-06  Score=92.08  Aligned_cols=230  Identities=13%  Similarity=0.023  Sum_probs=141.8

Q ss_pred             eeeeee--ccceEEeecCCC----ceEEEec--------CCcceEEEeeeccCCeEEEEEeCC------CcEEEEecCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHH----EMTAIVN--------STKSATAIDFVFRTGMIFWSDISE------KKIYKAPIDEG  535 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~----~~~~l~~--------~~~~~~~i~~d~~~~~lyw~d~~~------~~I~~~~l~~g  535 (734)
                      +|+++.  +..|+.+++...    .+..++.        +...|..+...+. + ||++...+      +.|..++..+.
T Consensus        97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd-G-i~Vs~~g~~~g~~~g~v~vlD~~T~  174 (462)
T 2ece_A           97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPD-A-IYISALGNEEGEGPGGILMLDHYSF  174 (462)
T ss_dssp             EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSS-C-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred             EEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCC-e-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence            444443  456888877532    2333331        3457888877764 4 99987665      67888887643


Q ss_pred             CceEEEEeCCCCCcccee----eeccCCcEEEEeCC------------------CCeEEEEeCCCCce-EEEEcC-CCCC
Q psy8875         536 SERTVVIEEDKTIADGLA----VDWIYSHIYWTDAH------------------KNTIELANFEGTMR-KVLVRS-YLDE  591 (734)
Q Consensus       536 ~~~~~~~~~~~~~p~glA----vD~~~~~lY~td~~------------------~~~I~~~~ldG~~~-~~l~~~-~l~~  591 (734)
                      .....+ . .-..|.+++    +.+..+.||.++++                  .++|.+.+++.... .+|-.+ ....
T Consensus       175 ~v~~~~-~-~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~  252 (462)
T 2ece_A          175 EPLGKW-E-IDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRM  252 (462)
T ss_dssp             CEEEEC-C-SBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEE
T ss_pred             eEEEEE-c-cCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCc
Confidence            322222 1 112344444    45567778888753                  68999999976432 223222 2246


Q ss_pred             ceeEEE--eCCCCeEEEEec----CCCceEEEeccCCCceE--EEE--Ec-----C-----------CCCceeEEEecCC
Q psy8875         592 PRSLAL--NPIDGWMYWSDW----GQNAKIERAGMDGSHRN--MVI--VS-----D-----------IKWPNGLTLDLVQ  645 (734)
Q Consensus       592 P~~iav--D~~~g~LYwtd~----~~~~~I~~~~ldG~~~~--~lv--~~-----~-----------l~~P~glavD~~~  645 (734)
                      |+.|++  +|...++|++..    ...+.|++...++...+  .++  ..     .           -..|.+|.|++.+
T Consensus       253 P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG  332 (462)
T 2ece_A          253 ALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD  332 (462)
T ss_dssp             EEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS
T ss_pred             cceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC
Confidence            888877  999999999874    02367776655542211  111  11     1           1458999999999


Q ss_pred             CeEEEEeCCCCeEEEEecC-CCceEEEEcC--C------------CCCCCCeEEEE--ECCEEEEEeC------------
Q psy8875         646 RRLYWVDAKLNEISSCDYN-GGNRRLVLYS--P------------QTLSHPFSIST--FEDWLYWSDW------------  696 (734)
Q Consensus       646 ~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~--~------------~~~~~P~gl~v--~~~~lywtd~------------  696 (734)
                      ++||++.+..+.|..++++ ....+.+...  .            .....|.+|++  ++.+||+|+.            
T Consensus       333 rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~  412 (462)
T 2ece_A          333 KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPE  412 (462)
T ss_dssp             CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTT
T ss_pred             CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCC
Confidence            9999999999999999974 3333333221  1            01125888888  5889999992            


Q ss_pred             -CCCceEEE--eccCC
Q psy8875         697 -QQKAIYKA--NKFTG  709 (734)
Q Consensus       697 -~~~~v~~~--~~~~G  709 (734)
                       .+..|+++  +..+|
T Consensus       413 ~~~~~~~~~~vd~~~G  428 (462)
T 2ece_A          413 GLKGWMVKLNANPSGG  428 (462)
T ss_dssp             CCCCEEEEEEECTTSC
T ss_pred             CCceEEEEEEecCCCC
Confidence             34566645  66666

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.70  E-value=1.2e-08  Score=93.91  Aligned_cols=78  Identities=27%  Similarity=0.645  Sum_probs=63.6

Q ss_pred             cccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCcccc-ccCc---C-CCCCcccceeccCC-ceEEecCCCee
Q psy8875         388 GVDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCID-IDEC---E-TPGSCSQICLNEKG-GFKCECVAGYI  459 (734)
Q Consensus       388 ~~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~~-~~eC---~-~~~~C~~~C~n~~g-~~~C~C~~gy~  459 (734)
                      ++++|..+  .|.+  .|++++++|+|.|++||    .++.|.+ +++|   . .++.|+++|+++.+ +|.|.|++||.
T Consensus        46 did~C~~~--pC~n~g~C~~~~g~y~C~C~~G~----~G~~C~~~~~~c~~c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~  119 (142)
T 2c4f_L           46 DGDQCASS--PCQNGGSCKDQLQSYICFCLPAF----EGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYS  119 (142)
T ss_dssp             TCCGGGGC--CCCTTCEEEEETTEEEEECCTTE----ESTTSCEEGGGCCSTTTGGGGCSSEEECCTTSCCEEECCTTEE
T ss_pred             ccCcCcCC--CcCCCCEEeCCCCCEEeeCCCCc----cCCccccCccccccccCCCCCccCEeECCCCCCEEEECCCCce
Confidence            67888864  4554  89999999999999999    4788986 6775   2 24678899999999 99999999999


Q ss_pred             eCCCCCccccccc
Q psy8875         460 KDPHHPTQCKAAE  472 (734)
Q Consensus       460 ~~~~~~t~C~~~~  472 (734)
                      +..++++ |..+.
T Consensus       120 l~~dG~~-C~~~~  131 (142)
T 2c4f_L          120 LLADGVS-CTPTV  131 (142)
T ss_dssp             ECTTSSC-EEESS
T ss_pred             ECCCCCC-CCCCC
Confidence            9877665 87643

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.69  E-value=6.9e-09  Score=76.80  Aligned_cols=43  Identities=30%  Similarity=0.797  Sum_probs=39.0

Q ss_pred             cccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      |..++++|+|.|+|++++|+|.|++||+|..|+++|.+++||.
T Consensus         1 C~~~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~p   43 (51)
T 1kig_L            1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERFP   43 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSSC
T ss_pred             CCCCCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCccc
Confidence            4456788999999999999999999999999999999999973

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=98.69  E-value=3.6e-09  Score=97.64  Aligned_cols=49  Identities=29%  Similarity=0.628  Sum_probs=42.6

Q ss_pred             Cc-cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         386 KC-GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       386 ~C-~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      .| +++||...+..|.  +.|++++++|+|.|++||.+..+++.|..+++|+
T Consensus        92 ~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C~  143 (143)
T 2bou_A           92 TCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE  143 (143)
T ss_dssp             CEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCBC
T ss_pred             CcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCccC
Confidence            57 7999987556776  6899999999999999999999999999888774

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.69  E-value=1e-08  Score=97.42  Aligned_cols=57  Identities=30%  Similarity=0.701  Sum_probs=47.5

Q ss_pred             CCCCCCCCceecC--CCceecCcCccCCCCCCCCCCccc--ccccC-cccCCce--eccCCCCeeeC
Q psy8875          51 SKPCRNSTMFRCT--GGMCIPSTWVCDGQNDCPDGVDEK--KCQKR-ICGQEEF--TCRSSPGECVP  110 (734)
Q Consensus        51 ~~~C~~~~~f~C~--~g~Ci~~~~~cdg~~dC~dg~de~--~C~~~-~C~~~~~--~C~~~~~~Ci~  110 (734)
                      ..+|+ +.+|+|.  +|.|||..|+|||..||+|||||.  +|... +|.+.+|  +|.+  +.|+.
T Consensus        50 ~~~C~-~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~--d~C~k  113 (220)
T 2gtl_N           50 GTHCE-KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTW--HGCLA  113 (220)
T ss_dssp             CCSSC-TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEE--CSSCC
T ss_pred             CCCCC-CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecC--Chhhc
Confidence            56898 8999995  689999999999999999999996  99887 8988776  5655  34543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.69  E-value=5.1e-06  Score=90.74  Aligned_cols=225  Identities=8%  Similarity=0.023  Sum_probs=154.6

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ..|+..++++.....+......+.+++|.+...+|+++....  ..|+..++.++... .+. .....+..+++.+.++.
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~-~~~~~~~~~~~spdg~~  236 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVA-SFPRHNGAPAFSPDGSK  236 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEE-CCSSCEEEEEECTTSSE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eee-cCCCcccCEEEcCCCCE
Confidence            578888888877777766666788999999888898887543  58999998855433 333 23345678889888888


Q ss_pred             EEEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         561 IYWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       561 lY~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      |+++...  ...|++.++.+.....+. ........+++.|...+|+++.. ....+|++.++++...+.+. .......
T Consensus       237 la~~~~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~  314 (415)
T 2hqs_A          237 LAFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQ  314 (415)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CSSSEEE
T ss_pred             EEEEEecCCCceEEEEECCCCCEEeCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe-cCCCccc
Confidence            8887654  456999999876554443 33356778999998777887763 23358999998876554332 2234456


Q ss_pred             eEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCC--ceEEEeccCCCc
Q psy8875         638 GLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQK--AIYKANKFTGDN  711 (734)
Q Consensus       638 glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~--~v~~~~~~~G~~  711 (734)
                      .+++.+.+++|+++...  ...|+.+++++...+.+...    ....++++.  +..|+++....+  .|+.++.. |+.
T Consensus       315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~----~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~  389 (415)
T 2hqs_A          315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST----FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRF  389 (415)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS----SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCC
T ss_pred             CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC----CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCc
Confidence            78999888889888654  45899999987776554321    255667773  456776654433  67887754 555


Q ss_pred             eEEEe
Q psy8875         712 LTAIT  716 (734)
Q Consensus       712 ~~~l~  716 (734)
                      .+.|.
T Consensus       390 ~~~l~  394 (415)
T 2hqs_A          390 KARLP  394 (415)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            55554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.68  E-value=8.9e-07  Score=97.71  Aligned_cols=210  Identities=11%  Similarity=0.054  Sum_probs=131.0

Q ss_pred             ceEEEecCCcceEEEeeeccCC-eEEEEEeCCCcEEEEecCCCCceEEEE--e----CC-----CCCccceeeecc---C
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTG-MIFWSDISEKKIYKAPIDEGSERTVVI--E----ED-----KTIADGLAVDWI---Y  558 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l~~g~~~~~~~--~----~~-----~~~p~glAvD~~---~  558 (734)
                      .++.++.++..|++|++.+... +||+++. .++|+++..++....+.++  .    .+     ...+.|||+++.   +
T Consensus         5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er-~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C            5 CIQEVVSGLRQPVGALHSGDGSQRLFILEK-EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEEEESSEEEEECCSSSSCCEEEEET-TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             EEEEeccCCCCceEEEECCCCCeEEEEEeC-CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            4556777889999999998653 7999975 5789888765321111111  1    11     234678999974   6


Q ss_pred             CcEEEEeCC--C----------CeEEEEeCCC--------CceEEEEc----CCCCCceeEEEeCCCCeEEEEec--C--
Q psy8875         559 SHIYWTDAH--K----------NTIELANFEG--------TMRKVLVR----SYLDEPRSLALNPIDGWMYWSDW--G--  610 (734)
Q Consensus       559 ~~lY~td~~--~----------~~I~~~~ldG--------~~~~~l~~----~~l~~P~~iavD~~~g~LYwtd~--~--  610 (734)
                      +.||++...  .          .+|.++.++.        ...++|+.    ........|+++| .|+||++--  +  
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMIT  162 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCC
Confidence            788887542  1          3787777742        12344442    2345667899998 689999941  1  


Q ss_pred             ------------CCceEEEeccCCCc-------------------eEEEEEcCCCCceeEEEecCCC------eEEEEeC
Q psy8875         611 ------------QNAKIERAGMDGSH-------------------RNMVIVSDIKWPNGLTLDLVQR------RLYWVDA  653 (734)
Q Consensus       611 ------------~~~~I~~~~ldG~~-------------------~~~lv~~~l~~P~glavD~~~~------~LYw~D~  653 (734)
                                  ..++|.|++.||+.                   +..|....+..|.||++|+.++      +||.+|.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence                        13689999999941                   2346677899999999998754      7787885


Q ss_pred             -C----CCeEEEEecCCCce---EEEEc-CCCCCCCCeEEEEECC--------EEEEEeCCCCceEEEecc
Q psy8875         654 -K----LNEISSCDYNGGNR---RLVLY-SPQTLSHPFSISTFED--------WLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       654 -~----~~~I~~~~~dG~~~---~~i~~-~~~~~~~P~gl~v~~~--------~lywtd~~~~~v~~~~~~  707 (734)
                       +    ..+|..+. .|.+.   ..++. .......|.|++++.+        .+|++++. ++|+++...
T Consensus       243 ~G~~~~~~ei~~i~-~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~  311 (463)
T 2wg3_C          243 NGKNRSSARILQII-KGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQS  311 (463)
T ss_dssp             ------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-
T ss_pred             CCCCCCCCeEeeec-cCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeC
Confidence             2    12454442 23211   11221 1111146789998544        48999997 778888643

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=98.65  E-value=2.1e-08  Score=91.39  Aligned_cols=115  Identities=23%  Similarity=0.537  Sum_probs=71.0

Q ss_pred             CCCCCceecCCC-CeecC--CcccCCCCCCCCCCCCCCCC--CCCCCCCceecCCCCccccccccccCCCCCCCCCCCCC
Q psy8875         264 TCRSDEFTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQ--PVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA  338 (734)
Q Consensus       264 ~C~~~~~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~--~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~  338 (734)
                      +|......|.++ +|++.  +++|    .|..|+.+..|+  ...|..  .+|.++++|++                   
T Consensus         7 eC~~~~~~C~~~g~C~~~~g~~~C----~C~~Gy~G~~C~~~~~~C~~--~~C~~~~~C~~-------------------   61 (135)
T 2vj3_A            7 ECSLGANPCEHAGKCINTLGSFEC----QCLQGYTGPRCEIDVNECVS--NPCQNDATCLD-------------------   61 (135)
T ss_dssp             TTTSSSCSSSTTCEEEECSSSEEE----ECCTTEESTTSCEECCTTTT--CCCCSSCEEEE-------------------
T ss_pred             cccCCCCCCCCCCEeECCCCCEEE----ECCCCCcCCcccccCccCCC--CCCCCCCEEeC-------------------
Confidence            454333457654 88765  6788    788888888885  344543  25666566665                   


Q ss_pred             CCCCCCccccccccccCCCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCc
Q psy8875         339 TPMNSSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGY  418 (734)
Q Consensus       339 ~~c~~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~  418 (734)
                          ..+.|.|                         .|+.||.+....-++++|...+......|++++++|+|.|++||
T Consensus        62 ----~~g~~~C-------------------------~C~~G~~G~~C~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~  112 (135)
T 2vj3_A           62 ----QIGEFQC-------------------------ICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGF  112 (135)
T ss_dssp             ----CSSCEEE-------------------------ECCTTEESSSSCEECCTTTTCCSTTTCEEEECSSCEEEECCTTE
T ss_pred             ----CCCCcee-------------------------eCCCCCcCCcceecCCcccCCCcCCCCEeECCCCCeEEECCCCC
Confidence                3355667                         44555543321114677765433334589999999999999999


Q ss_pred             EecCCCCccc-cccCcCCC
Q psy8875         419 KLSSNRHTCI-DIDECETP  436 (734)
Q Consensus       419 ~l~~~~~~C~-~~~eC~~~  436 (734)
                      .    +..|+ +++||+..
T Consensus       113 ~----G~~C~~~i~~C~~~  127 (135)
T 2vj3_A          113 T----GHLCQVDLHHILDA  127 (135)
T ss_dssp             E----SSSSCEECC-----
T ss_pred             c----CCccCccCccccCC
Confidence            4    67895 89999743

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.63  E-value=9.9e-06  Score=82.25  Aligned_cols=225  Identities=11%  Similarity=0.059  Sum_probs=145.5

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-CCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-GSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+..++.+.....+......+.+++|.+....|++..  .+.|+..++.+ +....+........+..+++.+.++.|
T Consensus        22 ~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           22 SSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALY   99 (297)
T ss_dssp             EEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEE
T ss_pred             eeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEE
Confidence            345666666666555555556788999998888777764  67899999885 443332211112456789999888888


Q ss_pred             EEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCce
Q psy8875         562 YWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPN  637 (734)
Q Consensus       562 Y~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~  637 (734)
                      +++...   ...|+..++.+...+.+..  ...+..+++.|...+|+++... ...+|+.+++++.....+. .....+.
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~  176 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGTPRLMTK--NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRND  176 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCCCEECCS--SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEE
T ss_pred             EEEEeCCCCcceEEEEECCCCceEEeec--CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccc
Confidence            888743   5788888887766554432  2347788999988888866532 2247888777765544332 3334578


Q ss_pred             eEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCC----------CCceEE
Q psy8875         638 GLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQ----------QKAIYK  703 (734)
Q Consensus       638 glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~----------~~~v~~  703 (734)
                      .+++++.+..|+++..  ...+|+.+++++...+.+...   ......+++  .+.+|+++...          ...|+.
T Consensus       177 ~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~  253 (297)
T 2ojh_A          177 GPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS---AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL  253 (297)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC---SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred             cceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC---CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence            8999888888888753  455788887777665554321   122344555  34567666542          256888


Q ss_pred             EeccCCCceEEE
Q psy8875         704 ANKFTGDNLTAI  715 (734)
Q Consensus       704 ~~~~~G~~~~~l  715 (734)
                      ++..+++...+.
T Consensus       254 ~d~~~~~~~~~~  265 (297)
T 2ojh_A          254 MDMDGGNVETLF  265 (297)
T ss_dssp             EETTSCSCEEEE
T ss_pred             EecCCCCceeee
Confidence            887777655444

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.62  E-value=1e-08  Score=76.57  Aligned_cols=43  Identities=35%  Similarity=0.786  Sum_probs=39.3

Q ss_pred             cccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccCcC
Q psy8875         392 CAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      |...+++|+|.|+|+++ +|+|.|++||+|..|+++|.+++||.
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~   45 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   45 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence            55567889999999999 79999999999999999999999984

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.62  E-value=3.7e-08  Score=103.77  Aligned_cols=80  Identities=28%  Similarity=0.710  Sum_probs=64.7

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc-cccCcCC--CCCcccceeccCCceEEecCCCeeeCCCC
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI-DIDECET--PGSCSQICLNEKGGFKCECVAGYIKDPHH  464 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~~--~~~C~~~C~n~~g~~~C~C~~gy~~~~~~  464 (734)
                      ++++|..+++.-...|.+..++|+|.|++||    .++.|+ +++||..  ..+|.+.|+|+.++|.|.|++||.+..+.
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~----~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~   79 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGY----EGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDH   79 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSC----CSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTS
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCC----cCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccc
Confidence            4566765543334579999999999999999    588998 9999986  37899999999999999999999998765


Q ss_pred             Cccccccc
Q psy8875         465 PTQCKAAE  472 (734)
Q Consensus       465 ~t~C~~~~  472 (734)
                      ++ |++.+
T Consensus        80 ~~-C~~~~   86 (317)
T 3h5c_B           80 KQ-CVPHD   86 (317)
T ss_dssp             SC-CEECS
T ss_pred             cc-ccccc
Confidence            55 87644

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.61  E-value=2.4e-06  Score=89.12  Aligned_cols=152  Identities=11%  Similarity=-0.046  Sum_probs=102.5

Q ss_pred             EEEEEeCCCcEEEEecCCCCceEEEEeCCCC-CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCCC----C
Q psy8875         517 IFWSDISEKKIYKAPIDEGSERTVVIEEDKT-IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSYL----D  590 (734)
Q Consensus       517 lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~l----~  590 (734)
                      ++++....+.|+.+++..+.....+...... .|.++++++.++.||++....+.|.+.++...... .+.....    .
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            4555556666777776644332222211111 58999999888899999988899999998654433 3332221    2


Q ss_pred             CceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         591 EPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      .|.+++++|...+||++..+          ....|.+.++++......+.. -..|.++++++.+++||++   .+.|..
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~---~~~i~~  158 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL---GRDLHV  158 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE---SSSEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe---CCeEEE
Confidence            78999999988899999521          247888888876544333333 3468999999888889999   367999


Q ss_pred             EecCCCceEEEE
Q psy8875         661 CDYNGGNRRLVL  672 (734)
Q Consensus       661 ~~~dG~~~~~i~  672 (734)
                      +++.+......+
T Consensus       159 ~d~~~~~~~~~~  170 (337)
T 1pby_B          159 MDPEAGTLVEDK  170 (337)
T ss_dssp             EETTTTEEEEEE
T ss_pred             EECCCCcEeeee
Confidence            998766544333

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.61  E-value=8.3e-09  Score=74.85  Aligned_cols=36  Identities=42%  Similarity=1.036  Sum_probs=33.2

Q ss_pred             CCcccccCcCC-----CCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCG-----NNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~-----~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ..|...+|+|.     +++|||.+|+|||..||.|||||.+
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            36888999998     7899999999999999999999987

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.59  E-value=1.9e-06  Score=93.79  Aligned_cols=107  Identities=7%  Similarity=0.022  Sum_probs=76.8

Q ss_pred             CCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875         514 TGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM  580 (734)
Q Consensus       514 ~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~  580 (734)
                      ..++|+++...    +.|..+++..+.....+ ..+ ..| +|++++.++.||+++.         ..+.|.++++....
T Consensus        84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I-~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMT-DGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCEEEEECCCcCCCCCeEEEEECCCCEEEEEE-ECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            57899999765    78999998754433333 323 368 9999999999999985         34679999886543


Q ss_pred             -eEEEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         581 -RKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       581 -~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                       ...|...      ....|.+++++|..++||+++......|.++++...
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~  210 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGK  210 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCC
Confidence             3333222      135799999999999999998643467877777543

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=98.59  E-value=1.9e-08  Score=92.75  Aligned_cols=57  Identities=23%  Similarity=0.586  Sum_probs=47.0

Q ss_pred             CCCCCCCCCCCCc-cccccccCCCCCcCcc-ccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         375 DCPLMQDEDPTKC-GVDECAKDNGGCLHKC-VDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~~~C-~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      .|+.||.+.  .| ++++|...++.|.+.| ++++++|+|.|++||.|..++++|.+++++
T Consensus        72 ~C~~G~~G~--~C~~~deC~~~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~dG~~C~~~~~~  130 (146)
T 1x7a_L           72 WCQVGFEGK--NCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQKSCKPAVPF  130 (146)
T ss_dssp             ECCSSEEST--TTCEECCTTSGGGSCSSBCCCCSSSCCCCBCCTTEEECTTSSSEEECSSS
T ss_pred             ecCCCCcCC--cCCCCccccCCCCCCcCCCCCCCCCCEEeEcCCCcEeCCCCCcCCCCCCC
Confidence            555565533  46 5688987777899999 999999999999999999999999988764

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.59  E-value=5.8e-08  Score=101.90  Aligned_cols=107  Identities=30%  Similarity=0.699  Sum_probs=63.6

Q ss_pred             CCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC
Q psy8875         183 HCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH  262 (734)
Q Consensus       183 ~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~  262 (734)
                      .|+..|.+.+.|..   .+.|.|++||.|..++..  .+. .+|.       ++|+|+. ...|.    |..|+.+..|+
T Consensus       150 ~C~~~C~~~G~C~~---~~~C~C~~G~~G~~C~~~--~C~-~~C~-------~~G~C~~-~~~C~----C~~G~~G~~C~  211 (324)
T 2ygq_A          150 ECPGGCRNGGFCNE---RRICECPDGFHGPHCEKA--LCT-PRCM-------NGGLCVT-PGFCI----CPPGFYGVNCD  211 (324)
T ss_dssp             CCSSCCCSSCEECT---TSCEECCTTEESSSSCEE--SSS-SCCC-------TTCEECS-SCCEE----CCTTCBTTTTC
T ss_pred             CCCCCCCCCCEECC---CCeEECCCCCcCCCCCCC--CCC-CCCC-------CCCEEcC-CCEEe----CCCCccCCCcc
Confidence            45566777777754   478999999999877653  111 2444       3567765 45666    99999998886


Q ss_pred             -CCCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccc
Q psy8875         263 -ETCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACI  318 (734)
Q Consensus       263 -~~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci  318 (734)
                       ..|..   .|.++ +|+.. ..|    .|..|+.+..|+...|.   .+|.++++|+
T Consensus       212 ~~~C~~---~C~~~G~C~~~-~~C----~C~~G~~G~~C~~~~C~---~~C~~~g~C~  258 (324)
T 2ygq_A          212 KANCST---TCFNGGTCFYP-GKC----ICPPGLEGEQCEISKCP---QPCRNGGKCI  258 (324)
T ss_dssp             BCCCSS---CCCSSCCBSCS-SCB----CCCTTCCTTTTC------------------
T ss_pred             cCcCCC---CCCCCCeeCCC-Cee----eCCCCccCCCCCcCcCC---CcCCCCCEEC
Confidence             35642   47765 88763 566    78888888888755553   2455544443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.57  E-value=8.6e-06  Score=85.40  Aligned_cols=155  Identities=10%  Similarity=-0.024  Sum_probs=102.6

Q ss_pred             EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc
Q psy8875         507 AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR  586 (734)
Q Consensus       507 ~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~  586 (734)
                      ++++. ..+.+|++....+.|+.+++..+.....+.......|.++++++.++.||++....+.|.+.++........+.
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            44554 36788888888899999998755433333222222689999998888899999888999999997554433332


Q ss_pred             -CC-----CCCceeEEEeCCCCeEEEEecC----------CCceEEEeccCCCc-eE--EEEEcCCCCceeEEEecCCCe
Q psy8875         587 -SY-----LDEPRSLALNPIDGWMYWSDWG----------QNAKIERAGMDGSH-RN--MVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       587 -~~-----l~~P~~iavD~~~g~LYwtd~~----------~~~~I~~~~ldG~~-~~--~lv~~~l~~P~glavD~~~~~  647 (734)
                       ..     ...|.+++++|...+||++...          ....|...++.... .+  .... .-..+.+|++++.+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-  160 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-  160 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence             21     2348999999988899998732          12578888876421 11  1222 223578888986665 


Q ss_pred             EEEEeCCCCeEEEEecCCCc
Q psy8875         648 LYWVDAKLNEISSCDYNGGN  667 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~  667 (734)
                      ||++.   +.|..+++....
T Consensus       161 l~~~~---~~i~~~d~~~~~  177 (349)
T 1jmx_B          161 LYVAG---PDIYKMDVKTGK  177 (349)
T ss_dssp             EEEES---SSEEEECTTTCC
T ss_pred             EEEcc---CcEEEEeCCCCc
Confidence            88764   238887765443

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=98.56  E-value=1.1e-08  Score=98.82  Aligned_cols=92  Identities=28%  Similarity=0.727  Sum_probs=64.9

Q ss_pred             CCCCCCCCC-CCCc-cccccccC--CCCCc--CccccCC-----CcceeecCCCcEecCCCCccccccCcCCCCCcc--c
Q psy8875         375 DCPLMQDED-PTKC-GVDECAKD--NGGCL--HKCVDLP-----VGYMCECNEGYKLSSNRHTCIDIDECETPGSCS--Q  441 (734)
Q Consensus       375 ~C~~g~d~~-~~~C-~~~eC~~~--~~~C~--~~C~~~~-----~~~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~--~  441 (734)
                      .|++||.+. ...| +++||...  ...|.  ..|++++     ++|+|.|++||.+..  ..|. +++|... +|.  .
T Consensus        28 ~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~--~~C~-~d~C~~~-~C~~~g  103 (186)
T 1z1y_A           28 MCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE--DTCV-LDVCQYX-NCGESG  103 (186)
T ss_dssp             EECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET--TEEE-EGGGTTC-CCCTTE
T ss_pred             ECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC--CCCC-CCcCcCC-CCCCCC
Confidence            445555332 2346 67888743  45675  4899999     899999999998853  3676 7889743 464  3


Q ss_pred             cee----ccCCceEEecCCCeeeCCCCCccccc
Q psy8875         442 ICL----NEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       442 ~C~----n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      .|+    ++.++|+|.|++||.+.......|..
T Consensus       104 ~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~  136 (186)
T 1z1y_A          104 ECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTX  136 (186)
T ss_dssp             EEEEEEETTEEEEEEEECTEEEEETTTTTEEEE
T ss_pred             EEeeCCcCCCCCceEECCCCCcccCCCCCcceE
Confidence            676    89999999999999995422223654

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=98.54  E-value=8.7e-08  Score=107.95  Aligned_cols=129  Identities=22%  Similarity=0.503  Sum_probs=81.1

Q ss_pred             cCCC-CeecC---CcccCCCCCCCCCCCC--CCCC-CCCCCCCceecCCCC---ccccccccccCCCCCCCCCCCCCCCC
Q psy8875         272 CANG-NCIQR---IWLCDGDDDCKDGSDE--KSCQ-PVKCTAGQFTCQNLT---ACIPDKWVCDGDTVEKDSTCPNATPM  341 (734)
Q Consensus       272 C~~g-~Ci~~---~~~Cdg~~dC~dgsDe--~~C~-~~~C~~~~~~C~~~~---~Ci~~~~~Cdg~~dC~d~~C~~~~~c  341 (734)
                      |.++ +|++.   +++|-   .|..|+.+  ..|+ ...|......|.+++   +|++                      
T Consensus        11 C~~gg~C~n~~~Gsy~C~---~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvN----------------------   65 (634)
T 1yo8_A           11 CFPGAQCSSFPDGSWSCG---FCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVN----------------------   65 (634)
T ss_dssp             SCTTCCEEECTTSCEEEC---CCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEE----------------------
T ss_pred             CCCCCEEecCCCCCeECC---cCCCccCCCCCCccccccccCCCCcccCCccccceee----------------------
Confidence            6665 77764   26662   46777654  5565 334544333365544   4554                      


Q ss_pred             CCCccccccccc-cCCCCCcccccccccccCCCCCCCCCCCCCCCCc-cccccccCCCCCc--CccccCC----Ccceee
Q psy8875         342 NSSVRIEGAVAF-IPPGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKC-GVDECAKDNGGCL--HKCVDLP----VGYMCE  413 (734)
Q Consensus       342 ~~~~~~~C~~~~-~~~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C-~~~eC~~~~~~C~--~~C~~~~----~~~~C~  413 (734)
                       ..++|+|   . |++||.+..|.......         .......| +++||...+..|.  +.|++++    ++|+|.
T Consensus        66 -t~gsY~C---~~C~~Gy~G~~c~g~g~~~---------~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~  132 (634)
T 1yo8_A           66 -TQPGFHC---LPCPPRYRGNQPVGVGLEA---------AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCE  132 (634)
T ss_dssp             -CSSSEEE---CCCCTTEEECCCEESSSHH---------HHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEE
T ss_pred             -ccCceec---ccCCCCcccCccccccccc---------cccCCCcccccccccCCCcccccCccccccccccccceeee
Confidence             4567888   5 77777655554211000         00122347 7899987667786  5899999    999999


Q ss_pred             cCCCcEecCCCCccc---cccCcCC-CCCcc
Q psy8875         414 CNEGYKLSSNRHTCI---DIDECET-PGSCS  440 (734)
Q Consensus       414 C~~G~~l~~~~~~C~---~~~eC~~-~~~C~  440 (734)
                      |++||..  ++++|+   +++||.. .+.|.
T Consensus       133 C~~Gy~G--dG~~Ce~d~DiDeC~~~~~~C~  161 (634)
T 1yo8_A          133 CQTGYAG--DGLICGEDSDLDGWPNLNLVCA  161 (634)
T ss_dssp             ECTTEEE--SSSSEEECTTSSSSCSSCCTTT
T ss_pred             ccCCccc--cCcccccccCcccccCCCCccc
Confidence            9999986  678996   8999963 35554

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.54  E-value=2.4e-08  Score=94.80  Aligned_cols=60  Identities=22%  Similarity=0.551  Sum_probs=49.0

Q ss_pred             ccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC--CCCCC-Cccccc--CcCCCCceEe
Q psy8875          90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK--SCKNR-TCQASE--FRCGNNRCIP  149 (734)
Q Consensus        90 ~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~--~C~~~-~C~~~~--f~C~~g~Ci~  149 (734)
                      ....|.+.+|+|.+.+|+|||..|+|||..||+||+||.  +|... +|.+.+  ++|.++.|+.
T Consensus        49 ~~~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d~C~k  113 (220)
T 2gtl_N           49 EGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLA  113 (220)
T ss_dssp             HCCSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEECSSCC
T ss_pred             CCCCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCChhhc
Confidence            345788899999643379999999999999999999996  89887 887755  4677777754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.53  E-value=1.9e-05  Score=82.56  Aligned_cols=187  Identities=16%  Similarity=0.124  Sum_probs=121.4

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCC-------eEEEEEeC--CCcEEEEecCCCCc-eEEE-
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTG-------MIFWSDIS--EKKIYKAPIDEGSE-RTVV-  541 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~-------~lyw~d~~--~~~I~~~~l~~g~~-~~~~-  541 (734)
                      ..++++.  ...+..++++|.....+..  .++.+|++-+.-.       .+|.++..  .++|..+.++..+. .+.+ 
T Consensus        40 ~s~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~  117 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMT  117 (355)
T ss_dssp             GCEEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECS
T ss_pred             ccEEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecc
Confidence            3445533  3568888998877766532  5667777655221       57888877  78777766642221 2222 


Q ss_pred             -----EeCCCCCccceee--eccCCc--EEEEeCCCCeEEEEeC----CCCceEEEEc--CCCCCceeEEEeCCCCeEEE
Q psy8875         542 -----IEEDKTIADGLAV--DWIYSH--IYWTDAHKNTIELANF----EGTMRKVLVR--SYLDEPRSLALNPIDGWMYW  606 (734)
Q Consensus       542 -----~~~~~~~p~glAv--D~~~~~--lY~td~~~~~I~~~~l----dG~~~~~l~~--~~l~~P~~iavD~~~g~LYw  606 (734)
                           +...+..|.||++  ++.++.  +|+++.. +++....+    +|.....++.  .....|.++++|+..++||+
T Consensus       118 ~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          118 DPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             CTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             ccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence                 1234578999999  877774  6666664 77777555    2322222221  22358999999999999999


Q ss_pred             EecCCCceEEEeccCCC--c-eEEEEE---cCC-CCceeEEEecCC---CeEEEEeCCCCeEEEEecCCC
Q psy8875         607 SDWGQNAKIERAGMDGS--H-RNMVIV---SDI-KWPNGLTLDLVQ---RRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       607 td~~~~~~I~~~~ldG~--~-~~~lv~---~~l-~~P~glavD~~~---~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .+..  ..||+++.+..  . ++++..   ..+ ..|.||+|.+..   ++|+.++.+.++...++..++
T Consensus       197 ~eEd--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~  264 (355)
T 3amr_A          197 AEED--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGK  264 (355)
T ss_dssp             EETT--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             eccc--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCC
Confidence            9964  45999996522  2 333322   233 378999996443   589999988888888888654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.52  E-value=2.8e-06  Score=94.95  Aligned_cols=193  Identities=11%  Similarity=0.056  Sum_probs=130.5

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee-e-ccCCcEEEEeC-----------------CCCeEEEE
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV-D-WIYSHIYWTDA-----------------HKNTIELA  574 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv-D-~~~~~lY~td~-----------------~~~~I~~~  574 (734)
                      .++||+.+..+.+|.+++++......++.-.....|.|+++ . +.++.||.+..                 ..+.|.++
T Consensus       101 G~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvI  180 (595)
T 1fwx_A          101 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  180 (595)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEE
T ss_pred             CCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEE
Confidence            77999999999999999998543333332223467999998 4 78999999952                 23467787


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCC-------------c-----------------------eEEEe
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQN-------------A-----------------------KIERA  618 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-------------~-----------------------~I~~~  618 (734)
                      +.+......-+.-+ .+|.+++++|..+++|++.....             .                       .|.++
T Consensus       181 D~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI  259 (595)
T 1fwx_A          181 DADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  259 (595)
T ss_dssp             ETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             ECCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence            87754332222112 27999999999999999985431             1                       12222


Q ss_pred             ccCC---CceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc---------eEEEEcCCCCCCCCeEEEE
Q psy8875         619 GMDG---SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN---------RRLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       619 ~ldG---~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~---------~~~i~~~~~~~~~P~gl~v  686 (734)
                      +...   +.....+.. -..|+|+.+++.+++||+++...++|..++++...         +..++........|..+++
T Consensus       260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF  338 (595)
T 1fwx_A          260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  338 (595)
T ss_dssp             ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE
T ss_pred             eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE
Confidence            2221   110111111 14699999999999999999999999999987321         1112222233457999999


Q ss_pred             E-CCEEEEEeCCCCceEEEeccC
Q psy8875         687 F-EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       687 ~-~~~lywtd~~~~~v~~~~~~~  708 (734)
                      . .+++|.+.+-.+.|.+++..+
T Consensus       339 ~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          339 DGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCCeEEEEEecCCcEEEEEhhH
Confidence            4 469999999999999888654

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=98.52  E-value=2.5e-08  Score=83.12  Aligned_cols=54  Identities=33%  Similarity=0.667  Sum_probs=43.7

Q ss_pred             CCCCCCCC---CCCCc-cccccccCCCCCc-CccccCCCcceeecCCCcEecCCCCccc
Q psy8875         375 DCPLMQDE---DPTKC-GVDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       375 ~C~~g~d~---~~~~C-~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|+.||..   .+..| ++|||...+..|. +.|+|++++|+|.|++||.+.+++++|+
T Consensus        28 ~C~~Gy~~~~~~g~~C~dideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~~~~Ci   86 (86)
T 1lmj_A           28 KCDEGYESGFMMMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI   86 (86)
T ss_dssp             CCCSSEEECTTTSSSEEECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred             eCCCCcCccCCCCCccCCcccccCCCCcCCCCEeEcCCCCEEEECcCCcccCCCCCccC
Confidence            56666642   24467 8999998777786 6899999999999999999998888874

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.52  E-value=3.6e-05  Score=80.53  Aligned_cols=145  Identities=16%  Similarity=0.195  Sum_probs=97.3

Q ss_pred             cEEEEeCC--CCeEEEEeCCCC--ceEEE------EcCCCCCceeEEE--eCCCCe--EEEEecCCCceEEEecc----C
Q psy8875         560 HIYWTDAH--KNTIELANFEGT--MRKVL------VRSYLDEPRSLAL--NPIDGW--MYWSDWGQNAKIERAGM----D  621 (734)
Q Consensus       560 ~lY~td~~--~~~I~~~~ldG~--~~~~l------~~~~l~~P~~iav--D~~~g~--LYwtd~~~~~~I~~~~l----d  621 (734)
                      .+|.++..  .++|.++.++..  ..+.+      +...+..|.||++  ++..+.  +|+++  +.++++...+    +
T Consensus        88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~  165 (355)
T 3amr_A           88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKN  165 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTT
T ss_pred             EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCC
Confidence            46899988  899998877532  23333      1144588999999  887774  66666  3467766444    3


Q ss_pred             CCceEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CC-ceEEEEcC-CCCC-CCCeEEEEE-C----C
Q psy8875         622 GSHRNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GG-NRRLVLYS-PQTL-SHPFSISTF-E----D  689 (734)
Q Consensus       622 G~~~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~-~~~~i~~~-~~~~-~~P~gl~v~-~----~  689 (734)
                      |.....++.  ..-..|.|+++|...++||+++... .|++++.+  +. .++.+... ...+ ..+-||+++ .    +
T Consensus       166 g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~eEd~-GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~g  244 (355)
T 3amr_A          166 GYISGKKVRAFKMNSQTEGMAADDEYGRLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKG  244 (355)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTTTEEEEEETTT-EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCE
T ss_pred             CcccceEEEEecCCCCcceEEEcCCCCeEEEecccc-eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCE
Confidence            322222332  1235799999999999999999875 49999955  32 23433221 1223 378999995 3    5


Q ss_pred             EEEEEeCCCCceEEEecc
Q psy8875         690 WLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       690 ~lywtd~~~~~v~~~~~~  707 (734)
                      +|++++-+++++..+++.
T Consensus       245 yLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          245 YLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEEEGGGTEEEEEESS
T ss_pred             EEEEEcCCCCEEEEEECC
Confidence            899999988888777764

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.49  E-value=4.6e-08  Score=94.00  Aligned_cols=66  Identities=27%  Similarity=0.600  Sum_probs=48.2

Q ss_pred             CCCCCCCCCceecCC--CceecCcCccCCCCCCCCCCccc--ccccC-cccCCceeccCCCCeeeCCCCCCCCCCCCCCC
Q psy8875          50 RSKPCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEK--KCQKR-ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDG  124 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~--~C~~~-~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg  124 (734)
                      ...+|+ +.+|+|.+  |+||+..|+|||..||+|||||.  +|... .+...+|.+       .      .....|.++
T Consensus        50 ~~~~C~-~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g-------~------~~~~~C~~~  115 (217)
T 2gtl_M           50 EEHHCD-EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG-------L------ATWTSCEDL  115 (217)
T ss_dssp             SCCCCC-TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEE-------E------EEESSSCSC
T ss_pred             CCCCCC-CCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCCcccCCccccc-------c------cCcccCCCC
Confidence            356898 89999965  99999999999999999999997  78654 333333432       1      123367777


Q ss_pred             CCcCC
Q psy8875         125 SDEKS  129 (734)
Q Consensus       125 ~de~~  129 (734)
                      ++|..
T Consensus       116 ~pe~~  120 (217)
T 2gtl_M          116 NPDHA  120 (217)
T ss_dssp             CSEEE
T ss_pred             CCCee
Confidence            76653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.49  E-value=1.8e-05  Score=91.58  Aligned_cols=231  Identities=8%  Similarity=-0.002  Sum_probs=141.1

Q ss_pred             eeeee--ccceEEeecC--C-CceEEEec-----CCcceEEEeeeccCCeEEEEEeCC---------CcEEEEecCCC--
Q psy8875         477 LLFAR--KHDIRKISLD--H-HEMTAIVN-----STKSATAIDFVFRTGMIFWSDISE---------KKIYKAPIDEG--  535 (734)
Q Consensus       477 l~~~~--~~~I~~i~l~--~-~~~~~l~~-----~~~~~~~i~~d~~~~~lyw~d~~~---------~~I~~~~l~~g--  535 (734)
                      |+|+.  ...|+.++++  + .....+..     ......+++|.+..+.|+++....         ..|++++++++  
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            55554  3568888887  4 55555544     234567899999888898876431         47999999851  


Q ss_pred             ---CceEEEEeCCCCCccceeeeccCCcEEEEeCCC-------CeEEEEeCCC-C---ceEEEEcCCCCCceeEEEeCCC
Q psy8875         536 ---SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-------NTIELANFEG-T---MRKVLVRSYLDEPRSLALNPID  601 (734)
Q Consensus       536 ---~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-------~~I~~~~ldG-~---~~~~l~~~~l~~P~~iavD~~~  601 (734)
                         ...+.+.........++++.+.++.|+|+....       ..|+++++++ .   ..+.+.......+..+++.|..
T Consensus       174 ~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          174 ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence               233333202334567788998888999887432       4799999984 3   3344443334567888888865


Q ss_pred             CeEEEEe-cCCCceEEEeccCCCceEEEEEcCCCC--------ceeEEEecCCCeEEEEe-CCCCeEEEEecCCCceEEE
Q psy8875         602 GWMYWSD-WGQNAKIERAGMDGSHRNMVIVSDIKW--------PNGLTLDLVQRRLYWVD-AKLNEISSCDYNGGNRRLV  671 (734)
Q Consensus       602 g~LYwtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~--------P~glavD~~~~~LYw~D-~~~~~I~~~~~dG~~~~~i  671 (734)
                      . ||++. .....+|++.++++...+.++......        ...+++.+ +++||++- .+..+|+.+++++...+.+
T Consensus       254 ~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          254 S-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLA-NGLIAVVHGKGAAVLGILDPESGELVDA  331 (662)
T ss_dssp             C-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECT-TSCEEEEEBSSSCEEEEEETTTTEEEEC
T ss_pred             e-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeC-CCEEEEEEEcCccEEEEEECCCCcEEEe
Confidence            5 55554 332348999998665544443322111        24566643 44555543 3555788889887766554


Q ss_pred             EcCCCCCCCCeEE-EEECCEEEEEeCCC---CceEEEeccCCCce
Q psy8875         672 LYSPQTLSHPFSI-STFEDWLYWSDWQQ---KAIYKANKFTGDNL  712 (734)
Q Consensus       672 ~~~~~~~~~P~gl-~v~~~~lywtd~~~---~~v~~~~~~~G~~~  712 (734)
                      ...   .....++ +..++.++++-...   ..|++++..+|+..
T Consensus       332 ~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          332 AGP---WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             CSS---CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             cCC---CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            321   2223455 66777777764432   36888876566543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.48  E-value=4.5e-06  Score=93.29  Aligned_cols=234  Identities=11%  Similarity=0.077  Sum_probs=147.9

Q ss_pred             eeeeee--ccceEEeecCCCceEEEe--cCCcceEEEee-e-ccCCeEEEEE-----------------eCCCcEEEEec
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIV--NSTKSATAIDF-V-FRTGMIFWSD-----------------ISEKKIYKAPI  532 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~-d-~~~~~lyw~d-----------------~~~~~I~~~~l  532 (734)
                      +|++.+  ...|.+|+++......++  ++...|.++++ . +.+++||.+.                 ...+.+..++.
T Consensus       103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~  182 (595)
T 1fwx_A          103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA  182 (595)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred             EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence            455554  356999999987765543  45677999997 4 7899999985                 22345677777


Q ss_pred             CCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC--------------CeEE-----------------------EEe
Q psy8875         533 DEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK--------------NTIE-----------------------LAN  575 (734)
Q Consensus       533 ~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~--------------~~I~-----------------------~~~  575 (734)
                      +.......+ .-+ ..|.++++++.++.+|+|...+              ..|.                       +++
T Consensus       183 ~t~~v~~qI-~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID  260 (595)
T 1fwx_A          183 DKWEVAWQV-LVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  260 (595)
T ss_dssp             TTTEEEEEE-EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             CCCeEEEEE-EeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence            633222222 212 2799999999999999998664              2233                       333


Q ss_pred             CCC---Cc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------e-EEEEE-cCCCCceeEE
Q psy8875         576 FEG---TM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---------R-NMVIV-SDIKWPNGLT  640 (734)
Q Consensus       576 ldG---~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---------~-~~lv~-~~l~~P~gla  640 (734)
                      ...   +. ...|  .....|.|+++.|...++|.++.+ ...|.+++++-..         + .++.. ..-..|..++
T Consensus       261 ~~~~~~~~~~~~I--pvg~~PhGv~~sPDGk~v~V~~~~-s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~a  337 (595)
T 1fwx_A          261 GRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGKL-SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  337 (595)
T ss_dssp             CSGGGCCSSEEEE--EEESSCCCEEECTTSSEEEEECTT-SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEE
T ss_pred             CcccCCceeEEEE--ecCCCceEEEEcCCCCEEEEeCCC-CCeEEEEECcccccccccccCcccceEEEcCCCCCcceEE
Confidence            321   11 1111  112579999999999999999965 4788887776321         0 11211 1224699999


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCC-------c-eEEEEcCCCCCCCC------eEEEE--ECCEEEEEeCCC-Cce--
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGG-------N-RRLVLYSPQTLSHP------FSIST--FEDWLYWSDWQQ-KAI--  701 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~-------~-~~~i~~~~~~~~~P------~gl~v--~~~~lywtd~~~-~~v--  701 (734)
                      +|+.+ ++|.+-...+.|.+++++..       . ..++-.- ..-.+|      .|+++  ++.+||.++..+ .++  
T Consensus       338 F~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~ki-dV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          338 FDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKL-DVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             ECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEE-ECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             ECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEe-ecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            99766 99999998899999998751       1 2222111 111233      33444  688999999876 444  


Q ss_pred             ---------EEEeccCCCceEEEec
Q psy8875         702 ---------YKANKFTGDNLTAITG  717 (734)
Q Consensus       702 ---------~~~~~~~G~~~~~l~~  717 (734)
                               ..++. +|..++++..
T Consensus       416 ~gp~~~~~~ql~di-s~~~m~lv~d  439 (595)
T 1fwx_A          416 VGPLKPENDQLIDI-SGDKMVLVHD  439 (595)
T ss_dssp             CCSSCCEEEEEEEC-SSSSCEEEEE
T ss_pred             CCCCCCCcceEEEc-CCCcEEEEEE
Confidence                     34444 5555666643

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=98.46  E-value=6e-08  Score=86.06  Aligned_cols=74  Identities=30%  Similarity=0.718  Sum_probs=57.0

Q ss_pred             cccccccCCCCCcCccccC-CCcceeecCCCcEecCCCCccccccCcC---CCCCcccceeccCCceEEecCCCeeeCCC
Q psy8875         388 GVDECAKDNGGCLHKCVDL-PVGYMCECNEGYKLSSNRHTCIDIDECE---TPGSCSQICLNEKGGFKCECVAGYIKDPH  463 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~-~~~~~C~C~~G~~l~~~~~~C~~~~eC~---~~~~C~~~C~n~~g~~~C~C~~gy~~~~~  463 (734)
                      ++|||..  ..|.+.|+++ +++|+|.|++||.+...     ++++|.   ..++|.+.|++ .++|.|.|++||.+.. 
T Consensus         3 dideC~~--~pC~~~C~~~~~g~y~C~C~~Gy~g~~~-----~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~-   73 (118)
T 1dx5_I            3 PVDPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH-----EPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDD-   73 (118)
T ss_dssp             CCCGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT-----EEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEET-
T ss_pred             ccccCCC--CCCCCCCCCCCCCCEEeECCCCccccCC-----CCCccccccCCCCCCCcccC-CCCeEeECCCCccCCC-
Confidence            5789964  5688899999 99999999999988632     344443   25678889998 5899999999999865 


Q ss_pred             CCcccccc
Q psy8875         464 HPTQCKAA  471 (734)
Q Consensus       464 ~~t~C~~~  471 (734)
                      ++. |+.+
T Consensus        74 g~~-C~di   80 (118)
T 1dx5_I           74 GFI-CTDI   80 (118)
T ss_dssp             TTE-EEEC
T ss_pred             CCc-cccc
Confidence            333 7544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.45  E-value=8.7e-06  Score=89.77  Aligned_cols=200  Identities=13%  Similarity=0.105  Sum_probs=122.3

Q ss_pred             cceEEEeeecc---CCeEEEEEeCC------------CcEEEEecCCC-------CceEEEEe----CCCCCccceeeec
Q psy8875         503 KSATAIDFVFR---TGMIFWSDISE------------KKIYKAPIDEG-------SERTVVIE----EDKTIADGLAVDW  556 (734)
Q Consensus       503 ~~~~~i~~d~~---~~~lyw~d~~~------------~~I~~~~l~~g-------~~~~~~~~----~~~~~p~glAvD~  556 (734)
                      ....+|++++.   ++.||++-...            .+|.|+.+..+       ...++++.    ........|++++
T Consensus        69 ~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp  148 (463)
T 2wg3_C           69 RGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP  148 (463)
T ss_dssp             CSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT
T ss_pred             CcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC
Confidence            45788999974   67899875421            37888887532       11334432    1234455799996


Q ss_pred             cCCcEEEEeCC-----------------CCeEEEEeCCCCc-------------------eEEEEcCCCCCceeEEEeCC
Q psy8875         557 IYSHIYWTDAH-----------------KNTIELANFEGTM-------------------RKVLVRSYLDEPRSLALNPI  600 (734)
Q Consensus       557 ~~~~lY~td~~-----------------~~~I~~~~ldG~~-------------------~~~l~~~~l~~P~~iavD~~  600 (734)
                       .++||++--.                 .++|.|++.+|..                   +..|+...+.+|.+|++||.
T Consensus       149 -DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~  227 (463)
T 2wg3_C          149 -DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRH  227 (463)
T ss_dssp             -TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESS
T ss_pred             -CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCC
Confidence             5799998322                 4679999999941                   22355678999999999998


Q ss_pred             CC------eEEEEec-CC---CceEEEeccCCCc---eEEEEE-cCC--CCceeEEEec------CCCeEEEEeCCCCeE
Q psy8875         601 DG------WMYWSDW-GQ---NAKIERAGMDGSH---RNMVIV-SDI--KWPNGLTLDL------VQRRLYWVDAKLNEI  658 (734)
Q Consensus       601 ~g------~LYwtd~-~~---~~~I~~~~ldG~~---~~~lv~-~~l--~~P~glavD~------~~~~LYw~D~~~~~I  658 (734)
                      ++      +||.+|. +.   ...|..+.. |.+   ...++. ..-  ..|.|+++-.      ..+.+|+++.. ++|
T Consensus       228 tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i  305 (463)
T 2wg3_C          228 PTDININLTILCSDSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNF  305 (463)
T ss_dssp             CSSTTCSEEEEEECC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCE
T ss_pred             CCCcccceEEEecccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcE
Confidence            64      7888885 32   134555422 221   111221 111  3578888821      23468899986 789


Q ss_pred             EEEecCCCc---eEEEE-cC------CCCCCCCeEEEEE-CCEEEEEeC-------CCCceEEEe
Q psy8875         659 SSCDYNGGN---RRLVL-YS------PQTLSHPFSISTF-EDWLYWSDW-------QQKAIYKAN  705 (734)
Q Consensus       659 ~~~~~dG~~---~~~i~-~~------~~~~~~P~gl~v~-~~~lywtd~-------~~~~v~~~~  705 (734)
                      +++.++...   ...++ ..      ......|.+|++. .+.||++++       ..++|+|+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          306 LTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             EEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             EEEEeCCCCceeeEEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence            999886542   22222 11      1224568888884 689999997       467888885

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.44  E-value=0.0001  Score=79.12  Aligned_cols=197  Identities=10%  Similarity=-0.005  Sum_probs=113.8

Q ss_pred             cceEEeecCCCceEEEec-C-------CcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         483 HDIRKISLDHHEMTAIVN-S-------TKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~-~-------~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      ..|..+++........++ .       ...|.++++++..++||+++.. .+.|..++ ..+.....++.    .|..+.
T Consensus        97 ~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~----~~~~~~  171 (373)
T 2mad_H           97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS----SPTCYH  171 (373)
T ss_pred             CeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC----CCceEE
Confidence            346677765443322221 1       2457889999999999999865 57788888 65433222011    111111


Q ss_pred             e------------------------------------------------eccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875         554 V------------------------------------------------DWIYSHIYWTDAHKNTIELANFEGTMRKVLV  585 (734)
Q Consensus       554 v------------------------------------------------D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~  585 (734)
                      +                                                ....+.+||+. ..+.|.++++.+...+++.
T Consensus       172 ~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~~v~~  250 (373)
T 2mad_H          172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcceEee
Confidence            1                                                11123334433 2345666665443222211


Q ss_pred             c---------CCCCCcee---EEEeCCCCeEEEEecC--------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCC
Q psy8875         586 R---------SYLDEPRS---LALNPIDGWMYWSDWG--------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ  645 (734)
Q Consensus       586 ~---------~~l~~P~~---iavD~~~g~LYwtd~~--------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~  645 (734)
                      .         .....|.+   +++++..++||++...        ....|+++++.......-+. .-..|.+|++++.+
T Consensus       251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~~s~Dg  329 (373)
T 2mad_H          251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDG  329 (373)
T ss_pred             eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEEECCCC
Confidence            0         01123555   8999999999998631        12579998887544322222 22369999999888


Q ss_pred             C-eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC
Q psy8875         646 R-RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       646 ~-~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      + +||.+....+.|..+++........+.  .....|.+|.+.+
T Consensus       330 ~~~l~v~~~~~~~V~ViD~~t~~vv~~i~--~vG~~P~~~~~~~  371 (373)
T 2mad_H          330 GPDLYALSAGTEVLHIYDAGAGDQDQSTV--ELGSGPQVLSVMN  371 (373)
T ss_pred             CeEEEEEcCCCCeEEEEECCCCCEEeeec--CCCCCCcEEEEcc
Confidence            8 788887778999999987654433311  2345788887654

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=98.39  E-value=6.5e-08  Score=84.02  Aligned_cols=53  Identities=34%  Similarity=0.853  Sum_probs=7.2

Q ss_pred             CCCCCCCC-CCCCc-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         375 DCPLMQDE-DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|+.||.. ++..| ++|||.. +..|.+.|+|++++|+|.|++||.+..++++|+
T Consensus        53 ~C~~Gy~g~~g~~C~dideC~~-~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~~~C~  107 (107)
T 2w2n_E           53 LCPDGFQLVAQRRCEDIDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK  107 (107)
T ss_dssp             ECCTTCEEETTTEEEC----------------------------------------
T ss_pred             ECCCCccccCCCccccccccCC-CCCcCCeeecCCCCEEEECCCCceECCCCCccC
Confidence            45555543 22356 7999973 467889999999999999999999998888874

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.38  E-value=6.7e-08  Score=91.64  Aligned_cols=50  Identities=26%  Similarity=0.726  Sum_probs=42.4

Q ss_pred             CcceeecCCCcEecCCCCccc-cccCcCCCCCccc--ceecc-CCceEEecCCCeeeC
Q psy8875         408 VGYMCECNEGYKLSSNRHTCI-DIDECETPGSCSQ--ICLNE-KGGFKCECVAGYIKD  461 (734)
Q Consensus       408 ~~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~~--~C~n~-~g~~~C~C~~gy~~~  461 (734)
                      ++|+|.|++||.    +..|+ ++++|....+|++  +|+++ .++|+|.|++||.+.
T Consensus       112 ~~~~C~C~~G~~----G~~C~~~~~~C~~~~~C~~~g~C~~~~~~~~~C~C~~G~~G~  165 (169)
T 2vj2_A          112 EPWQCLCETNWG----GQLCDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSGP  165 (169)
T ss_dssp             STTCCEECTTEE----TTTTCEESCHHHHTCCCCTTCEEEECSTTCEEEECCTTCCST
T ss_pred             CCCEEeCCCCCC----CCcccCCCCCCCCCCCCCCCCEEcCCCCCCcEeECCCCCcCc
Confidence            579999999995    67897 8899976567864  89997 899999999999874

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=98.38  E-value=1.6e-07  Score=78.39  Aligned_cols=55  Identities=33%  Similarity=0.896  Sum_probs=43.4

Q ss_pred             CCCCCCCC--CCCCc-cccccccCCCCCcCccccCCCcceeec--CCCcEecCCCCcccccc
Q psy8875         375 DCPLMQDE--DPTKC-GVDECAKDNGGCLHKCVDLPVGYMCEC--NEGYKLSSNRHTCIDID  431 (734)
Q Consensus       375 ~C~~g~d~--~~~~C-~~~eC~~~~~~C~~~C~~~~~~~~C~C--~~G~~l~~~~~~C~~~~  431 (734)
                      .|+.||..  .+..| +++||..  ..|.+.|+|++++|+|.|  .+||.+..+++.|++|+
T Consensus        28 ~C~~G~~~~~~g~~C~dideC~~--~~C~~~C~n~~g~y~C~C~g~~G~~~~~~~~~C~di~   87 (87)
T 1z6c_A           28 ECPEGYRYNLKSKSCEDIDECSE--NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVVS   87 (87)
T ss_dssp             SSSTTCEEETTTTEEECCCHHHH--SCCSSEECCCSSSCCEECCSSSCCBCCTTSSSCBCCC
T ss_pred             ECCCCceECCCCCcCCCcCeeCC--CCCCCEEEccCCCEEEECCCCcCCcccCCCCcceECc
Confidence            56666642  23457 7999975  468899999999999999  68999988889998774

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=98.38  E-value=8.2e-08  Score=92.32  Aligned_cols=55  Identities=29%  Similarity=0.656  Sum_probs=38.5

Q ss_pred             CCCCCCCCCCCCc--cc-cccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccccc
Q psy8875         375 DCPLMQDEDPTKC--GV-DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDID  431 (734)
Q Consensus       375 ~C~~g~d~~~~~C--~~-~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~  431 (734)
                      .|+.||.+.  .|  ++ ++|...++.|.+.|++++++|+|.|++||.|..++++|.+++
T Consensus        66 ~C~~Gf~G~--~Ce~~i~deC~~~~~~C~~~C~n~~gsy~C~C~~Gy~l~~dG~~C~~~~  123 (195)
T 1nfu_B           66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG  123 (195)
T ss_dssp             -----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESS
T ss_pred             eCCCCceec--cccccccccccCCCCCCCCEeECCCCCeEEECCCCceeCCCCCccccCC
Confidence            566666543  46  25 789877788999999999999999999999999999998764

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=98.37  E-value=2.7e-07  Score=77.57  Aligned_cols=72  Identities=18%  Similarity=0.406  Sum_probs=57.9

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc--cccCcCCCCCccc--ceeccC--C
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI--DIDECETPGSCSQ--ICLNEK--G  448 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~--~~~eC~~~~~C~~--~C~n~~--g  448 (734)
                      .|++||.+.  .|++++|...      .|++..++|+|.|++||.      .|+  ++++|.. .+|.+  +|+++.  +
T Consensus         5 ~C~~g~~g~--~c~~~~c~~~------pC~n~~~~y~C~C~~G~~------~C~~~~~~~C~~-~pC~ngg~C~~~~~~~   69 (91)
T 1tpg_A            5 ICRDEKTQM--IYQQHQSWLR------PVLRSNRVEYCWCNSGRA------QCHSVPVKSCSE-PRCFNGGTCQQALYFS   69 (91)
T ss_dssp             CCBCSSSCC--BCCSSCEEEE------ECSSSSCEEEEECSSSCC------BCCEECEEECSS-CCSCTTCEEEEESSSS
T ss_pred             ECCCCCcCC--eECCCcccCC------ccccCCCCcEeECCCCCc------ccccCcCCcccC-CCCCCCCEeecCCCCC
Confidence            678888664  4688888643      377889999999999994      785  7899974 46854  799988  9


Q ss_pred             ceEEecCCCeeeC
Q psy8875         449 GFKCECVAGYIKD  461 (734)
Q Consensus       449 ~~~C~C~~gy~~~  461 (734)
                      +|.|.|++||.+.
T Consensus        70 ~~~C~C~~G~~G~   82 (91)
T 1tpg_A           70 DFVCQCPEGFAGK   82 (91)
T ss_dssp             CEEEECCTTCBSS
T ss_pred             CeEeECCCCCcCC
Confidence            9999999999864

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.37  E-value=7.7e-08  Score=92.46  Aligned_cols=68  Identities=29%  Similarity=0.619  Sum_probs=48.8

Q ss_pred             ccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcC--CCCCC-CcccccCcCCCCceEeCccccCCCCCCCCCCCC
Q psy8875          90 QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEK--SCKNR-TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE  166 (734)
Q Consensus        90 ~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~--~C~~~-~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde  166 (734)
                      ....|++.+|+|.+.+|+|||..|+|||..||.|||||.  +|... ++...+|.+     .      ..+..|.++++|
T Consensus        50 ~~~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~~g-----~------~~~~~C~~~~pe  118 (217)
T 2gtl_M           50 EEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTG-----L------ATWTSCEDLNPD  118 (217)
T ss_dssp             SCCCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEEEE-----E------EEESSSCSCCSE
T ss_pred             CCCCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCCcccCCccccc-----c------cCcccCCCCCCC
Confidence            345789999999752379999999999999999999998  78554 333333322     1      233468777776


Q ss_pred             CC
Q psy8875         167 DP  168 (734)
Q Consensus       167 ~~  168 (734)
                      .-
T Consensus       119 ~~  120 (217)
T 2gtl_M          119 HA  120 (217)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=98.37  E-value=9.2e-08  Score=86.89  Aligned_cols=56  Identities=29%  Similarity=0.646  Sum_probs=38.7

Q ss_pred             CCCCCCCCCCCCc-c-c-cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875         375 DCPLMQDEDPTKC-G-V-DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE  432 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~-~-~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e  432 (734)
                      .|+.||.+.  .| + + ++|...++.|.+.|++++++|+|.|++||.|..++++|.++++
T Consensus        66 ~C~~G~~G~--~C~~~i~d~C~~~~~~C~~~C~~~~g~y~C~C~~Gy~l~~~g~~C~~~~~  124 (134)
T 2vh0_B           66 TCLEGFEGK--NCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGP  124 (134)
T ss_dssp             -----------------CCGGGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred             eCCCCccCC--ccccCCCCccccCCCCCCCEeECCCCCEEEECCCCcEECCCCCccCcCCC
Confidence            566666543  45 2 5 7898767789999999999999999999999999999988754

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.36  E-value=2.1e-05  Score=85.07  Aligned_cols=202  Identities=10%  Similarity=0.020  Sum_probs=130.0

Q ss_pred             ccCCeEEEEEeCCCcEEEEecCCC--Cc--eEEEE------eCCCCCccceeeeccCCcEEEEeCCC------CeEEEEe
Q psy8875         512 FRTGMIFWSDISEKKIYKAPIDEG--SE--RTVVI------EEDKTIADGLAVDWIYSHIYWTDAHK------NTIELAN  575 (734)
Q Consensus       512 ~~~~~lyw~d~~~~~I~~~~l~~g--~~--~~~~~------~~~~~~p~glAvD~~~~~lY~td~~~------~~I~~~~  575 (734)
                      ...++||+....+.+|+.+++...  ..  .+++-      ..+...|.++++-+.+  ||++..+.      +.|.+.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            557889999999999999987522  11  22220      1244578888887554  99987664      6899988


Q ss_pred             CCCCceEEEEc-CCC--CCceeEEEeCCCCeEEEEecC-----------------CCceEEEeccCCCceEEEEEcC--C
Q psy8875         576 FEGTMRKVLVR-SYL--DEPRSLALNPIDGWMYWSDWG-----------------QNAKIERAGMDGSHRNMVIVSD--I  633 (734)
Q Consensus       576 ldG~~~~~l~~-~~l--~~P~~iavD~~~g~LYwtd~~-----------------~~~~I~~~~ldG~~~~~lv~~~--l  633 (734)
                      .......--+. ...  ..+.++.+.|..+.||.++|+                 ...+|...+++.......+...  -
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            87544333222 212  223346668888999999986                 2468888888753222222221  1


Q ss_pred             CCceeEEE--ecCCCeEEEEeC-----CCCeEEEEecCCCce---EEE-EcC---CCC-----------CCCCeEEEE--
Q psy8875         634 KWPNGLTL--DLVQRRLYWVDA-----KLNEISSCDYNGGNR---RLV-LYS---PQT-----------LSHPFSIST--  686 (734)
Q Consensus       634 ~~P~glav--D~~~~~LYw~D~-----~~~~I~~~~~dG~~~---~~i-~~~---~~~-----------~~~P~gl~v--  686 (734)
                      ..|..|++  ++.+.++|++..     ..+.|+++.+++...   ++| +..   ...           ...|.+|.+  
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            35777766  888999999988     778898887775321   111 110   000           145777877  


Q ss_pred             ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         687 FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       687 ~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++.+||+++|+.+.|..++..+....+++
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv  359 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLT  359 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            67899999999999988876544434444

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.35  E-value=3.3e-05  Score=82.55  Aligned_cols=195  Identities=7%  Similarity=-0.059  Sum_probs=119.8

Q ss_pred             CCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeC---------CCCeEEEEeCCCCc
Q psy8875         514 TGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDA---------HKNTIELANFEGTM  580 (734)
Q Consensus       514 ~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~---------~~~~I~~~~ldG~~  580 (734)
                      ..++|+++...+    .|..++++.+.....+ ..+ ..| +|++.+.++.||+++.         ..+.|.++++....
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i-~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHS-LGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEE-EEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEE-eCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            467899988766    7778887744333333 223 358 9999999999999984         35789999986544


Q ss_pred             -eEEEEcC------CCCCceeEEEeCCCCeEEEEecCCCceEEE--eccCCCceE-------------------------
Q psy8875         581 -RKVLVRS------YLDEPRSLALNPIDGWMYWSDWGQNAKIER--AGMDGSHRN-------------------------  626 (734)
Q Consensus       581 -~~~l~~~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~--~~ldG~~~~-------------------------  626 (734)
                       ...|...      ....|.+|+++|..++||+++.+....|.+  +++.. .++                         
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~  186 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPAS  186 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTS
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCC
Confidence             3333222      135799999999999999998653345666  44422 111                         


Q ss_pred             -EEEEcCC-------------------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-------CCC
Q psy8875         627 -MVIVSDI-------------------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-------TLS  679 (734)
Q Consensus       627 -~lv~~~l-------------------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-------~~~  679 (734)
                       +++...-                   ..|.  + ....+++||+..  +.|..+++.+...+++..-..       ...
T Consensus       187 ~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~  261 (368)
T 1mda_H          187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNF  261 (368)
T ss_dssp             CEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTE
T ss_pred             EEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccccccccc
Confidence             0111000                   1122  2 334567777776  788888887654444321100       011


Q ss_pred             CCeE---EEE--ECCEEEEEeC---C-----CCceEEEeccCCCceEEEec
Q psy8875         680 HPFS---IST--FEDWLYWSDW---Q-----QKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       680 ~P~g---l~v--~~~~lywtd~---~-----~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .|.+   +++  .+++||++..   +     .+.+..++..+++.+..|..
T Consensus       262 ~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v  312 (368)
T 1mda_H          262 RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN  312 (368)
T ss_dssp             EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred             ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence            2333   444  6789999875   3     34566888888877666643

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=98.35  E-value=1.8e-07  Score=82.47  Aligned_cols=44  Identities=34%  Similarity=0.705  Sum_probs=38.7

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccC
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDE  432 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~e  432 (734)
                      +++|...+++|.+.|++++++|+|.|++||.+..++++|+++.+
T Consensus        54 ~~~C~~~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~~C~~~~~   97 (114)
T 1aut_L           54 FLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK   97 (114)
T ss_dssp             SSSSSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred             CCcCcCCCCCCCCEeECCCCCEEeECCCCeeECCCCCccCcCcc
Confidence            35788777889999999999999999999999999999987654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.35  E-value=5.6e-05  Score=80.73  Aligned_cols=201  Identities=13%  Similarity=0.055  Sum_probs=112.9

Q ss_pred             cceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCC-----CCc
Q psy8875         483 HDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDK-----TIA  549 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~-----~~p  549 (734)
                      ..|..+++........+.       ....|.+|++++..++||+++.. .+.|..+++..+.....++....     ..|
T Consensus        81 ~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p  160 (361)
T 2oiz_A           81 DVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQP  160 (361)
T ss_dssp             EEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECT
T ss_pred             CEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcC
Confidence            347777766544332222       12467889999989999999876 67888888764422211011000     011


Q ss_pred             cc----eeeeccCCcEEEEeC-------------------------------------CCCeEEEEeCCCCceEEEEc--
Q psy8875         550 DG----LAVDWIYSHIYWTDA-------------------------------------HKNTIELANFEGTMRKVLVR--  586 (734)
Q Consensus       550 ~g----lAvD~~~~~lY~td~-------------------------------------~~~~I~~~~ldG~~~~~l~~--  586 (734)
                      .+    +++...+..+||+..                                     ..++|.++++.+....++..  
T Consensus       161 ~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~  240 (361)
T 2oiz_A          161 NRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWS  240 (361)
T ss_dssp             TSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEE
T ss_pred             CCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceeccccc
Confidence            11    333322222232221                                     12345555554332222110  


Q ss_pred             -------CCCCCce---eEEEeCCCCeEEEEec--C-------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         587 -------SYLDEPR---SLALNPIDGWMYWSDW--G-------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       587 -------~~l~~P~---~iavD~~~g~LYwtd~--~-------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                             .....|.   .+++++..++||++..  +       ....|+++++........+...-  |.+|++++.+++
T Consensus       241 ~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~  318 (361)
T 2oiz_A          241 LLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNL  318 (361)
T ss_dssp             SCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTE
T ss_pred             ccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCE
Confidence                   0011233   4999999999999863  1       12478888876543332233222  999999999999


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875         648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF  687 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~  687 (734)
                      ||.+..  +.|..+++.....+++..-......|.+|++.
T Consensus       319 l~v~n~--~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~  356 (361)
T 2oiz_A          319 MLTLDG--GNVNVYDISQPEPKLLRTIEGAAEASLQVQFH  356 (361)
T ss_dssp             EEEECS--SCEEEEECSSSSCEEEEEETTSCSSEEEEEEC
T ss_pred             EEEeCC--CeEEEEECCCCcceeeEEeccCCCCcEEEEec
Confidence            998885  89999987765223333211335689988874

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=98.34  E-value=6.6e-08  Score=89.55  Aligned_cols=54  Identities=28%  Similarity=0.663  Sum_probs=46.0

Q ss_pred             CCCCCCCC-CCCCc-cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccc
Q psy8875         375 DCPLMQDE-DPTKC-GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       375 ~C~~g~d~-~~~~C-~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|+.||.. .+..| ++|||...++.|.+ .|+|++++|+|.|++||.+..++++|+
T Consensus        91 ~C~~Gy~~~~g~~C~dideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A           91 ICGKGYSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             TTCTTEEEEETTEEEECCHHHHSTTCSSSSEEEEETTEEEEECCTTCCBCTTSSCBC
T ss_pred             cCCCccccCCCCccCccccccCCCCCCCCCEEECCCCCEEeeCCCCCccCCCCCeeC
Confidence            79999952 23467 89999987778875 899999999999999999998998884

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.33  E-value=1.2e-05  Score=81.56  Aligned_cols=192  Identities=13%  Similarity=0.098  Sum_probs=126.1

Q ss_pred             eeeeeeccceEEeecCC-CceEEEecCC--cceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         476 SLLFARKHDIRKISLDH-HEMTAIVNST--KSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~-~~~~~l~~~~--~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      +|++.....|+.+++.+ .....+....  ..+..++|.+....|+++...   ...|+.+++.++. ...+.  ....+
T Consensus        55 ~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~  131 (297)
T 2ojh_A           55 YLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMT--KNLPS  131 (297)
T ss_dssp             EEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECC--SSSSE
T ss_pred             EEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEee--cCCCc
Confidence            45666677888888887 6665554332  455678898888888887643   4678888887443 22222  22336


Q ss_pred             cceeeeccCCcEEEEeCCCC--eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceE
Q psy8875         550 DGLAVDWIYSHIYWTDAHKN--TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRN  626 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~--~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~  626 (734)
                      ..+++.+.++.|+++....+  +|+.+++.+.....+. .....+..++++|...+|+++.. ....+|+..++++....
T Consensus       132 ~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          132 YWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE
T ss_pred             cceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE
Confidence            67788877888887665445  5666666665544433 33456789999998877887753 33468888887776554


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCC----------CCeEEEEecCCCceEEEE
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAK----------LNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~----------~~~I~~~~~dG~~~~~i~  672 (734)
                      .+. ........+++++.+.+|+++...          ...|+.+++++...+.+.
T Consensus       211 ~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          211 RIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             ECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             EEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            432 222345678888888888877542          256899998877655544

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=98.31  E-value=4.6e-07  Score=83.35  Aligned_cols=50  Identities=24%  Similarity=0.523  Sum_probs=36.4

Q ss_pred             CCCCCCCCCCCCccccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         375 DCPLMQDEDPTKCGVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|+.||.+..+.-++++|...+....+.|++++++|+|.|++||.    +..|.
T Consensus        83 ~C~~G~~G~~C~~~i~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~----G~~c~  132 (143)
T 4d90_A           83 KCPRGFNGIHCQHNINECEVEPCKNGGICTDLVANYSCECPGEFM----GRNCQ  132 (143)
T ss_dssp             ECCTTEESTTSCEECCTTTTCCSCTTCEEEEETTEEEEECCTTCB----STTSC
T ss_pred             ECcCCCcCCCcccCCCcCCCCCCCCCCEeECCCCCeEeECCCCCc----cCCce
Confidence            677777654322268889866555556999999999999999994    55554

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=98.30  E-value=3.3e-07  Score=86.88  Aligned_cols=148  Identities=21%  Similarity=0.472  Sum_probs=82.4

Q ss_pred             CCccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCC-CCCCCCceec--CCC
Q psy8875         199 PKISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH-ETCRSDEFTC--ANG  275 (734)
Q Consensus       199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~-~~C~~~~~~C--~~g  275 (734)
                      ..+.|.|++||.|..++..|...  ..|.  +.++|     +. ..+|.    |..|+.+..|+ ..|...   |  .+|
T Consensus        15 ~~~~c~C~~g~~G~~C~~~C~~~--~~c~--~~g~C-----~~-~g~C~----C~~G~~G~~C~~~~C~~~---C~~~~g   77 (169)
T 2vj2_A           15 GRSAVTCDDYYYGFGCNKFCRPR--DDFF--GHYAC-----DQ-NGNKT----CMEGWMGPECNRAICRQG---CSPKHG   77 (169)
T ss_dssp             ------CCTTEETTTTCEECCCE--EETT--EEEEE-----CS-SCCEE----ECTTEESTTSCEECCCTT---CCTTTE
T ss_pred             cCeeeeCCCcCcCCCcccccCCC--CCcC--CCCEe-----CC-CCeeE----CCCCCcCCCCCCCCCCCC---CCCCCc
Confidence            46789999999998877644321  1232  23444     32 23343    89999988886 456542   5  566


Q ss_pred             CeecCCcccCCCCCCCCCCCCCCCCCCCCCCCceecCCCCccccccccccCCCCCCCCCCCCCCCCCCCccccccccccC
Q psy8875         276 NCIQRIWLCDGDDDCKDGSDEKSCQPVKCTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNATPMNSSVRIEGAVAFIP  355 (734)
Q Consensus       276 ~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~~~c~~~~~~~C~~~~~~  355 (734)
                      .|+. .+.|    .|..|+.+..|+.  |.... .|.+ ++|+                          ..|.|      
T Consensus        78 ~C~~-~~~C----~C~~G~~G~~C~~--C~~~~-~C~~-g~C~--------------------------~~~~C------  116 (169)
T 2vj2_A           78 SCKL-PGDC----RCQYGWQGLYCDK--CIPHP-GCVH-GICN--------------------------EPWQC------  116 (169)
T ss_dssp             ECSS-TTCC----EECTTEESSSSCE--ECCCT-TCSS-EECS--------------------------STTCC------
T ss_pred             ccCC-CCee----ECCCCCCCCCccc--CCCCC-CCCC-CCcC--------------------------CCCEE------
Confidence            7776 4666    7888888777752  21110 1221 1111                          12344      


Q ss_pred             CCCCcccccccccccCCCCCCCCCCCCCCCCccccccccCCCCCc--CccccC-CCcceeecCCCcEecCCCCccc
Q psy8875         356 PGFAMAMKIVRTAVCDKHPDCPLMQDEDPTKCGVDECAKDNGGCL--HKCVDL-PVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       356 ~~~~~~~C~~~~~~C~~~~~C~~g~d~~~~~C~~~eC~~~~~~C~--~~C~~~-~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                                         .|++||.+....-++++|.. ...|.  ..|+++ +++|+|.|++||    .+..|+
T Consensus       117 -------------------~C~~G~~G~~C~~~~~~C~~-~~~C~~~g~C~~~~~~~~~C~C~~G~----~G~~Ce  168 (169)
T 2vj2_A          117 -------------------LCETNWGGQLCDKDLNYCGT-HQPCLNGGTCSNTGPDKYQCSCPEGY----SGPNCE  168 (169)
T ss_dssp             -------------------EECTTEETTTTCEESCHHHH-TCCCCTTCEEEECSTTCEEEECCTTC----CSTTSC
T ss_pred             -------------------eCCCCCCCCcccCCCCCCCC-CCCCCCCCEEcCCCCCCcEeECCCCC----cCcCcC
Confidence                               45555554321114677764 23554  479997 899999999999    455553

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.29  E-value=6.5e-05  Score=80.21  Aligned_cols=226  Identities=11%  Similarity=-0.012  Sum_probs=131.5

Q ss_pred             ceEEeecCCCceEEEecCCcceE-EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc--ceeeeccCCc
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSAT-AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD--GLAVDWIYSH  560 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~-~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~--glAvD~~~~~  560 (734)
                      .|+.+++.+.....+........ +++|.+...+|+++.. ...|+++++.++..+. +.........  ..++++....
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~dg~~  138 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-GRNLMRVDLATLEENV-VYQVPAEWVGYGTWVANSDCTK  138 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-TTEEEEEETTTCCEEE-EEECCTTEEEEEEEEECTTSSE
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-CCeEEEEECCCCccee-eeechhhcccccceeECCCCCe
Confidence            38888888877766655433332 5678888888998874 4679999998654433 3321111111  1223434444


Q ss_pred             EEEEe---------------------CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC-CCCeEEEEecCC----Cce
Q psy8875         561 IYWTD---------------------AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQ----NAK  614 (734)
Q Consensus       561 lY~td---------------------~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~----~~~  614 (734)
                      |+...                     .....|++.++.+...+.+.. .......+++.| ...+|.++..+.    ..+
T Consensus       139 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~  217 (388)
T 3pe7_A          139 LVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ-ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDAR  217 (388)
T ss_dssp             EEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCTTTSSCS
T ss_pred             eccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec-CCccccccEECCCCCCEEEEEEecCCCCCcce
Confidence            43221                     123678899988766665553 234567899999 666776665332    358


Q ss_pred             EEEeccCCCceEEEEEcCC-CCceeEEEecCCCeEEEEe-C-CCC--eEEEEecCCCceEEEEcCCCC-----CCCCeEE
Q psy8875         615 IERAGMDGSHRNMVIVSDI-KWPNGLTLDLVQRRLYWVD-A-KLN--EISSCDYNGGNRRLVLYSPQT-----LSHPFSI  684 (734)
Q Consensus       615 I~~~~ldG~~~~~lv~~~l-~~P~glavD~~~~~LYw~D-~-~~~--~I~~~~~dG~~~~~i~~~~~~-----~~~P~gl  684 (734)
                      |+..+++|...+.+..... .....+++.+.+.+|+++. . ...  .|+.+++.+...+.+......     ......+
T Consensus       218 l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~  297 (388)
T 3pe7_A          218 MWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLM  297 (388)
T ss_dssp             EEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEE
T ss_pred             EEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeE
Confidence            9999998877665543221 1234578888888786653 2 222  399999988776666432210     0111234


Q ss_pred             EEECCEEEEEe--------CCCCceEEEeccCCCce
Q psy8875         685 STFEDWLYWSD--------WQQKAIYKANKFTGDNL  712 (734)
Q Consensus       685 ~v~~~~lywtd--------~~~~~v~~~~~~~G~~~  712 (734)
                      +-++.+|+++-        .+...|+.++..+|+..
T Consensus       298 spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (388)
T 3pe7_A          298 VGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH  333 (388)
T ss_dssp             EEEECCC------------CCCCEEEEEETTTTEEE
T ss_pred             ccCCCcceeEeeeccccccCCCCEEEEEeccCCceE
Confidence            44566666543        44557888877665543

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=98.29  E-value=2.1e-09  Score=107.36  Aligned_cols=175  Identities=11%  Similarity=-0.023  Sum_probs=118.6

Q ss_pred             eecCCC-CeecC--CcccCCCCCCCCCCCCCCCCCC--C------CCCCceecCCCCccccccccccCCCCCCCCCCCCC
Q psy8875         270 FTCANG-NCIQR--IWLCDGDDDCKDGSDEKSCQPV--K------CTAGQFTCQNLTACIPDKWVCDGDTVEKDSTCPNA  338 (734)
Q Consensus       270 ~~C~~g-~Ci~~--~~~Cdg~~dC~dgsDe~~C~~~--~------C~~~~~~C~~~~~Ci~~~~~Cdg~~dC~d~~C~~~  338 (734)
                      ..|.+| +|++.  +|.|    +|+.|+.+.+|+..  .      |.+  -+|+++++|+. +..|....+|.+.+|.+.
T Consensus        38 ~~c~ngG~C~~g~~~y~C----~Cp~Gf~G~~Ce~ni~ec~~~~~c~s--~pC~nggtc~~-G~~c~~~~eC~s~pC~ng  110 (267)
T 4fbr_A           38 IKSDDGGKTLKGTMTYNG----EGPIGFRGTLSSANNYTVENQWGGTS--APWQPGGVWVL-GARDKQNIVAVSIKSNDG  110 (267)
T ss_dssp             EECSSTTSEEEEEEEETT----SCCEEEEEEECSTTEEEEEEESSSTT--SCEEEEEEEEC-CCCSSCCEEEEEEECSST
T ss_pred             CCcCCCCeecCCCCCeEE----eCCCCcccccccccccccccccCcCC--CcccCCCeeec-cCccccccccCCCCCCCC
Confidence            467777 99876  8999    99999999999742  2      333  36777777754 567887888888889888


Q ss_pred             CCCC-CCccccccccccCCCCCcccccccccccCCCC-----CCCCC---CCCCCCCcccc-ccccCCCCCcCccccCCC
Q psy8875         339 TPMN-SSVRIEGAVAFIPPGFAMAMKIVRTAVCDKHP-----DCPLM---QDEDPTKCGVD-ECAKDNGGCLHKCVDLPV  408 (734)
Q Consensus       339 ~~c~-~~~~~~C~~~~~~~~~~~~~C~~~~~~C~~~~-----~C~~g---~d~~~~~C~~~-eC~~~~~~C~~~C~~~~~  408 (734)
                      .+|. ...+|.|   .|++||++..|......|....     .|..+   +++.  .|+.+ +|...+..-..+|++...
T Consensus       111 G~C~~~~~sy~C---~C~~Gf~G~~Ce~~~d~C~n~~~c~s~pC~ngg~c~~G~--~c~~~i~c~~~~c~ngg~C~dg~~  185 (267)
T 4fbr_A          111 GKTLTGTTTYNG---EGPIGFKSEVTDGDTYSVENQWGGSAAPWHSGGVWVLGT--RGKQNVINVDAKSNDGGKTLSGTM  185 (267)
T ss_dssp             TSEEEEEEEETT---SCCEEEEEEECCCCEEEEEEECSSTTSCCEEEEEEECCS--STTSCEEEEEEECSSTTSEEEEEE
T ss_pred             CEEecCCccEEe---eCCCCccccCCCCCcccccccCCcCCccccCCcceeccc--ccccccccCCCCCCCCCEeeCCCC
Confidence            8884 5678999   8999999988887666543222     22222   2222  34322 333333333448999999


Q ss_pred             cceeecCCCcEecCCCCccc-cccCcCCCCCcccceeccCCceEEecCCCeee
Q psy8875         409 GYMCECNEGYKLSSNRHTCI-DIDECETPGSCSQICLNEKGGFKCECVAGYIK  460 (734)
Q Consensus       409 ~~~C~C~~G~~l~~~~~~C~-~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~  460 (734)
                      +|+|.|++||+    ++.|. +++||+.+..|...+-+..+.+.+.|+.++..
T Consensus       186 ~y~C~Cp~Gf~----G~~c~~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~  234 (267)
T 4fbr_A          186 TYNGEGPIGFR----GTLTSPDTYTVENQWGGSTAPWNPGGFWMIGARNGQNV  234 (267)
T ss_dssp             EETTSCCEEEE----EEEEETTEEEEEEECSCTTSCCEEEEEEECCCCTTCCE
T ss_pred             CeEEeCCCCcc----ccccccccceeccCCCccCCcccCCCeEEEecCCCCcc
Confidence            99999999995    45775 46777655556554444456677777777644

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=98.29  E-value=6.1e-07  Score=94.12  Aligned_cols=152  Identities=25%  Similarity=0.623  Sum_probs=65.1

Q ss_pred             ecCC-CceecCcCccCCCCCCCCCCcccccccCcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCccccc
Q psy8875          61 RCTG-GMCIPSTWVCDGQNDCPDGVDEKKCQKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQASE  139 (734)
Q Consensus        61 ~C~~-g~Ci~~~~~cdg~~dC~dg~de~~C~~~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~~  139 (734)
                      .|.+ |.|+.     .+...|.+|+.+..|+...|.+   .|.++ |.|+.     .+...|..|+.+..|....|.   
T Consensus       154 ~C~~~G~C~~-----~~~C~C~~G~~G~~C~~~~C~~---~C~~~-G~C~~-----~~~C~C~~G~~G~~C~~~~C~---  216 (324)
T 2ygq_A          154 GCRNGGFCNE-----RRICECPDGFHGPHCEKALCTP---RCMNG-GLCVT-----PGFCICPPGFYGVNCDKANCS---  216 (324)
T ss_dssp             CCCSSCEECT-----TSCEECCTTEESSSSCEESSSS---CCCTT-CEECS-----SCCEECCTTCBTTTTCBCCCS---
T ss_pred             CCCCCCEECC-----CCeEECCCCCcCCCCCCCCCCC---CCCCC-CEEcC-----CCEEeCCCCccCCCcccCcCC---
Confidence            3664 68886     2456799999999998777864   68876 89986     356689999999999776775   


Q ss_pred             CcCCC-CceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCcccc
Q psy8875         140 FRCGN-NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC  218 (734)
Q Consensus       140 f~C~~-g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~  218 (734)
                      -.|.+ |+|+..     +...|..|+.+..        |+.  ..|..+|.+.+.|..   .++|.|++||.|..++.. 
T Consensus       217 ~~C~~~G~C~~~-----~~C~C~~G~~G~~--------C~~--~~C~~~C~~~g~C~~---~~~C~C~~G~~G~~C~~~-  277 (324)
T 2ygq_A          217 TTCFNGGTCFYP-----GKCICPPGLEGEQ--------CEI--SKCPQPCRNGGKCIG---KSKCKCSKGYQGDLCSKP-  277 (324)
T ss_dssp             SCCCSSCCBSCS-----SCBCCCTTCCTTT--------TC----------------------------------------
T ss_pred             CCCCCCCeeCCC-----CeeeCCCCccCCC--------CCc--CcCCCcCCCCCEECC---CCEEECCCCCcCCCCcCC-
Confidence            35765 688762     4556888988766        532  345667888877763   578999999999877632 


Q ss_pred             ccCCCCCCCCCCceee-CCCceecCcCCCCCCCCCCCCCCCCCCCC
Q psy8875         219 AEAGSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKCHE  263 (734)
Q Consensus       219 ~~~~~~~C~~~~~~~C-~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~  263 (734)
                            .|.    -.| .+|+|+. .++|.    |..|+.+..|+.
T Consensus       278 ------~C~----~~C~~~g~C~~-~~~C~----C~~G~~G~~C~~  308 (324)
T 2ygq_A          278 ------VCE----PGCGAHGTCHE-PNKCQ----CQEGWHGRHCNK  308 (324)
T ss_dssp             ----------------------------------------------
T ss_pred             ------CCC----CCCCCCCEECC-CCEeE----CCCCCcCCCCCC
Confidence                  232    124 4678875 56777    999999998864

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.28  E-value=5.8e-05  Score=82.22  Aligned_cols=184  Identities=7%  Similarity=0.031  Sum_probs=127.7

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC--CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE--KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~--~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+..++.+.....+......+.+++|.+....|+++....  ..|+.+++.++.. ..+ .........+++.+.++.|
T Consensus       204 ~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l-~~~~~~~~~~~~spdg~~l  281 (415)
T 2hqs_A          204 ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQV-TDGRSNNTEPTWFPDSQNL  281 (415)
T ss_dssp             EEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEC-CCCSSCEEEEEECTTSSEE
T ss_pred             EEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeC-cCCCCcccceEECCCCCEE
Confidence            67888887766666655555678999999888888876543  4599999875433 222 2233456678888777878


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...  ..+|++.++++...+.+. ........+++.|...+|+++.... ...|+..++++...+.+.. . .....
T Consensus       282 ~~~s~~~g~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~-~~~~~  358 (415)
T 2hqs_A          282 AFTSDQAGRPQVYKVNINGGAPQRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-T-FLDET  358 (415)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-S-SSCEE
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-C-CCcCC
Confidence            887653  348999998876654433 2334567899999888888886432 3589999998766544332 2 36788


Q ss_pred             EEEecCCCeEEEEeCCCC--eEEEEecCCCceEEEE
Q psy8875         639 LTLDLVQRRLYWVDAKLN--EISSCDYNGGNRRLVL  672 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~i~  672 (734)
                      +++.+.+..|+++....+  .|+.++++|...+.+.
T Consensus       359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             eEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            999888888888764433  7999999887766553

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=98.27  E-value=3.6e-07  Score=75.22  Aligned_cols=51  Identities=29%  Similarity=0.748  Sum_probs=38.2

Q ss_pred             CCCCCCCCCCCCc-cccccccCCCCCc-CccccCCCcceeecCCCcEecCCCCcc
Q psy8875         375 DCPLMQDEDPTKC-GVDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       375 ~C~~g~d~~~~~C-~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      .|+.||...+..| +++||.. ...|. +.|+|++++|+|.|++||.+..+ ++|
T Consensus        29 ~C~~Gy~~~g~~C~dideC~~-~~~C~~~~C~n~~g~y~C~C~~G~~g~~~-~~C   81 (82)
T 1emn_A           29 ECPFGYILAGNECVDTDECSV-GNPCGNGTCKNVIGGFECTCEEGFEPGPM-MTC   81 (82)
T ss_dssp             ECCTTEEEETTEEEECCGGGT-CCTTSSSCEEECSSSEEECCSSSSCCCSS-SCC
T ss_pred             ECCCCeECCCCccCCcccccC-CCCCCCCEeECCCCCEEeECCCCeEeCCC-Ccc
Confidence            5666665333457 7899974 34564 58999999999999999998766 665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.25  E-value=9.2e-05  Score=78.73  Aligned_cols=151  Identities=9%  Similarity=0.146  Sum_probs=105.5

Q ss_pred             ceEEEeee-c--c----CCeEEEEEeCCCcEEEEecCCCCceEEEE----eC--------C-----CCCccceeeecc--
Q psy8875         504 SATAIDFV-F--R----TGMIFWSDISEKKIYKAPIDEGSERTVVI----EE--------D-----KTIADGLAVDWI--  557 (734)
Q Consensus       504 ~~~~i~~d-~--~----~~~lyw~d~~~~~I~~~~l~~g~~~~~~~----~~--------~-----~~~p~glAvD~~--  557 (734)
                      ....|++| .  .    .+.+|++|.....|..+++..+....++.    ..        +     .....|||+.+.  
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~  232 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDS  232 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcC
Confidence            45566666 2  2    57899999988889988888655444431    00        0     125668999887  


Q ss_pred             --CCcEEEEeCCCCeEEEEeC----CC---CceEEEEcCC-CCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-----
Q psy8875         558 --YSHIYWTDAHKNTIELANF----EG---TMRKVLVRSY-LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-----  622 (734)
Q Consensus       558 --~~~lY~td~~~~~I~~~~l----dG---~~~~~l~~~~-l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-----  622 (734)
                        .+.|||.-....+++++..    +.   ...+.+.... ..+..++++|+.+|.||+++.. ...|.+.+.++     
T Consensus       233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~~~~  311 (381)
T 3q6k_A          233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMPLRM  311 (381)
T ss_dssp             TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCSBCG
T ss_pred             CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCcccc
Confidence              7899999988888888863    11   2223333332 2455578999889999999975 47999998887     


Q ss_pred             CceEEEEE-cCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         623 SHRNMVIV-SDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       623 ~~~~~lv~-~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      .+..+++. ..+.||.+|+|| .++.||+......
T Consensus       312 ~n~~~l~~d~~l~~pd~~~i~-~~g~Lwv~sn~l~  345 (381)
T 3q6k_A          312 KNTDVVYTSSRFVFGTDISVD-SKGGLWFMSNGFP  345 (381)
T ss_dssp             GGEEEEEECTTCCSEEEEEEC-TTSCEEEEECSCC
T ss_pred             CceEEEEECCCccccCeEEEC-CCCeEEEEECcch
Confidence            34455554 578999999998 5778999875543

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=98.23  E-value=3.1e-07  Score=84.28  Aligned_cols=41  Identities=37%  Similarity=0.832  Sum_probs=36.0

Q ss_pred             cccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccC
Q psy8875         392 CAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDE  432 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~e  432 (734)
                      |...+++|.+.|+++++ +|+|.|++||.|..++++|.++++
T Consensus        91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~~e  132 (142)
T 2c4f_L           91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVE  132 (142)
T ss_dssp             TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEESSS
T ss_pred             ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCCCc
Confidence            34445788899999999 999999999999999999998876

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=98.23  E-value=6e-07  Score=67.10  Aligned_cols=42  Identities=40%  Similarity=0.992  Sum_probs=36.4

Q ss_pred             cccccccC--------CCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         388 GVDECAKD--------NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       388 ~~~eC~~~--------~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      ++|||...        +..|.+.|+|++++|+|.|++||.|..++++|.+
T Consensus         3 DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCccCC
Confidence            57788753        3679999999999999999999999989999864

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.20  E-value=8.8e-05  Score=86.45  Aligned_cols=229  Identities=10%  Similarity=0.081  Sum_probs=134.5

Q ss_pred             eeeeeeccceEEeecCC-----CceEEEecCCcc---------------eEEEeeeccCCeEEEEEe-------------
Q psy8875         476 SLLFARKHDIRKISLDH-----HEMTAIVNSTKS---------------ATAIDFVFRTGMIFWSDI-------------  522 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~-----~~~~~l~~~~~~---------------~~~i~~d~~~~~lyw~d~-------------  522 (734)
                      .|+++....|+..++.+     .....+......               +.+++|.+....|+++..             
T Consensus       134 ~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~  213 (706)
T 2z3z_A          134 RVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDY  213 (706)
T ss_dssp             EEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEEC
T ss_pred             EEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeecc
Confidence            45556677788888776     554444332222               468889988888888752             


Q ss_pred             -------------------CCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCC----CeEEEEeCCC
Q psy8875         523 -------------------SEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHK----NTIELANFEG  578 (734)
Q Consensus       523 -------------------~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~----~~I~~~~ldG  578 (734)
                                         ....|+.+++.++....+... .....+..+++.+.++.|+++....    ..|.+.++.+
T Consensus       214 ~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~  293 (706)
T 2z3z_A          214 HPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET  293 (706)
T ss_dssp             CSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT
T ss_pred             CCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC
Confidence                               234678888774432222111 1112345677777777788865432    3788888876


Q ss_pred             C-ceEEEEcC-CC---CCceeEEEeC--CCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc-ee-EEEecCCCeEE
Q psy8875         579 T-MRKVLVRS-YL---DEPRSLALNP--IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP-NG-LTLDLVQRRLY  649 (734)
Q Consensus       579 ~-~~~~l~~~-~l---~~P~~iavD~--~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P-~g-lavD~~~~~LY  649 (734)
                      . ..+.+... ..   .....+++.|  ...+||.+......+|+..+++|...+.+..  -.++ .. +++++.+++||
T Consensus       294 g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~v~~~~~~spdg~~l~  371 (706)
T 2z3z_A          294 GRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK--GEWEVTNFAGFDPKGTRLY  371 (706)
T ss_dssp             CCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC--SSSCEEEEEEECTTSSEEE
T ss_pred             CceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC--CCeEEEeeeEEcCCCCEEE
Confidence            5 44444421 11   1236788987  5555555544344688988887765554422  2222 33 78998888999


Q ss_pred             EEeCCCC----eEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCC---CceEEEeccCCC
Q psy8875         650 WVDAKLN----EISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQ---KAIYKANKFTGD  710 (734)
Q Consensus       650 w~D~~~~----~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~---~~v~~~~~~~G~  710 (734)
                      ++....+    .|+++++++...+.+..    ......+++.  +.+|.++-...   ..|+.++..+++
T Consensus       372 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          372 FESTEASPLERHFYCIDIKGGKTKDLTP----ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEESSSCTTCBEEEEEETTCCCCEESCC----SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEecCCCCceEEEEEEEcCCCCceeccC----CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9876544    89999988766554432    1223455553  34454442221   346666655554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.20  E-value=0.00028  Score=75.42  Aligned_cols=206  Identities=13%  Similarity=0.089  Sum_probs=118.0

Q ss_pred             eeeeee---ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC---CCc
Q psy8875         476 SLLFAR---KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK---TIA  549 (734)
Q Consensus       476 ~l~~~~---~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~---~~p  549 (734)
                      +||+++   ...|..|++........++... ..++ + +...+.|++....+++..+.+.............+   ..|
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~~~~-~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~  226 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-CYHI-F-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEF  226 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCS-EEEE-E-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSC
T ss_pred             EEEEEEcCCCCeEEEEECCCCcEEEEEECCC-ccee-e-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccccc
Confidence            455555   2467778877665543333211 1111 2 33344444555566666666653112111111111   122


Q ss_pred             cc--eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC---------CCCCc---eeEEEeCCCCeEEEEecC-----
Q psy8875         550 DG--LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS---------YLDEP---RSLALNPIDGWMYWSDWG-----  610 (734)
Q Consensus       550 ~g--lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~---------~l~~P---~~iavD~~~g~LYwtd~~-----  610 (734)
                      ..  .+++...+++||... .++|+++++.+...+++-.-         ....|   ..+++++..++||++...     
T Consensus       227 ~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~  305 (386)
T 3sjl_D          227 LINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR  305 (386)
T ss_dssp             BCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred             ccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence            22  355556777777655 58899999987765433111         11123   348999999999998631     


Q ss_pred             ---CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCC-eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE
Q psy8875         611 ---QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR-RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       611 ---~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~-~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v  686 (734)
                         ...+|+++++....+..-+... ..|.+|+|++.++ +||.+....+.|..++........-+   ....+|..|.+
T Consensus       306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i---~~~~~p~~l~~  381 (386)
T 3sjl_D          306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV---NQLGHGPQVIT  381 (386)
T ss_dssp             TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEE---CCCCSSCCEEE
T ss_pred             cCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEe---cCCCCCceeEE
Confidence               1257999888654432222111 3578999998876 79999998999999997543332222   34678887776


Q ss_pred             ECC
Q psy8875         687 FED  689 (734)
Q Consensus       687 ~~~  689 (734)
                      ..+
T Consensus       382 s~d  384 (386)
T 3sjl_D          382 TAD  384 (386)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            543

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.13  E-value=3.4e-06  Score=88.58  Aligned_cols=60  Identities=27%  Similarity=0.752  Sum_probs=48.9

Q ss_pred             CCCCCCCCCCCCccccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         375 DCPLMQDEDPTKCGVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       375 ~C~~g~d~~~~~C~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      .|+.||.+..+.-+++||... +..|.+.|+|++++|+|.|++||.+..++++|.++++|.
T Consensus        29 ~C~~g~~g~~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~~~~C~~~~~c~   89 (317)
T 3h5c_B           29 TCSPGYEGSNCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA   89 (317)
T ss_dssp             CCSSSCCSSSSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTTSSCCEECSSCC
T ss_pred             ECCCCCcCCccccCcccCCCCCCCCCcCccccCCCeeEEeccccccccccccccccccccc
Confidence            667777654322268899863 368999999999999999999999998999999998874

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.11  E-value=0.0001  Score=85.94  Aligned_cols=229  Identities=13%  Similarity=0.120  Sum_probs=143.1

Q ss_pred             ceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC-----CCceEEEEeCCCC--
Q psy8875         475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE-----GSERTVVIEEDKT--  547 (734)
Q Consensus       475 ~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~-----g~~~~~~~~~~~~--  547 (734)
                      ..++++....|+..++.+.....+......+..++|.+..+.|+++  ..+.|+..++.+     +....+. .....  
T Consensus        93 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~~-~~~~~~~  169 (706)
T 2z3z_A           93 GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAVT-IDGTETL  169 (706)
T ss_dssp             TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEESC-SCCBTTE
T ss_pred             CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEec-cCCCCCe
Confidence            4567777788888888877666665544456667888888888776  357888888875     4333222 11111  


Q ss_pred             ------------CccceeeeccCCcEEEEeC--------------------------------CCCeEEEEeCCCCceEE
Q psy8875         548 ------------IADGLAVDWIYSHIYWTDA--------------------------------HKNTIELANFEGTMRKV  583 (734)
Q Consensus       548 ------------~p~glAvD~~~~~lY~td~--------------------------------~~~~I~~~~ldG~~~~~  583 (734)
                                  .+.++++.+.++.|+++..                                ....|.+.++++.....
T Consensus       170 ~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~  249 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY  249 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE
T ss_pred             EcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe
Confidence                        1478888888888888751                                23578888887765444


Q ss_pred             EEcC--CCCCceeEEEeCCCCeEEEEecCC---CceEEEeccCCC-ceEEEEEc-CCC---CceeEEEec--CCCeEEEE
Q psy8875         584 LVRS--YLDEPRSLALNPIDGWMYWSDWGQ---NAKIERAGMDGS-HRNMVIVS-DIK---WPNGLTLDL--VQRRLYWV  651 (734)
Q Consensus       584 l~~~--~l~~P~~iavD~~~g~LYwtd~~~---~~~I~~~~ldG~-~~~~lv~~-~l~---~P~glavD~--~~~~LYw~  651 (734)
                      +...  ....+..+++.|...+|+++....   ...|+..++++. ..+.+... ...   ....+++.+  .++.||.+
T Consensus       250 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~  329 (706)
T 2z3z_A          250 LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS  329 (706)
T ss_dssp             CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE
T ss_pred             eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE
Confidence            3321  223467899999877888865321   247888888765 44444422 211   235688876  55555544


Q ss_pred             eC-CCCeEEEEecCCCceEEEEcCCCCCCCCe-E-EEE--ECCEEEEEeCCCC----ceEEEeccCCC
Q psy8875         652 DA-KLNEISSCDYNGGNRRLVLYSPQTLSHPF-S-IST--FEDWLYWSDWQQK----AIYKANKFTGD  710 (734)
Q Consensus       652 D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~-g-l~v--~~~~lywtd~~~~----~v~~~~~~~G~  710 (734)
                      +. +..+|+.++.+|...+.+...    ..+. + +++  .+++||++....+    .|++++..+|+
T Consensus       330 ~~~g~~~l~~~~~~~~~~~~l~~~----~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          330 RRDGWNHLYLYDTTGRLIRQVTKG----EWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             CTTSSCEEEEEETTSCEEEECCCS----SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             ccCCccEEEEEECCCCEEEecCCC----CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            32 345788888777666555321    2222 3 455  3567888876644    78888766654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.10  E-value=0.0014  Score=70.35  Aligned_cols=211  Identities=9%  Similarity=-0.026  Sum_probs=133.4

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      ....+.+|+|.+..+.++.+-...+.|...++..+.      .....+......+..|++.+.+.+++++-...+.|.+.
T Consensus        80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw  159 (402)
T 2aq5_A           80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW  159 (402)
T ss_dssp             CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred             CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence            345678999998455566666677888888887552      11222333445677888887766777777777899999


Q ss_pred             eCCCCceEEEE--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE-EcCC-CCceeEEEecCCCeEEE
Q psy8875         575 NFEGTMRKVLV--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI-VSDI-KWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       575 ~ldG~~~~~l~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~~~l-~~P~glavD~~~~~LYw  650 (734)
                      ++........+  .........|++.|...+|+.+.  ..+.|...++........+ .... ..+..+++.+. ++++.
T Consensus       160 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~  236 (402)
T 2aq5_A          160 DVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILT  236 (402)
T ss_dssp             ETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEE
T ss_pred             ECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEE
Confidence            98766554444  44556778999998666666655  3467888777654333233 2222 23678888754 55555


Q ss_pred             Ee---CCCCeEEEEecCCCce-EEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCc-eEEE
Q psy8875         651 VD---AKLNEISSCDYNGGNR-RLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDN-LTAI  715 (734)
Q Consensus       651 ~D---~~~~~I~~~~~dG~~~-~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~-~~~l  715 (734)
                      +-   ...+.|...++..... ..+... ........+++.  +..||++....+.|...+..+++. +..+
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l  307 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL  307 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE
T ss_pred             EeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee
Confidence            54   5667888888765432 222211 123345677774  567888877677787777777764 4444

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.09  E-value=8.5e-05  Score=79.31  Aligned_cols=224  Identities=12%  Similarity=0.031  Sum_probs=126.3

Q ss_pred             ceEEeecCCCceEEEecCCcceE-EEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc-----------
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSAT-AIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG-----------  551 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~-~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g-----------  551 (734)
                      .|+.+++.+.....+........ ++.|.+..+.|+++.. .+.|+.++++++..+.+........|.|           
T Consensus        61 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~  139 (396)
T 3c5m_A           61 NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL  139 (396)
T ss_dssp             EEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred             eEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence            57777777766655543322222 2567777888877764 3468998888554333322111111221           


Q ss_pred             -------eeeeccCCcEEEEe----CCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC-CCCeEEEEecCCC----ceE
Q psy8875         552 -------LAVDWIYSHIYWTD----AHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQN----AKI  615 (734)
Q Consensus       552 -------lAvD~~~~~lY~td----~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~~----~~I  615 (734)
                             +++.+..+.|+++.    .....|++.++.+...+.+. ........+++.| ..++|+++..+..    .+|
T Consensus       140 ~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l  218 (396)
T 3c5m_A          140 VGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARM  218 (396)
T ss_dssp             EEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCC
T ss_pred             ccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceE
Confidence                   11222233333332    33457888888766555554 2344567888888 4555766643322    579


Q ss_pred             EEeccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEe--CCCCe--EEEEecCCCceEEEEcCCCCCCCCeEEEEE--C
Q psy8875         616 ERAGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVD--AKLNE--ISSCDYNGGNRRLVLYSPQTLSHPFSISTF--E  688 (734)
Q Consensus       616 ~~~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D--~~~~~--I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~  688 (734)
                      +..++++...+.+.... ...+..+++.+.+.+|+++.  .....  |+.+++.+...+.+...+.     ..+++.  .
T Consensus       219 ~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-----~~~~~s~~d  293 (396)
T 3c5m_A          219 WLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-----CSHLMSNFD  293 (396)
T ss_dssp             EEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-----EEEEEECSS
T ss_pred             EEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-----CCCCccCCC
Confidence            99999887655443321 22356678888888787773  23334  9999988766655543211     114442  3


Q ss_pred             CEEEEEe----------------CCCCceEEEeccCCCceEE
Q psy8875         689 DWLYWSD----------------WQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       689 ~~lywtd----------------~~~~~v~~~~~~~G~~~~~  714 (734)
                      +.++++.                .+...|+.++..+|+...+
T Consensus       294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l  335 (396)
T 3c5m_A          294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKL  335 (396)
T ss_dssp             SSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEE
T ss_pred             CceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEc
Confidence            4444432                1346788888776665433

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.09  E-value=0.00016  Score=84.69  Aligned_cols=222  Identities=9%  Similarity=0.082  Sum_probs=136.6

Q ss_pred             eeeeeeccceEEeecCCC---ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC-----
Q psy8875         476 SLLFARKHDIRKISLDHH---EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT-----  547 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~---~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~-----  547 (734)
                      .|+++....|+.+++.+.   ....+......+..++|.+..++|+++.  .+.|+..++.++... .+......     
T Consensus       122 ~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~--~~~i~~~d~~~g~~~-~~~~~~~~~~~~g  198 (741)
T 2ecf_A          122 RLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR--GRNLWVIDLASGRQM-QLTADGSTTIGNG  198 (741)
T ss_dssp             EEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE--TTEEEEEETTTTEEE-ECCCCCCSSEEES
T ss_pred             EEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe--CCcEEEEecCCCCEE-EeccCCccceecc
Confidence            466666688888888877   5655555556788899999888888775  457998888754322 22211111     


Q ss_pred             -----------CccceeeeccCCcEEEEeCCC--------------------------------CeEEEEeCCC-CceEE
Q psy8875         548 -----------IADGLAVDWIYSHIYWTDAHK--------------------------------NTIELANFEG-TMRKV  583 (734)
Q Consensus       548 -----------~p~glAvD~~~~~lY~td~~~--------------------------------~~I~~~~ldG-~~~~~  583 (734)
                                 .+.++++.+.++.|+++....                                ..|++.++++ .....
T Consensus       199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~  278 (741)
T 2ecf_A          199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW  278 (741)
T ss_dssp             CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred             ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence                       147788888888888875322                                1677778776 55444


Q ss_pred             EEcC--CCCCceeEEEeCCCCeEEEEecC---CCceEEEeccCCCceEEEEEcCC-C---CceeEEEecCCCeEEEEeCC
Q psy8875         584 LVRS--YLDEPRSLALNPIDGWMYWSDWG---QNAKIERAGMDGSHRNMVIVSDI-K---WPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       584 l~~~--~l~~P~~iavD~~~g~LYwtd~~---~~~~I~~~~ldG~~~~~lv~~~l-~---~P~glavD~~~~~LYw~D~~  654 (734)
                      +...  ....+..+++ |...+|+++...   ....|+..++++...+.++.... .   ....+++.+.+. ++|+...
T Consensus       279 ~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~  356 (741)
T 2ecf_A          279 IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSER  356 (741)
T ss_dssp             ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEECT
T ss_pred             ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEecC
Confidence            4322  2334578888 887888877531   23578888887665555543221 1   235788876655 5555433


Q ss_pred             --CCeEEEEecCCCceEEEEcCCCCCCCCeEE-EE--ECCEEEEEeCCC----CceEEEec
Q psy8875         655 --LNEISSCDYNGGNRRLVLYSPQTLSHPFSI-ST--FEDWLYWSDWQQ----KAIYKANK  706 (734)
Q Consensus       655 --~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl-~v--~~~~lywtd~~~----~~v~~~~~  706 (734)
                        ..+|+.++++|. .+.+...   -.....+ ++  .+++||++....    ..|++++.
T Consensus       357 ~g~~~l~~~~~~~~-~~~l~~~---~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          357 TGFQHLYRIDSKGK-AAALTHG---NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             TSSCEEEEECSSSC-EEESCCS---SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred             CCccEEEEEcCCCC-eeeeeec---ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence              347898888887 5444321   1122233 24  456787765543    34677653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.08  E-value=0.00011  Score=85.01  Aligned_cols=197  Identities=8%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             ccCCe-EEEEEeCCCcEEEEecC--C-CCceEEEEeC----CCCCccceeeeccCCcEEEEeCC---------CCeEEEE
Q psy8875         512 FRTGM-IFWSDISEKKIYKAPID--E-GSERTVVIEE----DKTIADGLAVDWIYSHIYWTDAH---------KNTIELA  574 (734)
Q Consensus       512 ~~~~~-lyw~d~~~~~I~~~~l~--~-g~~~~~~~~~----~~~~p~glAvD~~~~~lY~td~~---------~~~I~~~  574 (734)
                      |..++ |+++......|+.++++  + +..+ .+...    ....+.++++.+.++.|+++...         ...|++.
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            56777 88887667789999886  3 4332 22221    12345678888888889887643         2579999


Q ss_pred             eCCC------CceEEEEcCCCCCceeEEEeCCCCeEEEEecCC------CceEEEeccCC-C---ceEEEEEcCCCCcee
Q psy8875         575 NFEG------TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ------NAKIERAGMDG-S---HRNMVIVSDIKWPNG  638 (734)
Q Consensus       575 ~ldG------~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~------~~~I~~~~ldG-~---~~~~lv~~~l~~P~g  638 (734)
                      ++++      ...+.+.........++++.|...+|+|+.+..      ...|+..++++ .   ..+.+.......+..
T Consensus       167 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~  246 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQ  246 (662)
T ss_dssp             ETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEE
T ss_pred             ECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcc
Confidence            9988      555444313334567789999888999887532      25799999984 2   333344333455778


Q ss_pred             EEEecCCCeEEEEeCCCC--eEEEEecCCCceEEEEcCCCCCCC------CeEEEEE-CCEEEEEeC-CCCceEEEeccC
Q psy8875         639 LTLDLVQRRLYWVDAKLN--EISSCDYNGGNRRLVLYSPQTLSH------PFSISTF-EDWLYWSDW-QQKAIYKANKFT  708 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~i~~~~~~~~~------P~gl~v~-~~~lywtd~-~~~~v~~~~~~~  708 (734)
                      +++.+.+. ||++....+  .|+++++++...+.+.........      ...+++. +++|+++.. +...|++++..+
T Consensus       247 ~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~  325 (662)
T 3azo_A          247 AEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPES  325 (662)
T ss_dssp             EEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTT
T ss_pred             eEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCC
Confidence            88876666 666654434  899999876665555432222211      2345653 555655533 344566666544


Q ss_pred             CC
Q psy8875         709 GD  710 (734)
Q Consensus       709 G~  710 (734)
                      |+
T Consensus       326 ~~  327 (662)
T 3azo_A          326 GE  327 (662)
T ss_dssp             TE
T ss_pred             Cc
Confidence            43

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.07  E-value=0.0042  Score=66.68  Aligned_cols=229  Identities=8%  Similarity=0.041  Sum_probs=141.1

Q ss_pred             ccceEEeecCCCceE-EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMT-AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~-~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+..++...... .+......+..++|+  . .++++-...+.|+..++.........+......+.+|++.+. +.
T Consensus       155 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~  230 (401)
T 4aez_A          155 NGLVDIYDVESQTKLRTMAGHQARVGCLSWN--R-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GL  230 (401)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SS
T ss_pred             CCeEEEEECcCCeEEEEecCCCCceEEEEEC--C-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC-CC
Confidence            445666666544433 333345567788885  3 455566677888888887434333344444556778888864 45


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNGL  639 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~gl  639 (734)
                      ++++-...+.|.+.++........+.........|++.|....|+.+..+ ..+.|...++........+. .-.....|
T Consensus       231 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~  309 (401)
T 4aez_A          231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSL  309 (401)
T ss_dssp             EEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEE
T ss_pred             EEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEE
Confidence            55555556889999998665555554556678999999988888887632 35788888876544433333 23457889


Q ss_pred             EEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         640 TLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       640 avD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++.+.+..|+.+.. ..+.|...++.......+............|++. .+.++++-...+.|...+..+++.+...
T Consensus       310 ~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          310 IWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             EECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            99877777777643 5678888887765443332211223456677774 3445555555677877777777665443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.07  E-value=0.00069  Score=72.13  Aligned_cols=202  Identities=9%  Similarity=0.022  Sum_probs=120.1

Q ss_pred             EeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875         508 IDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV  585 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~  585 (734)
                      .+|.+..++|+++....+  .|+.+++.++. ...+.........++++.+.++.|+++... ..|++.++.+...+.+.
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~  118 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-ATQLTEGRGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVY  118 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCE-EEECCCSSCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-eEEeeeCCCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeee
Confidence            567777777777765333  58888888543 222322221222367888888899998863 68999999877666555


Q ss_pred             cCCCCCc--eeEEEeCCCCeEEEEe--------------------cCCCceEEEeccCCCceEEEEEcCCCCceeEEEec
Q psy8875         586 RSYLDEP--RSLALNPIDGWMYWSD--------------------WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDL  643 (734)
Q Consensus       586 ~~~l~~P--~~iavD~~~g~LYwtd--------------------~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~  643 (734)
                      .......  ...++++...+|+...                    .+....|++.++++...+.+... ......+++.+
T Consensus       119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~~~~~~~sp  197 (388)
T 3pe7_A          119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-NQWLGHPIYRP  197 (388)
T ss_dssp             ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-SSCEEEEEEET
T ss_pred             echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-CccccccEECC
Confidence            3322211  1223455544444221                    11236899999887666555543 33467889988


Q ss_pred             -CCCeEEEEeCC-----CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC-CCC---ceEEEeccCCCc
Q psy8875         644 -VQRRLYWVDAK-----LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW-QQK---AIYKANKFTGDN  711 (734)
Q Consensus       644 -~~~~LYw~D~~-----~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~-~~~---~v~~~~~~~G~~  711 (734)
                       .+++|+++...     ...|+.++++|...+.+..... ......+++  .+.+|+++.. ...   .|+.++..+|+.
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE-GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT-TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC-CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence             77778776543     4589999999887776643210 011223445  3455655433 222   388888777764


Q ss_pred             eE
Q psy8875         712 LT  713 (734)
Q Consensus       712 ~~  713 (734)
                      ..
T Consensus       277 ~~  278 (388)
T 3pe7_A          277 RQ  278 (388)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.07  E-value=0.00058  Score=70.91  Aligned_cols=219  Identities=14%  Similarity=0.174  Sum_probs=126.7

Q ss_pred             eeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD  555 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD  555 (734)
                      .+++.... |++++.++................++.  .+.||+. ...+.|++++.. |.... ...........+++|
T Consensus        72 ~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~-t~~~~l~~~d~~-g~~~~-~~~~~~~~~~~~~~~  145 (330)
T 3hxj_A           72 TIYFGSDK-VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVT-SMDGHLYAINTD-GTEKW-RFKTKKAIYATPIVS  145 (330)
T ss_dssp             EECCSSCE-EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEE-CTTSEEEEECTT-SCEEE-EEECSSCCCSCCEEC
T ss_pred             cEEEecCc-EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEE-ecCCEEEEEcCC-CCEEE-EEcCCCceeeeeEEc
Confidence            45554445 777766544322111110011112222  6667655 346789998877 54322 222233345567777


Q ss_pred             ccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC
Q psy8875         556 WIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW  635 (734)
Q Consensus       556 ~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~  635 (734)
                       ..++||+... .+.|.+.+.+|.....+. ........+++|. .+.||++.    ..|.+.+.+|...... ......
T Consensus       146 -~~g~l~vgt~-~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~d~-~g~l~v~t----~~l~~~d~~g~~~~~~-~~~~~~  216 (330)
T 3hxj_A          146 -EDGTIYVGSN-DNYLYAINPDGTEKWRFK-TNDAITSAASIGK-DGTIYFGS----DKVYAINPDGTEKWNF-YAGYWT  216 (330)
T ss_dssp             -TTSCEEEECT-TSEEEEECTTSCEEEEEE-CSSCCCSCCEECT-TCCEEEES----SSEEEECTTSCEEEEE-CCSSCC
T ss_pred             -CCCEEEEEcC-CCEEEEECCCCCEeEEEe-cCCCceeeeEEcC-CCEEEEEe----CEEEEECCCCcEEEEE-ccCCcc
Confidence             4567777654 478999998865443333 2334566788875 57788876    5688887666543322 222344


Q ss_pred             ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      ..++++| .+++||++.. .+.|.+++.+|.....+....   ..+.++.+. ++.||++... +.|+++++ +|+.+..
T Consensus       217 ~~~~~~~-~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~v~t~~-ggl~~~d~-~g~~~~~  289 (330)
T 3hxj_A          217 VTRPAIS-EDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK---RIESSPVIGNTDTIYFGSYD-GHLYAINP-DGTEKWN  289 (330)
T ss_dssp             CSCCEEC-TTSCEEEEET-TTEEEEECTTSCEEEEEECSS---CCCSCCEECTTSCEEEECTT-CEEEEECT-TSCEEEE
T ss_pred             eeceEEC-CCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC---CccccceEcCCCeEEEecCC-CCEEEECC-CCcEEEE
Confidence            6788887 4568888864 467888887776655443321   223345665 6788887653 57899986 6776555


Q ss_pred             Ee
Q psy8875         715 IT  716 (734)
Q Consensus       715 l~  716 (734)
                      ..
T Consensus       290 ~~  291 (330)
T 3hxj_A          290 FE  291 (330)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.06  E-value=0.0053  Score=63.20  Aligned_cols=230  Identities=7%  Similarity=-0.032  Sum_probs=139.7

Q ss_pred             eeeeeeccceEEeecCCCc----eEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCC
Q psy8875         476 SLLFARKHDIRKISLDHHE----MTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTI  548 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~----~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~  548 (734)
                      +++......|+..++....    ...+.  .....+..++|.+....|+.. ...+.|+..++..+... ...+......
T Consensus        65 ~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~  143 (337)
T 1gxr_A           65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPA  143 (337)
T ss_dssp             EEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC--EEEEEEECSSSC
T ss_pred             EEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCcceeeecccCCCc
Confidence            3444445556655654332    12221  334567889999866555544 45678888888754422 2223333445


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV  628 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l  628 (734)
                      +..+++.+.++.|+.. ...+.|.+.++........+......+..+++.|...+|+...  ..+.|...++........
T Consensus       144 i~~~~~~~~~~~l~~~-~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~  220 (337)
T 1gxr_A          144 CYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG--LDNTVRSWDLREGRQLQQ  220 (337)
T ss_dssp             EEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe--cCCcEEEEECCCCceEee
Confidence            6788888655555544 4468899999876655555545566788999998766666655  346788888765543333


Q ss_pred             EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEecc
Q psy8875         629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~  707 (734)
                      + .....+..+++.+.+..|+.+. ..+.|...++.......+.   .......+|++. .+.++++-...+.|...+..
T Consensus       221 ~-~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          221 H-DFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             E-ECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             e-cCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEc---CCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            3 2334567889987776666654 4578888888876655443   223345677774 34444444445677777776


Q ss_pred             CCCceEE
Q psy8875         708 TGDNLTA  714 (734)
Q Consensus       708 ~G~~~~~  714 (734)
                      +++.+..
T Consensus       296 ~~~~~~~  302 (337)
T 1gxr_A          296 YGASIFQ  302 (337)
T ss_dssp             TCCEEEE
T ss_pred             CCeEEEE
Confidence            6665543

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=98.05  E-value=9.6e-06  Score=92.79  Aligned_cols=103  Identities=17%  Similarity=0.317  Sum_probs=63.2

Q ss_pred             CcccCCCcccCCCCCcc---ccCCCCCccCCCcccccc---CCCCCCCCCC-ceee-CCCceecCcCCCCCCCCCC----
Q psy8875         186 HLCLPAPQINAHSPKIS---CACPEGLKLLPDLLMCAE---AGSKPCRNST-MFRC-TGGMCIPSTWVCDGQNDCP----  253 (734)
Q Consensus       186 ~~C~~~~~~~~~~~~~~---C~C~~G~~~~~~~~~~~~---~~~~~C~~~~-~~~C-~~g~Ci~~~~~Cdg~~dC~----  253 (734)
                      .+|.|.+.|.+..+.+.   |.|++||.|..|+.....   .....|.... .-.| ++|+|+.  ..|.    |.    
T Consensus       440 ~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~--g~C~----C~~~~~  513 (690)
T 3fcs_B          440 QAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC--GQCV----CHSSDF  513 (690)
T ss_dssp             TCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS--SSEE----ECCCSS
T ss_pred             CCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC--CeeE----eecCCC
Confidence            46777777775556676   999999999988654310   0012343111 1234 3467763  4555    88    


Q ss_pred             CCCCCCCCC---CCCCCC-ceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         254 DGVDEKKCH---ETCRSD-EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       254 dg~de~~C~---~~C~~~-~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                      .|+.+..|+   ..|... ...|.++ +|+.  ..|    .|..|+.+..|+
T Consensus       514 ~Gy~G~~Ce~~~~~C~~~~~~~C~~~G~C~~--g~C----~C~~Gy~G~~Ce  559 (690)
T 3fcs_B          514 GKITGKYCECDDFSCVRYKGEMCSGHGQCSC--GDC----LCDSDWTGYYCN  559 (690)
T ss_dssp             CCCBSTTSCBCSSCCCBSSSSBGGGSEEEET--TEE----EECTTEESSSSC
T ss_pred             CCeeCCCcCcccCcCcCCCCCCCCCCCEecC--Cee----ECcCCCcCCCCc
Confidence            888888885   456532 2357644 7776  566    778888777776

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.03  E-value=0.0067  Score=65.04  Aligned_cols=228  Identities=7%  Similarity=0.011  Sum_probs=139.3

Q ss_pred             eeeeeeccceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      ++..+.+..|+..++.......+..  ....+.+|+|.+....|+. -...+.|...++..+..... +......+..|+
T Consensus       106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~  183 (401)
T 4aez_A          106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSV-GLGNGLVDIYDVESQTKLRT-MAGHQARVGCLS  183 (401)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEE-EETTSCEEEEETTTCCEEEE-ECCCSSCEEEEE
T ss_pred             EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEE-ECCCCeEEEEECcCCeEEEE-ecCCCCceEEEE
Confidence            4444556677777777666554443  2456789999985555544 44677888888875443333 222333444555


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCC-CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFE-GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD  632 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~  632 (734)
                      ++   ++++++-...+.|.+.++. +......+........++++.|...+|+...  ..+.|...++........+...
T Consensus       184 ~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~  258 (401)
T 4aez_A          184 WN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG--NDNVVQIWDARSSIPKFTKTNH  258 (401)
T ss_dssp             EE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCSSEEEEECCC
T ss_pred             EC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEccCCCCCccEEecCC
Confidence            53   4566666667899999987 3333334445566788999998655555554  2467777777654444344444


Q ss_pred             CCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEe-CCCCceEEEecc
Q psy8875         633 IKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSD-WQQKAIYKANKF  707 (734)
Q Consensus       633 l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd-~~~~~v~~~~~~  707 (734)
                      ......|++.+.+..|+.+-.  ..+.|...++........+..   .....+|++  .+..|+.+. ...+.|...+..
T Consensus       259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA---GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC---CCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            556788999887878888754  578899989875554443332   233556666  334444443 244566666555


Q ss_pred             CCCceE
Q psy8875         708 TGDNLT  713 (734)
Q Consensus       708 ~G~~~~  713 (734)
                      +++...
T Consensus       336 ~~~~~~  341 (401)
T 4aez_A          336 SSGLTK  341 (401)
T ss_dssp             TTEEEE
T ss_pred             Ccccee
Confidence            554433

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.97  E-value=4.9e-06  Score=62.03  Aligned_cols=42  Identities=36%  Similarity=0.938  Sum_probs=35.5

Q ss_pred             ccccCcCC---------CCCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         428 IDIDECET---------PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       428 ~~~~eC~~---------~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      .|||||..         ..+|+++|+|+.|+|.|.|++||.+..+.++ |.+
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~~-C~~   52 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS-CQA   52 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSC-EEC
T ss_pred             CccccccCcccccccccCCCCCCEeECCCCCeEEECCCCCeECCCCCc-cCC
Confidence            47899975         3679999999999999999999999887665 753

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.96  E-value=0.0009  Score=72.87  Aligned_cols=207  Identities=9%  Similarity=0.062  Sum_probs=131.1

Q ss_pred             EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--e----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeE
Q psy8875         498 IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--R----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTI  571 (734)
Q Consensus       498 l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I  571 (734)
                      +......+.+|+|++....++++-...+.|...++..+..  .    ...+......+..|++.+..++++++....+.|
T Consensus       177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i  256 (430)
T 2xyi_A          177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKL  256 (430)
T ss_dssp             EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeE
Confidence            3344556788999987664667777788898888875322  1    112222334577888887788899998888999


Q ss_pred             EEEeCCCC---ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-CceEEEEEcCCCCceeEEEecCCCe
Q psy8875         572 ELANFEGT---MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       572 ~~~~ldG~---~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      .+.++...   .....+......++.|++.|...+++++-. ..+.|...++.. ......+.........|++.+.+..
T Consensus       257 ~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~  335 (430)
T 2xyi_A          257 MIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET  335 (430)
T ss_dssp             EEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTT
T ss_pred             EEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCC
Confidence            99998754   222223344567899999998777777763 346777777764 2222233334456788999887778


Q ss_pred             EEEEeCCCCeEEEEecCCCc------------eEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEe
Q psy8875         648 LYWVDAKLNEISSCDYNGGN------------RRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~------------~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~  705 (734)
                      |+.+-...+.|...++....            ...+.........+..|++.  +.+++++-...+.|...+
T Consensus       336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            88887777788887766421            12222212233457778884  233666665556554443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=97.96  E-value=0.00056  Score=80.05  Aligned_cols=208  Identities=6%  Similarity=-0.013  Sum_probs=134.0

Q ss_pred             cceEEEeeeccCCeEEEEEeCCC-----cEEEEecCCCCceEEEEeCCC-----------------------CCccceee
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEK-----KIYKAPIDEGSERTVVIEEDK-----------------------TIADGLAV  554 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~-----~I~~~~l~~g~~~~~~~~~~~-----------------------~~p~glAv  554 (734)
                      ..+..++|.+...+|+++....+     .|+..++.++....++.....                       ..+..+++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            45788999988888888876344     789999885544333321111                       12578899


Q ss_pred             eccCCcEEEEeCCCCeEEEEeCCCC---ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         555 DWIYSHIYWTDAHKNTIELANFEGT---MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       555 D~~~~~lY~td~~~~~I~~~~ldG~---~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      .+.++.|+++..  +.|++.++++.   ..+.+. .....+..+++.|...+|+++.   ...|+..++++.....+...
T Consensus       117 SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~-~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          117 SPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLT-HGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             CTTSSEEEEEET--TEEEEEESSSCSTTSCCBCC-CSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEEECCCC
T ss_pred             CCCCCEEEEEeC--CcEEEEECCCCCcceEEEcc-cCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEEEeccC
Confidence            988888888876  89999999876   444333 3335678999999888888876   24799999887654433322


Q ss_pred             CCC----------------CceeEEEecCCCeEEEEeCCC--------------------------------CeEEEEec
Q psy8875         632 DIK----------------WPNGLTLDLVQRRLYWVDAKL--------------------------------NEISSCDY  663 (734)
Q Consensus       632 ~l~----------------~P~glavD~~~~~LYw~D~~~--------------------------------~~I~~~~~  663 (734)
                      ...                .+.++++.+.+.+|+++....                                ..|+.+++
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence            111                147899998888898874321                                16777787


Q ss_pred             CC-CceEEEEcCCCCCCCCeEEEE-ECCEEEEEeC----CCCceEEEeccCCCceEEEe
Q psy8875         664 NG-GNRRLVLYSPQTLSHPFSIST-FEDWLYWSDW----QQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       664 dG-~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~----~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++ ...+.+............+++ ++.+|+++..    ....|+.++..+|+...++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~  329 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH  329 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE
T ss_pred             CCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE
Confidence            77 655544321011122233443 5667776643    24568888877777665554

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.95  E-value=5.2e-06  Score=65.32  Aligned_cols=46  Identities=26%  Similarity=0.512  Sum_probs=39.3

Q ss_pred             cccccCcCC-CCCcccceeccCC-ceEEecCCCeeeCCCCCcccccccc
Q psy8875         427 CIDIDECET-PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       427 C~~~~eC~~-~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ..|+|||.. ++.|+|+|+|+.| +|.|.|++||.+..++++ |.+++.
T Consensus         2 ~~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~t-C~d~de   49 (69)
T 1kli_L            2 KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS-CTPTVE   49 (69)
T ss_dssp             CSCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSC-EEECSS
T ss_pred             CcccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCc-ccCccc
Confidence            357899964 5889999999999 899999999999988777 887554

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.93  E-value=6e-06  Score=92.33  Aligned_cols=76  Identities=25%  Similarity=0.537  Sum_probs=55.4

Q ss_pred             ceecCcCccCCCCCCCC-CCccccccc-CcccC----Cceecc-CCCCeeeCCCCCCCCCCCCCCCCCcCCCCCCCcccc
Q psy8875          66 MCIPSTWVCDGQNDCPD-GVDEKKCQK-RICGQ----EEFTCR-SSPGECVPLTWMCDDNPDCSDGSDEKSCKNRTCQAS  138 (734)
Q Consensus        66 ~Ci~~~~~cdg~~dC~d-g~de~~C~~-~~C~~----~~~~C~-~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~~~~C~~~  138 (734)
                      +.|...... |...|++ ..|++.|.. ..|.+    .+|+|. +  |+||+..|+|||..||.||+||.+|.     ..
T Consensus        33 R~v~~p~q~-gG~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~sdE~~c~-----~~  104 (537)
T 3ojy_B           33 AYLLQPSQF-HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQT--GRCVNRRLLCNGDNDCGDQSDEANCR-----RI  104 (537)
T ss_dssp             CCEEECEET-TCCCCCSCSEEEEECCCCCCCCCCSCCSSEECTTT--CCEECGGGTTSSSCCSSSSCTTSSCS-----SC
T ss_pred             eeecccccc-CCCcCccchhhhccCCCccccccCCCCCccCcCCC--CcEeeccccCCCCCCCCCccccccCC-----CC
Confidence            455444433 5566764 467778854 44532    689998 6  69999999999999999999999884     23


Q ss_pred             cCcCCCCceEe
Q psy8875         139 EFRCGNNRCIP  149 (734)
Q Consensus       139 ~f~C~~g~Ci~  149 (734)
                      ++.|..++++|
T Consensus       105 ~~~C~~~~~~~  115 (537)
T 3ojy_B          105 YKKCQHEMDQY  115 (537)
T ss_dssp             SSCCSSCCBCC
T ss_pred             CCccccCcCCC
Confidence            46787777776

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.92  E-value=0.0035  Score=73.12  Aligned_cols=228  Identities=7%  Similarity=-0.017  Sum_probs=137.1

Q ss_pred             ceEEeecCCCceEEEecC-------CcceEEEeeeccCCeEEEEEeCCC----cEEEEecCCCCceEEEEeCCCCCccce
Q psy8875         484 DIRKISLDHHEMTAIVNS-------TKSATAIDFVFRTGMIFWSDISEK----KIYKAPIDEGSERTVVIEEDKTIADGL  552 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~-------~~~~~~i~~d~~~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~~~~~p~gl  552 (734)
                      .|+++.+.+...+.++..       .....+++|.+...+|.++....+    .|+.+++.+|......+. . ....++
T Consensus        99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-~-~~~~~~  176 (710)
T 2xdw_A           99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-R-VKFSCM  176 (710)
T ss_dssp             EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-E-ECSCCE
T ss_pred             EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-C-cccceE
Confidence            456666655555544321       113567889988888877654333    799999986654433332 1 124567


Q ss_pred             eeeccCCcEEEEeCCC---------------CeEEEEeCCCCce--EEEEcCC--CCCceeEEEeCCCCeEEEEecCC--
Q psy8875         553 AVDWIYSHIYWTDAHK---------------NTIELANFEGTMR--KVLVRSY--LDEPRSLALNPIDGWMYWSDWGQ--  611 (734)
Q Consensus       553 AvD~~~~~lY~td~~~---------------~~I~~~~ldG~~~--~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~--  611 (734)
                      +..+.++.||++....               .+|++.++.+...  +.+....  .....++++.|..++|+++....  
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~  256 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCD  256 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCC
Confidence            7776778888886532               3489888876542  2333322  22346899999888888876422  


Q ss_pred             -CceEEEeccCC------C--ceEEEEEcCCCCceeEEEecCCCeEEEEeCC---CCeEEEEecCCCc---eEEEEcCCC
Q psy8875         612 -NAKIERAGMDG------S--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK---LNEISSCDYNGGN---RRLVLYSPQ  676 (734)
Q Consensus       612 -~~~I~~~~ldG------~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~~---~~~I~~~~~dG~~---~~~i~~~~~  676 (734)
                       ...|+..++++      .  ..+.+.. .... ....+++.+++||+....   ..+|+.+++++..   .+.++....
T Consensus       257 ~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  334 (710)
T 2xdw_A          257 PVNRLWYCDLQQESNGITGILKWVKLID-NFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE  334 (710)
T ss_dssp             SCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             CccEEEEEECcccccccCCccceEEeeC-CCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence             46899988874      2  2333332 2221 122466678899988543   4589999988764   255553211


Q ss_pred             CCCCCeEEEEE-CCEEEEEeCCC--CceEEEeccCCCceEEEe
Q psy8875         677 TLSHPFSISTF-EDWLYWSDWQQ--KAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       677 ~~~~P~gl~v~-~~~lywtd~~~--~~v~~~~~~~G~~~~~l~  716 (734)
                       .....++++. +++|+++-...  .+|+.++..+|+.++.|.
T Consensus       335 -~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          335 -KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             -SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             -CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence             1123457776 78888876543  357777765676555553

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.88  E-value=8.3e-06  Score=91.28  Aligned_cols=43  Identities=40%  Similarity=0.927  Sum_probs=36.0

Q ss_pred             CCCcCCCCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          46 TVYWRSKPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        46 ~~c~~~~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      ..|.....|.  .+|+|. +|+||+..|+|||..||.|||||.+|.
T Consensus        58 ~~c~~~~~c~--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~C~  101 (554)
T 3ojy_A           58 TTCVRQAQCG--QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDCE  101 (554)
T ss_dssp             CCC--CCCCS--SSEECSSSCCEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             CCCcccCCCC--CcCccCCCCEEcccccccCCcccCCCccccccCC
Confidence            3453345565  799999 999999999999999999999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.003  Score=69.00  Aligned_cols=198  Identities=8%  Similarity=-0.022  Sum_probs=119.7

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecC--CCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPID--EGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~--~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      .+.+|+|.+....|+.+-...+.|...++.  .+.....+.. .....+..|++.+.+..|+.+.. .+.|.+.++....
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcc
Confidence            578899999888877777777888777776  5555444431 22345778999887777777765 6788888875433


Q ss_pred             eEE----EEcCCCCCceeEEEeCC---CCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         581 RKV----LVRSYLDEPRSLALNPI---DGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       581 ~~~----l~~~~l~~P~~iavD~~---~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      ...    .+......+..|++.|.   ..+|+.+..  .+.|...++.... ...++......+..|++. .+..|+.+ 
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~-  258 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSA-  258 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEE-
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEE-
Confidence            211    12233456789999987   445555543  3566666665333 333333344567888987 55555544 


Q ss_pred             CCCCeEEEEecCCCceEEEEcCC-----------------------CCCCCCeEEEEE--CCEEEEEeCCCCceEEEec
Q psy8875         653 AKLNEISSCDYNGGNRRLVLYSP-----------------------QTLSHPFSISTF--EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       653 ~~~~~I~~~~~dG~~~~~i~~~~-----------------------~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~  706 (734)
                      ...+.|...++........+...                       ..-....+|++.  +.+||.+....+.|...+.
T Consensus       259 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          259 GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            45678888887655433332210                       001123355553  5677777755566666554

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=97.87  E-value=8e-06  Score=61.30  Aligned_cols=43  Identities=26%  Similarity=0.649  Sum_probs=36.4

Q ss_pred             cCcCC-CCCcccceeccCCceEEecCCCeeeCCCCCccccccccc
Q psy8875         431 DECET-PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEGH  474 (734)
Q Consensus       431 ~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~~  474 (734)
                      |||+. ++.|+|+|+|++|+|+|.|++||.+..+.++ |++++..
T Consensus         2 dEC~~~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~-C~didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKA-CIPTGPY   45 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTEEEEECCTTEEECTTSSC-EEESSSS
T ss_pred             ccccCCCCCcCcEeEcCCCCeEEeCCCCCEECCCCCe-eccCccc
Confidence            67864 4789999999999999999999999888776 8876543

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.85  E-value=8.7e-06  Score=91.03  Aligned_cols=61  Identities=30%  Similarity=0.815  Sum_probs=44.9

Q ss_pred             CCCCCCCC-CCcCCCCC-CCccc----ccCcCC-CCceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCC
Q psy8875         117 DNPDCSDG-SDEKSCKN-RTCQA----SEFRCG-NNRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS  185 (734)
Q Consensus       117 g~~dC~dg-~de~~C~~-~~C~~----~~f~C~-~g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~  185 (734)
                      |...|... .|+..|.. ..|..    .+|+|. +|+||+..|+|||..||.|||||.+        |......|.
T Consensus        42 gG~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~--------c~~~~~~C~  109 (537)
T 3ojy_B           42 HGEPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN--------CRRIYKKCQ  109 (537)
T ss_dssp             TCCCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSS--------CSSCSSCCS
T ss_pred             CCCcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCcccccc--------CCCCCCccc
Confidence            44555543 55556632 33322    789999 9999999999999999999999998        765555553

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.001  Score=71.27  Aligned_cols=231  Identities=10%  Similarity=0.040  Sum_probs=137.0

Q ss_pred             cceEEeecCCCce---EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CCceEEEEeCCCCCccceeeec
Q psy8875         483 HDIRKISLDHHEM---TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GSERTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       483 ~~I~~i~l~~~~~---~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~~~~~~~~~~~~~p~glAvD~  556 (734)
                      ..|+..++.....   .........+.+++|.+....|+.. ...+.|+..++..   +......+......+..|++.+
T Consensus        45 ~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  123 (416)
T 2pm9_A           45 SSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGA-LDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNA  123 (416)
T ss_dssp             CCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEE-ESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECS
T ss_pred             CeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEE-ccCCeEEEeecccccccccchhhccCCccceEEEEEcC
Confidence            3455555554331   1112334567899998866555544 4567788887774   1222233333345677888887


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCc------eEEEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTM------RKVLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM  627 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~------~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~  627 (734)
                      ..++++++-...+.|.+.++....      ....+   .........|++.|..+.++++-. ..+.|...++.......
T Consensus       124 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~  202 (416)
T 2pm9_A          124 KQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-SSNFASIWDLKAKKEVI  202 (416)
T ss_dssp             SSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-SSSCEEEEETTTTEEEE
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-CCCCEEEEECCCCCcce
Confidence            656677777777899999887654      22211   223456789999987566666653 34678777776544433


Q ss_pred             EEEcC------CCCceeEEEecCCCeEEEEeCCCC---eEEEEecCCCc-eEEEEcCCCCCCCCeEEEEE--CCEEEEEe
Q psy8875         628 VIVSD------IKWPNGLTLDLVQRRLYWVDAKLN---EISSCDYNGGN-RRLVLYSPQTLSHPFSISTF--EDWLYWSD  695 (734)
Q Consensus       628 lv~~~------l~~P~glavD~~~~~LYw~D~~~~---~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~--~~~lywtd  695 (734)
                      .+...      ......|++.+.+..++++-...+   .|...++.... ....+. ........+|++.  ++.++++-
T Consensus       203 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~  281 (416)
T 2pm9_A          203 HLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-QGHQKGILSLDWCHQDEHLLLSS  281 (416)
T ss_dssp             EECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC-SCCSSCEEEEEECSSCSSCEEEE
T ss_pred             EEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee-cCccCceeEEEeCCCCCCeEEEE
Confidence            33322      345688999877655555554444   78888876532 211111 0122345667773  45566665


Q ss_pred             CCCCceEEEeccCCCceEEEe
Q psy8875         696 WQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       696 ~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ...+.|...+..+++.+..+.
T Consensus       282 ~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          282 GRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             ESSSEEEEECSSSCCEEEEEE
T ss_pred             eCCCCEEEeeCCCCccceeec
Confidence            556777777777777666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.84  E-value=0.00089  Score=71.24  Aligned_cols=183  Identities=11%  Similarity=-0.014  Sum_probs=104.9

Q ss_pred             CCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCCcEEEEeCC-C----CeEEEEeCCCCceEEEEcCC-CCCceeEE
Q psy8875         524 EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYSHIYWTDAH-K----NTIELANFEGTMRKVLVRSY-LDEPRSLA  596 (734)
Q Consensus       524 ~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~~lY~td~~-~----~~I~~~~ldG~~~~~l~~~~-l~~P~~ia  596 (734)
                      ...|+.+++.++.... +.. ....+..+++.+ .++.|+++... .    .+|+++++++...+.+.... ...+..++
T Consensus       167 ~~~l~~~d~~~g~~~~-~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~  244 (396)
T 3c5m_A          167 TCRLIKVDIETGELEV-IHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF  244 (396)
T ss_dssp             CEEEEEEETTTCCEEE-EEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE
T ss_pred             cceEEEEECCCCcEEe-ecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE
Confidence            3467888877544333 322 233455677776 45667666433 2    47999999887655554321 22466789


Q ss_pred             EeCCCCeEEEEec-CCCce--EEEeccCCCceEEEEEcCCCCceeEEEec-CCCeEEEEe---------------CCCCe
Q psy8875         597 LNPIDGWMYWSDW-GQNAK--IERAGMDGSHRNMVIVSDIKWPNGLTLDL-VQRRLYWVD---------------AKLNE  657 (734)
Q Consensus       597 vD~~~g~LYwtd~-~~~~~--I~~~~ldG~~~~~lv~~~l~~P~glavD~-~~~~LYw~D---------------~~~~~  657 (734)
                      +.|...+|+++.. .....  |++.++++...+.+....  ... +++.+ .+..|+++.               .....
T Consensus       245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~  321 (396)
T 3c5m_A          245 WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPF  321 (396)
T ss_dssp             ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCE
T ss_pred             ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCc
Confidence            9988777777643 22234  999998766555444322  112 67766 455554432               13468


Q ss_pred             EEEEecCCCceEEEEcCCCCCC--------CCeEEEE--ECCEEEEEeCC--CCceEEEeccCCCc
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLS--------HPFSIST--FEDWLYWSDWQ--QKAIYKANKFTGDN  711 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~--------~P~gl~v--~~~~lywtd~~--~~~v~~~~~~~G~~  711 (734)
                      |+.+++.+...+.+......+.        ....+++  .+.+|+++...  ...|++++..++..
T Consensus       322 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          322 LYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             EEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             EEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence            9999988776655544221110        1222334  45678877643  34688887654443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.83  E-value=0.028  Score=57.50  Aligned_cols=228  Identities=8%  Similarity=-0.005  Sum_probs=129.4

Q ss_pred             ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++........+ .....+.+++|.+..+.| .+-...+.|...++..+..... +......+..+++.+....
T Consensus        44 dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~~~d~~i~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  121 (312)
T 4ery_A           44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL-VSASDDKTLKIWDVSSGKCLKT-LKGHSNYVFCCNFNPQSNL  121 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSE
T ss_pred             CCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEE-EEECCCCEEEEEECCCCcEEEE-EcCCCCCEEEEEEcCCCCE
Confidence            344555555444443333 344567889999865544 4545678888888875543333 3333445677888865554


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGL  639 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~gl  639 (734)
                      | ++-...+.|.+.++........+.........+++.|...+|+....  .+.|...++..... ..+..........+
T Consensus       122 l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  198 (312)
T 4ery_A          122 I-VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY--DGLCRIWDTASGQCLKTLIDDDNPPVSFV  198 (312)
T ss_dssp             E-EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCSSCCCEEEE
T ss_pred             E-EEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeeEEeccCCCceEEE
Confidence            4 44455688999998755444444444456788999986666655543  45677777654332 22322223334668


Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       640 avD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++++.+..|+.+. ..+.|...++........+.............+  .++.++++-...+.|+..+..+++.+..+
T Consensus       199 ~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~  275 (312)
T 4ery_A          199 KFSPNGKYILAAT-LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL  275 (312)
T ss_dssp             EECTTSSEEEEEE-TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEEc-CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh
Confidence            8886666665544 457888888765544333332211111111122  34555555555566666666666555544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.82  E-value=0.026  Score=58.51  Aligned_cols=206  Identities=14%  Similarity=0.020  Sum_probs=127.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.++++.+. +.+..+-...+.|+..++..+..... +......+..+++.+.++ ++++-...+.|.+.++.....
T Consensus        80 ~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~~~~~~~~~-~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           80 QLGVVSVDISHT-LPIAASSSLDAHIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKK  156 (321)
T ss_dssp             SSCEEEEEECSS-SSEEEEEETTSEEEEEETTTTEEEEE-EECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSE
T ss_pred             CCCEEEEEECCC-CCEEEEEeCCCcEEEEECCCCCEEEE-EeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCce
Confidence            446778888764 44555666778888888875543333 333445567888886554 445555678999999876655


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      ...+.........+++.|...+|.....  .+.|...++........+.........|++.+.+..| ++-...+.|...
T Consensus       157 ~~~~~~~~~~v~~~~~spdg~~lasg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~dg~i~iw  233 (321)
T 3ow8_A          157 EYSLDTRGKFILSIAYSPDGKYLASGAI--DGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLL-VTASDDGYIKIY  233 (321)
T ss_dssp             EEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEE-EEECTTSCEEEE
T ss_pred             eEEecCCCceEEEEEECCCCCEEEEEcC--CCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEE-EEEcCCCeEEEE
Confidence            5555455566789999987666665542  4667777765443333333333446789998655555 454556788888


Q ss_pred             ecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         662 DYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       662 ~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++........+..  .......|++. .+.++++-...+.|...+..+++.+..+
T Consensus       234 d~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          234 DVQHANLAGTLSG--HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             ETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ECCCcceeEEEcC--CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            8776554444432  23345567773 3444455445566766676666655554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.82  E-value=0.0063  Score=64.53  Aligned_cols=210  Identities=8%  Similarity=-0.004  Sum_probs=135.2

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      ....+.+|+|.+....++++-...+.|...++..+.....+.. .....+..|++.+..++++++-...+.|.+.++.+.
T Consensus        72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  151 (383)
T 3ei3_B           72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS  151 (383)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC
T ss_pred             CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC
Confidence            3456788999986635666666678898888885554433321 233456678887645566666666789999999986


Q ss_pred             ceEEEEcCC--CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         580 MRKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       580 ~~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      ....+....  ......+++.|...+|+...  ..+.|...++.+.....+ .........|++.+.+..++++-...+.
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEETTSCEEEEE-ECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEECCCCEEEEe-ccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence            666555332  24578999999777666665  347888888876544433 3344567889998776646666666778


Q ss_pred             EEEEecCC----CceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         658 ISSCDYNG----GNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       658 I~~~~~dG----~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |...++..    ......+.   ......+|++.  .+.++++-...+.|...+..+++....+.
T Consensus       229 i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  290 (383)
T 3ei3_B          229 VKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQII  290 (383)
T ss_dssp             EEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEE
T ss_pred             EEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccc
Confidence            88888764    22222221   23445677774  34455555555778888877777655443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.0035  Score=66.96  Aligned_cols=219  Identities=5%  Similarity=-0.119  Sum_probs=129.5

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCC-------------
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTI-------------  548 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~-------------  548 (734)
                      ...|+..+..+.....+......+.+++|.+....|+.. ...+.|+..++..+..... +......             
T Consensus       129 dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  206 (425)
T 1r5m_A          129 NGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVMQH-FELKETGGSSINAENHSGDG  206 (425)
T ss_dssp             TSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEEEE-ECCC---------------C
T ss_pred             CCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEEEE-eeccccCccceeeccccCCc
Confidence            345666665555555554455678899998866666554 4567888888874433222 2211111             


Q ss_pred             --ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         549 --ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       549 --p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                        +..+++.+  +..+++-...+.|.+.++........+.........|++.|...+|+.+..  .+.|...++......
T Consensus       207 ~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~  282 (425)
T 1r5m_A          207 SLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD--DGTLRIWHGGNGNSQ  282 (425)
T ss_dssp             CCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEEECSSSBSCS
T ss_pred             ceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC--CCEEEEEECCCCccc
Confidence              55566653  345666666788999998765544444445566789999987666666552  466777776544333


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~  705 (734)
                      ..+.........|++.+.+  ++++-...+.|...++........+..  .......|++. .+.++++-...+.|...+
T Consensus       283 ~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~  358 (425)
T 1r5m_A          283 NCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFMDGQVNVYD  358 (425)
T ss_dssp             EEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            3333344456788887655  555555668899888865544443332  12345566663 344444444456666666


Q ss_pred             ccCCC
Q psy8875         706 KFTGD  710 (734)
Q Consensus       706 ~~~G~  710 (734)
                      ..+++
T Consensus       359 ~~~~~  363 (425)
T 1r5m_A          359 LKKLN  363 (425)
T ss_dssp             CHHHH
T ss_pred             CCCCc
Confidence            55554

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=97.81  E-value=1.2e-05  Score=67.30  Aligned_cols=41  Identities=22%  Similarity=0.545  Sum_probs=30.5

Q ss_pred             cccccccCCCCCcCccccCC--CcceeecCCCcEecCCCCccc-cccC
Q psy8875         388 GVDECAKDNGGCLHKCVDLP--VGYMCECNEGYKLSSNRHTCI-DIDE  432 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~--~~~~C~C~~G~~l~~~~~~C~-~~~e  432 (734)
                      ++++|..++..-...|++++  ++|+|.|++||    .|+.|+ ++||
T Consensus        47 ~~~~C~~~pC~ngg~C~~~~~~~~~~C~C~~G~----~G~~Ce~~ide   90 (91)
T 1tpg_A           47 PVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGF----AGKSCEIDTRA   90 (91)
T ss_dssp             CEEECSSCCSCTTCEEEEESSSSCEEEECCTTC----BSSSCCBCSSC
T ss_pred             cCCcccCCCCCCCCEeecCCCCCCeEeECCCCC----cCCcCCcCCCC
Confidence            36778765433335799987  99999999999    578886 6664

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.80  E-value=1.2e-05  Score=89.95  Aligned_cols=92  Identities=27%  Similarity=0.698  Sum_probs=61.1

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCC-Cccccccc-CcccC-----Cceecc-CCCCeeeCCCCCCCCCCCCCCC
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDG-VDEKKCQK-RICGQ-----EEFTCR-SSPGECVPLTWMCDDNPDCSDG  124 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg-~de~~C~~-~~C~~-----~~~~C~-~~~~~Ci~~~~~Cdg~~dC~dg  124 (734)
                      +|. ..+|+-   +.|...... |...|+.. .|++.|.. ..|..     .+|+|. +  |+|||..|+|||..||.||
T Consensus        22 ~C~-~~~~R~---R~v~~p~q~-gG~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~--g~Ci~~~~~Cdg~~dC~d~   94 (554)
T 3ojy_A           22 PCQ-DKKYRH---RSLLQPNKF-GGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKET--GRCLKRHLVCNGDQDCLDG   94 (554)
T ss_dssp             TTT-CEEEEE---CCEEECBCS-SCCCCCSCSEEEEECCCCCCC--CCCCSSSEECSSS--CCEECGGGTTSSSCCSSSC
T ss_pred             CCC-CccEee---Eeecccccc-CCCCCCCccccccCCCCCCCCcccCCCCCcCccCCC--CEEcccccccCCcccCCCc
Confidence            354 444443   556555544 44568765 67777854 34432     689998 5  6999999999999999999


Q ss_pred             CCcCCCCCCCcccccCcCCCCceEeCccc
Q psy8875         125 SDEKSCKNRTCQASEFRCGNNRCIPNHWQ  153 (734)
Q Consensus       125 ~de~~C~~~~C~~~~f~C~~g~Ci~~~~~  153 (734)
                      +||.+|..  .....+.|.....||..++
T Consensus        95 sDE~~C~~--~~~~~~~C~~~~~iPg~~l  121 (554)
T 3ojy_A           95 SDEDDCED--VRAIDEDCSQYEPIPGSQK  121 (554)
T ss_dssp             TTSSSCCS--CCCCCTTTTTSCBCTTHHH
T ss_pred             cccccCCC--CCCCccccccccccCcccc
Confidence            99999953  2223456765556665443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.78  E-value=0.021  Score=59.36  Aligned_cols=219  Identities=8%  Similarity=-0.089  Sum_probs=126.5

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCc------------eEEEEeCC
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSE------------RTVVIEED  545 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~------------~~~~~~~~  545 (734)
                      +..|+..++..............+..++|.+....|+.....    .+.|...++..+..            ..+.....
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (369)
T 3zwl_B           95 DYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEG  174 (369)
T ss_dssp             TTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTT
T ss_pred             CCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcC
Confidence            445777777665554444455678889999866666555432    15666665543321            11111111


Q ss_pred             CCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      ...+..+++.+.+..|+.+. ..+.|.+.++.. ......+......+..+++.|...+|+.+.  ..+.|...++....
T Consensus       175 ~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~  251 (369)
T 3zwl_B          175 LDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS--RDTNSFLVDVSTLQ  251 (369)
T ss_dssp             CCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCC
T ss_pred             ccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec--CCceEEEEECCCCc
Confidence            22567788887666665554 468899999976 333334444556788999998766666654  24678887776544


Q ss_pred             eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC-------------eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCE
Q psy8875         625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN-------------EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDW  690 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~-------------~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~  690 (734)
                      ....+. .-.....+++.+.+..|+.+.....             .|...++........+..  ......+|++. .+.
T Consensus       252 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~  328 (369)
T 3zwl_B          252 VLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG--HFGPLNTVAISPQGT  328 (369)
T ss_dssp             EEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSS
T ss_pred             eeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec--ccCcEEEEEECCCCC
Confidence            433333 3345678899888888887765432             566666554443333332  23345567773 344


Q ss_pred             EEEEeCCCCceEEEec
Q psy8875         691 LYWSDWQQKAIYKANK  706 (734)
Q Consensus       691 lywtd~~~~~v~~~~~  706 (734)
                      ++++-...+.|...+.
T Consensus       329 ~l~s~~~dg~v~iw~~  344 (369)
T 3zwl_B          329 SYASGGEDGFIRLHHF  344 (369)
T ss_dssp             EEEEEETTSEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEC
Confidence            4444444455554443

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=97.78  E-value=4.1e-05  Score=87.58  Aligned_cols=149  Identities=21%  Similarity=0.452  Sum_probs=88.1

Q ss_pred             CCCCCCCCCCcCCCCCC----------Cccccc--CcCC-CCceEeCccccCCCCCCC----CCCCCCCCCcc-Cccccc
Q psy8875         117 DNPDCSDGSDEKSCKNR----------TCQASE--FRCG-NNRCIPNHWQCDGEFDCS----DKSDEDPEMCN-GVNHCA  178 (734)
Q Consensus       117 g~~dC~dg~de~~C~~~----------~C~~~~--f~C~-~g~Ci~~~~~Cdg~~dC~----dgsde~~~~C~-~~~~C~  178 (734)
                      |...|..|+.+..|+..          .|....  -.|. +|+|+.      |...|.    .|+.+..  |+ ++++|.
T Consensus       458 G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~------g~C~C~~~~~~Gy~G~~--Ce~~~~~C~  529 (690)
T 3fcs_B          458 GVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC------GQCVCHSSDFGKITGKY--CECDDFSCV  529 (690)
T ss_dssp             TEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS------SSEEECCCSSCCCBSTT--SCBCSSCCC
T ss_pred             CceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC------CeeEeecCCCCCeeCCC--cCcccCcCc
Confidence            55678888888888432          255422  2465 467874      455566    6776655  43 233342


Q ss_pred             cCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCc--cccccCCCCCCCCCCceee-CCCceecCcCCCCCCCCC-CC
Q psy8875         179 AVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDL--LMCAEAGSKPCRNSTMFRC-TGGMCIPSTWVCDGQNDC-PD  254 (734)
Q Consensus       179 ~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~--~~~~~~~~~~C~~~~~~~C-~~g~Ci~~~~~Cdg~~dC-~d  254 (734)
                      ..   -...|.+.+.|..    +.|.|++||.|..|+  ....     .|.......| ++|+|+..  .|.    | ..
T Consensus       530 ~~---~~~~C~~~G~C~~----g~C~C~~Gy~G~~CeC~~~~~-----~C~~~~g~~C~~~G~C~~g--~C~----C~~~  591 (690)
T 3fcs_B          530 RY---KGEMCSGHGQCSC----GDCLCDSDWTGYYCNCTTRTD-----TCMSSNGLLCSGRGKCECG--SCV----CIQP  591 (690)
T ss_dssp             BS---SSSBGGGSEEEET----TEEEECTTEESSSSCEECCCT-----TTBCTTSSBTSSSCEEETT--EEE----CCST
T ss_pred             CC---CCCCCCCCCEecC----CeeECcCCCcCCCCccCCCCC-----cccCCCCCCCCCCCEEeCC--EEE----CCCC
Confidence            11   0136777777754    789999999999887  2112     3321112233 24566542  455    8 88


Q ss_pred             CCCCCCCCC--CCCCCceecCCC-CeecCCcccCCCCCCCCCCCCCCCCCCCC
Q psy8875         255 GVDEKKCHE--TCRSDEFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQPVKC  304 (734)
Q Consensus       255 g~de~~C~~--~C~~~~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~~~C  304 (734)
                      |+.+..|+.  .|+   -.|.++ .|+.          |..++.+..|....|
T Consensus       592 Gy~G~~Ce~C~~C~---~~C~~~g~Cv~----------C~~g~tG~~C~~~~C  631 (690)
T 3fcs_B          592 GSYGDTCEKCPTCP---DACTFKKECVE----------CKKFDRGALHDENTC  631 (690)
T ss_dssp             TCBSTTSCBCTTSC---CTTTSCCGGGT----------TTTTCCSSSSSSSCS
T ss_pred             CccCCCcCcCCCCC---CCCCCCCCccc----------CCCCCccCCCCcccc
Confidence            888888874  452   237665 7763          777777776664444

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.78  E-value=0.015  Score=65.22  Aligned_cols=222  Identities=13%  Similarity=0.079  Sum_probs=137.8

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      +..|+..++++.....+......+.++++.+....|. +-...+.|...+.. +.....+ ......+.+|++.+.++.|
T Consensus       324 d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~dg~v~~~~~~-~~~~~~~-~~~~~~v~~~~~s~dg~~l  400 (577)
T 2ymu_A          324 DKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA-SASDDKTVKLWNRN-GQLLQTL-TGHSSSVRGVAFSPDGQTI  400 (577)
T ss_dssp             TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETT-CCEEEEE-ECCSSCEEEEEECTTSSCE
T ss_pred             CCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEE-EEeCCCEEEEEcCC-CCEEEEe-cCCCCCeEEEEECCCCCEE
Confidence            3456666676666655555556778899988655554 44456777777765 3333333 3334567889998766666


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav  641 (734)
                      ..+. ..+.|.+.+.++.....+. .......+|++.|...+|....  ..+.|...++++.....+. ........|++
T Consensus       401 ~~~~-~d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~~~~~~~~-~~~~~v~~~~~  475 (577)
T 2ymu_A          401 ASAS-DDKTVKLWNRNGQLLQTLT-GHSSSVWGVAFSPDDQTIASAS--DDKTVKLWNRNGQLLQTLT-GHSSSVRGVAF  475 (577)
T ss_dssp             EEEE-TTSEEEEECTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTSCEEEEEE-CCSSCEEEEEE
T ss_pred             EEEe-CCCEEEEEeCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEc--CCCEEEEEECCCCEEEEEc-CCCCCEEEEEE
Confidence            5544 4578999998887666554 3445678899998766666554  2467777777776554443 33445678999


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .+.+..|..+ ...+.|...+.+|...+.+..   ......+|++. .+++.++-...+.|...+ .+|+.+..+.
T Consensus       476 spd~~~las~-~~d~~i~iw~~~~~~~~~~~~---h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd-~~~~~~~~~~  546 (577)
T 2ymu_A          476 SPDGQTIASA-SDDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT  546 (577)
T ss_dssp             CTTSCEEEEE-ETTSEEEEEETTSCEEEEEEC---CSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEE
T ss_pred             cCCCCEEEEE-eCCCEEEEEcCCCCEEEEEeC---CCCCEEEEEEcCCCCEEEEEECcCEEEEEe-CCCCEEEEEc
Confidence            8766655544 345678888888876666542   22345667773 344444433445565555 4666655554

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=97.77  E-value=0.0059  Score=62.83  Aligned_cols=200  Identities=11%  Similarity=0.022  Sum_probs=118.4

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce---EEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER---TVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF  576 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~---~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l  576 (734)
                      ....+.+++|.+....|+...  .+.|...++..+...   ..+. ......+..+++.+.++.|+.. ...+.|.+.++
T Consensus        50 h~~~v~~~~~~~~~~~l~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~  126 (337)
T 1gxr_A           50 HGEVVCAVTISNPTRHVYTGG--KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDL  126 (337)
T ss_dssp             CSSCCCEEEECSSSSEEEEEC--BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEEC
T ss_pred             CCCceEEEEEecCCcEEEEcC--CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEE-cCCCcEEEEEC
Confidence            344567888887666555543  778888887644321   1111 1233456788888765555554 44688999998


Q ss_pred             CCCce--EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875         577 EGTMR--KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       577 dG~~~--~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~  654 (734)
                      .....  ...+.........+++.|...+|+....  .+.|...++........+.........|++.+.+..|+.+. .
T Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~  203 (337)
T 1gxr_A          127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG-L  203 (337)
T ss_dssp             CCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-T
T ss_pred             CCCCcceeeecccCCCceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe-c
Confidence            76652  2233344556789999987666776653  46787777765544434434445678899987666666554 5


Q ss_pred             CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCC
Q psy8875         655 LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       655 ~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+.|...++...........   ......+++.  +..|+... ..+.|...+..+++
T Consensus       204 dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~  257 (337)
T 1gxr_A          204 DNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPD  257 (337)
T ss_dssp             TSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSC
T ss_pred             CCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCC
Confidence            67888888876554433321   2334556662  33344333 34556655554443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=97.76  E-value=0.012  Score=64.31  Aligned_cols=222  Identities=9%  Similarity=-0.016  Sum_probs=131.7

Q ss_pred             cceEEeecC--CCceEEEe---cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE----EEEeCCCCCcccee
Q psy8875         483 HDIRKISLD--HHEMTAIV---NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT----VVIEEDKTIADGLA  553 (734)
Q Consensus       483 ~~I~~i~l~--~~~~~~l~---~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~----~~~~~~~~~p~glA  553 (734)
                      ..|+..++.  .......+   .....+.+|+|.+....|+..+ ..+.|+.+++..+....    .+. .....+..|+
T Consensus       125 g~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~  202 (450)
T 2vdu_B          125 KSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIAD-KFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDVH  202 (450)
T ss_dssp             TEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEEE
T ss_pred             CeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEe-CCCcEEEEecCCcccccccceeee-cccCceEEEE
Confidence            455555555  33333332   2345678999998777777665 46788888876443321    111 1234567888


Q ss_pred             eecc--CCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         554 VDWI--YSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       554 vD~~--~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +.+.  .+.++++-...+.|.+.++.... ...++......+..+++. ...+|+...  ..+.|...++........+.
T Consensus       203 ~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~--~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          203 LIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG--GDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE--SSSEEEEEETTTCCEEEEEE
T ss_pred             EcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe--CCCeEEEEECCCCcEeeeec
Confidence            8876  14444454456889998886443 334344455677899998 444555443  34677777775443322222


Q ss_pred             c-------------------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEec--CCC-ceEEEEcCCCCCCCCe
Q psy8875         631 S-------------------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDY--NGG-NRRLVLYSPQTLSHPF  682 (734)
Q Consensus       631 ~-------------------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~--dG~-~~~~i~~~~~~~~~P~  682 (734)
                      .                         .-....+|++.+.+..||.+....+.|...++  ... ..+.+..-.. -..+.
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~-~~~v~  358 (450)
T 2vdu_B          280 YNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITF-PYNVI  358 (450)
T ss_dssp             CHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEEC-SSCEE
T ss_pred             chhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEecc-CCceE
Confidence            1                         01234678888778888888766778888777  322 2222211111 15678


Q ss_pred             EEEEECCEEEEEeCCCC---------ceEEEeccCCC
Q psy8875         683 SISTFEDWLYWSDWQQK---------AIYKANKFTGD  710 (734)
Q Consensus       683 gl~v~~~~lywtd~~~~---------~v~~~~~~~G~  710 (734)
                      +|++..+.+|++-....         .|+.++..+|+
T Consensus       359 ~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~  395 (450)
T 2vdu_B          359 SLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENS  395 (450)
T ss_dssp             EEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTE
T ss_pred             EEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCe
Confidence            89998888888754321         67777665554

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.76  E-value=0.00054  Score=77.81  Aligned_cols=174  Identities=11%  Similarity=0.039  Sum_probs=112.1

Q ss_pred             cCCCceEEEecCC-cceEEEeeeccCCeEEEEEe--C--CCcEEEEec--CCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875         490 LDHHEMTAIVNST-KSATAIDFVFRTGMIFWSDI--S--EKKIYKAPI--DEGSERTVVIEEDKTIADGLAVDWIYSHIY  562 (734)
Q Consensus       490 l~~~~~~~l~~~~-~~~~~i~~d~~~~~lyw~d~--~--~~~I~~~~l--~~g~~~~~~~~~~~~~p~glAvD~~~~~lY  562 (734)
                      +++.....+.... ....+++|.+. ..||+++.  .  ...|+.+++  + +... .+.  .......+++.+..+.++
T Consensus        51 ~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~-g~~~-~l~--~~~~~~~~~~s~dg~~~~  125 (582)
T 3o4h_A           51 YDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP-GEEQ-RLE--AVKPMRILSGVDTGEAVV  125 (582)
T ss_dssp             EETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST-TCCE-ECT--TSCSBEEEEEEECSSCEE
T ss_pred             EcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC-Cccc-ccc--CCCCceeeeeCCCCCeEE
Confidence            4555555554433 35677888876 78888876  2  236788887  5 3333 221  222344556666676666


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      ++....+.+.+.++++...+.+.....   ..++++|...+|+++...  ....|++.++++...+.+. ........++
T Consensus       126 ~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~  201 (582)
T 3o4h_A          126 FTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSAS  201 (582)
T ss_dssp             EEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEE
T ss_pred             EEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccce
Confidence            665555555577887766655553322   788999988888876532  2257999998876666553 3334457899


Q ss_pred             EecCCCeEEEEeCCC-CeEEEEecCCCceEEEEc
Q psy8875         641 LDLVQRRLYWVDAKL-NEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       641 vD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~i~~  673 (734)
                      +.+.+.+||.++... ..|+.+++++...+ ++.
T Consensus       202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          202 ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            998888899655432 38999999988777 443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.76  E-value=0.0048  Score=64.39  Aligned_cols=207  Identities=12%  Similarity=0.014  Sum_probs=119.1

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCccceeeecc
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI  557 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~  557 (734)
                      ...|+.+++.+.....+    ..+..++|.+..++|+++...    ...|+.++++++..+.+... . . +..+++.+.
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~-~-~~~~~wspd  114 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K-N-IRSLEWNED  114 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S-E-EEEEEECTT
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C-C-ccceeECCC
Confidence            34577777777665554    456778899888888887643    23588888885443333222 2 2 667777777


Q ss_pred             CCcEEEEeCC--------------------------CCeEEEEeCCCCce-EEEEcCCCCCceeEEEeCCCCeEEEEecC
Q psy8875         558 YSHIYWTDAH--------------------------KNTIELANFEGTMR-KVLVRSYLDEPRSLALNPIDGWMYWSDWG  610 (734)
Q Consensus       558 ~~~lY~td~~--------------------------~~~I~~~~ldG~~~-~~l~~~~l~~P~~iavD~~~g~LYwtd~~  610 (734)
                      ++.|+++...                          ...|++.++.+... +.+.. .  ....+++.|.. .+|.+...
T Consensus       115 g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          115 SRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             SSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECC
T ss_pred             CCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecc
Confidence            7778887521                          35788899977665 44543 2  67788998865 55555432


Q ss_pred             C-------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC-------CCeEEEEecCCCceEEEEcCCC
Q psy8875         611 Q-------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK-------LNEISSCDYNGGNRRLVLYSPQ  676 (734)
Q Consensus       611 ~-------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~-------~~~I~~~~~dG~~~~~i~~~~~  676 (734)
                      .       ...|+..+ .|. .+.+...  ....  .+.+.+++|+++...       ...|+.++ .| ..+.+...  
T Consensus       191 ~~~~~~~~~~~l~~~d-~~~-~~~l~~~--~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~-~~~~l~~~--  260 (347)
T 2gop_A          191 EIIPQYFKFWDIYIWE-DGK-EEKMFEK--VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK-EVMGILDE--  260 (347)
T ss_dssp             CSSCCSSCCEEEEEEE-TTE-EEEEEEE--ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS-CEEESSTT--
T ss_pred             cccccccccccEEEeC-CCc-eEEeccC--ccee--eECCCCCEEEEEEccccCCccccceEEEEC-CC-ceEecccc--
Confidence            1       34788887 443 3334332  2222  236667778777532       35788887 33 33333321  


Q ss_pred             CCCCC-eE-EEEECCEEEEEeC--CCCceEEEeccCCCceEE
Q psy8875         677 TLSHP-FS-ISTFEDWLYWSDW--QQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       677 ~~~~P-~g-l~v~~~~lywtd~--~~~~v~~~~~~~G~~~~~  714 (734)
                       .... .. +.+. +.||++..  +...|+ ++  +|+...+
T Consensus       261 -~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~--~g~~~~~  297 (347)
T 2gop_A          261 -VDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW--DGEIKPI  297 (347)
T ss_dssp             -CCSEEEEEEEET-TEEEEEEEETTEEEEE-EE--SSSEEEE
T ss_pred             -CCcccCCccEEc-CcEEEEEecCCcEEEE-Ec--CCceEEE
Confidence             1122 22 4444 44666533  233556 55  4554333

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=97.75  E-value=0.0017  Score=69.54  Aligned_cols=226  Identities=9%  Similarity=0.006  Sum_probs=135.6

Q ss_pred             ccceEEeecCC----C-ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEE--EeCCCCC
Q psy8875         482 KHDIRKISLDH----H-EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVV--IEEDKTI  548 (734)
Q Consensus       482 ~~~I~~i~l~~----~-~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~--~~~~~~~  548 (734)
                      ...|+..++..    . ....+......+..|+|.+..+.++++-...+.|+..++..+.      ....+  .......
T Consensus        88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  167 (416)
T 2pm9_A           88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE  167 (416)
T ss_dssp             SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred             CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence            34566666554    2 2222333445678899988746666666677888888887544      11111  1112345


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC------CCCceeEEEeCCCCeEEEEecCCCc---eEEEec
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY------LDEPRSLALNPIDGWMYWSDWGQNA---KIERAG  619 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~------l~~P~~iavD~~~g~LYwtd~~~~~---~I~~~~  619 (734)
                      +..|++.+..+.++++-...+.|.+.++........+...      ...+..+++.|....++++-... +   .|...+
T Consensus       168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-~~~~~i~~~d  246 (416)
T 2pm9_A          168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS-DNDPSILIWD  246 (416)
T ss_dssp             CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC-SSSCCCCEEE
T ss_pred             eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC-CCCceEEEEe
Confidence            6788888776788888777889999999776554444333      46688999999765555554322 2   566666


Q ss_pred             cCCC-ceEEEEE-cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-C-EEEEEe
Q psy8875         620 MDGS-HRNMVIV-SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-D-WLYWSD  695 (734)
Q Consensus       620 ldG~-~~~~lv~-~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~-~lywtd  695 (734)
                      +... .....+. ........|++.+..+.++++-...+.|...++........+..  ......+|++.. + .++++-
T Consensus       247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA--RGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC--SSSCCCCEEECTTCTTEEEEC
T ss_pred             CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC--CCCceEEEEECCCCCCEEEEE
Confidence            6542 2211222 23345678888874555555655678898888765544333332  223455677743 3 566666


Q ss_pred             CCCCceEEEeccCCC
Q psy8875         696 WQQKAIYKANKFTGD  710 (734)
Q Consensus       696 ~~~~~v~~~~~~~G~  710 (734)
                      ...+.|...+..+++
T Consensus       325 ~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          325 SFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CSSSEEEEEESCCCC
T ss_pred             ecCCcEEEEEccCCC
Confidence            666777666655544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.73  E-value=0.011  Score=62.14  Aligned_cols=197  Identities=8%  Similarity=-0.064  Sum_probs=121.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|.+... +..+-...+.|+..++..+..... +......+..+++.+....++.+-...+.|.+.++.....
T Consensus       127 ~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~-~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          127 DDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSS-YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             SSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             CCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEE-EcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence            45678999988554 445555678888888875433322 3323455678888877778888877788999998865433


Q ss_pred             -EEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         582 -KVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       582 -~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                       ..+. ......+..+++.|..+.++.+-. ..+.|...++........+.......+.|++.+.+.++..+-+..+.|.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~  283 (344)
T 4gqb_B          205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA  283 (344)
T ss_dssp             EEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             eeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence             3322 223345788999998888877653 3467777776543332233344455678898876666666655667888


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEE
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~  704 (734)
                      ..++.......+ .  .......+|++.  +.+|+.+-...+.|+.-
T Consensus       284 vwd~~~~~~~~~-~--~H~~~V~~v~~sp~~~~llas~s~D~~v~~w  327 (344)
T 4gqb_B          284 VLDSSLSELFRS-Q--AHRDFVRDATWSPLNHSLLTTVGWDHQVVHH  327 (344)
T ss_dssp             EECTTCCEEEEE-C--CCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred             EEECCCCcEEEE-c--CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence            878765543322 1  223344667763  44566655444555443

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.72  E-value=0.014  Score=61.87  Aligned_cols=202  Identities=10%  Similarity=0.006  Sum_probs=118.8

Q ss_pred             cceEEEeee----ccCCeEEEEEeCCCcEEEEecCC------CCceE-----EEE------eCCCCCccceeeeccCCcE
Q psy8875         503 KSATAIDFV----FRTGMIFWSDISEKKIYKAPIDE------GSERT-----VVI------EEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       503 ~~~~~i~~d----~~~~~lyw~d~~~~~I~~~~l~~------g~~~~-----~~~------~~~~~~p~glAvD~~~~~l  561 (734)
                      ..+.+++|.    +....++++-...+.|+..++..      +....     .+.      ......+..|++.+.+  +
T Consensus       122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~  199 (397)
T 1sq9_A          122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--L  199 (397)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--E
T ss_pred             CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--e
Confidence            678899998    76666244545667777777664      22221     221      2234457788888655  6


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcC---C---CCCceeEEEeCCCCeEEEEecCCC---ceEEEeccCCCceEEEEEc-
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRS---Y---LDEPRSLALNPIDGWMYWSDWGQN---AKIERAGMDGSHRNMVIVS-  631 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~---~---l~~P~~iavD~~~g~LYwtd~~~~---~~I~~~~ldG~~~~~lv~~-  631 (734)
                      +++-...+.|.+.++........+..   .   ...+..|+++|...+|+....  .   +.|...++........+.. 
T Consensus       200 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~--d~~~g~i~i~d~~~~~~~~~~~~~  277 (397)
T 1sq9_A          200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD--SNSFGCITLYETEFGERIGSLSVP  277 (397)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE--ETTEEEEEEEETTTCCEEEEECBC
T ss_pred             EEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec--CCCCceEEEEECCCCcccceeccC
Confidence            66666778999999875544444433   3   567889999987666665542  3   5777777754433333333 


Q ss_pred             ------------CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC----CC---------------CCC
Q psy8875         632 ------------DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP----QT---------------LSH  680 (734)
Q Consensus       632 ------------~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~----~~---------------~~~  680 (734)
                                  .-.....|++.+.+..|+.+ ...+.|...++........+...    ..               ...
T Consensus       278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  356 (397)
T 1sq9_A          278 THSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  356 (397)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             cccccccccccccCCcEEEEEECCCCCEEEEE-eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCc
Confidence                        33456788998666665544 45678888887655443333300    11               233


Q ss_pred             CeEEEEECC-----------EEEEEeCCCCceEEEeccCC
Q psy8875         681 PFSISTFED-----------WLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       681 P~gl~v~~~-----------~lywtd~~~~~v~~~~~~~G  709 (734)
                      ..+|++..+           .++++-...+.|...+..+|
T Consensus       357 v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          357 VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence            457777544           45555555566666555444

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.70  E-value=0.0037  Score=67.92  Aligned_cols=205  Identities=8%  Similarity=0.012  Sum_probs=131.0

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---------CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCe
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---------SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNT  570 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---------~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~  570 (734)
                      .....+..|+|.+..+.++.+-...+.|+..++...         ......+......+.+|++.+.+..++++-...+.
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~  205 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT  205 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence            344567788888765667777667788888777631         11222223334567888888776657777777899


Q ss_pred             EEEEeCCCCc---e----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC---ceEEEEEcCCCCceeEE
Q psy8875         571 IELANFEGTM---R----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS---HRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       571 I~~~~ldG~~---~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~---~~~~lv~~~l~~P~gla  640 (734)
                      |.+.++....   .    ...+......+..|++.|..+.++.+... .+.|...++...   .....+...-..++.|+
T Consensus       206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~  284 (430)
T 2xyi_A          206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVAD-DQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS  284 (430)
T ss_dssp             EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEET-TSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred             EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeC-CCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence            9999987521   1    12222445568899999977888887643 467777777543   12222334445678999


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCC-c-eEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccC
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGG-N-RRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~-~-~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~  708 (734)
                      +.+.+..++++-...+.|...++... . ...+..   ......+|++.  +..++++-...+.|...+...
T Consensus       285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~---h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFES---HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC---CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec---CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            98877778888777788999988752 2 333321   23345567773  446777776666776666544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.67  E-value=0.0095  Score=61.50  Aligned_cols=208  Identities=13%  Similarity=0.136  Sum_probs=121.7

Q ss_pred             eeeeee-ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee
Q psy8875         476 SLLFAR-KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV  554 (734)
Q Consensus       476 ~l~~~~-~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv  554 (734)
                      .+++.. ...|++++..+..............++.++. .+.||+. ...+.|++++.. |...... .........+++
T Consensus       109 ~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~vg-t~~~~l~~~d~~-g~~~~~~-~~~~~~~~~~~~  184 (330)
T 3hxj_A          109 ILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSE-DGTIYVG-SNDNYLYAINPD-GTEKWRF-KTNDAITSAASI  184 (330)
T ss_dssp             EEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT-TSCEEEE-CTTSEEEEECTT-SCEEEEE-ECSSCCCSCCEE
T ss_pred             EEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcC-CCEEEEE-cCCCEEEEECCC-CCEeEEE-ecCCCceeeeEE
Confidence            344443 4567777776433222222222222334442 5566664 345789998887 5433222 223345667788


Q ss_pred             eccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCC
Q psy8875         555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIK  634 (734)
Q Consensus       555 D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~  634 (734)
                      | ..++||++.   +.|.+.+.+|....... .....+.++++|+ .|.||++..  .+.|.+.+.+|.....+ .....
T Consensus       185 d-~~g~l~v~t---~~l~~~d~~g~~~~~~~-~~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~g~~~~~~-~~~~~  255 (330)
T 3hxj_A          185 G-KDGTIYFGS---DKVYAINPDGTEKWNFY-AGYWTVTRPAISE-DGTIYVTSL--DGHLYAINPDGTEKWRF-KTGKR  255 (330)
T ss_dssp             C-TTCCEEEES---SSEEEECTTSCEEEEEC-CSSCCCSCCEECT-TSCEEEEET--TTEEEEECTTSCEEEEE-ECSSC
T ss_pred             c-CCCEEEEEe---CEEEEECCCCcEEEEEc-cCCcceeceEECC-CCeEEEEcC--CCeEEEECCCCCEeEEe-eCCCC
Confidence            7 567888887   77888886665443332 2335578899986 578988874  36788887777654333 22233


Q ss_pred             CceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceE
Q psy8875         635 WPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIY  702 (734)
Q Consensus       635 ~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~  702 (734)
                      .+..+++| .+++||++.. .+.|.+++.+|.....+...   .....++.+ .+++||+.... +.|.
T Consensus       256 ~~~~~~~~-~~g~l~v~t~-~ggl~~~d~~g~~~~~~~~~---~~~~~~~~~d~~g~l~~gt~~-G~~~  318 (330)
T 3hxj_A          256 IESSPVIG-NTDTIYFGSY-DGHLYAINPDGTEKWNFETG---SWIIATPVIDENGTIYFGTRN-GKFY  318 (330)
T ss_dssp             CCSCCEEC-TTSCEEEECT-TCEEEEECTTSCEEEEEECS---SCCCSCCEECTTCCEEEECTT-SCEE
T ss_pred             ccccceEc-CCCeEEEecC-CCCEEEECCCCcEEEEEEcC---CccccceEEcCCCEEEEEcCC-CeEE
Confidence            35567776 5778887764 46899998876654443321   223345566 56778876643 4443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=97.66  E-value=0.036  Score=62.14  Aligned_cols=222  Identities=12%  Similarity=0.051  Sum_probs=134.2

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ...|+..+.++.....+......+.++++.+....| .+-...+.|...++.+ .... .+......+.++++.+.+..|
T Consensus       283 d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~d~~i~~w~~~~-~~~~-~~~~~~~~v~~~~~s~~g~~l  359 (577)
T 2ymu_A          283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWNRNG-QHLQ-TLTGHSSSVWGVAFSPDGQTI  359 (577)
T ss_dssp             TSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEE-EEEETTSCEEEEETTS-CEEE-EECCCSSCEEEEEECTTSSEE
T ss_pred             CCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEE-EEEeCCCeEEEEeCCC-CeeE-EEeCCCCCEEEEEECCCCCEE
Confidence            345555566655444444445677889998755544 4445667787777763 3222 223334456788888765555


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav  641 (734)
                      ... ...+.|.+.+.++.....+. .....+++|++.|...+|.....  .+.|...++++.....+. ..-....+|++
T Consensus       360 ~~~-~~dg~v~~~~~~~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~--d~~v~~~~~~~~~~~~~~-~~~~~v~~~~~  434 (577)
T 2ymu_A          360 ASA-SDDKTVKLWNRNGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD--DKTVKLWNRNGQLLQTLT-GHSSSVWGVAF  434 (577)
T ss_dssp             EEE-ETTSEEEEEETTCCEEEEEE-CCSSCEEEEEECTTSSCEEEEET--TSEEEEECTTCCEEEEEE-CCSSCEEEEEE
T ss_pred             EEE-eCCCEEEEEcCCCCEEEEec-CCCCCeEEEEECCCCCEEEEEeC--CCEEEEEeCCCCEEEEec-CCCCCeEEEEE
Confidence            544 44678988898887666554 44557889999987666665542  467777777776544433 33344578899


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .+.+.+|..+. ..+.|...++++...+.+..   ......+|++. .+.+..+-...+.|...+ .+|+.+..+.
T Consensus       435 s~d~~~l~~~~-~d~~v~~w~~~~~~~~~~~~---~~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~~~  505 (577)
T 2ymu_A          435 SPDDQTIASAS-DDKTVKLWNRNGQLLQTLTG---HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLT  505 (577)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTSCEEEEEEC---CSSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEEEE
T ss_pred             CCCCCEEEEEc-CCCEEEEEECCCCEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEEEe
Confidence            86666665543 45678888888776665542   22334566763 344444443445555544 3555544443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.65  E-value=0.0017  Score=76.11  Aligned_cols=224  Identities=9%  Similarity=0.063  Sum_probs=122.1

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-----------------
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-----------------  545 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-----------------  545 (734)
                      ..++..++.+.....+.........++|.|..++|.++.  .+.|+..++.++....+.....                 
T Consensus        92 ~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           92 ASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             eEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            345566777666555544445677888988888887763  4678888777544332211111                 


Q ss_pred             CCCccceeeeccCCcEEEEeCCC-----------------------------------CeEEEEeCCC---C---ceEEE
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHK-----------------------------------NTIELANFEG---T---MRKVL  584 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~-----------------------------------~~I~~~~ldG---~---~~~~l  584 (734)
                      +....+++.-+.++.|.++....                                   .+|.+.++++   .   ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence            11223466666666666552110                                   1456666665   3   22222


Q ss_pred             Ec-----CCCCCceeEEEeCCCCeE-EEEecCC-CceEEEeccCCCc-------eEEEE-EcCCCC-----ceeEEEecC
Q psy8875         585 VR-----SYLDEPRSLALNPIDGWM-YWSDWGQ-NAKIERAGMDGSH-------RNMVI-VSDIKW-----PNGLTLDLV  644 (734)
Q Consensus       585 ~~-----~~l~~P~~iavD~~~g~L-Ywtd~~~-~~~I~~~~ldG~~-------~~~lv-~~~l~~-----P~glavD~~  644 (734)
                      ..     ........++..|....+ +++.... ...|+..++++..       ...++ ...-.+     +..+++.+.
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD  329 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD  329 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence            21     011223455666654423 3444322 2467777776544       12222 222112     346778777


Q ss_pred             CCeEE-EEe--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC------CCceEEEeccCCC
Q psy8875         645 QRRLY-WVD--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ------QKAIYKANKFTGD  710 (734)
Q Consensus       645 ~~~LY-w~D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~------~~~v~~~~~~~G~  710 (734)
                      +..|+ |+-  .+...|+.++++|+..+.|.........+  +.+++++||++...      ...|++++..+++
T Consensus       330 G~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~--~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~  402 (740)
T 4a5s_A          330 GNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGI--EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYT  402 (740)
T ss_dssp             SSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEE--EEECSSEEEEEESCGGGCTTCBEEEEEETTEEE
T ss_pred             CCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEE--EEEeCCEEEEEEecCCCCCceeEEEEEECCCCC
Confidence            77776 663  34568999999998877665432111112  23458899998765      3578888764443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=97.65  E-value=0.0027  Score=72.01  Aligned_cols=195  Identities=12%  Similarity=-0.007  Sum_probs=117.4

Q ss_pred             ceEEeec--CCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISL--DHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l--~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.+.+  ++... .+ ........++|.+..+.++++....+.+...+++++..+. +.....   ..+++++.++.|
T Consensus        91 ~l~~~~~~~~g~~~-~l-~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-l~~~~~---~~~~~spDG~~l  164 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQ-RL-EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-LARLPG---FGFVSDIRGDLI  164 (582)
T ss_dssp             EEEEEETTSTTCCE-EC-TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-EEEESS---CEEEEEEETTEE
T ss_pred             EEEEEeccCCCccc-cc-cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-eecCCC---ceEEECCCCCEE
Confidence            4666777  55544 22 2222333456666676776666555555566777543333 332111   678898888888


Q ss_pred             EEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...   ...|++.++++...+.|. ........+++.|...+|+.++......|++.++++...+ ++......+.+
T Consensus       165 a~~~~~~~~~~~i~~~d~~~g~~~~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~  242 (582)
T 3o4h_A          165 AGLGFFGGGRVSLFTSNLSSGGLRVFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS  242 (582)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCCEEEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred             EEEEEcCCCCeEEEEEcCCCCCceEee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence            876543   256999998776666554 3344568999999888888655433348999999887766 44333333445


Q ss_pred             EE--------EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEE
Q psy8875         639 LT--------LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWS  694 (734)
Q Consensus       639 la--------vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywt  694 (734)
                      ++        +++.+ +||++-...+.+....+ |+..+ ..     .....++++.++.++++
T Consensus       243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~~~~-~~-----~~~v~~~~~sdg~~l~~  298 (582)
T 3o4h_A          243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GERVE-AP-----QGNHGRVVLWRGKLVTS  298 (582)
T ss_dssp             HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TEEEC-CC-----SSEEEEEEEETTEEEEE
T ss_pred             hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CCeec-cC-----CCceEEEEecCCEEEEE
Confidence            55        87666 77777655566666666 43222 11     12234555556666554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.64  E-value=0.035  Score=57.93  Aligned_cols=219  Identities=12%  Similarity=0.062  Sum_probs=125.1

Q ss_pred             ccceEEeecCCCc---eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeecc
Q psy8875         482 KHDIRKISLDHHE---MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWI  557 (734)
Q Consensus       482 ~~~I~~i~l~~~~---~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~  557 (734)
                      ...|+..++....   ...+......+.+|+|.+....|+ +-...+.|+..++..+.....+ +......+..+++.+.
T Consensus        29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~  107 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN  107 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred             CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEE-EEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence            4556666666553   233333455778999998655554 4446677888777644322222 2223345678888866


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCc----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC------------
Q psy8875         558 YSHIYWTDAHKNTIELANFEGTM----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD------------  621 (734)
Q Consensus       558 ~~~lY~td~~~~~I~~~~ldG~~----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld------------  621 (734)
                      ++.|+.+. ..+.|.+.+++...    ...+.......+..|++.|...+|+....  .+.|...++.            
T Consensus       108 ~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~~~d~~~~~~~~~~~~~~  184 (372)
T 1k8k_C          108 EKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTP  184 (372)
T ss_dssp             SSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBT
T ss_pred             CCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC--CCCEEEEEcccccccccccccc
Confidence            55555554 45778887776544    22232334567889999986665655543  3555555532            


Q ss_pred             ------CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEE
Q psy8875         622 ------GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWS  694 (734)
Q Consensus       622 ------G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywt  694 (734)
                            .......+.........|++.+.+..|+.+. ..+.|...++........+..  ......+|++. .+.++.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~  261 (372)
T 1k8k_C          185 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLAS--ETLPLLAVTFITESSLVAA  261 (372)
T ss_dssp             TBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEEC--SSCCEEEEEEEETTEEEEE
T ss_pred             cccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEcc--CCCCeEEEEEecCCCEEEE
Confidence                  1111112222334567899987666666554 567888888865444333332  12234677774 5555555


Q ss_pred             eCCCCceEEEeccC
Q psy8875         695 DWQQKAIYKANKFT  708 (734)
Q Consensus       695 d~~~~~v~~~~~~~  708 (734)
                      - ..+.|...+..+
T Consensus       262 ~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          262 G-HDCFPVLFTYDS  274 (372)
T ss_dssp             E-TTSSCEEEEEET
T ss_pred             E-eCCeEEEEEccC
Confidence            5 556666665544

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=97.63  E-value=0.036  Score=57.46  Aligned_cols=214  Identities=9%  Similarity=0.048  Sum_probs=124.1

Q ss_pred             ccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++..... ..+......+..++|.+....| .+-...+.|...++..+.. ...+......+..+++.+.++.
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l-~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL-ATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEE-EEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEE-EEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCCE
Confidence            34566666654333 3333334456678888755544 4555677888888875443 3333334445678888866555


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      |. +-...+.|.+.++........+.........|++.|...+|+...  ..+.|...++........+.........|+
T Consensus       179 la-sg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~  255 (321)
T 3ow8_A          179 LA-SGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVA  255 (321)
T ss_dssp             EE-EEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EE-EEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEE
Confidence            54 444568899999876544444444455678999998655555443  346677777765444434444455567899


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEE
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYK  703 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~  703 (734)
                      +.+.+..|+ +-...+.|...++........+.  .......+|++. ++.++++-...+.|..
T Consensus       256 ~sp~~~~l~-s~s~D~~v~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~s~~~d~~i~v  316 (321)
T 3ow8_A          256 FCPDDTHFV-SSSSDKSVKVWDVGTRTCVHTFF--DHQDQVWGVKYNGNGSKIVSVGDDQEIHI  316 (321)
T ss_dssp             ECTTSSEEE-EEETTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             ECCCCCEEE-EEeCCCcEEEEeCCCCEEEEEEc--CCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence            986665555 44455778888876544333332  122344567773 2333344333344443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.63  E-value=0.01  Score=63.43  Aligned_cols=203  Identities=6%  Similarity=-0.041  Sum_probs=124.8

Q ss_pred             cceEEeecCCC--------ceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCcccee
Q psy8875         483 HDIRKISLDHH--------EMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLA  553 (734)
Q Consensus       483 ~~I~~i~l~~~--------~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glA  553 (734)
                      ..|+..++...        ....+......+..|+|.+....++++-...+.|+..++..+.....+. ......+..|+
T Consensus       104 g~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  183 (402)
T 2aq5_A          104 CTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVD  183 (402)
T ss_dssp             SEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEE
T ss_pred             CeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEE
Confidence            44555555443        2333444556788999998765677777778889998888543332221 22344567888


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCC-CCCceeEEEeCCCCeEEEEec--CCCceEEEeccCCCce--EE
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSY-LDEPRSLALNPIDGWMYWSDW--GQNAKIERAGMDGSHR--NM  627 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~-l~~P~~iavD~~~g~LYwtd~--~~~~~I~~~~ldG~~~--~~  627 (734)
                      +.+.+..|+.+ ...+.|.+.++........+ ... ...+..+++.|. +.++.+..  ...+.|...++.....  ..
T Consensus       184 ~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~  261 (402)
T 2aq5_A          184 WSRDGALICTS-CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSL  261 (402)
T ss_dssp             ECTTSSCEEEE-ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEE
T ss_pred             ECCCCCEEEEE-ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceE
Confidence            88755555544 45689999998755443333 222 234788999875 55554431  2346777777765332  22


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc--eEEEEcCCCCCCCCeEEEEEC
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN--RRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      ...........+++++.+..||++-...+.|...++....  ...+... .......+|++..
T Consensus       262 ~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~-~~~~~v~~~~~sp  323 (402)
T 2aq5_A          262 QELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF-SSKESQRGMGYMP  323 (402)
T ss_dssp             EECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE-CCSSCCSEEEECC
T ss_pred             EeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc-ccCCcccceEEec
Confidence            2223345578899998899999888777888888877655  3333321 1224456777744

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.039  Score=57.25  Aligned_cols=209  Identities=9%  Similarity=-0.002  Sum_probs=120.8

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+.+|+|.+....|+ +-...+.|+..++..+..... +......+..|++.+.+..|+ +-...+.|.+.++....
T Consensus        31 h~~~v~~~~~s~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~  107 (369)
T 3zwl_B           31 HERPLTQVKYNKEGDLLF-SCSKDSSASVWYSLNGERLGT-LDGHTGTIWSIDVDCFTKYCV-TGSADYSIKLWDVSNGQ  107 (369)
T ss_dssp             CSSCEEEEEECTTSCEEE-EEESSSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSSEEE-EEETTTEEEEEETTTCC
T ss_pred             eeceEEEEEEcCCCCEEE-EEeCCCEEEEEeCCCchhhhh-hhhcCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCc
Confidence            345678889987555444 444677888888875543333 333345567888886554454 44557899999987655


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecC---CCceEEEeccCCCc--eEE----------EE-EcCCCCceeEEEecC
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWG---QNAKIERAGMDGSH--RNM----------VI-VSDIKWPNGLTLDLV  644 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~---~~~~I~~~~ldG~~--~~~----------lv-~~~l~~P~glavD~~  644 (734)
                      ....+. ....+..+++.|...+|+.+...   ..+.|...++....  ...          +. .........+++++.
T Consensus       108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (369)
T 3zwl_B          108 CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK  186 (369)
T ss_dssp             EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred             EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence            444443 45578899999977777666532   11455555443221  111          11 111125678888876


Q ss_pred             CCeEEEEeCCCCeEEEEecCC-CceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         645 QRRLYWVDAKLNEISSCDYNG-GNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG-~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +..|+.+. ..+.|...++.. ......+..  ......+|++. .+.++++-...+.|...+..+++.+..+.
T Consensus       187 ~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          187 GKYIIAGH-KDGKISKYDVSNNYEYVDSIDL--HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             GCEEEEEE-TTSEEEEEETTTTTEEEEEEEC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEc-CCCEEEEEECCCCcEeEEEEec--CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec
Confidence            66666655 457888888875 333322321  22344566663 33334444444667777766666555543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.62  E-value=0.078  Score=55.20  Aligned_cols=228  Identities=8%  Similarity=-0.046  Sum_probs=126.9

Q ss_pred             cceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc---eEEEEeCCCCCccceeeeccC
Q psy8875         483 HDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE---RTVVIEEDKTIADGLAVDWIY  558 (734)
Q Consensus       483 ~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~---~~~~~~~~~~~p~glAvD~~~  558 (734)
                      ..|+..++..... ..+......+..++|.+....|. +-...+.|...++..+..   ....+......+..+++.+ .
T Consensus        77 g~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~  154 (340)
T 1got_B           77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA-CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-D  154 (340)
T ss_dssp             TEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEE-EEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-T
T ss_pred             CcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEE-EEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-C
Confidence            4455555543332 23333445577889988655444 444567777777764322   1111222223344455542 2


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +. +++-...+.|.+.++........+.........+++.|... ++.+-. ..+.|...++........+.......++
T Consensus       155 ~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~-~d~~v~~wd~~~~~~~~~~~~h~~~v~~  231 (340)
T 1got_B          155 NQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA-CDASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             TE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE-TTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             Cc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe-CCCcEEEEECCCCeeEEEEcCCcCCEEE
Confidence            33 44555578899998876555444545556788999998544 444432 2456766666544433333334455688


Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |++.+.+..| .+-...+.|...++........+...........|++. .+.++.+-...+.|...+..+++.+..+.
T Consensus       232 v~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~  309 (340)
T 1got_B          232 ICFFPNGNAF-ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEE-EEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEee
Confidence            9998655554 45455678888887655443333221112233556663 45555555555677777766666665554

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.61  E-value=0.058  Score=55.07  Aligned_cols=207  Identities=9%  Similarity=-0.011  Sum_probs=119.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|.+....| .+-...+.|...++..+..... +......+..|++.+.++ ++++-...+.|.+.++.....
T Consensus        23 ~~~v~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWL-ASSSADKLIKIWGAYDGKFEKT-ISGHKLGISDVAWSSDSN-LLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             SSCEEEEEECTTSSEE-EEEETTSCEEEEETTTCCEEEE-ECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCE
T ss_pred             CCcEEEEEECCCCCEE-EEeeCCCeEEEEeCCCcccchh-hccCCCceEEEEEcCCCC-EEEEECCCCEEEEEECCCCcE
Confidence            3467788898755544 4445667788777765443333 333344567888886554 444545568899999876554


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      ...+.........+++.|...+|+....  .+.|...++........+.........|++.+.+..|+.+ ...+.|...
T Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  176 (312)
T 4ery_A          100 LKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW  176 (312)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSCEEEE
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEE
Confidence            4444455566788999987666666553  4667777775443333333333445778887655555544 455778888


Q ss_pred             ecCCCce-EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         662 DYNGGNR-RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       662 ~~dG~~~-~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++..... ..+...  .......+++. .+.++++-...+.|...+..+++.+..+.
T Consensus       177 d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          177 DTASGQCLKTLIDD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             ETTTCCEEEEECCS--SCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCceeeEEecc--CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence            8764433 333221  11122345552 23333443444667666666666555443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.028  Score=58.79  Aligned_cols=211  Identities=8%  Similarity=0.030  Sum_probs=116.4

Q ss_pred             CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+.+|+|.+. .+.++++-...+.|+..++..+.. ....+......+..|++.+.. +.++++-...+.|.+.++.
T Consensus        54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~  133 (379)
T 3jrp_A           54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  133 (379)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence            3456788888754 245555555678888888775432 222222234557788888662 4455555557889999886


Q ss_pred             CC--ceEEEEcCCCCCceeEEEeCC------------CCeEEEEecCCCceEEEeccCCCce-EEEE---EcCCCCceeE
Q psy8875         578 GT--MRKVLVRSYLDEPRSLALNPI------------DGWMYWSDWGQNAKIERAGMDGSHR-NMVI---VSDIKWPNGL  639 (734)
Q Consensus       578 G~--~~~~l~~~~l~~P~~iavD~~------------~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv---~~~l~~P~gl  639 (734)
                      ..  .....+.........+++.|.            .+.++++-. ..+.|...++..... ..++   .........|
T Consensus       134 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~  212 (379)
T 3jrp_A          134 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  212 (379)
T ss_dssp             TTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             CCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEE
Confidence            55  233334455567789999885            344444432 235666665543222 1121   2223456789


Q ss_pred             EEecCC--CeEEEEeCCCCeEEEEecCCCc---eEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCce
Q psy8875         640 TLDLVQ--RRLYWVDAKLNEISSCDYNGGN---RRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       640 avD~~~--~~LYw~D~~~~~I~~~~~dG~~---~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      ++.+..  +.++++-...+.|...++....   ...++..........+|++  .+.+|+.+.. .+.|...+...+...
T Consensus       213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG-DNKVTLWKENLEGKW  291 (379)
T ss_dssp             EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES-SSSEEEEEEEETTEE
T ss_pred             EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC-CCcEEEEeCCCCCcc
Confidence            998763  5555555556777777776543   3333322112233456677  3344554444 456655554444433


Q ss_pred             E
Q psy8875         713 T  713 (734)
Q Consensus       713 ~  713 (734)
                      .
T Consensus       292 ~  292 (379)
T 3jrp_A          292 E  292 (379)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.58  E-value=0.004  Score=67.72  Aligned_cols=211  Identities=13%  Similarity=0.030  Sum_probs=128.2

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+.+|+|+|..+.+..+-...+.|+..++..+....++. ..-...+.+|++.+..++++++-...+.|.+.++.+..
T Consensus       119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI  198 (435)
T ss_dssp             SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred             CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence            45688999998777777777778889888887554443332 12234577888887777888888888999999998877


Q ss_pred             eEEEEcCC--CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         581 RKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       581 ~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      ..++....  ......+++++...+|+...  ..+.|...+++|.....+ ........+|++.+.+..++.+-...+.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          199 LRVFASSDTINIWFCSLDVSASSRMVVTGD--NVGNVILLNMDGKELWNL-RMHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             EEEEECCSSCSCCCCCEEEETTTTEEEEEC--SSSBEEEEESSSCBCCCS-BCCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             eeEEeccCCCCccEEEEEECCCCCEEEEEe--CCCcEeeeccCcceeEEE-ecccceEEeeeecCCCceEEEEecCccee
Confidence            66665432  23456889988655555444  346788888877543322 12233457888887777777766556677


Q ss_pred             EEEecCCCc-eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         659 SSCDYNGGN-RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       659 ~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ...++.... ...+...........+|++. .+.++++-...+.|...+..+++....+
T Consensus       276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             eEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            766654322 22221111111112344442 2333444444466666666565544443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.55  E-value=0.045  Score=58.88  Aligned_cols=228  Identities=8%  Similarity=-0.036  Sum_probs=131.1

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++........+. ....+.+|+|++. +.++.+-...+.|...++.++.. ...+......+..|++.+.+. 
T Consensus       129 Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~-~~~~~~h~~~V~~v~~~p~~~-  205 (410)
T 1vyh_C          129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFEC-IRTMHGHDHNVSSVSIMPNGD-  205 (410)
T ss_dssp             SSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCE-EECCCCCSSCEEEEEECSSSS-
T ss_pred             CCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCce-eEEEcCCCCCEEEEEEeCCCC-
Confidence            3456666666544433333 4456788999875 44555666778888888774332 222222334567788886544 


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      ++++-...+.|.+.++........+.........+++.+.. .++++-. ..+.|...++........+.........|+
T Consensus       206 ~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s-~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~  283 (410)
T 1vyh_C          206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCS-NDQTVRVWVVATKECKAELREHRHVVECIS  283 (410)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEc-CCCeEEEEECCCCceeeEecCCCceEEEEE
Confidence            44555567899999986554444444555567888888754 4444432 235666666654443333333334455666


Q ss_pred             EecCC-------------------CeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCc
Q psy8875         641 LDLVQ-------------------RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKA  700 (734)
Q Consensus       641 vD~~~-------------------~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~  700 (734)
                      +.+..                   +.+.++-...+.|...++........+..  ......+|++. .+.++++-...+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC--CCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            65432                   44556666677888888765443333322  22334567773 3444445445566


Q ss_pred             eEEEeccCCCceEEEe
Q psy8875         701 IYKANKFTGDNLTAIT  716 (734)
Q Consensus       701 v~~~~~~~G~~~~~l~  716 (734)
                      |...+..+++.+..+.
T Consensus       362 i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          362 LRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             EEEECCTTSCCCEEEE
T ss_pred             EEEEECCCCceEEEEc
Confidence            7777766666666554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.55  E-value=0.021  Score=60.38  Aligned_cols=230  Identities=11%  Similarity=-0.038  Sum_probs=131.4

Q ss_pred             ccceEEeecCCCc-------eEEEecCCcceEEEeeecc---CC---eEEEEEeCCCcEEEEecCCCCc-----eEEEEe
Q psy8875         482 KHDIRKISLDHHE-------MTAIVNSTKSATAIDFVFR---TG---MIFWSDISEKKIYKAPIDEGSE-----RTVVIE  543 (734)
Q Consensus       482 ~~~I~~i~l~~~~-------~~~l~~~~~~~~~i~~d~~---~~---~lyw~d~~~~~I~~~~l~~g~~-----~~~~~~  543 (734)
                      +..|+..++....       ...+......+..|+|.+.   .+   .++++-...+.|+..++..+..     ...+ .
T Consensus        35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~  113 (397)
T 1sq9_A           35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKL-D  113 (397)
T ss_dssp             TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEE-C
T ss_pred             CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceee-c
Confidence            3456666665544       3444444556788999875   14   4555555677788777775443     2222 2


Q ss_pred             CC-----CCCccceeee----ccCCcEEEEeCCCCeEEEEeCCC-------CceE-----EEE------cCCCCCceeEE
Q psy8875         544 ED-----KTIADGLAVD----WIYSHIYWTDAHKNTIELANFEG-------TMRK-----VLV------RSYLDEPRSLA  596 (734)
Q Consensus       544 ~~-----~~~p~glAvD----~~~~~lY~td~~~~~I~~~~ldG-------~~~~-----~l~------~~~l~~P~~ia  596 (734)
                      ..     ...+..+++.    +.+..++++-...+.|.+.++..       ....     .+.      ......+..++
T Consensus       114 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  193 (397)
T 1sq9_A          114 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVD  193 (397)
T ss_dssp             CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEE
T ss_pred             ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEE
Confidence            12     2556778887    66666144444457888877754       2222     232      23456688999


Q ss_pred             EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---C---CCCceeEEEecCCCeEEEEeCCC---CeEEEEecCCCc
Q psy8875         597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---D---IKWPNGLTLDLVQRRLYWVDAKL---NEISSCDYNGGN  667 (734)
Q Consensus       597 vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~---l~~P~glavD~~~~~LYw~D~~~---~~I~~~~~dG~~  667 (734)
                      +.|.. .|+...  ..+.|...++........+..   .   ......|++++.+..|+.+. ..   +.|...++....
T Consensus       194 ~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~-~d~~~g~i~i~d~~~~~  269 (397)
T 1sq9_A          194 ISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH-DSNSFGCITLYETEFGE  269 (397)
T ss_dssp             ECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE-EETTEEEEEEEETTTCC
T ss_pred             ECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe-cCCCCceEEEEECCCCc
Confidence            99866 444433  357788888765443333333   2   44567899987666665554 33   688888876544


Q ss_pred             eEEEEcCCC-----------CCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         668 RRLVLYSPQ-----------TLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       668 ~~~i~~~~~-----------~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ....+....           .......|++. .+.++++-...+.|...+..+++.+..+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            433332200           22344567773 34444444455777777777777666665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.55  E-value=0.0064  Score=74.29  Aligned_cols=217  Identities=8%  Similarity=-0.021  Sum_probs=132.8

Q ss_pred             ccceE-EeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIR-KISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~-~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+ .+++.+.....+......+..++|.+....|+++. ..+.|+..++.++... .++.........+++.+.++.
T Consensus       357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~-~~~~v~~~d~~tg~~~-~~~~~~~~~v~~~~~SpDG~~  434 (1045)
T 1k32_A          357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAN-DRFEIMTVDLETGKPT-VIERSREAMITDFTISDNSRF  434 (1045)
T ss_dssp             TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEE-EEEECSSSCCCCEEECTTSCE
T ss_pred             CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEEC-CCCeEEEEECCCCceE-EeccCCCCCccceEECCCCCe
Confidence            44566 66777666555554445678899998888887765 4568999999855443 333334445578999888888


Q ss_pred             EEEEeCC---------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc----------------eE
Q psy8875         561 IYWTDAH---------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA----------------KI  615 (734)
Q Consensus       561 lY~td~~---------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~----------------~I  615 (734)
                      |.++...         ...|++.++++..... +......+..+++.|...+|||+......                ++
T Consensus       435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~-l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~  513 (1045)
T 1k32_A          435 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP  513 (1045)
T ss_dssp             EEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred             EEEEecCccccccCCCCCeEEEEECCCCcEEE-eeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCcee
Confidence            8877542         2589999998765333 33445567789999988889988642111                12


Q ss_pred             EEec------------------------cCCCceE-EEEEcCCCCceeEEEecCCCeEEEE-------------eCCCCe
Q psy8875         616 ERAG------------------------MDGSHRN-MVIVSDIKWPNGLTLDLVQRRLYWV-------------DAKLNE  657 (734)
Q Consensus       616 ~~~~------------------------ldG~~~~-~lv~~~l~~P~glavD~~~~~LYw~-------------D~~~~~  657 (734)
                      +.+.                        ++|...+ +.+........++++.+ .+++|++             ......
T Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~-dg~~~~~~~~~g~~~~~~~~~~~~~~  592 (1045)
T 1k32_A          514 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLE-SSILIYSVPVHGEFAAYYQGAPEKGV  592 (1045)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECS-SEEEEEECCCCCSHHHHHHCCCCCEE
T ss_pred             EEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcC-CCeEEEEecccCcccccccccCCCce
Confidence            2211                        1221111 11101112345678865 4444443             233558


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCC
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      |+++++.+...+.+.      ..+.++++  ++.+|+++..+  .|..++..+++
T Consensus       593 l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~--~i~~~d~~~~~  639 (1045)
T 1k32_A          593 LLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD--GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT--SCEEEEESSCT
T ss_pred             EEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC--cEEEEeCccCc
Confidence            999998877766654      22445666  56788888765  56666666666

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.55  E-value=0.021  Score=67.04  Aligned_cols=210  Identities=8%  Similarity=0.002  Sum_probs=131.5

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+.+|+|++....|.... ..+.|...++..+.....+ ......+..+++.+.++.|..... .+.|.+.++....
T Consensus        12 h~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~   88 (814)
T 3mkq_A           12 RSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSI-QVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGE   88 (814)
T ss_dssp             ECSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEE-ECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCC
T ss_pred             CCCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEE-ecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCc
Confidence            345678899998766666554 5678888887754433333 334456788999877666666554 6899999987655


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ....+......+..+++.|...+|+....  .+.|...+++.. .....+...-.....+++.+..+.++++-...+.|.
T Consensus        89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEET--TSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEEEecCCCCEEEEEEeCCCCEEEEEcC--CCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence            54444455667899999998777776653  466777776654 333344444455678898864555666655668888


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ..++........+.. ........+++.   .+.++++-...+.|...+..+++.+..+.
T Consensus       167 vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          167 VWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            888765443333322 111334455553   45555555555667666666665554443

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.54  E-value=0.032  Score=59.61  Aligned_cols=220  Identities=11%  Similarity=0.032  Sum_probs=129.2

Q ss_pred             ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      ...|+..++.......+. .....+.+|+|.+....| ++-...+.|+..++..+.....+ ......+..|++.+.++.
T Consensus       118 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          118 EGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL-ISSSQDMQLKIWSVKDGSNPRTL-IGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             TSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTCCCCEEE-ECCSSCEEEEEEETTTTE
T ss_pred             CCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE-EEEeCCCeEEEEeCCCCcCceEE-cCCCCcEEEEEEcCCCCE
Confidence            345666666655544443 345678899999865544 45556788998888865554444 334456778999876555


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcC---C---------------------CCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRS---Y---------------------LDEPRSLALNPIDGWMYWSDWGQNAKIE  616 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~---~---------------------l~~P~~iavD~~~g~LYwtd~~~~~~I~  616 (734)
                      |+ +-...+.|.+.++........+..   .                     ......++++|...+|+...  ..+.|.
T Consensus       196 l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~  272 (420)
T 3vl1_A          196 VL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--VSGVIT  272 (420)
T ss_dssp             EE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--TTSCEE
T ss_pred             EE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc--CCCeEE
Confidence            55 444567898888865443333321   1                     13334555666544555444  246677


Q ss_pred             EeccCCCceEEEEEc-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCc--eEEEEcCCCCCCCCeEEEEECCEEEE
Q psy8875         617 RAGMDGSHRNMVIVS-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGN--RRLVLYSPQTLSHPFSISTFEDWLYW  693 (734)
Q Consensus       617 ~~~ldG~~~~~lv~~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~i~~~~~~~~~P~gl~v~~~~lyw  693 (734)
                      ..++........+.. .......|++.+.+..++++-...+.|...++....  ...+....  ......+....+.+++
T Consensus       273 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~  350 (420)
T 3vl1_A          273 VHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE--GTPINNVYFAAGALFV  350 (420)
T ss_dssp             EEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST--TSCEEEEEEETTEEEE
T ss_pred             EEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC--CCCceEEEeCCCCEEE
Confidence            777754443333322 234567899987666355555566889998886543  34443211  1223345556777777


Q ss_pred             EeCCCCceEEEeccC
Q psy8875         694 SDWQQKAIYKANKFT  708 (734)
Q Consensus       694 td~~~~~v~~~~~~~  708 (734)
                      +-...+.|...+..+
T Consensus       351 s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          351 SSGFDTSIKLDIISD  365 (420)
T ss_dssp             EETTTEEEEEEEECC
T ss_pred             EecCCccEEEEeccC
Confidence            776666666665444

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.54  E-value=3.4e-05  Score=56.74  Aligned_cols=37  Identities=30%  Similarity=0.839  Sum_probs=32.7

Q ss_pred             CCCcccceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|+|++|+|+|.|++||.+..+.++ |.+++.
T Consensus         5 ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~t-C~dide   41 (51)
T 1kig_L            5 NGGCDQFCREERSEVRCSCAHGYVLGDDSKS-CVSTER   41 (51)
T ss_dssp             TTSSSSCCCEETTEECCCCCTTEEECTTSSC-EEECSS
T ss_pred             CCCcCCEeEcCCCCeEEeCCCCcEECCCCCc-cccCCc
Confidence            5789999999999999999999999988777 887654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.54  E-value=0.0068  Score=64.10  Aligned_cols=208  Identities=7%  Similarity=-0.054  Sum_probs=122.1

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|.+....| ++-...+.|+..++..+... ..+......+..|++.+....++++-...+.|.+.++.....
T Consensus       139 ~~~V~~v~~spdg~~l-~sgs~dg~v~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~  216 (357)
T 4g56_B          139 DDIVKTLSVFSDGTQA-VSGGKDFSVKVWDLSQKAVL-KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP  216 (357)
T ss_dssp             SSCEEEEEECSSSSEE-EEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred             CCCEEEEEECCCCCEE-EEEeCCCeEEEEECCCCcEE-EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence            3467889998755444 45556788888888744322 233333456778888877777777777778899888754432


Q ss_pred             EEEE--cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         582 KVLV--RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       582 ~~l~--~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ...+  ......+..|++.|..+.++.+-. ....|...++........+.........|++.+.++++..+-...+.|.
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEee-cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence            2221  123345788999988787776642 2456776666443333233333445678898876666555555567888


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEecc-CCCceEEE
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKF-TGDNLTAI  715 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~-~G~~~~~l  715 (734)
                      ..+++.......+   .......+|++.  ++.++.+-...+.|+..+.. .|+...+|
T Consensus       296 iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~~i  351 (357)
T 4g56_B          296 VLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENLI  351 (357)
T ss_dssp             EECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---------
T ss_pred             EEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccccc
Confidence            8887655433322   222345677773  45666665555666655543 23443333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=97.53  E-value=0.0031  Score=77.03  Aligned_cols=208  Identities=12%  Similarity=0.091  Sum_probs=131.8

Q ss_pred             eeeeeccceEEeecCCCceEEEecC-----------CcceEEEeee-ccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC
Q psy8875         477 LLFARKHDIRKISLDHHEMTAIVNS-----------TKSATAIDFV-FRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE  544 (734)
Q Consensus       477 l~~~~~~~I~~i~l~~~~~~~l~~~-----------~~~~~~i~~d-~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~  544 (734)
                      |++.....|+.+++.+.....+...           ...+.+++|. +....|.++.  .+.|+.+++.++... . +..
T Consensus       259 la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~-~-~~~  334 (1045)
T 1k32_A          259 ILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVL-K-VPE  334 (1045)
T ss_dssp             EEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEE-E-CSC
T ss_pred             EEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceE-E-ccC
Confidence            4445566677766644433322111           1246678898 8777777765  667888887744322 2 221


Q ss_pred             CCC-CccceeeeccCCcEEEEeCCCCeEE-EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         545 DKT-IADGLAVDWIYSHIYWTDAHKNTIE-LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       545 ~~~-~p~glAvD~~~~~lY~td~~~~~I~-~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                      ... .+..+++. .++.|+++.. ...|+ +.++++...+.+. .....+..+++.|...+|+++..  ...|+..++.+
T Consensus       335 ~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~--~~~v~~~d~~t  409 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLET  409 (1045)
T ss_dssp             CSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTT
T ss_pred             CCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECC--CCeEEEEECCC
Confidence            222 34455555 4456666655 56888 8888877665554 44567889999998888887763  36899999876


Q ss_pred             CceEEEEEcCCCCceeEEEecCCCeEEEEeCC---------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEE
Q psy8875         623 SHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK---------LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWL  691 (734)
Q Consensus       623 ~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~---------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~l  691 (734)
                      ...+.++.........+++.+.+.+|.++...         ...|+.+++++...+.+.   .....+..+++  .+.+|
T Consensus       410 g~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~---~~~~~~~~~~~spdG~~l  486 (1045)
T 1k32_A          410 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFDADSKNL  486 (1045)
T ss_dssp             CCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---CSSSBEEEEEECTTSCEE
T ss_pred             CceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEee---CCCcccCCceEcCCCCEE
Confidence            66655554444445789999888888887542         258999998876543332   22334556666  45678


Q ss_pred             EEEeC
Q psy8875         692 YWSDW  696 (734)
Q Consensus       692 ywtd~  696 (734)
                      ||+..
T Consensus       487 ~~~s~  491 (1045)
T 1k32_A          487 YYLSY  491 (1045)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            88765

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=97.52  E-value=0.021  Score=60.45  Aligned_cols=180  Identities=13%  Similarity=0.043  Sum_probs=111.8

Q ss_pred             ccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC--CCCccceeeec
Q psy8875         482 KHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED--KTIADGLAVDW  556 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~--~~~p~glAvD~  556 (734)
                      +..|+..++.......+..   ....+.+|+|.+..+.++++-...+.|...++.+ .....+....  ...+..|++.+
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~  173 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSV  173 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEET
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECC
Confidence            3567777776655544443   4567789999875556666666778888888873 3333332211  13467888887


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC---CceEEEEEcCC
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG---SHRNMVIVSDI  633 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG---~~~~~lv~~~l  633 (734)
                      ....|+ +-...+.|.+.++.+.....+. ........|++.|....++++-. ..+.|...++..   ....+......
T Consensus       174 ~~~~l~-~~~~d~~i~i~d~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~~~  250 (383)
T 3ei3_B          174 SRQMLA-TGDSTGRLLLLGLDGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSS-VDATVKLWDLRNIKDKNSYIAEMPHE  250 (383)
T ss_dssp             TTTEEE-EEETTSEEEEEETTSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEE-TTSEEEEEEGGGCCSTTCEEEEEECS
T ss_pred             CCCEEE-EECCCCCEEEEECCCCEEEEec-cCCCcEEEEEECCCCCCEEEEEe-CCCEEEEEeCCCCCcccceEEEecCC
Confidence            655554 4445689999999876655554 44567899999997774555542 235666666542   11111111344


Q ss_pred             CCceeEEEec-CCCeEEEEeCCCCeEEEEecCCC
Q psy8875         634 KWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       634 ~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .....|++++ .+..|+.+ ...+.|...++...
T Consensus       251 ~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          251 KPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYDW  283 (383)
T ss_dssp             SCEEEEEECTTTSCEEEEE-ESSSEEEEEETTBT
T ss_pred             CceEEEEEcCCCCCEEEEE-cCCCcEEEEECCCC
Confidence            5678899987 55555544 45678888887643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.52  E-value=0.05  Score=55.64  Aligned_cols=160  Identities=9%  Similarity=0.035  Sum_probs=99.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|++....|. +-...+.|...++..+..... +.........+++.+..+ +.++-...+.|.+.++.....
T Consensus        13 ~~~V~~~~fsp~~~~l~-s~~~dg~v~lWd~~~~~~~~~-~~~~~~~v~~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           13 SDRVKGIDFHPTEPWVL-TTLYSGRVELWNYETQVEVRS-IQVTETPVRAGKFIARKN-WIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             CSCEEEEEECSSSSEEE-EEETTSEEEEEETTTTEEEEE-EECCSSCEEEEEEEGGGT-EEEEEETTSEEEEEETTTCCE
T ss_pred             CCceEEEEECCCCCEEE-EEcCCCcEEEEECCCCceeEE-eeccCCcEEEEEEeCCCC-EEEEECCCCEEEEEECCCCcE
Confidence            45678899998655544 445678888888874433222 222333456777776544 444555578999999876555


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ...+.........|++.|...+|+-...  .+.|...++... .....+.........+++.+..+.++.+-...+.|..
T Consensus        90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           90 VVDFEAHPDYIRSIAVHPTKPYVLSGSD--DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             EEEEeCCCCcEEEEEEcCCCCEEEEECC--CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            4444455667889999987666554442  355666555433 2222333344456788888766666666666678888


Q ss_pred             EecCCC
Q psy8875         661 CDYNGG  666 (734)
Q Consensus       661 ~~~dG~  666 (734)
                      .++...
T Consensus       168 wd~~~~  173 (304)
T 2ynn_A          168 WSLGQS  173 (304)
T ss_dssp             EETTCS
T ss_pred             EECCCC
Confidence            887543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.51  E-value=0.03  Score=60.25  Aligned_cols=164  Identities=10%  Similarity=0.039  Sum_probs=103.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+..++|++.. .++++-...+.|...++..+.....+ ......+..|++.+. +.+.++-...+.|.+.++.+..
T Consensus       107 h~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~~~~~~~l-~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             CSSCEEEEEECSSS-SEEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSC
T ss_pred             cCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEE-eccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCc
Confidence            34567889998754 45566667888988888866554443 323445678888854 5566666667888888887655


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ....+.........+++.|...+|+-..  ..+.|...++........+.....+...+++.+. +.++++-...+.|..
T Consensus       184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~v  260 (410)
T 1vyh_C          184 CIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD-GTLIASCSNDQTVRV  260 (410)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC-CCEEEEEcCCCeEEE
Confidence            4333444455678999998766555444  2467777776544333333444455677787644 445555555677877


Q ss_pred             EecCCCceEE
Q psy8875         661 CDYNGGNRRL  670 (734)
Q Consensus       661 ~~~dG~~~~~  670 (734)
                      .++.......
T Consensus       261 wd~~~~~~~~  270 (410)
T 1vyh_C          261 WVVATKECKA  270 (410)
T ss_dssp             EETTTCCEEE
T ss_pred             EECCCCceee
Confidence            7776554433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.51  E-value=0.0043  Score=72.13  Aligned_cols=191  Identities=9%  Similarity=0.048  Sum_probs=110.0

Q ss_pred             eeeeeeccceEEeecCCCceEEEecC-Cc------------------ceEEEeeeccCCeEEEEEeCC------------
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVNS-TK------------------SATAIDFVFRTGMIFWSDISE------------  524 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~~-~~------------------~~~~i~~d~~~~~lyw~d~~~------------  524 (734)
                      .|.+.....|+.+++.+.....+... ..                  ...+++|.+..+.|+++....            
T Consensus       127 ~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          127 QLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             CEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            45566667888888877666555432 11                  236899999888887765321            


Q ss_pred             ---------------------CcEEEEecCCCCceEEEEeCC-----CCCccceeeeccCCcEEE-EeCC--CCeEEEEe
Q psy8875         525 ---------------------KKIYKAPIDEGSERTVVIEED-----KTIADGLAVDWIYSHIYW-TDAH--KNTIELAN  575 (734)
Q Consensus       525 ---------------------~~I~~~~l~~g~~~~~~~~~~-----~~~p~glAvD~~~~~lY~-td~~--~~~I~~~~  575 (734)
                                           ..|+..++.++.....+....     ......+++.+.++.|+. ++..  ...|++.+
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                 146666665433222221100     112334666665555533 3332  34688888


Q ss_pred             CCCCceEEEEcC-CCC--C--ceeEEEeCCCCeEEEE-ecCC-----CceEEEec-cCCCc---eEEEEEcCCCCceeEE
Q psy8875         576 FEGTMRKVLVRS-YLD--E--PRSLALNPIDGWMYWS-DWGQ-----NAKIERAG-MDGSH---RNMVIVSDIKWPNGLT  640 (734)
Q Consensus       576 ldG~~~~~l~~~-~l~--~--P~~iavD~~~g~LYwt-d~~~-----~~~I~~~~-ldG~~---~~~lv~~~l~~P~gla  640 (734)
                      +.+.....++.. ...  .  +..+++.|...+|+++ ....     ..+|+..+ .++..   .+.+..........++
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~  366 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA  366 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence            876554444321 111  1  3578999888878875 3221     23788888 56654   3333322222223368


Q ss_pred             EecCCCeEEEEeC----CCCeEEEEecCCC
Q psy8875         641 LDLVQRRLYWVDA----KLNEISSCDYNGG  666 (734)
Q Consensus       641 vD~~~~~LYw~D~----~~~~I~~~~~dG~  666 (734)
                      +++.+++||++..    ....|++++++|.
T Consensus       367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             EcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence            9999999998754    3457888888775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.51  E-value=0.0096  Score=61.61  Aligned_cols=224  Identities=8%  Similarity=0.005  Sum_probs=124.7

Q ss_pred             ccceEEeecCCCc----eEEEecCCcceEEEeeeccCC-eEEEEEeCCCcEEEEec-CCCCceEEEEeC--CCCCcccee
Q psy8875         482 KHDIRKISLDHHE----MTAIVNSTKSATAIDFVFRTG-MIFWSDISEKKIYKAPI-DEGSERTVVIEE--DKTIADGLA  553 (734)
Q Consensus       482 ~~~I~~i~l~~~~----~~~l~~~~~~~~~i~~d~~~~-~lyw~d~~~~~I~~~~l-~~g~~~~~~~~~--~~~~p~glA  553 (734)
                      +..|+..++....    ...+......+.+++|.+... .|+ +-...+.|+..++ ..+. . ..+..  ....+..|+
T Consensus        32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~-~-~~~~~~~~~~~v~~l~  108 (342)
T 1yfq_A           32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIY-VGTVQGEILKVDLIGSPS-F-QALTNNEANLGICRIC  108 (342)
T ss_dssp             TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEE-EEETTSCEEEECSSSSSS-E-EECBSCCCCSCEEEEE
T ss_pred             CCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEE-EEcCCCeEEEEEeccCCc-e-EeccccCCCCceEEEE
Confidence            3445555555444    333444556788999998655 454 4446788999888 7443 2 33333  334567888


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCC---------CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-C
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEG---------TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-S  623 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG---------~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~  623 (734)
                      +.+  +.++++-...+.|.+.++..         ......+ .....+.++++.+..  |+...  ..+.|...++.. .
T Consensus       109 ~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~--l~~~~--~d~~i~i~d~~~~~  181 (342)
T 1yfq_A          109 KYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKIFTMDTNSSR--LIVGM--NNSQVQWFRLPLCE  181 (342)
T ss_dssp             EET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCEEEEEECSSE--EEEEE--STTEEEEEESSCCT
T ss_pred             eCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE-eeCCceEEEEecCCc--EEEEe--CCCeEEEEECCccc
Confidence            887  55555656678898888753         1111111 133467788887643  55554  246777777765 2


Q ss_pred             c--eEEEEEcCCCCceeEEEec-CCCeEEEEeCCCCeEEEEecCCC------ceEEEEcCCCC-------CCCCeEEEEE
Q psy8875         624 H--RNMVIVSDIKWPNGLTLDL-VQRRLYWVDAKLNEISSCDYNGG------NRRLVLYSPQT-------LSHPFSISTF  687 (734)
Q Consensus       624 ~--~~~lv~~~l~~P~glavD~-~~~~LYw~D~~~~~I~~~~~dG~------~~~~i~~~~~~-------~~~P~gl~v~  687 (734)
                      .  ........-..+..|++.+ .+..|+.+ ...+.|...+++..      .....+.....       .....+|++.
T Consensus       182 ~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  260 (342)
T 1yfq_A          182 DDNGTIEESGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS  260 (342)
T ss_dssp             TCCCEEEECSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred             cccceeeecCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence            2  2222223334567888876 55555444 44667777665543      32222322111       1134566663


Q ss_pred             -CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         688 -EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       688 -~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                       .+.++++-...+.|...+..+++.+..+.
T Consensus       261 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             TTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             CCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence             34444444455677777776666555443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.50  E-value=0.027  Score=63.52  Aligned_cols=236  Identities=9%  Similarity=-0.045  Sum_probs=134.2

Q ss_pred             eeeeeeccceEEeecCCC-----ceEEEecCCcc-eEEEeeec--cCCeEEEEEeCCCcEEEEecCCC------C-ceEE
Q psy8875         476 SLLFARKHDIRKISLDHH-----EMTAIVNSTKS-ATAIDFVF--RTGMIFWSDISEKKIYKAPIDEG------S-ERTV  540 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~-----~~~~l~~~~~~-~~~i~~d~--~~~~lyw~d~~~~~I~~~~l~~g------~-~~~~  540 (734)
                      +|++.....|+..++...     ....+...... +.+++|.+  ....|+.. ...+.|...++..+      . ....
T Consensus        32 ~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~-~~dg~v~vw~~~~~~~~~~~~~~~~~  110 (615)
T 1pgu_A           32 AIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG-DESGKVIVWGWTFDKESNSVEVNVKS  110 (615)
T ss_dssp             EEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE-ETTSEEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe-cCCCEEEEEeCCCCcccccccccccc
Confidence            455555666777777644     33344334556 88999998  55555444 45677777776423      1 1112


Q ss_pred             EEeCCCCCccceeeeccCCcEEEEeCCC---CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875         541 VIEEDKTIADGLAVDWIYSHIYWTDAHK---NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER  617 (734)
Q Consensus       541 ~~~~~~~~p~glAvD~~~~~lY~td~~~---~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~  617 (734)
                      .+......+..|++.+.++.|+.+....   +.|.+.+ .+. ....+.........+++.|....++.+-. ..+.|..
T Consensus       111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~v~v  187 (615)
T 1pgu_A          111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVG-DDGSVVF  187 (615)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEE-TTTEEEE
T ss_pred             hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCC-cceeeecCCccEEEEEECCCCCcEEEEEe-CCCcEEE
Confidence            2222345677899988777777766542   4566655 222 22233345567889999987764555542 3466777


Q ss_pred             eccCCCceEEEEEcCCC---CceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEE-cCC-CCCCCCeEEEEECCEE
Q psy8875         618 AGMDGSHRNMVIVSDIK---WPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVL-YSP-QTLSHPFSISTFEDWL  691 (734)
Q Consensus       618 ~~ldG~~~~~lv~~~l~---~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~-~~~-~~~~~P~gl~v~~~~l  691 (734)
                      .++........+.....   ....|++.+. +..|+.+ ...+.|...++........+ ... .......+|++..+.+
T Consensus       188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  266 (615)
T 1pgu_A          188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQK  266 (615)
T ss_dssp             EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSE
T ss_pred             EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCE
Confidence            66654333333333333   4678899876 4455444 45678888887654443333 100 1123345666644444


Q ss_pred             EEEeCCCCceEEEeccCCCceEEEe
Q psy8875         692 YWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       692 ywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +++-...+.|...+..+++.+..+.
T Consensus       267 l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          267 FATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEc
Confidence            4554445677777776676655554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.50  E-value=0.049  Score=63.91  Aligned_cols=227  Identities=13%  Similarity=0.051  Sum_probs=132.3

Q ss_pred             cceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+..++.... ...+......+.+++|.+....|.... ..+.|...++..+.....+ ......+..+++.+.+..|
T Consensus        35 g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKVVDF-EAHPDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSSSEE
T ss_pred             CEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEEEEE-ecCCCCEEEEEEeCCCCEE
Confidence            345555654433 333333456788999998776666554 5788888888755443333 3344567788888766666


Q ss_pred             EEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCceeE
Q psy8875         562 YWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNGL  639 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~gl  639 (734)
                      +.+. ..+.|.+.++... .....+.........+++.|..+.++++-. ..+.|...++........+.. .......+
T Consensus       113 ~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~  190 (814)
T 3mkq_A          113 LSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (814)
T ss_dssp             EEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCCCEE
T ss_pred             EEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCcceeEEecCCCCCEEEE
Confidence            6544 4688999998765 333444455566789999985565555543 346787777755443333332 22556778


Q ss_pred             EEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         640 TLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       640 avD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++.+. .+.++++-...+.|...++........+..  .......+++. .+.++++-...+.|...+..+++.+..+
T Consensus       191 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  266 (814)
T 3mkq_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL  266 (814)
T ss_dssp             EECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            88652 344444555567888888765544333332  12233455552 2333444333455655555555544433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.49  E-value=0.0019  Score=75.21  Aligned_cols=219  Identities=7%  Similarity=0.034  Sum_probs=121.9

Q ss_pred             cceEEeecCCCceEEEecCCc---ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCC------------
Q psy8875         483 HDIRKISLDHHEMTAIVNSTK---SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKT------------  547 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~---~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~------------  547 (734)
                      ..|+..++.+.....+.....   .+..++|.+..+.|.++..  +.|+..++.++....+. .....            
T Consensus        91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~v~  167 (723)
T 1xfd_A           91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRVV-STGKEGVIYNGLSDWLY  167 (723)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEEE-CCCBTTTEEEEECCHHH
T ss_pred             eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEEe-cCCCCCceECcccceeE
Confidence            445566666655544432211   2556888888888887753  67898888855444332 21111            


Q ss_pred             ------CccceeeeccCCcEEEEeCCC---------------------------------CeEEEEeCCCCce-EEEEcC
Q psy8875         548 ------IADGLAVDWIYSHIYWTDAHK---------------------------------NTIELANFEGTMR-KVLVRS  587 (734)
Q Consensus       548 ------~p~glAvD~~~~~lY~td~~~---------------------------------~~I~~~~ldG~~~-~~l~~~  587 (734)
                            .+.++++.+.++.|+++....                                 ..|.+.++.+... ..+...
T Consensus       168 ~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~  247 (723)
T 1xfd_A          168 EEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPP  247 (723)
T ss_dssp             HHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCC
T ss_pred             EEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCC
Confidence                  225688887788787764321                                 1566677665543 222211


Q ss_pred             C-----CCCceeEEEeCCCCeEE-EEecC-CCceEEEeccCCCceEEEEEc-CCCC----ceeEEEecCCCeEEEE-eCC
Q psy8875         588 Y-----LDEPRSLALNPIDGWMY-WSDWG-QNAKIERAGMDGSHRNMVIVS-DIKW----PNGLTLDLVQRRLYWV-DAK  654 (734)
Q Consensus       588 ~-----l~~P~~iavD~~~g~LY-wtd~~-~~~~I~~~~ldG~~~~~lv~~-~l~~----P~glavD~~~~~LYw~-D~~  654 (734)
                      .     ......+++.|...+|+ +++.+ ....|+..++++.....++.. .-.+    +..+++.+.+.+|+++ ...
T Consensus       248 ~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  327 (723)
T 1xfd_A          248 DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIP  327 (723)
T ss_dssp             CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEEC
T ss_pred             ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecc
Confidence            0     12335688888655553 33322 235788888876554444332 1122    2478898888888886 433


Q ss_pred             CC------eEEEEe-cCCCc---eEEEEcCCCCCCCCeE-EEE--ECCEEEEEeCC----CCceEEEecc
Q psy8875         655 LN------EISSCD-YNGGN---RRLVLYSPQTLSHPFS-IST--FEDWLYWSDWQ----QKAIYKANKF  707 (734)
Q Consensus       655 ~~------~I~~~~-~dG~~---~~~i~~~~~~~~~P~g-l~v--~~~~lywtd~~----~~~v~~~~~~  707 (734)
                      .+      .|+.++ .+++.   .+.+....  . .... +++  .+++||++...    ...|++++..
T Consensus       328 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~--~-~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          328 QGGRGKFYHITVSSSQPNSSNDNIQSITSGD--W-DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             CSSSSCEEEEEEECSSCCSSSCCCCBSCCSS--S-CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred             cCCCcceeEEEEEeccCCCCccceeEeecCC--e-EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence            33      688888 56655   44333211  1 1122 345  46788877543    3467777643

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.45  E-value=0.036  Score=57.87  Aligned_cols=206  Identities=8%  Similarity=-0.019  Sum_probs=114.8

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      ...+.+|+|++....|. +-...+.|+..++..+....+ .+......+..|++.+. .+.++++-...+.|.+.++...
T Consensus        11 ~~~v~~~~~s~~~~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLA-TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CCCEEEEEECSSSSEEE-EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             cccEEEEEEcCCCCEEE-EEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            34677888887655544 444567777777653222222 22222334556666433 1455555555688999888765


Q ss_pred             c--eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecC---------
Q psy8875         580 M--RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLV---------  644 (734)
Q Consensus       580 ~--~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~---------  644 (734)
                      .  ....+.........+++.|.  ..+|+.+..  .+.|...++...  .....+.........|++.+.         
T Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  167 (379)
T 3jrp_A           90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS--DGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN  167 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--------
T ss_pred             ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC--CCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccccc
Confidence            4  22333345567889999987  555555543  466766666544  233334444455678888764         


Q ss_pred             ---CCeEEEEeCCCCeEEEEecCCCc-eEEEE-cCCCCCCCCeEEEEEC----CEEEEEeCCCCceEEEeccCCC
Q psy8875         645 ---QRRLYWVDAKLNEISSCDYNGGN-RRLVL-YSPQTLSHPFSISTFE----DWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       645 ---~~~LYw~D~~~~~I~~~~~dG~~-~~~i~-~~~~~~~~P~gl~v~~----~~lywtd~~~~~v~~~~~~~G~  710 (734)
                         ++.++++-...+.|...++.... ...++ ..........+|++..    +.++++-...+.|...+..++.
T Consensus       168 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          168 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             --CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence               34555555556778777765433 22221 1111223345677742    4555555555666666655554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.44  E-value=0.02  Score=59.62  Aligned_cols=116  Identities=7%  Similarity=-0.041  Sum_probs=78.9

Q ss_pred             cceEEEeeeccC---CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         503 KSATAIDFVFRT---GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       503 ~~~~~i~~d~~~---~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      ..+.+++|.+..   +.++++-...+.|...++..+..... +......+..|++.+..++++++-...+.|.+.++...
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKH-YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEE-EESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeee-ecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            457888998763   45666666788899988875544333 33344567788888756667777666789999999765


Q ss_pred             ceEEEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         580 MRKVLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       580 ~~~~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .....+   ......+..|+++|...+|+.+..  .+.|...++.
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~  191 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGM--DHSLKLWRIN  191 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEET--TSCEEEEESC
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecC--CCCEEEEECC
Confidence            554444   345567889999987666665553  3566666554

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.41  E-value=0.028  Score=58.70  Aligned_cols=209  Identities=8%  Similarity=-0.104  Sum_probs=115.0

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..+.+++|.+....| ++-...+.|+..++..+.. ....+......+..|++.+.+..|+.+ ...+.|.+.++.....
T Consensus         9 ~~i~~~~~s~~~~~l-~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            9 EPISCHAWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             SCCCEEEECTTSSEE-EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEE
T ss_pred             CCeEEEEECCCCCEE-EEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEE-cCCCeEEEEECCCCee
Confidence            355677887755444 4444567787777774431 222233344567789998755555444 4567888888865542


Q ss_pred             E-EEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce----EEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875         582 K-VLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR----NMVIVSDIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       582 ~-~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~----~~lv~~~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      . .+. ......+..+++.|...+|+....  .+.|...+++....    ..+..........|++.+.+..|+.+. ..
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  163 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS-CD  163 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE-TT
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc-CC
Confidence            2 222 334556789999987777777663  35555555544332    111112234567888886555555443 45


Q ss_pred             CeEEEEecCC----------------CceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         656 NEISSCDYNG----------------GNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       656 ~~I~~~~~dG----------------~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.|...++..                ...+.+...........+|++. .+.++++-...+.|...+..+++.+..+.
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            6777777431                0111111111222345567773 33344444445667777776776655554

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.41  E-value=0.024  Score=66.00  Aligned_cols=221  Identities=8%  Similarity=0.063  Sum_probs=125.0

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC---------------CcEEEEecCCCCce-EEEEeCC--
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE---------------KKIYKAPIDEGSER-TVVIEED--  545 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~---------------~~I~~~~l~~g~~~-~~~~~~~--  545 (734)
                      .|+.+++.+.....+........+++|.+..+.||++....               ..|++.++.++... ..+....  
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~  231 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE  231 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence            68888888766544322112245688988888898876432               24888888754433 2333321  


Q ss_pred             CCCccceeeeccCCcEEEEeC-C---CCeEEEEeCCC------C--ceEEEEcCCCCCceeEEEeCCCCeEEEEecC--C
Q psy8875         546 KTIADGLAVDWIYSHIYWTDA-H---KNTIELANFEG------T--MRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--Q  611 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~-~---~~~I~~~~ldG------~--~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~  611 (734)
                      .....++++.+.++.|+++.. .   ...|++.++++      .  ..+.|.... . ...-.+.+..++||++...  .
T Consensus       232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF-E-GEYDYVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS-S-SCEEEEEEETTEEEEEECTTCT
T ss_pred             CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCC-C-cEEEEEeccCCEEEEEECCCCC
Confidence            112347888888888887754 2   46899999874      2  234444222 1 1223466667888887532  2


Q ss_pred             CceEEEeccCCCc---eEEEEEcCC-CCceeEEEecCCCeEEEEeCC--CCeEEEEec-CCCceEEEEcCCCCCCCCeEE
Q psy8875         612 NAKIERAGMDGSH---RNMVIVSDI-KWPNGLTLDLVQRRLYWVDAK--LNEISSCDY-NGGNRRLVLYSPQTLSHPFSI  684 (734)
Q Consensus       612 ~~~I~~~~ldG~~---~~~lv~~~l-~~P~glavD~~~~~LYw~D~~--~~~I~~~~~-dG~~~~~i~~~~~~~~~P~gl  684 (734)
                      ..+|+++++++..   .+.++...- ....++++. .+++|+++-..  ..+|+.+++ +|+..+.+.. +  .....++
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~--~~~v~~~  385 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL-E--VGSVVGY  385 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECC-C--SSEEEEE
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCC-C--CceEEEE
Confidence            4689999998754   244543322 234566664 47778777543  347888888 6664444421 1  1222333


Q ss_pred             EE--ECCEEEEEe--C-CCCceEEEeccCCC
Q psy8875         685 ST--FEDWLYWSD--W-QQKAIYKANKFTGD  710 (734)
Q Consensus       685 ~v--~~~~lywtd--~-~~~~v~~~~~~~G~  710 (734)
                      ++  .++.|+++-  . .-..|+.++..+|+
T Consensus       386 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          386 SGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            33  233555442  1 12356666655554

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.38  E-value=8.9e-05  Score=54.96  Aligned_cols=37  Identities=27%  Similarity=0.640  Sum_probs=32.3

Q ss_pred             CCCcccceeccCC-ceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|+|+.+ +|.|.|++||.+..++++ |.+++.
T Consensus         6 nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~t-C~d~de   43 (53)
T 2bz6_L            6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS-CTPTVE   43 (53)
T ss_dssp             GGGCSSEEEEETTTEEEEECCTTEEECTTSSC-EEECSS
T ss_pred             CCCcCCEeEcCCCCCEEeeCCCCCEECCCCCc-ccCCcc
Confidence            4679999999999 799999999999988777 887654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.049  Score=57.80  Aligned_cols=204  Identities=10%  Similarity=-0.061  Sum_probs=119.6

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      ..+..|+|.+....|+. -...+.|+..+.. +.... .+......+..|++.+.+..|+.+. ..+.|.+.++......
T Consensus       109 ~~v~~~~~s~~~~~l~~-~~~dg~i~i~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSIVT-GVENGELRLWNKT-GALLN-VLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTVM  184 (425)
T ss_dssp             BCEEEEEECTTSSEEEE-EETTSCEEEEETT-SCEEE-EECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEEE
T ss_pred             CceEEEEEcCCCCEEEE-EeCCCeEEEEeCC-CCeee-eccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEE
Confidence            36789999986555554 4456778777744 33333 3333445677888887666566554 4678888888655443


Q ss_pred             EEEcCCCCC---------------ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCe
Q psy8875         583 VLVRSYLDE---------------PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       583 ~l~~~~l~~---------------P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~  647 (734)
                      ..+......               +..+++.+. +.++...  ..+.|...++........+.........|++.+.+..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  261 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPG--PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL  261 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEET-TEEEEEC--GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTE
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEc--CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCE
Confidence            333322222               677888764 5544443  2467777777654433333333445678899876665


Q ss_pred             EEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         648 LYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |+.+. ..+.|...++........+..  ......+|++..+.++++-...+.|...+..+++.+..+.
T Consensus       262 l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  327 (425)
T 1r5m_A          262 LLSAS-DDGTLRIWHGGNGNSQNCFYG--HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI  327 (425)
T ss_dssp             EEEEE-TTSCEEEECSSSBSCSEEECC--CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEc-CCCEEEEEECCCCccceEecC--CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecc
Confidence            55554 557788888765443333321  2334566777543255555555777777766666555554

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.36  E-value=8.9e-05  Score=76.34  Aligned_cols=47  Identities=32%  Similarity=0.923  Sum_probs=42.1

Q ss_pred             cccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         388 GVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       388 ~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      +.|||..+ +++|+|.|.++.++|+|.|++||+|..++++|...++|.
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~   48 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA   48 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence            35899887 899999999999999999999999999999999988874

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.36  E-value=0.00011  Score=55.70  Aligned_cols=37  Identities=30%  Similarity=0.713  Sum_probs=32.0

Q ss_pred             CCCcccceeccC-CceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEK-GGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~-g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|+|++ |+|.|.|++||.+..++++ |.++..
T Consensus         6 nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~t-C~d~~~   43 (59)
T 2wph_E            6 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKS-CEPAVP   43 (59)
T ss_dssp             GGGCSSEEEECSTTCEEEECCTTEEECTTSSC-EEESSS
T ss_pred             CCCcCCEeEeCCCCCEEeeCCCCcEECCCCCc-ccCCCC
Confidence            478999999999 6999999999999988777 887543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.34  E-value=0.18  Score=51.49  Aligned_cols=228  Identities=13%  Similarity=0.033  Sum_probs=131.4

Q ss_pred             cceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+.-++..... ..+......+.+++|.+..+.|+ +-...+.|+..++..+..... +......+..|++.+.+. +
T Consensus        35 g~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~-~  111 (304)
T 2ynn_A           35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWII-VGSDDFRIRVFNYNTGEKVVD-FEAHPDYIRSIAVHPTKP-Y  111 (304)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEE-EEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSS-E
T ss_pred             CcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEE-EECCCCEEEEEECCCCcEEEE-EeCCCCcEEEEEEcCCCC-E
Confidence            4455555554332 23333344567888887655554 445678888888875543333 333445677899986654 4


Q ss_pred             EEEeCCCCeEEEEeCCCC-ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-EEEEEcCCCCceeE
Q psy8875         562 YWTDAHKNTIELANFEGT-MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-NMVIVSDIKWPNGL  639 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~~lv~~~l~~P~gl  639 (734)
                      +++-...+.|.+.++... .....+.........+++.|..+.++.+-. ..+.|...++..... ..+..........+
T Consensus       112 l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~  190 (304)
T 2ynn_A          112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQSTPNFTLTTGQERGVNYV  190 (304)
T ss_dssp             EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTCSSCSEEEECCCTTCEEEE
T ss_pred             EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCCCCccceeccCCcCcEEEE
Confidence            556566788999988654 333344455566789999987766666653 345666666643332 22222222333445


Q ss_pred             EEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         640 TLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       640 avD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++.+. .+.+..+-...+.|...++........+..  .......+++. .+.++++-...+.|...+..+++.+..+.
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~  267 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG--HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC--CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeecc
Confidence            55442 344445555667888888765544333332  22233455553 34455555555777777777777666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.34  E-value=0.0084  Score=70.25  Aligned_cols=183  Identities=13%  Similarity=0.171  Sum_probs=107.2

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-------------CcEEEEecCCCCce-EEEEeCCCCC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-------------KKIYKAPIDEGSER-TVVIEEDKTI  548 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-------------~~I~~~~l~~g~~~-~~~~~~~~~~  548 (734)
                      ..|+.+++++..............+++|.+. +.||++....             .+|++.++.++... ..+.. ....
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~-~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA-TPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC-CTTC
T ss_pred             EEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec-cCCC
Confidence            3588888887665433111111246788888 8888876432             24888887644332 33333 2222


Q ss_pred             ---ccceeeeccCCcEEEEeCC----CCeEEEEeCCCC--c-eEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEE
Q psy8875         549 ---ADGLAVDWIYSHIYWTDAH----KNTIELANFEGT--M-RKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIE  616 (734)
Q Consensus       549 ---p~glAvD~~~~~lY~td~~----~~~I~~~~ldG~--~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~  616 (734)
                         ..++++.+.++.|+++-..    ...|++.++++.  . .+.|... ....... +.+..+.||+....  ...+|+
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~  344 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-LKAQWDF-VDGVGDQLWFVSGDGAPLKKIV  344 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred             CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-CCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence               3467777777777776532    458999998765  3 3444422 2222222 44667788777532  246899


Q ss_pred             EeccCCC--ceEEEEEcCCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEE
Q psy8875         617 RAGMDGS--HRNMVIVSDIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLV  671 (734)
Q Consensus       617 ~~~ldG~--~~~~lv~~~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i  671 (734)
                      ++++++.  ..+.++...-....+++++  +++|+++-.  ...+|+.++++|+..+.+
T Consensus       345 ~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  401 (741)
T 1yr2_A          345 RVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAV  401 (741)
T ss_dssp             EEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEEC
T ss_pred             EEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeec
Confidence            9999873  3445554332223455554  778887753  345788888887755444

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.33  E-value=0.15  Score=53.34  Aligned_cols=211  Identities=10%  Similarity=0.004  Sum_probs=119.4

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC------ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS------ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~------~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      ....+.+++|.+... ++.+-...+.|....+....      ....+ ......+..+++.+....|+ +-...+.|.+.
T Consensus       105 ~~~~v~~~~~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~-t~s~D~~v~lw  181 (354)
T 2pbi_B          105 PCTWVMACAYAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSV-AMHTNYLSACSFTNSDMQIL-TASGDGTCALW  181 (354)
T ss_dssp             SSSCCCEEEECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEE-EECSSCEEEEEECSSSSEEE-EEETTSEEEEE
T ss_pred             CCCCEEEEEECCCCC-EEEEeeCCCCEEEEEEeccccccccccceee-eccCCcEEEEEEeCCCCEEE-EEeCCCcEEEE
Confidence            334567888887544 44455556666665554221      11122 11233456677775544444 55557889999


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      ++........+.........+++.|. .+.++++-. ..+.|...++........+.......++|++.+.+..|+ +-.
T Consensus       182 d~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs-~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s  259 (354)
T 2pbi_B          182 DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG-CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFA-SGS  259 (354)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEE
T ss_pred             eCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEE-EEe
Confidence            98655444344344556677888775 345555542 346777777754433333333345567899986555554 444


Q ss_pred             CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ..+.|...++.......++...........+++. .+.+..+-...+.|...+..+|+.+..+.
T Consensus       260 ~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~  323 (354)
T 2pbi_B          260 DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF  323 (354)
T ss_dssp             TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEE
Confidence            5678888887765444444322222234456663 45555555555677777777777665553

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.33  E-value=0.033  Score=58.83  Aligned_cols=210  Identities=7%  Similarity=0.019  Sum_probs=123.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe------------CCCCCccceeeeccCCcEEEEeCCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE------------EDKTIADGLAVDWIYSHIYWTDAHK  568 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~------------~~~~~p~glAvD~~~~~lY~td~~~  568 (734)
                      ....+.+|+|.+..+.++++-...+.|...++..+.....+..            .....+..|++.+..+.++++-...
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  121 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD  121 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred             cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence            3456788999873455555555678888888875543222210            1234566788876566667776667


Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC---eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCC
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG---WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQ  645 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g---~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~  645 (734)
                      +.|.+.++........+. .......+++.+...   +|+...  ..+.|...++........+.........|++.+.+
T Consensus       122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~  198 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRY  198 (408)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEE--SSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSC
T ss_pred             CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEc--CCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCC
Confidence            899999998765544442 334567777776533   444443  24667777775443333333344456789998777


Q ss_pred             CeEEEEeCCCCeEEEEecCCCce-EEEEcC-------------CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875         646 RRLYWVDAKLNEISSCDYNGGNR-RLVLYS-------------PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       646 ~~LYw~D~~~~~I~~~~~dG~~~-~~i~~~-------------~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+|+++-...+.|...++..... ...+..             ........+|++. .+.++++-...+.|...+..+++
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~  278 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE  278 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence            76666666667888888754321 111100             0112234566773 33344444445677777777666


Q ss_pred             ceE
Q psy8875         711 NLT  713 (734)
Q Consensus       711 ~~~  713 (734)
                      ...
T Consensus       279 ~~~  281 (408)
T 4a11_B          279 NTL  281 (408)
T ss_dssp             BCC
T ss_pred             cce
Confidence            543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.33  E-value=0.087  Score=61.51  Aligned_cols=224  Identities=13%  Similarity=0.106  Sum_probs=130.6

Q ss_pred             ceEEeecC---CCceEEEecC--C-----cceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         484 DIRKISLD---HHEMTAIVNS--T-----KSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       484 ~I~~i~l~---~~~~~~l~~~--~-----~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      .|+++...   +.....++..  +     ....+++|.+..++|.++....    ..|+..++.+|......+. .. ..
T Consensus       134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-~~-~~  211 (741)
T 1yr2_A          134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-WV-KF  211 (741)
T ss_dssp             EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-EE-ES
T ss_pred             EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-Cc-ee
Confidence            45666665   5555554321  1     1456788988888777664332    3589999986654333222 11 12


Q ss_pred             cceeeeccCCcEEEEeCCC-------------CeEEEEeCCCCc--eEEEEcCCC--CCceeEEEeCCCCeEEEEecC--
Q psy8875         550 DGLAVDWIYSHIYWTDAHK-------------NTIELANFEGTM--RKVLVRSYL--DEPRSLALNPIDGWMYWSDWG--  610 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~-------------~~I~~~~ldG~~--~~~l~~~~l--~~P~~iavD~~~g~LYwtd~~--  610 (734)
                      .+++..+. +.||++....             .+|++.++.+..  .+.+.....  ....++++.|...+|+++...  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            45666666 7788876432             358888886543  233433221  134688898877788777642  


Q ss_pred             -CCceEEEeccCCC--c-eEEEEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCC--ceEEEEcCCCCCCCC
Q psy8875         611 -QNAKIERAGMDGS--H-RNMVIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGG--NRRLVLYSPQTLSHP  681 (734)
Q Consensus       611 -~~~~I~~~~ldG~--~-~~~lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~--~~~~i~~~~~~~~~P  681 (734)
                       ....|+..++++.  . .+.|.. ....-... +++.+++||+...   ...+|+.+++++.  ..+.++...  -...
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~--~~~l  366 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALIP-DLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES--KDNL  366 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEEC-SSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC--SSEE
T ss_pred             CCcceEEEEECCCCCCcccEEecC-CCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC--CCeE
Confidence             2458999888765  3 344432 22222222 3467888888753   3567999998873  445555322  1223


Q ss_pred             eEEEEECCEEEEEeCC--CCceEEEeccCCCceEEE
Q psy8875         682 FSISTFEDWLYWSDWQ--QKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       682 ~gl~v~~~~lywtd~~--~~~v~~~~~~~G~~~~~l  715 (734)
                      .++++++++|+++-..  ..+|+.++. +|+..+.|
T Consensus       367 ~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l  401 (741)
T 1yr2_A          367 ESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGAV  401 (741)
T ss_dssp             EEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEEC
T ss_pred             EEEEEECCEEEEEEEECCEEEEEEEeC-CCCceeec
Confidence            4677788888887643  335666664 45544444

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.33  E-value=0.047  Score=58.28  Aligned_cols=223  Identities=7%  Similarity=-0.062  Sum_probs=118.0

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ...|+..++........+... ....+.+....+.++++-...+.|...++..+. ....+......+..|++.+.+. +
T Consensus        77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~  153 (420)
T 3vl1_A           77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREIDQAHVSEITKLKFFPSGE-A  153 (420)
T ss_dssp             TTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEETTSSSSCEEEEEECTTSS-E
T ss_pred             CCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeecccccCccEEEEECCCCC-E
Confidence            344555555433222222222 334443333355555665667888888877432 2222223445677888886554 4


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC---------
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD---------  632 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~---------  632 (734)
                      .++-...+.|.+.++........+.........|++.|...+|+....  .+.|...++........+...         
T Consensus       154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL--DGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET--TSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC--CCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            445555789999998654333333455667889999997666665553  355666665433322222211         


Q ss_pred             ---------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-CE-EEEEe
Q psy8875         633 ---------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-DW-LYWSD  695 (734)
Q Consensus       633 ---------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-~~-lywtd  695 (734)
                                     ......+++++.+..| ++-...+.|...++........+.. .......+|++.. +. ++++-
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEE
Confidence                           1222344555434444 4444567788888765544333321 1223345666632 22 44444


Q ss_pred             CCCCceEEEeccCCCc
Q psy8875         696 WQQKAIYKANKFTGDN  711 (734)
Q Consensus       696 ~~~~~v~~~~~~~G~~  711 (734)
                      ...+.|...+..+++.
T Consensus       310 ~~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          310 YENGMLAQWDLRSPEC  325 (420)
T ss_dssp             ETTSEEEEEETTCTTS
T ss_pred             eCCCeEEEEEcCCCcC
Confidence            4456676666666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.32  E-value=0.01  Score=61.78  Aligned_cols=164  Identities=10%  Similarity=0.041  Sum_probs=99.5

Q ss_pred             CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC----CCeEEEEeCCCCceEEEEcCCCCCceeEEEeC
Q psy8875         524 EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH----KNTIELANFEGTMRKVLVRSYLDEPRSLALNP  599 (734)
Q Consensus       524 ~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~----~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~  599 (734)
                      ...|+.++++++.. ..+     ..+..+++.+.++.|+++...    ...|++.++++...+.+.....  ..++++.|
T Consensus        42 ~~~l~~~d~~~~~~-~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp  113 (347)
T 2gop_A           42 ENTIVIENLKNNAR-RFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE  113 (347)
T ss_dssp             EEEEEEEETTTCCE-EEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT
T ss_pred             cceEEEEeCCCCce-EEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC
Confidence            34678888875443 222     345667888888888887543    3458999988766555543322  78889988


Q ss_pred             CCCeEEEEecC-------------------------CCceEEEeccCCCce-EEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         600 IDGWMYWSDWG-------------------------QNAKIERAGMDGSHR-NMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       600 ~~g~LYwtd~~-------------------------~~~~I~~~~ldG~~~-~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      ...+|+++...                         ....|++.++++... +.+.. .  ....+++.+.+ .+|.+..
T Consensus       114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~  189 (347)
T 2gop_A          114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPH  189 (347)
T ss_dssp             TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEEC
T ss_pred             CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEec
Confidence            87788887521                         135788888877655 44443 2  56778888655 5555543


Q ss_pred             C--------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC-------CCceEEEe
Q psy8875         654 K--------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ-------QKAIYKAN  705 (734)
Q Consensus       654 ~--------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~-------~~~v~~~~  705 (734)
                      .        ...|+.++ . ...+.+...    .....++..+.+|+++...       ...|+.++
T Consensus       190 ~~~~~~~~~~~~l~~~d-~-~~~~~l~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  250 (347)
T 2gop_A          190 REIIPQYFKFWDIYIWE-D-GKEEKMFEK----VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD  250 (347)
T ss_dssp             CCSSCCSSCCEEEEEEE-T-TEEEEEEEE----ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred             ccccccccccccEEEeC-C-CceEEeccC----cceeeECCCCCEEEEEEccccCCccccceEEEEC
Confidence            2        34688877 3 334444321    1222334456667665432       34677776

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.32  E-value=0.093  Score=53.54  Aligned_cols=163  Identities=12%  Similarity=0.005  Sum_probs=88.8

Q ss_pred             CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc--------eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCe
Q psy8875         501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE--------RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNT  570 (734)
Q Consensus       501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~--------~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~  570 (734)
                      ....+.+|+|.+. .+.++++-...+.|...++..+..        ....+......+..|++.+.. +.++++-...+.
T Consensus        56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  135 (351)
T 3f3f_A           56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGI  135 (351)
T ss_dssp             CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCE
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCc
Confidence            4557889999875 355666666678888888775431        122233334556788888662 444445445688


Q ss_pred             EEEEeCCCCce-EE------EE------cCCCCCceeEEEeCC---CCeEEEEecCCCceEEEeccCCCceEEEEE--cC
Q psy8875         571 IELANFEGTMR-KV------LV------RSYLDEPRSLALNPI---DGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SD  632 (734)
Q Consensus       571 I~~~~ldG~~~-~~------l~------~~~l~~P~~iavD~~---~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~  632 (734)
                      |.+.++..... ..      +.      .........+++.|.   ..+|..+. . .+.|............+..  ..
T Consensus       136 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~h  213 (351)
T 3f3f_A          136 LRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA-L-EQAIIYQRGKDGKLHVAAKLPGH  213 (351)
T ss_dssp             EEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE-T-TEEEEEEECTTSCEEEEEECCCC
T ss_pred             EEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec-C-CCcEEEEccCCCceeeeeecCCC
Confidence            98888754321 00      00      023445678888876   44444444 2 2334332222222222221  22


Q ss_pred             CCCceeEEEecCCC---eEEEEeCCCCeEEEEecCC
Q psy8875         633 IKWPNGLTLDLVQR---RLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       633 l~~P~glavD~~~~---~LYw~D~~~~~I~~~~~dG  665 (734)
                      ......|++.+.+.   .++++-...+.|...++..
T Consensus       214 ~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          214 KSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             CSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             CcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            33457888876552   4555555556676666553

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.32  E-value=0.08  Score=53.51  Aligned_cols=221  Identities=10%  Similarity=0.017  Sum_probs=118.4

Q ss_pred             cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeCCCCCccceeeeccCC
Q psy8875         483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      ..|+..++........ ......+.+++|.+....|+.. ...+.|...++.....  ....+......+..|+++   +
T Consensus        39 g~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~  114 (313)
T 3odt_A           39 GTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG-GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ---D  114 (313)
T ss_dssp             SEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE---T
T ss_pred             CcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe-cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec---C
Confidence            4466556655443333 3345678899999866555544 4567777776654321  122222223344555553   4


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCcee
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNG  638 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~g  638 (734)
                      .++++-...+.|.+.+ .+.... .+.........+++.+..+.++++-. ..+.|...+. +. ....+.. .......
T Consensus       115 ~~l~~~~~d~~i~~~d-~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~-~d~~i~i~d~-~~-~~~~~~~~~~~~i~~  189 (313)
T 3odt_A          115 GVVISGSWDKTAKVWK-EGSLVY-NLQAHNASVWDAKVVSFSENKFLTAS-ADKTIKLWQN-DK-VIKTFSGIHNDVVRH  189 (313)
T ss_dssp             TEEEEEETTSEEEEEE-TTEEEE-EEECCSSCEEEEEEEETTTTEEEEEE-TTSCEEEEET-TE-EEEEECSSCSSCEEE
T ss_pred             CEEEEEeCCCCEEEEc-CCcEEE-ecccCCCceeEEEEccCCCCEEEEEE-CCCCEEEEec-Cc-eEEEEeccCcccEEE
Confidence            4555555578888888 333332 23344556778888774444444432 2355665552 11 1222222 3445677


Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +++.+. ++ +++-...+.|...++........+..  ......+|++..+..+++-...+.|...+..+++.+..+.
T Consensus       190 ~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          190 LAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             EEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEE
T ss_pred             EEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEe
Confidence            888744 44 44555667888888765444333332  2334566777433233444445677777776776665554

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.29  E-value=0.22  Score=52.94  Aligned_cols=204  Identities=9%  Similarity=0.035  Sum_probs=112.8

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL  584 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l  584 (734)
                      +.+++|.+....| .+-...+.|+..++..+.. ...+......+..|++.+.+..| ++-...+.|.+.++........
T Consensus       126 v~~v~~s~dg~~l-~s~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          126 IRSVCFSPDGKFL-ATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             EEEEEECTTSSEE-EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEE
T ss_pred             EEEEEECCCCCEE-EEEcCCCeEEEEECCCCcE-EEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEE
Confidence            6789998755544 4555678888888874432 22333334456778887665555 4555578899999876544333


Q ss_pred             EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-------cCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         585 VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-------SDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       585 ~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-------~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      + ........+++.|..+.++.+-. ..+.|...++........+.       ........|++.+.+..|+.+ ...+.
T Consensus       203 ~-~~~~~v~~~~~~~~~~~~l~~~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~  279 (393)
T 1erj_A          203 L-SIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRS  279 (393)
T ss_dssp             E-ECSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSE
T ss_pred             E-EcCCCcEEEEEECCCCCEEEEEc-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCE
Confidence            3 23345788999886676666543 23566666654332221121       122345678888666655544 44567


Q ss_pred             EEEEecCCCce------------EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         658 ISSCDYNGGNR------------RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       658 I~~~~~dG~~~------------~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |...++.....            ...+.  .......++++. .+.++++-...+.|...+..+|+.+..+.
T Consensus       280 v~~wd~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          280 VKLWNLQNANNKSDSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             EEEEEC---------------CEEEEEE--CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCCCcccccCCCCCcceEEEe--cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence            77777653211            11111  111223455552 33344444445666666766666655553

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.26  E-value=0.079  Score=59.57  Aligned_cols=207  Identities=8%  Similarity=-0.094  Sum_probs=120.0

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+.+++|.+....|+......   +.|+..+  .+. ....+......+..+++.+.+..++++-...+.|.+.++.
T Consensus       115 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~  191 (615)
T 1pgu_A          115 LAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP  191 (615)
T ss_dssp             CSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT
T ss_pred             ccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC-cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCC
Confidence            345678999998777777665432   3455444  222 2222333445677888887766577777777899999987


Q ss_pred             CCceEEEEcCCCC---CceeEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEE-E---cCCCCceeEEEecCCCeEE
Q psy8875         578 GTMRKVLVRSYLD---EPRSLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVI-V---SDIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       578 G~~~~~l~~~~l~---~P~~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv-~---~~l~~P~glavD~~~~~LY  649 (734)
                      .......+.....   ....+++.|. ..+|+....  .+.|...++........+ .   ........|++.  .+.++
T Consensus       192 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l  267 (615)
T 1pgu_A          192 PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKF  267 (615)
T ss_dssp             TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEE
T ss_pred             CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--CCeEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEE
Confidence            6554444444444   6789999997 555555542  467777776544333333 2   233445778886  44444


Q ss_pred             EEeCCCCeEEEEecCCCceEEEEcCC-C-CCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         650 WVDAKLNEISSCDYNGGNRRLVLYSP-Q-TLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG~~~~~i~~~~-~-~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++-...+.|...++........+... . ......++.+ .+++|+... ..+.|...+..+++.+..+
T Consensus       268 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~i~~~d~~~~~~~~~~  335 (615)
T 1pgu_A          268 ATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS-LDGTLNFYELGHDEVLKTI  335 (615)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEE-TTSCEEEEETTEEEEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEE-CCCCEEEEECCCCcEEEEE
Confidence            45445678888887744333333221 1 1123445555 444444444 4466776666555544444

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.26  E-value=0.068  Score=61.89  Aligned_cols=224  Identities=8%  Similarity=0.009  Sum_probs=131.4

Q ss_pred             ceEEeecCCCceEEEecCC-------cceEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCc--c
Q psy8875         484 DIRKISLDHHEMTAIVNST-------KSATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIA--D  550 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~-------~~~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p--~  550 (734)
                      .|+++...+.....|+...       ....+++|.+..++|.++-...    ..|+..++.+|....   ...+...  .
T Consensus        95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~---~~~~~~~~~~  171 (695)
T 2bkl_A           95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK---VDVIEGGKYA  171 (695)
T ss_dssp             EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS---SCCBSCCTTC
T ss_pred             EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC---CcccCccccc
Confidence            3677776666666664321       1467788998888777664433    469999998654320   1112222  5


Q ss_pred             ceeeeccCCcEEEEeCCC------------CeEEEEeCCCCc--eEEEEcCC--CCCceeEEEeCCCCeEEEEecCC--C
Q psy8875         551 GLAVDWIYSHIYWTDAHK------------NTIELANFEGTM--RKVLVRSY--LDEPRSLALNPIDGWMYWSDWGQ--N  612 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~------------~~I~~~~ldG~~--~~~l~~~~--l~~P~~iavD~~~g~LYwtd~~~--~  612 (734)
                      +++..+.++.||++....            ..|++.++.+..  .+.+....  .....++++.|...+|+++....  .
T Consensus       172 ~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~  251 (695)
T 2bkl_A          172 TPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSE  251 (695)
T ss_dssp             CCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTE
T ss_pred             ceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCc
Confidence            677776777888886532            349999987654  23343321  12446889999888888776432  3


Q ss_pred             ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEE
Q psy8875         613 AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGGNR---RLVLYSPQTLSHPFSIST  686 (734)
Q Consensus       613 ~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v  686 (734)
                      ..|+..+..+...+.|... ......... +.++ ||+...   ...+|+++++++...   +.++... ......++++
T Consensus       252 ~~l~~~~~~~~~~~~l~~~-~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~l~~~~~  327 (695)
T 2bkl_A          252 NDVYWKRPGEKDFRLLVKG-VGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED-SSASLLSVSI  327 (695)
T ss_dssp             EEEEEECTTCSSCEEEEEC-SSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC-SSCEEEEEEE
T ss_pred             eEEEEEcCCCCceEEeecC-CCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC-CCCeEEEEEE
Confidence            5788877655444444432 222222322 4455 777643   457899999876652   5555321 1112356777


Q ss_pred             ECCEEEEEeCC--CCceEEEeccCCCceEEE
Q psy8875         687 FEDWLYWSDWQ--QKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       687 ~~~~lywtd~~--~~~v~~~~~~~G~~~~~l  715 (734)
                      ++++|+++-..  ..+|+.++. +|+..+.|
T Consensus       328 ~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~l  357 (695)
T 2bkl_A          328 VGGHLSLEYLKDATSEVRVATL-KGKPVRTV  357 (695)
T ss_dssp             ETTEEEEEEEETTEEEEEEEET-TCCEEEEC
T ss_pred             ECCEEEEEEEECCEEEEEEEeC-CCCeeEEe
Confidence            88988887643  345666654 45544444

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.24  E-value=0.01  Score=69.00  Aligned_cols=181  Identities=14%  Similarity=0.148  Sum_probs=106.4

Q ss_pred             cceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeC------------CCcEEEEecCCCCce-EEEEeCCCC-
Q psy8875         483 HDIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDIS------------EKKIYKAPIDEGSER-TVVIEEDKT-  547 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~------------~~~I~~~~l~~g~~~-~~~~~~~~~-  547 (734)
                      ..|+.+++.+.+.... +... ...+++|. ..+.||++...            ..+|++..+..+... +.+.. ... 
T Consensus       155 ~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~-~~~~  231 (693)
T 3iuj_A          155 REIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFG-AIPA  231 (693)
T ss_dssp             EEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEES-CSGG
T ss_pred             EEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEe-cCCC
Confidence            4577778877664332 1111 11345676 67788887543            245888887644332 33333 222 


Q ss_pred             C---ccceeeeccCCcEEEEeCC---CCeEEEEeCCCC--ceEEEEcCCCCCceeEEEeCCCCeEEEEecC--CCceEEE
Q psy8875         548 I---ADGLAVDWIYSHIYWTDAH---KNTIELANFEGT--MRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--QNAKIER  617 (734)
Q Consensus       548 ~---p~glAvD~~~~~lY~td~~---~~~I~~~~ldG~--~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--~~~~I~~  617 (734)
                      .   ..++++.+.++.|+++...   ...|++.++++.  ..+.|... ...-.. .+++..+.||++...  ...+|++
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~  309 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-LDADVS-LVDNKGSTLYLLTNRDAPNRRLVT  309 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-SSSCEE-EEEEETTEEEEEECTTCTTCEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-CCceEE-EEeccCCEEEEEECCCCCCCEEEE
Confidence            1   2466777777778776542   358999998654  33344422 221122 256667888877543  2479999


Q ss_pred             eccCCCce---EEEEEcCCCCceeEEEecCCCeEEEEeCC--CCeEEEEecCCCceEEE
Q psy8875         618 AGMDGSHR---NMVIVSDIKWPNGLTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLV  671 (734)
Q Consensus       618 ~~ldG~~~---~~lv~~~l~~P~glavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i  671 (734)
                      +++++...   +.++...-...   .+++.+++|+++...  ..+|+.++++|...+.+
T Consensus       310 ~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l  365 (693)
T 3iuj_A          310 VDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV  365 (693)
T ss_dssp             EETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             EeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe
Confidence            99987654   55554332222   555568888887543  34789999998766555

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.23  E-value=0.00018  Score=56.92  Aligned_cols=61  Identities=21%  Similarity=0.352  Sum_probs=42.2

Q ss_pred             cccccccCCCCCc--CccccCCCcceee-cCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeCC
Q psy8875         388 GVDECAKDNGGCL--HKCVDLPVGYMCE-CNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~-C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      +||||...+..|.  +.|+|++++|+|. +..||.+..++..+..  +       .+     .+...+.|++||.++.
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~~~~~--~-------~~-----~~~~~~~C~~Gy~~~~   65 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPP--P-------VP-----PAQHPNPCPPGYEPDD   65 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCSSCCC--S-------SC-----SCSSCCCSCTTEEEEC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCCcccc--c-------cc-----cCccccCCCCCeeeCC
Confidence            5789987666785  4899999999998 5568987766654321  1       11     1222458999999874

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.20  E-value=0.073  Score=55.82  Aligned_cols=160  Identities=12%  Similarity=0.046  Sum_probs=99.9

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE---EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV---IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~---~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      ..+.+|+|.+. ++|. +-...+.|+..++..+....+.   ...-...+..|++.+.++ +.++-...+.|.+.++...
T Consensus        83 ~~v~~~~~s~d-~~l~-~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~  159 (344)
T 4gqb_B           83 AGVADLTWVGE-RGIL-VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQ  159 (344)
T ss_dssp             SCEEEEEEETT-TEEE-EEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTT
T ss_pred             CCEEEEEEeCC-CeEE-EEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCC
Confidence            34678888864 4443 5556788888888755443222   122234567888886544 4455555688999998765


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEE-EcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVI-VSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv-~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      .....+.........+++.+....++.+-. ..+.|...++.... ...+. ......+..+++.+.+++++.+-...+.
T Consensus       160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~  238 (344)
T 4gqb_B          160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCS-EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT  238 (344)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEE-TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE
T ss_pred             cEEEEEcCcCCceEEEEecCCCCCceeeec-cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc
Confidence            554445455667789999887777777653 23566666664333 22221 1223346788888777777777666778


Q ss_pred             EEEEecCCC
Q psy8875         658 ISSCDYNGG  666 (734)
Q Consensus       658 I~~~~~dG~  666 (734)
                      |...++...
T Consensus       239 v~~wd~~~~  247 (344)
T 4gqb_B          239 VSLVDTKST  247 (344)
T ss_dssp             EEEEESCC-
T ss_pred             EEEEECCCC
Confidence            888887543

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.17  E-value=0.00039  Score=75.37  Aligned_cols=117  Identities=23%  Similarity=0.579  Sum_probs=71.4

Q ss_pred             CCCCCCCCCCCCccCccccccCCCCCCCcccCCCcccCCCCCccccCCCCCccCCCccccccCC-C----CCCCCCCcee
Q psy8875         159 DCSDKSDEDPEMCNGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAG-S----KPCRNSTMFR  233 (734)
Q Consensus       159 dC~dgsde~~~~C~~~~~C~~~~~~C~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~~~~~~-~----~~C~~~~~~~  233 (734)
                      .|.+|+.+..        |..   .| .+|.+.++|.+  ..+.|.|++||.|..|+..|.+.. .    .+|.  ..-.
T Consensus       188 ~C~~g~~G~~--------C~~---~C-~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~--~~~~  251 (423)
T 2gy5_A          188 RCEAQKWGPE--------CNH---LC-TACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCS--GQEG  251 (423)
T ss_dssp             SSCTTEESTT--------SCE---EC-CCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECC--STTT
T ss_pred             cCCCCCCCCC--------CCC---CC-CCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCC--CCCC
Confidence            4777665544        432   23 25777777765  467899999999999987654310 0    1232  1122


Q ss_pred             eC-CCceecCcCCCCCCCCCCCCCCCCCCCCCCCCCce--------ecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         234 CT-GGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSDEF--------TCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       234 C~-~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~~~--------~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                      |. ++.|.+..+.|.    |..|+.+.+|+..|.++.+        .|.++ +|++... |    .|..|+.+.+|+
T Consensus       252 C~~~g~C~~~~~~C~----C~~G~~G~~C~~~C~~G~~G~~C~~~C~C~ngg~C~~~~~-C----~C~~G~~G~~Ce  319 (423)
T 2gy5_A          252 CKSYVFCLPDPYGCS----CATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQG-C----LCSPGWQGLQCE  319 (423)
T ss_dssp             TTTCCEEETTTTEEE----CCBTCBSGGGCBCCCTTBCSBTTCCBCCCTTCCEEETTTE-E----ECCTTCBSTTSC
T ss_pred             CCCCCEECCCCCeEE----eCCCcccccccCccCCCCcCCcccccccCCCCCEecCCCc-e----ECCCCCcCCCCc
Confidence            43 367888888887    9999998888755654422        34444 5655432 5    566666665555

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.16  E-value=0.067  Score=55.32  Aligned_cols=179  Identities=10%  Similarity=-0.002  Sum_probs=99.2

Q ss_pred             ccceEEeecCCCc--eEEEecCCcceEEEee------eccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCc
Q psy8875         482 KHDIRKISLDHHE--MTAIVNSTKSATAIDF------VFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIA  549 (734)
Q Consensus       482 ~~~I~~i~l~~~~--~~~l~~~~~~~~~i~~------d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p  549 (734)
                      ...|+..++....  ...+......+.++++      .+. +.++++-...+.|...++..+......+...    ....
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            4456666665443  3333334455677754      343 4444555567888888887554222222211    1133


Q ss_pred             ccee----eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeC---CCCeEEEEecCCCceEEEeccCC
Q psy8875         550 DGLA----VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNP---IDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       550 ~glA----vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~---~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                      ..++    +.+ .++++++-...+.|.+.++......... .....+..+++.|   ...+|+....  .+.|...++..
T Consensus       168 ~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~  243 (357)
T 3i2n_A          168 WTVAFGNAYNQ-EERVVCAGYDNGDIKLFDLRNMALRWET-NIKNGVCSLEFDRKDISMNKLVATSL--EGKFHVFDMRT  243 (357)
T ss_dssp             EEEEEECCCC--CCCEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEESCSSSSCCEEEEEES--TTEEEEEEEEE
T ss_pred             EEEEEEeccCC-CCCEEEEEccCCeEEEEECccCceeeec-CCCCceEEEEcCCCCCCCCEEEEECC--CCeEEEEeCcC
Confidence            4455    333 4455555555689999999876654333 3345788999998   5556665542  35665555432


Q ss_pred             Cc-eEEE----EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         623 SH-RNMV----IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       623 ~~-~~~l----v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      .. ...+    ..........|++.+.+..++++-...+.|...++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  291 (357)
T 3i2n_A          244 QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEY  291 (357)
T ss_dssp             EETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEEC
T ss_pred             CCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCC
Confidence            21 1111    1134455678888865554666666667777777653

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.15  E-value=0.0027  Score=70.24  Aligned_cols=109  Identities=14%  Similarity=0.106  Sum_probs=77.8

Q ss_pred             CCCCccceeeeccCCcEEEEeCC---------------------CCeEEEEeCCCCc-------eEEEE-c---------
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAH---------------------KNTIELANFEGTM-------RKVLV-R---------  586 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~---------------------~~~I~~~~ldG~~-------~~~l~-~---------  586 (734)
                      .+..|++|++++.++.||++-..                     .+.|++...++..       -.+++ .         
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            45679999999999999999543                     2678888775421       12222 1         


Q ss_pred             -----------CCCCCceeEEEeCCCCeEEE-EecCC----------CceEEEeccCCCceEEEEEc-CCCCceeEEEec
Q psy8875         587 -----------SYLDEPRSLALNPIDGWMYW-SDWGQ----------NAKIERAGMDGSHRNMVIVS-DIKWPNGLTLDL  643 (734)
Q Consensus       587 -----------~~l~~P~~iavD~~~g~LYw-td~~~----------~~~I~~~~ldG~~~~~lv~~-~l~~P~glavD~  643 (734)
                                 ..+..|.+|++|+ .|.||+ ||.+.          +..+++++.+....+.++.. ....|+||++.+
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP  540 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence                       1368999999997 588999 88431          23789988854444445543 356799999999


Q ss_pred             CCCeEEEEeCC
Q psy8875         644 VQRRLYWVDAK  654 (734)
Q Consensus       644 ~~~~LYw~D~~  654 (734)
                      ...+||++-..
T Consensus       541 D~ktLfV~vQH  551 (592)
T 4a9v_A          541 DQKTLFVGIQH  551 (592)
T ss_dssp             TSSEEEEEEES
T ss_pred             CCCEEEEEEeC
Confidence            99999999643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.14  E-value=0.024  Score=58.83  Aligned_cols=202  Identities=7%  Similarity=-0.108  Sum_probs=108.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCceEEEEeCCCCCccceeeeccC--CcEEEEeCCCCeEEEEeC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY--SHIYWTDAHKNTIELANF  576 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~--~~lY~td~~~~~I~~~~l  576 (734)
                      ...+.+|+|.+....+..+...   .+.|+..++..+.............+..+++.+..  +.++++-...+.|.+.++
T Consensus        18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            3467788888866666665543   67788878775543333222233456777877663  455555555788999998


Q ss_pred             CCCc-eEEEEcCCCCCceeEE------EeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCC----CCceeEE----
Q psy8875         577 EGTM-RKVLVRSYLDEPRSLA------LNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDI----KWPNGLT----  640 (734)
Q Consensus       577 dG~~-~~~l~~~~l~~P~~ia------vD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l----~~P~gla----  640 (734)
                      .... ....+.........++      +.+...+|+....  .+.|...++.... ....+....    .....++    
T Consensus        98 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  175 (357)
T 3i2n_A           98 EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA  175 (357)
T ss_dssp             TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET--TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC
T ss_pred             CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC--CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEec
Confidence            7554 3333334444556664      4455555555542  4567777765443 222221111    1234455    


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE----CCEEEEEeCCCCceEEEeccCC
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF----EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~----~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      +.+ .+.++++-...+.|...++..........   .......|++.    .+.++++-...+.|...+..++
T Consensus       176 ~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          176 YNQ-EERVVCAGYDNGDIKLFDLRNMALRWETN---IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CC--CCCEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             cCC-CCCEEEEEccCCeEEEEECccCceeeecC---CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            333 34444444456788888887665543332   12334566663    3444444444455555554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.22  Score=50.13  Aligned_cols=199  Identities=11%  Similarity=0.029  Sum_probs=114.6

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+.+++++  .+ ++++-...+.|+..+ . +.. ...+......+..+++.+..+.++++-...+.|.+.+.. ..
T Consensus       103 ~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d-~-~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~  175 (313)
T 3odt_A          103 HQGNVCSLSFQ--DG-VVISGSWDKTAKVWK-E-GSL-VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND-KV  175 (313)
T ss_dssp             CSSCEEEEEEE--TT-EEEEEETTSEEEEEE-T-TEE-EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT-EE
T ss_pred             cccCEEEEEec--CC-EEEEEeCCCCEEEEc-C-CcE-EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC-ce
Confidence            44566778774  34 444545667777766 2 222 223333444566777776456666666667888888832 22


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ...+..........+++.|.. .|+...  ..+.|...++........+.........|++.+.+ +|+ +-...+.|..
T Consensus       176 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~-~~~~dg~v~i  250 (313)
T 3odt_A          176 IKTFSGIHNDVVRHLAVVDDG-HFISCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIV-SCGEDRTVRI  250 (313)
T ss_dssp             EEEECSSCSSCEEEEEEEETT-EEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEE-EEETTSEEEE
T ss_pred             EEEEeccCcccEEEEEEcCCC-eEEEcc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEE-EEecCCEEEE
Confidence            223332255667889998754 444443  34678887776444443444445567889997655 544 4445678998


Q ss_pred             EecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         661 CDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       661 ~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      .++........+..  ......+|++. .+.|+ +-...+.|...+..+++....
T Consensus       251 wd~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          251 WSKENGSLKQVITL--PAISIWSVDCMSNGDII-VGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             ECTTTCCEEEEEEC--SSSCEEEEEECTTSCEE-EEETTSCEEEEESCGGGCCC-
T ss_pred             EECCCCceeEEEec--cCceEEEEEEccCCCEE-EEeCCCcEEEEeCCCCceeeh
Confidence            88765554444432  12344567774 34444 444456777777666654433

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=97.13  E-value=0.00019  Score=67.77  Aligned_cols=43  Identities=37%  Similarity=0.894  Sum_probs=37.7

Q ss_pred             cccccccCCCC---CcCccccCCCcceeecCCCcEecCCCCccccc
Q psy8875         388 GVDECAKDNGG---CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI  430 (734)
Q Consensus       388 ~~~eC~~~~~~---C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~  430 (734)
                      +++||...++.   |++.|.|++++|+|.|++||.|..++++|+++
T Consensus       123 di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~C~~~  168 (170)
T 1szb_A          123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSEQ  168 (170)
T ss_dssp             ECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred             ccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCccccc
Confidence            67888866554   99999999999999999999999999999764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.08  E-value=0.021  Score=60.27  Aligned_cols=181  Identities=10%  Similarity=0.012  Sum_probs=111.3

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCCCCCccceeeeccCC
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EEDKTIADGLAVDWIYS  559 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~~~~p~glAvD~~~~  559 (734)
                      ...|+..++.......... ....+.+|+|.+..+.++.+-...+.|+..++..+.....+. ......+..|++.+..+
T Consensus       160 dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~  239 (357)
T 4g56_B          160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD  239 (357)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc
Confidence            3456666665444333332 345678899987777777777778888888876544322221 11223456788877778


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL  639 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gl  639 (734)
                      +++.+-...+.|.+.++........+.........|++.|..+.+..+-. ..+.|...+++.......+ ..-...++|
T Consensus       240 ~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs-~D~~i~iwd~~~~~~~~~~-~H~~~V~~v  317 (357)
T 4g56_B          240 DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASIS-EDCTVAVLDADFSEVFRDL-SHRDFVTGV  317 (357)
T ss_dssp             TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTSCEEEEEC-CCSSCEEEE
T ss_pred             ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEe-CCCEEEEEECCCCcEeEEC-CCCCCEEEE
Confidence            88877666788999988654433334344556789999887665555432 3466777776644322221 223456788


Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecC
Q psy8875         640 TLDLVQRRLYWVDAKLNEISSCDYN  664 (734)
Q Consensus       640 avD~~~~~LYw~D~~~~~I~~~~~d  664 (734)
                      ++.+..+.++.+-...+.|...++.
T Consensus       318 afsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          318 AWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEeCCCCCEEEEEcCCCeEEEEECC
Confidence            8876566666665556666666654

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=97.07  E-value=0.00039  Score=75.42  Aligned_cols=81  Identities=23%  Similarity=0.543  Sum_probs=57.0

Q ss_pred             CccccCCCCCccCCCccccccCCCCCCCCCCceeeCCCceecCcCCCCCCCCCCCCCCCCCCCCCCCCC-----------
Q psy8875         200 KISCACPEGLKLLPDLLMCAEAGSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRSD-----------  268 (734)
Q Consensus       200 ~~~C~C~~G~~~~~~~~~~~~~~~~~C~~~~~~~C~~g~Ci~~~~~Cdg~~dC~dg~de~~C~~~C~~~-----------  268 (734)
                      .+.|.|++||.|..|+..|.     +|.       ++|+|++.+..|.    |..|+.+.+|+..|.+.           
T Consensus       184 ~~~c~C~~g~~G~~C~~~C~-----~C~-------~~G~C~~~~g~C~----C~~G~~G~~Ce~~C~~g~~g~~C~~~C~  247 (423)
T 2gy5_A          184 LIVRRCEAQKWGPECNHLCT-----ACM-------NNGVCHEDTGECI----CPPGFMGRTCEKACELHTFGRTCKERCS  247 (423)
T ss_dssp             EEECSSCTTEESTTSCEECC-----CCC-------TTCEECTTTCCEE----CCTTEESTTSCEECCTTEESTTSCEECC
T ss_pred             ccCCcCCCCCCCCCCCCCCC-----CCC-------CCCEEECCCCcEe----CCCCccCCCcccccCCCCCCCCcCccCC
Confidence            34689999999988876542     565       3577777677777    99999998887444332           


Q ss_pred             -ceecCCC-CeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         269 -EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       269 -~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                       .-.|.++ .|.+..+.|    .|..|+.+.+|+
T Consensus       248 ~~~~C~~~g~C~~~~~~C----~C~~G~~G~~C~  277 (423)
T 2gy5_A          248 GQEGCKSYVFCLPDPYGC----SCATGWKGLQCN  277 (423)
T ss_dssp             STTTTTTCCEEETTTTEE----ECCBTCBSGGGC
T ss_pred             CCCCCCCCCEECCCCCeE----EeCCCccccccc
Confidence             1124443 676677777    788888887776

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=97.06  E-value=0.00037  Score=79.54  Aligned_cols=127  Identities=22%  Similarity=0.488  Sum_probs=82.6

Q ss_pred             ecC-CCceecCcCccCCCCCCCCCCccccccc-----------CcccCC--ceeccCCCCeeeCCCCCCCCCCCCC----
Q psy8875          61 RCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQK-----------RICGQE--EFTCRSSPGECVPLTWMCDDNPDCS----  122 (734)
Q Consensus        61 ~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~~-----------~~C~~~--~~~C~~~~~~Ci~~~~~Cdg~~dC~----  122 (734)
                      .|. +|.|+      .|...|..|+.+.+|+.           ..|...  ...|.++ |.|+.      |...|.    
T Consensus       436 ~Cs~~G~C~------~g~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~-G~C~~------G~C~C~~~~~  502 (687)
T 3k6s_B          436 LCHGKGFLE------CGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGL-GDCVC------GQCLCHTSDV  502 (687)
T ss_dssp             TGGGSEEES------SSSEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSS-EEEET------TEEEECCCCS
T ss_pred             CCCCCCEEe------CCEeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCC-CEEeC------CEEEcCCCCC
Confidence            454 45666      35668899999888862           136542  2358776 88983      566888    


Q ss_pred             --CCCCcCCCC--CCCcccc-cCcCCC---CceEeCccccCCCCCCCCCCCCCCCCccCccccccCCCCCC----CcccC
Q psy8875         123 --DGSDEKSCK--NRTCQAS-EFRCGN---NRCIPNHWQCDGEFDCSDKSDEDPEMCNGVNHCAAVNGHCS----HLCLP  190 (734)
Q Consensus       123 --dg~de~~C~--~~~C~~~-~f~C~~---g~Ci~~~~~Cdg~~dC~dgsde~~~~C~~~~~C~~~~~~C~----~~C~~  190 (734)
                        .|+.+..|+  ...|... ...|.+   |+|+.      |...|..|+.+..  |+    |......|.    ..|.+
T Consensus       503 ~~~G~~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~~------g~C~C~~G~~G~~--Ce----c~~~~~~C~~~~g~~Cs~  570 (687)
T 3k6s_B          503 PGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC------GKCRCHPGFEGSA--CQ----CERTTEGCLNPRRVECSG  570 (687)
T ss_dssp             TTCCEESTTSCEESSCSCEETTEETSHHHHEEEET------TEEEECTTCCSTT--SC----SCCSSCTTBCTTCSBTSS
T ss_pred             CCCCccccccccccccccCCCCcCcCCCCCCeEEC------CEEEcCCCCcCCC--Cc----cCCCCCCCCCCCCCCCCC
Confidence              888888886  4567643 234663   67773      4566888887766  43    112223442    25777


Q ss_pred             CCcccCCCCCccccCCCCCccCCCcc
Q psy8875         191 APQINAHSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       191 ~~~~~~~~~~~~C~C~~G~~~~~~~~  216 (734)
                      .+.|..    ..|.|++||.|..|+.
T Consensus       571 ~G~C~~----g~C~C~~Gy~G~~Ce~  592 (687)
T 3k6s_B          571 RGRCRC----NVCECHSGYQLPLCQE  592 (687)
T ss_dssp             SCCBCS----SCBCCSTTCCTTTTCC
T ss_pred             CCcCCC----CEEECCCCCcCCCCCC
Confidence            777764    4799999999988775

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.05  E-value=0.14  Score=52.12  Aligned_cols=204  Identities=10%  Similarity=-0.033  Sum_probs=109.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce---EEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER---TVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~---~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ld  577 (734)
                      ...+..|+|++....| ++-...+.|+..++..+...   ...+......+..|++.+. .+.++++-...+.|.+.++.
T Consensus        11 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~   89 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHV-ATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED   89 (351)
T ss_dssp             SSCEEEEEECSSSSEE-EEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred             ccceeEEEEcCCCCEE-EEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence            3467788888755444 44456677877777644321   1122233445667777654 35666666667889988886


Q ss_pred             CCc---------eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCCc-eEEE-----EE-------cCC
Q psy8875         578 GTM---------RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGSH-RNMV-----IV-------SDI  633 (734)
Q Consensus       578 G~~---------~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~~-~~~l-----v~-------~~l  633 (734)
                      ...         ....+........+|++.|.  ..+|+.+..  .+.|...++.... ...+     +.       ...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN--DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC--CCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            542         22233344567789999987  555555542  3566666653322 1100     00       122


Q ss_pred             CCceeEEEecC---CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECC-----EEEEEeCCCCceEEEe
Q psy8875         634 KWPNGLTLDLV---QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED-----WLYWSDWQQKAIYKAN  705 (734)
Q Consensus       634 ~~P~glavD~~---~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~-----~lywtd~~~~~v~~~~  705 (734)
                      .....+++.+.   ...|..+.. .+.|............+...........+|++..+     .++++-...+.|...+
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSAL-EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEET-TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecC-CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence            34456777654   444544443 34443333333333333322222233456777443     5666666666676666


Q ss_pred             ccCC
Q psy8875         706 KFTG  709 (734)
Q Consensus       706 ~~~G  709 (734)
                      ..++
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            5554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.03  E-value=0.51  Score=50.94  Aligned_cols=221  Identities=12%  Similarity=0.042  Sum_probs=119.0

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeec-cCCeEEEEEeCCCcEEEEecCCCCceE--------------------
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVF-RTGMIFWSDISEKKIYKAPIDEGSERT--------------------  539 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~-~~~~lyw~d~~~~~I~~~~l~~g~~~~--------------------  539 (734)
                      +..|+..++.......... ....+.++++.+ ..+.++++-...+.|...++..+....                    
T Consensus       182 dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (464)
T 3v7d_B          182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY  261 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTT
T ss_pred             CCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeE
Confidence            3456666665444333333 445667788875 244566666667788877776443211                    


Q ss_pred             --EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875         540 --VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER  617 (734)
Q Consensus       540 --~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~  617 (734)
                        ..+......+  .++.+..+ +.++-...+.|.+.++........+.........++++|...+|+....  .+.|..
T Consensus       262 ~~~~~~~~~~~v--~~~~~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~--dg~i~v  336 (464)
T 3v7d_B          262 FVGVLRGHMASV--RTVSGHGN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM--DTTIRI  336 (464)
T ss_dssp             EEEEECCCSSCE--EEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEET--TSCEEE
T ss_pred             EEEEccCccceE--EEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeC--CCcEEE
Confidence              1111111122  33443344 4444445688999998765554445455667889999997666666553  467777


Q ss_pred             eccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCC
Q psy8875         618 AGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQ  697 (734)
Q Consensus       618 ~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~  697 (734)
                      .++........+.........|+++  ..+| ++-...+.|...++....+...... ........+...+..|....  
T Consensus       337 wd~~~~~~~~~~~~h~~~v~~~~~~--~~~l-~s~s~dg~v~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~--  410 (464)
T 3v7d_B          337 WDLENGELMYTLQGHTALVGLLRLS--DKFL-VSAAADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDNILVSGS--  410 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEC--SSEE-EEEETTSEEEEEETTTCCEEEEEEC-TTCCCEEEEEECSSEEEEEE--
T ss_pred             EECCCCcEEEEEeCCCCcEEEEEEc--CCEE-EEEeCCCcEEEEECCCCceeeeecC-CCCccEEEEEeCCCEEEEec--
Confidence            7775443333333334445667764  4444 4444567888888876554443321 11111122222333333333  


Q ss_pred             CCceEEEeccCCCceE
Q psy8875         698 QKAIYKANKFTGDNLT  713 (734)
Q Consensus       698 ~~~v~~~~~~~G~~~~  713 (734)
                      .+.|...+..+|+.+.
T Consensus       411 dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          411 ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             TTEEEEEETTTCCEEE
T ss_pred             CCeEEEEECCCCcEEe
Confidence            4566666666665443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.03  E-value=0.5  Score=50.82  Aligned_cols=218  Identities=9%  Similarity=0.028  Sum_probs=122.2

Q ss_pred             ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++....... +......+.+++++   +.++++-...+.|+..++..+..... +......+..++++   +.
T Consensus       138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~h~~~v~~~~~~---~~  210 (445)
T 2ovr_B          138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHT-LYGHTSTVRCMHLH---EK  210 (445)
T ss_dssp             TSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEE-ECCCSSCEEEEEEE---TT
T ss_pred             CCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEE-ECCCCCcEEEEEec---CC
Confidence            4456666665443332 22334566778876   33555666778898888875533322 22233345556654   34


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      .+++-...+.|.+.++........+.........++++  ..+|+....  .+.|...++........+.........|+
T Consensus       211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  286 (445)
T 2ovr_B          211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY--DFMVKVWDPETETCLHTLQGHTNRVYSLQ  286 (445)
T ss_dssp             EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEET--TSCEEEEEGGGTEEEEEECCCSSCEEEEE
T ss_pred             EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEcC--CCEEEEEECCCCcEeEEecCCCCceEEEE
Confidence            45555567899999987555444444555566777773  344554442  35666666654332222222223344555


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +  .+..|+.+ ...+.|...++........+..  ......++++.++.|+... ..+.|...+..+++.+..+.
T Consensus       287 ~--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          287 F--DGIHVVSG-SLDTSIRVWDVETGNCIHTLTG--HQSLTSGMELKDNILVSGN-ADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             E--CSSEEEEE-ETTSCEEEEETTTCCEEEEECC--CCSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred             E--CCCEEEEE-eCCCeEEEEECCCCCEEEEEcC--CcccEEEEEEeCCEEEEEe-CCCeEEEEECCCCcEEEEEc
Confidence            5  35555444 4567888888765544333332  2334456677766555554 44677777777777666664

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.03  E-value=0.12  Score=54.48  Aligned_cols=227  Identities=8%  Similarity=-0.005  Sum_probs=122.6

Q ss_pred             ccceEEeecCCCceEEEecCCcceEEEeeeccC--CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         482 KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRT--GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~--~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      +..|+..++..............+..+++.+..  +.++++-...+.|+..++..+.....+ ......+..|++.+.+.
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~  199 (408)
T 4a11_B          121 DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYD  199 (408)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE-CCCCSCEEEEEECSSCT
T ss_pred             CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee-cCCCCcEEEEEECCCCC
Confidence            455666677665555444444556677776543  335666667788888888755444333 33345677899988777


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEE-EE---------------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKV-LV---------------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~-l~---------------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      .|+++-...+.|.+.++....... .+               ......+..+++.|...+|+....  .+.|...++...
T Consensus       200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~  277 (408)
T 4a11_B          200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT--DNRMRLWNSSNG  277 (408)
T ss_dssp             TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTC
T ss_pred             cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC--CCeEEEEECCCC
Confidence            777777777889998885433111 11               123345678999987666666553  356666666543


Q ss_pred             ceEEEEEcC----CCCceeEEEecC-CCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCC
Q psy8875         624 HRNMVIVSD----IKWPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQ  697 (734)
Q Consensus       624 ~~~~lv~~~----l~~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~  697 (734)
                      .........    ...+..+.+... ...+.++ ...+.|...++........+..  ......+|++. .+.++++-..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~  354 (408)
T 4a11_B          278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKG--HYKTVDCCVFQSNFQELYSGSR  354 (408)
T ss_dssp             CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE-EETTEEEEEETTTCCEEEEECC--CSSCEEEEEEETTTTEEEEEET
T ss_pred             ccceeccccccccccccceeEEecCCCceEEEE-ecCCEEEEEECcCCcceeeecc--CCCeEEEEEEcCCCCEEEEECC
Confidence            322111110    011111222111 2223323 2346777777665544444432  23344567774 3445555555


Q ss_pred             CCceEEEeccCCCceEE
Q psy8875         698 QKAIYKANKFTGDNLTA  714 (734)
Q Consensus       698 ~~~v~~~~~~~G~~~~~  714 (734)
                      .+.|...+..+++.+..
T Consensus       355 dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          355 DCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             TSCEEEEEECC------
T ss_pred             CCeEEEEeCCCCCccCC
Confidence            56777777666655443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.02  E-value=0.31  Score=50.02  Aligned_cols=207  Identities=8%  Similarity=-0.006  Sum_probs=113.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      ...+.+|++.+..+.++++-...+.|+..++.+....    ...+......+..+++.+.+ .+.++-...+.|.+.++.
T Consensus        17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~   95 (319)
T 3frx_A           17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVA   95 (319)
T ss_dssp             SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT
T ss_pred             cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECC
Confidence            3456778887766566677667777766665422211    11223334456678887554 444555557899999986


Q ss_pred             CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC-----CCeEEEEe
Q psy8875         578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV-----QRRLYWVD  652 (734)
Q Consensus       578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~-----~~~LYw~D  652 (734)
                      .......+.........++++|...+|+-...  .+.|...++.+.....+. ........+++.+.     .+.++++-
T Consensus        96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--D~~i~vwd~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~  172 (319)
T 3frx_A           96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSR--DKTIKVWTIKGQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISA  172 (319)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSCEEEEEET--TSCEEEEETTSCEEEEEC-CCSSCEEEEEECCC------CCEEEEE
T ss_pred             CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEE
Confidence            55444444455567889999986555554442  356666667665443332 23334456666443     22344555


Q ss_pred             CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         653 AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       653 ~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      ...+.|...++........+..  ......+|++. .+.++++-...+.|...+..+++.+..
T Consensus       173 ~~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~  233 (319)
T 3frx_A          173 GNDKMVKAWNLNQFQIEADFIG--HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYT  233 (319)
T ss_dssp             ETTSCEEEEETTTTEEEEEECC--CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             eCCCEEEEEECCcchhheeecC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            5567777777765443333321  12233456653 344444444445555555555544433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.99  E-value=0.14  Score=54.89  Aligned_cols=163  Identities=11%  Similarity=0.043  Sum_probs=90.2

Q ss_pred             CCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-CceEE-E------EcCCCCCceeEEEeCCCCeEEEEecCCCceEEE
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-TMRKV-L------VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIER  617 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~~~~-l------~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~  617 (734)
                      ...+..|++.+.+ +++++- ..+.|.+.++.. ..... +      +.........++++|....++.+-. ..+.|..
T Consensus       177 ~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~i  253 (447)
T 3dw8_B          177 TYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRL  253 (447)
T ss_dssp             SSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEE
T ss_pred             CcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEE
Confidence            3456788888654 444454 578999999883 22222 2      1233456789999987634444432 2456766


Q ss_pred             eccCCCce----EEEEEcCCC------------CceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCC
Q psy8875         618 AGMDGSHR----NMVIVSDIK------------WPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLS  679 (734)
Q Consensus       618 ~~ldG~~~----~~lv~~~l~------------~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~  679 (734)
                      .++.....    ...+.....            ....|++.+.+..|..+..  +.|...++.  +.....+.. ...+.
T Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~-~~~~~  330 (447)
T 3dw8_B          254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQV-HEYLR  330 (447)
T ss_dssp             EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEES-CGGGT
T ss_pred             EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeec-ccccc
Confidence            66654332    222322221            5678999876666665554  788888875  333333321 11111


Q ss_pred             C-------------CeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         680 H-------------PFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       680 ~-------------P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      .             .+.+++. .+.++++-...+.|+..+..+++.+.+
T Consensus       331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~  379 (447)
T 3dw8_B          331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL  379 (447)
T ss_dssp             TTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred             ccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence            1             2235663 333345555567777777766665543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=96.98  E-value=0.047  Score=56.66  Aligned_cols=162  Identities=7%  Similarity=0.006  Sum_probs=97.4

Q ss_pred             CcceEEEeeecc---CCeEEEEEeCCCcEEEEecCCCCceEEEEe-C---CCCCccceeeeccC---CcEEEEeCCCCeE
Q psy8875         502 TKSATAIDFVFR---TGMIFWSDISEKKIYKAPIDEGSERTVVIE-E---DKTIADGLAVDWIY---SHIYWTDAHKNTI  571 (734)
Q Consensus       502 ~~~~~~i~~d~~---~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~---~~~~p~glAvD~~~---~~lY~td~~~~~I  571 (734)
                      ...+.+|+|.+.   ...++++-...+.|...++..+.....+.. .   ....+..+++.+..   +.++++-...+.|
T Consensus        18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i   97 (366)
T 3k26_A           18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGII   97 (366)
T ss_dssp             CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEE
T ss_pred             CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEE
Confidence            346678888863   344444444455777777664433322221 1   12345677777653   3566666667899


Q ss_pred             EEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE---EcCCCCceeEEEecCCCeE
Q psy8875         572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI---VSDIKWPNGLTLDLVQRRL  648 (734)
Q Consensus       572 ~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv---~~~l~~P~glavD~~~~~L  648 (734)
                      .+.++........+.........|++.|..+.++++-. ..+.|...++........+   .........|++++.+..|
T Consensus        98 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  176 (366)
T 3k26_A           98 RIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVS-KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKI  176 (366)
T ss_dssp             EEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEE-TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEE
T ss_pred             EEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEe-CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEE
Confidence            99998755544444456677899999984555555442 2467777777654443333   2334557788998766666


Q ss_pred             EEEeCCCCeEEEEecCC
Q psy8875         649 YWVDAKLNEISSCDYNG  665 (734)
Q Consensus       649 Yw~D~~~~~I~~~~~dG  665 (734)
                      +.+. ..+.|...++..
T Consensus       177 ~~~~-~dg~i~i~d~~~  192 (366)
T 3k26_A          177 MSCG-MDHSLKLWRINS  192 (366)
T ss_dssp             EEEE-TTSCEEEEESCS
T ss_pred             EEec-CCCCEEEEECCC
Confidence            5554 456788877664

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.98  E-value=0.067  Score=51.88  Aligned_cols=178  Identities=13%  Similarity=0.033  Sum_probs=105.4

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCc-----e-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC-------Cc
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSE-----R-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG-------TM  580 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~-----~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG-------~~  580 (734)
                      +-+||.++..  +|+...+..+..     + +.+-..+......||+++ ++.||.+  ..+.+++.+...       ..
T Consensus         4 ~~~l~~v~~d--~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            4 ESMLRGVYQD--KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCEEEEETT--EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             ceEEEEEeCC--cEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCccccccc
Confidence            3456666542  666665554331     1 222223467888999998 8999999  457899988743       22


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEecc--CCCc-----eEEEEEcCCCCceeEEEecCCCeEEEEeC
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM--DGSH-----RNMVIVSDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l--dG~~-----~~~lv~~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      .+.|-......-.+|.+|+ +|.||.+.   .++|+|.+.  ++..     ..+|....-..-..|+++ .++.||-+. 
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~-~G~LYav~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~-p~G~Lyav~-  152 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDP-NGYLYAVS---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFH-PNGYLYAVH-  152 (236)
T ss_dssp             CEEEECSCGGGCSEEEECT-TSCEEEEE---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC-TTSCEEEEE-
T ss_pred             ccEecccccccceEEEECC-CCCEEEeC---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEEC-CCceEEEEe-
Confidence            3334333444467899996 79999994   378999876  3332     233433333444788888 688899888 


Q ss_pred             CCCeEEEEe-cCCC------ceEEEEcCCCCCCCCeE-EEE-ECCEEEEEeCCCCceEEEeccC
Q psy8875         654 KLNEISSCD-YNGG------NRRLVLYSPQTLSHPFS-IST-FEDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       654 ~~~~I~~~~-~dG~------~~~~i~~~~~~~~~P~g-l~v-~~~~lywtd~~~~~v~~~~~~~  708 (734)
                       .++|++-. ..+.      ...++...   .-+-+- |.+ .++.||+..  .++|++...-+
T Consensus       153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~---g~~~yr~l~f~~~G~l~~v~--~g~~Y~~~~p~  210 (236)
T 1tl2_A          153 -GQQFYKALPPVSNQDNWLARATKIGQG---GWDTFKFLFFSSVGTLFGVQ--GGKFYEDYPPS  210 (236)
T ss_dssp             -TTEEEEECCCSSTTCCHHHHCEEEESS---SGGGEEEEEECTTSCEEEEE--TTEEEEESCCC
T ss_pred             -CCcEEecCCCCCCCcccccccceeccC---CcceEEEEEECCCCcEEEEe--CCeEEecCCcc
Confidence             45576543 2222      12223211   111122 222 467788888  66788775443

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=96.97  E-value=0.0019  Score=72.45  Aligned_cols=29  Identities=24%  Similarity=0.174  Sum_probs=22.1

Q ss_pred             CCccccCCCCCccCCCccccccCCCCCCC
Q psy8875         199 PKISCACPEGLKLLPDLLMCAEAGSKPCR  227 (734)
Q Consensus       199 ~~~~C~C~~G~~~~~~~~~~~~~~~~~C~  227 (734)
                      ..++|.|+.||.|..|+.-+......+|.
T Consensus       277 ~~g~C~C~~G~~G~~Ce~C~~g~~~~p~~  305 (525)
T 4aqs_A          277 VHGHCMCRHNTKGLNCELCMDFYHDLPWR  305 (525)
T ss_dssp             CCCEECCCTTEESSSSCEECTTCCSSCCC
T ss_pred             cCccccCcCCCcCCCCcCCCCccCCCccC
Confidence            56789999999999998766555554554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=96.94  E-value=0.051  Score=63.50  Aligned_cols=80  Identities=10%  Similarity=0.018  Sum_probs=52.7

Q ss_pred             ceeEEEeCCCCeEE-EEe-cCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC------CCeEEEEec
Q psy8875         592 PRSLALNPIDGWMY-WSD-WGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK------LNEISSCDY  663 (734)
Q Consensus       592 P~~iavD~~~g~LY-wtd-~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~------~~~I~~~~~  663 (734)
                      +..+++.|....|+ |.. ......|+..+++|...+.|.........-+.+|  +++||++...      ...|+++++
T Consensus       321 ~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          321 PSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             CCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEEC
Confidence            45778888766665 553 3334789999999887766554433222223465  8899998654      358999999


Q ss_pred             CCCceEEEEc
Q psy8875         664 NGGNRRLVLY  673 (734)
Q Consensus       664 dG~~~~~i~~  673 (734)
                      +|...++.++
T Consensus       399 ~g~~~~~~lt  408 (740)
T 4a5s_A          399 IDYTKVTCLS  408 (740)
T ss_dssp             TEEEEEEESS
T ss_pred             CCCCcceeec
Confidence            9877654443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.91  E-value=0.41  Score=53.95  Aligned_cols=79  Identities=13%  Similarity=0.071  Sum_probs=49.7

Q ss_pred             eeEEEecCCCeEEEEeC------------------------------------CCCeEEEEecC-CCceEEEEcCCCCCC
Q psy8875         637 NGLTLDLVQRRLYWVDA------------------------------------KLNEISSCDYN-GGNRRLVLYSPQTLS  679 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~------------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~~~  679 (734)
                      .++++|+.+++||+...                                    ..+.|..+++. |+.+-.+.....  .
T Consensus       389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~--~  466 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA--A  466 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC--C
T ss_pred             CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC--c
Confidence            46899999999998742                                    23567777764 333322221111  1


Q ss_pred             CCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875         680 HPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       680 ~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      ....++..++.||+... .+.|+.++..+|+.+..+...
T Consensus       467 ~~~~~~t~gg~v~~g~~-dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          467 WGGTLYTKGGLVWYATL-DGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             CSBCEEETTTEEEEECT-TSEEEEEETTTCCEEEEEECS
T ss_pred             cceeEEECCCEEEEEcC-CCeEEEEECCCCCEEEEEeCC
Confidence            11224456788888654 578999999999988776543

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=96.89  E-value=0.00091  Score=76.32  Aligned_cols=109  Identities=21%  Similarity=0.514  Sum_probs=70.8

Q ss_pred             cccCCCcccCCCCCccccCC------CCCccCCCccccccCCCCCCCCCCceeeC---CCceecCcCCCCCCCCCCCCCC
Q psy8875         187 LCLPAPQINAHSPKISCACP------EGLKLLPDLLMCAEAGSKPCRNSTMFRCT---GGMCIPSTWVCDGQNDCPDGVD  257 (734)
Q Consensus       187 ~C~~~~~~~~~~~~~~C~C~------~G~~~~~~~~~~~~~~~~~C~~~~~~~C~---~g~Ci~~~~~Cdg~~dC~dg~d  257 (734)
                      .|.+.+.|..    .+|.|+      +||.|..|+....     .|...+...|.   +|+|+..  +|.    |..|+.
T Consensus       483 ~Cs~~G~C~~----G~C~C~~~~~~~~G~~G~~Ce~~~~-----~C~~~~~~~C~~~~~G~C~~g--~C~----C~~G~~  547 (687)
T 3k6s_B          483 ICSGLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTI-----NCERYNGQVCGGPGRGLCFCG--KCR----CHPGFE  547 (687)
T ss_dssp             GGGSSEEEET----TEEEECCCCSTTCCEESTTSCEESS-----CSCEETTEETSHHHHEEEETT--EEE----ECTTCC
T ss_pred             cCCCCCEEeC----CEEEcCCCCCCCCCccccccccccc-----cccCCCCcCcCCCCCCeEECC--EEE----cCCCCc
Confidence            4667776663    389999      9999998874332     33311223343   3566532  344    999999


Q ss_pred             CCCCC-----CCCCCC-ceecCCC-CeecCCcccCCCCCCCCCCCCCCCCC-CCCCCCceecCCCCcccc
Q psy8875         258 EKKCH-----ETCRSD-EFTCANG-NCIQRIWLCDGDDDCKDGSDEKSCQP-VKCTAGQFTCQNLTACIP  319 (734)
Q Consensus       258 e~~C~-----~~C~~~-~~~C~~g-~Ci~~~~~Cdg~~dC~dgsDe~~C~~-~~C~~~~~~C~~~~~Ci~  319 (734)
                      +..|+     ..|... ...|.++ +|+.  .+|    .|..|+.+..|+. ..|.   ..|.+++.|+.
T Consensus       548 G~~Cec~~~~~~C~~~~g~~Cs~~G~C~~--g~C----~C~~Gy~G~~Ce~c~~C~---~~C~~~g~Cv~  608 (687)
T 3k6s_B          548 GSACQCERTTEGCLNPRRVECSGRGRCRC--NVC----ECHSGYQLPLCQECPGCP---SPCGKYISCAE  608 (687)
T ss_dssp             STTSCSCCSSCTTBCTTCSBTSSSCCBCS--SCB----CCSTTCCTTTTCCCTTSC---CCCTTTHHHHT
T ss_pred             CCCCccCCCCCCCCCCCCCCCCCCCcCCC--CEE----ECCCCCcCCCCCCCCCCC---cccCCCCCCCc
Confidence            99996     356442 2357654 8876  456    8999999999985 3453   26777666663

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=96.89  E-value=0.41  Score=54.29  Aligned_cols=235  Identities=10%  Similarity=-0.020  Sum_probs=129.9

Q ss_pred             eeeeeeccceEEeecCC-CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCcccee
Q psy8875         476 SLLFARKHDIRKISLDH-HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~-~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glA  553 (734)
                      .|+++....|+..++.. .....+......+..++|.|... +..+-...+.|+..++..+... ...+......+..|+
T Consensus        32 ~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~  110 (611)
T 1nr0_A           32 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS  110 (611)
T ss_dssp             EEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEE
Confidence            44555555666666653 33334434455678899998554 4445456777887777533332 222332334577899


Q ss_pred             eeccCCcEEEEeCCC---CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         554 VDWIYSHIYWTDAHK---NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       554 vD~~~~~lY~td~~~---~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +++.++.|..+....   ++|...+. |..... +.........+++.|...+++.+-. ..+.|...++........+.
T Consensus       111 fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s-~D~~v~lwd~~~~~~~~~l~  187 (611)
T 1nr0_A          111 WDSESKRIAAVGEGRERFGHVFLFDT-GTSNGN-LTGQARAMNSVDFKPSRPFRIISGS-DDNTVAIFEGPPFKFKSTFG  187 (611)
T ss_dssp             ECTTSCEEEEEECCSSCSEEEEETTT-CCBCBC-CCCCSSCEEEEEECSSSSCEEEEEE-TTSCEEEEETTTBEEEEEEC
T ss_pred             ECCCCCEEEEEECCCCceeEEEEeeC-CCCcce-ecCCCCCceEEEECCCCCeEEEEEe-CCCeEEEEECCCCeEeeeec
Confidence            998877777665442   34555553 222222 2244456789999987665555542 23455554443322222333


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC-----CCCCCCeEEEEE-CCEEEEEeCCCCceEEE
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP-----QTLSHPFSISTF-EDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~-----~~~~~P~gl~v~-~~~lywtd~~~~~v~~~  704 (734)
                      ......+.+++.+.+. ++.+-...+.|...++........+...     .......+|++. .+.++.+-...+.|...
T Consensus       188 ~H~~~V~~v~fspdg~-~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lW  266 (611)
T 1nr0_A          188 EHTKFVHSVRYNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW  266 (611)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccCceEEEEECCCCC-EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            3445678899986544 4455555677888775433332222110     122335677774 44555555555677777


Q ss_pred             eccCCCceEEE
Q psy8875         705 NKFTGDNLTAI  715 (734)
Q Consensus       705 ~~~~G~~~~~l  715 (734)
                      +..+++.+..+
T Consensus       267 d~~~~~~~~~~  277 (611)
T 1nr0_A          267 NVATLKVEKTI  277 (611)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eCCCCceeeee
Confidence            76667655544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.89  E-value=0.67  Score=49.98  Aligned_cols=221  Identities=10%  Similarity=0.032  Sum_probs=122.9

Q ss_pred             ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCC
Q psy8875         482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYS  559 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~  559 (734)
                      +..|+..++........+ .....+.+++|.+..  ++++-...+.|...++..+.... .+......+..|++.+ ..+
T Consensus       141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~  217 (464)
T 3v7d_B          141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTH-VFEGHNSTVRCLDIVEYKNI  217 (464)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEEEESSSC
T ss_pred             CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEE-EECCCCCccEEEEEecCCCC
Confidence            455666666554433333 345577888887533  55566678889888887554332 3333344566777765 244


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceE-----------------------EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRK-----------------------VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIE  616 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~-----------------------~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~  616 (734)
                      .++++-...+.|.+.++......                       ............+  .+...+|+...  ..+.|.
T Consensus       218 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~--~d~~i~  293 (464)
T 3v7d_B          218 KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGS--YDNTLI  293 (464)
T ss_dssp             EEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEE--TTSCEE
T ss_pred             CEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEe--CCCeEE
Confidence            66666666788888887654321                       1111222233333  33344555554  235677


Q ss_pred             EeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875         617 RAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       617 ~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~  696 (734)
                      ..++........+.........+++++.+..|+.+. ..+.|...++........+..  .......|++.+++|+.+. 
T Consensus       294 vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~-~dg~i~vwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~s~s-  369 (464)
T 3v7d_B          294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQG--HTALVGLLRLSDKFLVSAA-  369 (464)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTTEEEEEECC--CSSCEEEEEECSSEEEEEE-
T ss_pred             EEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCcEEEEEeC--CCCcEEEEEEcCCEEEEEe-
Confidence            777654433333333445567889987666665544 557888888765443333322  2233445666655544444 


Q ss_pred             CCCceEEEeccCCCceE
Q psy8875         697 QQKAIYKANKFTGDNLT  713 (734)
Q Consensus       697 ~~~~v~~~~~~~G~~~~  713 (734)
                      ..+.|...+..++....
T Consensus       370 ~dg~v~vwd~~~~~~~~  386 (464)
T 3v7d_B          370 ADGSIRGWDANDYSRKF  386 (464)
T ss_dssp             TTSEEEEEETTTCCEEE
T ss_pred             CCCcEEEEECCCCceee
Confidence            34666666666555433

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.82  E-value=0.27  Score=52.64  Aligned_cols=211  Identities=9%  Similarity=0.003  Sum_probs=116.3

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecC---CCCceEEEEeCCCCCccceeeec---------------cCCcEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPID---EGSERTVVIEEDKTIADGLAVDW---------------IYSHIY  562 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~---~g~~~~~~~~~~~~~p~glAvD~---------------~~~~lY  562 (734)
                      ....+.+|+|.+.... +++-...+.|...++.   .+........   .....+++.+               ..+.++
T Consensus       110 h~~~v~~~~~~~~~~~-l~s~s~dg~i~vwd~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          110 CSSTVTQITMIPNFDA-FAVSSKDGQIIVLKVNHYQQESEVKFLNC---ECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             CSSCEEEEEECTTSSE-EEEEETTSEEEEEEEEEEEETTEEEEEEE---EEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             CCCCEEEEEEeCCCCE-EEEEeCCCEEEEEEeccccCCceeecccc---ceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            3456788999875444 4454556777666552   2222211110   0111222211               125556


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEEcC--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeE
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGL  639 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~gl  639 (734)
                      ++-...+.|.+.++........+..  ....+..|+++|...+|+....  .+.|...++........+. ..-.....|
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~  263 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSFGDHAPITHV  263 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBCTTCEEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEecCCCCceEEE
Confidence            6666678999999865544433333  3467899999987656665543  3566666665432221111 112223455


Q ss_pred             EEecC---CCeEEEEeCCCCeEEEEecCCCc-eEEEEcCCC-----------------------CCCCCeEEEEECCEEE
Q psy8875         640 TLDLV---QRRLYWVDAKLNEISSCDYNGGN-RRLVLYSPQ-----------------------TLSHPFSISTFEDWLY  692 (734)
Q Consensus       640 avD~~---~~~LYw~D~~~~~I~~~~~dG~~-~~~i~~~~~-----------------------~~~~P~gl~v~~~~ly  692 (734)
                      ++.+.   .+.+.++-...+.|...++.... ...+.....                       .......|++..+.++
T Consensus       264 ~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l  343 (437)
T 3gre_A          264 EVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKIL  343 (437)
T ss_dssp             EECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEE
T ss_pred             EeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEE
Confidence            54432   34455565666778888876443 333331100                       1111345677777777


Q ss_pred             EEeCCCCceEEEeccCCCceEEEec
Q psy8875         693 WSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       693 wtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ++-...+.|...+..+++....+..
T Consensus       344 ~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          344 LTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             EEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             EecCCCCeEEEEECCCcccceEEec
Confidence            8877778888888888887776653

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.80  E-value=0.16  Score=58.79  Aligned_cols=184  Identities=11%  Similarity=0.094  Sum_probs=108.8

Q ss_pred             eEEeecCCCc--eEEEecCCc----ceEEEeeeccCCeEEEEEeC---CCcEEEEecCCCCc-eEEEEeCCCCCccceee
Q psy8875         485 IRKISLDHHE--MTAIVNSTK----SATAIDFVFRTGMIFWSDIS---EKKIYKAPIDEGSE-RTVVIEEDKTIADGLAV  554 (734)
Q Consensus       485 I~~i~l~~~~--~~~l~~~~~----~~~~i~~d~~~~~lyw~d~~---~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAv  554 (734)
                      |++..+....  -..+.....    ...++.+.+..+.|+++...   ...|+.++++++.. ...+.. ....... .+
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~~-~~  287 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADVS-LV  287 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCEE-EE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceEE-EE
Confidence            6666554332  233333222    35678888888888776543   24789888875532 233332 2222222 25


Q ss_pred             eccCCcEEEEeCC---CCeEEEEeCCCCce---EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEE
Q psy8875         555 DWIYSHIYWTDAH---KNTIELANFEGTMR---KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNM  627 (734)
Q Consensus       555 D~~~~~lY~td~~---~~~I~~~~ldG~~~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~  627 (734)
                      ++.++.||+....   +.+|.++++++...   +.++.......   .+.+..++|+++... ...+|++.+++|...+.
T Consensus       288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~  364 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE  364 (693)
T ss_dssp             EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence            5667888877543   47899999987543   55554333222   555567788777532 23589999999876554


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEeC---CCCeEEEEecCCCceEEEEc
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVDA---KLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~i~~  673 (734)
                      +.........+++.++.++.|+++-.   .-..|+.+++.+...+++..
T Consensus       365 l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          365 VALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             ECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred             eecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence            43222222345555656777777643   23689999998777666654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.79  E-value=0.39  Score=50.69  Aligned_cols=228  Identities=10%  Similarity=0.006  Sum_probs=127.8

Q ss_pred             ceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeec
Q psy8875         484 DIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       484 ~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~  556 (734)
                      .|+.-++..... ..+......+..++|.+....| .+-...+.|...++.....      ...++......+..+++.+
T Consensus        89 ~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~  167 (380)
T 3iz6_a           89 RLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSV-ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVP  167 (380)
T ss_dssp             EEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEE-EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCS
T ss_pred             eEEEEECCCCccceEEecCCCCEEEEEECCCCCEE-EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEec
Confidence            344444443332 2232334456677888755444 4444456666665542211      0111111223345566655


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEc-----CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEEEE
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVR-----SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMVI  629 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-----~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~lv  629 (734)
                      ..+..+++-...+.|.+.++........+.     ........+++.+..+.++.+-.. .+.|...++.  +.... .+
T Consensus       168 ~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~-D~~v~~wd~~~~~~~~~-~~  245 (380)
T 3iz6_a          168 DQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSC-DTTVRLWDLRITSRAVR-TY  245 (380)
T ss_dssp             SSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEET-TSCEEEEETTTTCCCCE-EE
T ss_pred             CCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEEC-CCeEEEEECCCCCcceE-EE
Confidence            556666677778899999987655544442     233456788888877777777633 4566666654  22222 23


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-----CCCCCeEEEE-ECCEEEEEeCCCCceEE
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-----TLSHPFSIST-FEDWLYWSDWQQKAIYK  703 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-----~~~~P~gl~v-~~~~lywtd~~~~~v~~  703 (734)
                      .......+.|++.+.+ .++++-+..+.|...++.......++....     ......++++ ..+.++++-...+.|+.
T Consensus       246 ~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~v  324 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYV  324 (380)
T ss_dssp             CCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEE
T ss_pred             CCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEE
Confidence            3334456789997654 455566667788888877654444433211     1112356777 34566666666778888


Q ss_pred             EeccCCCceEEE
Q psy8875         704 ANKFTGDNLTAI  715 (734)
Q Consensus       704 ~~~~~G~~~~~l  715 (734)
                      .+..+++.+..+
T Consensus       325 wd~~~~~~~~~~  336 (380)
T 3iz6_a          325 WDTLLAEMVLNL  336 (380)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCceEEEE
Confidence            777777665554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.78  E-value=0.63  Score=48.83  Aligned_cols=187  Identities=13%  Similarity=0.100  Sum_probs=102.0

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-C---CCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceEEEEcCC
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEED-K---TIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRKVLVRSY  588 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-~---~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~~l~~~~  588 (734)
                      .+.||+. ...+.|+.+++..|.......... .   ......+++  .+.||+.. ..+.|...++. |+.+-......
T Consensus       143 ~~~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~  218 (376)
T 3q7m_A          143 DGLVLIH-TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQ  218 (376)
T ss_dssp             TTEEEEE-CTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECCC
T ss_pred             CCEEEEE-cCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEeccc
Confidence            4566654 345677777776454322221100 0   011234444  46666653 35678888764 44332222110


Q ss_pred             C---------C-CceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         589 L---------D-EPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       589 l---------~-~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      .         . .....+++  .+.||+...  .+.|...++. |..+   ....+..+.+++++  +++||++.. .+.
T Consensus       219 ~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~--~g~l~~~d~~tG~~~---w~~~~~~~~~~~~~--~~~l~~~~~-~g~  288 (376)
T 3q7m_A          219 ATGSTEIDRLSDVDTTPVVV--NGVVFALAY--NGNLTALDLRSGQIM---WKRELGSVNDFIVD--GNRIYLVDQ-NDR  288 (376)
T ss_dssp             -----------CCCCCCEEE--TTEEEEECT--TSCEEEEETTTCCEE---EEECCCCEEEEEEE--TTEEEEEET-TCC
T ss_pred             CCCCcccccccccCCCcEEE--CCEEEEEec--CcEEEEEECCCCcEE---eeccCCCCCCceEE--CCEEEEEcC-CCe
Confidence            0         0 00122232  578888763  4678887774 4322   22334445667775  889999975 467


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |..++.......-.... .......++.+.+++||+.+.. +.|+.++..+|+.+....
T Consensus       289 l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~l~v~~~~-g~l~~~d~~tG~~~~~~~  345 (376)
T 3q7m_A          289 VMALTIDGGVTLWTQSD-LLHRLLTSPVLYNGNLVVGDSE-GYLHWINVEDGRFVAQQK  345 (376)
T ss_dssp             EEEEETTTCCEEEEECT-TTTSCCCCCEEETTEEEEECTT-SEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCcEEEeecc-cCCCcccCCEEECCEEEEEeCC-CeEEEEECCCCcEEEEEe
Confidence            99988754433322221 1112233456688999998864 679999998998776554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.78  E-value=0.095  Score=61.61  Aligned_cols=220  Identities=9%  Similarity=-0.024  Sum_probs=123.3

Q ss_pred             eeeeee-ccceEEeecCCCceEEEec----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCC
Q psy8875         476 SLLFAR-KHDIRKISLDHHEMTAIVN----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTI  548 (734)
Q Consensus       476 ~l~~~~-~~~I~~i~l~~~~~~~l~~----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~  548 (734)
                      .|++.. ...|.+++.....+..+..    ....+.+|..|. .+.||+. ...+.|++++...+.. +.+..  .....
T Consensus       375 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig-t~~~Gl~~~~~~~~~~-~~~~~~~~~~~~  451 (781)
T 3v9f_A          375 KLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWFG-TYLGNISYYNTRLKKF-QIIELEKNELLD  451 (781)
T ss_dssp             CEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEEE-ETTEEEEEECSSSCEE-EECCSTTTCCCC
T ss_pred             CEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEEE-eccCCEEEEcCCCCcE-EEeccCCCCCCe
Confidence            455544 4667777665433322211    123567777774 5666554 4446788887653322 11111  11234


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      +..|+.| ..++||++..  ..|.+.+..+...+.+....     ...+.+|+.|+ .|.|+++..+  ..|.+.+.++.
T Consensus       452 v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~--~Gl~~~~~~~~  525 (781)
T 3v9f_A          452 VRVFYED-KNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWIGTFG--GGVGIYTPDMQ  525 (781)
T ss_dssp             EEEEEEC-TTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEEEESS--SCEEEECTTCC
T ss_pred             EEEEEEC-CCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEEEEcC--CCEEEEeCCCC
Confidence            6678888 4577777765  56888887654443333221     24678899996 6778877642  45888777655


Q ss_pred             ceEEEEE-cCC--CCceeEEEecCCCeEEEEeCCCCeE-EEEecCCCceEEEEcCCCCC--CCCeEEEEE-CCEEEEEeC
Q psy8875         624 HRNMVIV-SDI--KWPNGLTLDLVQRRLYWVDAKLNEI-SSCDYNGGNRRLVLYSPQTL--SHPFSISTF-EDWLYWSDW  696 (734)
Q Consensus       624 ~~~~lv~-~~l--~~P~glavD~~~~~LYw~D~~~~~I-~~~~~dG~~~~~i~~~~~~~--~~P~gl~v~-~~~lywtd~  696 (734)
                      ..+.+.. ..+  ....+|+.| ..++|+++..  +.| .+++......+.+... ..+  ....+|..+ .+.||++. 
T Consensus       526 ~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi~T~--~Glv~~~d~~~~~~~~~~~~-~gl~~~~i~~i~~d~~g~lW~~t-  600 (781)
T 3v9f_A          526 LVRKFNQYEGFCSNTINQIYRS-SKGQMWLATG--EGLVCFPSARNFDYQVFQRK-EGLPNTHIRAISEDKNGNIWAST-  600 (781)
T ss_dssp             EEEEECTTTTCSCSCEEEEEEC-TTSCEEEEET--TEEEEESCTTTCCCEEECGG-GTCSCCCCCEEEECSSSCEEEEC-
T ss_pred             eEEEccCCCCCCCCeeEEEEEC-CCCCEEEEEC--CCceEEECCCCCcEEEcccc-CCCCCceEEEEEECCCCCEEEEc-
Confidence            4333221 112  234577777 5677877765  345 8877665544444322 112  234577775 57777775 


Q ss_pred             CCCceEEEeccCCC
Q psy8875         697 QQKAIYKANKFTGD  710 (734)
Q Consensus       697 ~~~~v~~~~~~~G~  710 (734)
                       .+.|.++++.+++
T Consensus       601 -~~Gl~~~~~~~~~  613 (781)
T 3v9f_A          601 -NTGISCYITSKKC  613 (781)
T ss_dssp             -SSCEEEEETTTTE
T ss_pred             -CCceEEEECCCCc
Confidence             3457777765443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.77  E-value=0.59  Score=47.61  Aligned_cols=208  Identities=8%  Similarity=-0.017  Sum_probs=114.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      ...+.+|+|.|..+.+..+-...+.|+.-++..+...    ...+..-...+..|++.+.+..|+ +-...+.|...+..
T Consensus        38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~-s~~~d~~i~~~~~~  116 (340)
T 4aow_A           38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL-SGSWDGTLRLWDLT  116 (340)
T ss_dssp             SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred             cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE-EEcccccceEEeec
Confidence            4567899999877777777777788877776643321    112222344567888886555454 44446788888887


Q ss_pred             CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-CCCCceeEEEecCCC-eEEEEeCCC
Q psy8875         578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-DIKWPNGLTLDLVQR-RLYWVDAKL  655 (734)
Q Consensus       578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-~l~~P~glavD~~~~-~LYw~D~~~  655 (734)
                      .................+...+...+|+....  .+.|...++.+.....+... .......+++.+... .++++-...
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~--d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR--DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             ccceeeeecCCCCceeEEEEeecCccceeecC--CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence            76665555555556667777766655555442  34555555555443332211 123344556654433 344454455


Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      +.|...++........+..  ......+|++. .+.++++-...+.|...+..+++.+..
T Consensus       195 ~~i~i~d~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~  252 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIG--HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT  252 (340)
T ss_dssp             SCEEEEETTTTEEEEEECC--CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCceeeEecC--CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence            6777777765544433322  12233456663 334444433445555555544444333

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.76  E-value=0.75  Score=49.33  Aligned_cols=213  Identities=11%  Similarity=0.025  Sum_probs=117.7

Q ss_pred             eccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCC
Q psy8875         481 RKHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYS  559 (734)
Q Consensus       481 ~~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~  559 (734)
                      .+..|+..++.......... ....+.+++++   +.+.++-...+.|...++..+.....+ ......+..|+++  . 
T Consensus       151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~--~-  223 (435)
T 1p22_A          151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFN--N-  223 (435)
T ss_dssp             SSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECC--T-
T ss_pred             CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEc--C-
Confidence            34556666665544433333 44567788874   445556667888988888755433332 2223334445543  3 


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceE---EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRK---VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~---~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      .++++-...+.|.+.++......   ..+.........++++  ..+|+...  ..+.|...++........+.......
T Consensus       224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~v  299 (435)
T 1p22_A          224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--GDRTIKVWNTSTCEFVRTLNGHKRGI  299 (435)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe--CCCeEEEEECCcCcEEEEEcCCCCcE
Confidence            45556566788999988654332   2333444556677774  34555554  24677777776544433344334445


Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCC
Q psy8875         637 NGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      ..++++  ++. +++-...+.|...++........+..  ......+|++.+.+|+... ..+.|...+..++.
T Consensus       300 ~~~~~~--~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~l~sg~-~dg~i~vwd~~~~~  367 (435)
T 1p22_A          300 ACLQYR--DRL-VVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRFDNKRIVSGA-YDGKIKVWDLVAAL  367 (435)
T ss_dssp             EEEEEE--TTE-EEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEECCSSEEEEEE-TTSCEEEEEHHHHT
T ss_pred             EEEEeC--CCE-EEEEeCCCeEEEEECCCCCEEEEEeC--CcCcEEEEEecCCEEEEEe-CCCcEEEEECCCCC
Confidence            566664  444 44444567888888775444333332  2233455666545444444 44666666654443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.75  E-value=0.82  Score=49.09  Aligned_cols=219  Identities=11%  Similarity=0.066  Sum_probs=120.4

Q ss_pred             ccceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++........+ .....+.+++++  .+. +++-...+.|...++..+..... +......+..++++   +.
T Consensus       178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~~---~~  250 (445)
T 2ovr_B          178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHV-LMGHVAAVRCVQYD---GR  250 (445)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEE-EECCSSCEEEEEEC---SS
T ss_pred             CCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEE-EcCCcccEEEEEEC---CC
Confidence            345666666544433322 234456777776  344 45555678888888875543333 33333445556653   44


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT  640 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla  640 (734)
                      ++++-...+.|.+.++........+.........++++  ..+|+...  ..+.|...++........+.........++
T Consensus       251 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~  326 (445)
T 2ovr_B          251 RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGME  326 (445)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--CCEEEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence            45555556889998886554443443444456677763  34455444  246677777654433333333333445566


Q ss_pred             EecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-CCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         641 LDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-TLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       641 vD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++  ++.|+ +-...+.|...++........+.... ......+|++.+++|+.+ ...+.|...+..+|+.+..+
T Consensus       327 ~~--~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~-~~dg~v~iwd~~~~~~~~~~  398 (445)
T 2ovr_B          327 LK--DNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKLWDLKTGEFIRNL  398 (445)
T ss_dssp             EE--TTEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEE-ETTSEEEEEETTTCCEEEEE
T ss_pred             Ee--CCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEE-eCCCeEEEEECCCCceeeee
Confidence            54  45444 44456788888875444333333211 222334566655544444 44577777787778776665

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.75  E-value=0.47  Score=54.71  Aligned_cols=60  Identities=8%  Similarity=-0.007  Sum_probs=35.3

Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      +.|..+++......--+.... ...--.++..++.||+. ...+.|+.++..+|+.+..+..
T Consensus       457 g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeC
Confidence            567777765433222221110 01112245567888887 4568899999999998877753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.75  E-value=0.32  Score=56.00  Aligned_cols=208  Identities=10%  Similarity=0.033  Sum_probs=125.7

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN  575 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~  575 (734)
                      .....+.+|++.+....++.+-...+.|+..++..+..    ....+......+..|++.+.+ ++..+-...+.|.+.+
T Consensus       380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd  458 (694)
T 3dm0_A          380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWD  458 (694)
T ss_dssp             CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred             cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEE
Confidence            34556788999877777888877888888877764321    112233334556788888654 4555555678999999


Q ss_pred             CCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---CCCCceeEEEecCC-CeEEEE
Q psy8875         576 FEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---DIKWPNGLTLDLVQ-RRLYWV  651 (734)
Q Consensus       576 ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~l~~P~glavD~~~-~~LYw~  651 (734)
                      +........+.........|++.|...+|.-...  .+.|...++.+.....+...   .......+++.+.. ..++++
T Consensus       459 ~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~--D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  536 (694)
T 3dm0_A          459 LAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR--DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS  536 (694)
T ss_dssp             TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET--TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred             CCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC--CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence            8765544444455667889999987666655542  35666666655444333221   12234677776544 234555


Q ss_pred             eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCce
Q psy8875         652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      -...+.|...++........+..  ......+|++. .+.++++-...+.|...+..+++.+
T Consensus       537 ~s~d~~v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          537 ASWDKTVKVWNLSNCKLRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            55567888888876655444432  23344567773 3455555555566666666555443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=96.74  E-value=0.05  Score=63.08  Aligned_cols=183  Identities=12%  Similarity=0.073  Sum_probs=105.3

Q ss_pred             cceEEeecCCCceE-E-EecCCcceEEEeeeccCCeEEEEEeCC------------CcEEEEecCCCCce-EEEEeCC--
Q psy8875         483 HDIRKISLDHHEMT-A-IVNSTKSATAIDFVFRTGMIFWSDISE------------KKIYKAPIDEGSER-TVVIEED--  545 (734)
Q Consensus       483 ~~I~~i~l~~~~~~-~-l~~~~~~~~~i~~d~~~~~lyw~d~~~------------~~I~~~~l~~g~~~-~~~~~~~--  545 (734)
                      ..|+.+++.+.... . .+... ...+++|.+....||++....            ..|++.++.++... ..+....  
T Consensus       147 ~~i~v~dl~tg~~~~~~~~~~~-~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~  225 (695)
T 2bkl_A          147 AVLHVIDVDSGEWSKVDVIEGG-KYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD  225 (695)
T ss_dssp             CEEEEEETTTCCBCSSCCBSCC-TTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred             EEEEEEECCCCCCcCCcccCcc-cccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence            45888888766543 1 11111 115788988888888886532            34899888755432 3333211  


Q ss_pred             CCCccceeeeccCCcEEEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEe-cC-CCceEEEecc
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSD-WG-QNAKIERAGM  620 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd-~~-~~~~I~~~~l  620 (734)
                      .....++++.+.++.|+++...   ...|++.+..+...+.|.... ......+. +..+ ||++. +. ...+|+++++
T Consensus       226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~  302 (695)
T 2bkl_A          226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV-GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP  302 (695)
T ss_dssp             TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS-SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred             CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC-CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence            1233477888878888776543   347777776544444444322 22233332 4444 66653 32 3579999999


Q ss_pred             CCCce---EEEEEcC-CCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEE
Q psy8875         621 DGSHR---NMVIVSD-IKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLV  671 (734)
Q Consensus       621 dG~~~---~~lv~~~-l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i  671 (734)
                      ++...   +.++... -....++++.  +++|+++-.  ...+|+.++++|...+.+
T Consensus       303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l  357 (695)
T 2bkl_A          303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDATSEVRVATLKGKPVRTV  357 (695)
T ss_dssp             TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred             CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence            76542   4555332 2224566665  778887753  345788888877755443

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=96.74  E-value=0.00069  Score=80.92  Aligned_cols=34  Identities=44%  Similarity=1.076  Sum_probs=32.2

Q ss_pred             CceecCCCceecCcCccCCCCCCCCCCccccccc
Q psy8875          58 TMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQK   91 (734)
Q Consensus        58 ~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~~   91 (734)
                      .+|+|.+|+||+..|+|||.+||.|+|||.+|..
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~  154 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGR  154 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSS
T ss_pred             cccccCCCceEccceecCCcccCCCccccccCCC
Confidence            6799999999999999999999999999999974

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=96.73  E-value=0.00087  Score=46.03  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=26.7

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ++++|..++......|+++.++|+|.|++||    .++.|+
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~----~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGF----EGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTC----CSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCC----cCCccC
Confidence            4567765443334579999999999999999    456663

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.72  E-value=0.51  Score=48.81  Aligned_cols=177  Identities=11%  Similarity=0.037  Sum_probs=103.4

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+..++|.+ .+. +++-...+.|...++..+.... .+......+..|++.+. +.++++-...+.|.+.++.....
T Consensus       143 ~~~v~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~  218 (340)
T 1got_B          143 TGYLSCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTT-TFTGHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGMC  218 (340)
T ss_dssp             SSCEEEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCSE
T ss_pred             CccEEEEEECC-CCc-EEEEECCCcEEEEECCCCcEEE-EEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCee
Confidence            34556677764 344 4455567788888887543332 23323445678888864 55666666678999999866554


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC-CCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD-IKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~-l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      ...+........+|++.|...+|....  ..+.|...++........+. .. ......|++.+.+..|. +-...+.|.
T Consensus       219 ~~~~~~h~~~v~~v~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~d~~i~  295 (340)
T 1got_B          219 RQTFTGHESDINAICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL-AGYDDFNCN  295 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE-EEETTSEEE
T ss_pred             EEEEcCCcCCEEEEEEcCCCCEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE-EECCCCeEE
Confidence            444545556788999998655555443  34667666665433222221 11 12356788876555554 444567888


Q ss_pred             EEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875         660 SCDYNGGNRRLVLYSPQTLSHPFSISTF  687 (734)
Q Consensus       660 ~~~~dG~~~~~i~~~~~~~~~P~gl~v~  687 (734)
                      ..++........+..  .......|++.
T Consensus       296 vwd~~~~~~~~~~~~--h~~~v~~~~~s  321 (340)
T 1got_B          296 VWDALKADRAGVLAG--HDNRVSCLGVT  321 (340)
T ss_dssp             EEETTTCCEEEEEEC--CSSCEEEEEEC
T ss_pred             EEEcccCcEeeEeec--CCCcEEEEEEc
Confidence            888665544433332  12334556663

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=96.68  E-value=0.091  Score=54.01  Aligned_cols=177  Identities=11%  Similarity=0.023  Sum_probs=102.6

Q ss_pred             ccceEEeec-CCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---------CCceEEEEeCCCCCc
Q psy8875         482 KHDIRKISL-DHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---------GSERTVVIEEDKTIA  549 (734)
Q Consensus       482 ~~~I~~i~l-~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---------g~~~~~~~~~~~~~p  549 (734)
                      ...|+..++ .......+..  ....+.+|+|.+  +.++++-...+.|+..++..         +..... +. ....+
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~-~~~~v  153 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNN-TK-VKNKI  153 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSS-SS-SCCCE
T ss_pred             CCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeE-Ee-eCCce
Confidence            456777777 6666655554  556778999998  44555555677888777653         111111 11 12345


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCC-Cc--eEEEEcCCCCCceeEEEeC-CCCeEEEEecCCCceEEEeccCCC--
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEG-TM--RKVLVRSYLDEPRSLALNP-IDGWMYWSDWGQNAKIERAGMDGS--  623 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG-~~--~~~l~~~~l~~P~~iavD~-~~g~LYwtd~~~~~~I~~~~ldG~--  623 (734)
                      ..|++.+  ..|+.+ ...+.|.+.++.. ..  ...........+..|++.| ...+|+....  .+.|...+++..  
T Consensus       154 ~~~~~~~--~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~--dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          154 FTMDTNS--SRLIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVEFFDDQGD  228 (342)
T ss_dssp             EEEEECS--SEEEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEEECCTTCC
T ss_pred             EEEEecC--CcEEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec--CCcEEEEEEcCCCc
Confidence            5666653  334444 4467899999876 22  2333334455788999988 6555555542  355555444432  


Q ss_pred             ----ceEEEEEcCC---------CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce
Q psy8875         624 ----HRNMVIVSDI---------KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR  668 (734)
Q Consensus       624 ----~~~~lv~~~l---------~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~  668 (734)
                          .....+....         .....|++.+.+.+|+.+. ..+.|...++.....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vwd~~~~~~  285 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKK  285 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEE
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec-CCceEEEEcCccHhH
Confidence                2222232221         2567889987666665554 557888888765443

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.66  E-value=0.00085  Score=63.20  Aligned_cols=52  Identities=37%  Similarity=0.830  Sum_probs=41.7

Q ss_pred             CCcEecCCCCccccccCcCCCC----CcccceeccCCceEEecCCCeeeCCCCCcccccc
Q psy8875         416 EGYKLSSNRHTCIDIDECETPG----SCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA  471 (734)
Q Consensus       416 ~G~~l~~~~~~C~~~~eC~~~~----~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~  471 (734)
                      .||++.   ..+.+++||..+.    .|++.|+|+.|+|.|.|++||.+..++++ |++.
T Consensus       113 ~Gf~~~---~~~~di~eC~~~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~d~~~-C~~~  168 (170)
T 1szb_A          113 TGFEAF---YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT-CSEQ  168 (170)
T ss_dssp             CEEEEE---EEEEECCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSC-EEEC
T ss_pred             cCceee---eeccccCcccCCCCCCCccCCccccCCCCEEEeCCCCcEECCCCCc-cccc
Confidence            567653   3567899998643    29999999999999999999999888766 8653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=96.65  E-value=0.74  Score=47.12  Aligned_cols=217  Identities=11%  Similarity=0.015  Sum_probs=121.5

Q ss_pred             ccceEEeecCCCc-eEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc---
Q psy8875         482 KHDIRKISLDHHE-MTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI---  557 (734)
Q Consensus       482 ~~~I~~i~l~~~~-~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~---  557 (734)
                      +..|+..++.... ...+......+.+|++++.. .++++-...+.|...++. +.....+ ......+..+++.+.   
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~-~~~~~~~-~~h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIK-GQCLATL-LGHNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETT-SCEEEEE-CCCSSCEEEEEECCC---
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECC-CCeEEEE-eccCCcEEEEEEccCCCC
Confidence            3456666665443 33344445677889998754 455565667888888876 3322222 222334455666543   


Q ss_pred             --CCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC
Q psy8875         558 --YSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW  635 (734)
Q Consensus       558 --~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~  635 (734)
                        .+.++++-...+.|.+.++........+.........+++.|...+|.-..  ..+.|...++........+. .-..
T Consensus       163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~-~~~~  239 (319)
T 3frx_A          163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEIMLWNLAAKKAMYTLS-AQDE  239 (319)
T ss_dssp             ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEE-CCSC
T ss_pred             CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEec-CCCc
Confidence              233566666678899999876655444545566788999998655554443  34677777776544332332 2345


Q ss_pred             ceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC------CCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875         636 PNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ------TLSHPFSISTF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       636 P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~------~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~  706 (734)
                      ...|++.+.+..|..+..  ..|...+++.......+....      ......+|++. .+.++++-...+.|...+.
T Consensus       240 v~~~~~sp~~~~la~~~~--~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~  315 (319)
T 3frx_A          240 VFSLAFSPNRYWLAAATA--TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV  315 (319)
T ss_dssp             EEEEEECSSSSEEEEEET--TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEcC--CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence            678999877777766654  346666665543322222110      01223466663 3444444444455554443

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=96.64  E-value=0.00035  Score=53.19  Aligned_cols=44  Identities=25%  Similarity=0.619  Sum_probs=31.4

Q ss_pred             cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCcC
Q psy8875         388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECE  434 (734)
Q Consensus       388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~  434 (734)
                      ++++|..++..-.  ..|++++++|+|.|++||.+   +..|.+.++|.
T Consensus        10 ~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~---G~~C~~~~~C~   55 (61)
T 2k2s_B           10 TPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRI---SLDGTGNVTCI   55 (61)
T ss_dssp             SCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEE---EECSSSCEEEE
T ss_pred             CCCcCcCCCCcCCCccccccCCCceEeECCCCCcc---CCCCCCCCEec
Confidence            4677876553333  47999999999999999951   45676655553

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.64  E-value=0.85  Score=47.78  Aligned_cols=186  Identities=10%  Similarity=0.069  Sum_probs=101.7

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCceEEEEcCC-C--
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMRKVLVRSY-L--  589 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~~~l~~~~-l--  589 (734)
                      .+.||+.. ..+.|+.+++..|...-. ...........+++  .+.||+... .+.|...+. +|+.+-...... .  
T Consensus       103 ~~~v~v~~-~~g~l~a~d~~tG~~~W~-~~~~~~~~~~p~~~--~~~v~v~~~-~g~l~~~d~~tG~~~W~~~~~~~~~~  177 (376)
T 3q7m_A          103 GGHVYIGS-EKAQVYALNTSDGTVAWQ-TKVAGEALSRPVVS--DGLVLIHTS-NGQLQALNEADGAVKWTVNLDMPSLS  177 (376)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTCCEEEE-EECSSCCCSCCEEE--TTEEEEECT-TSEEEEEETTTCCEEEEEECCC----
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEEEE-EeCCCceEcCCEEE--CCEEEEEcC-CCeEEEEECCCCcEEEEEeCCCCcee
Confidence            67888765 457788888875554322 22111112223343  566776543 567888886 455433322111 0  


Q ss_pred             -CCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCceEEEEEcC---------C-CCceeEEEecCCCeEEEEeCCCCe
Q psy8875         590 -DEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSHRNMVIVSD---------I-KWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       590 -~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~~~~lv~~~---------l-~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                       ......+++  .+.||+...  .+.|...++ +|..+...-...         + ......++  .+++||+.. ..+.
T Consensus       178 ~~~~~~~~~~--~~~v~~g~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~-~~g~  250 (376)
T 3q7m_A          178 LRGESAPTTA--FGAAVVGGD--NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALA-YNGN  250 (376)
T ss_dssp             -CCCCCCEEE--TTEEEECCT--TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEEC-TTSC
T ss_pred             ecCCCCcEEE--CCEEEEEcC--CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEe-cCcE
Confidence             011233443  567777642  356777776 344332221110         0 00112233  368888875 3568


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |..++.......-...    ...+.++++.+++||++... +.|+.++..+|+.+....
T Consensus       251 l~~~d~~tG~~~w~~~----~~~~~~~~~~~~~l~~~~~~-g~l~~~d~~tG~~~w~~~  304 (376)
T 3q7m_A          251 LTALDLRSGQIMWKRE----LGSVNDFIVDGNRIYLVDQN-DRVMALTIDGGVTLWTQS  304 (376)
T ss_dssp             EEEEETTTCCEEEEEC----CCCEEEEEEETTEEEEEETT-CCEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCcEEeecc----CCCCCCceEECCEEEEEcCC-CeEEEEECCCCcEEEeec
Confidence            8888875333322221    33456788899999999864 679999998998765543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.62  E-value=0.012  Score=65.11  Aligned_cols=106  Identities=23%  Similarity=0.293  Sum_probs=76.0

Q ss_pred             CCCCceeEEEeCCCCeEEEEecCC--------------------CceEEEeccCCCc-------eEEEEE----------
Q psy8875         588 YLDEPRSLALNPIDGWMYWSDWGQ--------------------NAKIERAGMDGSH-------RNMVIV----------  630 (734)
Q Consensus       588 ~l~~P~~iavD~~~g~LYwtd~~~--------------------~~~I~~~~ldG~~-------~~~lv~----------  630 (734)
                      .+..|.+|+++|.+|.||++-.+.                    .++|++...++..       -.+++.          
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            457899999999999999995421                    2679998875532       122332          


Q ss_pred             -----------cCCCCceeEEEecCCCeEEE-EeCC-----------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-
Q psy8875         631 -----------SDIKWPNGLTLDLVQRRLYW-VDAK-----------LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-  686 (734)
Q Consensus       631 -----------~~l~~P~glavD~~~~~LYw-~D~~-----------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-  686 (734)
                                 ..+..|++|++| ..+.||+ +|..           .+.|++++.+....+.++.. .....|.||++ 
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd-~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~-P~~aEpnGiafS  539 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFD-KAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFS  539 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEEC-TTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEEC
T ss_pred             cccCccCccccCccCCCCceEEC-CCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeC-CCCccccCCEEC
Confidence                       136789999999 4688999 7863           34799998866666666643 23457899999 


Q ss_pred             -ECCEEEEEe
Q psy8875         687 -FEDWLYWSD  695 (734)
Q Consensus       687 -~~~~lywtd  695 (734)
                       ++..||++-
T Consensus       540 PD~ktLfV~v  549 (592)
T 4a9v_A          540 PDQKTLFVGI  549 (592)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence             466899875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.62  E-value=0.0061  Score=70.92  Aligned_cols=217  Identities=9%  Similarity=-0.024  Sum_probs=119.6

Q ss_pred             cceEEeecCCCce---EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-------------
Q psy8875         483 HDIRKISLDHHEM---TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-------------  546 (734)
Q Consensus       483 ~~I~~i~l~~~~~---~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-------------  546 (734)
                      ..|+..++++...   ..+.   ..+..++|.|..+.|.++.  .+.|+..++.++....+ ...+.             
T Consensus        90 ~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~  163 (719)
T 1z68_A           90 ATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVY  163 (719)
T ss_dssp             EEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHH
T ss_pred             eEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEE-ecCCCcCCeEccccccee
Confidence            5677777776654   3331   3456688888888888774  56788888875543322 11111             


Q ss_pred             -----CCccceeeeccCCcEEEEeCCC---------------------------------CeEEEEeCCCCceE---EEE
Q psy8875         547 -----TIADGLAVDWIYSHIYWTDAHK---------------------------------NTIELANFEGTMRK---VLV  585 (734)
Q Consensus       547 -----~~p~glAvD~~~~~lY~td~~~---------------------------------~~I~~~~ldG~~~~---~l~  585 (734)
                           ....++++.+.++.|+++....                                 ..|.+.++++....   .+.
T Consensus       164 ~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~  243 (719)
T 1z68_A          164 EEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVP  243 (719)
T ss_dssp             HHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECC
T ss_pred             eeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEcc
Confidence                 1124778877778887754221                                 15666666654421   111


Q ss_pred             c-----CCCCCceeEEEeCCCCeEEEE--ecC-CCceEEEec----cCCCceEEEE----EcCCCCce-----eEEEecC
Q psy8875         586 R-----SYLDEPRSLALNPIDGWMYWS--DWG-QNAKIERAG----MDGSHRNMVI----VSDIKWPN-----GLTLDLV  644 (734)
Q Consensus       586 ~-----~~l~~P~~iavD~~~g~LYwt--d~~-~~~~I~~~~----ldG~~~~~lv----~~~l~~P~-----glavD~~  644 (734)
                      .     ........+++.|. +++.++  +.. ....|+..+    +++...+.++    ...-.+..     .+++.+.
T Consensus       244 ~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spd  322 (719)
T 1z68_A          244 VPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYD  322 (719)
T ss_dssp             CCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTT
T ss_pred             CCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCC
Confidence            0     11223467888886 666555  321 124688887    5543322222    12112222     6778777


Q ss_pred             CCeEEEE-e--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCC------CCceEEEeccCC
Q psy8875         645 QRRLYWV-D--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQ------QKAIYKANKFTG  709 (734)
Q Consensus       645 ~~~LYw~-D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~------~~~v~~~~~~~G  709 (734)
                      +++||++ .  .+...|+.+++++...+.+....   ....++.. .+++||++...      ...|++++..+|
T Consensus       323 g~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~---~~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          323 AISYYKIFSDKDGYKHIHYIKDTVENAIQITSGK---WEAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             SSCEEEEEECTTSCEEEEEESSCSTTCEECSCSS---SCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             CCeEEEEEEccCCceEEEEEECCCCceEecccCc---eEEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            7777763 2  23457999998887755543211   11122222 56788887653      346777765444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.60  E-value=0.87  Score=56.20  Aligned_cols=227  Identities=9%  Similarity=-0.040  Sum_probs=132.6

Q ss_pred             ccceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeecc-CC
Q psy8875         482 KHDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWI-YS  559 (734)
Q Consensus       482 ~~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~-~~  559 (734)
                      +..|+..++..... ..+......+.+++|.+....|. +-...+.|...++..+..... +......+..+++.+. .+
T Consensus       636 d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~~~d~~v~vwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~  713 (1249)
T 3sfz_A          636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA-TCSADKKVKIWDSATGKLVHT-YDEHSEQVNCCHFTNKSNH  713 (1249)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEE-EECCSSCEEEEEECSSSSC
T ss_pred             CCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEE-EEeCCCeEEEEECCCCceEEE-EcCCCCcEEEEEEecCCCc
Confidence            34566666654433 33333456788999998655554 444678888888885544333 3334445667777654 34


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cC------
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SD------  632 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~------  632 (734)
                      .++++-...+.|.+.++........+.........+++.|...+|+....  .+.|...++........+. ..      
T Consensus       714 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~  791 (1249)
T 3sfz_A          714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA--DGTLRLWDVRSANERKSINVKRFFLSSE  791 (1249)
T ss_dssp             CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES--SSEEEEEEGGGTEEEEEEECCCCC----
T ss_pred             eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC--CCeEEEEeCCCCcccceecccccccccC
Confidence            45566666788999998776655555556667889999986665555542  3566666654333222211 11      


Q ss_pred             ------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEe
Q psy8875         633 ------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       633 ------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~  705 (734)
                            ......+++.+.+..|..+.  .+.|...++........+.. ........+++ ..+.+.++-...+.|...+
T Consensus       792 ~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd  868 (1249)
T 3sfz_A          792 DPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWN  868 (1249)
T ss_dssp             ----CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEE
T ss_pred             CccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence                  11345677877777777665  46788888765544333321 12334456666 2344444545556666666


Q ss_pred             ccCCCceEEE
Q psy8875         706 KFTGDNLTAI  715 (734)
Q Consensus       706 ~~~G~~~~~l  715 (734)
                      ..++..+..+
T Consensus       869 ~~~~~~~~~~  878 (1249)
T 3sfz_A          869 IDSRLKVADC  878 (1249)
T ss_dssp             TTTTEEEEEE
T ss_pred             cCCCceeeec
Confidence            6555544443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=96.59  E-value=0.97  Score=47.77  Aligned_cols=214  Identities=8%  Similarity=0.037  Sum_probs=120.2

Q ss_pred             ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++........+. ....+.+|+|.+....| ++-...+.|+..++..+..... +. ....+..+++.+..++
T Consensus       144 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~s~s~d~~v~iwd~~~~~~~~~-~~-~~~~v~~~~~~~~~~~  220 (393)
T 1erj_A          144 DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLT-LS-IEDGVTTVAVSPGDGK  220 (393)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTTEEEEE-EE-CSSCEEEEEECSTTCC
T ss_pred             CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEE-EEecCCCcEEEEECCCCeeEEE-EE-cCCCcEEEEEECCCCC
Confidence            3456666666554433333 44567899998866555 4555678888888875433222 22 2345677888876677


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEE-------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLV-------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---------  624 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~-------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---------  624 (734)
                      ++++-...+.|.+.++........+       ........+|++.|...+|+-..  ..+.|...++....         
T Consensus       221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-------------
T ss_pred             EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCCcccccCCC
Confidence            7777777788999988654432222       12334577899998665665544  23555555543211         


Q ss_pred             ---eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEEC-------CEEEEE
Q psy8875         625 ---RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFE-------DWLYWS  694 (734)
Q Consensus       625 ---~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~-------~~lywt  694 (734)
                         ....+.........+++.+.+.+|+ +-...+.|...++........+..  ......+|++..       +.++++
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~~~~~l~~--h~~~v~~v~~~~~~~~~p~~~~l~s  375 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQG--HRNSVISVAVANGSSLGPEYNVFAT  375 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEECC--CCCCEEEEEecCCcCcCCCCCEEEE
Confidence               1111222334456778875555554 444556788877665544433332  223345566542       456666


Q ss_pred             eCCCCceEE
Q psy8875         695 DWQQKAIYK  703 (734)
Q Consensus       695 d~~~~~v~~  703 (734)
                      -...+.|..
T Consensus       376 gs~Dg~i~i  384 (393)
T 1erj_A          376 GSGDCKARI  384 (393)
T ss_dssp             EETTSEEEE
T ss_pred             ECCCCcEEE
Confidence            555454433

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=96.58  E-value=0.0012  Score=78.94  Aligned_cols=31  Identities=48%  Similarity=1.090  Sum_probs=29.7

Q ss_pred             ccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         138 SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       138 ~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      +.|+|.+|+||+..|+|||..||.|+|||.+
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~  151 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERD  151 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTT
T ss_pred             cccccCCCceEccceecCCcccCCCcccccc
Confidence            5699999999999999999999999999988

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.57  E-value=0.3  Score=57.39  Aligned_cols=214  Identities=9%  Similarity=0.042  Sum_probs=120.4

Q ss_pred             cceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-------CCCC
Q psy8875         483 HDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-------DKTI  548 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-------~~~~  548 (734)
                      ..|.+++.....+..+..       ....+.+|..|. .+.||+ -...+.|.+++...+.........       ....
T Consensus       330 ~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-~g~lWi-Gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~  407 (795)
T 4a2l_A          330 GGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-DKNLWI-GTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNN  407 (795)
T ss_dssp             SCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-TSCEEE-EESSSCEEEECTTTCCEEEECCC------CCSCSC
T ss_pred             CCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-CCCEEE-EECCCCeEEEcCCCCcEEEEecCCCCcccCCCCcc
Confidence            566666655444443321       123467887774 455555 444557888877643332222111       1234


Q ss_pred             ccceeeeccCCc-EEEEeCCCCeEEEEeCCCCceEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         549 ADGLAVDWIYSH-IYWTDAHKNTIELANFEGTMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       549 p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                      +.+|+.| ..++ ||+... .+.|.+.+..+...+.+...    ....+.+|+.|+ .|.|++...   ..|.+.+.+..
T Consensus       408 v~~i~~d-~~g~~lWigt~-~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~~~  481 (795)
T 4a2l_A          408 IKAVYVD-EKKSLVYIGTH-AGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWLGTL---SALVRFNPEQR  481 (795)
T ss_dssp             EEEEEEE-TTTTEEEEEET-TTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEEEES---SCEEEEETTTT
T ss_pred             EEEEEEc-CCCCEEEEEeC-cCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEEEec---CceeEEeCCCC
Confidence            5678888 4567 666544 35688888776544444321    123567888886 577887763   45777776554


Q ss_pred             ceEEEEEc----CC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc--CCCCC--CCCeEEEEE-CCEEE
Q psy8875         624 HRNMVIVS----DI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY--SPQTL--SHPFSISTF-EDWLY  692 (734)
Q Consensus       624 ~~~~lv~~----~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~--~~~~~--~~P~gl~v~-~~~ly  692 (734)
                      ..+.+...    .+  .....|..| ..++|+++..  +.|.+++..+... .+..  ....+  ....+|..+ .+.||
T Consensus       482 ~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lW  557 (795)
T 4a2l_A          482 SFTTIEKEKDGTPVVSKQITTLFRD-SHKRLWIGGE--EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIW  557 (795)
T ss_dssp             EEEECCBCTTCCBCCCCCEEEEEEC-TTCCEEEEES--SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred             eEEEccccccccccCCceEEEEEEC-CCCCEEEEeC--CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence            33322211    11  345678887 5778887775  5788888765544 3221  11112  234566664 56777


Q ss_pred             EEeCCCCceEEEeccCCC
Q psy8875         693 WSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       693 wtd~~~~~v~~~~~~~G~  710 (734)
                      ++..+  .|+++++.+++
T Consensus       558 igT~~--Gl~~~d~~~~~  573 (795)
T 4a2l_A          558 VGTRE--GFYCFNEKDKQ  573 (795)
T ss_dssp             EEESS--CEEEEETTTTE
T ss_pred             EEeCC--CceeECCCCCc
Confidence            76654  68888875553

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.52  E-value=0.83  Score=46.13  Aligned_cols=183  Identities=7%  Similarity=0.062  Sum_probs=100.5

Q ss_pred             ccceEEeecCCC---ceEEEecCCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeec
Q psy8875         482 KHDIRKISLDHH---EMTAIVNSTKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDW  556 (734)
Q Consensus       482 ~~~I~~i~l~~~---~~~~l~~~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~  556 (734)
                      +..|+..++.+.   ....+......+.+|+|.+. .+.++.+-...+.|+..++..+.. ....+......+..|++.+
T Consensus        30 D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p  109 (297)
T 2pm7_B           30 DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP  109 (297)
T ss_dssp             TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECC
T ss_pred             CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCc
Confidence            344555555432   22333334456778888643 356666766788888888775432 1122222234466777776


Q ss_pred             cC-CcEEEEeCCCCeEEEEeCCCCc--eEEEEcCCCCCceeEEEeCCC------------CeEEEEecCCCceEEEeccC
Q psy8875         557 IY-SHIYWTDAHKNTIELANFEGTM--RKVLVRSYLDEPRSLALNPID------------GWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       557 ~~-~~lY~td~~~~~I~~~~ldG~~--~~~l~~~~l~~P~~iavD~~~------------g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .. +.++.+-...+.|.+.++....  ...++.........+++.|..            +.++.+-. ..+.|...++.
T Consensus       110 ~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lwd~~  188 (297)
T 2pm7_B          110 HEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYN  188 (297)
T ss_dssp             GGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEE-TTSCEEEEEEE
T ss_pred             CCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEc-CCCcEEEEEEc
Confidence            42 5566666667889888886432  122333444556778887752            34555542 23445444443


Q ss_pred             CCc-eE---EEEEcCCCCceeEEEecCC--CeEEEEeCCCCeEEEEecCC
Q psy8875         622 GSH-RN---MVIVSDIKWPNGLTLDLVQ--RRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       622 G~~-~~---~lv~~~l~~P~glavD~~~--~~LYw~D~~~~~I~~~~~dG  665 (734)
                      ... ..   ..+.........|++.+..  +.++.+-+..+.|...+++.
T Consensus       189 ~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          189 SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            322 11   1122233456788887654  45556655666777777654

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.51  E-value=0.92  Score=47.70  Aligned_cols=200  Identities=9%  Similarity=0.030  Sum_probs=114.5

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe----CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-C
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE----EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-G  578 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~----~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G  578 (734)
                      .+..++|.+..+..+++-...+.|...++..+.....+..    .....+..+++.+..++++++-...+.|.+.++. +
T Consensus       159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            4456667665566566666778888888875543332211    1122345667766678888888888999999986 2


Q ss_pred             CceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-------CCCceeEEEecCCCeEEEE
Q psy8875         579 TMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-------IKWPNGLTLDLVQRRLYWV  651 (734)
Q Consensus       579 ~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-------l~~P~glavD~~~~~LYw~  651 (734)
                      ......+.........|++.|.. .++.+- +..+.|...++.......++...       ......+++.+.+..| ++
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~-s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~  315 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDG-QRFGTG-SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FA  315 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTS-SEEEEE-CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EE
T ss_pred             CcceEEECCcCCCeEEEEEecCC-CeEEEE-cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEE-EE
Confidence            22222333455678899999854 444454 23466777776544333333211       1235688887655554 45


Q ss_pred             eCCCCeEEEEecCCCceEEEEcC--CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875         652 DAKLNEISSCDYNGGNRRLVLYS--PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       652 D~~~~~I~~~~~dG~~~~~i~~~--~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~  706 (734)
                      -...+.|...++........+..  .........|++. .+.++++-...+.|...+.
T Consensus       316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~  373 (380)
T 3iz6_a          316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF  373 (380)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred             EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence            55677888888654443322211  1122234567773 4445555555566655543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.51  E-value=0.91  Score=46.55  Aligned_cols=160  Identities=8%  Similarity=0.010  Sum_probs=94.8

Q ss_pred             CCcceEEEeeeccC--CeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFRT--GMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~~--~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+..|+|.+..  +.+.++-...+.|+..++..... ....+......+..|++.+.+..|+ +-...+.|.+.++.
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~  116 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLS  116 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETT
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcC
Confidence            34567889999865  56666666778888888774222 2233333445677888887555555 44456899999998


Q ss_pred             CCceEEEEcCCCCCceeEEE--eCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875         578 GTMRKVLVRSYLDEPRSLAL--NPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       578 G~~~~~l~~~~l~~P~~iav--D~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ......+. ........+++  .+...+|+...  ..+.|...++........+...   ...++++.....++.+.. .
T Consensus       117 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~  189 (368)
T 3mmy_A          117 SNQAIQIA-QHDAPVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRSSNPMMVLQLP---ERCYCADVIYPMAVVATA-E  189 (368)
T ss_dssp             TTEEEEEE-ECSSCEEEEEEEECSSCEEEEEEE--TTSEEEEECSSCSSCSEEEECS---SCEEEEEEETTEEEEEEG-G
T ss_pred             CCCceeec-cccCceEEEEEEeCCCCCEEEEcc--CCCcEEEEECCCCcEEEEEecC---CCceEEEecCCeeEEEeC-C
Confidence            76654443 34456788888  65443444443  3467777776543322222211   134555555666665543 3


Q ss_pred             CeEEEEecCCCce
Q psy8875         656 NEISSCDYNGGNR  668 (734)
Q Consensus       656 ~~I~~~~~dG~~~  668 (734)
                      +.|...++.....
T Consensus       190 ~~i~~~~~~~~~~  202 (368)
T 3mmy_A          190 RGLIVYQLENQPS  202 (368)
T ss_dssp             GCEEEEECSSSCE
T ss_pred             CcEEEEEeccccc
Confidence            4566666655433

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.12  Score=60.35  Aligned_cols=207  Identities=7%  Similarity=0.017  Sum_probs=115.0

Q ss_pred             CCcceEEEeeeccC-CeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFRT-GMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~~-~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+.+|+|.+.. +.++.+-...+.|+..++..+.. ....+......+..+++.+.. +.++++-...+.|.+.++.
T Consensus        52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~  131 (753)
T 3jro_A           52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK  131 (753)
T ss_dssp             CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred             CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence            34567789987652 45555656778888888875432 222222234456788888662 5555565667899999886


Q ss_pred             CC--ceEEEEcCCCCCceeEEEeCC------------CCeEEEEecCCCceEEEeccCCCce--EEE--EEcCCCCceeE
Q psy8875         578 GT--MRKVLVRSYLDEPRSLALNPI------------DGWMYWSDWGQNAKIERAGMDGSHR--NMV--IVSDIKWPNGL  639 (734)
Q Consensus       578 G~--~~~~l~~~~l~~P~~iavD~~------------~g~LYwtd~~~~~~I~~~~ldG~~~--~~l--v~~~l~~P~gl  639 (734)
                      ..  .....+.........+++.|.            .+.++++.. ..+.|...++.....  ..+  +...-.....|
T Consensus       132 ~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l  210 (753)
T 3jro_A          132 ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV  210 (753)
T ss_dssp             SSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE
T ss_pred             cCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEE
Confidence            55  222333345567788999885            244444432 235565555543321  211  12233446788


Q ss_pred             EEecCC--CeEEEEeCCCCeEEEEecCCCce---EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccC
Q psy8875         640 TLDLVQ--RRLYWVDAKLNEISSCDYNGGNR---RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       640 avD~~~--~~LYw~D~~~~~I~~~~~dG~~~---~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~  708 (734)
                      ++.+..  +.++++-...+.|...++.....   ..+...........+|++. .+.++++-...+.|...+..+
T Consensus       211 ~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            888663  55555655567787777665421   1121111122234566773 444555555556666555443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.42  E-value=0.42  Score=55.85  Aligned_cols=197  Identities=7%  Similarity=-0.038  Sum_probs=114.1

Q ss_pred             ceEEEeee-ccCCeEEEEEeCCC----cEEEEecCCC-CceEEEEeCCCCCccceeeeccCCcEEEEeCCC----CeEEE
Q psy8875         504 SATAIDFV-FRTGMIFWSDISEK----KIYKAPIDEG-SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK----NTIEL  573 (734)
Q Consensus       504 ~~~~i~~d-~~~~~lyw~d~~~~----~I~~~~l~~g-~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~----~~I~~  573 (734)
                      ...+++|. +...+|.|+....+    .|+.+++++| ......+. .  ...+++..+.++.||++....    .+|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~--~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-G--TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-E--ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-C--ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            45667888 87777777654432    4999999866 42111111 0  134566666677788875431    37899


Q ss_pred             EeCCCCc--eEEEEcC-CCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCc--e--EEEEEcCCCCceeEEEe-cC
Q psy8875         574 ANFEGTM--RKVLVRS-YLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSH--R--NMVIVSDIKWPNGLTLD-LV  644 (734)
Q Consensus       574 ~~ldG~~--~~~l~~~-~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~--~--~~lv~~~l~~P~glavD-~~  644 (734)
                      .++.+..  .+.+... ....-.++++.|...+|+|+.+. ....|+.+++++..  .  +.++. ....+ -..+| ..
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~-~~s~~~~~  329 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGV-RYDVQMHG  329 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTC-CEEEEEET
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCc-eEEEeeee
Confidence            9997754  2233322 22233567788888888888653 34689999887642  2  32322 21112 13344 45


Q ss_pred             CCeEEEEeC----CCCeEEEEecCC-CceEE-EEcCCCCCCCCeEEEEECCEEEEEeCC--CCceEEEec
Q psy8875         645 QRRLYWVDA----KLNEISSCDYNG-GNRRL-VLYSPQTLSHPFSISTFEDWLYWSDWQ--QKAIYKANK  706 (734)
Q Consensus       645 ~~~LYw~D~----~~~~I~~~~~dG-~~~~~-i~~~~~~~~~P~gl~v~~~~lywtd~~--~~~v~~~~~  706 (734)
                      +++|||...    ...+|+++++++ ...+. ++.... -....++++++++||++-..  ...|+.++.
T Consensus       330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~-~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE-DVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS-SEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC-CcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            788888743    345899999875 33333 443211 11234567778888887543  335666664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.22  Score=58.25  Aligned_cols=205  Identities=8%  Similarity=-0.029  Sum_probs=114.5

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..+.+++|++....|+.. ...+.|...++.++....+ .+......+..|++.+.. ++++++-...+.|.+.++.+..
T Consensus        10 ~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            456788888765554443 4567777777653332222 222233445667765442 5566666667889999887664


Q ss_pred             --eEEEEcCCCCCceeEEEeCC--CCeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecC----------
Q psy8875         581 --RKVLVRSYLDEPRSLALNPI--DGWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLV----------  644 (734)
Q Consensus       581 --~~~l~~~~l~~P~~iavD~~--~g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~----------  644 (734)
                        ..............+++.|.  ...|+...  ..+.|...++...  .....+.........|++.+.          
T Consensus        89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~  166 (753)
T 3jro_A           89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG  166 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred             ccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence              22233345567789999987  44555544  3467777666544  223333344445677888764          


Q ss_pred             --CCeEEEEeCCCCeEEEEecCCCc-e-EEEEcCCCCCCCCeEEEEE-C---CEEEEEeCCCCceEEEeccCCC
Q psy8875         645 --QRRLYWVDAKLNEISSCDYNGGN-R-RLVLYSPQTLSHPFSISTF-E---DWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       645 --~~~LYw~D~~~~~I~~~~~dG~~-~-~~i~~~~~~~~~P~gl~v~-~---~~lywtd~~~~~v~~~~~~~G~  710 (734)
                        ++.++++-...+.|...++.... . ..+...........+|++. .   +.++++-...+.|...+..+++
T Consensus       167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence              24444454556777777765442 1 2221111222334567773 2   4566665555667666655553

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.40  E-value=0.54  Score=55.22  Aligned_cols=223  Identities=6%  Similarity=-0.034  Sum_probs=124.0

Q ss_pred             eeeeeeccceEEeecCCCceEEEecC--------CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe---C
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVNS--------TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE---E  544 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~~--------~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~---~  544 (734)
                      .|.+.....|.+++.....+..+...        ...+.+|..|. .+.||+. ...+.|.+++...+........   .
T Consensus       275 ~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~~~  352 (795)
T 4a2l_A          275 RLWIGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLG-TYFGGLNYYHPIRNRFKNIRNIPYKN  352 (795)
T ss_dssp             CEEEEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEE-ESSSCEEEECGGGGSSEEECCCTTSS
T ss_pred             CEEEEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEE-ECCCCeEEeCCCcccceEEcCCCCCC
Confidence            44555445777777665555544321        13567787874 5555544 4456688877653332222111   0


Q ss_pred             C--CCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC--------CCCCceeEEEeCCCCe-EEEEecCCCc
Q psy8875         545 D--KTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS--------YLDEPRSLALNPIDGW-MYWSDWGQNA  613 (734)
Q Consensus       545 ~--~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~--------~l~~P~~iavD~~~g~-LYwtd~~~~~  613 (734)
                      .  ...+.+|+.| ..++|++... .+.|.+.+......+.+...        ......+|+.|+ .|. ||+...+  .
T Consensus       353 ~l~~~~V~~i~~d-~~g~lWiGt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~--~  427 (795)
T 4a2l_A          353 SLSDNVVSCIVED-KDKNLWIGTN-DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHA--G  427 (795)
T ss_dssp             SCSCSSEEEEEEC-TTSCEEEEES-SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETT--T
T ss_pred             CCCCCeeEEEEEC-CCCCEEEEEC-CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCc--C
Confidence            1  1235677777 4567777654 34577777765443333211        124567888886 466 7766532  4


Q ss_pred             eEEEeccCCCceEEEEEc----CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC--CCCC--CCCeEEE
Q psy8875         614 KIERAGMDGSHRNMVIVS----DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS--PQTL--SHPFSIS  685 (734)
Q Consensus       614 ~I~~~~ldG~~~~~lv~~----~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~--~~~~--~~P~gl~  685 (734)
                      .|.+.+......+.+...    .......|+.| ..++|+++..  +.|.+++......+.+...  ...+  ....+|.
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~  504 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPD-GEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLF  504 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEEC-SSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEE
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEEC-CCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEE
Confidence            688887765443333211    11245678887 4677877765  5688888765544333221  0111  2345666


Q ss_pred             EE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875         686 TF-EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       686 v~-~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .+ .+.||++..  +.|+++++.+++
T Consensus       505 ~d~~g~lWigt~--~Gl~~~~~~~~~  528 (795)
T 4a2l_A          505 RDSHKRLWIGGE--EGLSVFKQEGLD  528 (795)
T ss_dssp             ECTTCCEEEEES--SCEEEEEEETTE
T ss_pred             ECCCCCEEEEeC--CceEEEeCCCCe
Confidence            64 567777765  468888765554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.40  E-value=0.25  Score=53.53  Aligned_cols=122  Identities=7%  Similarity=-0.066  Sum_probs=77.5

Q ss_pred             cceEEEeeeccCCeEEE---EEeCCCcEEEEecCCC-----Cce----EEE-EeCCCCCccceeeeccCCcEEEEeCCCC
Q psy8875         503 KSATAIDFVFRTGMIFW---SDISEKKIYKAPIDEG-----SER----TVV-IEEDKTIADGLAVDWIYSHIYWTDAHKN  569 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw---~d~~~~~I~~~~l~~g-----~~~----~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~  569 (734)
                      ..+.+|+|++....|++   +....+.|+..++..+     ...    .+. +......+.+|++.+..++++.+-...+
T Consensus        93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred             CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence            45789999988777776   3334566766665422     110    111 1111345678888877678888877789


Q ss_pred             eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         570 TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       570 ~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      .|.+.++...............+..+++.|...+|+...  ..+.|...++.|....
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs--~dg~v~iwd~~~~~~~  227 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK--QNGTVVQYLPTLQEKK  227 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE--TTSCEEEECTTCCEEE
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc--CCCcEEEEccCCcccc
Confidence            999999876533322223345788999999866666655  3467888888755443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.40  E-value=0.55  Score=54.06  Aligned_cols=208  Identities=9%  Similarity=0.000  Sum_probs=116.2

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      .....+..|++.+... +..+-...+.|+..++..+.....+ ......+..|++.+.++.|. +-...+.|.+.++.+.
T Consensus       428 ~h~~~v~~v~~s~~g~-~l~sgs~Dg~v~vwd~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          428 GHSHFVEDVVLSSDGQ-FALSGSWDGELRLWDLAAGVSTRRF-VGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGE  504 (694)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSC
T ss_pred             CCCCcEEEEEECCCCC-EEEEEeCCCcEEEEECCCCcceeEE-eCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCC
Confidence            3455678899987554 4455556788888888754433333 33445577888886655554 5455688999988776


Q ss_pred             ceEEEEcC---CCCCceeEEEeCCCC-eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875         580 MRKVLVRS---YLDEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       580 ~~~~l~~~---~l~~P~~iavD~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ....+...   .......+++.|... .++++- +..+.|...++........+.........|++.+.+. ++.+-...
T Consensus       505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~D  582 (694)
T 3dm0_A          505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA-SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKD  582 (694)
T ss_dssp             EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             cceeeccCCCCCCCcEEEEEEeCCCCcceEEEE-eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC-EEEEEeCC
Confidence            55544422   233467888887642 234443 2346677777765544444444445567899986554 44454556


Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      +.|...++........+.   ......+|++..+..+++-...+.|...+..+++.+..+
T Consensus       583 g~i~iwd~~~~~~~~~~~---~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          583 GVVLLWDLAEGKKLYSLE---ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             SBCEEEETTTTEEEECCB---CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCceEEEec---CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhh
Confidence            778877775443222111   112234555533222222222334555555555444433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.38  E-value=0.085  Score=55.30  Aligned_cols=197  Identities=13%  Similarity=0.019  Sum_probs=103.5

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC--ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS--ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG  578 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~--~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG  578 (734)
                      ....+.+|+|.+....|+ +-...+.|+..++..+.  .....+......+..|++.+....|+... ..+.|.+.+++.
T Consensus        54 h~~~v~~~~~s~~~~~l~-s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~  131 (377)
T 3dwl_C           54 HDKIVTCVDWAPKSNRIV-TCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQ  131 (377)
T ss_dssp             CSSCEEEEEECTTTCCEE-EEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC--
T ss_pred             CCceEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECC
Confidence            345678899988655554 44456778887777543  12222222344567788876555555544 467888888876


Q ss_pred             Cc----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc---------------eEEEEE--cCCCCce
Q psy8875         579 TM----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH---------------RNMVIV--SDIKWPN  637 (734)
Q Consensus       579 ~~----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~---------------~~~lv~--~~l~~P~  637 (734)
                      ..    ...+..........|++.|...+|.....  .+.|...++....               ...++.  .......
T Consensus       132 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  209 (377)
T 3dwl_C          132 ENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVH  209 (377)
T ss_dssp             ---CCCCEEECSSCCSCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEE
T ss_pred             cccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEE
Confidence            54    33333225567889999986655555543  3455555542110               111221  2233467


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCce-----EEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEec
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNR-----RLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~  706 (734)
                      .|++.+.+.+|+.+. ..+.|...++.....     ..+.   .......+|++ ..+.++.+-.. +.++.+..
T Consensus       210 ~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~-~~~~~~~~  279 (377)
T 3dwl_C          210 AVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALITVK---LSQLPLRSLLWANESAIVAAGYN-YSPILLQG  279 (377)
T ss_dssp             EEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCCEE---CSSSCEEEEEEEETTEEEEEESS-SSEEEECC
T ss_pred             EEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEeec---CCCCceEEEEEcCCCCEEEEEcC-CcEEEEEe
Confidence            889987666666554 456777777665443     2221   11223456777 35565555544 44445543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.37  E-value=0.15  Score=49.42  Aligned_cols=149  Identities=13%  Similarity=0.026  Sum_probs=90.9

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEe
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELAN  575 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~  575 (734)
                      ..+...|++++ ++.||-+  ..+.|++.+...+..      .+.+-..+...-..|.+| .++.||.+  ..++|++.+
T Consensus        40 w~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           40 WSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             CTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEES
T ss_pred             cccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeC
Confidence            55677999999 8999999  678899998753111      233322233445789999 78999999  348999987


Q ss_pred             C--CCCc-----eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CC------ceEEEEEcCCCCceeEEE
Q psy8875         576 F--EGTM-----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GS------HRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       576 l--dG~~-----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~------~~~~lv~~~l~~P~glav  641 (734)
                      .  ++..     -.+|....-..-..|+++| .|.||-.. .  ++|++...- +.      ..+++.......-.=|.+
T Consensus       114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f  189 (236)
T 1tl2_A          114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF  189 (236)
T ss_dssp             CCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred             CCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--CcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence            6  3322     1234344445668899997 68899887 3  456553332 11      122333222222222444


Q ss_pred             ecCCCeEEEEeCCCCeEEEEec
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDY  663 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~  663 (734)
                      + .++.||++.  .++|++...
T Consensus       190 ~-~~G~l~~v~--~g~~Y~~~~  208 (236)
T 1tl2_A          190 S-SVGTLFGVQ--GGKFYEDYP  208 (236)
T ss_dssp             C-TTSCEEEEE--TTEEEEESC
T ss_pred             C-CCCcEEEEe--CCeEEecCC
Confidence            3 566777777  556776543

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=96.36  E-value=0.00081  Score=67.57  Aligned_cols=44  Identities=25%  Similarity=0.659  Sum_probs=35.3

Q ss_pred             cccccccCCCCCc--CccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         388 GVDECAKDNGGCL--HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       388 ~~~eC~~~~~~C~--~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      ++|||......|.  +.|+|++++|.|.|++||..  +++.|.++|+.
T Consensus         4 DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~G--nG~~C~d~d~P   49 (285)
T 1gl4_A            4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG--NGRQCVAEGSP   49 (285)
T ss_dssp             ---CHHHHGGGSCTTEEEEECSSCEEEEECTTEEE--CSSSEEETTCE
T ss_pred             cchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCC--CCCcCCCCCCC
Confidence            5789986666786  47999999999999999986  78899998874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.36  E-value=0.69  Score=47.93  Aligned_cols=196  Identities=10%  Similarity=-0.062  Sum_probs=103.8

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEE-eCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVI-EEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~-~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      .+..|+|.+....| .+-...+.|+..++.++... ...+ ......+..|++.+.++.|. +-...+.|.+.++.....
T Consensus        18 ~v~~l~~sp~g~~l-as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           18 RCWFLAWNPAGTLL-ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDDF   95 (345)
T ss_dssp             CEEEEEECTTSSCE-EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEE-EEETTSCEEEEEECCC-E
T ss_pred             cEEEEEECCCCCEE-EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEE-EEECCCcEEEEEccCCCe
Confidence            56788998855444 45556677777776643321 1222 22334567888886555444 444467777777665432


Q ss_pred             E--EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce-E--EEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         582 K--VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR-N--MVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       582 ~--~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~-~--~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      .  ..+.........|++.|...+|.-...  .+.|...+++.... .  ..+.........|++.+.+..|..+. ..+
T Consensus        96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~  172 (345)
T 3fm0_A           96 ECVTTLEGHENEVKSVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDD  172 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTS
T ss_pred             EEEEEccCCCCCceEEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCC
Confidence            2  233344566789999986555554442  35555555543322 1  12223334457788876666555443 445


Q ss_pred             eEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEE
Q psy8875         657 EISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKA  704 (734)
Q Consensus       657 ~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~  704 (734)
                      .|...++.......+...........+|++. .+.++++-...+.|...
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW  221 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW  221 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence            6666666554332222111223344567773 34444443334444433

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.34  E-value=0.0017  Score=60.26  Aligned_cols=42  Identities=29%  Similarity=0.680  Sum_probs=35.7

Q ss_pred             cccccccC-CCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         388 GVDECAKD-NGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       388 ~~~eC~~~-~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      +++||... ...|++.|.|.+++|+|.|++||.|..++++|++
T Consensus       116 d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             ECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             cCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCcccc
Confidence            56788753 3579999999999999999999999999999974

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.32  E-value=0.011  Score=68.58  Aligned_cols=124  Identities=10%  Similarity=0.091  Sum_probs=80.5

Q ss_pred             eeccceEEeecCCCceEEEecCCc----ceEEEeeeccCCeEEEEEeC--------CCcEEEEecCCCCceE-EEEeCCC
Q psy8875         480 ARKHDIRKISLDHHEMTAIVNSTK----SATAIDFVFRTGMIFWSDIS--------EKKIYKAPIDEGSERT-VVIEEDK  546 (734)
Q Consensus       480 ~~~~~I~~i~l~~~~~~~l~~~~~----~~~~i~~d~~~~~lyw~d~~--------~~~I~~~~l~~g~~~~-~~~~~~~  546 (734)
                      .....|+..++.+.....+.....    .+..++|.+..++|.++...        .+.|+..+++++.... ..+.   
T Consensus        33 ~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~---  109 (719)
T 1z68_A           33 SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP---  109 (719)
T ss_dssp             CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC---
T ss_pred             cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC---
Confidence            345678888888777666654322    26788999888888776532        3678888887543200 1111   


Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC------------------CCceeEEEeCCCCeEEEEe
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL------------------DEPRSLALNPIDGWMYWSD  608 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l------------------~~P~~iavD~~~g~LYwtd  608 (734)
                      ..+..+++.+.++.|.++.  .+.|++.++.+.....+.....                  ....++++.|...+|+++.
T Consensus       110 ~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          110 RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence            3466788888888888875  4689999987655444332211                  2225899998877777654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=96.31  E-value=0.12  Score=55.76  Aligned_cols=180  Identities=15%  Similarity=0.085  Sum_probs=103.9

Q ss_pred             ccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC--CCCccceeeec
Q psy8875         482 KHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED--KTIADGLAVDW  556 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~--~~~p~glAvD~  556 (734)
                      +..|+.-++.......++.   ....+.+|+|.+..+.++++-...+.|...++.+ .....+....  ......+++.+
T Consensus       141 dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~  219 (435)
T 4e54_B          141 GGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-NILRVFASSDTINIWFCSLDVSA  219 (435)
T ss_dssp             TSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS-CEEEEEECCSSCSCCCCCEEEET
T ss_pred             CCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC-CceeEEeccCCCCccEEEEEECC
Confidence            3456665665444333332   3456789999987677777777788888888874 3333333222  12345677775


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC-ceEEEEE--cCC
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIV--SDI  633 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~--~~l  633 (734)
                      . +.++++-...+.|.+.++++.....+. .......+|++.|....++.+-.. .+.|...++... ....++.  ...
T Consensus       220 ~-~~~l~~g~~dg~i~~wd~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iwd~~~~~~~~~~~~~~~h~  296 (435)
T 4e54_B          220 S-SRMVVTGDNVGNVILLNMDGKELWNLR-MHKKKVTHVALNPCCDWFLATASV-DQTVKIWDLRQVRGKASFLYSLPHR  296 (435)
T ss_dssp             T-TTEEEEECSSSBEEEEESSSCBCCCSB-CCSSCEEEEEECTTCSSEEEEEET-TSBCCEEETTTCCSSSCCSBCCBCS
T ss_pred             C-CCEEEEEeCCCcEeeeccCcceeEEEe-cccceEEeeeecCCCceEEEEecC-cceeeEEecccccccceEEEeeecc
Confidence            4 455666666789999999886543332 334567899999887777766532 234444343221 1111111  112


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ...+.|++++.+.+|+.+ ...+.|...++...
T Consensus       297 ~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~~  328 (435)
T 4e54_B          297 HPVNAACFSPDGARLLTT-DQKSEIRVYSASQW  328 (435)
T ss_dssp             SCEEECCBCTTSSEEEEE-ESSSCEEEEESSSS
T ss_pred             ccccceeECCCCCeeEEE-cCCCEEEEEECCCC
Confidence            234677777655555544 34567777776543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.30  E-value=1.2  Score=45.82  Aligned_cols=197  Identities=11%  Similarity=0.007  Sum_probs=101.7

Q ss_pred             cceEEEee-----eccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeCCCCCccceeeeccCCcEEEEeCCCCeE
Q psy8875         503 KSATAIDF-----VFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTI  571 (734)
Q Consensus       503 ~~~~~i~~-----d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I  571 (734)
                      ..+.+|+|     .+..+.+..+-...+.|+..++..+..      ....+......+..|++.+. +.+.++-...+.|
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v  100 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTL  100 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEE
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcE
Confidence            34566766     333556666666677777766653211      11222223345677888754 4455566667899


Q ss_pred             EEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE--cCCCCceeEEEecCC----
Q psy8875         572 ELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV--SDIKWPNGLTLDLVQ----  645 (734)
Q Consensus       572 ~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~--~~l~~P~glavD~~~----  645 (734)
                      .+.++........+.........+++.|...+|+-...  .+.|...++.+.....+..  ........+++.+..    
T Consensus       101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R          101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA--EREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET--TSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred             EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC--CCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence            99998654443333345567789999987666665542  3556666665433222110  111233455555433    


Q ss_pred             -----CeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875         646 -----RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       646 -----~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~  705 (734)
                           +.++.+-...+.|...+..+.....+..   .......|++. .+.++++-...+.|...+
T Consensus       179 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKA---HESNVNHLSISPNGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             CCCSSCCEEEEEETTSEEEEEETTTEEEEEEEC---CSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred             ccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcC---ccccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence                 1344444455677776654433333321   12233455552 233333333334444444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.26  E-value=1.2  Score=51.24  Aligned_cols=69  Identities=10%  Similarity=0.057  Sum_probs=38.2

Q ss_pred             CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEecccc-cCCCcc
Q psy8875         656 NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ-THEPLN  726 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~-l~~P~~  726 (734)
                      +.|..+++......--+...... .--.++..++.||... ..+.|+.++..+|+.+..+...+. ...|+.
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~~-~~g~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~t  524 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTIF-NGGTLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQPAASGVMAAPVT  524 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             eeEEEEECCCCCeEeEccCCCCc-cCccceECCCEEEEEC-CCCcEEEEECCCCccceeeeCCCCcccCceE
Confidence            45777777544322222111111 1113455677888774 457899999999998876653322 235554

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.23  E-value=0.48  Score=55.54  Aligned_cols=222  Identities=9%  Similarity=-0.055  Sum_probs=123.7

Q ss_pred             eeeee-ccceEEeecCCCceEEEec----------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE--e
Q psy8875         477 LLFAR-KHDIRKISLDHHEMTAIVN----------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI--E  543 (734)
Q Consensus       477 l~~~~-~~~I~~i~l~~~~~~~l~~----------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~--~  543 (734)
                      |.+.. ...|.++......+..+..          ....+.+|..|. .+.||+.. ..+.|++++...+.......  .
T Consensus       326 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~  403 (781)
T 3v9f_A          326 IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGT-DGGGINVFENGKRVAIYNKENRE  403 (781)
T ss_dssp             EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEE-BSSCEEEEETTEEEEECC-----
T ss_pred             EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEe-CCCcEEEEECCCCeEEEccCCCC
Confidence            44443 5667777665544444321          123467787774 46666553 34568887765221111100  0


Q ss_pred             CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC--CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         544 EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS--YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       544 ~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~--~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .....+.+|+.| ..++||+... .+.|.+.+......+.+...  ....+.+|+.|+ .|.||+...   ..|.+.+..
T Consensus       404 ~~~~~v~~i~~d-~~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~  477 (781)
T 3v9f_A          404 LLSNSVLCSLKD-SEGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH---AGVFVIDLA  477 (781)
T ss_dssp             CCCSBEEEEEEC-TTSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET---TEEEEEESS
T ss_pred             CCCcceEEEEEC-CCCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC---CceEEEeCC
Confidence            112345677777 4577777654 35677877754433333211  234677888886 577877763   468888776


Q ss_pred             CCceEEEEEcC-----CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCC--CCeEEEEE-CCEEEE
Q psy8875         622 GSHRNMVIVSD-----IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLS--HPFSISTF-EDWLYW  693 (734)
Q Consensus       622 G~~~~~lv~~~-----l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~--~P~gl~v~-~~~lyw  693 (734)
                      ....+.+....     ...+.+|+.| ..++|+++... +.|.+++.++...+.+... ..+.  ...+|..+ .+.||+
T Consensus       478 ~~~~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~-~~l~~~~i~~i~~d~~g~lWi  554 (781)
T 3v9f_A          478 SKKVIHHYDTSNSQLLENFVRSIAQD-SEGRFWIGTFG-GGVGIYTPDMQLVRKFNQY-EGFCSNTINQIYRSSKGQMWL  554 (781)
T ss_dssp             SSSCCEEECTTTSSCSCSCEEEEEEC-TTCCEEEEESS-SCEEEECTTCCEEEEECTT-TTCSCSCEEEEEECTTSCEEE
T ss_pred             CCeEEecccCcccccccceeEEEEEc-CCCCEEEEEcC-CCEEEEeCCCCeEEEccCC-CCCCCCeeEEEEECCCCCEEE
Confidence            54433333221     2456788888 57778777643 4588888776655444321 2232  23566664 567777


Q ss_pred             EeCCCCceEEEeccCCC
Q psy8875         694 SDWQQKAIYKANKFTGD  710 (734)
Q Consensus       694 td~~~~~v~~~~~~~G~  710 (734)
                      +.. .+.|+++++.+++
T Consensus       555 ~T~-~Glv~~~d~~~~~  570 (781)
T 3v9f_A          555 ATG-EGLVCFPSARNFD  570 (781)
T ss_dssp             EET-TEEEEESCTTTCC
T ss_pred             EEC-CCceEEECCCCCc
Confidence            665 3433777765554

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.23  E-value=1.7  Score=46.55  Aligned_cols=196  Identities=10%  Similarity=0.006  Sum_probs=109.4

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      .+.+++++   +..+++-...+.|+..++..+..... +......+..|++   .+.+.++-...+.|.+.++.......
T Consensus       135 ~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          135 GVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRI-LTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             CEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEE-ECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             cEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEE-EcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            45566664   34445555677888888775443333 3222334444554   35566666667899999987555444


Q ss_pred             EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE---EEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         584 LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN---MVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       584 l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~---~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      .+.........++++  .+.|+...  ..+.|...++......   ..+.........|++  .++.|+.+. ..+.|..
T Consensus       208 ~~~~h~~~v~~l~~~--~~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~-~dg~i~v  280 (435)
T 1p22_A          208 TLIHHCEAVLHLRFN--NGMMVTCS--KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSAS-GDRTIKV  280 (435)
T ss_dssp             EECCCCSCEEEEECC--TTEEEEEE--TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEE-TTSEEEE
T ss_pred             EEcCCCCcEEEEEEc--CCEEEEee--CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEe-CCCeEEE
Confidence            444444556677765  34555444  2456666666543322   222223333455665  355555554 4578888


Q ss_pred             EecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         661 CDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       661 ~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .++........+..  .......+++.++.|+... ..+.|...+..+|+.+..+.
T Consensus       281 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~g~-~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          281 WNTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGS-SDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             EETTTCCEEEEEEC--CSSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEEEC
T ss_pred             EECCcCcEEEEEcC--CCCcEEEEEeCCCEEEEEe-CCCeEEEEECCCCCEEEEEe
Confidence            88765544333332  2233455666655554444 44677777777776665554

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.22  E-value=1.2  Score=45.08  Aligned_cols=203  Identities=11%  Similarity=-0.017  Sum_probs=103.7

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ......+.+.+....| ++-...+.|...++................+..+++.+.. ..++++-...+.|.+.++....
T Consensus       128 ~~~~~~~~~~~~~~~l-~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~  206 (340)
T 4aow_A          128 TKDVLSVAFSSDNRQI-VSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK  206 (340)
T ss_dssp             SSCEEEEEECTTSSCE-EEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE
T ss_pred             CCceeEEEEeecCccc-eeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc
Confidence            3444555555544444 3444556666666552221111111122334455655444 3455565566788888887665


Q ss_pred             eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         581 RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       581 ~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      ....+........+|++.|...+|+-..  ..+.|...++........+. .-.....+++.+.+ ++. +-...+.|..
T Consensus       207 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~-~~~-~~~~d~~i~i  281 (340)
T 4aow_A          207 LKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAMLWDLNEGKHLYTLD-GGDIINALCFSPNR-YWL-CAATGPSIKI  281 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEE-CSSCEEEEEECSSS-SEE-EEEETTEEEE
T ss_pred             eeeEecCCCCcEEEEEECCCCCEEEEEe--CCCeEEEEEeccCceeeeec-CCceEEeeecCCCC-cee-eccCCCEEEE
Confidence            5555545556678999998655554443  34667776666543332222 22345666775433 333 3233567777


Q ss_pred             EecCCCceEEEEcCC-------CCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCC
Q psy8875         661 CDYNGGNRRLVLYSP-------QTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       661 ~~~dG~~~~~i~~~~-------~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      .++.+......+...       .......+|++. .+.++++-...+.|+..+..+|+
T Consensus       282 wd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          282 WDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            777765433322211       111123456663 34444444444666666656664

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.21  E-value=0.46  Score=58.71  Aligned_cols=232  Identities=12%  Similarity=0.036  Sum_probs=130.7

Q ss_pred             eeeeeeccceEEeecCCCceEEEe--cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIV--NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~--~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      .++.+....|...++.........  .....+..++|.+....+ ++-...+.|...++..+.. ...+......+.+++
T Consensus       812 ~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vwd~~~~~~-~~~~~~h~~~v~~v~  889 (1249)
T 3sfz_A          812 KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLA-VIALSQYCVELWNIDSRLK-VADCRGHLSWVHGVM  889 (1249)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEE-EEECSSSCEEEEETTTTEE-EEEECCCSSCEEEEE
T ss_pred             EEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCce-eeecCCCccceEEEE
Confidence            445555666777776554433222  234567788898755544 4545677888888874432 233333445677888


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCCC------------------------------ceEEEE-------cCCCCCceeEE
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEGT------------------------------MRKVLV-------RSYLDEPRSLA  596 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG~------------------------------~~~~l~-------~~~l~~P~~ia  596 (734)
                      +.+.+..|+ +-...+.|.+.++...                              ....+.       .........++
T Consensus       890 ~spdg~~l~-s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  968 (1249)
T 3sfz_A          890 FSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCC  968 (1249)
T ss_dssp             ECTTSSEEE-EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEE
T ss_pred             ECCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEE
Confidence            886554444 4444567777664310                              000000       01123467888


Q ss_pred             EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC
Q psy8875         597 LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ  676 (734)
Q Consensus       597 vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~  676 (734)
                      +.|...+|.....  .+.|...++........+........+|++.+.+..|..+ ...+.|...++.......+.   .
T Consensus       969 ~sp~g~~l~~g~~--~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~---~ 1042 (1249)
T 3sfz_A          969 LSPHLEYVAFGDE--DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQTGDYVFLQ---A 1042 (1249)
T ss_dssp             ECTTSSEEEEEET--TSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEE-CSSSBEEEEETTTTEEECCB---C
T ss_pred             EcCCCCEEEEEcC--CCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCCCceEEEe---c
Confidence            8887777776663  3566666665444333333334456789998666655544 45678888887765443222   1


Q ss_pred             CCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         677 TLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       677 ~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      .......+++..+..+++-...+.|...+..+|+....+.
T Consensus      1043 ~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1043 HQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             CSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred             CCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence            2233445666444334444445667777777776665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.17  E-value=1.2  Score=51.01  Aligned_cols=78  Identities=10%  Similarity=0.028  Sum_probs=48.5

Q ss_pred             eEEEecCCCeEEEEeC-----------------------------------CCCeEEEEecCCCceEEEEcCCCCCCCCe
Q psy8875         638 GLTLDLVQRRLYWVDA-----------------------------------KLNEISSCDYNGGNRRLVLYSPQTLSHPF  682 (734)
Q Consensus       638 glavD~~~~~LYw~D~-----------------------------------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~  682 (734)
                      ++++|+.+++||+...                                   ..+.|..+++......--+... ....-.
T Consensus       385 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~~  463 (668)
T 1kv9_A          385 SMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-THWNGG  463 (668)
T ss_dssp             CCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SSCCCC
T ss_pred             cceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC-CCCcCc
Confidence            5899999999997421                                   1155777776543322111111 111123


Q ss_pred             EEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         683 SISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       683 gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .++..++.||+.+ ..+.|+.++..+|+.+..+..
T Consensus       464 ~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          464 TLSTAGNLVFQGT-AAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEeCCCEEEEEC-CcccchhhhhhcChhheEecC
Confidence            4566788899885 457899999989988776643

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.13  E-value=1.6  Score=45.42  Aligned_cols=207  Identities=7%  Similarity=-0.089  Sum_probs=115.7

Q ss_pred             cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC
Q psy8875         500 NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       500 ~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~  579 (734)
                      .....+.+|+|.+.. .+..+-...+.|...+...+..... +......+..+++.+. +.++.+-...+.|.+.++...
T Consensus        62 gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~~~~~~~-~~~~~~~v~~~~~sp~-g~~lasg~~d~~i~v~~~~~~  138 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFTTNKEHA-VTMPCTWVMACAYAPS-GCAIACGGLDNKCSVYPLTFD  138 (354)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEEEE-EECSSSCCCEEEECTT-SSEEEEESTTSEEEEEECCCC
T ss_pred             CCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCCCCcceE-EecCCCCEEEEEECCC-CCEEEEeeCCCCEEEEEEecc
Confidence            344567889998755 4455556678888887764443333 3333445678888865 455556566778887766422


Q ss_pred             -------ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC-CCeEEEE
Q psy8875         580 -------MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV-QRRLYWV  651 (734)
Q Consensus       580 -------~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~-~~~LYw~  651 (734)
                             ....+ .........+++.+...+|+-+..  .+.|...++........+.........+++.+. .+.++++
T Consensus       139 ~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~--D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~s  215 (354)
T 2pbi_B          139 KNENMAAKKKSV-AMHTNYLSACSFTNSDMQILTASG--DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVS  215 (354)
T ss_dssp             TTCCSGGGCEEE-EECSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred             ccccccccceee-eccCCcEEEEEEeCCCCEEEEEeC--CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence                   11222 223445678888876656655442  356666666543333333333344556777654 3455555


Q ss_pred             eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEE
Q psy8875         652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       652 D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      -...+.|...++........+..  ......+|++. .+.++++-...+.|...+..+++.+.+
T Consensus       216 gs~Dg~v~~wd~~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          216 GGCDKKAMVWDMRSGQCVQAFET--HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             EETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EeCCCeEEEEECCCCcEEEEecC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            55667888888765544333321  22334566663 344445544456666666555544433

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.13  E-value=0.28  Score=52.45  Aligned_cols=211  Identities=7%  Similarity=0.014  Sum_probs=113.2

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc----------eEEEEeCCC------------CCccceeeeccCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE----------RTVVIEEDK------------TIADGLAVDWIYS  559 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~----------~~~~~~~~~------------~~p~glAvD~~~~  559 (734)
                      ...+.+|+|++....| .+-...+.|...++..+..          ....+....            ..+..|++.+...
T Consensus        28 ~~~V~~v~~s~~g~~l-a~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           28 ADIISTVEFNHSGELL-ATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGSEEEEEECSSSSEE-EEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             cCcEEEEEECCCCCEE-EEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            4567888888754444 4444567777777664331          112222222            3466777776542


Q ss_pred             -cEEEEeCCCCeEEEEeCCCCce----------------------------------------EEEEcCCCCCceeEEEe
Q psy8875         560 -HIYWTDAHKNTIELANFEGTMR----------------------------------------KVLVRSYLDEPRSLALN  598 (734)
Q Consensus       560 -~lY~td~~~~~I~~~~ldG~~~----------------------------------------~~l~~~~l~~P~~iavD  598 (734)
                       .++++-...+.|.+.++.....                                        +++..........|++.
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  186 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN  186 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence             4555555567787777653221                                        12223445567899999


Q ss_pred             CCCCeEEEEecCCCceEEEeccCC-CceEEEE-------EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCce--
Q psy8875         599 PIDGWMYWSDWGQNAKIERAGMDG-SHRNMVI-------VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNR--  668 (734)
Q Consensus       599 ~~~g~LYwtd~~~~~~I~~~~ldG-~~~~~lv-------~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~--  668 (734)
                      |. +.++.+- . .+.|...++.. .....++       ...-.....|++.+.+..++.+-...+.|...++.....  
T Consensus       187 ~~-~~~l~s~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          187 SD-YETYLSA-D-DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             TT-SSEEEEE-C-SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             CC-CCEEEEe-C-CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            85 4444454 2 56777777762 2222221       112234678899876634555555567888888765543  


Q ss_pred             --EEEEcCCCCC----------CCCeEEEEE-CCEEEEEeCCCCceEEEeccC-CCceEEEec
Q psy8875         669 --RLVLYSPQTL----------SHPFSISTF-EDWLYWSDWQQKAIYKANKFT-GDNLTAITG  717 (734)
Q Consensus       669 --~~i~~~~~~~----------~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~-G~~~~~l~~  717 (734)
                        ...+......          ....+|++. .+.++.+-.. +.|...+..+ ++.+..+..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~  325 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQV  325 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEES
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeec
Confidence              2233221100          134567773 3334444333 7777777665 665555543

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=96.09  E-value=0.002  Score=47.84  Aligned_cols=41  Identities=10%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             cccCCCCC-CCcccCCCcc-----cCCCCCccccCCCCCccCCCccc
Q psy8875         177 CAAVNGHC-SHLCLPAPQI-----NAHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       177 C~~~~~~C-~~~C~~~~~~-----~~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      |.....+| +.+|+|+++|     .+....|+|.|++||.|..|+..
T Consensus         4 c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE~~   50 (55)
T 3u7u_G            4 HLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQNY   50 (55)
T ss_dssp             CEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSCEE
T ss_pred             CcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcCcc
Confidence            33344556 5799999999     56778899999999999988754

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=96.08  E-value=0.0029  Score=46.97  Aligned_cols=37  Identities=22%  Similarity=0.475  Sum_probs=27.6

Q ss_pred             cccccccCCCCCcCcc-----ccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCLHKC-----VDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C-----~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ++|||..++..-...|     ++..++|+|.|++||    .|+.|+
T Consensus         7 ~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~----~G~~CE   48 (55)
T 3u7u_G            7 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEF----TGDRCQ   48 (55)
T ss_dssp             ECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTE----ESTTSC
T ss_pred             cCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCC----cCCCcC
Confidence            6788887665556688     567789999999999    577775

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=96.07  E-value=0.88  Score=46.66  Aligned_cols=132  Identities=9%  Similarity=0.047  Sum_probs=73.5

Q ss_pred             cceEEeecCC--Cce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceee--ecc
Q psy8875         483 HDIRKISLDH--HEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAV--DWI  557 (734)
Q Consensus       483 ~~I~~i~l~~--~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAv--D~~  557 (734)
                      ..|+..++..  ... ..+......+.+|+|.+....|+ +-...+.|...++..+.... +. .....+..|++  . .
T Consensus        64 g~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~dg~v~iwd~~~~~~~~-~~-~~~~~v~~~~~~~~-~  139 (368)
T 3mmy_A           64 NDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSSNQAIQ-IA-QHDAPVKTIHWIKA-P  139 (368)
T ss_dssp             SEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEE-EE-ECSSCEEEEEEEEC-S
T ss_pred             CcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE-EEcCCCcEEEEEcCCCCcee-ec-cccCceEEEEEEeC-C
Confidence            4455555553  232 23333456788999998555555 44567888888887543332 22 23345677777  4 3


Q ss_pred             CCcEEEEeCCCCeEEEEeCCCCc-eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         558 YSHIYWTDAHKNTIELANFEGTM-RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       558 ~~~lY~td~~~~~I~~~~ldG~~-~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      .++++++-...+.|.+.++.... ...+...  .  ..+++++....++.+..  ...|...+++...
T Consensus       140 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~  201 (368)
T 3mmy_A          140 NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP--E--RCYCADVIYPMAVVATA--ERGLIVYQLENQP  201 (368)
T ss_dssp             SCEEEEEEETTSEEEEECSSCSSCSEEEECS--S--CEEEEEEETTEEEEEEG--GGCEEEEECSSSC
T ss_pred             CCCEEEEccCCCcEEEEECCCCcEEEEEecC--C--CceEEEecCCeeEEEeC--CCcEEEEEecccc
Confidence            45555565567889999886443 3333211  1  33444444556665553  2455555555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.96  E-value=1.8  Score=44.55  Aligned_cols=159  Identities=6%  Similarity=-0.031  Sum_probs=93.4

Q ss_pred             cceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         503 KSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       503 ~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..+..|++++. .+.++.+-...+.|...++..+....+........+..+++.+. +.++.+-...+.|.+.++.....
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~  204 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQ  204 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTS
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCC
Confidence            45788999871 34455555577888888887554422221222234678888864 56666666678999999875544


Q ss_pred             E-EEEcC-CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCc---eeEEEecCCCeEEEEeCC
Q psy8875         582 K-VLVRS-YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWP---NGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       582 ~-~l~~~-~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P---~glavD~~~~~LYw~D~~  654 (734)
                      . ..+.. .......|++.|...+|..+. .  ..|...++........+..  .-..+   ..+++++.+.+|..+...
T Consensus       205 ~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~  281 (343)
T 3lrv_A          205 ASSRFPVDEEAKIKEVKFADNGYWMVVEC-D--QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE  281 (343)
T ss_dssp             CCEECCCCTTSCEEEEEECTTSSEEEEEE-S--SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT
T ss_pred             CccEEeccCCCCEEEEEEeCCCCEEEEEe-C--CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCC
Confidence            3 23333 456788999998766666555 2  2666666644322110100  00012   349999777777765554


Q ss_pred             CCeEEEEecCC
Q psy8875         655 LNEISSCDYNG  665 (734)
Q Consensus       655 ~~~I~~~~~dG  665 (734)
                      .+.|...+++.
T Consensus       282 d~~i~v~~~~~  292 (343)
T 3lrv_A          282 SNSLTIYKFDK  292 (343)
T ss_dssp             TTEEEEEEECT
T ss_pred             CCcEEEEEEcc
Confidence            56676666643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=95.95  E-value=2.2  Score=48.10  Aligned_cols=160  Identities=11%  Similarity=-0.007  Sum_probs=93.4

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCC---CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISE---KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~---~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+.+|+|++....|..+....   +.|+..+  .+..... +......+..+++.+....++.+-...+.|.+.++.
T Consensus       102 ~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~-l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~  178 (611)
T 1nr0_A          102 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGN-LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  178 (611)
T ss_dssp             SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBC-CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcce-ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC
Confidence            345678999998777776654332   2344433  2322211 222334567788887666667777777888888876


Q ss_pred             CCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEE------cCCCCceeEEEecCCCeEEE
Q psy8875         578 GTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIV------SDIKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       578 G~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~------~~l~~P~glavD~~~~~LYw  650 (734)
                      .......+.........+++.|. |.++.+-. ..+.|...++. |....++..      .......+|++.+.+.+|. 
T Consensus       179 ~~~~~~~l~~H~~~V~~v~fspd-g~~las~s-~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~-  255 (611)
T 1nr0_A          179 PFKFKSTFGEHTKFVHSVRYNPD-GSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA-  255 (611)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTT-SSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE-
T ss_pred             CCeEeeeeccccCceEEEEECCC-CCEEEEEE-CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE-
Confidence            54433344455567889999986 44554442 23566665543 333222211      1223467889986655554 


Q ss_pred             EeCCCCeEEEEecCCC
Q psy8875         651 VDAKLNEISSCDYNGG  666 (734)
Q Consensus       651 ~D~~~~~I~~~~~dG~  666 (734)
                      +-...+.|...++...
T Consensus       256 s~s~D~~v~lWd~~~~  271 (611)
T 1nr0_A          256 SASADKTIKIWNVATL  271 (611)
T ss_dssp             EEETTSEEEEEETTTT
T ss_pred             EEeCCCeEEEEeCCCC
Confidence            4445677888887643

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=95.92  E-value=0.0062  Score=47.97  Aligned_cols=38  Identities=39%  Similarity=0.787  Sum_probs=29.1

Q ss_pred             ccccCcCC-CCCcc--cceeccCCceEEec-CCCeeeCCCCC
Q psy8875         428 IDIDECET-PGSCS--QICLNEKGGFKCEC-VAGYIKDPHHP  465 (734)
Q Consensus       428 ~~~~eC~~-~~~C~--~~C~n~~g~~~C~C-~~gy~~~~~~~  465 (734)
                      +|||||.. ...|.  ++|+|+.|+|.|.+ ..||.++.++.
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~~~~   42 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGE   42 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCCSCS
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCcccccccCC
Confidence            37899975 36785  48999999999985 46898876543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=95.91  E-value=1.4  Score=47.06  Aligned_cols=209  Identities=9%  Similarity=-0.064  Sum_probs=112.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCC---CC-ce-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDE---GS-ER-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF  576 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~---g~-~~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l  576 (734)
                      ...+.+|+|.+..+.++++-...+.|...++..   +. .. ..... ....+..|++.+. +.++++-...+.|.+.++
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~-~~~l~s~s~dg~i~vwd~  140 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPN-FDAFAVSSKDGQIIVLKV  140 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTT-SSEEEEEETTSEEEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCC-CCEEEEEeCCCEEEEEEe
Confidence            457789999974455666666778888777653   22 11 12222 3345778888864 444555555688888877


Q ss_pred             ----CCCceEEEEcC-----------CCCCceeEE--EeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc--CCCCce
Q psy8875         577 ----EGTMRKVLVRS-----------YLDEPRSLA--LNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS--DIKWPN  637 (734)
Q Consensus       577 ----dG~~~~~l~~~-----------~l~~P~~ia--vD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~l~~P~  637 (734)
                          .|.....+...           .......++  ..+...+|+...  ..+.|...++........+..  ......
T Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (437)
T 3gre_A          141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVS  218 (437)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEE
T ss_pred             ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceE
Confidence                34333222111           112222232  223233333333  346777777755444333333  345678


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-----CCEEEEEeCCCCceEEEeccCCCce
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-----EDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-----~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      .|++++.+..|+.+. ..+.|...++........+... .......|++.     .+.++++-...+.|...+..+++.+
T Consensus       219 ~~~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  296 (437)
T 3gre_A          219 SICIDEECCVLILGT-TRGIIDIWDIRFNVLIRSWSFG-DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQ  296 (437)
T ss_dssp             EEEECTTSCEEEEEE-TTSCEEEEETTTTEEEEEEBCT-TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEE
T ss_pred             EEEECCCCCEEEEEc-CCCeEEEEEcCCccEEEEEecC-CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEE
Confidence            899986655555444 4577888887654332222110 01112344332     2446666666677877787777776


Q ss_pred             EEEe
Q psy8875         713 TAIT  716 (734)
Q Consensus       713 ~~l~  716 (734)
                      ..+.
T Consensus       297 ~~~~  300 (437)
T 3gre_A          297 YAFI  300 (437)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.89  E-value=0.098  Score=54.83  Aligned_cols=156  Identities=5%  Similarity=-0.112  Sum_probs=81.5

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-ceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc--
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-ERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM--  580 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~--  580 (734)
                      .+.+++|.+....| .+-...+.|+..++..+. .....+......+..|++.+.+..|+.+ ...+.|.+.++....  
T Consensus        13 ~v~~~~~s~~g~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           13 PSYEHAFNSQRTEF-VTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTC-SQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CCSCCEECSSSSEE-ECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEE-ETTSSEEEC------CC
T ss_pred             cEEEEEECCCCCEE-EEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCce
Confidence            45567777644433 333345666666665331 1111122223456678887665555544 446788888886544  


Q ss_pred             -eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce---EEEEEc-CCCCceeEEEecCCCeEEEEeCCC
Q psy8875         581 -RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR---NMVIVS-DIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       581 -~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~---~~lv~~-~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                       ....+.........+++.|...+|+....  .+.|...+++....   ...+.. .-.....|++.+.+..|+.+. ..
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~d  167 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-AD  167 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-SS
T ss_pred             eeeeEecccCCceEEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEe-CC
Confidence             22333344556789999986666666553  35677766665431   222222 345567889987665555544 34


Q ss_pred             CeEEEEecC
Q psy8875         656 NEISSCDYN  664 (734)
Q Consensus       656 ~~I~~~~~d  664 (734)
                      +.|...++.
T Consensus       168 ~~i~iwd~~  176 (377)
T 3dwl_C          168 RKAYVLSAY  176 (377)
T ss_dssp             SCEEEEEEC
T ss_pred             CEEEEEEEE
Confidence            666666653

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.87  E-value=0.0044  Score=57.48  Aligned_cols=51  Identities=29%  Similarity=0.647  Sum_probs=40.7

Q ss_pred             CCcEecCCCCccccccCcCCC--CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         416 EGYKLSSNRHTCIDIDECETP--GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       416 ~G~~l~~~~~~C~~~~eC~~~--~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      .||++.   ..+.+++||..+  ..|++.|.|+.++|.|.|.+||.+..++++ |++
T Consensus       106 ~GF~~~---y~~~d~~eC~~~~~~~C~~~C~n~~g~~~C~C~~Gy~l~~~~~~-C~~  158 (159)
T 1nzi_A          106 TGFAAY---YVATDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKN-CGV  158 (159)
T ss_dssp             CEEEEE---EEEEECCTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSC-EEC
T ss_pred             ccceee---eecccCcccCCCCCCCCCCcccCcCCCEEEecCCCcEECCCCCc-ccc
Confidence            566553   356788999764  579999999999999999999999887666 764

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=95.84  E-value=0.61  Score=54.46  Aligned_cols=190  Identities=9%  Similarity=0.037  Sum_probs=111.7

Q ss_pred             cCCeEEEEEeCCC----cEEEEec---CCCC--ceEEEEeCC-------CCCccceeee-ccCCcEEEEeCCC----CeE
Q psy8875         513 RTGMIFWSDISEK----KIYKAPI---DEGS--ERTVVIEED-------KTIADGLAVD-WIYSHIYWTDAHK----NTI  571 (734)
Q Consensus       513 ~~~~lyw~d~~~~----~I~~~~l---~~g~--~~~~~~~~~-------~~~p~glAvD-~~~~~lY~td~~~----~~I  571 (734)
                      ..+++||+-...+    .++|...   + +.  ..++++..+       .....++++. +.++.|.|+....    .+|
T Consensus       125 ~g~~~yy~~~~~g~~~~vl~r~~~~~~~-~~~~~~~vlld~n~~a~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l  203 (751)
T 2xe4_A          125 YGKYRYYTREVKGKPYKIYCRVFTDKEP-GDVAAEEVIIDVNQVAEGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTI  203 (751)
T ss_dssp             ETTEEEEEEECTTCCSCEEEEEETTSCT-TCTTTCEEEEEHHHHTTTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEE
T ss_pred             ECCEEEEEEECCCCceeEEEEEcCCCCC-CCCcCCEEEechhHhccCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEE
Confidence            4788898865433    3667765   4 43  456666532       1134456777 7777777765432    249


Q ss_pred             EEEeCCCC-ceEEEEcCCCC-CceeEEEeCCCCeEEEEecCC---CceEEEeccCCCce--EEEEEc-CCCCceeEEEec
Q psy8875         572 ELANFEGT-MRKVLVRSYLD-EPRSLALNPIDGWMYWSDWGQ---NAKIERAGMDGSHR--NMVIVS-DIKWPNGLTLDL  643 (734)
Q Consensus       572 ~~~~ldG~-~~~~l~~~~l~-~P~~iavD~~~g~LYwtd~~~---~~~I~~~~ldG~~~--~~lv~~-~l~~P~glavD~  643 (734)
                      ++.++++. ..   +...+. ...+++..|....||++....   ..+|++.++++...  +.+... .-.+-.++++.+
T Consensus       204 ~v~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp  280 (751)
T 2xe4_A          204 EFKRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA  280 (751)
T ss_dssp             EEEETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT
T ss_pred             EEEECCCCCEe---CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC
Confidence            99999876 41   111111 124677877777888876431   24799999977542  333332 222335677888


Q ss_pred             CCCeEEEEeC--CCCeEEEEecCCCc--e--EEEEcCCCCCCCCeEEE-EECCEEEEEeC----CCCceEEEeccC
Q psy8875         644 VQRRLYWVDA--KLNEISSCDYNGGN--R--RLVLYSPQTLSHPFSIS-TFEDWLYWSDW----QQKAIYKANKFT  708 (734)
Q Consensus       644 ~~~~LYw~D~--~~~~I~~~~~dG~~--~--~~i~~~~~~~~~P~gl~-v~~~~lywtd~----~~~~v~~~~~~~  708 (734)
                      .+.+|+|+..  ....|+.+++++..  .  +.+...  ....-+.+. ..+++|||...    .+.+|++++..+
T Consensus       281 Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          281 DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR--EKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC--CTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC--CCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            8888888753  34579999988652  3  333321  112224444 34778777643    345788887654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.87  Score=54.35  Aligned_cols=200  Identities=7%  Similarity=0.009  Sum_probs=116.9

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-  581 (734)
                      ..+.+|+|++....| .+-...+.|+..+..++  ...........+..|++.+  +.+.++-...+.|.+.++..... 
T Consensus        18 ~~V~~lafspdg~~l-Asgs~Dg~I~lw~~~~~--~~~~~~~~~~~V~~l~fsp--g~~L~S~s~D~~v~lWd~~~~~~~   92 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLL-AIATVTGEVHIYGQQQV--EVVIKLEDRSAIKEMRFVK--GIYLVVINAKDTVYVLSLYSQKVL   92 (902)
T ss_dssp             SCEEEEEEETTTTEE-EEEETTSEEEEECSTTC--EEEEECSSCCCEEEEEEET--TTEEEEEETTCEEEEEETTTCSEE
T ss_pred             CCcEEEEECCCCCEE-EEEeCCCEEEEEeCCCc--EEEEEcCCCCCEEEEEEcC--CCEEEEEECcCeEEEEECCCCcEE
Confidence            467889999865544 44456677887776532  2222222234567888887  44444445578999999865443 


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-----------cCCCCceeEEEecCCCeEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-----------SDIKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-----------~~l~~P~glavD~~~~~LYw  650 (734)
                      ..+.  .-.....++++|...+|+....  .+.|...++++.....+..           ........|++.+.++.+..
T Consensus        93 ~~~~--~~~~V~~v~~sp~g~~l~sgs~--dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~  168 (902)
T 2oaj_A           93 TTVF--VPGKITSIDTDASLDWMLIGLQ--NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL  168 (902)
T ss_dssp             EEEE--CSSCEEEEECCTTCSEEEEEET--TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEE
T ss_pred             EEEc--CCCCEEEEEECCCCCEEEEEcC--CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEE
Confidence            3332  2246789999998888887763  4677777776654321111           11234578888876555555


Q ss_pred             EeCCCCeEEEEecCCCceEEEEcCC----------------CCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCce
Q psy8875         651 VDAKLNEISSCDYNGGNRRLVLYSP----------------QTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       651 ~D~~~~~I~~~~~dG~~~~~i~~~~----------------~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      +-...+.| ..++........+...                .......+|++. .+.++.+-...+.|...+..+|+.+
T Consensus       169 ~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          169 ISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             EECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             EEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            55566778 8787665433333211                001224566663 3455555555566766666666543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.74  E-value=1.9  Score=43.31  Aligned_cols=204  Identities=9%  Similarity=-0.033  Sum_probs=105.8

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..+..++|++... +..+-...+.|+..++.++.. ....+..-...+..|++.+. .++++.+-...+.|.+.++....
T Consensus        10 ~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             CceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            4566788887544 444555677777777763221 11222222334456665432 36677777778899999886542


Q ss_pred             --eEEEEcCCCCCceeEEEeCCC-CeEEEEecCCCceEEEeccCCC--ceEEEEEcCCCCceeEEEecCC----------
Q psy8875         581 --RKVLVRSYLDEPRSLALNPID-GWMYWSDWGQNAKIERAGMDGS--HRNMVIVSDIKWPNGLTLDLVQ----------  645 (734)
Q Consensus       581 --~~~l~~~~l~~P~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG~--~~~~lv~~~l~~P~glavD~~~----------  645 (734)
                        ....+.........+++.|.. +.++.+-. ..+.|...++...  ....++.......+.+++.+..          
T Consensus        89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~  167 (297)
T 2pm7_B           89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT  167 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred             eEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence              222233344567889998862 44444432 2356666655432  1122333333345667776542          


Q ss_pred             --CeEEEEeCCCCeEEEEecCCCc-eE-EEEcCCCCCCCCeEEEEEC----CEEEEEeCCCCceEEEeccC
Q psy8875         646 --RRLYWVDAKLNEISSCDYNGGN-RR-LVLYSPQTLSHPFSISTFE----DWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       646 --~~LYw~D~~~~~I~~~~~dG~~-~~-~i~~~~~~~~~P~gl~v~~----~~lywtd~~~~~v~~~~~~~  708 (734)
                        ++++++-...+.|...++.... .. .+..-........+|++..    +.++.+-...+.|...+..+
T Consensus       168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence              3455555555667776665433 11 1111111223345677743    35555555555555554433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.72  E-value=1.9  Score=48.67  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=28.7

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEeccc-ccCCCcc
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVH-QTHEPLN  726 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~-~l~~P~~  726 (734)
                      |+..++.||+... .+.|+.++..+|+.+....... ....|+.
T Consensus       480 ~~tagg~vf~gt~-dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~  522 (599)
T 1w6s_A          480 MATAGDLVFYGTL-DGYLKARDSDTGDLLWKFKIPSGAIGYPMT  522 (599)
T ss_dssp             EEETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             eEecCCEEEEECC-CCeEEEEECCCCCEEEEeeCCCCcEeccEE
Confidence            5667888988754 4788999999999877664322 2334544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.62  E-value=2.7  Score=48.22  Aligned_cols=195  Identities=11%  Similarity=0.075  Sum_probs=97.4

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-----------CCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-----------TIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR  581 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-----------~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~  581 (734)
                      .++||+... .+.|+.+++..|... .......           ....+++++  .++||+... .++|...+. +|+.+
T Consensus        77 ~g~vyv~~~-~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~v~v~~~-dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           77 DGIMYVSAS-WSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAW-DGRLIALDAATGKEV  151 (677)
T ss_dssp             TTEEEEECG-GGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CCEEEEECC-CCeEEEEECCCCcEE-EEEcCCCCccccccccccCCCCCceEE--CCEEEEEcC-CCEEEEEECCCCCEE
Confidence            566666643 355666666544321 1111110           112467775  678888754 467888777 45544


Q ss_pred             EEEEcC-C----CCCceeEEEeCCCCeEEEEecC----CCceEEEecc-CCCceEEEEEcC--C--------------CC
Q psy8875         582 KVLVRS-Y----LDEPRSLALNPIDGWMYWSDWG----QNAKIERAGM-DGSHRNMVIVSD--I--------------KW  635 (734)
Q Consensus       582 ~~l~~~-~----l~~P~~iavD~~~g~LYwtd~~----~~~~I~~~~l-dG~~~~~lv~~~--l--------------~~  635 (734)
                      -.+-.. .    .......+|+  .+.||+...+    ..+.|...+. +|..+-.+-...  .              .|
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            333221 1    0111122232  5777776542    1356666665 344332221110  0              11


Q ss_pred             c---------------eeEEEecCCCeEEEEeCCC------------------CeEEEEecCCCceEEEEcCCC------
Q psy8875         636 P---------------NGLTLDLVQRRLYWVDAKL------------------NEISSCDYNGGNRRLVLYSPQ------  676 (734)
Q Consensus       636 P---------------~glavD~~~~~LYw~D~~~------------------~~I~~~~~dG~~~~~i~~~~~------  676 (734)
                      +               ..+++|+..++||+.....                  ..|..++.+....+-.++...      
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~  309 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccc
Confidence            1               3578999999999986431                  258888876544433332111      


Q ss_pred             -CCCCCeEEEE-ECC---EEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         677 -TLSHPFSIST-FED---WLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       677 -~~~~P~gl~v-~~~---~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                       ....|.-+.+ ..+   .+++.-..++.|+.++..+|+.+..+
T Consensus       310 ~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~  353 (677)
T 1kb0_A          310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK  353 (677)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred             ccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence             1233543332 123   33333334567777777777765544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=95.52  E-value=4.2  Score=45.61  Aligned_cols=100  Identities=12%  Similarity=0.063  Sum_probs=54.4

Q ss_pred             eeEEEeCCCCeEEEEecC-----------------------------------CCceEEEeccC-CCceEEEEEcCCCCc
Q psy8875         593 RSLALNPIDGWMYWSDWG-----------------------------------QNAKIERAGMD-GSHRNMVIVSDIKWP  636 (734)
Q Consensus       593 ~~iavD~~~g~LYwtd~~-----------------------------------~~~~I~~~~ld-G~~~~~lv~~~l~~P  636 (734)
                      .++|+||.+++||+....                                   ..+.|...++. |+.+-.+-..  ..+
T Consensus       389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~  466 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAA  466 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCC
T ss_pred             CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCc
Confidence            468999999999997521                                   12455555553 3322222111  112


Q ss_pred             eeEEEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875         637 NGLTLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~  696 (734)
                      .+.++...+++||+.. ..+.|..++.. |+.+-.+.........|... ..++++|++..
T Consensus       467 ~~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~-~~~G~~yv~~~  525 (571)
T 2ad6_A          467 WGGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFKMPSGGIGSPMTY-SFKGKQYIGSM  525 (571)
T ss_dssp             CSBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEE
T ss_pred             cceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEeCCCCcEeeeEEE-EECCEEEEEEE
Confidence            3333333578888864 45788888854 44444443332233445432 26788888653

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.50  E-value=2.1  Score=43.97  Aligned_cols=116  Identities=6%  Similarity=-0.062  Sum_probs=71.4

Q ss_pred             CCccceeeec-cCCcEEEEeCCCCeEEEEeCCCCceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         547 TIADGLAVDW-IYSHIYWTDAHKNTIELANFEGTMRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       547 ~~p~glAvD~-~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      ..+..|++.+ ..++++++-...+.|.+.++.......+.. ........+++.|. +.++.+- +..+.|...++....
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg-~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALY-SPDGILDVYNLSSPD  203 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEE-CTTSCEEEEESSCTT
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEE-cCCCEEEEEECCCCC
Confidence            3466788876 145566666667899999987665544432 22335789999985 4454443 234677777775443


Q ss_pred             eE-EEEEc-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         625 RN-MVIVS-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       625 ~~-~lv~~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .. ..+.. .......|++.+.+..|..+.  .+.|...++...
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~  245 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKD  245 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSS
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCC
Confidence            32 22222 345567899987776776666  338888887654

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=95.30  E-value=0.016  Score=64.89  Aligned_cols=15  Identities=13%  Similarity=0.445  Sum_probs=11.0

Q ss_pred             CCCCCCCCCCcCCCC
Q psy8875         117 DNPDCSDGSDEKSCK  131 (734)
Q Consensus       117 g~~dC~dg~de~~C~  131 (734)
                      +...|..|+.+.+|+
T Consensus       279 g~C~C~~G~~G~~Ce  293 (525)
T 4aqs_A          279 GHCMCRHNTKGLNCE  293 (525)
T ss_dssp             CEECCCTTEESSSSC
T ss_pred             ccccCcCCCcCCCCc
Confidence            445788888888884

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.13  E-value=2.6  Score=44.54  Aligned_cols=229  Identities=12%  Similarity=0.042  Sum_probs=121.2

Q ss_pred             eeeeeeccceEEeecCC--CceEEEe--cCCcceEEEeeecc-CCeEEEEEeCCC----cEEEEecCCCCceEEEEeC-C
Q psy8875         476 SLLFARKHDIRKISLDH--HEMTAIV--NSTKSATAIDFVFR-TGMIFWSDISEK----KIYKAPIDEGSERTVVIEE-D  545 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~--~~~~~l~--~~~~~~~~i~~d~~-~~~lyw~d~~~~----~I~~~~l~~g~~~~~~~~~-~  545 (734)
                      .|++.....+.++..+.  ...+.+.  .....+.+|++|+. .+.||..-. .+    .|++.. ++|..-+.+... .
T Consensus        24 ~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~-D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           24 MLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSD-DGGGNWTEATRPPA  101 (394)
T ss_dssp             EEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEES-STTSCCEECSBCCC
T ss_pred             EEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEec-CCCCCccEEEeC-CCCCCceECCcccc
Confidence            45555555566665532  4444431  23346788999973 456776543 33    577754 444432222110 1


Q ss_pred             C------------CCccceeeecc--CCcEEEEeCCCCeEEEEeCCCCceEEEEcC------------------CCCCce
Q psy8875         546 K------------TIADGLAVDWI--YSHIYWTDAHKNTIELANFEGTMRKVLVRS------------------YLDEPR  593 (734)
Q Consensus       546 ~------------~~p~glAvD~~--~~~lY~td~~~~~I~~~~ldG~~~~~l~~~------------------~l~~P~  593 (734)
                      +            ....+|++|+.  .+.||..-. .+.|++..-.|..-+.+...                  ......
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~  180 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH  180 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence            1            12346888864  577777543 36788876666554433210                  011235


Q ss_pred             eEEEeCC-CCeEEEEecCCCceEEEeccCCCceEEEEEcCC-------------CCceeEEEecCC-CeEEEEeCCCCeE
Q psy8875         594 SLALNPI-DGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI-------------KWPNGLTLDLVQ-RRLYWVDAKLNEI  658 (734)
Q Consensus       594 ~iavD~~-~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l-------------~~P~glavD~~~-~~LYw~D~~~~~I  658 (734)
                      .|++||. .+.||+...  ...|++..-.|..-+.+. ..+             .....|++|+.+ +.||+..  .+.|
T Consensus       181 ~i~~d~~~~~~l~vg~~--~ggl~~s~DgG~tW~~~~-~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl  255 (394)
T 3b7f_A          181 SILVDPRDPKHLYIGMS--SGGVFESTDAGTDWKPLN-RGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGI  255 (394)
T ss_dssp             EEEECTTCTTCEEEEEE--TBEEEEESSTTSSCEECC-TTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEE
T ss_pred             EEEECCCCCCEEEEEEC--CCCEEEECCCCCCceECC-CCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeE
Confidence            8999985 467888753  246888765565443332 111             124678888753 6777765  3467


Q ss_pred             EEEecCCCceEEEEcCCCCCCC-----CeEEEEE---CCEEEEEeC------------CCCceEEEeccCCCceEEEe
Q psy8875         659 SSCDYNGGNRRLVLYSPQTLSH-----PFSISTF---EDWLYWSDW------------QQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~~~~~~-----P~gl~v~---~~~lywtd~------------~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++.+-.|..-+.+..   .+..     .+.|++.   .+.||+.-.            ....|++- ...|+..+.+.
T Consensus       256 ~~s~D~G~tW~~~~~---~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S-~DgG~tW~~~~  329 (394)
T 3b7f_A          256 YRMDRREGVWKRIGD---AMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVT-RDAGESWQRQD  329 (394)
T ss_dssp             EEEETTTTEEECGGG---GSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEE-SSTTSCCEEEC
T ss_pred             EEeCCCCCcceECCC---CCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEE-CCCCCCceECC
Confidence            776654544333321   1222     2456663   467887631            12355554 34566666554

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=94.98  E-value=0.014  Score=42.92  Aligned_cols=37  Identities=30%  Similarity=0.776  Sum_probs=26.4

Q ss_pred             ccccccC-CCCCc--Cccc--cCCCcceeecCCCcEecCCCCcccc
Q psy8875         389 VDECAKD-NGGCL--HKCV--DLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       389 ~~eC~~~-~~~C~--~~C~--~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      +++|... ...|.  ..|+  +..++|+|.|++||    .|..|+.
T Consensus         3 i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~----~G~~Ce~   44 (53)
T 1egf_A            3 YPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGY----SGDRCQT   44 (53)
T ss_dssp             ECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTC----CSSSSCC
T ss_pred             cccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCC----cCCcCCc
Confidence            4566543 12454  4798  78899999999999    5777853

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=94.95  E-value=0.009  Score=40.81  Aligned_cols=31  Identities=23%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDL  215 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~  215 (734)
                      +++|.|+.+|.+..++|+|.|++||.|..++
T Consensus         8 ~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             TCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            3567777777766688999999999987554

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=94.90  E-value=0.012  Score=60.09  Aligned_cols=42  Identities=26%  Similarity=0.775  Sum_probs=35.2

Q ss_pred             cccCcCC--CCCcccceeccCCceEEecCCCeeeCCCCCcccccc
Q psy8875         429 DIDECET--PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA  471 (734)
Q Consensus       429 ~~~eC~~--~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~  471 (734)
                      +.|||..  ++.|+|.|.|+.++|.|.|++||.+..+.++ |.+.
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~s-C~p~   44 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQ-CVPH   44 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSC-EEEC
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCc-cccc
Confidence            4689975  4899999999999999999999999887766 8764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.90  E-value=3.9  Score=41.77  Aligned_cols=224  Identities=9%  Similarity=0.037  Sum_probs=107.5

Q ss_pred             ccceEEeecCCCce--EEEe-c--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC-----c-eEEEEeCCCCCcc
Q psy8875         482 KHDIRKISLDHHEM--TAIV-N--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS-----E-RTVVIEEDKTIAD  550 (734)
Q Consensus       482 ~~~I~~i~l~~~~~--~~l~-~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~-----~-~~~~~~~~~~~p~  550 (734)
                      +..|+..++.....  ...+ .  ....+.+|+|.+... +..+-...+.|+..++....     . ....+......+.
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~  111 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK  111 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence            34566666654322  2222 1  234578999998654 44455566777776664211     1 1112222334567


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCC-C-Cc--eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc--
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFE-G-TM--RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH--  624 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ld-G-~~--~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~--  624 (734)
                      .|++.+.+ +++.+-...+.|.+.++. + ..  ....+.........|++.|...+|.-...  .+.|...++....  
T Consensus       112 ~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D~~i~iW~~~~~~~~  188 (330)
T 2hes_X          112 GVAWSNDG-YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY--DDTVRIWKDYDDDWE  188 (330)
T ss_dssp             EEEECTTS-CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEE
T ss_pred             EEEECCCC-CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCee
Confidence            88888654 455555557889888884 2 21  12233344556789999986555544443  2444333332221  


Q ss_pred             eEEEEEcCCCCceeEEEecCC-CeEEEEeCCCCeEEEEecCCC-----ce-EEEEcCCC-CCCCCeEEEEECCEEEEEeC
Q psy8875         625 RNMVIVSDIKWPNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGG-----NR-RLVLYSPQ-TLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~-----~~-~~i~~~~~-~~~~P~gl~v~~~~lywtd~  696 (734)
                      ....+.........+++.+.. +.+..+-...+.|...++.+.     .. ..+..... .......|++..+.++++-.
T Consensus       189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~  268 (330)
T 2hes_X          189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG  268 (330)
T ss_dssp             EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEe
Confidence            112222333445677887653 333344344455555554322     11 11111111 12234566664444444444


Q ss_pred             CCCceEEEeccCC
Q psy8875         697 QQKAIYKANKFTG  709 (734)
Q Consensus       697 ~~~~v~~~~~~~G  709 (734)
                      ..+.|...+..+|
T Consensus       269 ~dg~v~iw~~~~~  281 (330)
T 2hes_X          269 ADGVLAVYEEVDG  281 (330)
T ss_dssp             TTSCEEEEEEETT
T ss_pred             CCCEEEEEEcCCC
Confidence            4455555554444

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=94.82  E-value=0.36  Score=52.27  Aligned_cols=122  Identities=7%  Similarity=-0.033  Sum_probs=76.1

Q ss_pred             CccceeeeccCCcEEE---EeCCCCeEEEEeCCCC------ce-----EEEEcCCCCCceeEEEeCCCCeEEEEecCCCc
Q psy8875         548 IADGLAVDWIYSHIYW---TDAHKNTIELANFEGT------MR-----KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA  613 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~---td~~~~~I~~~~ldG~------~~-----~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~  613 (734)
                      .+..|++.+.++.|++   +-...+.|.+.++...      ..     ..++......+.+|++.|..+.++.+-.. .+
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~-Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA-DG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET-TS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC-CC
Confidence            4678888877777776   5555678888876432      11     11122234568899999986666666532 46


Q ss_pred             eEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEE
Q psy8875         614 KIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLV  671 (734)
Q Consensus       614 ~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i  671 (734)
                      .|...++............-..+..|++.+.+.+|+.+. ..+.|...++.+...+.+
T Consensus       173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~~~  229 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKKVI  229 (434)
T ss_dssp             CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEEEE
T ss_pred             eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccccc
Confidence            676666654422222222234578899988777776665 567888888886554444

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=94.81  E-value=4.9  Score=42.53  Aligned_cols=231  Identities=10%  Similarity=-0.009  Sum_probs=123.1

Q ss_pred             eeeeeeccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL  552 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl  552 (734)
                      .|.++.+..|+.-++.......+..   ....+.+|+|.+.... +.+-...+.|...++..+..... +...  ...-.
T Consensus       118 ~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~-lasgs~Dg~v~iWd~~~~~~~~~-~~~h--~~~v~  193 (420)
T 4gga_A          118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRN-MTSH--SARVG  193 (420)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEE-ECCC--SSCEE
T ss_pred             EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCE-EEEEECCCeEEEEEcCCCcEEEE-EeCC--CCceE
Confidence            3444555666666666555544433   2345789999985544 45555678888888875433222 2222  22333


Q ss_pred             eeeccCCcEEEEeCCCCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-e---EE
Q psy8875         553 AVDWIYSHIYWTDAHKNTIELANFEGTMRKV-LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-R---NM  627 (734)
Q Consensus       553 AvD~~~~~lY~td~~~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~---~~  627 (734)
                      ++.|. +.+..+-...+.|...+.......+ .+.........+...+...+|.....  .+.|...++.... .   ..
T Consensus       194 ~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~--D~~v~i~~~~~~~~~~~~~~  270 (420)
T 4gga_A          194 SLSWN-SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQ  270 (420)
T ss_dssp             EEEEE-TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCCSSCSCCSE
T ss_pred             EEeeC-CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec--cccceEEeeccccccceeee
Confidence            44443 4555666667788888776544332 33455566778888876655554442  3445444443211 1   11


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEEe--CCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC-CCCceE
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWVD--AKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW-QQKAIY  702 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~D--~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~-~~~~v~  702 (734)
                      ...........+++.+....++.+-  ...+.|...++........+..   ......+.+  .++.|+.+.. ..+.|.
T Consensus       271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~  347 (420)
T 4gga_A          271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLV  347 (420)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEE
Confidence            1122233456778877666666543  2346777777665443333321   223444444  3445555432 345566


Q ss_pred             EEeccCCCceEEEe
Q psy8875         703 KANKFTGDNLTAIT  716 (734)
Q Consensus       703 ~~~~~~G~~~~~l~  716 (734)
                      ..+..+++.+..+.
T Consensus       348 iwd~~~~~~v~~l~  361 (420)
T 4gga_A          348 IWKYPTMAKVAELK  361 (420)
T ss_dssp             EEETTTCCEEEEEC
T ss_pred             EEECCCCcEEEEEc
Confidence            66666666555553

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=94.69  E-value=0.022  Score=57.15  Aligned_cols=43  Identities=33%  Similarity=0.710  Sum_probs=31.6

Q ss_pred             ccccCcCC-CCCcc--cceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875         428 IDIDECET-PGSCS--QICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       428 ~~~~eC~~-~~~C~--~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      .|+|||.. ...|+  ..|+|+.|+|.|.|.+||.++..   .|.+++.
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~---~C~d~d~   48 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR---QCVAEGS   48 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSS---SEEETTC
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCC---cCCCCCC
Confidence            47899974 46786  47999999999999999998654   3888655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=94.53  E-value=4.9  Score=41.27  Aligned_cols=155  Identities=6%  Similarity=0.019  Sum_probs=87.5

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ...+.+|+|.+....|. +-...+.|...++..+... ...+......+..|++.+. ++++++-...+.|.+.++....
T Consensus        61 ~~~v~~~~~sp~g~~l~-s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~-~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A           61 QRTVRKVAWSPCGNYLA-SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS-GNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             SSCEEEEEECTTSSEEE-EEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEEECTTS
T ss_pred             CCcEEEEEECCCCCEEE-EEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCC-CCEEEEEECCCeEEEEECCCCC
Confidence            45678899998655554 4445666666666533322 1223323445678888865 4555555567888888886543


Q ss_pred             e---EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE--EEEEcCCCCceeEEEecCCCeEEEEeCCC
Q psy8875         581 R---KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN--MVIVSDIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       581 ~---~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~--~lv~~~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      .   ...+.........+++.|...+|.....  .+.|...++......  ..+.........|++++.+.+|..+. ..
T Consensus       139 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D  215 (345)
T 3fm0_A          139 EYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS-DD  215 (345)
T ss_dssp             CEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEE-TT
T ss_pred             CeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEe-CC
Confidence            2   1233344556788999987666665553  244544444333221  12223344567899987666665544 33


Q ss_pred             CeEEEE
Q psy8875         656 NEISSC  661 (734)
Q Consensus       656 ~~I~~~  661 (734)
                      +.|...
T Consensus       216 ~~v~iW  221 (345)
T 3fm0_A          216 RTVRIW  221 (345)
T ss_dssp             SCEEEE
T ss_pred             CeEEEe
Confidence            444433

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=94.48  E-value=0.016  Score=40.95  Aligned_cols=31  Identities=16%  Similarity=0.156  Sum_probs=25.2

Q ss_pred             cccCCCccc--CCCCCccccCCCCCccCCCccc
Q psy8875         187 LCLPAPQIN--AHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       187 ~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      +|+|+++|.  +..++|+|.|++||.|..++..
T Consensus        10 pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce~~   42 (45)
T 1a3p_A           10 YCLNGGVXMHIESLDSYTCNCVIGYSGDRCQTR   42 (45)
T ss_dssp             CCSSSCEEEECTTTSSEEEECCTTEETTTTCEE
T ss_pred             CCCCCCEEEeecCCCCEEEEcCCCCcCCcCCcc
Confidence            688888886  5667899999999999877653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.46  E-value=1.9  Score=45.02  Aligned_cols=177  Identities=7%  Similarity=-0.019  Sum_probs=96.0

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-CCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-EDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+..++........+.....+.+|+|.+....|...  ..+.+.++....+........ .....+..+++.+.+..|
T Consensus       157 ~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~--s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l  234 (365)
T 4h5i_A          157 AIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYI--TGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVL  234 (365)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEE--CSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEE
T ss_pred             CEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEec--cceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEE
Confidence            34666666554444444445567899999866655443  355677766654433222211 122335678887666555


Q ss_pred             EEEeCCC-C--eEEEEeCCCCceEE----EEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCC
Q psy8875         562 YWTDAHK-N--TIELANFEGTMRKV----LVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDI  633 (734)
Q Consensus       562 Y~td~~~-~--~I~~~~ldG~~~~~----l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l  633 (734)
                      ..+.... .  .|...++.......    .+.........|++.|...+|....  ..+.|...++.... ...+.....
T Consensus       235 ~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs--~D~~V~iwd~~~~~~~~~~~~gH~  312 (365)
T 4h5i_A          235 IAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS--NDNSIALVKLKDLSMSKIFKQAHS  312 (365)
T ss_dssp             EEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEETTSSS
T ss_pred             EEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc--CCCEEEEEECCCCcEEEEecCccc
Confidence            5543322 1  45555554333222    2234455678999998665555544  23566666664322 222222234


Q ss_pred             CCceeEEEecCCCeEEEEeCCCCeEEEEecC
Q psy8875         634 KWPNGLTLDLVQRRLYWVDAKLNEISSCDYN  664 (734)
Q Consensus       634 ~~P~glavD~~~~~LYw~D~~~~~I~~~~~d  664 (734)
                      ....+|++.+.+.+ ..+-+..+.|...++.
T Consensus       313 ~~V~~v~fSpdg~~-laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          313 FAITEVTISPDSTY-VASVSAANTIHIIKLP  342 (365)
T ss_dssp             SCEEEEEECTTSCE-EEEEETTSEEEEEECC
T ss_pred             CCEEEEEECCCCCE-EEEEeCCCeEEEEEcC
Confidence            45688999865544 4455556677766653

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=94.46  E-value=5  Score=41.08  Aligned_cols=157  Identities=12%  Similarity=0.044  Sum_probs=91.3

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ....+..|+|.+.. .+..+-...+.|+..++..+.....+ ......+..|++.+.++.|+ +-...+.|.+.++.+..
T Consensus        75 h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~~~~~~~~-~~h~~~v~~v~~sp~~~~l~-s~~~d~~i~~wd~~~~~  151 (343)
T 2xzm_R           75 HNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTYKRF-VGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNILGEC  151 (343)
T ss_dssp             CSSCEEEEEECSST-TEEEEEETTSEEEEEETTSSCEEEEE-ECCCSCEEEEEECSSTTEEE-EEETTSCEEEEESSSCE
T ss_pred             CCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEEEEE-cCCCCcEEEEEECCCCCEEE-EEcCCCEEEEEeccCCc
Confidence            34567888998754 44456566788888888755443333 33345677888887655554 44456889999887654


Q ss_pred             eEEEEc--CCCCCceeEEEeCCCC---------eEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEE
Q psy8875         581 RKVLVR--SYLDEPRSLALNPIDG---------WMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       581 ~~~l~~--~~l~~P~~iavD~~~g---------~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LY  649 (734)
                      ...+..  ........+++.|...         .++.+- +..+.|...+..+.... .+.........|++.+.+.+|.
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~  229 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV-GWDGRLKVWNTNFQIRY-TFKAHESNVNHLSISPNGKYIA  229 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE-ETTSEEEEEETTTEEEE-EEECCSSCEEEEEECTTSSEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE-cCCCEEEEEcCCCceeE-EEcCccccceEEEECCCCCEEE
Confidence            333221  2233456777766531         233333 22456666665443222 2233344567889986555554


Q ss_pred             EEeCCCCeEEEEec
Q psy8875         650 WVDAKLNEISSCDY  663 (734)
Q Consensus       650 w~D~~~~~I~~~~~  663 (734)
                       +-...+.|...++
T Consensus       230 -sgs~dg~v~iwd~  242 (343)
T 2xzm_R          230 -TGGKDKKLLIWDI  242 (343)
T ss_dssp             -EEETTCEEEEEES
T ss_pred             -EEcCCCeEEEEEC
Confidence             4445677888777

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=94.38  E-value=3  Score=43.54  Aligned_cols=195  Identities=7%  Similarity=-0.033  Sum_probs=107.5

Q ss_pred             ceEEEeeeccCCeEEEEEe-CCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875         504 SATAIDFVFRTGMIFWSDI-SEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~-~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~  581 (734)
                      .+..++|.|....|..+.. ..+.|+..++..+..... +. .-..+.+|++.+.+..|..+ . .+.+.+... .|...
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~-~~-~~~~V~~v~fspdg~~l~s~-s-~~~~~~~~~~~~~~~  210 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE-IE-TRGEVKDLHFSTDGKVVAYI-T-GSSLEVISTVTGSCI  210 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-EE-CSSCCCEEEECTTSSEEEEE-C-SSCEEEEETTTCCEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-eC-CCCceEEEEEccCCceEEec-c-ceeEEEEEeccCcce
Confidence            3567889887777776654 356777778775433322 33 33457889998766555444 3 344555554 44433


Q ss_pred             EEEE-cCCCCCceeEEEeCCCCeEEEEecCCC--ceEEEeccCCCceEE----EEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875         582 KVLV-RSYLDEPRSLALNPIDGWMYWSDWGQN--AKIERAGMDGSHRNM----VIVSDIKWPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       582 ~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~--~~I~~~~ldG~~~~~----lv~~~l~~P~glavD~~~~~LYw~D~~  654 (734)
                      .... .......+.+++.|...+|..+.....  ..|...++.......    .+.........|++.+.+.+|..+. .
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs-~  289 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS-N  289 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE-T
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc-C
Confidence            2222 122334678888886555555432221  244444443333222    1223344567889987666555443 4


Q ss_pred             CCeEEEEecCCCc-eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875         655 LNEISSCDYNGGN-RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       655 ~~~I~~~~~dG~~-~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~  705 (734)
                      .+.|...++.... .+.++..  ......+|++. .+.+.++-...+.|...+
T Consensus       290 D~~V~iwd~~~~~~~~~~~~g--H~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          290 DNSIALVKLKDLSMSKIFKQA--HSFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             TSCEEEEETTTTEEEEEETTS--SSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEecCc--ccCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            5678888875443 3333322  23345678884 456666665556665554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=94.23  E-value=5.2  Score=40.49  Aligned_cols=164  Identities=8%  Similarity=-0.015  Sum_probs=87.2

Q ss_pred             CCcceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCCccceeeeccC-CcEEEEeCCCCeEEEEeCC
Q psy8875         501 STKSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTIADGLAVDWIY-SHIYWTDAHKNTIELANFE  577 (734)
Q Consensus       501 ~~~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~p~glAvD~~~-~~lY~td~~~~~I~~~~ld  577 (734)
                      ....+.+|+|.+. .+.++.+-...+.|+..++..+.. ....+......+..|++.+.. +.++.+-...+.|.+.++.
T Consensus        56 H~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~  135 (316)
T 3bg1_A           56 HEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYT  135 (316)
T ss_dssp             CSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEEC
T ss_pred             CCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecC
Confidence            3456788888643 355666666778888888775432 222233233456788887653 5666776777888888876


Q ss_pred             CCceEEE---EcCCCCCceeEEEeCCC----------------CeEEEEecCCCceEEEeccCCCce-EEE--EEcCCCC
Q psy8875         578 GTMRKVL---VRSYLDEPRSLALNPID----------------GWMYWSDWGQNAKIERAGMDGSHR-NMV--IVSDIKW  635 (734)
Q Consensus       578 G~~~~~l---~~~~l~~P~~iavD~~~----------------g~LYwtd~~~~~~I~~~~ldG~~~-~~l--v~~~l~~  635 (734)
                      +.....+   ..........+++.|..                +.++.+-. ..+.|...++..... +.+  +......
T Consensus       136 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs-~D~~v~lWd~~~~~~~~~~~~l~~h~~~  214 (316)
T 3bg1_A          136 GEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGG-CDNLIKLWKEEEDGQWKEEQKLEAHSDW  214 (316)
T ss_dssp             SSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCB-TTSBCCEEEECTTSCEEEEECCBCCSSC
T ss_pred             CCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEec-CCCeEEEEEeCCCCccceeeecccCCCc
Confidence            5432111   11222334556665541                23444432 223333333332211 111  1122334


Q ss_pred             ceeEEEecCC---CeEEEEeCCCCeEEEEecCC
Q psy8875         636 PNGLTLDLVQ---RRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       636 P~glavD~~~---~~LYw~D~~~~~I~~~~~dG  665 (734)
                      .+.|++.+..   +.++.+-+..+.|...+++.
T Consensus       215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            5677876554   24555555567777777654

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=94.21  E-value=0.03  Score=41.14  Aligned_cols=33  Identities=30%  Similarity=0.917  Sum_probs=26.0

Q ss_pred             cccCcCCC--CCccc--cee--ccCCceEEecCCCeeeC
Q psy8875         429 DIDECETP--GSCSQ--ICL--NEKGGFKCECVAGYIKD  461 (734)
Q Consensus       429 ~~~eC~~~--~~C~~--~C~--n~~g~~~C~C~~gy~~~  461 (734)
                      ++++|...  .+|.+  +|+  +..++|.|.|++||.+.
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~   40 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD   40 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSS
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCC
Confidence            56777643  46764  798  88899999999999874

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=94.21  E-value=0.011  Score=54.97  Aligned_cols=31  Identities=19%  Similarity=0.609  Sum_probs=25.1

Q ss_pred             CccccCCCcceeecCCCcEecCCCCccccccCcCC
Q psy8875         401 HKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECET  435 (734)
Q Consensus       401 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC~~  435 (734)
                      ..|++..++|.|.|++||    .|..|++++||+.
T Consensus       131 g~C~~~~~~~~c~C~~g~----~G~~Ce~~~~c~~  161 (162)
T 1g1s_A          131 GECLETIGNYTCSCYPGF----YGPECEYVRDDDD  161 (162)
T ss_dssp             EEEEECSSSEEEEECTTE----ESTTSCEECC---
T ss_pred             CEEecCCCCceEeCCCCC----cCcccccCcccCC
Confidence            479999999999999999    4678999999863

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=94.19  E-value=0.016  Score=44.43  Aligned_cols=40  Identities=23%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             ccccCCCCCcCcccc-----CCCcceeecCCCcEecCCCCccc-cccCcC
Q psy8875         391 ECAKDNGGCLHKCVD-----LPVGYMCECNEGYKLSSNRHTCI-DIDECE  434 (734)
Q Consensus       391 eC~~~~~~C~~~C~~-----~~~~~~C~C~~G~~l~~~~~~C~-~~~eC~  434 (734)
                      +|..++..-...|++     ..++|+|.|++||    .|..|+ ++++|.
T Consensus         8 ~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf----~G~~Ce~~i~~~~   53 (63)
T 1hae_A            8 EKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGF----TGARCTENVPMKV   53 (63)
T ss_dssp             HHHHTTSCTTCEEEEEESSSSSCCEEEECCTTE----ESTTSCEECCSSC
T ss_pred             CCCCCcCCCCcEEecCCccCCCCCEEEECCCCC----cCCccCcCcCccc
Confidence            454433222347876     6789999999999    577895 677764

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=93.91  E-value=10  Score=42.60  Aligned_cols=79  Identities=11%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             eEEEecCCCeEEEEeCC---------------CCeEEEEecCCCceEEEEcCCC-------CCCCCeEEEE--ECC---E
Q psy8875         638 GLTLDLVQRRLYWVDAK---------------LNEISSCDYNGGNRRLVLYSPQ-------TLSHPFSIST--FED---W  690 (734)
Q Consensus       638 glavD~~~~~LYw~D~~---------------~~~I~~~~~dG~~~~~i~~~~~-------~~~~P~gl~v--~~~---~  690 (734)
                      .+++|+..++||+....               ...|..++.+....+-..+...       ....|.-+.+  .++   .
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~  324 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARK  324 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEE
Confidence            47899899999998653               2478888877554443333211       1123443333  134   4


Q ss_pred             EEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         691 LYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       691 lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +++.-..++.|+.+++.+|+.+....
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANK  350 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCcEEEEEECCCCCEeeccc
Confidence            55544456777888877777665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=93.79  E-value=3.6  Score=46.25  Aligned_cols=86  Identities=8%  Similarity=-0.012  Sum_probs=51.0

Q ss_pred             eEEEecCCCeEEEEeC--------------------------------CCCeEEEEecC-CCceEEEEcCCCCCCCCeEE
Q psy8875         638 GLTLDLVQRRLYWVDA--------------------------------KLNEISSCDYN-GGNRRLVLYSPQTLSHPFSI  684 (734)
Q Consensus       638 glavD~~~~~LYw~D~--------------------------------~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl  684 (734)
                      ++++|+.+++||+...                                ..+.|..+++. |+.+=.+......  ..-.+
T Consensus       416 ~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~--~~g~~  493 (582)
T 1flg_A          416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL--WAGVL  493 (582)
T ss_dssp             CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC--CSCCE
T ss_pred             CceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC--cccce
Confidence            6788988888888642                                13567777764 3322222211111  11235


Q ss_pred             EEECCEEEEEeCCCCceEEEeccCCCceEEEecccc-cCCCcc
Q psy8875         685 STFEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQ-THEPLN  726 (734)
Q Consensus       685 ~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~-l~~P~~  726 (734)
                      +..++.||+... .+.|+.++..+|+.+..+..... ...|+.
T Consensus       494 ~tagglvf~g~~-dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~  535 (582)
T 1flg_A          494 ATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTGSGIVSPPIT  535 (582)
T ss_dssp             EETTTEEEEECT-TSEEEEEETTTCCEEEEEECSSCCCSCCEE
T ss_pred             EeCCCEEEEECC-CCcEEEEECCCCCEEEEecCCCCcccCceE
Confidence            567888888765 47888999889988776654332 234544

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=93.76  E-value=0.023  Score=43.02  Aligned_cols=35  Identities=23%  Similarity=0.644  Sum_probs=28.0

Q ss_pred             ccccccCcCCCCCcc----cceeccCCceEEecCCCee-eC
Q psy8875         426 TCIDIDECETPGSCS----QICLNEKGGFKCECVAGYI-KD  461 (734)
Q Consensus       426 ~C~~~~eC~~~~~C~----~~C~n~~g~~~C~C~~gy~-~~  461 (734)
                      .|.++|+|.. .+|.    .+|+++.++|.|.|++||. +.
T Consensus         7 ~~~~~d~C~s-nPC~nga~gtC~~~~g~y~C~C~~Gy~~G~   46 (61)
T 2k2s_B            7 LSETPAACSS-NPCGPEAAGTCKETNSGYICRCNQGYRISL   46 (61)
T ss_dssp             CTTSCCHHHH-CSSCSSSCCEEEECSSEEEEECCTTEEEEE
T ss_pred             hcCCCCcCcC-CCCcCCCccccccCCCceEeECCCCCccCC
Confidence            4667788863 4675    3799999999999999998 64

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=93.66  E-value=10  Score=44.28  Aligned_cols=230  Identities=13%  Similarity=0.069  Sum_probs=122.4

Q ss_pred             cceEEeecCCCceEEEecC-------CcceEEEeeeccC-CeEEEEEeC-C----CcEEEEecCCCCceEEEEeCCCC--
Q psy8875         483 HDIRKISLDHHEMTAIVNS-------TKSATAIDFVFRT-GMIFWSDIS-E----KKIYKAPIDEGSERTVVIEEDKT--  547 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~-------~~~~~~i~~d~~~-~~lyw~d~~-~----~~I~~~~l~~g~~~~~~~~~~~~--  547 (734)
                      ..|+|-.-.|...+.+...       ...+.+|++++.. +.||+.-.. .    ..|++. .|+|..-+.+.. .+.  
T Consensus        37 ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S-~DgG~TW~~~~~-~~~~~  114 (789)
T 1sqj_A           37 GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVS-EDRGQSFTIYES-PFPMG  114 (789)
T ss_dssp             SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEE-SSTTSEEEEEEC-SSCCC
T ss_pred             CCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEE-CCCCCcceeccC-CcccC
Confidence            4566655555556655432       2357889998754 566665422 2    566665 465544333321 111  


Q ss_pred             -------CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-----CCCCceeEEEeCCCC-eEEEEecCCCce
Q psy8875         548 -------IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS-----YLDEPRSLALNPIDG-WMYWSDWGQNAK  614 (734)
Q Consensus       548 -------~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-----~l~~P~~iavD~~~g-~LYwtd~~~~~~  614 (734)
                             ....|+|++....+.|+-.....|++..=.|+.-+.+...     .......|++||..+ .||...... ..
T Consensus       115 ~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-~~  193 (789)
T 1sqj_A          115 ANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAP-QG  193 (789)
T ss_dssp             TTSTTTTSCCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESST-TC
T ss_pred             ccCCCccceeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcCC-Ce
Confidence                   2357999987544444433346677765555554444321     012345788898654 788776421 56


Q ss_pred             EEEeccCCCceEEEEE--cCC---------------CCceeEEEecCCCeEEEEe--------CCCCeEEEEecCCCceE
Q psy8875         615 IERAGMDGSHRNMVIV--SDI---------------KWPNGLTLDLVQRRLYWVD--------AKLNEISSCDYNGGNRR  669 (734)
Q Consensus       615 I~~~~ldG~~~~~lv~--~~l---------------~~P~glavD~~~~~LYw~D--------~~~~~I~~~~~dG~~~~  669 (734)
                      |++..-.|..-+.+..  ...               ..|..|++++..++||.+-        ...+.|++..-.|..=+
T Consensus       194 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW~  273 (789)
T 1sqj_A          194 MYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAWD  273 (789)
T ss_dssp             EEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCEE
T ss_pred             EEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCceE
Confidence            7776544544333210  000               1237888987788999872        24567887765555433


Q ss_pred             EEEcCCCC-C-------CC----CeEEEEE---CCEEEEEeCCC------CceEEEeccCCCceEEEe
Q psy8875         670 LVLYSPQT-L-------SH----PFSISTF---EDWLYWSDWQQ------KAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       670 ~i~~~~~~-~-------~~----P~gl~v~---~~~lywtd~~~------~~v~~~~~~~G~~~~~l~  716 (734)
                      .+...... +       ..    -.+|++.   .+.||++-...      +.|++- ...|+.-+.+.
T Consensus       274 ~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S-~DgG~tW~~~~  340 (789)
T 1sqj_A          274 DITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLS-TDAGATWKDVT  340 (789)
T ss_dssp             ECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEE-SSTTSSEEEHH
T ss_pred             ECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEe-cCCCCCceeCc
Confidence            33211110 0       01    1366664   45788765321      466665 34566666554

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=93.64  E-value=0.01  Score=43.52  Aligned_cols=42  Identities=19%  Similarity=0.540  Sum_probs=27.3

Q ss_pred             ceeecCCCcEecCCCCccccccCcCCCCCcccceeccCCceEEecCCCeeeC
Q psy8875         410 YMCECNEGYKLSSNRHTCIDIDECETPGSCSQICLNEKGGFKCECVAGYIKD  461 (734)
Q Consensus       410 ~~C~C~~G~~l~~~~~~C~~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~  461 (734)
                      ++|.|++||.          .+.|++.+.|...-....++|.|.|++||.+.
T Consensus         3 ~~C~C~~g~~----------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~   44 (52)
T 3ca7_A            3 PTYKCPETFD----------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQ   44 (52)
T ss_dssp             CCBCCCHHHH----------HHTSCTTCEEEEEEETTEEEEEEECCTTEEST
T ss_pred             eeeECCCCCc----------CCcCCCCCEEecCccCCCCCEEEECCCCCcCC
Confidence            4689999984          34555544442211113568999999999975

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=93.24  E-value=14  Score=42.08  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=32.7

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-----------CCccceeeeccCCcEEEEeCCCCeEEEEeC-CCCce
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-----------TIADGLAVDWIYSHIYWTDAHKNTIELANF-EGTMR  581 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-----------~~p~glAvD~~~~~lY~td~~~~~I~~~~l-dG~~~  581 (734)
                      .++||+... .+.|+.+++..|... .......           ....+++++  .++||+... .++|...+. +|+.+
T Consensus        66 ~g~vyv~~~-~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           66 DGVIYTSMS-WSRVIAVDAASGKEL-WRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVGTL-DGRLIALDAKTGKAI  140 (668)
T ss_dssp             TTEEEEEEG-GGEEEEEETTTCCEE-EEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEECT-TSEEEEEETTTCCEE
T ss_pred             CCEEEEECC-CCeEEEEECCCChhc-eEECCCCCccccccccccCCccceEEE--CCEEEEEcC-CCEEEEEECCCCCEe
Confidence            566666643 345666666544332 1111111           012456665  577887753 467777775 45543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=93.19  E-value=4.3  Score=41.10  Aligned_cols=118  Identities=10%  Similarity=0.034  Sum_probs=66.7

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeeecc-CCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVDWI-YSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD~~-~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..+..|+|++... +..+-...+.|+..++..+... ...+......+..|++.+. .++++++-...+.|.+.++....
T Consensus        14 ~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           14 DMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             CeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            3566788887544 4455556777777777643321 1222323344566776432 35666666667889988886532


Q ss_pred             --eEEEEcCCCCCceeEEEeCCC-CeEEEEecCCCceEEEeccCC
Q psy8875         581 --RKVLVRSYLDEPRSLALNPID-GWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       581 --~~~l~~~~l~~P~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG  622 (734)
                        ....+.........|++.|.. +.++.+-. ..+.|...++.+
T Consensus        93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs-~D~~i~lwd~~~  136 (316)
T 3bg1_A           93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACGS-SDGAISLLTYTG  136 (316)
T ss_dssp             CCEEEEECCCSSCCCEEEECCTTTCSCEEEEC-SSSCEEEEEECS
T ss_pred             ceEEEEccCCCCceEEEEECCCCCCcEEEEEc-CCCCEEEEecCC
Confidence              222233445567899998863 55555442 235555555544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.10  E-value=8.5  Score=39.13  Aligned_cols=157  Identities=11%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEE-EE-eC-CCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTV-VI-EE-DKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG  578 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~-~~-~~-~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG  578 (734)
                      ...+.++++++.   +..+-...+.|+..++..+..... .+ .. ....+..|++.+.+ .+..+-...+.|.+.++..
T Consensus        14 ~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~   89 (330)
T 2hes_X           14 KEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEE   89 (330)
T ss_dssp             SSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC--
T ss_pred             CCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-CEEEEEeCCCcEEEEEccc
Confidence            345667777743   555555677788777764332221 22 11 22346678888654 4555555567888887743


Q ss_pred             Cc-------eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC--CCceEE--EEEcCCCCceeEEEecCCCe
Q psy8875         579 TM-------RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD--GSHRNM--VIVSDIKWPNGLTLDLVQRR  647 (734)
Q Consensus       579 ~~-------~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~--lv~~~l~~P~glavD~~~~~  647 (734)
                      ..       ....+.........|++.|...+|.-...  .+.|...+++  +...+.  .+.........|++.+.+..
T Consensus        90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~--D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~  167 (330)
T 2hes_X           90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR--DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL  167 (330)
T ss_dssp             -----CCCEEEEEEC----CEEEEEECTTSCEEEEEET--TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSE
T ss_pred             CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC--CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCE
Confidence            21       11223344556789999986555554442  3555555552  222222  22233345678888765555


Q ss_pred             EEEEeCCCCeEEEEecCC
Q psy8875         648 LYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       648 LYw~D~~~~~I~~~~~dG  665 (734)
                      |. +-...+.|...++..
T Consensus       168 l~-s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          168 LA-SSSYDDTVRIWKDYD  184 (330)
T ss_dssp             EE-EEETTSCEEEEEEET
T ss_pred             EE-EEcCCCeEEEEECCC
Confidence            44 444455666655543

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=93.09  E-value=7.8  Score=46.02  Aligned_cols=176  Identities=9%  Similarity=0.007  Sum_probs=103.4

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEE
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIY  562 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY  562 (734)
                      ..|+..+..+............+.+|+|.+ .. +..+-...+.|+..++..+.....+.  ....+..+++++....|+
T Consensus        39 g~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~  114 (902)
T 2oaj_A           39 GEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWML  114 (902)
T ss_dssp             SEEEEECSTTCEEEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEE
T ss_pred             CEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEE
Confidence            345555555443333333345678999998 44 44444567888888887554433332  224577889987777776


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEE-----------cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLV-----------RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~-----------~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      .... .+.|.+.++.+.....+.           .........|+++|..+.++.+-. ..+.| ..++........+..
T Consensus       115 sgs~-dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-~dg~v-lWd~~~~~~~~~~~~  191 (902)
T 2oaj_A          115 IGLQ-NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYVTL-TYSLVENEIKQSFIY  191 (902)
T ss_dssp             EEET-TSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-SSCEE-EEETTTTEEEEEECC
T ss_pred             EEcC-CCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe-CCCcE-EEECCCCceEEEEec
Confidence            6654 688999998876542111           123356789999997554544543 34566 666655433222221


Q ss_pred             C------------------CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         632 D------------------IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       632 ~------------------l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .                  ....+.+++.+.+. ++.+-...+.|...++...
T Consensus       192 ~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          192 ELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             CBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTTC
T ss_pred             ccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC
Confidence            1                  13357788876544 4445455677887777543

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=93.00  E-value=0.057  Score=38.06  Aligned_cols=24  Identities=25%  Similarity=0.617  Sum_probs=18.9

Q ss_pred             Cccc--cCCCcceeecCCCcEecCCCCccc
Q psy8875         401 HKCV--DLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       401 ~~C~--~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ..|+  +..++|+|.|++||    .|..|+
T Consensus        15 g~C~~~~~~~~~~C~C~~G~----~G~~Ce   40 (45)
T 1a3p_A           15 GVXMHIESLDSYTCNCVIGY----SGDRCQ   40 (45)
T ss_dssp             CEEEECTTTSSEEEECCTTE----ETTTTC
T ss_pred             CEEEeecCCCCEEEEcCCCC----cCCcCC
Confidence            3676  67889999999999    466774

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=92.90  E-value=0.022  Score=43.61  Aligned_cols=36  Identities=11%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             CCcccCCCcccC-----CCCCccccCCCCCccCCCcccccc
Q psy8875         185 SHLCLPAPQINA-----HSPKISCACPEGLKLLPDLLMCAE  220 (734)
Q Consensus       185 ~~~C~~~~~~~~-----~~~~~~C~C~~G~~~~~~~~~~~~  220 (734)
                      +.+|+|+++|..     ..+.|.|.|++||.|..++...++
T Consensus        11 ~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce~~i~~   51 (63)
T 1hae_A           11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccCcCcCc
Confidence            457888888864     456899999999999988766544

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=92.85  E-value=0.05  Score=38.62  Aligned_cols=23  Identities=30%  Similarity=0.794  Sum_probs=18.3

Q ss_pred             ccccCC--CcceeecCCCcEecCCCCccc
Q psy8875         402 KCVDLP--VGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       402 ~C~~~~--~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|.+..  ++|.|.|++||    .|..|+
T Consensus        18 ~C~~~~~~~~~~C~C~~Gy----tG~~Ce   42 (46)
T 1k36_A           18 QCIYLVDMSQNYCRCEVGY----TGVRCE   42 (46)
T ss_dssp             EEEEETTTTEEEEEECTTC----SSTTSC
T ss_pred             EeeccCCCCCEEEECCCCC----ccCCCC
Confidence            677654  68999999999    677775

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=92.70  E-value=9.1  Score=44.70  Aligned_cols=209  Identities=12%  Similarity=0.105  Sum_probs=109.7

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC------CCCCccceeeeccC-CcEEEEeCC-C----Ce
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE------DKTIADGLAVDWIY-SHIYWTDAH-K----NT  570 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~------~~~~p~glAvD~~~-~~lY~td~~-~----~~  570 (734)
                      .++.+|++++....+.|+-...+.|+|.. |+|..-+.+...      ......+|++|+.. +.||++-.. .    ..
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence            46788889887544444444556788765 444433322211      11246689999754 567776532 2    57


Q ss_pred             EEEEeCCCCceEEEEcC-CC-------CCceeEEEeCCCC-eEEEEecCCCceEEEeccCCCceEEEEEcC-----CCCc
Q psy8875         571 IELANFEGTMRKVLVRS-YL-------DEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVSD-----IKWP  636 (734)
Q Consensus       571 I~~~~ldG~~~~~l~~~-~l-------~~P~~iavD~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-----l~~P  636 (734)
                      |++..=.|..-+.+... ..       .....|+|+|.+. .||...  ....|++..-.|..-+.+....     -...
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~--~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT--RTEGIWKSSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC--SSSCEEEESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe--ccCCEEEECCCCcccCCCccCccccCCCCCe
Confidence            77776556555544321 11       0235799998754 555543  2367887665555444332100     0123


Q ss_pred             eeEEEecCC-CeEEEEeCCCCeEEEEecCCCceEEEEcCCCC--------C-------CCCeEEEEE--CCEEEEEe---
Q psy8875         637 NGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGNRRLVLYSPQT--------L-------SHPFSISTF--EDWLYWSD---  695 (734)
Q Consensus       637 ~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~--------~-------~~P~gl~v~--~~~lywtd---  695 (734)
                      ..|++|+.+ +.||++-.....|++..=.|..=+.+...+..        +       ..|..|++.  .+.||.+-   
T Consensus       172 ~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~  251 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATAPQGMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADY  251 (789)
T ss_dssp             EEEEECTTSTTCEEEEESSTTCEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcCCCeEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecC
Confidence            467787654 57888765435666643333333322211110        1       122566663  78888872   


Q ss_pred             -----CCCCceEEEeccCCCceEEE
Q psy8875         696 -----WQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       696 -----~~~~~v~~~~~~~G~~~~~l  715 (734)
                           ...+.|++.. ..|+.-+.+
T Consensus       252 ~~p~~g~~g~l~~S~-DgG~tW~~~  275 (789)
T 1sqj_A          252 PGPWGVTFGEVWRQN-RTSGAWDDI  275 (789)
T ss_dssp             CSSSCCCCCCEEEEE-TTTCCEEEC
T ss_pred             CCCCCCCCceEEEEe-CCCCceEEC
Confidence                 2345676654 344444433

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=92.67  E-value=11  Score=39.40  Aligned_cols=181  Identities=7%  Similarity=-0.151  Sum_probs=85.6

Q ss_pred             ccceEEeecCC-CceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----------------
Q psy8875         482 KHDIRKISLDH-HEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----------------  543 (734)
Q Consensus       482 ~~~I~~i~l~~-~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----------------  543 (734)
                      +..|+.-++.. .....+......+.+|+|+|....++.+-...+.|+..++..+........                 
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            34455555532 233344444567789999987777777777778888877764432111100                 


Q ss_pred             -------CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc------------------CCCCCceeEEEe
Q psy8875         544 -------EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR------------------SYLDEPRSLALN  598 (734)
Q Consensus       544 -------~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~------------------~~l~~P~~iavD  598 (734)
                             ........+++....++..++-...++|.+.++........+.                  .......+....
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                   0111223344333344455555556667666654322111000                  011122233344


Q ss_pred             CCCCeEEEEecCCCceEEEeccCCC-ceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         599 PIDGWMYWSDWGQNAKIERAGMDGS-HRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       599 ~~~g~LYwtd~~~~~~I~~~~ldG~-~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      +..+.+|.+-.+..+.|...++... ....+. ..-.....|++.+.+.+|-.+.  .+.|..+++.|
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g  389 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG  389 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence            4445555554334466666665433 233332 2223456788877666665443  34555555544

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=92.39  E-value=0.032  Score=40.99  Aligned_cols=33  Identities=18%  Similarity=0.161  Sum_probs=27.4

Q ss_pred             CCcccCCCccc--CCCCCccccCCCCCccCCCccc
Q psy8875         185 SHLCLPAPQIN--AHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       185 ~~~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      +.+|+|+++|.  +..+.|.|.|++||.|..|+..
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce~~   45 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQYR   45 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCEE
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCCcC
Confidence            45789998887  6667899999999999887654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=92.31  E-value=1.1  Score=50.35  Aligned_cols=107  Identities=15%  Similarity=0.131  Sum_probs=68.1

Q ss_pred             CCCCccceeeeccCCcEEEEeCC---------------------CCeEEEEeCCCCc-------eEEEE-c---------
Q psy8875         545 DKTIADGLAVDWIYSHIYWTDAH---------------------KNTIELANFEGTM-------RKVLV-R---------  586 (734)
Q Consensus       545 ~~~~p~glAvD~~~~~lY~td~~---------------------~~~I~~~~ldG~~-------~~~l~-~---------  586 (734)
                      .+..|++|++++.++.||++-..                     .+.|++...++..       ..+++ .         
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            46689999999999999999653                     2578888764321       11222 1         


Q ss_pred             -----------CCCCCceeEEEeCCCCeEEEEecCC-----------CceEEEeccC-CCceEEEEEcCCCCceeEEEec
Q psy8875         587 -----------SYLDEPRSLALNPIDGWMYWSDWGQ-----------NAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDL  643 (734)
Q Consensus       587 -----------~~l~~P~~iavD~~~g~LYwtd~~~-----------~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~  643 (734)
                                 ..+..|..|++|+. |.||+..-+.           +..++..... |..++.+....-....|+++.+
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp  540 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence                       12678999999985 5677765332           2355666554 4333333222234567888888


Q ss_pred             CCCeEEEEe
Q psy8875         644 VQRRLYWVD  652 (734)
Q Consensus       644 ~~~~LYw~D  652 (734)
                      ..++||+.-
T Consensus       541 Dg~tlfvni  549 (592)
T 3zwu_A          541 DQKTLFVGI  549 (592)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            888888773

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=91.66  E-value=14  Score=42.70  Aligned_cols=217  Identities=12%  Similarity=0.063  Sum_probs=112.6

Q ss_pred             ceeeeeeccceEEeecCCCceEEEec-------CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC---CceEEE---
Q psy8875         475 ASLLFARKHDIRKISLDHHEMTAIVN-------STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG---SERTVV---  541 (734)
Q Consensus       475 ~~l~~~~~~~I~~i~l~~~~~~~l~~-------~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g---~~~~~~---  541 (734)
                      ..|.+.....|.+++.....+..+..       ....+.+|..|. .+.||+. ...+.|++++....   ......   
T Consensus       384 g~lWigt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWig-T~~~Gl~~~~~~~~~~~~~~~~~~~~  461 (758)
T 3ott_A          384 QQLWIATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQLWIS-TCLGGIFVVDKHKLMQSTSGQYIAEQ  461 (758)
T ss_dssp             SCEEEEETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSEEEEE-ESSSCEEEEEHHHHHHCCSSEEECSE
T ss_pred             CCEEEEeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCCEEEE-ECCCceEEEccccccccCCcceeccc
Confidence            34555555678887776655544321       112356666663 4566554 34456777765410   001111   


Q ss_pred             -E--eCCC--CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCC---CCceeEEEeCCCCeEEEEecCCCc
Q psy8875         542 -I--EEDK--TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYL---DEPRSLALNPIDGWMYWSDWGQNA  613 (734)
Q Consensus       542 -~--~~~~--~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l---~~P~~iavD~~~g~LYwtd~~~~~  613 (734)
                       .  ..++  ..+..|..| ..++|+++....+.|.+.+......+.+....+   ..+.+|..|. .|.|+++..   .
T Consensus       462 ~~~~~~~l~~~~i~~i~~d-~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~lWigt~---~  536 (758)
T 3ott_A          462 NYSVHNGLSGMFINQIIPD-NEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDE-DGLLWVGFH---G  536 (758)
T ss_dssp             EECGGGTCSCSCEEEEEEC-TTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECT-TSCEEEEET---T
T ss_pred             ccccccccccceeeeEEEc-CCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECC-CCCEEEEec---C
Confidence             1  1122  135667778 456777633333568888876554444432222   3567888884 688888762   3


Q ss_pred             eEEEeccCCCceEEEEEcCC--CCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECC
Q psy8875         614 KIERAGMDGSHRNMVIVSDI--KWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FED  689 (734)
Q Consensus       614 ~I~~~~ldG~~~~~lv~~~l--~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~  689 (734)
                      .|.+.+......+.+....+  ....+|..|  .++|+++.  .+.|.+++......+........+   .+..+  .++
T Consensus       537 Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~--~g~lWi~t--~~Gl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~G  609 (758)
T 3ott_A          537 GVMRINPKDESQQSISFGSFSNNEILSMTCV--KNSIWVST--TNGLWIIDRKTMDARQQNMTNKRF---TSLLFDPKED  609 (758)
T ss_dssp             EEEEECC--CCCCBCCCCC---CCEEEEEEE--TTEEEEEE--SSCEEEEETTTCCEEEC--CCCCC---SEEEEETTTT
T ss_pred             ceEEEecCCCceEEecccCCCccceEEEEEC--CCCEEEEC--CCCeEEEcCCCceeEEecCCCCce---eeeEEECCCC
Confidence            57777765433222211112  234566554  78888776  346888887654433321111111   13333  368


Q ss_pred             EEEEEeCCCCceEEEecc
Q psy8875         690 WLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       690 ~lywtd~~~~~v~~~~~~  707 (734)
                      .||+.-.  +.+.++++.
T Consensus       610 ~l~fG~~--~Gl~~f~p~  625 (758)
T 3ott_A          610 CVYLGGA--DGFGISHSN  625 (758)
T ss_dssp             EEEEECB--SEEEEEEC-
T ss_pred             cEEEecC--CceEEEChh
Confidence            8888753  356666653

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=91.55  E-value=8.2  Score=44.87  Aligned_cols=161  Identities=10%  Similarity=0.052  Sum_probs=91.0

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-C----------CCCCccceeeeccC-CcEEEEeCC--
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-E----------DKTIADGLAVDWIY-SHIYWTDAH--  567 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-~----------~~~~p~glAvD~~~-~~lY~td~~--  567 (734)
                      ..++.+|++++....++|+-...+.|+|.. ++|..-+.+.. .          .......|++|+.+ +.||.+...  
T Consensus        20 ~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~   98 (763)
T 3a0f_A           20 GGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV   98 (763)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred             CCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence            457788999988765555555667788765 54443222221 1          12345679999854 667775531  


Q ss_pred             ----CCeEEEEeCCCCceEEEEcC-CC-----CCc--eeEEEeCCC-CeEEEEecCCCceEEEeccCCCceEEEEEcCCC
Q psy8875         568 ----KNTIELANFEGTMRKVLVRS-YL-----DEP--RSLALNPID-GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIK  634 (734)
Q Consensus       568 ----~~~I~~~~ldG~~~~~l~~~-~l-----~~P--~~iavD~~~-g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~  634 (734)
                          ...|++..=.|+.-+.+... ..     ...  ..|+|+|.+ +.||...  ....|++..-.|..-+.+.  .+.
T Consensus        99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~--~~~~l~~S~DgG~TW~~~~--~~~  174 (763)
T 3a0f_A           99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS--RTQGLWRSTDRAQTWSRMN--QLP  174 (763)
T ss_dssp             TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC--SSSCEEEESSTTSSCEECT--TSC
T ss_pred             cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe--CCCcEEEECCCCcCccccc--cCc
Confidence                35677766556554444321 11     111  369999875 6677764  2357887755454433322  111


Q ss_pred             -------CceeEEEecCC-CeEEEEeCCCCeEEEEecCCCc
Q psy8875         635 -------WPNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGN  667 (734)
Q Consensus       635 -------~P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~  667 (734)
                             ....|++|+.+ ++||++-...+.|++..=.|..
T Consensus       175 ~~~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~t  215 (763)
T 3a0f_A          175 DSSTYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGAN  215 (763)
T ss_dssp             CCSCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSS
T ss_pred             ccCCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCC
Confidence                   13457788654 5788886543356654433443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.25  E-value=1.8  Score=48.49  Aligned_cols=107  Identities=14%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             CCcceEEEeeeccCCeEEEEEeC---------------------CCcEEEEecCCCCc------eEEEE-e---------
Q psy8875         501 STKSATAIDFVFRTGMIFWSDIS---------------------EKKIYKAPIDEGSE------RTVVI-E---------  543 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~---------------------~~~I~~~~l~~g~~------~~~~~-~---------  543 (734)
                      .+.++.++++++.++.||++-..                     .+.|+|+..+.+..      -.+++ .         
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            46689999999999999998542                     25688887653321      11221 1         


Q ss_pred             -----------CCCCCccceeeeccCCcEEEEeCC------------CCeEEEEeCC-CCceEEEEcCCCCCceeEEEeC
Q psy8875         544 -----------EDKTIADGLAVDWIYSHIYWTDAH------------KNTIELANFE-GTMRKVLVRSYLDEPRSLALNP  599 (734)
Q Consensus       544 -----------~~~~~p~glAvD~~~~~lY~td~~------------~~~I~~~~ld-G~~~~~l~~~~l~~P~~iavD~  599 (734)
                                 ..+..|.+|+||+. ++||+..-+            +..+...... |..++.+.........|+++.|
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~-G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp  540 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKA-GRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTT-CCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             ccccccccCCCCCccCCcceEECCC-CCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence                       12567999999965 556665432            2456666654 5555555544456778888888


Q ss_pred             CCCeEEEEe
Q psy8875         600 IDGWMYWSD  608 (734)
Q Consensus       600 ~~g~LYwtd  608 (734)
                      ....||+.-
T Consensus       541 Dg~tlfvni  549 (592)
T 3zwu_A          541 DQKTLFVGI  549 (592)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            777787764

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=90.89  E-value=0.31  Score=40.55  Aligned_cols=58  Identities=22%  Similarity=0.501  Sum_probs=46.8

Q ss_pred             Ccccc-CCCcceeecCCCcEecCCCCccccccC-cC-CCCCcc--cceeccC-CceEEecCCCeee
Q psy8875         401 HKCVD-LPVGYMCECNEGYKLSSNRHTCIDIDE-CE-TPGSCS--QICLNEK-GGFKCECVAGYIK  460 (734)
Q Consensus       401 ~~C~~-~~~~~~C~C~~G~~l~~~~~~C~~~~e-C~-~~~~C~--~~C~n~~-g~~~C~C~~gy~~  460 (734)
                      +.|.. .++..+|.|..||+.  ++..|..+++ |+ +++.|.  +.|+.+. .-..|.|.++|.-
T Consensus        22 A~C~r~~~G~e~CrCl~gY~~--dg~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~~   85 (105)
T 1n1i_A           22 AACYRYLDGTEEWRCLLGFKE--VGGKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGSE   85 (105)
T ss_dssp             EEEEECTTSCEEEEECTTEEE--CSSSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTCC
T ss_pred             CCeEECCCCCEeEEEECCeec--cCCEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCCc
Confidence            35777 688999999999988  6889988888 75 458886  4888885 7789999999754

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=90.41  E-value=29  Score=39.67  Aligned_cols=55  Identities=9%  Similarity=0.042  Sum_probs=33.0

Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875         640 TLDLVQRRLYWVDAKLNEISSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       640 avD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~  696 (734)
                      ++....+.||... ..+.|+.++.. |+.+-.+.........|+.. ...++.|++-.
T Consensus       481 ~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty-~~~G~qyv~~~  536 (689)
T 1yiq_A          481 TLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQPAASGVMAAPVTY-SVDGEQYVTFM  536 (689)
T ss_dssp             EEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-EETTEEEEEEE
T ss_pred             cceECCCEEEEEC-CCCcEEEEECCCCccceeeeCCCCcccCceEE-EECCEEEEEEE
Confidence            4445678888874 56788888865 44444443333334456433 26778888743

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=90.20  E-value=0.07  Score=37.85  Aligned_cols=30  Identities=20%  Similarity=0.193  Sum_probs=22.8

Q ss_pred             CcccCCCcccCC--CCCccccCCCCCccCCCcc
Q psy8875         186 HLCLPAPQINAH--SPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       186 ~~C~~~~~~~~~--~~~~~C~C~~G~~~~~~~~  216 (734)
                      .+|+| ++|.+.  .+.|.|.|++||.|..++.
T Consensus        12 ~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce~   43 (46)
T 1k36_A           12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCEH   43 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSCC
T ss_pred             CCCCC-CEeeccCCCCCEEEECCCCCccCCCCc
Confidence            57888 577643  3578999999999987654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=90.07  E-value=32  Score=39.63  Aligned_cols=210  Identities=8%  Similarity=-0.013  Sum_probs=106.9

Q ss_pred             cceeeeeeccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEE-eCC--CCCc
Q psy8875         474 HASLLFARKHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVI-EED--KTIA  549 (734)
Q Consensus       474 ~~~l~~~~~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~-~~~--~~~p  549 (734)
                      ...|.+.....+.+++.....+..... ....+..+..  ..+.||+...  +.|++++...+....... ...  ...+
T Consensus        73 ~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~--~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~l~~~~i  148 (758)
T 3ott_A           73 NTYLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL--QGDTLWLGAL--NGLYTYQLQSRKLTSFDTRRNGLPNNTI  148 (758)
T ss_dssp             TTEEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE--ETTEEEEEET--TEEEEEETTTCCEEEECHHHHCCSCSCE
T ss_pred             CCcEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe--cCCcEEEEcC--CcceeEeCCCCeEEEeccCCCCcCCCeE
Confidence            345666666677777765443322111 1123444433  3677776642  378888876433222100 011  1235


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-----CCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-----LDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH  624 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-----l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~  624 (734)
                      ..|+.| ..++||+...  +.|.+.+......+.+....     ......|..|...+.||+...   ..|.+.+.....
T Consensus       149 ~~i~~d-~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~---~Gl~~~~~~~~~  222 (758)
T 3ott_A          149 YSIIRT-KDNQIYVGTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE---GYLFQYFPSTGQ  222 (758)
T ss_dssp             EEEEEC-TTCCEEEEET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE---EEEEEEETTTTE
T ss_pred             EEEEEc-CCCCEEEEeC--CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC---CCCeEEcCCCCe
Confidence            567777 4677877654  45777776654433322111     112567888876666666542   357777765433


Q ss_pred             eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC---CCCCC--CeEEEEE-CCEEEEEeC
Q psy8875         625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP---QTLSH--PFSISTF-EDWLYWSDW  696 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~---~~~~~--P~gl~v~-~~~lywtd~  696 (734)
                      .+.+....-.....|+.| ..+.|+++..  +.|.+++......+.+....   ..+..  ..+|..+ ++.||+...
T Consensus       223 ~~~~~~l~~~~i~~i~~d-~~g~lWigT~--~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~  297 (758)
T 3ott_A          223 IKQTEAFHNNSIKSLALD-GNGDLLAGTD--NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTD  297 (758)
T ss_dssp             EEEEEEEEEEEEEEEEEC-TTCCEEEEET--TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEES
T ss_pred             EEeccCCCCCeEEEEEEc-CCCCEEEEeC--CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeC
Confidence            222211111224567777 5677777652  46888777655444443211   11222  2344443 456666553

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=89.81  E-value=22  Score=37.37  Aligned_cols=221  Identities=8%  Similarity=-0.018  Sum_probs=122.5

Q ss_pred             ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCc
Q psy8875         482 KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSH  560 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~  560 (734)
                      +..|+..++....... +......+.+++++   +.+..+-...+.|+..+..........+........++++.+.+. 
T Consensus       168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-  243 (420)
T 4gga_A          168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-  243 (420)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-
T ss_pred             CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-
Confidence            3445555554433322 22233455666665   344555556677777766543333333444445566777775544 


Q ss_pred             EEEEeCCCCeEEEEeCCCCce----EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCC
Q psy8875         561 IYWTDAHKNTIELANFEGTMR----KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKW  635 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~  635 (734)
                      +.++-...+.|.+.++.....    .............+++.|..+.++.+-.+ ..+.|...++........+. .-..
T Consensus       244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-~~~~  322 (420)
T 4gga_A          244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ  322 (420)
T ss_dssp             EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE-CSSC
T ss_pred             eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec-cccc
Confidence            444444567777777643221    11222334556788998888887776543 33567666665443333332 2345


Q ss_pred             ceeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875         636 PNGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       636 P~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      +..+++.+..+.|+.+-. ..+.|...++........+.+  ....-.+|++. .+.+++|-...+.|..-+.++.
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g--H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            677888888888887754 457888888765544433432  23345677774 4555555555555555454443

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=89.71  E-value=0.31  Score=44.99  Aligned_cols=18  Identities=28%  Similarity=0.517  Sum_probs=13.6

Q ss_pred             CCccc-cCCCCCccCCCcc
Q psy8875         199 PKISC-ACPEGLKLLPDLL  216 (734)
Q Consensus       199 ~~~~C-~C~~G~~~~~~~~  216 (734)
                      +.+.| .|+.||.|..+++
T Consensus        16 g~~~C~~C~~g~~G~~Ce~   34 (162)
T 1klo_A           16 KEVVCTHCPTGTAGKRCEL   34 (162)
T ss_dssp             CCEEECSCCTTEESTTSCE
T ss_pred             CCEEeCCCCCCCcCCCCcC
Confidence            45678 6888888887764

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=89.58  E-value=22  Score=37.16  Aligned_cols=161  Identities=9%  Similarity=0.028  Sum_probs=87.0

Q ss_pred             ceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCC-------------CCccceeeeccC-CcEEEEeCCC
Q psy8875         504 SATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDK-------------TIADGLAVDWIY-SHIYWTDAHK  568 (734)
Q Consensus       504 ~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~-------------~~p~glAvD~~~-~~lY~td~~~  568 (734)
                      ...+|.+++. .+.||+... .+.|++.. ++|..-+.+.. .+             ..+..|++|+.. +.||+...  
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~-~ggl~~s~-DgG~tW~~~~~-~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~--  252 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMS-SGGVFEST-DAGTDWKPLNR-GCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH--  252 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEE-TBEEEEES-STTSSCEECCT-TCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET--
T ss_pred             ceeEEEECCCCCCEEEEEEC-CCCEEEEC-CCCCCceECCC-CccccccCCCccccCcceeEEEECCCCCCEEEEEcC--
Confidence            3467888874 467877643 34577654 44443332211 11             125678888764 56777653  


Q ss_pred             CeEEEEeCCCCceEEEEcCCCC-----CceeEEEeCC-CCeEEEEec-----------CCCceEEEeccCCCceEEEEEc
Q psy8875         569 NTIELANFEGTMRKVLVRSYLD-----EPRSLALNPI-DGWMYWSDW-----------GQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~-----~P~~iavD~~-~g~LYwtd~-----------~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      +.|++..-.|..-+.+. ..+.     ....|++||. .+.||+.-.           +....|++..-.|..-+.+ ..
T Consensus       253 ~gl~~s~D~G~tW~~~~-~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~-~~  330 (394)
T 3b7f_A          253 CGIYRMDRREGVWKRIG-DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQ-DR  330 (394)
T ss_dssp             TEEEEEETTTTEEECGG-GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEE-CB
T ss_pred             CeEEEeCCCCCcceECC-CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceEC-CC
Confidence            55777765555443332 2122     2346888874 467777531           1124677765444443333 23


Q ss_pred             CCCC--------ceeEEEecCC-CeEEEEeCCCCeEEEEecCCCceEEEE
Q psy8875         632 DIKW--------PNGLTLDLVQ-RRLYWVDAKLNEISSCDYNGGNRRLVL  672 (734)
Q Consensus       632 ~l~~--------P~glavD~~~-~~LYw~D~~~~~I~~~~~dG~~~~~i~  672 (734)
                      .+..        ..+|++|+.+ ++||+.. ..+.|++..-.|..=+.+.
T Consensus       331 glp~~~~~~~~~~~~~~~~p~~~~~l~~g~-~~g~l~~S~D~G~tW~~~~  379 (394)
T 3b7f_A          331 GLPTDQAWLTVKRQAMTADAHAPVGVYFGT-TGGEIWASADEGEHWQCIA  379 (394)
T ss_dssp             TSCCSSCCCCCCTBSEEECCSSSCCEEEEC-TTSCEEEESSTTSBCEEEE
T ss_pred             CCCCccccceEEEEEEEECCCCCCEEEEEe-CCCeEEEECCCCCCceEcc
Confidence            3322        1368888765 4677653 3456777655565555443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=89.55  E-value=22  Score=37.07  Aligned_cols=77  Identities=5%  Similarity=-0.084  Sum_probs=51.3

Q ss_pred             CcceEEEeeec-------cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEE
Q psy8875         502 TKSATAIDFVF-------RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELA  574 (734)
Q Consensus       502 ~~~~~~i~~d~-------~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~  574 (734)
                      ...+.+|+|.+       ..+++..+-...+.|+.-++..+.....+.. .-..+..+++.+...++..+-...+.|.+.
T Consensus       136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~-~~~~v~~v~~~p~~~~~l~~~~~d~~v~~w  214 (393)
T 4gq1_A          136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP-LSSPGISVQFRPSNPNQLIVGERNGNIRIF  214 (393)
T ss_dssp             SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE-CSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC-CCCCcEEEEECCCCCceEEecCCCCEEEEE
Confidence            34578888875       2466777777788888888764433333333 334566788877766677777777889888


Q ss_pred             eCCCC
Q psy8875         575 NFEGT  579 (734)
Q Consensus       575 ~ldG~  579 (734)
                      ++...
T Consensus       215 d~~t~  219 (393)
T 4gq1_A          215 DWTLN  219 (393)
T ss_dssp             ETTCC
T ss_pred             ECCCC
Confidence            87543

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=89.48  E-value=0.36  Score=39.90  Aligned_cols=57  Identities=26%  Similarity=0.634  Sum_probs=44.6

Q ss_pred             cccc-CCCcceeecCCCcEecCCCCccccc--cCcCCC-CCccc--ceeccC-----CceEEecCCCeee
Q psy8875         402 KCVD-LPVGYMCECNEGYKLSSNRHTCIDI--DECETP-GSCSQ--ICLNEK-----GGFKCECVAGYIK  460 (734)
Q Consensus       402 ~C~~-~~~~~~C~C~~G~~l~~~~~~C~~~--~eC~~~-~~C~~--~C~n~~-----g~~~C~C~~gy~~  460 (734)
                      .|.+ .++.++|.|.+||+.  ++..|+.+  +.|+.. +.|..  .|+...     +...|.|.+||.-
T Consensus        17 ~C~r~~~g~e~C~C~~gy~g--dg~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C           17 GCFRHLDEREECKCLLNYKQ--EGDKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             EEECCTTSCCEEEECTTEEE--ETTEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred             CeEEcCCCCEEEEecCCeec--CCCeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcc
Confidence            5666 578899999999987  67889876  578754 78854  788774     5689999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=88.40  E-value=21  Score=35.25  Aligned_cols=231  Identities=9%  Similarity=-0.013  Sum_probs=115.8

Q ss_pred             eeeeeeccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccce
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGL  552 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~gl  552 (734)
                      .|.++.++.|+.-++.......++.   ....+.+|+|.+..+ ++.+-...+.|...++..+.....+ ...  ...-.
T Consensus        38 ~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~-~l~sgs~Dg~v~iw~~~~~~~~~~~-~~h--~~~~~  113 (318)
T 4ggc_A           38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNM-TSH--SARVG  113 (318)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE-ECC--SSCEE
T ss_pred             EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCC-EEEEEECCCcEEEeecCCceeEEEe-cCc--cceEE
Confidence            3444455666666666555444332   234578899987554 4455566788888888754332222 222  22233


Q ss_pred             eeeccCCcEEEEeCCCCeEEEEeCCCCceE-EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC-Cce---EE
Q psy8875         553 AVDWIYSHIYWTDAHKNTIELANFEGTMRK-VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG-SHR---NM  627 (734)
Q Consensus       553 AvD~~~~~lY~td~~~~~I~~~~ldG~~~~-~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG-~~~---~~  627 (734)
                      ++.+.. .+..+-...+.+........... ..+.........+++.+...+|+-...  .+.|...++.. ...   ..
T Consensus       114 ~~~~~~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~  190 (318)
T 4ggc_A          114 SLSWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN--DNLVNVWPSAPGEGGWVPLQ  190 (318)
T ss_dssp             EEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEESSCBTTBSCCSE
T ss_pred             EeecCC-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec--CcceeEEECCCCccccccee
Confidence            444333 44455555566666665543332 233344556677778776555554442  34555544432 111   11


Q ss_pred             EEEcCCCCceeEEEecCCCeEEEE--eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEe-CCCCceE
Q psy8875         628 VIVSDIKWPNGLTLDLVQRRLYWV--DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSD-WQQKAIY  702 (734)
Q Consensus       628 lv~~~l~~P~glavD~~~~~LYw~--D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd-~~~~~v~  702 (734)
                      ...........+++.+....+.+.  ....+.|...+............   ......+.+  .++.++.+. ...+.|+
T Consensus       191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~~d~~i~  267 (318)
T 4ggc_A          191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLV  267 (318)
T ss_dssp             EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEE
T ss_pred             eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccccceEEEEEcCCCEEE
Confidence            111222334556666555555443  23445666666655544433321   122233333  344554443 2345666


Q ss_pred             EEeccCCCceEEEe
Q psy8875         703 KANKFTGDNLTAIT  716 (734)
Q Consensus       703 ~~~~~~G~~~~~l~  716 (734)
                      ..+..+++.+..+.
T Consensus       268 iwd~~~~~~~~~l~  281 (318)
T 4ggc_A          268 IWKYPTMAKVAELK  281 (318)
T ss_dssp             EEETTTCCEEEEEC
T ss_pred             EEECCCCcEEEEEc
Confidence            66666666655554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=88.23  E-value=24  Score=38.87  Aligned_cols=161  Identities=3%  Similarity=-0.173  Sum_probs=85.4

Q ss_pred             CcceEEEeeecc-----CCeEEEEEeCCCcEEEEecCCCCce---E-------EEEeCCCCCccceeeeccCCcEEEEeC
Q psy8875         502 TKSATAIDFVFR-----TGMIFWSDISEKKIYKAPIDEGSER---T-------VVIEEDKTIADGLAVDWIYSHIYWTDA  566 (734)
Q Consensus       502 ~~~~~~i~~d~~-----~~~lyw~d~~~~~I~~~~l~~g~~~---~-------~~~~~~~~~p~glAvD~~~~~lY~td~  566 (734)
                      ...+..|+|.+.     .+.+..+-...+.|...++..+...   .       ..+......+..+++.  ...+.++-.
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s--~~~~lasgs  284 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL--SPTTVVCGF  284 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES--SSSEEEEEE
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec--CCCeEEEEe
Confidence            456788999875     2345555556777877777644211   0       1111111233444443  334556666


Q ss_pred             CCCeEEEEeCCCC-ceEEEEcCCCCCceeEEE-eCCCC-eEEEEecCCCceEEEeccCC-CceEEEEE-cCCCCceeEEE
Q psy8875         567 HKNTIELANFEGT-MRKVLVRSYLDEPRSLAL-NPIDG-WMYWSDWGQNAKIERAGMDG-SHRNMVIV-SDIKWPNGLTL  641 (734)
Q Consensus       567 ~~~~I~~~~ldG~-~~~~l~~~~l~~P~~iav-D~~~g-~LYwtd~~~~~~I~~~~ldG-~~~~~lv~-~~l~~P~glav  641 (734)
                      ..+.|.+.++... .....+........+|++ -+..+ .++.+-. ..+.|...++.. ....++.. ........|++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~f  363 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVY  363 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-cCCeEEEEECCCCCcccccccccccCcccceEe
Confidence            6789999998743 332333344455677742 23444 6666653 335666666532 22222221 11122457888


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCC
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .+.... +.+-...+.|...++...
T Consensus       364 sp~~~~-l~s~~~d~tv~lwd~~~~  387 (524)
T 2j04_B          364 CPQIYS-YIYSDGASSLRAVPSRAA  387 (524)
T ss_dssp             ETTTTE-EEEECSSSEEEEEETTCT
T ss_pred             CCCcCe-EEEeCCCCcEEEEECccc
Confidence            765444 555445566777775543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=87.83  E-value=26  Score=35.84  Aligned_cols=190  Identities=8%  Similarity=-0.005  Sum_probs=95.3

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCC-c-eE
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGT-M-RK  582 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~-~-~~  582 (734)
                      ...+++.+..+.+.++....+.|...++..+.....+ . ....+.+++++  ...++++.  .+.|.+.++... . ..
T Consensus        61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~-~-~~~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~  134 (355)
T 3vu4_A           61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI-K-VDAPVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRIT  134 (355)
T ss_dssp             CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE-E-CSSCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSS
T ss_pred             eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE-E-CCCceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeE
Confidence            3445555556667666555667777777644332222 2 22234455554  44555553  367888887654 1 11


Q ss_pred             EEEcCCCCCcee-EEEeCCCCeEEEEecCCCceEEEeccCCCc----------------eEEEEEcCCCCceeEEEecCC
Q psy8875         583 VLVRSYLDEPRS-LALNPIDGWMYWSDWGQNAKIERAGMDGSH----------------RNMVIVSDIKWPNGLTLDLVQ  645 (734)
Q Consensus       583 ~l~~~~l~~P~~-iavD~~~g~LYwtd~~~~~~I~~~~ldG~~----------------~~~lv~~~l~~P~glavD~~~  645 (734)
                      .+.     .|.+ +++.+  .+|.++.....+.|...++....                ....+.........|++.+.+
T Consensus       135 ~~~-----~~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g  207 (355)
T 3vu4_A          135 DDI-----RFGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS  207 (355)
T ss_dssp             CCE-----EEEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred             Eec-----cCCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence            111     1333 33433  44555422234566666655422                012233334456789998655


Q ss_pred             CeEEEEeCCCCe-EEEEecCCC-ceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCC
Q psy8875         646 RRLYWVDAKLNE-ISSCDYNGG-NRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       646 ~~LYw~D~~~~~-I~~~~~dG~-~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G  709 (734)
                      .+| .+-+..+. |...++... ...++... .......+|++. .+.++.+-...+.|...+..++
T Consensus       208 ~~l-~s~s~d~~~v~iwd~~~~~~~~~~~~g-~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          208 DMV-ATCSQDGTIIRVFKTEDGVLVREFRRG-LDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             SEE-EEEETTCSEEEEEETTTCCEEEEEECT-TCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             CEE-EEEeCCCCEEEEEECCCCcEEEEEEcC-CCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            444 45445566 888887644 34444311 122344567773 3444455444466665554443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=87.70  E-value=26  Score=35.63  Aligned_cols=191  Identities=13%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC-CCceE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE-GTMRK  582 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld-G~~~~  582 (734)
                      .+.+|++.. .+.+|.+. ..+.|++. .|+|..-+.+.........+|++++ .+.+|.+.. .+.|++..-. |..-+
T Consensus       123 ~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~  197 (327)
T 2xbg_A          123 SPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWE  197 (327)
T ss_dssp             CEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCE
T ss_pred             CeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCcee
Confidence            456666543 46677664 35667774 4545444333322223455677765 345555443 4667776543 55544


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-CC---CceeEEEecCCCeEEEEeCCCCeE
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-IK---WPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-l~---~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      .+..........|++++. +.+|.+..  .+.|++...|+...-..+... +.   ...+|+++. .+.||.+-. .+.|
T Consensus       198 ~~~~~~~~~~~~~~~~~~-g~~~~~~~--~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          198 PHNRTTSRRLHNMGFTPD-GRLWMIVN--GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL  272 (327)
T ss_dssp             EEECCSSSCEEEEEECTT-SCEEEEET--TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE
T ss_pred             ECCCCCCCccceeEECCC-CCEEEEeC--CceEEEecCCCCCeeEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE
Confidence            443333345678888764 56766552  356766655532221111111 11   123455543 567776654 4556


Q ss_pred             EEEecC-CCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEe
Q psy8875         659 SSCDYN-GGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       659 ~~~~~d-G~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~  705 (734)
                      ++. .| |..-+.+...........+|++..+..+|+-...+.|++.+
T Consensus       273 ~~S-~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          273 LCS-QDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEE-SSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             EEe-CCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            554 45 44333332111111234567664333455555566777664

>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}

Probab=87.45  E-value=44  Score=37.99  Aligned_cols=131  Identities=11%  Similarity=-0.008  Sum_probs=73.8

Q ss_pred             cceeeeccCC-cEEEEeCC-----CCeEEEEeCCCCceEEEEcCCCCCc-eeEEEeCCCC-eEEEEecCCCceEEEeccC
Q psy8875         550 DGLAVDWIYS-HIYWTDAH-----KNTIELANFEGTMRKVLVRSYLDEP-RSLALNPIDG-WMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       550 ~glAvD~~~~-~lY~td~~-----~~~I~~~~ldG~~~~~l~~~~l~~P-~~iavD~~~g-~LYwtd~~~~~~I~~~~ld  621 (734)
                      .+|++|+... +||++-..     .+.|++..=.|..-+.+.. . ..| ..|+++|.+. .||+..  ..+.|++..-.
T Consensus        93 ~~IavdP~dp~~vyvag~~~~~~~~g~v~rS~DgG~TW~~~~~-p-~~~~~~l~~~P~~~~~l~a~~--~~~gly~S~Dg  168 (685)
T 3f6k_A           93 FGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDL-P-FHPLTQMMYSPQNSDYLLALS--TENGLWVSKNF  168 (685)
T ss_dssp             GCEEECSTTCCCEEEEECCCTTCSSCEEEEESSTTSSCEEEEC-S-SCBSSCCEEETTEEEEEEEEB--TTCCEEEESST
T ss_pred             eEEEECCCCCCEEEEEEeccCCCCCceEEEECCCCceeEeccC-C-CCCceEEEEecCCCCEEEEEE--CCCCEEEEeCC
Confidence            5799998754 78888642     4677776655655444431 1 233 3799999754 567664  24678886544


Q ss_pred             CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-------C--eEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEE
Q psy8875         622 GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-------N--EISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLY  692 (734)
Q Consensus       622 G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-------~--~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~ly  692 (734)
                      |. .-..+...+.   ...++ ..+.|||.-...       +  .|.+.+-.|...+++.      ....++++.+++|+
T Consensus       169 G~-TW~~i~~~v~---~~~f~-~~~~Iy~~~~~~~~~~~~~g~l~L~~S~D~g~t~~~l~------~~i~~f~~~~~yl~  237 (685)
T 3f6k_A          169 GG-KWEEIHKAVC---LAKWG-SDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG------VKIYSFGLGGRFLF  237 (685)
T ss_dssp             TS-SEEEEESSEE---EEEEC-STTCEEEEECSSSCTTTTTTSEEEEEESSTTSSCEEEE------EEEEEEEEETTEEE
T ss_pred             CC-CcEEeecCcc---ccccC-CCCeEEEEeeccccccCCCCceEEEEecCCCCCceEee------ccceeeeeeeeEEE
Confidence            44 4334444432   23343 356788874221       2  2333222233444433      23456777888888


Q ss_pred             EEe
Q psy8875         693 WSD  695 (734)
Q Consensus       693 wtd  695 (734)
                      ++-
T Consensus       238 va~  240 (685)
T 3f6k_A          238 ASV  240 (685)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=86.75  E-value=44  Score=37.24  Aligned_cols=79  Identities=8%  Similarity=-0.007  Sum_probs=45.1

Q ss_pred             eEEEecCCCeEEEEeCC-----------------------CCeEEEEecCCCceEEEEcCCC-------CCCCCeEEEEE
Q psy8875         638 GLTLDLVQRRLYWVDAK-----------------------LNEISSCDYNGGNRRLVLYSPQ-------TLSHPFSISTF  687 (734)
Q Consensus       638 glavD~~~~~LYw~D~~-----------------------~~~I~~~~~dG~~~~~i~~~~~-------~~~~P~gl~v~  687 (734)
                      .+++|+..++||+....                       .+.|..++.+....+-..+...       ....|.-+...
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~  329 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYK  329 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeee
Confidence            47899999999998731                       1578888875444433332110       12344433331


Q ss_pred             --CC---EEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         688 --ED---WLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       688 --~~---~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                        ++   .+++.-..++.|+.+++.+|+.+..+.
T Consensus       330 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~  363 (582)
T 1flg_A          330 AKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFP  363 (582)
T ss_dssp             CSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEEEECCCceEEEEECCCCCEecccc
Confidence              23   244444455777777777777665543

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=86.65  E-value=0.12  Score=37.75  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=24.4

Q ss_pred             CcccCCCcccC----CCCCccccCCCCCccCCCcc
Q psy8875         186 HLCLPAPQINA----HSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       186 ~~C~~~~~~~~----~~~~~~C~C~~G~~~~~~~~  216 (734)
                      .+|+|+++|..    ..+.|.|.|++||.|..++.
T Consensus        14 ~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce~   48 (52)
T 3ca7_A           14 WYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY   48 (52)
T ss_dssp             HTSCTTCEEEEEEETTEEEEEEECCTTEESTTSCE
T ss_pred             CcCCCCCEEecCccCCCCCEEEECCCCCcCCCCcc
Confidence            36888888874    34578999999999987764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=86.54  E-value=26  Score=34.45  Aligned_cols=216  Identities=8%  Similarity=-0.010  Sum_probs=110.7

Q ss_pred             cceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+.-++....... +.........++.+  . .+..+....+.+.......+......+.........+++.+.. ++
T Consensus        89 g~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~-~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  164 (318)
T 4ggc_A           89 AEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RH  164 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SE
T ss_pred             CcEEEeecCCceeEEEecCccceEEEeecC--C-CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CE
Confidence            344444554333222 22222334444443  3 3344444455555555543333333333344455666776444 44


Q ss_pred             EEEeCCCCeEEEEeCCCCce----EEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCc
Q psy8875         562 YWTDAHKNTIELANFEGTMR----KVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWP  636 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~----~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P  636 (734)
                      +++-...+.|.+.++.....    .............++..+....++++..+ ....|...++......... ......
T Consensus       165 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v  243 (318)
T 4ggc_A          165 LASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQV  243 (318)
T ss_dssp             EEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCE
T ss_pred             EEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeee
Confidence            55555567888887753221    11222333455778888877777665433 3345655555544333322 333446


Q ss_pred             eeEEEecCCCeEEEEeC-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEe
Q psy8875         637 NGLTLDLVQRRLYWVDA-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~  705 (734)
                      ..+++.+..+.|+.+-. ..+.|...++........+..  ....-.+|++. .+.+++|-...+.|..-+
T Consensus       244 ~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--H~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          244 CSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--HTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             eeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            67788878888877653 467888888765544433432  23334567773 344444444445444433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=85.25  E-value=48  Score=36.82  Aligned_cols=129  Identities=8%  Similarity=0.002  Sum_probs=80.0

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc------eEEEEeC----CCCCccceeeeccCCcEEEEeCCCCeEEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE------RTVVIEE----DKTIADGLAVDWIYSHIYWTDAHKNTIEL  573 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~------~~~~~~~----~~~~p~glAvD~~~~~lY~td~~~~~I~~  573 (734)
                      ...+|+|.+..+.|+... ..+.|...++.++..      ....+..    ....+..||+-+.+   +.+-...+.|.+
T Consensus       131 sv~svafSPDG~~LAsgs-~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrl  206 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGN-EDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFS  206 (588)
T ss_dssp             CEEEEEECSSSSCEEEEE-TTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEE
T ss_pred             cEEEEEEcCCCCEEEEEc-CCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEE
Confidence            478999999887777664 577788888875532      1112211    12355666666433   556666788999


Q ss_pred             EeCCCCceE----EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875         574 ANFEGTMRK----VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       574 ~~ldG~~~~----~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav  641 (734)
                      .++++....    ++.........++++.  ..+|--+.   .+.|...+..+....++.........+|++
T Consensus       207 Wd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~va~  273 (588)
T 2j04_A          207 MTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHIIPL  273 (588)
T ss_dssp             ECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEEEE
T ss_pred             EECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEEEe
Confidence            999876632    2322334567888886  34444442   368888888876664444344555667777

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=84.94  E-value=0.63  Score=42.89  Aligned_cols=38  Identities=21%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             eccCCCCeeeCCCCCCCCCC-CCCCCCCcCCCCCCCcccccC
Q psy8875         100 TCRSSPGECVPLTWMCDDNP-DCSDGSDEKSCKNRTCQASEF  140 (734)
Q Consensus       100 ~C~~~~~~Ci~~~~~Cdg~~-dC~dg~de~~C~~~~C~~~~f  140 (734)
                      +|.++ +.|++....=.++. +|+.++...+|+  .|.+..|
T Consensus         2 ~C~~~-g~C~~~~~~g~~~C~~C~~g~~G~~Ce--~C~~g~~   40 (162)
T 1klo_A            2 PCPGG-SSCAIVPKTKEVVCTHCPTGTAGKRCE--LCDDGYF   40 (162)
T ss_dssp             CSCTT-CCEEECSSSCCEEECSCCTTEESTTSC--EECTTEE
T ss_pred             cCcCc-CcccccCCCCCEEeCCCCCCCcCCCCc--CCCCCCc
Confidence            46665 67876542111233 688888888885  4665544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=83.87  E-value=19  Score=39.59  Aligned_cols=157  Identities=8%  Similarity=-0.021  Sum_probs=88.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec-cCC-cEEEEeCCCCeEEEEeCCCC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW-IYS-HIYWTDAHKNTIELANFEGT  579 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~-~~~-~lY~td~~~~~I~~~~ldG~  579 (734)
                      ...+.+++|.+. + +..+-..++.|...++..+......+......+.+|++.+ ..+ +++.+-+..+.|.+.++...
T Consensus       266 ~~~v~sv~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          266 DSLITTFDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             TTCEEEEEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred             CCCEEEEEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence            356778888753 3 4555567788988888754332222332334566674332 334 78888888899999988542


Q ss_pred             -ceEEEEc-CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc-eEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         580 -MRKVLVR-SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH-RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       580 -~~~~l~~-~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~-~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                       ...++.. ........|++.|... .+.+-. ....|...++.... ..++ .......++|++.+.+..| .+-+..+
T Consensus       344 ~~~~~~~~~~~~~~v~~v~fsp~~~-~l~s~~-~d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l-~Sgs~Dg  419 (524)
T 2j04_B          344 ATTKTTVSRFRGSNLVPVVYCPQIY-SYIYSD-GASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLHPMV-LAGSADG  419 (524)
T ss_dssp             HHHCEEEEECSCCSCCCEEEETTTT-EEEEEC-SSSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSCCBC-EEEETTT
T ss_pred             CcccccccccccCcccceEeCCCcC-eEEEeC-CCCcEEEEECcccccceee-ecCCCceEEEEeCCCCCeE-EEEECCC
Confidence             2223321 1112357899998644 444432 23456555554332 2333 3344567788887655444 4444456


Q ss_pred             eEEEEecC
Q psy8875         657 EISSCDYN  664 (734)
Q Consensus       657 ~I~~~~~d  664 (734)
                      .|...++.
T Consensus       420 tv~lwd~~  427 (524)
T 2j04_B          420 SLIITNAA  427 (524)
T ss_dssp             EEECCBSC
T ss_pred             EEEEEech
Confidence            66655543

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=83.85  E-value=0.73  Score=44.64  Aligned_cols=87  Identities=23%  Similarity=0.522  Sum_probs=49.0

Q ss_pred             cccCCCCCccCCCccccccCC----CCCCCCC-Cceee-CCCceecCcCCCCCCCCCCCC------CCCCCCC---CCCC
Q psy8875         202 SCACPEGLKLLPDLLMCAEAG----SKPCRNS-TMFRC-TGGMCIPSTWVCDGQNDCPDG------VDEKKCH---ETCR  266 (734)
Q Consensus       202 ~C~C~~G~~~~~~~~~~~~~~----~~~C~~~-~~~~C-~~g~Ci~~~~~Cdg~~dC~dg------~de~~C~---~~C~  266 (734)
                      .|.|++||.|..++.......    ...|... ..-.| ..|+|+.  ..|.    |..|      +.+..|+   ..|.
T Consensus       108 ~C~C~~G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~--g~C~----C~~gw~~~~~~~G~~Ce~~~~~C~  181 (217)
T 2p28_B          108 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC--GQCL----CHTSDVPGKLIYGQYCECDTINCE  181 (217)
T ss_dssp             EEEECTTEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEEET--TEEE----ECCCCSTTCCEESTTSCEESSCSC
T ss_pred             EEECCCCccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEEeC--CceE----CCCCCCCcccEECCCcccCCccCC
Confidence            577777777777663211100    0122210 11234 2457764  2454    8888      5777886   3575


Q ss_pred             CC-ceecCC---CCeecCCcccCCCCCCCCCCCCCCCC
Q psy8875         267 SD-EFTCAN---GNCIQRIWLCDGDDDCKDGSDEKSCQ  300 (734)
Q Consensus       267 ~~-~~~C~~---g~Ci~~~~~Cdg~~dC~dgsDe~~C~  300 (734)
                      .. ...|.+   |+|+..  .|    .|..|+.+..|+
T Consensus       182 ~~~g~~C~~~~~G~C~~g--~C----~C~~G~~G~~C~  213 (217)
T 2p28_B          182 RYNGQVCGGPGRGLCFCG--KC----RCHPGFEGSACQ  213 (217)
T ss_dssp             EETTEETTCTTTEEEETT--EE----EECTTEESTTSC
T ss_pred             CCCCCCCCCCCCcEEeCC--ee----ECCCCCccCCcC
Confidence            42 335764   678853  56    788888888886

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=82.67  E-value=0.2  Score=37.45  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             cccCCCccc--C--CCCCccccCCCCCccCCCccc
Q psy8875         187 LCLPAPQIN--A--HSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       187 ~C~~~~~~~--~--~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      +|+|+++|.  +  ....+.|.|++||.|..|+..
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce~~   49 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCEYK   49 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSCEE
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCccc
Confidence            688888886  3  345689999999999887653

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=82.19  E-value=73  Score=36.77  Aligned_cols=188  Identities=15%  Similarity=0.053  Sum_probs=97.3

Q ss_pred             EEeeeccCCeEEEEEeC--CCcEEEEecCCCCceEEEEeCCCCC-ccceeeeccCCc-EEEEeCCCCeEEEEeCCCCceE
Q psy8875         507 AIDFVFRTGMIFWSDIS--EKKIYKAPIDEGSERTVVIEEDKTI-ADGLAVDWIYSH-IYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       507 ~i~~d~~~~~lyw~d~~--~~~I~~~~l~~g~~~~~~~~~~~~~-p~glAvD~~~~~-lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      .+++++....+.|+-..  ...|++. .+.|..-+.+ . .+.. ...|++|+.+.+ ||...  .+.|++..=.|..-+
T Consensus       548 ~i~v~~~~~~~~~~~~~~~~~~v~~S-~D~G~tW~~~-~-~l~~~~~~i~~d~~~~~~~y~g~--~g~v~~S~DgG~tW~  622 (763)
T 3a0f_A          548 TIAVGADGKTFVWSPSKADGKGPYTS-SDYGKTWTAP-S-GLSKQTTGIAADRVQANTFYVYV--EGDFFVSTDGGKSYT  622 (763)
T ss_dssp             EEEECTTSSCEEEECSSCCSSCCEEE-SSTTSCCBCC-B-SCCCCCSCEEECSSSTTCEEEEE--TTEEEEESSTTSBCE
T ss_pred             eEEEecCCCcEEEEecccCCCceEEe-CCCCCCCeec-C-CCCCCcceEEEeccCCCEEEEEc--CCCEEEEeCCCcCcc
Confidence            44445445555555432  4467764 3544432222 2 2322 247888887655 55553  477877654455444


Q ss_pred             EEEcCCCC----CceeEEEeC-CCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCC-c----e--eEEEe-cCCCeEE
Q psy8875         583 VLVRSYLD----EPRSLALNP-IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKW-P----N--GLTLD-LVQRRLY  649 (734)
Q Consensus       583 ~l~~~~l~----~P~~iavD~-~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~-P----~--glavD-~~~~~LY  649 (734)
                      .+. ..+.    .+.-|+++| ..+.||.+-.  ...|++..-.|..-+.+.  .+.. .    .  ++++. .....||
T Consensus       623 ~~~-~~lp~~~~~~~~i~~~~~~~~~l~~~~~--~~~l~~S~D~G~tW~~~~--~~~~~~~~~~~~~g~~~~~~~~~~l~  697 (763)
T 3a0f_A          623 KKG-NGLPCCWTYTGTPVTSNLRAGELWVSVK--GVGIYHSTDFGNTFTALA--GSGSSLNPAVFSIGAPQTPNATETLF  697 (763)
T ss_dssp             EEC-BTSCCSSCCCEEEEECSSSTTCEEEEET--TTEEEEESSTTSBCEECT--TBTTTBEEEEEEEECCSSTTSSCEEE
T ss_pred             ccc-cCCCcccCccccEEECCCCCCcEEEEcC--CCeEEEEcCCCCCceEcc--CCCcccccceeEEeeecCCCCCceEE
Confidence            442 2332    222278887 5678888763  347888765555444332  2211 1    1  22222 2245788


Q ss_pred             EEe---C-CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCEEEEEeCCCCceEEEe
Q psy8875         650 WVD---A-KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       650 w~D---~-~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~lywtd~~~~~v~~~~  705 (734)
                      ++-   . ....|++..-.|..=+.+-.....++.+..|++.   .++||++..+.+ |+..+
T Consensus       698 ~~G~~~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~i~~~p~~~~~v~~~T~GrG-i~~g~  759 (763)
T 3a0f_A          698 LWGIPSASQPEGLYMSTDNGGLWTRLNDDAHNYGGATVISGDPRIYGRVYIGMNGRG-IICAQ  759 (763)
T ss_dssp             EEEECSTTSCSEEEEESSTTSCCEECSCTTCCTBCEEEEEECTTSTTEEEEEEBSSC-EEEEE
T ss_pred             EEEEcccCCCcEEEEeCCCCCCcEeccCccccCCCcceEEeCCCCCCEEEEeCCCCe-EEEEe
Confidence            764   1 3456777655555544443221223444456664   467999877654 55443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.45  E-value=50  Score=33.63  Aligned_cols=145  Identities=6%  Similarity=-0.109  Sum_probs=71.5

Q ss_pred             CeEEEEeCCCCceEEEEcCCCCCc--eeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCce---e
Q psy8875         569 NTIELANFEGTMRKVLVRSYLDEP--RSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWPN---G  638 (734)
Q Consensus       569 ~~I~~~~ldG~~~~~l~~~~l~~P--~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P~---g  638 (734)
                      ..+++.++....-+.+........  .++++  .+++||+.--.     ....|++.++|-...+-.....+..|.   +
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~--~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN--KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE--ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE--ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            578899987665554432211111  23333  47889988410     124567776642222211112333332   2


Q ss_pred             EEEecCCCeEEEEeCCC----------------------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeC
Q psy8875         639 LTLDLVQRRLYWVDAKL----------------------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDW  696 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~----------------------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~  696 (734)
                      .++-..+++||+.-...                      ..|+.+++....=+.+...+.. ..-.++++.+++||+.--
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG  324 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGG  324 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEee
Confidence            22223588999885311                      2577778765543444322111 112356668999999743


Q ss_pred             C------CCceEEEeccCCCceEEEe
Q psy8875         697 Q------QKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       697 ~------~~~v~~~~~~~G~~~~~l~  716 (734)
                      .      .+.|+++...+++.++...
T Consensus       325 ~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          325 ETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             ECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            2      1346666666666555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=81.10  E-value=50  Score=33.44  Aligned_cols=199  Identities=10%  Similarity=0.008  Sum_probs=99.7

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-CC-CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-DK-TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~~-~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+|++++  +.+|.+. ..+.|++ ..|+|..-+.+... .+ ..+..|++. ..+.+|++.. .+.|++..=.|..-
T Consensus        81 ~~~~i~~~~--~~~~~~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~-~g~v~~S~DgG~tW  154 (327)
T 2xbg_A           81 RFNSVSFQG--NEGWIVG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKAL-GNGSAEMITN-VGAIYRTKDSGKNW  154 (327)
T ss_dssp             EEEEEEEET--TEEEEEE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEE-ETTEEEEEET-TCCEEEESSTTSSE
T ss_pred             cEEEEEecC--CeEEEEE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEE-CCCCEEEEeC-CccEEEEcCCCCCC
Confidence            456788874  6777653 3456776 55655443332211 11 234556654 3466776654 45677765446555


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC-CCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD-GSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISS  660 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld-G~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~  660 (734)
                      +.+.........++++++. +.+|...  ..+.|++..-+ |..-+.+-...-.....|++++ .++||.+-. .+.|++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~-~~~~~~g--~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~-~g~~~~~~~-~G~~~~  229 (327)
T 2xbg_A          155 QALVQEAIGVMRNLNRSPS-GEYVAVS--SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTP-DGRLWMIVN-GGKIAF  229 (327)
T ss_dssp             EEEECSCCCCEEEEEECTT-SCEEEEE--TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECT-TSCEEEEET-TTEEEE
T ss_pred             EEeecCCCcceEEEEEcCC-CcEEEEE--CCCcEEEEeCCCCCceeECCCCCCCccceeEECC-CCCEEEEeC-CceEEE
Confidence            5554333345678888874 5555544  24678877644 4444433222223446777764 556765543 355665


Q ss_pred             EecC-CCceEEEEcCCCCC--CCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         661 CDYN-GGNRRLVLYSPQTL--SHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       661 ~~~d-G~~~~~i~~~~~~~--~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ...| |..-+.+ ..+...  ...++|++. ++.||.+.. .+.|++- ...|+.-+.+.
T Consensus       230 s~~D~G~tW~~~-~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i~~S-~DgG~tW~~~~  286 (327)
T 2xbg_A          230 SDPDNSENWGEL-LSPLRRNSVGFLDLAYRTPNEVWLAGG-AGALLCS-QDGGQTWQQDV  286 (327)
T ss_dssp             EETTEEEEECCC-BCTTSSCCSCEEEEEESSSSCEEEEES-TTCEEEE-SSTTSSCEECG
T ss_pred             ecCCCCCeeEec-cCCcccCCcceEEEEecCCCEEEEEeC-CCeEEEe-CCCCcccEEcC
Confidence            4344 2221111 111000  112445543 456666544 3445443 34455555443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=81.06  E-value=51  Score=33.56  Aligned_cols=168  Identities=10%  Similarity=-0.015  Sum_probs=87.6

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCC-CceEEEEeCCCCCccc-eeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEG-SERTVVIEEDKTIADG-LAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g-~~~~~~~~~~~~~p~g-lAvD~~~~~l  561 (734)
                      .|+..++........+.....+.+++++  .+.++++.  .+.|+..++..+ .....+ .    .|.+ +++.+  +.|
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~-~----~~~~~~~~s~--~~l  150 (355)
T 3vu4_A           82 VVHIWDDVKKQDVSRIKVDAPVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRITDD-I----RFGGVCEFSN--GLL  150 (355)
T ss_dssp             EEEEEETTTTEEEEEEECSSCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSSCC-E----EEEEEEEEET--TEE
T ss_pred             EEEEEECCCCcEEEEEECCCceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeEEe-c----cCCceEEEEc--cEE
Confidence            4554455433332222333456777776  34454442  456777777644 111111 1    1222 33443  445


Q ss_pred             EEE-eCCCCeEEEEeCCCCc----------------eEEEEcCCCCCceeEEEeCCCCeEEEEecCCCce-EEEeccCCC
Q psy8875         562 YWT-DAHKNTIELANFEGTM----------------RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAK-IERAGMDGS  623 (734)
Q Consensus       562 Y~t-d~~~~~I~~~~ldG~~----------------~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~-I~~~~ldG~  623 (734)
                      .++ ....+.|.+.++....                ....+.........|++.|. |.++.+-. ..+. |...++...
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s-~d~~~v~iwd~~~~  228 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCS-QDGTIIRVFKTEDG  228 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEE-TTCSEEEEEETTTC
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEe-CCCCEEEEEECCCC
Confidence            444 4556788888886533                02233345567789999985 44444442 2355 666666533


Q ss_pred             ceEEEEE-c-CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC
Q psy8875         624 HRNMVIV-S-DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG  665 (734)
Q Consensus       624 ~~~~lv~-~-~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG  665 (734)
                      .....+. . .......|++.+.+.+|..+ ...+.|...++..
T Consensus       229 ~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~-s~d~~v~iw~~~~  271 (355)
T 3vu4_A          229 VLVREFRRGLDRADVVDMKWSTDGSKLAVV-SDKWTLHVFEIFN  271 (355)
T ss_dssp             CEEEEEECTTCCSCEEEEEECTTSCEEEEE-ETTCEEEEEESSC
T ss_pred             cEEEEEEcCCCCCcEEEEEECCCCCEEEEE-ECCCEEEEEEccC
Confidence            3322333 2 34556789998766655544 4456777777643

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=81.00  E-value=0.68  Score=47.03  Aligned_cols=31  Identities=45%  Similarity=0.978  Sum_probs=27.8

Q ss_pred             CCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         398 GCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       398 ~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      .|+|.|.+++++|.|.|.+||.|..++++|.
T Consensus       132 ~c~~~C~n~~g~~~csC~~Gy~L~~d~~~C~  162 (286)
T 1nt0_A          132 PCDHYCHXYLGGYYCSCRVGYILHQNKHTCS  162 (286)
T ss_dssp             CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cCCCccccccCceEeecCCCceeccCCCCcc
Confidence            5889999999999999999999988877774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	734
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	8e-69
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-07
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	5e-65
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-12
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-10
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	9e-09
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-12
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-10
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	9e-08
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	7e-07
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-12
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-11
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	9e-12
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-11
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	5e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	6e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-07
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-11
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-10
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	1e-11
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	6e-11
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-08
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	3e-11
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	1e-04
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	7e-11
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	2e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	8e-11
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	3e-08
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-05
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-10
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-09
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	3e-10
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-08
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	1e-07
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	4e-06
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	5e-06
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	4e-10
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	1e-07
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-10
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-09
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	5e-09
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	9e-09
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-06
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	5e-10
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	4e-05
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-10
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	7e-09
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-08
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	1e-09
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	1e-04
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	2e-04
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	1e-09
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-09
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	6e-09
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-07
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-07
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	1e-09
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	6e-08
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	1e-09
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	4e-05
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	2e-09
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	5e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	2e-09
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	2e-09
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	3e-08
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	5e-07
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	5e-07
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-09
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	8e-08
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	2e-07
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	1e-06
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	1e-06
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	7e-09
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	1e-04
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	8e-09
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	8e-09
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-08
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-06
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	1e-08
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	3e-05
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	2e-08
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	2e-06
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	3e-08
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	5e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	5e-08
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-04
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	9e-08
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	3e-04
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	2e-07
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	3e-04
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	3e-07
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	3e-06
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	7e-07
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	1e-04
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	3e-05
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	6e-04

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  224 bits (572), Expect = 8e-69
 Identities = 102/246 (41%), Positives = 162/246 (65%), Gaps = 3/246 (1%)

Query: 475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPID- 533
           A L F  +H++RK++LD  E T+++ + ++  A+D    +  I+WSD+S++ I    +D 
Sbjct: 2   AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61

Query: 534 --EGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDE 591
               S    VI  D    DGLAVDWI+S+IYWTD+   T+ +A+ +G  RK L R    +
Sbjct: 62  AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121

Query: 592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV 651
           PR++ ++P+ G+MYW+DWG  AKI++ G++G     ++  +I+WPNG+TLDL+  RLYWV
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181

Query: 652 DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN 711
           D+KL+ ISS D NGGNR+ +L   + L+HPFS++ FED ++W+D   +AI+ AN+ TG +
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 241

Query: 712 LTAITG 717
           +  +  
Sbjct: 242 VNLLAE 247

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 1e-07
 Identities = 26/152 (17%), Positives = 50/152 (32%), Gaps = 2/152 (1%)

Query: 447 KGGFKCECVAGYIKDPHHPTQCKAAEGHASLLFARKHDIRKISLD-HHEMTAIVNSTKSA 505
           KG  +          P                +     I+K  L+     + +  + +  
Sbjct: 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166

Query: 506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTD 565
             I     +G ++W D     I    ++ G  R  ++E++K +A   ++      ++WTD
Sbjct: 167 NGITLDLLSGRLYWVDSKLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225

Query: 566 AHKNTIELANFEGTMRKVLVRSYLDEPRSLAL 597
                I  AN        L+   L  P  + L
Sbjct: 226 IINEAIFSANRLTGSDVNLLAENLLSPEDMVL 257

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  214 bits (546), Expect = 5e-65
 Identities = 76/253 (30%), Positives = 131/253 (51%), Gaps = 11/253 (4%)

Query: 477 LLFARKHDIRKISLDHHEMTAIVNST------KSATAIDFVFRTGMIFWSDISEKKIYKA 530
           LLFA+   I ++ L+ + M             K    + F     +++W+DISE  I +A
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 531 PIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLD 590
            +    E T +I +D    +G+A+D +   I+WTD+  + IE+A  +GT R+VL  + L 
Sbjct: 64  SLHG-GEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122

Query: 591 EPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY 649
            PR +  +P+ G +YW+DW + N KIE + MDG++R ++   ++  PNGLT D    +L 
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182

Query: 650 WVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTG 709
           WVDA  +     +     RR VL   + L +PF+++++   LY++DW+  ++   +    
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKVL---EGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239

Query: 710 DNLTAITGVHQTH 722
             +       QT 
Sbjct: 240 KEMDTFHPHKQTR 252

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMCN 172
             CQ  EF C N+RCI   W+CDG+ DC D SDE P +C+
Sbjct: 4   PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 20/36 (55%), Positives = 22/36 (61%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
            C+  EF CAN  CIQ  W CDGD+DC D SDE   
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 17/41 (41%), Positives = 17/41 (41%)

Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
           GS P      F C    CI   W CDG NDC D  DE    
Sbjct: 1   GSPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 16/39 (41%), Positives = 16/39 (41%)

Query: 51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          S P      F C    CI   W CDG NDC D  DE   
Sbjct: 2  SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 3e-07
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 90  QKRICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
               C   EF C +    C+   W CD + DC D SDE   
Sbjct: 2   SPPQCQPGEFACAN--SRCIQERWKCDGDNDCLDNSDEAPA 40

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           TC  + F+C ++ CIP  W CD + DC D SDE P+ C
Sbjct: 2   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           TC    F C +  CI ++W CD D DC+DGSDE   
Sbjct: 2   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
               F+C    CIP  W CD   DC DG DE    
Sbjct: 4   GPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
              F+C    CIP  W CD   DC DG DE   
Sbjct: 4  GPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 7e-07
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           CG   F C S    C+P  W CD++PDC DGSDE   
Sbjct: 3   CGPASFQCNS--STCIPQLWACDNDPDCEDGSDEWPQ 37

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           + +C +++F+C + RCIP HW CDG+ DC D SDE    C
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (135), Expect = 4e-11
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSCQ 300
           +C S +F C +G CI   W CDGD+DC D SDE    
Sbjct: 4   SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 222 GSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCHETCRS 267
           GS  C ++  F+C  G CIP  W CDG NDC D  DE      C +
Sbjct: 1   GSHSCSSTQ-FKCNSGRCIPEHWTCDGDNDCGDYSDETHA--NCTN 43

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 18/34 (52%), Positives = 19/34 (55%)

Query: 57 STMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ 90
          ST F+C  G CIP  W CDG NDC D  DE    
Sbjct: 7  STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 92  RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK 131
             C   +F C S  G C+P  W CD + DC D SDE    
Sbjct: 3   HSCSSTQFKCNS--GRCIPEHWTCDGDNDCGDYSDETHAN 40

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (140), Expect = 9e-12
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 129 SCKNRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
           S     C+ +EF+C + +CI   W CDG  +C D SDE  E C
Sbjct: 2   SAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 6e-11
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
             + C  +EF C +G CI   W+CDG  +C+DGSDE   
Sbjct: 4   VGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 15/35 (42%), Positives = 18/35 (51%)

Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
               F+C  G CI   WVCDG  +C DG DE +  
Sbjct: 9   ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 6e-08
 Identities = 15/34 (44%), Positives = 18/34 (52%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
              F+C  G CI   WVCDG  +C DG DE + 
Sbjct: 9  ERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C + EF C+   G+C+   W+CD + +C DGSDE   
Sbjct: 8   CERNEFQCQD--GKCISYKWVCDGSAECQDGSDESQE 42

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           TCR DEF C++GNCI     CD + DCKD SDE  C
Sbjct: 2   TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 17/33 (51%), Positives = 21/33 (63%)

Query: 134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDE 166
           TC+  EF+C +  CI    QCD E+DC D SDE
Sbjct: 2   TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
           C  +EF C    G C+  +  CD   DC D SDE  C N
Sbjct: 3   CRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGCVN 39

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
              F+C+ G CI  +  CD + DC D  DE  C
Sbjct: 4  RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
               F+C+ G CI  +  CD + DC D  DE  C
Sbjct: 4   RPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (139), Expect = 1e-11
 Identities = 21/36 (58%), Positives = 24/36 (66%)

Query: 264 TCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           TC   EF C +G CI R ++CD D DC DGSDE SC
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 6e-11
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
           +TC  +EFRC + +CI   + CD + DC D SDE 
Sbjct: 1   KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA 35

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 56 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          +   FRC  G CI   +VCD   DC DG DE  C
Sbjct: 4  SQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 16/34 (47%), Positives = 18/34 (52%)

Query: 228 NSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           +   FRC  G CI   +VCD   DC DG DE  C
Sbjct: 4   SQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 92  RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           + C Q EF C    G+C+   ++CD + DC DGSDE SC
Sbjct: 1   KTCSQAEFRCHD--GKCISRQFVCDSDRDCLDGSDEASC 37

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (137), Expect = 3e-11
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 4/52 (7%)

Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQIC 443
           C+ DNGGC   C +      C C  GY L  +  +C+  +       C +  
Sbjct: 1   CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF----PCGKFT 48

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C+  NG C   C           ++ C+C  G  L  D   C      PC
Sbjct: 1   CSLDNGGCDQFCREERS------EVRCSCAHGYVLGDDSKSCVSTERFPC 44

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 7e-11
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDECETPGSCSQICL 444
           C+ DNG C   C +     +C C  GY L+ N   CI          C +  L
Sbjct: 3   CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY----PCGKQTL 51

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 6/50 (12%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C+  NG C   C            + C+C  G  L  +   C   G  PC
Sbjct: 3   CSLDNGDCDQFCHEEQN------SVVCSCARGYTLADNGKACIPTGPYPC 46

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 134 TCQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDEDPEMCN 172
            C   E  C  +   CI +   CDGE DC D SDEDPE C+
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C + E  CR    EC+     CD   DC DGSDE   
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 264 TCRSDEFTCAN--GNCIQRIWLCDGDDDCKDGSDEKSC 299
            C   E  C      CI  +  CDG+ DC+DGSDE   
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 229 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCH 262
                C G    CI     CDG+ DC DG DE    
Sbjct: 5   EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 2/35 (5%)

Query: 57 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 89
               C G    CI     CDG+ DC DG DE   
Sbjct: 5  EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (131), Expect = 1e-10
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
           C + EF C +G CI   W CDG  DCKD SDE++C
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 135 CQASEFRCGNNRCIPNHWQCDGEFDCSDKSDED 167
           C A EF C +  CI + W+CDG  DC DKSDE+
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE 34

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          PC  +  F C  G CI S+W CDG  DC D  DE+ C
Sbjct: 1  PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 225 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           PC  +  F C  G CI S+W CDG  DC D  DE+ C
Sbjct: 1   PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C   EF C S  GEC+  +W CD  PDC D SDE++C
Sbjct: 2   CSAFEFHCLS--GECIHSSWRCDGGPDCKDKSDEENC 36

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 135 CQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDEDPEMCN 172
           C+   F+CG N   CI +   CDG  DC +  DEDP++C+
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 41

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C +  F C  +  EC+    +CD + DC +  DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 265 CRSDEFTCAN--GNCIQRIWLCDGDDDCKDGSDEKSC 299
           C    F C      CI  + +CDG  DC +  DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 229 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKCH 262
              F+C G    CI    VCDG  DC +  DE    
Sbjct: 4   KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 57 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 89
             F+C G    CI    VCDG  DC +  DE   
Sbjct: 4  KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 172 NGVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMC 218
           N        NG C +LCLPAPQIN HSPK +CACP+G+ L  D+  C
Sbjct: 2   NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 1e-07
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 6/45 (13%)

Query: 390 DECAKDNGGCLHKCVDLPV------GYMCECNEGYKLSSNRHTCI 428
           +     NGGC + C+  P        + C C +G  L+ +  +C+
Sbjct: 5   ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 49

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 4e-10
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 134 TCQA-SEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC 171
            C+  ++F+C +  CI     C+   DC D SDE  + C
Sbjct: 5   LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 261 CHETCRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC 299
                  ++F C +G CI    +C+   DC+D SDE   
Sbjct: 3   VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 226 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCH 262
           C     F+C  G CI    VC+   DC D  DE    
Sbjct: 6   CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 42

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 13/36 (36%), Positives = 15/36 (41%)

Query: 54 CRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          C     F+C  G CI    VC+   DC D  DE   
Sbjct: 6  CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
            G  +F C S  GEC+ L  +C+   DC D SDE   
Sbjct: 7   EGPNKFKCHS--GECITLDKVCNMARDCRDWSDEPIK 41

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 5e-10
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC 433
           C+ DNGGC H C++      C C  GYKL  +   C    + 
Sbjct: 2   CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 4e-05
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C+  NG C+H CL             C+C  G KL  DLL C  A   PC
Sbjct: 2   CSLDNGGCTHYCLEEVG------WRRCSCAPGYKLGDDLLQCHPAVKFPC 45

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 264 TCRSDEFTC-ANGNCIQRIWLCDGDDDCKDGSDEKSCQPV 302
            C +DEF C  +G CI   W CDGD DC D SDEKSC+ V
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCEGV 42

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 7e-09
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 133 RTCQASEFRCGNN-RCIPNHWQCDGEFDCSDKSDEDPEMCNGV 174
             C   EF+C  +  CIP  W+CDG+ DC D SDE  + C GV
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCEGV 42

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
           C  +EF CR   G C+PL W CD + DC D SDEKSC+ 
Sbjct: 4   CHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCEG 41

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 56 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 89
          ++  F+C   G+CIP  W CDG  DC D  DEK C
Sbjct: 5  HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 228 NSTMFRC-TGGMCIPSTWVCDGQNDCPDGVDEKKC 261
           ++  F+C   G+CIP  W CDG  DC D  DEK C
Sbjct: 5   HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 301 PVKCTAGQFTCQNLTACIPDKWVCDGD 327
           P  C   +F C+    CIP +W CDGD
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGD 27

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
           G +EC  +NGGC H C DL +GY C C +G++L +    C
Sbjct: 1   GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRC 39

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 431 DECET-PGSCSQICLNEKGGFKCECVAGY 458
           +EC    G CS +C + K G++C C  G+
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGF 31

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 6/39 (15%)

Query: 173 GVNHCAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKL 211
           G N C   NG CSH+C              C CP+G +L
Sbjct: 1   GTNECLDNNGGCSHVCNDLKI------GYECLCPDGFQL 33

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 264 TCRSDEFTCANGN--CIQRIWLCDGDDDCKDGSDEKSC 299
           TC+S +F+C      CI + W CDG  DC +GSDE+ C
Sbjct: 4   TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C   +F+C      C+P  W CD   DC +GSDE+ C
Sbjct: 5   CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 6e-09
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 132 NRTCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDE 166
           + TC++ +F C    NRCIP  W+CDG+ DC + SDE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 56 NSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 89
           S  F C G    CIP  W CDGQ DC +G DE+ C
Sbjct: 6  KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 228 NSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 261
            S  F C G    CIP  W CDGQ DC +G DE+ C
Sbjct: 6   KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 1e-09
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
           +DEC  D   C   CV+L  GY C+C EG++L  +   C  +
Sbjct: 1   IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (112), Expect = 6e-08
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
           IDEC+ P +CSQ+C+N +GG+KC+C  G+  DPH    CKA
Sbjct: 1   IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKA 40

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
           V+EC          CV+ P  Y+C+C   ++L+  R  C+D
Sbjct: 3   VNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 429 DIDECETP-GSCSQICLNEKGGFKCECVAGYIKDP 462
           D++EC  P    S  C+N  G + C+C   +  +P
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 392 CAKDNGGCLHKCVDLP-VGYMCECNEGYKLSSNRHTCIDIDEC 433
           C   NG C   C +      +C C EGY+L+ N+ +C      
Sbjct: 3   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C   NG C   C  +        K+ C+C EG +L  +   C  A   PC
Sbjct: 3   CNIKNGRCEQFCKNSADN-----KVVCSCTEGYRLAENQKSCEPAVPFPC 47

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 264 TCRSDEFTCA--NGNCIQRIWLCDGDDDCKDGSDEKSC 299
           +C   E  C   +  CI ++++CDG +DC++G DEK C
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC 130
           C + E  C     +C+   ++CD + DC +G DEK C
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 134 TCQASEFRC--GNNRCIPNHWQCDGEFDCSDKSDE 166
           +C   E +C   + +CI   + CDG  DC +  DE
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 57 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 89
              +C G    CI   +VCDG NDC +G DEK C
Sbjct: 5  EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 229 STMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKKC 261
               +C G    CI   +VCDG NDC +G DEK C
Sbjct: 5   EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 50.3 bits (120), Expect = 4e-09
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 5/41 (12%)

Query: 264 TCRSDEFTCAN-----GNCIQRIWLCDGDDDCKDGSDEKSC 299
           +C   +F C+      G C  + WLCDG  DC DG DE  C
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 134 TCQASEFRCGNN-----RCIPNHWQCDGEFDCSDKSDE 166
           +C   +FRC         C P  W CDG  DC D  DE
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 94  CGQEEFTCRSSP---GECVPLTWMCDDNPDCSDGSDEKSC 130
           C   +F C   P   GEC P  W+CD +PDC DG DE  C
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 56 NSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 89
              FRC+      G C P  W+CDG  DC DG DE  C
Sbjct: 3  PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 228 NSTMFRCT-----GGMCIPSTWVCDGQNDCPDGVDEKKC 261
               FRC+      G C P  W+CDG  DC DG DE  C
Sbjct: 3   PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 7e-09
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 389 VDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
           +DEC    G    C H C +   G+ C C  GY L  N+ TC +
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)

Query: 430 IDECETP----GSCSQICLNEKGGFKCECVAGY 458
           IDEC+       +C   C N  GGF C C AGY
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGY 33

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 265 CRSDEFTCANGN--CIQRIWLCDGDDDCKDGSDEKSC 299
           CR  E +C   +  CI   W CDG++DC  G DE++C
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 8e-09
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 94  CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCKN 132
           C   E +C +   +C+P++W CD   DC  G DE++C N
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCGN 39

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 7e-08
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 135 CQASEFRCGNN--RCIPNHWQCDGEFDCSDKSDED 167
           C+  E  CG +  +CIP  W+CDGE DC    DE+
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 57 STMFRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 89
               C      CIP +W CDG+NDC  G DE+ C
Sbjct: 3  IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 229 STMFRCTGG--MCIPSTWVCDGQNDCPDGVDEKKC 261
                C      CIP +W CDG+NDC  G DE+ C
Sbjct: 3   IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 429 DIDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQC 468
           DIDECE  G CS +C N  G F+C C           T C
Sbjct: 1   DIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGTDC 40

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHT 426
           +DEC  + G C   C +LP  + C C     L+    T
Sbjct: 2   IDECE-NGGFCSGVCHNLPGTFECICGPDSALAGQIGT 38

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 392 CAKDNGGCLHKCVDLPVG-YMCECNEGYKLSSNRHTCIDIDEC 433
           C  +NGGC   C D       C C+EGY L ++  +C    E 
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 177 CAAVNGHCSHLCLPAPQINAHSPKISCACPEGLKLLPDLLMCAEAGSKPC 226
           C   NG C   C      +    K SC C EG  LL D + C      PC
Sbjct: 2   CVNENGGCEQYCS-----DHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC 46

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI 428
           +DEC +D   C    C +    Y CEC  G++LS N   CI
Sbjct: 2   IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI 42

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDP 462
           DIDEC+  P  C   +C N +G ++CEC  G+   P
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 389 VDECAKDNGG---CLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI 430
           VDEC    G    C H C +   GY C C  GY L  N+HTC  +
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 430 IDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
           +DEC T       C   C N  GG+ C C  GYI   +  T C A
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHT-CSA 44

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 9e-08
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 389 VDECAKDNGGC-LHKCVDLPVGYMCECNEGYKLSSNRHTC 427
           +DEC +  G C   KC++    + C C  GY L+ +   C
Sbjct: 3   IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 429 DIDECETP--GSCSQICLNEKGGFKCECVAGYIKDP 462
           DIDEC+          C+N  G F+C C  GY  + 
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 37

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 390 DECA-KDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC 427
           +EC    +  C H C +   GY C C   Y L  +   C
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 14/42 (33%), Gaps = 3/42 (7%)

Query: 431 DECETP--GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
           +EC       CS  C N  GG+ C C   Y         C  
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKN-CGV 41

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 426 TCIDIDECET-PGSCSQICLNEKGGFKCECVAGYIKDPHH 464
           + +D+DEC+         C+N  G ++CEC  GYI   + 
Sbjct: 1   SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE 40

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID 429
           +DEC + +     +C++    Y CEC  GY L    + C+D
Sbjct: 5   MDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 7e-07
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 8/47 (17%)

Query: 389 VDECAKDNGGCL--------HKCVDLPVGYMCECNEGYKLSSNRHTC 427
           +DECA  +            H C +   GY C C  GY+L  +RH+C
Sbjct: 4   LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 10/52 (19%)

Query: 428 IDIDECET---------PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA 470
           +D+DEC +            C  +C N  GG+ C C  GY       + C+A
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS-CQA 52

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 389 VDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCI 428
           +DEC      C   +CV+ P  + C+C+EGY+        C+
Sbjct: 3   IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC 468
           DIDEC   P  C +  C+N  G F+C+C  GY         C
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	734
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.94
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.8
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.72
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.65
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.64
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.58
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.56
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.43
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.34
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.23
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.21
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.2
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.19
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.14
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.09
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.07
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.07
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.06
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.05
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.03
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.02
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.02
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.01
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.01
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.99
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.99
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	98.97
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.97
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.97
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.97
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.97
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.96
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.96
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.95
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.93
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.92
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1nt0a3	45	Mannose-binding protein associated serine protease	98.89
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	98.88
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.88
d1szba2	45	Mannose-binding protein associated serine protease	98.88
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.84
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.84
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.83
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.83
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.83
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.82
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.81
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.8
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.8
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.78
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	98.77
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.69
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.68
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	98.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.62
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.6
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.59
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.57
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.55
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.49
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.47
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	98.47
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.45
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.43
d1nt0a3	45	Mannose-binding protein associated serine protease	98.43
d1szba2	45	Mannose-binding protein associated serine protease	98.41
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.38
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.36
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.35
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.33
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.25
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.23
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.23
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.23
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.22
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.18
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.16
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	98.15
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.11
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.07
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.05
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.02
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.01
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.87
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.79
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.77
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.72
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.71
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	97.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.65
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.62
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.6
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.59
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	97.59
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.58
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.46
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.44
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.37
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.3
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	97.28
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.22
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.22
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	97.17
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	97.16
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.15
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.12
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.08
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.07
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	97.05
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	96.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.92
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	96.85
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	96.83
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	96.72
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	96.65
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.57
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.53
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	96.49
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.49
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	96.47
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.43
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	96.41
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.07
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	95.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	95.8
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.77
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.75
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	95.72
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	95.71
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	95.63
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	95.57
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.47
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	95.43
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.3
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.11
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	95.06
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.05
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	94.99
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	94.98
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	94.92
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	94.64
d1tbga_	340	beta1-subunit of the signal-transducing G protein	94.11
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	93.94
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	93.8
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	93.6
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	93.23
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	93.2
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	93.19
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	92.69
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	92.04
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	91.7
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.65
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	91.4
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	91.21
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	91.02
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	90.61
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	90.54
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	89.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.48
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.46
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	88.71
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	87.5
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	87.25
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	86.42
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	86.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	86.24
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.69
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	85.51
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	83.93
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.17
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.58
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	81.11
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	80.68
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	80.59

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-42  Score=355.71  Aligned_cols=251  Identities=41%  Similarity=0.821  Sum_probs=228.4

Q ss_pred             ceeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCC---ceEEEEeCCCCCccc
Q psy8875         475 ASLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGS---ERTVVIEEDKTIADG  551 (734)
Q Consensus       475 ~~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~---~~~~~~~~~~~~p~g  551 (734)
                      ++|||++++.|+++++++.++..+++++..+++||||+.+++|||+|...+.|+++.+++..   ..+.++..++..|.+
T Consensus         2 ~fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             CEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CEEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            68999999999999999999999999999999999999999999999999999999998422   245566667889999


Q ss_pred             eeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc
Q psy8875         552 LAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS  631 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~  631 (734)
                      |||||.+++|||+|...++|++++++|..+++++...+..|.+|+|||.+|+|||++++..++|+|++|||+.+++++..
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccc
Confidence            99999999999999999999999999999999888889999999999999999999998888999999999999999988


Q ss_pred             CCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCc
Q psy8875         632 DIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDN  711 (734)
Q Consensus       632 ~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~  711 (734)
                      .+.+|+||+||+.+++|||+|...++|++++++|+++++++.....+.+|++|++++++|||+|+.+++|+++++.+|+.
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~  241 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD  241 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCC
T ss_pred             ccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcc
Confidence            89999999999999999999999999999999999999988776678899999999999999999999999999999999


Q ss_pred             eEEEecccccCCCccC
Q psy8875         712 LTAITGVHQTHEPLNS  727 (734)
Q Consensus       712 ~~~l~~~~~l~~P~~i  727 (734)
                      .+++...  +..|++|
T Consensus       242 ~~~~~~~--~~~p~~i  255 (266)
T d1ijqa1         242 VNLLAEN--LLSPEDM  255 (266)
T ss_dssp             CEEEECS--CSCCCCE
T ss_pred             eEEEEcC--CCCceEE
Confidence            8888653  4445443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-40  Score=340.47  Aligned_cols=249  Identities=30%  Similarity=0.599  Sum_probs=221.6

Q ss_pred             eeeeeeccceEEeecCCCceE------EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCc
Q psy8875         476 SLLFARKHDIRKISLDHHEMT------AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIA  549 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~------~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p  549 (734)
                      +|||+.++.|+++.+++....      .+......++|||||+.+++|||+|...++|+++.++ |+..++++..++..|
T Consensus         3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~-g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLH-GGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESS-SCCCEEEECTTCCCE
T ss_pred             EEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcc-cCCcEEEEEeccccc
Confidence            799999999999999876533      2333456788999999999999999999999999999 555666666678899


Q ss_pred             cceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEEEeccCCCceEEE
Q psy8875         550 DGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIERAGMDGSHRNMV  628 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~~~~ldG~~~~~l  628 (734)
                      .+|||||.+++|||++...++|.+++++|..+++++...+..|++|||||.+|+|||++++. .++|+|++|||+.++++
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            99999999999999999999999999999999999888899999999999999999999874 46899999999999999


Q ss_pred             EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccC
Q psy8875         629 IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       629 v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~  708 (734)
                      +...+..|+|||||+.+++|||+|...++|++++++|..+++++..   +.+|++|++++++||||||++++|+++++.+
T Consensus       162 ~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~---~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~  238 (263)
T d1npea_         162 AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (263)
T ss_dssp             ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC---CCSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC---CCCcEEEEEECCEEEEEECCCCEEEEEECCC
Confidence            9889999999999999999999999999999999999999988853   6789999999999999999999999999999


Q ss_pred             CCceEEEecccccCCCccCCC
Q psy8875         709 GDNLTAITGVHQTHEPLNSPG  729 (734)
Q Consensus       709 G~~~~~l~~~~~l~~P~~i~~  729 (734)
                      |+.++++... .-..|++|+.
T Consensus       239 g~~~~~~~~~-~~~~~~gi~v  258 (263)
T d1npea_         239 SKEMDTFHPH-KQTRLYGITI  258 (263)
T ss_dssp             TEEEEEECCS-SCCCCCCEEE
T ss_pred             CccceEECCC-CCCCcceEEE
Confidence            9988777532 3456777653

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-26  Score=236.08  Aligned_cols=209  Identities=23%  Similarity=0.395  Sum_probs=178.5

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccc
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADG  551 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~g  551 (734)
                      ..|||++  .+.|+++.+++...+.++. ++..|.+||+|+.+++|||++...++|.+++++ |...++++...+..|.+
T Consensus        48 ~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~d-g~~~~~l~~~~l~~p~~  126 (263)
T d1npea_          48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLFDTGLVNPRG  126 (263)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSSEEE
T ss_pred             CEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecC-CceEEEEecccccCCcE
Confidence            4577765  4679999999988887765 568999999999999999999999999999999 55666677777899999


Q ss_pred             eeeeccCCcEEEEeCCC--CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEE
Q psy8875         552 LAVDWIYSHIYWTDAHK--NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVI  629 (734)
Q Consensus       552 lAvD~~~~~lY~td~~~--~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv  629 (734)
                      ||||+.++.|||++.+.  .+|++++++|..+++++...+..|.|||||+.+++|||+|.+ ..+|++++++|..+++++
T Consensus       127 l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~-~~~I~~~~~~g~~~~~v~  205 (263)
T d1npea_         127 IVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKVL  205 (263)
T ss_dssp             EEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTEEEEEEEE
T ss_pred             EEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC-CCEEEEEECCCCCeEEEE
Confidence            99999999999999874  469999999999999998899999999999999999999965 479999999999988776


Q ss_pred             EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         630 VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       630 ~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                      . .+..|.|||++  +++|||+|+..++|.++++.+.....++.. .....|.||++...
T Consensus       206 ~-~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~-~~~~~~~gi~v~~~  261 (263)
T d1npea_         206 E-GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALS  261 (263)
T ss_dssp             E-CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC-SSCCCCCCEEEECS
T ss_pred             C-CCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECC-CCCCCcceEEEeCC
Confidence            4 57889999996  899999999999999999875554443321 34568999998654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.8e-26  Score=231.13  Aligned_cols=208  Identities=21%  Similarity=0.360  Sum_probs=172.3

Q ss_pred             eEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc----eEEEEcCCCCC
Q psy8875         516 MIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM----RKVLVRSYLDE  591 (734)
Q Consensus       516 ~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~----~~~l~~~~l~~  591 (734)
                      .|+++.  ...|++++++ +.....++. ++..|.+|++|+.+++|||+|...+.|.+++++|..    .++++...+..
T Consensus         3 fLl~s~--~~~I~~~~l~-~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~   78 (266)
T d1ijqa1           3 YLFFTN--RHEVRKMTLD-RSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA   78 (266)
T ss_dssp             EEEEEC--BSSEEEEETT-SCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred             EEEEEC--CCeEEEEECC-CCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence            456665  4569999998 455555554 788899999999999999999999999999998743    45566678899


Q ss_pred             ceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEE
Q psy8875         592 PRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRL  670 (734)
Q Consensus       592 P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~  670 (734)
                      |.+||||+.++.|||+|.+ ..+|++++++|..+++++...+..|.+|+||+..++|||++++. .+|++++++|+++++
T Consensus        79 p~glAvD~~~~~lY~~d~~-~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~  157 (266)
T d1ijqa1          79 PDGLAVDWIHSNIYWTDSV-LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (266)
T ss_dssp             CCEEEEETTTTEEEEEETT-TTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             cceEEEeeccceEEEEecC-CCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec
Confidence            9999999999999999965 47999999999999988888899999999999999999999764 589999999999999


Q ss_pred             EEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCCce-EEEecccccCCCccCCCCC
Q psy8875         671 VLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGDNL-TAITGVHQTHEPLNSPGTN  731 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~~~-~~l~~~~~l~~P~~i~~~~  731 (734)
                      ++.  ..+..|.||+++  +++|||+|...+.|.+++. +|..+ .++.....+.+|++++..+
T Consensus       158 l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~-dG~~~~~~~~~~~~~~~p~~lav~~  218 (266)
T d1ijqa1         158 LVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFE  218 (266)
T ss_dssp             EEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEET
T ss_pred             ccc--cccceeeEEEeeccccEEEEecCCcCEEEEEEC-CCCCEEEEEeCCCcccccEEEEEEC
Confidence            886  347889999995  7899999999999999987 55554 4455555688998887444

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=2.2e-20  Score=189.78  Aligned_cols=225  Identities=16%  Similarity=0.275  Sum_probs=174.0

Q ss_pred             ceeeeeec---cceEEeecCCCceEEEe-cCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcc
Q psy8875         475 ASLLFARK---HDIRKISLDHHEMTAIV-NSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~~---~~I~~i~l~~~~~~~l~-~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~  550 (734)
                      ..+++++.   ..|.++...+.....+. .....|.+|++++ .+.|||++...+.|+.. .+ +....++....+..|.
T Consensus        25 G~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~-~~-~~~~~~~~~~~~~~p~  101 (260)
T d1rwia_          25 GNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLA-AG-SNNQTVLPFDGLNYPE  101 (260)
T ss_dssp             CCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEEC-TT-CSCCEECCCCSCCSEE
T ss_pred             CCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeee-ee-ccceeeeeeeeeeecc
Confidence            34555432   34666655554443332 3466889999986 67899999877666543 33 4444554445678899


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV  630 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~  630 (734)
                      +||+|+ .++|||++....++.+.+.++..........+..|.+|++|+ .|.||++++. ..+|.+.+++|..+.++..
T Consensus       102 ~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~-~~~i~~~d~~~~~~~~~~~  178 (260)
T d1rwia_         102 GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLPF  178 (260)
T ss_dssp             EEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECCC
T ss_pred             cccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccc-cccccccccccceeeeeec
Confidence            999995 678999999999999999999887777667789999999998 5789999975 4799999999988877666


Q ss_pred             cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccC
Q psy8875         631 SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       631 ~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~  708 (734)
                      ..+..|.||++|+ +++|||+|...++|.+++.++....++..  ..+..|.+|++. .+.|||+|+++++|++++...
T Consensus       179 ~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~--~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         179 TDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPF--TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             SSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCC--CSCCCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             cccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEcc--CCCCCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            7889999999994 67899999999999999998887666543  347889999996 579999999999999997653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=4.4e-19  Score=180.02  Aligned_cols=215  Identities=18%  Similarity=0.268  Sum_probs=165.6

Q ss_pred             cceEEEeeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         503 KSATAIDFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..|.+|++|+ .+.||+++... ++|.++... +.....+....+..|.+||+|+ .++|||++...+.|. ...++...
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~-~~~~~~~~   89 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATG-STGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVT-LAAGSNNQ   89 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC-----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEE-ECTTCSCC
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCC-CceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceee-eeeeccce
Confidence            4799999995 68899998655 678887766 4444444445678899999995 578999999866664 44455555


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      .++....+..|.+||+|+ .|.|||++.. ..++.+...++.....+....+..|.+|++|+ +++|||++...++|.++
T Consensus        90 ~~~~~~~~~~p~~iavd~-~g~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~  166 (260)
T d1rwia_          90 TVLPFDGLNYPEGLAVDT-QGAVYVADRG-NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKL  166 (260)
T ss_dssp             EECCCCSCCSEEEEEECT-TCCEEEEEGG-GTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEE
T ss_pred             eeeeeeeeeecccccccc-cceeEeeccc-cccccccccccceeeeeeecccCCcceeeecC-CCCEeeecccccccccc
Confidence            555556678999999998 6789999965 47899999999887766667789999999995 67899999999999999


Q ss_pred             ecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         662 DYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       662 ~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      +.++..+.++..  ..+..|.+|+++ +++|||+|+.+++|+++.+. +...+++.. ..+..|.+|+
T Consensus       167 d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~-~~~~~~~~~-~~~~~P~~i~  230 (260)
T d1rwia_         167 EAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAG-STTSTVLPF-TGLNTPLAVA  230 (260)
T ss_dssp             CTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTT-CSCCEECCC-CSCCCEEEEE
T ss_pred             ccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCC-CCeEEEEcc-CCCCCeEEEE
Confidence            999988776543  457889999994 67999999999999999763 444455433 3477888775

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.78  E-value=3.1e-17  Score=171.50  Aligned_cols=211  Identities=16%  Similarity=0.184  Sum_probs=161.5

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC----CCeEEEEeC
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH----KNTIELANF  576 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~----~~~I~~~~l  576 (734)
                      ......|++||. .+.|||+|...++|+|++++++....++. .....|.|||++. .++||+++..    ...|...+.
T Consensus        38 ~~~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~  114 (319)
T d2dg1a1          38 KGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATE  114 (319)
T ss_dssp             SCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECT
T ss_pred             CCcCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcC
Confidence            334557999996 56799999999999999998544344443 4566899999995 5789999864    456888888


Q ss_pred             CCCceEEEEc--CCCCCceeEEEeCCCCeEEEEecCC-----CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEE
Q psy8875         577 EGTMRKVLVR--SYLDEPRSLALNPIDGWMYWSDWGQ-----NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       577 dG~~~~~l~~--~~l~~P~~iavD~~~g~LYwtd~~~-----~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LY  649 (734)
                      .+.....++.  .....|+++++|+ .|.||++|...     ...|++++.+|+..+.+. ..+..|+||++++.+++||
T Consensus       115 ~~~~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~ly  192 (319)
T d2dg1a1         115 NGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLW  192 (319)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEE
T ss_pred             CCceeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEE
Confidence            8777666553  3467899999997 57899998642     357999999997766554 4678899999999899999


Q ss_pred             EEeCCCCeEEEEecCCC--ceE----EEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         650 WVDAKLNEISSCDYNGG--NRR----LVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG~--~~~----~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ++|+..++|++++++..  ...    .+.........|.||++ .+|+||+++++.++|.++++ +|+.+..|..
T Consensus       193 vad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         193 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence            99999999999987643  221    11111233456999999 57899999999999999997 6887777653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.72  E-value=1.2e-16  Score=166.46  Aligned_cols=218  Identities=14%  Similarity=0.178  Sum_probs=163.2

Q ss_pred             ceEEEecCCcceEEEeeeccCCeEEEEEeC-------CCcEEEEecCCCCceEEEEeC----CCCCccceeeeccCCcEE
Q psy8875         494 EMTAIVNSTKSATAIDFVFRTGMIFWSDIS-------EKKIYKAPIDEGSERTVVIEE----DKTIADGLAVDWIYSHIY  562 (734)
Q Consensus       494 ~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~-------~~~I~~~~l~~g~~~~~~~~~----~~~~p~glAvD~~~~~lY  562 (734)
                      .++.+..++..+.+++||+ .+.||+++..       .++|+|+++.++. .+++...    ....|.||++|..++.||
T Consensus         9 ~~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~-~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~   86 (314)
T d1pjxa_           9 LFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGK-KTVICKPEVNGYGGIPAGCQCDRDANQLF   86 (314)
T ss_dssp             CCEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCC-EEEEECCEETTEECCEEEEEECSSSSEEE
T ss_pred             ceEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCc-EEEEECCccccCCCcceeEEEeCCCCEEE
Confidence            5677788899999999996 6789998754       3579999988543 3333221    123589999998777899


Q ss_pred             EEeCCCCeEEEEeCCCCceEEEEcC----CCCCceeEEEeCCCCeEEEEecCC--------------CceEEEeccCCCc
Q psy8875         563 WTDAHKNTIELANFEGTMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQ--------------NAKIERAGMDGSH  624 (734)
Q Consensus       563 ~td~~~~~I~~~~ldG~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~--------------~~~I~~~~ldG~~  624 (734)
                      +++.. +.|.+.+.+|....++...    .+..|++|++|+ .|.||+||...              .++|++++.+|+.
T Consensus        87 vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~  164 (314)
T d1pjxa_          87 VADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM  164 (314)
T ss_dssp             EEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred             EEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCce
Confidence            98874 6799999998876554322    245799999997 58999998431              2479999999875


Q ss_pred             eEEEEEcCCCCceeEEEecCCC----eEEEEeCCCCeEEEEecCCCc----eEEEEcC-CCCCCCCeEEEE-ECCEEEEE
Q psy8875         625 RNMVIVSDIKWPNGLTLDLVQR----RLYWVDAKLNEISSCDYNGGN----RRLVLYS-PQTLSHPFSIST-FEDWLYWS  694 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD~~~~----~LYw~D~~~~~I~~~~~dG~~----~~~i~~~-~~~~~~P~gl~v-~~~~lywt  694 (734)
                      .++  ...+..||||++++..+    +||++|+..++|+++++++..    ++++... ......|.||++ .+++||++
T Consensus       165 ~~~--~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa  242 (314)
T d1pjxa_         165 IQV--DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             EEE--EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE
T ss_pred             eEe--eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE
Confidence            543  35688899999987654    799999999999999876442    3333332 123446999999 57899999


Q ss_pred             eCCCCceEEEeccCCCceEEEec
Q psy8875         695 DWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       695 d~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      +++.++|+++++.+|..+..+..
T Consensus       243 ~~~~g~I~~~dp~~g~~~~~i~~  265 (314)
T d1pjxa_         243 NWGSSHIEVFGPDGGQPKMRIRC  265 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEEC
T ss_pred             EcCCCEEEEEeCCCCEEEEEEEC
Confidence            99999999999887877766653

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=3.1e-16  Score=160.38  Aligned_cols=221  Identities=13%  Similarity=0.172  Sum_probs=171.3

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----CCCCCccceeeeccCCcEEEEeC-CCCeEEEE
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----EDKTIADGLAVDWIYSHIYWTDA-HKNTIELA  574 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----~~~~~p~glAvD~~~~~lY~td~-~~~~I~~~  574 (734)
                      .+..|.+|++++ .+.||++|..+++|.+++++ |.....+..     .....|.+++++...+.++|+.. .+++|.+.
T Consensus        21 ~f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (279)
T d1q7fa_          21 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY   98 (279)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             eECCccEEEEcC-CCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccc
Confidence            367899999997 67899999999999999987 443333211     12346888998877777777654 46799999


Q ss_pred             eCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-cCCCCceeEEEecCCCeEEEEeC
Q psy8875         575 NFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-SDIKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       575 ~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~~l~~P~glavD~~~~~LYw~D~  653 (734)
                      +.+|.....+....+..|.++++|+ .|.||+++.. ..+|.+.+.+|+....+-. ..+..|.+|++| .+++||++|.
T Consensus        99 ~~~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~-~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d-~~g~i~v~d~  175 (279)
T d1q7fa_          99 NQYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVN-DKQEIFISDN  175 (279)
T ss_dssp             CTTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEECTTTCSSEEEEEEC-SSSEEEEEEG
T ss_pred             cccccceeecCCCcccccceecccc-CCcEEEEeec-cceeeEeccCCceeecccccccccccceeeec-cceeEEeeec
Confidence            9999988777667789999999996 6789999864 5789999999976554432 457889999999 5679999999


Q ss_pred             CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCC-ceEEEeccCCCceEEEecccccCCCccCC
Q psy8875         654 KLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQK-AIYKANKFTGDNLTAITGVHQTHEPLNSP  728 (734)
Q Consensus       654 ~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~-~v~~~~~~~G~~~~~l~~~~~l~~P~~i~  728 (734)
                      ..++|++++.+|.....+.. ...+.+|.||++ ..++||++|+.++ +|..++ .+|+.+..+........|.+++
T Consensus       176 ~~~~V~~~d~~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~va  250 (279)
T d1q7fa_         176 RAHCVKVFNYEGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVA  250 (279)
T ss_dssp             GGTEEEEEETTCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEE
T ss_pred             cccceeeeecCCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEE
Confidence            99999999999987776643 346789999999 5678999998655 465555 4788777776544455677664

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=3e-14  Score=145.30  Aligned_cols=223  Identities=11%  Similarity=0.091  Sum_probs=168.0

Q ss_pred             eeeeee--ccceEEeecCCCceEEEec------CCcceEEEeeeccCCeEEEEE-eCCCcEEEEecCCCCceEEEEeCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVN------STKSATAIDFVFRTGMIFWSD-ISEKKIYKAPIDEGSERTVVIEEDK  546 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~------~~~~~~~i~~d~~~~~lyw~d-~~~~~I~~~~l~~g~~~~~~~~~~~  546 (734)
                      .|++++  .+.|++++.+|.-...+..      ....|.+++++...+.++|+. ..++.|.+.+.+ |.....+....+
T Consensus        35 ~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~  113 (279)
T d1q7fa_          35 DIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-GQFVRKFGATIL  113 (279)
T ss_dssp             CEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-SCEEEEECTTTC
T ss_pred             CEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-ccceeecCCCcc
Confidence            466665  4678888888765544421      234688888877777777764 445678888776 444444434567


Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCce
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHR  625 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~  625 (734)
                      ..|.++|+| ..++||+++....+|.+.+.+|+....+- ...+..|.+|++|+ .+.||++++. ..+|++.+.+|...
T Consensus       114 ~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~-~~~V~~~d~~G~~~  190 (279)
T d1q7fa_         114 QHPRGVTVD-NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQYL  190 (279)
T ss_dssp             SCEEEEEEC-TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCEE
T ss_pred             cccceeccc-cCCcEEEEeeccceeeEeccCCceeecccccccccccceeeecc-ceeEEeeecc-ccceeeeecCCcee
Confidence            889999999 56789999999999999999998766653 35678999999996 5799999975 57999999999866


Q ss_pred             EEEEE-cCCCCceeEEEecCCCeEEEEeCCC-CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceE
Q psy8875         626 NMVIV-SDIKWPNGLTLDLVQRRLYWVDAKL-NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIY  702 (734)
Q Consensus       626 ~~lv~-~~l~~P~glavD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~  702 (734)
                      ..+.. ..+..|.||++|+ .++||++|... .+|..++.+|+..+++... .....|.+|++. +++||++++ +++|.
T Consensus       191 ~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~-~~~~~p~~vav~~dG~l~V~~~-n~~v~  267 (279)
T d1q7fa_         191 RQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESK-VKHAQCFDVALMDDGSVVLASK-DYRLY  267 (279)
T ss_dssp             EEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEES-SCCSCEEEEEEETTTEEEEEET-TTEEE
T ss_pred             eeecccccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCC-CCCCCEeEEEEeCCCcEEEEeC-CCeEE
Confidence            55532 3578899999995 56799999754 4799999999987777653 346689999995 679999996 56666


Q ss_pred             EEe
Q psy8875         703 KAN  705 (734)
Q Consensus       703 ~~~  705 (734)
                      ++.
T Consensus       268 ~fr  270 (279)
T d1q7fa_         268 IYR  270 (279)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.64  E-value=1.3e-14  Score=150.69  Aligned_cols=215  Identities=13%  Similarity=0.194  Sum_probs=156.6

Q ss_pred             cceEEeecCCCceEEEec-----CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCCcccee
Q psy8875         483 HDIRKISLDHHEMTAIVN-----STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTIADGLA  553 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~-----~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~p~glA  553 (734)
                      ..|+++++.+...+.+..     ....|.+|++++..+.||+++.. +.|++++++ +...+++...    .+..|..|+
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~-g~~~~~~~~~~~g~~~~~pndl~  123 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE
T ss_pred             CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-CeEEEEeCC-CcEEEEEeccccccccCCCcEEE
Confidence            458899888776655432     22358999999877788888854 568999988 3333332221    244688999


Q ss_pred             eeccCCcEEEEeCC---------------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCC----eEEEEecCCCce
Q psy8875         554 VDWIYSHIYWTDAH---------------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDG----WMYWSDWGQNAK  614 (734)
Q Consensus       554 vD~~~~~lY~td~~---------------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g----~LYwtd~~~~~~  614 (734)
                      +|+ .++||+||..               .++|++++.+|+...++  ..+..|+||++++...    +||+++.. ..+
T Consensus       124 ~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~--~~~~~pNGi~~~~d~d~~~~~lyv~d~~-~~~  199 (314)
T d1pjxa_         124 FDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD--TAFQFPNGIAVRHMNDGRPYQLIVAETP-TKK  199 (314)
T ss_dssp             ECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE--EEESSEEEEEEEECTTSCEEEEEEEETT-TTE
T ss_pred             ECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee--CCcceeeeeEECCCCCcceeEEEEEeec-ccc
Confidence            995 5899999853               34799999999765443  4578899999987643    79999965 589


Q ss_pred             EEEeccCCCc----eEEEEE---cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875         615 IERAGMDGSH----RNMVIV---SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF  687 (734)
Q Consensus       615 I~~~~ldG~~----~~~lv~---~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~  687 (734)
                      |++.++++..    ++++..   .....|.||++| ..++||++++..++|.+++.+|......+..  ....|.+|++.
T Consensus       200 i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~--p~~~~t~~afg  276 (314)
T d1pjxa_         200 LWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRC--PFEKPSNLHFK  276 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEEC--SSSCEEEEEEC
T ss_pred             eEEeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEEC--CCCCEEEEEEe
Confidence            9998775432    222332   123468999999 6788999999999999999997765444432  24678889993


Q ss_pred             --CCEEEEEeCCCCceEEEec
Q psy8875         688 --EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       688 --~~~lywtd~~~~~v~~~~~  706 (734)
                        .+.||+|++.+++|++++.
T Consensus       277 ~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         277 PQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             TTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEECCCCcEEEEEC
Confidence              3479999999999999974

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.61  E-value=3.1e-14  Score=146.56  Aligned_cols=201  Identities=14%  Similarity=0.220  Sum_probs=151.7

Q ss_pred             EEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE
Q psy8875         506 TAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV  585 (734)
Q Consensus       506 ~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~  585 (734)
                      .+..||++++.|||+|+..++|+|++++++......+   ...|.+|+++ ..+.|+++..  ..|.+.++.+...+.+.
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~---~~~~~~i~~~-~dg~l~va~~--~gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL---PFMGSALAKI-SDSKQLIASD--DGLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC---SSCEEEEEEE-ETTEEEEEET--TEEEEEETTTCCEEEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC---CCCcEEEEEe-cCCCEEEEEe--CccEEeecccceeeEEe
Confidence            6778999999999999999999999998554332222   2467889998 4577888764  57999999877666665


Q ss_pred             cC----CCCCceeEEEeCCCCeEEEEecC-----CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCC
Q psy8875         586 RS----YLDEPRSLALNPIDGWMYWSDWG-----QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLN  656 (734)
Q Consensus       586 ~~----~l~~P~~iavD~~~g~LYwtd~~-----~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~  656 (734)
                      ..    ....|+++++|+ .|.||+++..     ....+++.. +|+..  .+...+..|+|+++++.++.|||+|+..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~--~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT--KLFADISIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE--EEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCcEE--EEeeccCCcceeeecCCCceEEEeecccc
Confidence            32    234689999998 5788888742     124566654 44332  33356888999999999999999999999


Q ss_pred             eEEEEecCCC------ceEEEEcCCCCCCCCeEEEE-ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         657 EISSCDYNGG------NRRLVLYSPQTLSHPFSIST-FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       657 ~I~~~~~dG~------~~~~i~~~~~~~~~P~gl~v-~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      +|+++++++.      .+..++........|.||++ .+|+||++.|..++|+++++ +|+.+..+..
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            9999998753      24444444345567999999 56899999999999999997 6887777754

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.58  E-value=5e-14  Score=145.40  Aligned_cols=212  Identities=12%  Similarity=0.038  Sum_probs=157.4

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCC---CC
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFE---GT  579 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ld---G~  579 (734)
                      ..+.+||+++ .++||+++...++|++++.+ |.. +.+.. ....|.+||+++ .++||+++...+.|.++.+.   +.
T Consensus        28 ~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~-g~~-~~~~~-~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          28 TFLENLASAP-DGTIFVTNHEVGEIVSITPD-GNQ-QIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCE-EEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCcCCEEECC-CCCEEEEeCCCCEEEEEeCC-CCE-EEEEc-CCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc
Confidence            3577899987 57899999999999999987 443 33333 456899999996 56799999887777766654   44


Q ss_pred             ceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc----------CCCCceeEEEecCCCeEE
Q psy8875         580 MRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS----------DIKWPNGLTLDLVQRRLY  649 (734)
Q Consensus       580 ~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~----------~l~~P~glavD~~~~~LY  649 (734)
                      ...+........|++|++++ .|.+|+++.. ..+|++.++++....+....          .+..|+||+.|  .++||
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~  178 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLY  178 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEE
T ss_pred             eeeccccCCccccceeEEcc-CCCEEeeccc-cccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCcee
Confidence            44444445677899999997 5899999965 47999999887765554432          24567899886  78999


Q ss_pred             EEeCCCCeEEEEecCCCc----eEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEecccccCCC
Q psy8875         650 WVDAKLNEISSCDYNGGN----RRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEP  724 (734)
Q Consensus       650 w~D~~~~~I~~~~~dG~~----~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P  724 (734)
                      |++...++|+++++++..    ...+.    ....|.+|++. ++.||++++..++|+++++ +|+...++.....+..|
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~~pdgia~d~dG~l~va~~~~~~V~~i~p-~G~~~~~~~~~~~~~~p  253 (302)
T d2p4oa1         179 VSNTEKMLLLRIPVDSTDKPGEPEIFV----EQTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGS  253 (302)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEE----ESCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTE
T ss_pred             eecCCCCeEEecccccccccccccccc----CCCCCcceEECCCCCEEEEEcCCCcEEEECC-CCCEEEEEecCCCCCCc
Confidence            999999999999987653    22222    24679999994 6799999999999999976 56655555444446666


Q ss_pred             ccCC
Q psy8875         725 LNSP  728 (734)
Q Consensus       725 ~~i~  728 (734)
                      .+++
T Consensus       254 t~va  257 (302)
T d2p4oa1         254 TAVA  257 (302)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            5543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=5.4e-13  Score=138.70  Aligned_cols=225  Identities=13%  Similarity=0.172  Sum_probs=158.2

Q ss_pred             eeeeee--ccceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeC----CCcEEEEecCCCCceEEEEe-CCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDIS----EKKIYKAPIDEGSERTVVIE-EDKT  547 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~-~~~~  547 (734)
                      .|||++  .+.|++++.++..... ++.....|.+|++++ .+.||+++..    ...|++++..++.....+.. ....
T Consensus        52 ~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  130 (319)
T d2dg1a1          52 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY  130 (319)
T ss_dssp             CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred             CEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCccc
Confidence            466665  5789999998876544 445667899999986 6789998754    34577777764443333321 2355


Q ss_pred             CccceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         548 IADGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .|.++++|. .++||+++..      .+.|++++.+|+..+.+. ..+..|+||++++..+.||++|.. .++|++.+++
T Consensus       131 ~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~-~~~~~pnGia~s~dg~~lyvad~~-~~~I~~~d~~  207 (319)
T d2dg1a1         131 CIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETT-ANRLHRIALE  207 (319)
T ss_dssp             CEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEEC
T ss_pred             CCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe-eccceeeeeeeccccceEEEeccc-CCceEEEEEc
Confidence            688999995 5689999875      346999999998766655 467889999999998899999965 4799999875


Q ss_pred             CC--ceEEE------EEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCC---CCCCCCeEEEEE--C
Q psy8875         622 GS--HRNMV------IVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSP---QTLSHPFSISTF--E  688 (734)
Q Consensus       622 G~--~~~~l------v~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~---~~~~~P~gl~v~--~  688 (734)
                      ..  .....      .......|.||++| .+++||++++..++|.+++.+|.....|....   .....+..+++.  .
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             CCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            43  22211      11334569999999 67889999999999999999998766664311   112245566663  3


Q ss_pred             CEEEEEeC-----CCCceEEEe
Q psy8875         689 DWLYWSDW-----QQKAIYKAN  705 (734)
Q Consensus       689 ~~lywtd~-----~~~~v~~~~  705 (734)
                      +.||++..     ..+.|++++
T Consensus       287 ~~~~~t~~~~~~~~~g~l~~~~  308 (319)
T d2dg1a1         287 NQLIICSNDIEMGGGSMLYTVN  308 (319)
T ss_dssp             CEEEEEEECGGGTCCEEEEEEE
T ss_pred             CEEEEEcCCCCcCCceeEEEEe
Confidence            56777642     234566664

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.43  E-value=1.8e-11  Score=125.72  Aligned_cols=216  Identities=12%  Similarity=0.122  Sum_probs=157.8

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeCCCCCcc
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEEDKTIAD  550 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~~~~~p~  550 (734)
                      -.||+++  .+.|++++.++. ...+......+.+|++++ .+.||+++...+.|+++.+.....  ..+........|.
T Consensus        39 G~l~vt~~~~~~I~~i~p~g~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n  116 (302)
T d2p4oa1          39 GTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN  116 (302)
T ss_dssp             SCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE
T ss_pred             CCEEEEeCCCCEEEEEeCCCC-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccccc
Confidence            3466655  467999988765 445556667899999997 567999999888888877664333  2233334566789


Q ss_pred             ceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc----------CCCCCceeEEEeCCCCeEEEEecCCCceEEEecc
Q psy8875         551 GLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR----------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGM  620 (734)
Q Consensus       551 glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~----------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l  620 (734)
                      +|++| ..+++|+++...++|++.++.+....+...          .....|.+|+.|  .++|||++.. ..+|+++++
T Consensus       117 ~i~~~-~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~-~~~i~~~~~  192 (302)
T d2p4oa1         117 GITPL-SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTE-KMLLLRIPV  192 (302)
T ss_dssp             EEEES-SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETT-TTEEEEEEB
T ss_pred             eeEEc-cCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCC-CCeEEeccc
Confidence            99999 568999999999999999998776555432          234577888887  4789999975 589999988


Q ss_pred             CCCceEE--EEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE-----ECCEEEE
Q psy8875         621 DGSHRNM--VIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST-----FEDWLYW  693 (734)
Q Consensus       621 dG~~~~~--lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v-----~~~~lyw  693 (734)
                      ++.....  .+......|.||++| ..++||+++...++|.+++.+|....++. ....+..|.++++     +.+.||+
T Consensus       193 ~~~~~~~~~~~~~~~~~pdgia~d-~dG~l~va~~~~~~V~~i~p~G~~~~~~~-~~~~~~~pt~vafg~~~~D~~~Lyv  270 (302)
T d2p4oa1         193 DSTDKPGEPEIFVEQTNIDDFAFD-VEGNLYGATHIYNSVVRIAPDRSTTIIAQ-AEQGVIGSTAVAFGQTEGDCTAIYV  270 (302)
T ss_dssp             CTTSCBCCCEEEEESCCCSSEEEB-TTCCEEEECBTTCCEEEECTTCCEEEEEC-GGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred             cccccccccccccCCCCCcceEEC-CCCCEEEEEcCCCcEEEECCCCCEEEEEe-cCCCCCCceEEEEcCCCCCCCEEEE
Confidence            7653221  112235679999999 46689999998999999999987555432 2234678999998     3367999


Q ss_pred             EeCCC
Q psy8875         694 SDWQQ  698 (734)
Q Consensus       694 td~~~  698 (734)
                      +..+.
T Consensus       271 tt~~g  275 (302)
T d2p4oa1         271 VTNGG  275 (302)
T ss_dssp             EECTT
T ss_pred             ECCCC
Confidence            87653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.34  E-value=6.1e-10  Score=112.09  Aligned_cols=242  Identities=13%  Similarity=0.111  Sum_probs=159.0

Q ss_pred             eeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee
Q psy8875         476 SLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA  553 (734)
                      ++|+++  ...|..+++...+....++....|.+|++++..++||+++...++|...++..+.....+ . ....|.+++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~-~~~~~~~~~   80 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-P-AGSSPQGVA   80 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-E-CSSSEEEEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-e-ccccccccc
Confidence            455554  456888888877766666666789999999988999999988999999998754433332 2 345789999


Q ss_pred             eeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc-----------------------------------------CCCCCc
Q psy8875         554 VDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR-----------------------------------------SYLDEP  592 (734)
Q Consensus       554 vD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~-----------------------------------------~~l~~P  592 (734)
                      +++.++.+|++......+.+.++........+.                                         .....|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP  160 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSE
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCc
Confidence            998888888888776666666554332221111                                         012335


Q ss_pred             eeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe--CCCCeEEEEecCCCceEE
Q psy8875         593 RSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD--AKLNEISSCDYNGGNRRL  670 (734)
Q Consensus       593 ~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D--~~~~~I~~~~~dG~~~~~  670 (734)
                      ..+++.+..++||++.... ..+.............+ .....|.++++++.+..+|++.  ...+.|..+++.......
T Consensus       161 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~  238 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDS-MSISVIDTVTNSVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA  238 (301)
T ss_dssp             EEEEECTTSSEEEEEETTT-TEEEEEETTTTEEEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred             eEEEeeccccceeeecccc-cccccccccceeeeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE
Confidence            5555555555555555321 23333333322222222 2235689999999999999875  445689988876544333


Q ss_pred             EEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEecccccCCCccC
Q psy8875         671 VLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITGVHQTHEPLNS  727 (734)
Q Consensus       671 i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~l~~P~~i  727 (734)
                      .+.   ....|.+|++  ++.+||++.+..+.|..++..+|+.+..+...   ..|.++
T Consensus       239 ~~~---~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~vg---~~P~~~  291 (301)
T d1l0qa2         239 RIP---VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVG---KNPYAS  291 (301)
T ss_dssp             EEE---CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEECC
T ss_pred             EEc---CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeCC---CCCcEe
Confidence            232   2357899999  45689999999999999998899887777532   345544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.23  E-value=1.3e-09  Score=111.28  Aligned_cols=209  Identities=11%  Similarity=0.109  Sum_probs=147.3

Q ss_pred             ceeeeee--ccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC----CCCC
Q psy8875         475 ASLLFAR--KHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE----DKTI  548 (734)
Q Consensus       475 ~~l~~~~--~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~----~~~~  548 (734)
                      ..|+|++  ...|+++++++.....+ .....+.+++++. .+.|+++.  ...|+++++.++. .+.+...    ....
T Consensus        30 ~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~~i~~~~-dg~l~va~--~~gl~~~d~~tg~-~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          30 GTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKIS-DSKQLIAS--DDGLFLRDTATGV-LTLHAELESDLPGNR  104 (295)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEE-TTEEEEEE--TTEEEEEETTTCC-EEEEECSSTTCTTEE
T ss_pred             CEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcEEEEEec-CCCEEEEE--eCccEEeecccce-eeEEeeeecCCCccc
Confidence            3567765  57799999888766544 2334677888775 56777764  4579999988554 3344321    2235


Q ss_pred             ccceeeeccCCcEEEEeCC------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCC
Q psy8875         549 ADGLAVDWIYSHIYWTDAH------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDG  622 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG  622 (734)
                      |..+++|+ .++||+++..      .+.+++.. +|+... +. ..+..|+++++++....|||+|.. ..+|++.++|+
T Consensus       105 ~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~-~~-~~~~~~Ng~~~s~d~~~l~~~dt~-~~~I~~~~~d~  179 (295)
T d2ghsa1         105 SNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDA  179 (295)
T ss_dssp             EEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCT
T ss_pred             ceeeEECC-CCCEEEEeccccccccceeEeeec-CCcEEE-Ee-eccCCcceeeecCCCceEEEeecc-cceeeEeeecc
Confidence            77899995 5789998743      23455554 444333 33 567789999999999999999965 58999998875


Q ss_pred             Cc------eEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE---CCEE
Q psy8875         623 SH------RNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF---EDWL  691 (734)
Q Consensus       623 ~~------~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~---~~~l  691 (734)
                      ..      +.+++.  .....|.||++| .+++||++.+..++|.+++.+|.....+.. +  ..+|..+++-   .+.|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~i~l-P--~~~~T~~~FGG~d~~~L  255 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEV-P--GKQTTCPAFIGPDASRL  255 (295)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEEC-S--CSBEEEEEEESTTSCEE
T ss_pred             cccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEeeEecC-C--CCceEEEEEeCCCCCEE
Confidence            32      333333  234679999999 677899999999999999999987776642 1  3578889884   3789


Q ss_pred             EEEeCC
Q psy8875         692 YWSDWQ  697 (734)
Q Consensus       692 ywtd~~  697 (734)
                      |+|.+.
T Consensus       256 yvTta~  261 (295)
T d2ghsa1         256 LVTSAR  261 (295)
T ss_dssp             EEEEBC
T ss_pred             EEEECC
Confidence            999764

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.6e-12  Score=86.65  Aligned_cols=38  Identities=47%  Similarity=1.101  Sum_probs=35.7

Q ss_pred             CCCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875          52 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        52 ~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      ++|+ +++|+|.+|.||+..|+|||..||.|||||.+|.
T Consensus         1 rtC~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~Cp   38 (39)
T d2fcwb1           1 KTCS-QAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP   38 (39)
T ss_dssp             CCCC-TTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHH
T ss_pred             CcCC-CCCEEcCCCCEEcchhcCcCcCcCcCCchhcCCC
Confidence            4788 8999999999999999999999999999999884

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.3e-12  Score=84.85  Aligned_cols=37  Identities=49%  Similarity=1.166  Sum_probs=34.7

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +|+ +++|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus         1 PC~-~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           1 PCS-AFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCC-TTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCC-CCceEcCCCCEECchhcCCCCCcCCCCchhhccC
Confidence            577 8999999999999999999999999999999883

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.6e-12  Score=85.08  Aligned_cols=37  Identities=41%  Similarity=0.907  Sum_probs=35.2

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCcccccc
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +|+ +++|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus         2 sC~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCR-PDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCC-TTEEECSSSCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCC-CCceEeCCCCeEChhhcCCCCCcCCCCchhccCc
Confidence            687 8999999999999999999999999999999884

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.3e-11  Score=84.13  Aligned_cols=38  Identities=50%  Similarity=1.101  Sum_probs=34.5

Q ss_pred             CCCCCCCCceecC--CCceecCcCccCCCCCCCCCCccccc
Q psy8875          51 SKPCRNSTMFRCT--GGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        51 ~~~C~~~~~f~C~--~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      +.+|+ +++|+|.  +++|||..|+|||+.||.|||||.+|
T Consensus         2 s~~C~-~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           2 SVTCK-SGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTTCC-SSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             ccccC-CCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            45898 8999995  57899999999999999999999987

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.9e-11  Score=83.95  Aligned_cols=39  Identities=41%  Similarity=1.017  Sum_probs=36.6

Q ss_pred             CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      ...+|+ +++|+|.+|+|||..|+|||+.||.|||||.+|
T Consensus         4 ~~~~C~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           4 VGDRCE-RNEFQCQDGKCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             SCCCCC-SSSEECSSSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             CCCccC-CCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCC
Confidence            467898 899999999999999999999999999999987

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.4e-11  Score=82.51  Aligned_cols=38  Identities=47%  Similarity=1.210  Sum_probs=35.1

Q ss_pred             CCCCCCCceecC-CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          52 KPCRNSTMFRCT-GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        52 ~~C~~~~~f~C~-~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      .+|+ +++|+|. +++||+..|+|||..||.|||||.+|.
T Consensus         2 ~~C~-~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCH-TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSS-TTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCC-CCceEcCCCCEEccchhcCCCcCcCCCcchhccCC
Confidence            5788 8999996 689999999999999999999999985

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.5e-11  Score=81.88  Aligned_cols=39  Identities=38%  Similarity=1.055  Sum_probs=35.3

Q ss_pred             CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875          92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC  130 (734)
Q Consensus        92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C  130 (734)
                      .+|.+++|+|..++++|||..|+|||+.||.||+||.+|
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            468899999976557899999999999999999999987

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-11  Score=81.67  Aligned_cols=36  Identities=42%  Similarity=1.032  Sum_probs=33.4

Q ss_pred             CCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          53 PCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        53 ~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      +|+ +++|+|.+|.|||..|+|||..||.|||||..+
T Consensus         2 tC~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   37 (39)
T d2fcwb2           2 TCG-PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ   37 (39)
T ss_dssp             HCC-TTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred             ccC-CCceEcCCCCeEChhhcCCCCCCCCCCCcCCCC
Confidence            577 889999999999999999999999999999754

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.05  E-value=2.3e-11  Score=82.93  Aligned_cols=37  Identities=43%  Similarity=1.026  Sum_probs=34.2

Q ss_pred             CCCCCCceecC--CCceecCcCccCCCCCCCCCCcccccc
Q psy8875          53 PCRNSTMFRCT--GGMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        53 ~C~~~~~f~C~--~g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +|+ +++|+|.  +|+||+..|+|||..||+|||||.+|.
T Consensus         2 ~C~-~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCD-EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSC-TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCC-cCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            688 8999996  579999999999999999999999984

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.1e-11  Score=80.21  Aligned_cols=36  Identities=44%  Similarity=1.040  Sum_probs=34.3

Q ss_pred             CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ++|.+++|+|.+|+||+.+|+|||..||.|||||.+
T Consensus         1 rtC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           1 KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             CcCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcC
Confidence            478999999999999999999999999999999987

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.8e-11  Score=80.36  Aligned_cols=38  Identities=37%  Similarity=1.109  Sum_probs=34.5

Q ss_pred             ccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        94 C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      |.+.+|+|.+++++|||..|+|||+.||.||+||.+|.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            67889999876568999999999999999999999994

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=4.6e-11  Score=82.94  Aligned_cols=38  Identities=53%  Similarity=1.171  Sum_probs=35.7

Q ss_pred             CCCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          51 SKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        51 ~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      ..+|+ +++|+|.+|.||+..|+|||+.||.|||||.+|
T Consensus         2 ~~~C~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           2 SHSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             CSSSC-TTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CccCC-CCcEEcCCCCEEChhhcCcCcccCCCCCcCCCC
Confidence            35788 899999999999999999999999999999987

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.8e-11  Score=82.20  Aligned_cols=39  Identities=38%  Similarity=0.926  Sum_probs=36.0

Q ss_pred             CCCCCCCCCceecCCCceecCcCccCCCCCCCCCCccccc
Q psy8875          50 RSKPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        50 ~~~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      ++.+|+ +++|+|.+|+||+..|+|||..||.|||||..+
T Consensus         2 ~p~~C~-~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           2 SPPQCQ-PGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCCBTT-BTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCcCC-CCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence            356788 899999999999999999999999999999866

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.7e-11  Score=78.13  Aligned_cols=35  Identities=54%  Similarity=1.264  Sum_probs=17.8

Q ss_pred             CCCCceecCCCCeecCCcccCCCCCCCCCCCCCCC
Q psy8875         265 CRSDEFTCANGNCIQRIWLCDGDDDCKDGSDEKSC  299 (734)
Q Consensus       265 C~~~~~~C~~g~Ci~~~~~Cdg~~dC~dgsDe~~C  299 (734)
                      |.+++|+|.+|+||+..|+|||..||.||+||.+|
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~C   36 (37)
T d1ajja_           2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCCceEcCCCCEECchhcCCCCCcCCCCchhhcc
Confidence            44445555555555555555555555555555444

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.6e-11  Score=80.01  Aligned_cols=36  Identities=47%  Similarity=1.175  Sum_probs=32.7

Q ss_pred             CCCCCceecCCC--ceecCcCccCCCCCCCCCCcccccc
Q psy8875          54 CRNSTMFRCTGG--MCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        54 C~~~~~f~C~~g--~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      |+ +.+|+|.+|  +|||..|+|||+.||+|||||.+|.
T Consensus         1 C~-~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CR-IHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CC-TTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CC-CCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            55 799999875  6999999999999999999999884

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=79.68  Aligned_cols=41  Identities=37%  Similarity=0.989  Sum_probs=37.5

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccccc
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI  430 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~  430 (734)
                      ||||+. ++.|+|+|+|++++|+|.|++||+|.+|+++|++|
T Consensus         1 idEC~~-~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~ai   41 (41)
T d1i0ua2           1 IDECQD-PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV   41 (41)
T ss_dssp             CCTTTT-TTSCSSCEECSSSCCEECCCTTEEECTTTCCEEEC
T ss_pred             CccCCC-CCCCCCEeECCCCCEEeECCCCCeECCCCCccccC
Confidence            589974 68899999999999999999999999999999865

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-10  Score=77.98  Aligned_cols=37  Identities=41%  Similarity=0.905  Sum_probs=34.5

Q ss_pred             cccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        93 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      +|.+.+|+|.+  |+|||..|+|||..||.||+||.+|.
T Consensus         2 sC~~~~f~C~~--g~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRPDEFQCSD--GNCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCTTEEECSS--SCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCCCceEeCC--CCeEChhhcCCCCCcCCCCchhccCc
Confidence            68899999987  68999999999999999999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=2.5e-07  Score=93.86  Aligned_cols=229  Identities=12%  Similarity=0.087  Sum_probs=151.4

Q ss_pred             eeeeee--ccceEEeecCCCc-eE--EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEE-EeCCCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHHE-MT--AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVV-IEEDKTI  548 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~~-~~--~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~-~~~~~~~  548 (734)
                      .+|+++  ++.|+..+++... ++  ..+.....+.+|+|++..+.||++....+.|...+++.+... +.+ .......
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            355555  4567777775432 22  333455778899999999999999988888887777644332 222 2224457


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEE--EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVL--VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l--~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      |.+|++++.++.||+++.....|.....+.......  .......|.+++++|...++|+++... ..|...+.......
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~-~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQ-DRICLFTVSDDGHL  163 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGG-TEEEEEEECTTSCE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccccc-ceeeEEEeccCCcc
Confidence            999999999999999998888888777665543333  234567899999999999999998653 56666555443322


Q ss_pred             EEE------EcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCC--ceE---EEEcC---CCCCCCCeEEEE--ECCE
Q psy8875         627 MVI------VSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGG--NRR---LVLYS---PQTLSHPFSIST--FEDW  690 (734)
Q Consensus       627 ~lv------~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~--~~~---~i~~~---~~~~~~P~gl~v--~~~~  690 (734)
                      ...      ......|..|++++....+|++....+.+....+...  ...   .+...   ......|.++++  .+.+
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            211      1234678999999999999999887777666665433  221   12111   122345666777  4568


Q ss_pred             EEEEeCCCCceEEEe
Q psy8875         691 LYWSDWQQKAIYKAN  705 (734)
Q Consensus       691 lywtd~~~~~v~~~~  705 (734)
                      +|.+....+.+..+.
T Consensus       244 ~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         244 LYACDRTASLITVFS  258 (333)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             eeeecccCCeEEEEE
Confidence            888888766555443

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.2e-11  Score=79.99  Aligned_cols=35  Identities=49%  Similarity=1.150  Sum_probs=33.4

Q ss_pred             CcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         134 TCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       134 ~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      +|++++|+|.+|.|||..|+|||..||.|||||.+
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            58889999999999999999999999999999987

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.97  E-value=4.4e-08  Score=102.78  Aligned_cols=213  Identities=16%  Similarity=0.164  Sum_probs=132.4

Q ss_pred             CcceEEEeeeccCCeEEEEEeC--CCcEEEEecCC-------------CCceEEE---EeCCCCCccceeeeccCCcEEE
Q psy8875         502 TKSATAIDFVFRTGMIFWSDIS--EKKIYKAPIDE-------------GSERTVV---IEEDKTIADGLAVDWIYSHIYW  563 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~--~~~I~~~~l~~-------------g~~~~~~---~~~~~~~p~glAvD~~~~~lY~  563 (734)
                      ...|..+++++..+.+|++...  .+.|+.+.+..             +......   .......|.++++++.++.||+
T Consensus        82 ~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v  161 (365)
T d1jofa_          82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEE
Confidence            3456667777777777776542  34444433221             1111111   1112345789999999999999


Q ss_pred             EeCCCCeEEEEeCCCCceEEE-----EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE-c------
Q psy8875         564 TDAHKNTIELANFEGTMRKVL-----VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV-S------  631 (734)
Q Consensus       564 td~~~~~I~~~~ldG~~~~~l-----~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~-~------  631 (734)
                      ++.+.++|.+...+.......     .......|++|+++|...+||++... ...|.+.+++......+.. .      
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-~~~V~v~~~~~~~~~~~~~~~~~~~~~  240 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-GNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-CCEEEEEEecCCCceEEEEeeeecccc
Confidence            999999998887654332221     12345789999999999999999854 4788888877654321111 0      


Q ss_pred             ------------CCCCceeEEEecCCCeEEEEeCCCC-----eEEEEecC--CCceE--EEEcCCCCCCCCeEEEEE---
Q psy8875         632 ------------DIKWPNGLTLDLVQRRLYWVDAKLN-----EISSCDYN--GGNRR--LVLYSPQTLSHPFSISTF---  687 (734)
Q Consensus       632 ------------~l~~P~glavD~~~~~LYw~D~~~~-----~I~~~~~d--G~~~~--~i~~~~~~~~~P~gl~v~---  687 (734)
                                  ...+|.+|+|++.+++||++....+     .|..+.++  |.-.+  .+........+|++|++.   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~  320 (365)
T d1jofa_         241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS  320 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred             ccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCC
Confidence                        0124678999999999999975433     25554443  43222  222222345789999984   


Q ss_pred             CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         688 EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       688 ~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.+||+++...+.|..++. +++....+.
T Consensus       321 G~~l~va~~~s~~v~v~~~-~~~~l~~~~  348 (365)
T d1jofa_         321 DEWMAITDDQEGWLEIYRW-KDEFLHRVA  348 (365)
T ss_dssp             TTEEEEECSSSCEEEEEEE-ETTEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEE-eCCcCcEEE
Confidence            5789999999897776643 344344443

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.7e-10  Score=79.57  Aligned_cols=36  Identities=36%  Similarity=0.758  Sum_probs=33.0

Q ss_pred             CCCCCCCceecCCCceecCcCccCCCCCCCCCCccc
Q psy8875          52 KPCRNSTMFRCTGGMCIPSTWVCDGQNDCPDGVDEK   87 (734)
Q Consensus        52 ~~C~~~~~f~C~~g~Ci~~~~~cdg~~dC~dg~de~   87 (734)
                      ..|..+++|+|.+|+||+..|+|||+.||+|||||.
T Consensus         4 ~~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~   39 (44)
T d1xfea2           4 TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP   39 (44)
T ss_dssp             SSCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSC
T ss_pred             CcCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccC
Confidence            457557999999999999999999999999999996

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.9e-10  Score=78.71  Aligned_cols=39  Identities=54%  Similarity=1.211  Sum_probs=35.8

Q ss_pred             CcccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          92 RICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        92 ~~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      .+|.+++|+|.++ ++||+..|+|||..||.||+||.+|+
T Consensus         2 ~~C~~~~f~C~~~-~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLD-GLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTT-CCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCCceEcCCC-CEEccchhcCCCcCcCCCcchhccCC
Confidence            4688999999865 79999999999999999999999995

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.96  E-value=5.9e-11  Score=80.86  Aligned_cols=39  Identities=33%  Similarity=0.924  Sum_probs=35.1

Q ss_pred             cccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCCC
Q psy8875          93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSCK  131 (734)
Q Consensus        93 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C~  131 (734)
                      +|.+++|+|..+.++|||..|+|||..||.||+||.+|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCc
Confidence            688999999754478999999999999999999999984

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.8e-07  Score=95.08  Aligned_cols=235  Identities=13%  Similarity=0.131  Sum_probs=151.7

Q ss_pred             eeeeee--ccceEEeecCCC--ceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc-eEEEEeCCCCC
Q psy8875         476 SLLFAR--KHDIRKISLDHH--EMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE-RTVVIEEDKTI  548 (734)
Q Consensus       476 ~l~~~~--~~~I~~i~l~~~--~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~-~~~~~~~~~~~  548 (734)
                      +|+++.  ...|+.+.++..  ..+.+  ......|.+|++++..+.||+++...+.|.......... ...........
T Consensus        50 ~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  129 (333)
T d1ri6a_          50 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDG  129 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTT
T ss_pred             EEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCcc
Confidence            355544  345665555433  22222  224456889999999999999998888777666653332 22223345567


Q ss_pred             ccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE------EEcCCCCCceeEEEeCCCCeEEEEecCCC-ceEEEeccC
Q psy8875         549 ADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV------LVRSYLDEPRSLALNPIDGWMYWSDWGQN-AKIERAGMD  621 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~------l~~~~l~~P~~iavD~~~g~LYwtd~~~~-~~I~~~~ld  621 (734)
                      |.++++++..+.+|+++.....|.+.++.......      ........|+.|++++....+|++..... ..++....+
T Consensus       130 ~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~  209 (333)
T d1ri6a_         130 CHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP  209 (333)
T ss_dssp             BCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred             ceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence            89999999999999999988888887765433221      12234578999999999999999985432 234443333


Q ss_pred             CCceEEEEE--------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--CCceEEEEcCCCCCCCCeEEEE--ECC
Q psy8875         622 GSHRNMVIV--------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--GGNRRLVLYSPQTLSHPFSIST--FED  689 (734)
Q Consensus       622 G~~~~~lv~--------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~i~~~~~~~~~P~gl~v--~~~  689 (734)
                      .........        .....|.++++++.+.++|.+....+.+..+.++  +...+..... .....|.+|++  .+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~a~spDGk  288 (333)
T d1ri6a_         210 HGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTETQPRGFNVDHSGK  288 (333)
T ss_dssp             TSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSSSCCCEEECTTSS
T ss_pred             ccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEe-CCCCCeeEEEEeCCCC
Confidence            332222111        1245678899998889999998877766655544  4433333221 23457888988  577


Q ss_pred             EEEEEeCCCCc--eEEEeccCCCc
Q psy8875         690 WLYWSDWQQKA--IYKANKFTGDN  711 (734)
Q Consensus       690 ~lywtd~~~~~--v~~~~~~~G~~  711 (734)
                      +||++....+.  |++++..+|+.
T Consensus       289 ~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         289 YLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEEECCCCeEEEEEEECCCCcE
Confidence            89999876665  55677777764

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.4e-10  Score=79.35  Aligned_cols=38  Identities=53%  Similarity=1.199  Sum_probs=35.3

Q ss_pred             CCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCCC
Q psy8875         132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPE  169 (734)
Q Consensus       132 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~  169 (734)
                      .+.|..++|+|.+|+||+.+|+|||..||.|||||...
T Consensus         3 p~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CCBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence            35789999999999999999999999999999999873

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.92  E-value=2.2e-10  Score=78.54  Aligned_cols=37  Identities=49%  Similarity=1.210  Sum_probs=33.0

Q ss_pred             CCCCCCceecCC-----CceecCcCccCCCCCCCCCCcccccc
Q psy8875          53 PCRNSTMFRCTG-----GMCIPSTWVCDGQNDCPDGVDEKKCQ   90 (734)
Q Consensus        53 ~C~~~~~f~C~~-----g~Ci~~~~~cdg~~dC~dg~de~~C~   90 (734)
                      +|+ +.+|+|.+     |+|||..|+|||..||+|||||.+|.
T Consensus         1 tC~-~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~CG   42 (42)
T d1k7ba_           1 SCP-PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   42 (42)
T ss_dssp             CCS-TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCC-cCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhccC
Confidence            477 89999964     47999999999999999999999883

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3e-10  Score=78.74  Aligned_cols=42  Identities=31%  Similarity=0.803  Sum_probs=38.8

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      |||||+..+..|++.|+|++++|+|.|++||+|.+++++|.|
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~C~D   43 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD   43 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSBEEC
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCcccC
Confidence            689999877788999999999999999999999999999975

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=2.5e-10  Score=79.92  Aligned_cols=42  Identities=45%  Similarity=0.967  Sum_probs=34.5

Q ss_pred             ccccccCCC---CCcCccccCCCcceeecCCCcEecCCCCccccc
Q psy8875         389 VDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDI  430 (734)
Q Consensus       389 ~~eC~~~~~---~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~  430 (734)
                      ||||+..++   .|+|+|+|++++|+|.|++||+|..|+++|..+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~~i   45 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL   45 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCccccC
Confidence            578877654   499999999999999999999999999999753

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.4e-10  Score=78.44  Aligned_cols=37  Identities=41%  Similarity=1.067  Sum_probs=34.9

Q ss_pred             CCCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         132 NRTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       132 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ...|.+++|+|.+|+|||.+|+|||..||.|||||.+
T Consensus         5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1           5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             CCCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTT
T ss_pred             CCccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCC
Confidence            4578999999999999999999999999999999987

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.88  E-value=1.6e-07  Score=98.32  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=134.0

Q ss_pred             ccceEEeecCCC--ceEEE----ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeee
Q psy8875         482 KHDIRKISLDHH--EMTAI----VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVD  555 (734)
Q Consensus       482 ~~~I~~i~l~~~--~~~~l----~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD  555 (734)
                      ...|+.+.++..  .++.+    ++....+..|++++..++||.++...-..+.++.+ +.............|..++++
T Consensus        13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~p~~v~~~   91 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSP-TEIVHEASHPIGGHPRANDAD   91 (365)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEET-TEEEEEEEEECCSSGGGGCTT
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCC-CCeEEEeeecCCCCcEEEEEC
Confidence            334666555433  23222    23344456799999999999997644344455444 222222222234579999999


Q ss_pred             ccCCcEEEEeCC--CCeEEEEeC--CCCceE------------EEE---cCCCCCceeEEEeCCCCeEEEEecCCCceEE
Q psy8875         556 WIYSHIYWTDAH--KNTIELANF--EGTMRK------------VLV---RSYLDEPRSLALNPIDGWMYWSDWGQNAKIE  616 (734)
Q Consensus       556 ~~~~~lY~td~~--~~~I~~~~l--dG~~~~------------~l~---~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~  616 (734)
                      +.++.+|++...  .+.|....+  ++....            ...   .....+|.+++++|...+||+++.+. .+|+
T Consensus        92 ~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~-d~v~  170 (365)
T d1jofa_          92 TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA-NKLW  170 (365)
T ss_dssp             SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT-TEEE
T ss_pred             CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCC-CEEE
Confidence            888888887653  455554432  221111            111   12344688999999999999999764 6787


Q ss_pred             EeccCCCceEEEEE-----cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc------CC----------
Q psy8875         617 RAGMDGSHRNMVIV-----SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY------SP----------  675 (734)
Q Consensus       617 ~~~ldG~~~~~lv~-----~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~------~~----------  675 (734)
                      +...+.......+.     ..-..|++|++++...+||++....+.|..++++......+..      ..          
T Consensus       171 ~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (365)
T d1jofa_         171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET  250 (365)
T ss_dssp             EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred             EEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccccccccc
Confidence            77665443322221     2235799999999999999999999999999987654322211      00          


Q ss_pred             -CCCCCCeEEEE--ECCEEEEEeCCCCc
Q psy8875         676 -QTLSHPFSIST--FEDWLYWSDWQQKA  700 (734)
Q Consensus       676 -~~~~~P~gl~v--~~~~lywtd~~~~~  700 (734)
                       .....|..|.+  .+.+||++.++.+.
T Consensus       251 ~~~~~~~~~i~~spdG~~lyvsnr~~~~  278 (365)
T d1jofa_         251 GKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             SSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             ccccCCccceEECCCCCEEEEEcccCCC
Confidence             01123456777  57899999876443

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.8e-10  Score=78.93  Aligned_cols=41  Identities=39%  Similarity=0.950  Sum_probs=36.9

Q ss_pred             ccccccCCC---CCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         389 VDECAKDNG---GCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       389 ~~eC~~~~~---~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      ||||+..++   +|+|+|+|++++|+|.|++||+|..|+++|.|
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            578887655   69999999999999999999999999999975

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.84  E-value=4.6e-10  Score=76.93  Aligned_cols=38  Identities=47%  Similarity=1.223  Sum_probs=32.9

Q ss_pred             cccCCceeccCC---CCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875          93 ICGQEEFTCRSS---PGECVPLTWMCDDNPDCSDGSDEKSC  130 (734)
Q Consensus        93 ~C~~~~~~C~~~---~~~Ci~~~~~Cdg~~dC~dg~de~~C  130 (734)
                      +|.+.+|+|.+.   +++|||..|+|||+.||.||+||.+|
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence            477889999753   24799999999999999999999988

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.2e-10  Score=76.08  Aligned_cols=38  Identities=34%  Similarity=0.754  Sum_probs=33.5

Q ss_pred             Ccc-cccCcCCCCceEeCccccCCCCCCCCCCCCCCCCc
Q psy8875         134 TCQ-ASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDPEMC  171 (734)
Q Consensus       134 ~C~-~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~~~C  171 (734)
                      .|. +.+|+|.+|+||+..|+|||..||.|||||...+|
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   43 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC   43 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccCcccC
Confidence            454 58999999999999999999999999999986443

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=4e-10  Score=76.19  Aligned_cols=39  Identities=44%  Similarity=1.118  Sum_probs=36.3

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      +|||..++++|+|+|+|++++|+|.|++||+|. |+++|+
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~tC~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRCE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTEEC
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCcCC
Confidence            689999999999999999999999999999996 888884

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.83  E-value=7.9e-10  Score=74.98  Aligned_cols=37  Identities=30%  Similarity=0.769  Sum_probs=33.3

Q ss_pred             ccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCCC
Q psy8875          94 CGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKSC  130 (734)
Q Consensus        94 C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~C  130 (734)
                      |++.+|+|.+.+++|||..|+|||..||.|||||..+
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~   38 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD   38 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCccccc
Confidence            7889999986557999999999999999999999765

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.83  E-value=9.7e-10  Score=74.54  Aligned_cols=35  Identities=37%  Similarity=0.854  Sum_probs=31.6

Q ss_pred             CCCCCceecC--CCceecCcCccCCCCCCCCCCccccc
Q psy8875          54 CRNSTMFRCT--GGMCIPSTWVCDGQNDCPDGVDEKKC   89 (734)
Q Consensus        54 C~~~~~f~C~--~g~Ci~~~~~cdg~~dC~dg~de~~C   89 (734)
                      |+ +++|+|.  +|.|||..|+|||+.||+|||||..+
T Consensus         2 C~-~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~   38 (41)
T d2gtln2           2 CE-KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD   38 (41)
T ss_dssp             SC-TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred             CC-CCeeECCCcCCCeechHHcCCCCccCCCCCccccc
Confidence            66 8999996  47999999999999999999999754

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.2e-09  Score=74.61  Aligned_cols=41  Identities=54%  Similarity=1.271  Sum_probs=37.6

Q ss_pred             ccCcCCCCCcccceeccCCceEEecCCCeeeCCCCCcccccc
Q psy8875         430 IDECETPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAA  471 (734)
Q Consensus       430 ~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~  471 (734)
                      ||||+.+++|+|+|+|++|+|+|.|++||.+.+++++ |+++
T Consensus         1 idEC~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~-C~ai   41 (41)
T d1i0ua2           1 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKA-CKAV   41 (41)
T ss_dssp             CCTTTTTTSCSSCEECSSSCCEECCCTTEEECTTTCC-EEEC
T ss_pred             CccCCCCCCCCCEeECCCCCEEeECCCCCeECCCCCc-cccC
Confidence            6899988999999999999999999999999998877 8763

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.81  E-value=8.8e-10  Score=75.17  Aligned_cols=35  Identities=40%  Similarity=0.876  Sum_probs=31.4

Q ss_pred             CCCCCCceecCC--CceecCcCccCCCCCCCCCCcccc
Q psy8875          53 PCRNSTMFRCTG--GMCIPSTWVCDGQNDCPDGVDEKK   88 (734)
Q Consensus        53 ~C~~~~~f~C~~--g~Ci~~~~~cdg~~dC~dg~de~~   88 (734)
                      .|+ +++|+|.+  |+|||..|+|||+.||+|||||..
T Consensus         2 ~C~-~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           2 HCD-EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCC-TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCC-CCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            477 89999974  789999999999999999999953

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=5.2e-10  Score=77.53  Aligned_cols=36  Identities=50%  Similarity=1.303  Sum_probs=34.5

Q ss_pred             CCcccccCcCCCCceEeCccccCCCCCCCCCCCCCC
Q psy8875         133 RTCQASEFRCGNNRCIPNHWQCDGEFDCSDKSDEDP  168 (734)
Q Consensus       133 ~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~  168 (734)
                      ++|++++|+|.+|.|||..|+|||..||.|||||.+
T Consensus         3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   38 (44)
T d1j8ea_           3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCC
Confidence            578999999999999999999999999999999987

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.80  E-value=1e-09  Score=74.82  Aligned_cols=37  Identities=41%  Similarity=0.846  Sum_probs=33.0

Q ss_pred             cccCCceeccCCCCeeeCCCCCCCCCCCCCCCCCcCC
Q psy8875          93 ICGQEEFTCRSSPGECVPLTWMCDDNPDCSDGSDEKS  129 (734)
Q Consensus        93 ~C~~~~~~C~~~~~~Ci~~~~~Cdg~~dC~dg~de~~  129 (734)
                      .|++.+|+|.+++++|||..|+|||+.||.|||||..
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            4788999998655789999999999999999999964

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.4e-09  Score=74.25  Aligned_cols=40  Identities=30%  Similarity=0.700  Sum_probs=35.7

Q ss_pred             ccccc-CCCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         390 DECAK-DNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       390 ~eC~~-~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      |||+. .+++|+|+|+|++++|+|.|++||.|.+|+++|..
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCeecC
Confidence            58874 45789999999999999999999999999999963

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=98.77  E-value=8.7e-07  Score=88.18  Aligned_cols=187  Identities=13%  Similarity=0.136  Sum_probs=131.7

Q ss_pred             CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCcee
Q psy8875         515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRS  594 (734)
Q Consensus       515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~  594 (734)
                      ..+|+++...+.|..+++..+..... +. .-..|.+||+++.+++||++....++|.+.++........+ .....|.+
T Consensus         2 ~~~yV~~~~~~~v~v~D~~t~~~~~~-i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~-~~~~~~~~   78 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVTSNKVTAT-IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV-PAGSSPQG   78 (301)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE-ECSSSEEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEE-EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeee-eccccccc
Confidence            36889988889999999875543332 23 23579999999999999999998899999999755443333 33457999


Q ss_pred             EEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC
Q psy8875         595 LALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS  674 (734)
Q Consensus       595 iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~  674 (734)
                      +++++...++|.+... ...+...++........+ .....|..+++++.+.+++.+......+...+.........+. 
T Consensus        79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  155 (301)
T d1l0qa2          79 VAVSPDGKQVYVTNMA-SSTLSVIDTTSNTVAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS-  155 (301)
T ss_dssp             EEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-
T ss_pred             cccccccccccccccc-cceeeecccccceeeeec-cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc-
Confidence            9999988888888765 356666666554333333 3455688999998899999998877778777766554444332 


Q ss_pred             CCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCC
Q psy8875         675 PQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTG  709 (734)
Q Consensus       675 ~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G  709 (734)
                        ....|..+++  .+.++|++......+........
T Consensus       156 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (301)
T d1l0qa2         156 --VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN  190 (301)
T ss_dssp             --CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             --cCCCceEEEeeccccceeeecccccccccccccce
Confidence              2356777777  45678888777665555544333

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1.1e-09  Score=75.14  Aligned_cols=41  Identities=39%  Similarity=0.771  Sum_probs=37.4

Q ss_pred             cccccccCCCCCcC-ccccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      |||||+..+..|.+ +|+|++|+|+|.|++||+|..++++|.
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCCCC
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCccC
Confidence            58999988888876 899999999999999999998988874

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.8e-09  Score=72.77  Aligned_cols=41  Identities=32%  Similarity=0.729  Sum_probs=36.1

Q ss_pred             c-cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         387 C-GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       387 C-~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      | |+|||+..+..|.++|+|++|+|+|.|++||.|  ++++|.|
T Consensus         2 CvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~--~g~~C~D   43 (43)
T d1emoa1           2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD   43 (43)
T ss_dssp             CCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEE--SSSCEEE
T ss_pred             CcceeccCCcCCCCCCEeECCCCCeEeECCCCccc--CCCcccC
Confidence            5 899999877888999999999999999999998  5667764

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=3.6e-09  Score=75.83  Aligned_cols=42  Identities=31%  Similarity=0.820  Sum_probs=39.2

Q ss_pred             cccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      |..++++|+|+|++++++|+|.|++||.|.+|+++|+++++|
T Consensus         1 C~~~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           1 CSLDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             CCTTTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            556789999999999999999999999999999999999886

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.4e-09  Score=74.99  Aligned_cols=41  Identities=32%  Similarity=0.780  Sum_probs=36.9

Q ss_pred             cccccccCCCCCc-CccccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCL-HKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~-~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      |||||+..++.|. +.|+|++|+|+|.|++||+|..++++|.
T Consensus         2 DinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           2 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             ECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCBBC
T ss_pred             CcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCccC
Confidence            6899998777875 7899999999999999999999998884

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.2e-09  Score=76.60  Aligned_cols=42  Identities=40%  Similarity=0.998  Sum_probs=34.9

Q ss_pred             cccccccCCC--------CCcCccccCCCcceeecCCCcEecCCCCcccc
Q psy8875         388 GVDECAKDNG--------GCLHKCVDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       388 ~~~eC~~~~~--------~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      |||||+..+.        .|+|.|+|++|+|+|.|++||+|..|+++|+.
T Consensus         3 DidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_           3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSCEEC
T ss_pred             ecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCceec
Confidence            5677765433        46789999999999999999999999999963

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.6e-09  Score=74.74  Aligned_cols=42  Identities=36%  Similarity=0.755  Sum_probs=38.2

Q ss_pred             cccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      |..++++|+|+|++++++|+|+|++||+|.+|+++|++++++
T Consensus         2 C~~~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~~   43 (50)
T d1autl2           2 CSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF   43 (50)
T ss_dssp             SSSGGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCCCCCCcccEeecCCCCeEEECCCCCEECCCCCccccCCCC
Confidence            566789999999999999999999999999999999987663

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.62  E-value=1.3e-05  Score=80.58  Aligned_cols=228  Identities=8%  Similarity=-0.032  Sum_probs=140.5

Q ss_pred             ccceEEeecCCCceEEEec---CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC----CCCccceee
Q psy8875         482 KHDIRKISLDHHEMTAIVN---STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED----KTIADGLAV  554 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~~l~~---~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~----~~~p~glAv  554 (734)
                      ...|..+++........++   ....|.+|++.+..+.||++....+.|+.+++..+.....+....    ...+.++++
T Consensus        10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~   89 (337)
T d1pbyb_          10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEE
Confidence            4678888887666544333   235678899998888899998888899999998655433332111    235779999


Q ss_pred             eccCCcEEEEeCC-----------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-------CCceEE
Q psy8875         555 DWIYSHIYWTDAH-----------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-------QNAKIE  616 (734)
Q Consensus       555 D~~~~~lY~td~~-----------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-------~~~~I~  616 (734)
                      .+..+.||++...           ...+.+.++........+ .....|.++++++...+||.+...       ....+.
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~  168 (337)
T d1pbyb_          90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF-EAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVE  168 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE-ECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEE
T ss_pred             cCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec-cccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEE
Confidence            9999999998642           345666666554433333 234578999999988888887521       000111


Q ss_pred             Eecc-----------CC--------------------------------------------CceEEEEEcCCCCceeEEE
Q psy8875         617 RAGM-----------DG--------------------------------------------SHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       617 ~~~l-----------dG--------------------------------------------~~~~~lv~~~l~~P~glav  641 (734)
                      ....           ++                                            ..........-..+..+++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (337)
T d1pbyb_         169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAV  248 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEE
T ss_pred             EeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEe
Confidence            1111           00                                            0000001111223444556


Q ss_pred             ecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         642 DLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       642 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      .+....+|..+   +.|..+++........+.   ....|.+|++  .+.+||++... +.|..++..+++.+..|..
T Consensus       249 ~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~-~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         249 NPAKTRAFGAY---NVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGAL-GDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CTTSSEEEEEE---SEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBS-SEEEEEETTTCCEEEEEEC
T ss_pred             cccceEEEEcc---ccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCC-CcEEEEECCCCcEEEEEEC
Confidence            55556666554   467777766544333332   2356889998  46778887654 6788999989988888754

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=5.6e-09  Score=74.62  Aligned_cols=42  Identities=33%  Similarity=0.791  Sum_probs=38.3

Q ss_pred             cccCCCCCcCccccCCCcceeecCCCcEecCCCCccccccCc
Q psy8875         392 CAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      |..++++|+|+|++++++|+|.|++||+|.+|+++|.+++++
T Consensus         3 C~~~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~~   44 (51)
T d2p3ua1           3 CSLDNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY   44 (51)
T ss_dssp             GGTGGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSS
T ss_pred             cCCCCCCcccEeecCCCCeEeEcCCCCEECCCCCccccCCcc
Confidence            566789999999999999999999999999999999987654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.59  E-value=2e-06  Score=92.27  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=106.9

Q ss_pred             CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-C------CCccceeeec---cCCcE
Q psy8875         492 HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-K------TIADGLAVDW---IYSHI  561 (734)
Q Consensus       492 ~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-~------~~p~glAvD~---~~~~l  561 (734)
                      +-..+.++.++..|.+|+|.+ .++||+++...++|++++..++...++..... .      ....+||+|+   .++.|
T Consensus        16 ~f~~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i   94 (450)
T d1crua_          16 NFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (450)
T ss_dssp             TSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CcEEEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence            345677788899999999987 57899999778899999877554433322111 1      1223699987   36788


Q ss_pred             EEEeCC------------CCeEEEEeCCCCc-----eEEEEc----CCCCCceeEEEeCCCCeEEEEecC----------
Q psy8875         562 YWTDAH------------KNTIELANFEGTM-----RKVLVR----SYLDEPRSLALNPIDGWMYWSDWG----------  610 (734)
Q Consensus       562 Y~td~~------------~~~I~~~~ldG~~-----~~~l~~----~~l~~P~~iavD~~~g~LYwtd~~----------  610 (734)
                      |++-..            ...|.+...+...     .++++.    .....-..|++++ .|+||++--.          
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~  173 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF  173 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccc
Confidence            886321            1134444444322     222322    2234556899997 6899998521          


Q ss_pred             ---------------------CCceEEEeccCCCce----------EEEEEcCCCCceeEEEecCCCeEEEEeCC
Q psy8875         611 ---------------------QNAKIERAGMDGSHR----------NMVIVSDIKWPNGLTLDLVQRRLYWVDAK  654 (734)
Q Consensus       611 ---------------------~~~~I~~~~ldG~~~----------~~lv~~~l~~P~glavD~~~~~LYw~D~~  654 (734)
                                           ..++|.|++.||+..          ..+....+..|.||++|+ +++||++|.+
T Consensus       174 ~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G  247 (450)
T d1crua_         174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQG  247 (450)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEEC
T ss_pred             cccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeecccc
Confidence                                 127899999998752          235677899999999996 7899999864

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.3e-09  Score=71.01  Aligned_cols=35  Identities=43%  Similarity=0.821  Sum_probs=31.8

Q ss_pred             cccCcCCCCCcccceeccCCceEEecCCCeeeCCC
Q psy8875         429 DIDECETPGSCSQICLNEKGGFKCECVAGYIKDPH  463 (734)
Q Consensus       429 ~~~eC~~~~~C~~~C~n~~g~~~C~C~~gy~~~~~  463 (734)
                      |||||+.+++|+|+|+|++|+|.|.|++||.+...
T Consensus         1 DidEC~~~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~   35 (40)
T d1dx5i3           1 DIDECENGGFCSGVCHNLPGTFECICGPDSALAGQ   35 (40)
T ss_dssp             ECCHHHHCSSCSSEEEECSSSEEEEECSSSSCEEE
T ss_pred             CccccCCCcCccCEeeCCCCCeEeECCCCCeeCCC
Confidence            68999888999999999999999999999998643

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.7e-08  Score=69.38  Aligned_cols=41  Identities=32%  Similarity=0.827  Sum_probs=35.3

Q ss_pred             cccccccCCCCCcC-ccccCCCcceeecCCCcEec-CCCCccc
Q psy8875         388 GVDECAKDNGGCLH-KCVDLPVGYMCECNEGYKLS-SNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l~-~~~~~C~  428 (734)
                      |||||+..+..|.+ .|+|++|+|+|.|++||++. .+++.|.
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEE
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCCCCCCcCC
Confidence            68999988888876 89999999999999999986 4677763

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.4e-09  Score=70.41  Aligned_cols=39  Identities=31%  Similarity=0.723  Sum_probs=32.5

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEec-CCCCcc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLS-SNRHTC  427 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~-~~~~~C  427 (734)
                      |||||+. ++.|+|.|+|++++|+|.|++||+|. .++++|
T Consensus         1 DidEC~~-~~~C~~~C~N~~Gsy~C~C~~Gy~l~g~~~~~C   40 (40)
T d1dx5i3           1 DIDECEN-GGFCSGVCHNLPGTFECICGPDSALAGQIGTDC   40 (40)
T ss_dssp             ECCHHHH-CSSCSSEEEECSSSEEEEECSSSSCEEEESCCC
T ss_pred             CccccCC-CcCccCEeeCCCCCeEeECCCCCeeCCCCCCCC
Confidence            5899985 57899999999999999999999985 234443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.49  E-value=3.3e-06  Score=86.88  Aligned_cols=147  Identities=12%  Similarity=0.016  Sum_probs=97.7

Q ss_pred             CCccceeeecc---CCcEEEEeC--CCCeEEEEeCCCCc-----eEEEEcCCCCCceeEEEeCCCCeEEEEecCC-----
Q psy8875         547 TIADGLAVDWI---YSHIYWTDA--HKNTIELANFEGTM-----RKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-----  611 (734)
Q Consensus       547 ~~p~glAvD~~---~~~lY~td~--~~~~I~~~~ldG~~-----~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-----  611 (734)
                      ..|.||.+-..   ...||+.+.  ...+|++..++...     +..+....+..|++|++.. .|.+|+|+...     
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPY  175 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCCSHH
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec-CCCEEEecCccCcChh
Confidence            46899987322   225888876  35678777664322     1223345678899999986 67899996321     


Q ss_pred             ---------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCe
Q psy8875         612 ---------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPF  682 (734)
Q Consensus       612 ---------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~  682 (734)
                               .+...+...++...++++ +.+..||||++++.++.||++++..++|.++.+++...............|.
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pD  254 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVD  254 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEE
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCC
Confidence                     122334444565555444 5688999999999999999999999999999988764333222112345689


Q ss_pred             EEEEE--CCEEEEEe
Q psy8875         683 SISTF--EDWLYWSD  695 (734)
Q Consensus       683 gl~v~--~~~lywtd  695 (734)
                      .|.++  ++.+|++-
T Consensus       255 Ni~~d~~~g~lwva~  269 (340)
T d1v04a_         255 NISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEECTTTCCEEEEE
T ss_pred             ccEEecCCCEEEEEE
Confidence            99995  35666653

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.5e-08  Score=70.99  Aligned_cols=42  Identities=36%  Similarity=0.933  Sum_probs=35.2

Q ss_pred             ccccCcCCC---------CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         428 IDIDECETP---------GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       428 ~~~~eC~~~---------~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      +|||||+..         ..|+|+|+|++|+|.|.|++||.+..++++ |++
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~t-C~~   52 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHS-CQA   52 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSSC-EEC
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCCc-eec
Confidence            478899642         236889999999999999999999998877 875

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.7e-08  Score=70.58  Aligned_cols=39  Identities=26%  Similarity=0.750  Sum_probs=34.8

Q ss_pred             cccccCCCCCcCcccc------CCCcceeecCCCcEecCCCCccc
Q psy8875         390 DECAKDNGGCLHKCVD------LPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~------~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      +||..++++|+|+|+.      +.++|+|.|++||+|.+|+++|.
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL   49 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEE
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCccc
Confidence            5788889999999974      45799999999999999999996

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=5.6e-08  Score=66.12  Aligned_cols=39  Identities=31%  Similarity=0.749  Sum_probs=34.5

Q ss_pred             cCcCC--CCCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         431 DECET--PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       431 ~eC~~--~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      |||+.  .+.|+|+|+|++|+|+|.|++||.+..++++ |++
T Consensus         1 dEC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~t-C~~   41 (42)
T d1nzia2           1 NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKN-CGV   41 (42)
T ss_dssp             CTTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSC-EEC
T ss_pred             CCCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCe-ecC
Confidence            68864  3789999999999999999999999999887 865

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=6.7e-08  Score=66.58  Aligned_cols=40  Identities=30%  Similarity=0.785  Sum_probs=34.3

Q ss_pred             cccCcCCC-CCcccceeccCCceEEecCCCeeeCCCCCcccc
Q psy8875         429 DIDECETP-GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK  469 (734)
Q Consensus       429 ~~~eC~~~-~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~  469 (734)
                      |||||+.+ ..|+++|+|++|+|.|.|++||.+..++++ |.
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~-C~   42 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVG-CV   42 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTTSSB-EE
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCCCCc-cc
Confidence            79999765 456789999999999999999999987665 64

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.1e-08  Score=66.96  Aligned_cols=37  Identities=38%  Similarity=0.917  Sum_probs=32.4

Q ss_pred             ccccccCcCCC-CCcccceeccCCceEEecCCCeeeCC
Q psy8875         426 TCIDIDECETP-GSCSQICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       426 ~C~~~~eC~~~-~~C~~~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      +|.|||||+.+ ..|.++|+|++|+|.|.|++||.++.
T Consensus         1 sCvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g   38 (43)
T d1emoa1           1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG   38 (43)
T ss_dssp             CCCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESS
T ss_pred             CCcceeccCCcCCCCCCEeECCCCCeEeECCCCcccCC
Confidence            58999999865 45678999999999999999999864

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.43  E-value=5.8e-08  Score=67.60  Aligned_cols=40  Identities=43%  Similarity=0.963  Sum_probs=33.2

Q ss_pred             ccCcCCC----CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         430 IDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       430 ~~eC~~~----~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      ||||+..    ..|+|+|+|++|+|+|.|++||.+..++++ |.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~t-C~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHT-CSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSSC-EEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCCc-ccc
Confidence            6888643    359999999999999999999999998877 865

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.1e-08  Score=66.83  Aligned_cols=40  Identities=43%  Similarity=0.999  Sum_probs=34.6

Q ss_pred             ccCcCCC----CCcccceeccCCceEEecCCCeeeCCCCCccccc
Q psy8875         430 IDECETP----GSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       430 ~~eC~~~----~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      ||||+..    ..|+|+|+|++|+|+|.|++||.+..++++ |.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~t-C~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRT-CSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSSC-EEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCCC-ccC
Confidence            6889754    259999999999999999999999998887 864

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.38  E-value=8.7e-05  Score=78.68  Aligned_cols=191  Identities=10%  Similarity=-0.030  Sum_probs=135.2

Q ss_pred             eeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeec--
Q psy8875         480 ARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDW--  556 (734)
Q Consensus       480 ~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~--  556 (734)
                      .....|..+++........++....|.+++|.+..++||.+. ..+.|...++..+....+. +. ....|.++++.+  
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s-~dg~v~~~d~~t~~~~~~~~i~-~~~~~~~~~~s~~~  116 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIG-RDGKVNMIDLWMKEPTTVAEIK-IGSEARSIETSKME  116 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCCEEEEEE-CCSEEEEEEECCST
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEc-CCCCEEEEEeeCCCceEEEEEe-cCCCCCCeEEeccc
Confidence            345678888888777766666556899999999999998875 4678999988755543322 22 334677777643  


Q ss_pred             --cCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-----------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCC
Q psy8875         557 --IYSHIYWTDAHKNTIELANFEGTMRKVLVRS-----------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGS  623 (734)
Q Consensus       557 --~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-----------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~  623 (734)
                        .++.||.+....+.|.+.+.........+..           ....+.+|+..+...++||+... .+.|...++...
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-~~~i~~~d~~~~  195 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-TGKILLVDYTDL  195 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEETTCS
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-CCeEEEEEccCC
Confidence              4677999998889999999876544333221           12345578888888888888754 478888877543


Q ss_pred             c-eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc
Q psy8875         624 H-RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       624 ~-~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~  673 (734)
                      . .++.-...-..|.++++++.+.+||.+....+.|..++.+.......+.
T Consensus       196 ~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         196 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             CcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            3 2322222345789999999999999999888899999988776655544

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=7.1e-08  Score=70.35  Aligned_cols=43  Identities=30%  Similarity=0.716  Sum_probs=38.2

Q ss_pred             ccccCCCCCcCccccCCC-cceeecCCCcEecCCCCccccccCc
Q psy8875         391 ECAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDIDEC  433 (734)
Q Consensus       391 eC~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~eC  433 (734)
                      .|..++++|+|+|+++++ +|+|.|++||+|.+|+++|..++++
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f   45 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF   45 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence            467778999999999975 7999999999999999999987764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.35  E-value=6e-05  Score=77.17  Aligned_cols=196  Identities=12%  Similarity=0.073  Sum_probs=118.5

Q ss_pred             cceEEEeeecc---CCeEEEEEe--CCCcEEEEecCCCCce----EEEEeCCCCCccceeeeccCCcEEEEeCC------
Q psy8875         503 KSATAIDFVFR---TGMIFWSDI--SEKKIYKAPIDEGSER----TVVIEEDKTIADGLAVDWIYSHIYWTDAH------  567 (734)
Q Consensus       503 ~~~~~i~~d~~---~~~lyw~d~--~~~~I~~~~l~~g~~~----~~~~~~~~~~p~glAvD~~~~~lY~td~~------  567 (734)
                      -.|.||++...   ..+||+++-  ...+|-.+.++.+...    ..+....+..|..|++. ..+.+|+|+..      
T Consensus        97 f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~-~~g~fy~Tnd~~~~~~~  175 (340)
T d1v04a_          97 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPEHFYATNDHYFIDPY  175 (340)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETTEEEEEESCSCCSHH
T ss_pred             eeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe-cCCCEEEecCccCcChh
Confidence            47889887432   225777764  2334444444322322    12223456789999998 56789999642      


Q ss_pred             ---------CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE--EEcCCCCc
Q psy8875         568 ---------KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV--IVSDIKWP  636 (734)
Q Consensus       568 ---------~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l--v~~~l~~P  636 (734)
                               .....+...+++..+++. ..+..|+||+++|...+||+++.. ..+|.+..+++......  ...--..|
T Consensus       176 ~~~~e~~~~~~~g~v~~~~~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t~-~~~i~~y~~~~~~~l~~~~~~~l~~~p  253 (340)
T d1v04a_         176 LKSWEMHLGLAWSFVTYYSPNDVRVVA-EGFDFANGINISPDGKYVYIAELL-AHKIHVYEKHANWTLTPLRVLSFDTLV  253 (340)
T ss_dssp             HHHHHHHTTCCCEEEEEECSSCEEEEE-EEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEECTTSCEEEEEEEECSSEE
T ss_pred             hhhhhHhhcCCceeEEEEcCCceEEEc-CCCCccceeEECCCCCEEEEEeCC-CCeEEEEEeCCCcccceEEEecCCCCC
Confidence                     133455555666666555 568899999999999999999975 47899888876553322  22233558


Q ss_pred             eeEEEecCCCeEEEEeCC--------------CCeEEEEe-cC--CCceEEEEcCC-CCCCCCeEEEEECCEEEEEeCCC
Q psy8875         637 NGLTLDLVQRRLYWVDAK--------------LNEISSCD-YN--GGNRRLVLYSP-QTLSHPFSISTFEDWLYWSDWQQ  698 (734)
Q Consensus       637 ~glavD~~~~~LYw~D~~--------------~~~I~~~~-~d--G~~~~~i~~~~-~~~~~P~gl~v~~~~lywtd~~~  698 (734)
                      ..|.+|..++.|+.+-..              ...+.++. ..  +...+.++... ..+.........+++||+.....
T Consensus       254 DNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~~~~~G~~~~~~T~a~~~~g~L~iGs~~~  333 (340)
T d1v04a_         254 DNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFH  333 (340)
T ss_dssp             EEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSSCSEEEEEEETTEEEEEESSS
T ss_pred             CccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEEEeCCCcEeeceEEEEEECCEEEEEeeeC
Confidence            999999778887776311              11345543 22  22333333322 22333333334889999987665


Q ss_pred             Cce
Q psy8875         699 KAI  701 (734)
Q Consensus       699 ~~v  701 (734)
                      ..|
T Consensus       334 ~~l  336 (340)
T d1v04a_         334 KAL  336 (340)
T ss_dssp             CEE
T ss_pred             Cce
Confidence            544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.33  E-value=0.00023  Score=74.83  Aligned_cols=191  Identities=7%  Similarity=-0.041  Sum_probs=128.3

Q ss_pred             eccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeec----
Q psy8875         481 RKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDW----  556 (734)
Q Consensus       481 ~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~----  556 (734)
                      .+..|+.+++........++....+.+|+|.+..++||.+. ..+.|...+++.+....+..-.....|.++++..    
T Consensus        40 ~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~-~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~sp  118 (426)
T d1hzua2          40 DAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIG-RDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGY  118 (426)
T ss_dssp             TTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEE-TTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTC
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEe-CCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecC
Confidence            35788888888766655555556799999999888888775 4578899998865543322112334567776653    


Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-----------CCCceeEEEeCCCCeEEEEecCCCceEEEecc-CCCc
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-----------LDEPRSLALNPIDGWMYWSDWGQNAKIERAGM-DGSH  624 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-----------l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~l-dG~~  624 (734)
                      .++.||.+....+.|.+.++.......++...           ...+..++..+....++|+..+ ...|..... ++..
T Consensus       119 DG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-~~~i~~~~~~~~~~  197 (426)
T d1hzua2         119 EDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLLVNYKDIDN  197 (426)
T ss_dssp             TTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEECSSSSS
T ss_pred             CCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-CCeEEEEEeccccc
Confidence            46778999888888888887665544333221           2234566777767777777754 355655544 3333


Q ss_pred             eEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEc
Q psy8875         625 RNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       625 ~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~  673 (734)
                      ..+.....-..|.++++++..+++|++....+.+..++...........
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         198 LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             eeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            3333334556799999999999999999888899988876655544443

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-07  Score=65.17  Aligned_cols=40  Identities=43%  Similarity=1.036  Sum_probs=33.7

Q ss_pred             ccccCcCC-CCCcc-cceeccCCceEEecCCCeeeCCCCCccc
Q psy8875         428 IDIDECET-PGSCS-QICLNEKGGFKCECVAGYIKDPHHPTQC  468 (734)
Q Consensus       428 ~~~~eC~~-~~~C~-~~C~n~~g~~~C~C~~gy~~~~~~~t~C  468 (734)
                      +|||||+. ++.|. ++|+|++|+|.|.|++||.+..++++ |
T Consensus         1 qDinEC~~~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~~-C   42 (43)
T d1uzka2           1 EDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRV-C   42 (43)
T ss_dssp             EECCHHHHCGGGGBTSEEEECSSCEEEECCTTCCBCTTTCB-B
T ss_pred             CCcccccCCCCCcCCCEEECCCCCeEeECCCCCeECcCCCc-c
Confidence            48999974 46665 79999999999999999999887665 5

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.25  E-value=4.1e-05  Score=80.67  Aligned_cols=197  Identities=12%  Similarity=0.020  Sum_probs=123.5

Q ss_pred             EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEE---------------
Q psy8875         508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIE---------------  572 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~---------------  572 (734)
                      .+..+..++||++|..+.+|.+++++.+....++.-.....|.++++.+..+.+|++......+.               
T Consensus        77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred             ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence            33445588999999999999999998554444443334678999999988899999876544442               


Q ss_pred             ---EEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCc-------------eEEEe---------------ccC
Q psy8875         573 ---LANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNA-------------KIERA---------------GMD  621 (734)
Q Consensus       573 ---~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~-------------~I~~~---------------~ld  621 (734)
                         +.+........-+ .....|.+++++|..+++|++..+...             .|...               .+.
T Consensus       157 ~~~~iD~~t~~v~~qI-~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~  235 (441)
T d1qnia2         157 MFTAIDAETMDVAWQV-IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG  235 (441)
T ss_dssp             EEEEEETTTCSEEEEE-EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred             eEEeecCccceeeEEE-ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC
Confidence               2333322211111 112479999999999999999754211             11111               011


Q ss_pred             CCceEEEEE----------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCC-------C--ceEEEEcCCCCCCCCe
Q psy8875         622 GSHRNMVIV----------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNG-------G--NRRLVLYSPQTLSHPF  682 (734)
Q Consensus       622 G~~~~~lv~----------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG-------~--~~~~i~~~~~~~~~P~  682 (734)
                      +....++..          ..-..|+|+++++.+++||.+....+.|..++++-       .  .+..++........|.
T Consensus       236 ~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgpl  315 (441)
T d1qnia2         236 DSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPL  315 (441)
T ss_dssp             TCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEE
T ss_pred             CCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcc
Confidence            111111111          11356999999999999999999889999999642       1  1233333222233455


Q ss_pred             EEEEE-CCEEEEEeCCCCceEEEe
Q psy8875         683 SISTF-EDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       683 gl~v~-~~~lywtd~~~~~v~~~~  705 (734)
                      .-++. .+++|-+-.-...|.+.+
T Consensus       316 h~~fd~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         316 HTTFDGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             EEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceecCCceEEEcccccceEEEec
Confidence            55664 478888877777777766

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.23  E-value=0.00011  Score=77.73  Aligned_cols=198  Identities=6%  Similarity=-0.058  Sum_probs=133.1

Q ss_pred             CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCce
Q psy8875         515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPR  593 (734)
Q Consensus       515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~  593 (734)
                      +.++++....++|..+++..+.....+ ..+ ..|.++++.+.++.||.+.. .+.|.+.+++......+. ......|+
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~-~~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~~  108 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVL-DTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEAR  108 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEE-ECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCCC
Confidence            344567777788888888754443333 333 46999999999999998865 578999998654432222 23456789


Q ss_pred             eEEEeCC----CCeEEEEecCCCceEEEeccCCCceEEEEEc-----------CCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         594 SLALNPI----DGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-----------DIKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       594 ~iavD~~----~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-----------~l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      ++++.+.    ..+||.+... ...|...+.+.......+..           .-..+.+|++++.+.++||+-...+.|
T Consensus       109 ~~~~s~~~SpDG~~l~vs~~~-~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         109 SIETSKMEGWEDKYAIAGAYW-PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE-TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CeEEecccCCCCCEEEEEcCC-CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            9988763    4578888754 46777777655443333221           112345678888888999999889999


Q ss_pred             EEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         659 SSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ..+++.......+... .....|.++++  .+.+||.+....+.|..++..+++.+..+..
T Consensus       188 ~~~d~~~~~~~~~~~i-~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             EEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             EEEEccCCCcceEEEE-cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            9999765443222221 12346788888  4567999998888888888877776666643

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.2e-07  Score=62.43  Aligned_cols=38  Identities=32%  Similarity=0.810  Sum_probs=32.3

Q ss_pred             ccCcCC-CCCcccceeccCCceEEecCCCeeeCCCCCcccc
Q psy8875         430 IDECET-PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCK  469 (734)
Q Consensus       430 ~~eC~~-~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~  469 (734)
                      +|||+. ++.|+|+|+|++++|+|.|++||.+. ++++ |+
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~-d~~t-C~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRR-CE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEE-TTTE-EC
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEEC-CCCc-CC
Confidence            578964 58899999999999999999999995 5555 64

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.23  E-value=0.00018  Score=70.27  Aligned_cols=229  Identities=15%  Similarity=0.088  Sum_probs=131.3

Q ss_pred             eeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-----CcEEEEecCCCCceEEEEeC-----C
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-----KKIYKAPIDEGSERTVVIEE-----D  545 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-----~~I~~~~l~~g~~~~~~~~~-----~  545 (734)
                      .++|+....|+.+++++.+.+.|........+.+|.|..++|.|+....     ..|+.+.++++....+....     .
T Consensus        14 ~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~   93 (281)
T d1k32a2          14 RIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGR   93 (281)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETT
T ss_pred             EEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCc
Confidence            4677788889999999999988877777778889999899898875432     25888888855433221110     1


Q ss_pred             CCCccceeeeccCCcEEEEeCCC-----CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCC--------
Q psy8875         546 KTIADGLAVDWIYSHIYWTDAHK-----NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQN--------  612 (734)
Q Consensus       546 ~~~p~glAvD~~~~~lY~td~~~-----~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~--------  612 (734)
                      ......++..+.++.||++....     ..+...++++...+.+.   ......+...+....+|.......        
T Consensus        94 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (281)
T d1k32a2          94 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNTFELPHWKGYRGG  170 (281)
T ss_dssp             EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESCSCCTTSTTCCST
T ss_pred             cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeeccccceeeeeccC
Confidence            11234556666778888876542     34566666666543322   112223333332223333322110        


Q ss_pred             -ceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECC
Q psy8875         613 -AKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFED  689 (734)
Q Consensus       613 -~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~  689 (734)
                       ...............+. .........++  ..+.+++...  ....|+.++++|+..+.|...  ....+..++.++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~--~~~~~~~~SpDG~  245 (281)
T d1k32a2         171 TRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSF--TDYYPRHLNTDGR  245 (281)
T ss_dssp             TCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETTEEEEEECTTSSCEEEEEETTSCSCEECCCC--CSSCEEEEEESSS
T ss_pred             Ccceeeeeccccceeecc-CCccccceeee--eccccceecccccccceEEEeCCCCceEEeecC--CCcccccCcCCCC
Confidence             11112222222222121 11222222333  3556666643  455899999999988876542  1223446777889


Q ss_pred             EEEEEeCCCCceEEEeccCCCceEE
Q psy8875         690 WLYWSDWQQKAIYKANKFTGDNLTA  714 (734)
Q Consensus       690 ~lywtd~~~~~v~~~~~~~G~~~~~  714 (734)
                      +|+|+..  +.|+.++..+|+..++
T Consensus       246 ~I~f~~~--~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         246 RILFSKG--GSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CEEEEET--TEEEEECTTTCCEEEC
T ss_pred             EEEEEeC--CEEEEEECCCCCEEEe
Confidence            9999764  5799998766654443

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.4e-07  Score=64.42  Aligned_cols=39  Identities=41%  Similarity=1.015  Sum_probs=32.6

Q ss_pred             cccCcCC-CCCccc-ceeccCCceEEecCCCeeeCCCCCccc
Q psy8875         429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDPHHPTQC  468 (734)
Q Consensus       429 ~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~~~~t~C  468 (734)
                      |||||+. ++.|.+ +|+|++|+|.|.|++||.+..++++ |
T Consensus         1 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~~~-C   41 (42)
T d1lmja2           1 DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISA-C   41 (42)
T ss_dssp             ECCHHHHCSSTTTTSEEEEETTEEEEESCTTSCCCSSSCC-C
T ss_pred             CccccCCCCCCCCCCEeECCCCCeEEeCCCCCeECcCCCc-c
Confidence            6899964 467766 9999999999999999999877554 5

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.18  E-value=2.5e-05  Score=83.50  Aligned_cols=158  Identities=14%  Similarity=0.160  Sum_probs=103.9

Q ss_pred             CceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC-C-C------CCceeEEEeC---CCCeE
Q psy8875         536 SERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS-Y-L------DEPRSLALNP---IDGWM  604 (734)
Q Consensus       536 ~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~-~-l------~~P~~iavD~---~~g~L  604 (734)
                      ...++++ .++..|.+||+.+ .++||+++...++|.+++.++...+.+..- . .      ..-.+||+||   .+++|
T Consensus        17 f~~~~ia-~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i   94 (450)
T d1crua_          17 FDKKVIL-SNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (450)
T ss_dssp             SCEEEEE-CCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             cEEEEEE-CCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence            3344554 5899999999985 578999998789999998876665554421 1 1      2234799998   47889


Q ss_pred             EEEecC-----------CCceEEEeccCCCc-----eEEEEE----cCCCCceeEEEecCCCeEEEEeCC----------
Q psy8875         605 YWSDWG-----------QNAKIERAGMDGSH-----RNMVIV----SDIKWPNGLTLDLVQRRLYWVDAK----------  654 (734)
Q Consensus       605 Ywtd~~-----------~~~~I~~~~ldG~~-----~~~lv~----~~l~~P~glavD~~~~~LYw~D~~----------  654 (734)
                      |++...           ....|.+...++..     +++++.    ..-+.-..|++++ .++||++-..          
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~  173 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF  173 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccc
Confidence            987420           01235555554433     222222    1224556899985 6789998432          


Q ss_pred             ----------------------CCeEEEEecCCCce----------EEEEcCCCCCCCCeEEEEE-CCEEEEEeCCC
Q psy8875         655 ----------------------LNEISSCDYNGGNR----------RLVLYSPQTLSHPFSISTF-EDWLYWSDWQQ  698 (734)
Q Consensus       655 ----------------------~~~I~~~~~dG~~~----------~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~  698 (734)
                                            .++|.|++.+|+..          ..|.+  ..+.+|++|++. .+.||++|-+.
T Consensus       174 ~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a--~G~RNp~g~~~~p~g~l~~~e~G~  248 (450)
T d1crua_         174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYT--LGHRNPQGLAFTPNGKLLQSEQGP  248 (450)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEE--BCCSEEEEEEECTTSCEEEEEECS
T ss_pred             cccccccCcccccccccccccccCceEEeeccccccccccccccccceEEE--eccccccceeecccceeeeccccc
Confidence                                  37899999998742          12333  237889999996 78999998653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.16  E-value=9.3e-05  Score=76.20  Aligned_cols=237  Identities=6%  Similarity=-0.126  Sum_probs=136.4

Q ss_pred             cceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC---------CCcEEEEecCCCCceEEEE-eC-----CCC
Q psy8875         483 HDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS---------EKKIYKAPIDEGSERTVVI-EE-----DKT  547 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~---------~~~I~~~~l~~g~~~~~~~-~~-----~~~  547 (734)
                      ..|+.++.+.......+.....+ ++++.+....||+++..         .+.|..+++..+.....+. ..     ...
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            34666666666554444433333 57888888899998742         2347888877544333221 11     134


Q ss_pred             CccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCC-------CCCceeEEEeCCC-------------------
Q psy8875         548 IADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSY-------LDEPRSLALNPID-------------------  601 (734)
Q Consensus       548 ~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~-------l~~P~~iavD~~~-------------------  601 (734)
                      .|.++++.+.+++||+++...+.|.+.++........+...       ...+..+++.+..                   
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~  204 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA  204 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence            58899999999999999987788888876554332222110       0011112222211                   


Q ss_pred             ------------------CeEEEEecCCCceEEEeccCCCceEEEEEcCC------------CCceeEEEecCCCeEEEE
Q psy8875         602 ------------------GWMYWSDWGQNAKIERAGMDGSHRNMVIVSDI------------KWPNGLTLDLVQRRLYWV  651 (734)
Q Consensus       602 ------------------g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l------------~~P~glavD~~~~~LYw~  651 (734)
                                        +.++|+.   ..+|+.+++++....++.....            ..+..+++.+..+++|++
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~  281 (368)
T d1mdah_         205 QCTGAQNCSSQAAQANYPGMLVWAV---ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEECB---SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ccccccccceeecccccCcEEEEec---CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEE
Confidence                              2222222   1234444444333322211110            124568999899999998


Q ss_pred             eCCC--------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEeccCCCceEEEecccc
Q psy8875         652 DAKL--------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKANKFTGDNLTAITGVHQ  720 (734)
Q Consensus       652 D~~~--------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~~~~G~~~~~l~~~~~  720 (734)
                      ....        .+|+.++.....+...+.   ....|.+|++.  ++ .||.+....+.|+.++..+|+.+..|..   
T Consensus       282 ~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~---  355 (368)
T d1mdah_         282 TVEHSRSCLAAAENTSSVTASVGQTSGPIS---NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL---  355 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC---
T ss_pred             ecCCCceeecCCceEEEEECCCCcEeEEec---CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC---
Confidence            4322        357787766544322221   12457788883  33 4899999999999999999988777653   


Q ss_pred             cCCCccCCC
Q psy8875         721 THEPLNSPG  729 (734)
Q Consensus       721 l~~P~~i~~  729 (734)
                      -..|.+|+.
T Consensus       356 g~~P~~l~~  364 (368)
T d1mdah_         356 DKGPESLSV  364 (368)
T ss_dssp             CSCCCEEEC
T ss_pred             CCCCCEEEE
Confidence            235766653

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.2e-07  Score=65.75  Aligned_cols=40  Identities=35%  Similarity=0.823  Sum_probs=35.2

Q ss_pred             cccCCCCCcCccccCCC-cceeecCCCcEecCCCCcccccc
Q psy8875         392 CAKDNGGCLHKCVDLPV-GYMCECNEGYKLSSNRHTCIDID  431 (734)
Q Consensus       392 C~~~~~~C~~~C~~~~~-~~~C~C~~G~~l~~~~~~C~~~~  431 (734)
                      |..++++|+|.|+++++ +|+|.|+.||.|.+|+++|....
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~   42 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTV   42 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECS
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCCC
Confidence            56678999999999987 58899999999999999998654

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.1e-07  Score=60.86  Aligned_cols=34  Identities=44%  Similarity=1.039  Sum_probs=29.6

Q ss_pred             cccCcCC-CCCccc-ceeccCCceEEecCCCeeeCC
Q psy8875         429 DIDECET-PGSCSQ-ICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       429 ~~~eC~~-~~~C~~-~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      |||||+. +..|.+ +|+|++|+|+|.|++||.++.
T Consensus         2 DidEC~~~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~~   37 (44)
T d1lmja1           2 DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF   37 (44)
T ss_dssp             CCCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECT
T ss_pred             cccccCCCCCCCCCCEeEcCCCCeEEeCCCCCccCC
Confidence            7999975 466766 899999999999999999974

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=0.00021  Score=75.23  Aligned_cols=198  Identities=5%  Similarity=-0.082  Sum_probs=130.3

Q ss_pred             CeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCce
Q psy8875         515 GMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPR  593 (734)
Q Consensus       515 ~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~  593 (734)
                      +.++++...+++|...++..+.....+ ..+ ..|.+|++.+.+++||.+.. .+.|.+.+++......+. ......|.
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l-~~g-~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~~~  108 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVI-DTG-YAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIEAR  108 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEE-ECC-SSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEECCSEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEE-eCC-CCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeCCCCCc
Confidence            344566777889999998865444333 333 57999999999999998875 478999998765433322 23445688


Q ss_pred             eEEEeC----CCCeEEEEecCCCceEEEeccCCCceEEEEEcC-----------CCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         594 SLALNP----IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-----------IKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       594 ~iavD~----~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-----------l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      ++++.+    ...+||.+... ...|...+........++...           -..+..++.......++|+....+.|
T Consensus       109 ~~~~s~~~spDG~~l~v~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i  187 (426)
T d1hzua2         109 SVESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKV  187 (426)
T ss_dssp             EEEECCSTTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceEEeeeecCCCCEEEEeecC-CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeE
Confidence            888875    35578888743 355655555544333332211           12234567777788888888888888


Q ss_pred             EEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         659 SSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      ..+.........+... .....|.++++  .+.++|++....+.+..++..+++.+..+..
T Consensus       188 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  247 (426)
T d1hzua2         188 LLVNYKDIDNLTVTSI-GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV  247 (426)
T ss_dssp             EEEECSSSSSCEEEEE-ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeccccceeeEEe-ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEecc
Confidence            8877554332211111 23467888888  5678999998888888888887777666643

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.07  E-value=0.00056  Score=68.92  Aligned_cols=237  Identities=11%  Similarity=0.045  Sum_probs=132.5

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeC---------CCcEEEEecCCCCceEEEEeC------CCCC
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDIS---------EKKIYKAPIDEGSERTVVIEE------DKTI  548 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~---------~~~I~~~~l~~g~~~~~~~~~------~~~~  548 (734)
                      .|+.+++........+.....+ +++|.+..+.||+++..         .+.|..+++..+.....+...      ....
T Consensus        29 ~v~v~D~~tg~~~~~~~~g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~  107 (355)
T d2bbkh_          29 QQFVIDGEAGRVIGMIDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY  107 (355)
T ss_dssp             EEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCC
T ss_pred             eEEEEECCCCcEEEEEECCCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCC
Confidence            4777777665544444433333 68999989999998642         356777887755443333211      1345


Q ss_pred             ccceeeeccCCcEEEEeCCC-CeEEEEeCCCCce-EEEEcC------CCCCceeEEEeC---------------------
Q psy8875         549 ADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMR-KVLVRS------YLDEPRSLALNP---------------------  599 (734)
Q Consensus       549 p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~-~~l~~~------~l~~P~~iavD~---------------------  599 (734)
                      |.++++.+.++.+|+++... ..+.+.++..... ..+-..      ....+..+++.+                     
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~  187 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  187 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecc
Confidence            78999999999999987653 3444444432221 111100      001122233333                     


Q ss_pred             -----------------CCCeEEEEecCCCceEEEeccCCCceEEEEEcC------------CCCceeEEEecCCCeEEE
Q psy8875         600 -----------------IDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD------------IKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       600 -----------------~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~------------l~~P~glavD~~~~~LYw  650 (734)
                                       ..+.+.|+..  ..+|+.+++++.....+....            ...+..+++.+...++||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         188 VFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cccceecceeeeccccCCCCeEEEecC--CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence                             3333444331  245555555544332221100            012345888888889998


Q ss_pred             EeCC---------CCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CC-EEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875         651 VDAK---------LNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--ED-WLYWSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       651 ~D~~---------~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~-~lywtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      +...         .+.|..+++....+...+.   .-..|.+|++.  +. .||.+....+.|+.++..+|+.+..|...
T Consensus       266 ~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         266 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EeccCCceeecCCCCeEEEEeCCCCcEEEEec---CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence            8432         2367777766443322221   12457788884  33 37788888899999999999988887643


Q ss_pred             cccCCCccCC
Q psy8875         719 HQTHEPLNSP  728 (734)
Q Consensus       719 ~~l~~P~~i~  728 (734)
                        -..|..|.
T Consensus       343 --G~~p~~i~  350 (355)
T d2bbkh_         343 --GHGPQVIT  350 (355)
T ss_dssp             --CSSCCEEE
T ss_pred             --CCCccEEE
Confidence              23455543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=0.0017  Score=64.88  Aligned_cols=239  Identities=9%  Similarity=-0.053  Sum_probs=140.8

Q ss_pred             eeeeeeccceEEeecCCCceEEEec-CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCcccee
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVN-STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLA  553 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~-~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glA  553 (734)
                      .++++.+..|...+++......+.. ....+.+++|.+.... ..+-...+.|+..++..+... ...+......+..|+
T Consensus        31 ~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~-latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  109 (311)
T d1nr0a1          31 KIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDIS  109 (311)
T ss_dssp             EEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEE
T ss_pred             EEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCe-EeccccCceEeeeeeeccccccccccccccCcccccc
Confidence            4566677777777776555544443 3567899999986544 455556788888887754432 223332334567788


Q ss_pred             eeccCCcEEEEeCC-CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC
Q psy8875         554 VDWIYSHIYWTDAH-KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD  632 (734)
Q Consensus       554 vD~~~~~lY~td~~-~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~  632 (734)
                      +.+.+..|..+-.. ...+.+.+++.......+.........|+++|...+++++-. ..+.|...++........+...
T Consensus       110 ~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs-~d~~i~i~d~~~~~~~~~~~~~  188 (311)
T d1nr0a1         110 WDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS-DDNTVAIFEGPPFKFKSTFGEH  188 (311)
T ss_dssp             ECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE-TTSCEEEEETTTBEEEEEECCC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc-cccccccccccccccccccccc
Confidence            88666666655433 344666777644332223334456789999988777777653 2466777777654444344333


Q ss_pred             CCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC--CC---CCCeEEEEE-CCEEEEEeCCCCceEEEec
Q psy8875         633 IKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ--TL---SHPFSISTF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       633 l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~--~~---~~P~gl~v~-~~~lywtd~~~~~v~~~~~  706 (734)
                      ....+.|++++....|+.+. ..+.|...++........+....  ..   ..-.+|++. .+.++.+-...+.|+..+.
T Consensus       189 ~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         189 TKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             cccccccccCcccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            44557899987666665554 45677777765544433332211  11   123466663 2333344334466777787


Q ss_pred             cCCCceEEEec
Q psy8875         707 FTGDNLTAITG  717 (734)
Q Consensus       707 ~~G~~~~~l~~  717 (734)
                      .+++.++.+..
T Consensus       268 ~t~~~~~~l~~  278 (311)
T d1nr0a1         268 ATLKVEKTIPV  278 (311)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            78877766643

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.02  E-value=0.00066  Score=67.64  Aligned_cols=92  Identities=7%  Similarity=0.005  Sum_probs=64.8

Q ss_pred             ceeeeee-ccceEEeecCCCceEEE--ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCC-----C
Q psy8875         475 ASLLFAR-KHDIRKISLDHHEMTAI--VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEED-----K  546 (734)
Q Consensus       475 ~~l~~~~-~~~I~~i~l~~~~~~~l--~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~-----~  546 (734)
                      .+|+..+ ...|..+++........  ++....|.+|++.+...+||++....+.|+..++..+.....+....     .
T Consensus         9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~   88 (346)
T d1jmxb_           9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVG   88 (346)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccC
Confidence            3455444 46788888887655432  23456788999999889999999888999999988554332222111     1


Q ss_pred             CCccceeeeccCCcEEEEeC
Q psy8875         547 TIADGLAVDWIYSHIYWTDA  566 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~  566 (734)
                      ..|.++++.+.++.||++..
T Consensus        89 ~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          89 RSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             ECSSCEEECTTSSEEEEEEE
T ss_pred             CceEEEEEecCCCEEEEEec
Confidence            35889999998999998864

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.01  E-value=0.0024  Score=64.63  Aligned_cols=212  Identities=8%  Similarity=-0.078  Sum_probs=121.0

Q ss_pred             ceEEEeeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         504 SATAIDFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      .+.++++.+..+.+|+..... +.+.......+   +++  .....|.++++.+.+..+|++....+.+.+.+.......
T Consensus       126 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         126 YSWMNANTPNNADLLFFQFAAGPAVGLVVQGGS---SDD--QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             CCCcEEEEeCCCcEEEEEEcCCCceEEeeccCC---eEE--EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence            345566766677777665443 33333333321   111  123467889999888899999999899998887665443


Q ss_pred             EEEc------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEE------------cCCCCceeEEEecC
Q psy8875         583 VLVR------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIV------------SDIKWPNGLTLDLV  644 (734)
Q Consensus       583 ~l~~------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~------------~~l~~P~glavD~~  644 (734)
                      ....      .....+..++.++....++.+.   ..+|...+..+.....+..            .....+..+++.+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  277 (373)
T d2madh_         201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKS  277 (373)
T ss_pred             EEEeeeccccCccceeeeEEECCCceEEEecC---CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecC
Confidence            3221      1122334455554333333332   2455555544432221111            11122345677767


Q ss_pred             CCeEEEEeC---------CCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE--CCE-EEEEeCCCCceEEEeccCCCce
Q psy8875         645 QRRLYWVDA---------KLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDW-LYWSDWQQKAIYKANKFTGDNL  712 (734)
Q Consensus       645 ~~~LYw~D~---------~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~-lywtd~~~~~v~~~~~~~G~~~  712 (734)
                      ..++|++..         ..+.|..++.....+...+.   .-..|.+|++.  +.+ ||.+....+.|+.++..+|+.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~  354 (373)
T d2madh_         278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQD  354 (373)
T ss_pred             CCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence            777887643         33456666654443332222   23567888883  344 6778888899999999999998


Q ss_pred             EEEecccccCCCccCC
Q psy8875         713 TAITGVHQTHEPLNSP  728 (734)
Q Consensus       713 ~~l~~~~~l~~P~~i~  728 (734)
                      ..|....  ..|..++
T Consensus       355 ~~~~~~g--~~P~~l~  368 (373)
T d2madh_         355 QSTVELG--SGPQVLS  368 (373)
T ss_pred             EEECCCC--CCCcEEE
Confidence            8886442  3465554

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.7e-06  Score=59.38  Aligned_cols=37  Identities=32%  Similarity=0.732  Sum_probs=33.3

Q ss_pred             CCCcccceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|++++++|+|.|++||.+..++++ |++...
T Consensus         6 NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~t-C~~~~~   42 (50)
T d1autl2           6 NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQ-CHPAVK   42 (50)
T ss_dssp             GGGCSSEEEECSSSEEEECCTTEEECTTSSC-EEECSS
T ss_pred             CCCcccEeecCCCCeEEECCCCCEECCCCCc-cccCCC
Confidence            5789999999999999999999999999888 987544

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.9e-06  Score=59.00  Aligned_cols=37  Identities=27%  Similarity=0.701  Sum_probs=33.2

Q ss_pred             CCCcccceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|+|++++|.|.|++||.+..++++ |.+...
T Consensus         7 NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~t-C~~~~~   43 (51)
T d2p3ua1           7 NGDCDQFCHEEQNSVVCSCARGYTLADNGKA-CIPTGP   43 (51)
T ss_dssp             GGGCSSEEEEETTEEEEECCTTEEECTTSSC-EEESSS
T ss_pred             CCCcccEeecCCCCeEeEcCCCCEECCCCCc-cccCCc
Confidence            4789999999999999999999999999887 987553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.77  E-value=0.0025  Score=64.62  Aligned_cols=158  Identities=8%  Similarity=-0.023  Sum_probs=99.9

Q ss_pred             eEEEeeeccCCeEEEEEeCC----CcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC---------CCeE
Q psy8875         505 ATAIDFVFRTGMIFWSDISE----KKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH---------KNTI  571 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~----~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~---------~~~I  571 (734)
                      +..+++.+...++|+++...    ..|+.++...+..... +.  ...+.++++.+.++.||++...         .+.|
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-~~--~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v   99 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-VN--GGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV   99 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-Ee--CCCCccEEEcCCCCEEEEEeecCCcccccccceEE
Confidence            34556667778888875432    4577777664443333 22  2334489999999999998754         3567


Q ss_pred             EEEeCCCCceEEEEc-C------CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875         572 ELANFEGTMRKVLVR-S------YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV  644 (734)
Q Consensus       572 ~~~~ldG~~~~~l~~-~------~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~  644 (734)
                      .+.++........+. .      ....|.++++.+....+|+..+.....+...++....  ++  .....|.++++.+.
T Consensus       100 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~s~~  175 (373)
T d2madh_         100 EVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS--DD--QLLSSPTCYHIHPG  175 (373)
T ss_pred             EEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe--EE--EEeccceeEEEecC
Confidence            777776544322221 1      1346788888888887777765443444444443322  11  23445788999888


Q ss_pred             CCeEEEEeCCCCeEEEEecCCCceE
Q psy8875         645 QRRLYWVDAKLNEISSCDYNGGNRR  669 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG~~~~  669 (734)
                      +.++|++....+.+..++..+....
T Consensus       176 g~~~~v~~~~dg~~~~~~~~~~~~~  200 (373)
T d2madh_         176 APSTFYLLCAQGGLAKTDHAGGAAG  200 (373)
T ss_pred             CCcEEEEEcCCCeEEEEEcCCceee
Confidence            8899999988889988887665433

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=6.4e-06  Score=58.49  Aligned_cols=38  Identities=29%  Similarity=0.817  Sum_probs=33.8

Q ss_pred             CCCCcccceeccCCceEEecCCCeeeCCCCCcccccccc
Q psy8875         435 TPGSCSQICLNEKGGFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       435 ~~~~C~~~C~n~~g~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      +++.|+|+|+|++++|+|.|++||.+..+.++ |++++.
T Consensus         4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~t-C~~~~~   41 (51)
T d1kigl_           4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKS-CVSTER   41 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSC-EEECSS
T ss_pred             CCCCcccEeEcCCCcEEeEcCCCCEECCCCCc-cccCCc
Confidence            35789999999999999999999999999887 987654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.71  E-value=0.00098  Score=69.78  Aligned_cols=148  Identities=5%  Similarity=-0.041  Sum_probs=94.0

Q ss_pred             eccCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCCc-----------------eEE
Q psy8875         555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQNA-----------------KIE  616 (734)
Q Consensus       555 D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~-----------------~I~  616 (734)
                      .+.++.||+++..+.+|.+++++......++ ......|.++++.|...++|++..++..                 .+.
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            3457889999999999999999876554444 3557899999999888888988644211                 112


Q ss_pred             EeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEE--------------E----------------------
Q psy8875         617 RAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEIS--------------S----------------------  660 (734)
Q Consensus       617 ~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~--------------~----------------------  660 (734)
                      .++........-+.. -..|.++++++.++++|++......+.              .                      
T Consensus       160 ~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~  238 (441)
T d1qnia2         160 AIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSK  238 (441)
T ss_dssp             EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             eecCccceeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCC
Confidence            222222111111111 135899999999999999975433221              1                      


Q ss_pred             ---Ee-cCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEec
Q psy8875         661 ---CD-YNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       661 ---~~-~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~  706 (734)
                         ++ .........+   .....|.|+++  ++.+||++....+.|..++.
T Consensus       239 v~vvd~~~~~~v~~~I---PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         239 VPVVDGRGESEFTRYI---PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             CCEEECSSSCSSEEEE---CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             cEEEEcccCCceEEEE---eCCCCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence               11 1111111111   12356889988  67889999988888887773

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.5e-05  Score=56.08  Aligned_cols=39  Identities=23%  Similarity=0.651  Sum_probs=31.7

Q ss_pred             cCcCC-CCCccccee------ccCCceEEecCCCeeeCCCCCccccc
Q psy8875         431 DECET-PGSCSQICL------NEKGGFKCECVAGYIKDPHHPTQCKA  470 (734)
Q Consensus       431 ~eC~~-~~~C~~~C~------n~~g~~~C~C~~gy~~~~~~~t~C~~  470 (734)
                      +||.. ++.|+|+|+      ++.++|.|.|+.||.+..+.++ |.+
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~t-Cia   50 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS-CLT   50 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSC-EEC
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCc-ccC
Confidence            46653 588999996      5568999999999999998877 753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.65  E-value=0.00048  Score=68.72  Aligned_cols=101  Identities=9%  Similarity=-0.068  Sum_probs=68.9

Q ss_pred             EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC
Q psy8875         508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS  587 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~  587 (734)
                      +++.+ .+..+++....+.|..+++..+.....+.-.....|.+|++.+.++.||++....+.|.+.++........+..
T Consensus         2 ~a~~~-~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCC-CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            44554 33444444456778888887553333222223457999999998999999999889999999876544332221


Q ss_pred             C------CCCceeEEEeCCCCeEEEEec
Q psy8875         588 Y------LDEPRSLALNPIDGWMYWSDW  609 (734)
Q Consensus       588 ~------l~~P~~iavD~~~g~LYwtd~  609 (734)
                      .      ...|.++++.|...+||++..
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEec
Confidence            1      236889999998889998863

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.2e-05  Score=54.57  Aligned_cols=37  Identities=35%  Similarity=0.870  Sum_probs=29.2

Q ss_pred             cccccccCCCCCcC--ccccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCLH--KCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~--~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      |||||...+..|.+  +|+|++++|+|.|++||.    |++|+
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~----G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----STTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCc----CCCCc
Confidence            57888765556754  899999999999999994    56664

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.60  E-value=0.0066  Score=61.31  Aligned_cols=120  Identities=14%  Similarity=0.134  Sum_probs=79.3

Q ss_pred             CCCCceeEEE--eCCCCeEEEEecCCCceEEEe--ccCCCc--eEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEE
Q psy8875         588 YLDEPRSLAL--NPIDGWMYWSDWGQNAKIERA--GMDGSH--RNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEIS  659 (734)
Q Consensus       588 ~l~~P~~iav--D~~~g~LYwtd~~~~~~I~~~--~ldG~~--~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~  659 (734)
                      .+..|.||++  ++..|.+|..-..+.+.++..  ..++..  ...++.  ..-..+.|+++|..+++||+++-. ..|+
T Consensus       126 ~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~LyisEE~-~Giw  204 (353)
T d1h6la_         126 AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYIAEED-EAIW  204 (353)
T ss_dssp             SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEEEETT-TEEE
T ss_pred             ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEEecCc-cceE
Confidence            3557889999  888886655443445665544  334432  222222  233568899999999999999875 5789


Q ss_pred             EEecC---CCceEEEEcC--CCCCCCCeEEEEE-----CCEEEEEeCCCCceEEEeccC
Q psy8875         660 SCDYN---GGNRRLVLYS--PQTLSHPFSISTF-----EDWLYWSDWQQKAIYKANKFT  708 (734)
Q Consensus       660 ~~~~d---G~~~~~i~~~--~~~~~~P~gl~v~-----~~~lywtd~~~~~v~~~~~~~  708 (734)
                      +++++   +.....+...  ......|-||+++     +++|.+++-+.++....++.+
T Consensus       205 ~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         205 KFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            88865   3344444332  2345679999985     468999998888877776544

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.59  E-value=0.0014  Score=65.91  Aligned_cols=194  Identities=6%  Similarity=-0.063  Sum_probs=108.1

Q ss_pred             eccCCeEEEEEeC----CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC---------CCeEEEEeCC
Q psy8875         511 VFRTGMIFWSDIS----EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH---------KNTIELANFE  577 (734)
Q Consensus       511 d~~~~~lyw~d~~----~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~---------~~~I~~~~ld  577 (734)
                      .+...++|+++..    ...|+.+++..+.....+ ..+  ...++|+.+.++.||+++..         .+.|.+.++.
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~   86 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-DGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV   86 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-EEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-ECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence            3456778877653    235777777755433333 212  33379999999999998742         3568888886


Q ss_pred             CCceEE-EEc------CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcC-------CCCceeEEEec
Q psy8875         578 GTMRKV-LVR------SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSD-------IKWPNGLTLDL  643 (734)
Q Consensus       578 G~~~~~-l~~------~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~-------l~~P~glavD~  643 (734)
                      ...... +..      .....|.++++.+..+++|++.......+...++........+...       ...+..+++..
T Consensus        87 t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (355)
T d2bbkh_          87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR  166 (355)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred             CCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC
Confidence            544332 221      1235789999999999999988665455655555443322222211       12234567766


Q ss_pred             CCCeEEEEeCCCCeEEEEecCCCc--eEEEEcCCCCCCCCeEEEE--ECCEEEEEeCCCCceEEEecc
Q psy8875         644 VQRRLYWVDAKLNEISSCDYNGGN--RRLVLYSPQTLSHPFSIST--FEDWLYWSDWQQKAIYKANKF  707 (734)
Q Consensus       644 ~~~~LYw~D~~~~~I~~~~~dG~~--~~~i~~~~~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~~~  707 (734)
                      ....+||.......+...+.....  ....+........+..+.+  .++++|+.+...+.+..++..
T Consensus       167 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         167 DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCE
T ss_pred             CCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEecc
Confidence            677777776666655554432211  0000000001112222333  466777777766666555443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.59  E-value=0.0033  Score=62.59  Aligned_cols=206  Identities=9%  Similarity=0.013  Sum_probs=120.9

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce--
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR--  581 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~--  581 (734)
                      .+..|++++.+++|++..  .+.|+..+++.+....++ ..-...+..|++.+. +++..+-...+.|.+.++.....  
T Consensus        19 ~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~-~~H~~~v~~~~~sp~-g~~latg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIY-TEHSHQTTVAKTSPS-GYYCASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEE-CCCSSCEEEEEECTT-SSEEEEEETTSEEEEEESSSTTCCE
T ss_pred             CeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEE-cCCCCCEEEEEEeCC-CCeEeccccCceEeeeeeecccccc
Confidence            456678888888888764  456777778755555444 333456788889865 45555555578999998866432  


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      ...+.........|++.|...+|...-.+....+...+++-......+.........|++.+.+..++++-...+.|...
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~  174 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF  174 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccc
Confidence            23333344567899999876666655433233344444443222111222234457888887777777776666788887


Q ss_pred             ecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         662 DYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       662 ~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++...........  ......+|++. .+.++.+-...+.|...+..++..+..+
T Consensus       175 d~~~~~~~~~~~~--~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         175 EGPPFKFKSTFGE--HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             ETTTBEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             ccccccccccccc--ccccccccccCccccccccccccccccccccccccccccc
Confidence            8776554444432  12223566663 2333333333456666666565554443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.0058  Score=58.69  Aligned_cols=224  Identities=7%  Similarity=0.020  Sum_probs=127.9

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCC--cEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEK--KIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~--~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .|+.++.+|.+...|..........+|.|..++|.++....+  .++...+.++. .+.+.. ...........+.+..|
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVAS-FPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-EEEEEC-CSSCEEEEEECTTSSEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc-eeEEee-eecccccceecCCCCee
Confidence            588888999999888877777778899999999987755433  57777777443 333332 34455566677667666


Q ss_pred             EEEeCCCC--eEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEec-CCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAHKN--TIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDW-GQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~~~--~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~-~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      ++.-...+  .+............+. ............+....++++.. .....|++.++++.....+... ......
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~-~~~~~~  175 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQD  175 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEE
T ss_pred             eEeeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccceeeecc-cccccc
Confidence            66544332  2322222222222221 22223333344455556666653 2346888988888766544332 222344


Q ss_pred             EEEecCCCeEEEEeCC--CCeEEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEeC--CCCceEEEeccCCCce
Q psy8875         639 LTLDLVQRRLYWVDAK--LNEISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSDW--QQKAIYKANKFTGDNL  712 (734)
Q Consensus       639 lavD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd~--~~~~v~~~~~~~G~~~  712 (734)
                      .++.+....|++....  ...|..++..+...+.+.. ..   .-....+  ++.+|+++..  +...|+.++. +|+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~---~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~-dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TF---LDETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SS---SCEEEEECTTSSEEEEEEEETTEEEEEEEET-TSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeec-Cc---cccceEECCCCCEEEEEEcCCCCcEEEEEEC-CCCCE
Confidence            5676777777777543  3467777777666554432 11   1123334  5677766543  2345777765 45554


Q ss_pred             EEEe
Q psy8875         713 TAIT  716 (734)
Q Consensus       713 ~~l~  716 (734)
                      +.|.
T Consensus       251 ~~lt  254 (269)
T d2hqsa1         251 ARLP  254 (269)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            4443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.46  E-value=0.0032  Score=62.09  Aligned_cols=129  Identities=12%  Similarity=-0.022  Sum_probs=83.4

Q ss_pred             CCCcEEEEecCCCCceEEE-EeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce-EEEEcC----CCCCceeEE
Q psy8875         523 SEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR-KVLVRS----YLDEPRSLA  596 (734)
Q Consensus       523 ~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~-~~l~~~----~l~~P~~ia  596 (734)
                      ..++|+.+++..+.....+ +......|.+|++.+.++.||++....+.|.+.++..... ..+...    ....|.+++
T Consensus         9 ~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_           9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            3455666655533222222 1223356899999998889999998889999999865443 333211    134678999


Q ss_pred             EeCCCCeEEEEecC----------CCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         597 LNPIDGWMYWSDWG----------QNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       597 vD~~~g~LYwtd~~----------~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      +.|...+||++...          ....+...++........+. ....|.++++++.+.+||++.
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEES
T ss_pred             EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEc
Confidence            99999999998742          12344455444333322222 345689999999999999875

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.44  E-value=0.0016  Score=66.35  Aligned_cols=94  Identities=9%  Similarity=-0.080  Sum_probs=62.4

Q ss_pred             CceeEEEeCCCCeEEEEecCC-------CceEEEeccCCCceEEEEEcCCCCceeEEEecCCC-eEEEEeCCCCeEEEEe
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQ-------NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQR-RLYWVDAKLNEISSCD  662 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~-------~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~-~LYw~D~~~~~I~~~~  662 (734)
                      .+..+++.+..+.+|++....       ..+|+..++....+...+. .-..|.+|++.+.++ +||.+....+.|..+|
T Consensus       265 g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D  343 (368)
T d1mdah_         265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence            346799999999999985321       1367777776543322111 124578899987765 5899998889999998


Q ss_pred             cCCCceEEEEcCCCCCCCCeEEEEEC
Q psy8875         663 YNGGNRRLVLYSPQTLSHPFSISTFE  688 (734)
Q Consensus       663 ~dG~~~~~i~~~~~~~~~P~gl~v~~  688 (734)
                      .........+   ..-..|.+|++.+
T Consensus       344 ~~tgk~~~~i---~~g~~P~~l~~~~  366 (368)
T d1mdah_         344 AASDQDQSSV---ELDKGPESLSVQN  366 (368)
T ss_dssp             SSSCEEEEEC---CCCSCCCEEECCC
T ss_pred             CCCCCEEEEE---ECCCCCCEEEEec
Confidence            7544332222   2345799999854

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.37  E-value=0.029  Score=56.34  Aligned_cols=189  Identities=16%  Similarity=0.158  Sum_probs=108.7

Q ss_pred             cceeeeeec--cceEEeecCCCceEEEecCCcceEEEeeec----cC---CeEEEEEeCC--CcEEEEecCCCCce-EEE
Q psy8875         474 HASLLFARK--HDIRKISLDHHEMTAIVNSTKSATAIDFVF----RT---GMIFWSDISE--KKIYKAPIDEGSER-TVV  541 (734)
Q Consensus       474 ~~~l~~~~~--~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~----~~---~~lyw~d~~~--~~I~~~~l~~g~~~-~~~  541 (734)
                      ..+|++...  ..|+..+|+|..+..+-  ..++..||+-.    ..   ..++.++...  .+|....++..... ..+
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             CccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            346666553  35888899887776552  34444444321    01   1233344332  23433333311111 111


Q ss_pred             ------EeCCCCCccceee--eccCCcEEEE-eCCCCeEEEEeC--C--CCceEEEEc--CCCCCceeEEEeCCCCeEEE
Q psy8875         542 ------IEEDKTIADGLAV--DWIYSHIYWT-DAHKNTIELANF--E--GTMRKVLVR--SYLDEPRSLALNPIDGWMYW  606 (734)
Q Consensus       542 ------~~~~~~~p~glAv--D~~~~~lY~t-d~~~~~I~~~~l--d--G~~~~~l~~--~~l~~P~~iavD~~~g~LYw  606 (734)
                            ....+..|.||++  ++.++.+|.. ....+++....+  +  |.....++.  .....+.|+++|..+++||+
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence                  1123556889998  7777776533 333567665544  2  222222221  33457899999999999999


Q ss_pred             EecCCCceEEEeccC---CCceEEEEEc----CCCCceeEEEecC---CCeEEEEeCCCCeEEEEecCCC
Q psy8875         607 SDWGQNAKIERAGMD---GSHRNMVIVS----DIKWPNGLTLDLV---QRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       607 td~~~~~~I~~~~ld---G~~~~~lv~~----~l~~P~glavD~~---~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ++.  ...||+..++   +...+.+...    -..-|.||||=..   +++|..++.+.++...++..+.
T Consensus       197 sEE--~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         197 AEE--DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EET--TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             ecC--ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            984  4678888775   3334444332    2356899998433   4588888888888888876654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.30  E-value=0.0078  Score=59.86  Aligned_cols=172  Identities=12%  Similarity=0.044  Sum_probs=116.7

Q ss_pred             eeeeeeccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCC-CcEEEEecCCCCceEEEEeCCCCCccceee
Q psy8875         476 SLLFARKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISE-KKIYKAPIDEGSERTVVIEEDKTIADGLAV  554 (734)
Q Consensus       476 ~l~~~~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~-~~I~~~~l~~g~~~~~~~~~~~~~p~glAv  554 (734)
                      ++.++.+..|+..++.+.....+ .....+.+++|.+..+.|+++.... ..|+..++.++...  .+......+..+++
T Consensus        17 ~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~--~~~~~~~~v~~~~~   93 (360)
T d1k32a3          17 LIAFVSRGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE--KFEENLGNVFAMGV   93 (360)
T ss_dssp             CEEEEETTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE--ECCCCCCSEEEEEE
T ss_pred             EEEEEECCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE--EeeCCCceEEeeee
Confidence            34556677888888888776665 4556789999999888888876554 35777777744322  23345566788999


Q ss_pred             eccCCcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC--------CCceEEEeccCCCceE
Q psy8875         555 DWIYSHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG--------QNAKIERAGMDGSHRN  626 (734)
Q Consensus       555 D~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~--------~~~~I~~~~ldG~~~~  626 (734)
                      .+.+..|..+.. .+.|.+.++++.....++.........+++.|...+|.++...        ....+...++.+....
T Consensus        94 spdg~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3          94 DRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             CTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             cccccccceecc-ccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence            987776666554 5788889998877766666666677899999988888877521        1234566666654333


Q ss_pred             EEEEcCCCCceeEEEecCCCeEEEEe
Q psy8875         627 MVIVSDIKWPNGLTLDLVQRRLYWVD  652 (734)
Q Consensus       627 ~lv~~~l~~P~glavD~~~~~LYw~D  652 (734)
                      .+ ........++++.+.+.+|++.-
T Consensus       173 ~~-~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         173 AA-TTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EC-SCSSSBEEEEEECTTSCEEEEEE
T ss_pred             ee-cccccccccccccCCCCEEEEEe
Confidence            22 22333456678887777887764

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.4e-05  Score=50.08  Aligned_cols=34  Identities=38%  Similarity=1.037  Sum_probs=28.9

Q ss_pred             ccccCcCC-CCCccc--ceeccCCceEEecCCCeeeC
Q psy8875         428 IDIDECET-PGSCSQ--ICLNEKGGFKCECVAGYIKD  461 (734)
Q Consensus       428 ~~~~eC~~-~~~C~~--~C~n~~g~~~C~C~~gy~~~  461 (734)
                      +|||||+. ..+|.+  +|+|+.++|.|.|++||.+.
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~   37 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP   37 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCC
Confidence            47899974 467865  89999999999999999875

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=9.1e-05  Score=53.52  Aligned_cols=37  Identities=30%  Similarity=0.710  Sum_probs=32.1

Q ss_pred             CCCcccceeccCC-ceEEecCCCeeeCCCCCcccccccc
Q psy8875         436 PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAEG  473 (734)
Q Consensus       436 ~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~~  473 (734)
                      ++.|+|+|+++.+ +|.|.|++||.+..++++ |.+...
T Consensus         7 NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~t-C~~~~~   44 (57)
T d1rfnb_           7 NGRCEQFCKNSADNKVVCSCTEGYRLAENQKS-CEPAVP   44 (57)
T ss_dssp             GGGCSSEEEECTTSCEEEECCTTEEECTTSSS-EEECSS
T ss_pred             CCCcccEeeeCCCCCeEeECCCCCEECCCCCc-cccCCC
Confidence            5889999999975 899999999999998887 987543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.22  E-value=0.0091  Score=61.01  Aligned_cols=190  Identities=13%  Similarity=0.106  Sum_probs=119.7

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCC-------------------eEEEE
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKN-------------------TIELA  574 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~-------------------~I~~~  574 (734)
                      .+.||+.|..+.+|.|++++.-...+++.-.....+.|+.+....+..|+......                   .+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            67899999999999999998433334444446678889888655566677653322                   23344


Q ss_pred             eCCCCceE--EEEcCCCCCceeEEEeCCCCeEEEEecCCC-------------ceEEEecc--------CCCce----EE
Q psy8875         575 NFEGTMRK--VLVRSYLDEPRSLALNPIDGWMYWSDWGQN-------------AKIERAGM--------DGSHR----NM  627 (734)
Q Consensus       575 ~ldG~~~~--~l~~~~l~~P~~iavD~~~g~LYwtd~~~~-------------~~I~~~~l--------dG~~~----~~  627 (734)
                      +.+.....  +.+   ...|..+++++..+++|+|.....             ..|...+.        +|...    ..
T Consensus       179 D~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         179 DADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             ETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             ecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            44432221  222   236889999999999999964321             01111111        11100    00


Q ss_pred             EEE-------------cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecC--------CC-ceEEEEcCCCCCCCCeEEE
Q psy8875         628 VIV-------------SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYN--------GG-NRRLVLYSPQTLSHPFSIS  685 (734)
Q Consensus       628 lv~-------------~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~d--------G~-~~~~i~~~~~~~~~P~gl~  685 (734)
                      ++.             ..-..|+|+.+++.+.+||++......+..+++.        .. .+.+++...+....|.--+
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            111             0124699999999999999999888899999873        22 2344444334444677677


Q ss_pred             EE-CCEEEEEeCCCCceEEEec
Q psy8875         686 TF-EDWLYWSDWQQKAIYKANK  706 (734)
Q Consensus       686 v~-~~~lywtd~~~~~v~~~~~  706 (734)
                      ++ .+..|-|-.-...|.+.+.
T Consensus       336 fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         336 FDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             ECTTSEEEEEETTTTEEEEEEH
T ss_pred             cCCCceEEEEeeccceEEEEec
Confidence            74 4789999888788877763

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=52.32  Aligned_cols=36  Identities=28%  Similarity=0.665  Sum_probs=31.1

Q ss_pred             CCCcccceeccCC-ceEEecCCCeeeCCCCCccccccc
Q psy8875         436 PGSCSQICLNEKG-GFKCECVAGYIKDPHHPTQCKAAE  472 (734)
Q Consensus       436 ~~~C~~~C~n~~g-~~~C~C~~gy~~~~~~~t~C~~~~  472 (734)
                      ++.|+|+|+++++ +|+|.|+.||.+..++++ |.+..
T Consensus         6 NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~t-C~~~~   42 (53)
T d2bz6l1           6 NGGCEQYCSDHTGTKRSCRCHEGYSLLADGVS-CTPTV   42 (53)
T ss_dssp             GGGCSSEEEEETTTEEEEECCTTEEECTTSSC-EEECS
T ss_pred             CCCCcCEeeeCCCCCEEeECCCCCEECCCCCc-ccCCC
Confidence            5789999999987 589999999999998877 87654

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.16  E-value=8.4e-05  Score=48.62  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=28.2

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCcc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      |+|+|..++..-...|++..++|+|.|++||    .|+.|
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~----~G~~C   36 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAF----EGRNC   36 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTE----ESTTS
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCC----cCCCC
Confidence            4678887655555689999999999999999    45555

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.032  Score=53.10  Aligned_cols=185  Identities=6%  Similarity=0.023  Sum_probs=111.0

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCc--EEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKK--IYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~--I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      .++.+.+.+.....+...........+.+....|++.-...+.  +......  ....................+..+.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (269)
T d2hqsa1          64 ALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA--SGQIRQVTDGRSNNTEPTWFPDSQNL  141 (269)
T ss_dssp             EEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEECCCCSSCEEEEEECTTSSEE
T ss_pred             ceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeecccc--cccceeeeeccccccccccccccccc
Confidence            3666677777777777777777888888887777766544432  2222222  22222222222222233444455667


Q ss_pred             EEEeCC--CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecC-CCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         562 YWTDAH--KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWG-QNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       562 Y~td~~--~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~-~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      +++...  ...|.+.++++.....+.. ........++.|....|++.... ....|++.+.++...+++..  ...-..
T Consensus       142 ~~~~~~~g~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~  218 (269)
T d2hqsa1         142 AFTSDQAGRPQVYKVNINGGAPQRITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS--TFLDET  218 (269)
T ss_dssp             EEEECTTSSCEEEEEETTSSCCEECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC--SSSCEE
T ss_pred             eecccccCCceEeeeecccccceeeec-ccccccccccccccceeEEEeecCCceeeeEeecccccceEeec--Cccccc
Confidence            776543  4578888888876655442 23334455677777777766543 34577788877766554432  222345


Q ss_pred             EEEecCCCeEEEEeC--CCCeEEEEecCCCceEEEEc
Q psy8875         639 LTLDLVQRRLYWVDA--KLNEISSCDYNGGNRRLVLY  673 (734)
Q Consensus       639 lavD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~i~~  673 (734)
                      .++.+.+++|+|+..  ....|+.++++|+..+.|..
T Consensus       219 p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~  255 (269)
T d2hqsa1         219 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  255 (269)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeC
Confidence            678888898877653  34578999999988776643

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=48.34  Aligned_cols=37  Identities=24%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             cccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         388 GVDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       388 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      |+|+|..++..-...|++..++|+|.|++||    .|+.|+
T Consensus         2 d~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~----~G~~Ce   38 (39)
T d1edmb_           2 DGDQCESNPCLNGGSCKDDINSYECWCPFGF----EGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTC----CSTTSC
T ss_pred             ccccCCCCCCCCCcEEEcCCCCEEEECCCCC----CCCCCC
Confidence            4678876655445689999999999999999    677774

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.16  Score=49.82  Aligned_cols=204  Identities=6%  Similarity=-0.047  Sum_probs=120.7

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceE-EEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERT-VVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~-~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..+.+|+|.+....|+ +-...+.|...++....... ..+.........+++.+... ++++-...+.|.+.++.....
T Consensus        98 ~~I~~v~~s~dg~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~  175 (337)
T d1gxra_          98 NYIRSCKLLPDGCTLI-VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTL  175 (337)
T ss_dssp             SBEEEEEECTTSSEEE-EEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE
T ss_pred             CcEEEEEEcCCCCEEE-Eeecccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            4578899988666654 44457788887776433322 22222333455677775444 444545567899998877665


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      .............|++.+...+|++...  .+.|...++......... ........|++++.+..|+.+. ..+.|...
T Consensus       176 ~~~~~~~~~~v~~l~~s~~~~~~~~~~~--d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~  251 (337)
T d1gxra_         176 VRQFQGHTDGASCIDISNDGTKLWTGGL--DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGM-ESSNVEVL  251 (337)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred             cccccccccccccccccccccccccccc--cccccccccccceeeccc-ccccceEEEEEcccccccceec-cccccccc
Confidence            5555455566788999887777777653  366766666443322222 2334567889987777776554 45678888


Q ss_pred             ecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         662 DYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       662 ~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      ++..........   ......+|++. .+.++++-...+.|...+..+++.+..+
T Consensus       252 d~~~~~~~~~~~---~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         252 HVNKPDKYQLHL---HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             ETTSSCEEEECC---CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccc---cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc
Confidence            887666544321   12334566663 3344444444456666666666655443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.07  E-value=0.015  Score=57.56  Aligned_cols=178  Identities=9%  Similarity=0.032  Sum_probs=108.2

Q ss_pred             EeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCC-CeEEEEeCCCCceEEEEc
Q psy8875         508 IDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHK-NTIELANFEGTMRKVLVR  586 (734)
Q Consensus       508 i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~-~~I~~~~ldG~~~~~l~~  586 (734)
                      -+|.|..++++-+. ..+.|+..++.++....  +. ....+..+++.+.++.|+++.... ..|.+.++.+...+.+. 
T Consensus         8 ~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~--~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-   82 (360)
T d1k32a3           8 EDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLK--VP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-   82 (360)
T ss_dssp             EEEEECGGGCEEEE-ETTEEEEECTTSSBEEE--CS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-
T ss_pred             ccccCCCCCEEEEE-ECCeEEEEECCCCcEEE--cc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-
Confidence            34555333333222 24566666665332222  22 234567888888888887765443 46888888877655443 


Q ss_pred             CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC---------CCe
Q psy8875         587 SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK---------LNE  657 (734)
Q Consensus       587 ~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~---------~~~  657 (734)
                      .....+..+++.|...+|.....  ...|+..++++.....++.........+++.+.+.+|.++...         ...
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             CCCceEEeeeecccccccceecc--ccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            55667889999998777777663  4678888888777666666555667789998888888877522         224


Q ss_pred             EEEEecCCCceEEEEcCCCCCCCCeEEEE--ECCEEEEEe
Q psy8875         658 ISSCDYNGGNRRLVLYSPQTLSHPFSIST--FEDWLYWSD  695 (734)
Q Consensus       658 I~~~~~dG~~~~~i~~~~~~~~~P~gl~v--~~~~lywtd  695 (734)
                      +...++.+.....+..   ......++++  .+.+|++..
T Consensus       161 ~~v~d~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         161 IHVYDMEGRKIFAATT---ENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             EEEEETTTTEEEECSC---SSSBEEEEEECTTSCEEEEEE
T ss_pred             eeeeccccCceeeecc---cccccccccccCCCCEEEEEe
Confidence            5566666554443322   1222334444  345666654

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00015  Score=47.93  Aligned_cols=36  Identities=28%  Similarity=0.601  Sum_probs=28.2

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ||+|..++..-...|++..++|+|.|++||    .|+.|+
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~----~G~~Ce   36 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGY----EGVHCE   36 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTE----ESSSSC
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCC----ccCcCe
Confidence            577876654445689999999999999999    566664

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0002  Score=47.31  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCccc
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      +++|+|+++|.+..+.|.|.|++||.|..++++
T Consensus         5 ~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Cei~   37 (39)
T d1xkba1           5 TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELF   37 (39)
T ss_dssp             TCCCCSSCEECCCSSSCCEECCTTEETTTTCEE
T ss_pred             CCCCCCCcEEECCCCCEEEECCCCCCcCcCeEc
Confidence            568999999999999999999999999887753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.22  Score=48.67  Aligned_cols=213  Identities=9%  Similarity=-0.061  Sum_probs=113.5

Q ss_pred             cceEEEeeecc-CCeEEEEEeCCCcEEEEecCCCCc---eEE----EEeCCCCCccceeeeccCCcEEEEeCC-CCeEEE
Q psy8875         503 KSATAIDFVFR-TGMIFWSDISEKKIYKAPIDEGSE---RTV----VIEEDKTIADGLAVDWIYSHIYWTDAH-KNTIEL  573 (734)
Q Consensus       503 ~~~~~i~~d~~-~~~lyw~d~~~~~I~~~~l~~g~~---~~~----~~~~~~~~p~glAvD~~~~~lY~td~~-~~~I~~  573 (734)
                      ..+.+++|.|. .+.+..+-..++.|...++..+..   ...    ...........|++.+.+..|..+... ...+.+
T Consensus        64 ~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          64 SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             SCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence            45788999874 345555555667666554432221   011    111122234567777666666555443 445666


Q ss_pred             EeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc---CCCCceeEEEecCCCeEEE
Q psy8875         574 ANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS---DIKWPNGLTLDLVQRRLYW  650 (734)
Q Consensus       574 ~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~---~l~~P~glavD~~~~~LYw  650 (734)
                      ...+.......+.........+++.|...+++.+-. ..+.|...++........+..   .......|++.+..+.++.
T Consensus       144 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         144 ISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG-DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             EETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE-TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred             EeecccccceeeeecccccccccccccccceEEEee-cccccccccccccccceecccccCCCCccEEeeeccccceecc
Confidence            666644333333334455678999988777666552 335565555433222222211   1233567888877777777


Q ss_pred             EeCCCCeEEEEecCCCceEEEEcCCCC-C-CCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         651 VDAKLNEISSCDYNGGNRRLVLYSPQT-L-SHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       651 ~D~~~~~I~~~~~dG~~~~~i~~~~~~-~-~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +-...+.|...++........+..... . ..-++++...+.++++-...+.|...+..+++.+..+.
T Consensus       223 s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         223 TVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             EEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence            766677888888654433333322111 1 11234444445455555555667666777776665553

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.0001  Score=48.93  Aligned_cols=26  Identities=31%  Similarity=0.881  Sum_probs=21.2

Q ss_pred             CccccCCCcceeecCCCcEecCCCCccc
Q psy8875         401 HKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       401 ~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      +.|+|++++|.|.|++||..  +|++|.
T Consensus        13 A~C~Nt~Gsy~C~C~~Gy~G--dG~~C~   38 (40)
T d1gl4a2          13 AECRDYATGFCCRCVANYTG--NGRQCV   38 (40)
T ss_dssp             EEEEECSSCEEEEECTTEEE--CSSSEE
T ss_pred             CEeecCCCCeEeECCCCCcC--CCCEee
Confidence            46889999999999999976  577775

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00018  Score=47.51  Aligned_cols=33  Identities=15%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCccc
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      +++|.|+++|.+..++|+|.|++||.|..++.+
T Consensus         6 ~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce~d   38 (39)
T d2vj3a2           6 SNPCQNDATCLDQIGEFQCICMPGYEGVHCEVN   38 (39)
T ss_dssp             TCCCCSSCEEEECSSCEEEECCTTEESSSSCEE
T ss_pred             CCCCCCCCEEECCCCCEEEeCCCCCccCcCeeC
Confidence            568999999999889999999999999887653

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.72  E-value=0.00017  Score=47.15  Aligned_cols=31  Identities=13%  Similarity=0.129  Sum_probs=26.9

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDL  215 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~  215 (734)
                      +++|+|+++|.+....|+|.|++||.|..++
T Consensus         7 ~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   37 (37)
T d2c4fl1           7 SSPCQNGGSCKDQLQSYICFCLPAFEGRNCE   37 (37)
T ss_dssp             GCCCCTTCEEEEETTEEEEECCTTEESTTSC
T ss_pred             CCCCCCCCEEECCCCCeEEECCCCCcCCCCC
Confidence            5689999999988899999999999987653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.35  Score=47.21  Aligned_cols=195  Identities=10%  Similarity=0.035  Sum_probs=110.8

Q ss_pred             ccceEEeecCCCceE---EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccC
Q psy8875         482 KHDIRKISLDHHEMT---AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIY  558 (734)
Q Consensus       482 ~~~I~~i~l~~~~~~---~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~  558 (734)
                      +..|+..++......   .+.........+++++....| ++-...+.|...++..+.. ..........+..|++.+.+
T Consensus       118 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~  195 (337)
T d1gxra_         118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDG  195 (337)
T ss_dssp             SSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccc-cccccccccccccccccccc
Confidence            344555555433322   222334556778888755444 4545677888888874432 22222234456678887666


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      ..|+++.. .+.|.+.++......... .....+..|+++|...+|+....  .+.|...++........ ...-.....
T Consensus       196 ~~~~~~~~-d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~i~~  270 (337)
T d1gxra_         196 TKLWTGGL-DNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGME--SSNVEVLHVNKPDKYQL-HLHESCVLS  270 (337)
T ss_dssp             SEEEEEET-TSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEET--TSCEEEEETTSSCEEEE-CCCSSCEEE
T ss_pred             cccccccc-cccccccccccceeeccc-ccccceEEEEEcccccccceecc--ccccccccccccccccc-cccccccce
Confidence            66666544 578888887654332222 23456789999997777776553  35677777765544322 223344678


Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE
Q psy8875         639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF  687 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~  687 (734)
                      |++.+.+.+|+ +-...+.|...++..........   ......++++.
T Consensus       271 v~~s~~g~~l~-s~s~Dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~s  315 (337)
T d1gxra_         271 LKFAYCGKWFV-STGKDNLLNAWRTPYGASIFQSK---ESSSVLSCDIS  315 (337)
T ss_dssp             EEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEEC
T ss_pred             EEECCCCCEEE-EEeCCCeEEEEECCCCCEEEEcc---CCCCEEEEEEe
Confidence            88876665554 43445778877765444332222   12345567663

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00036  Score=46.14  Aligned_cols=31  Identities=23%  Similarity=0.335  Sum_probs=27.5

Q ss_pred             CCcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875         185 SHLCLPAPQINAHSPKISCACPEGLKLLPDL  215 (734)
Q Consensus       185 ~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~  215 (734)
                      +++|.|+++|.+..+.|+|.|++||.|..++
T Consensus         8 ~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           8 SNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             TCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            5789999999988899999999999998765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.081  Score=55.46  Aligned_cols=153  Identities=10%  Similarity=0.065  Sum_probs=78.8

Q ss_pred             eEEEEeCCCCceEEEEcC-CC---C-CceeEEEeCCCCeEEEE---ecCCCceEEEecc-------CCCceEEEEEcCCC
Q psy8875         570 TIELANFEGTMRKVLVRS-YL---D-EPRSLALNPIDGWMYWS---DWGQNAKIERAGM-------DGSHRNMVIVSDIK  634 (734)
Q Consensus       570 ~I~~~~ldG~~~~~l~~~-~l---~-~P~~iavD~~~g~LYwt---d~~~~~~I~~~~l-------dG~~~~~lv~~~l~  634 (734)
                      .|.+++......++++.. .-   . ......+.+..+.++|.   +.+....++...+       .|...+.|......
T Consensus       281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~  360 (465)
T d1xfda1         281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD  360 (465)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC
T ss_pred             eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCce
Confidence            455666655555554432 11   1 12344566655655443   3223345655543       22222222222221


Q ss_pred             CceeEEEecCCCeEEEEeC----CCCeEEEEecCCCceEEEEcCCC-CCCCCeEEEEEC-CEEEEEeC---CCCceEEEe
Q psy8875         635 WPNGLTLDLVQRRLYWVDA----KLNEISSCDYNGGNRRLVLYSPQ-TLSHPFSISTFE-DWLYWSDW---QQKAIYKAN  705 (734)
Q Consensus       635 ~P~glavD~~~~~LYw~D~----~~~~I~~~~~dG~~~~~i~~~~~-~~~~P~gl~v~~-~~lywtd~---~~~~v~~~~  705 (734)
                      --.-+++|..++.||++-.    ....|++++++|+..+..++... ....-..+++.. +..|+...   ..-.+..++
T Consensus       361 V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~  440 (465)
T d1xfda1         361 VTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHN  440 (465)
T ss_dssp             EEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEE
T ss_pred             EEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEE
Confidence            1233679999999999853    34579999999987655443110 011123556632 23333222   223455556


Q ss_pred             ccCCCceEEEecccccC
Q psy8875         706 KFTGDNLTAITGVHQTH  722 (734)
Q Consensus       706 ~~~G~~~~~l~~~~~l~  722 (734)
                      ..+|+.+.+|..+..|.
T Consensus       441 ~~~~~~~~~Le~N~~l~  457 (465)
T d1xfda1         441 TTDKKKMFDLETNEHVK  457 (465)
T ss_dssp             TTTCCEEEEEECCHHHH
T ss_pred             CCCCCEEEEEcCCHHHH
Confidence            67888888887765553

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00044  Score=44.49  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=28.0

Q ss_pred             CC-CCcccCCCcccCCCCCccccCCCCCccCCCc
Q psy8875         183 HC-SHLCLPAPQINAHSPKISCACPEGLKLLPDL  215 (734)
Q Consensus       183 ~C-~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~  215 (734)
                      +| +++|.|+++|.+....|+|.|++||.|..+|
T Consensus         2 ~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~CE   35 (35)
T d2vj3a3           2 ECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ   35 (35)
T ss_dssp             TTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CCCCCCCCCCcEEECCCCCeEEECCCCCCCCCcC
Confidence            35 5689999999988899999999999987653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.49  E-value=0.1  Score=50.08  Aligned_cols=196  Identities=11%  Similarity=0.047  Sum_probs=105.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|.+.... .++-...+.|+..++..+.....+.......+..|++.+. +.++.+.. .+.|.+.++.+...
T Consensus        12 ~~~V~~l~~s~dg~~-l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~~-d~~v~~~~~~~~~~   88 (299)
T d1nr0a2          12 NKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVSW-DDHLKVVPAGGSGV   88 (299)
T ss_dssp             SSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEET-TTEEEEECSSSSSS
T ss_pred             CCCcEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeecccc-eeeEEEeccCCccc
Confidence            456778999875544 4455567788888887554333222222334567777654 45665544 57787777655321


Q ss_pred             E---EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeE
Q psy8875         582 K---VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEI  658 (734)
Q Consensus       582 ~---~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I  658 (734)
                      .   .+.......+..+++.+....+..+..   ..|...+..   +...+ .....+..+++.+.+..|+... ..+.|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~---~~i~~~~~~---~~~~~-~~~~~~~~~~~s~~~~~l~~g~-~dg~i  160 (299)
T d1nr0a2          89 DSSKAVANKLSSQPLGLAVSADGDIAVAACY---KHIAIYSHG---KLTEV-PISYNSSCVALSNDKQFVAVGG-QDSKV  160 (299)
T ss_dssp             CTTSCCEEECSSCEEEEEECTTSSCEEEEES---SEEEEEETT---EEEEE-ECSSCEEEEEECTTSCEEEEEE-TTSEE
T ss_pred             ccccccccccccccccccccccccccccccc---ccccccccc---ccccc-cccccccccccccccccccccc-ccccc
Confidence            1   122233456788999886665655542   344443321   11111 1233466788876555555544 45788


Q ss_pred             EEEecCCCceEEEEcCCCCCCCCeEEEEE--CCEEEEEeCCCCceEEEeccCCC
Q psy8875         659 SSCDYNGGNRRLVLYSPQTLSHPFSISTF--EDWLYWSDWQQKAIYKANKFTGD  710 (734)
Q Consensus       659 ~~~~~dG~~~~~i~~~~~~~~~P~gl~v~--~~~lywtd~~~~~v~~~~~~~G~  710 (734)
                      ...++.+.....+... .......+|++.  +.+|+.... .+.|+..+..++.
T Consensus       161 ~~~d~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~  212 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQ-SRKVIPYSVANNF  212 (299)
T ss_dssp             EEEEEETTEEEEEEEE-ECSSCEEEEEECTTSSEEEEEET-TSCEEEEEGGGTT
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccc-ccccccccccccc
Confidence            8888776654333211 112334566663  344444443 4556666554443

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.00069  Score=43.52  Aligned_cols=34  Identities=35%  Similarity=0.783  Sum_probs=24.4

Q ss_pred             cccccCCCCCcCccccCCCcceeecCCCcEecCCCCcc
Q psy8875         390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTC  427 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C  427 (734)
                      |+|..++..-..+|++..++|+|.|++||    .|+.|
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~----~G~~C   34 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGF----TGHLC   34 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTE----ESSSS
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCC----CCCCc
Confidence            35655444444589999999999999999    45555

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.43  E-value=0.4  Score=47.65  Aligned_cols=154  Identities=9%  Similarity=-0.093  Sum_probs=85.0

Q ss_pred             eEEEeeeccCCeEEEEEeCCCcEEEEecCCCCce-EEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE-
Q psy8875         505 ATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSER-TVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK-  582 (734)
Q Consensus       505 ~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~-~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~-  582 (734)
                      +..++|++....| .+-..++.|...++.++... ...+..-...+..|++.+.++.| .+-...+.|.+.+++..... 
T Consensus        10 It~~~~s~dg~~l-a~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l-~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          10 ISCHAWNKDRTQI-AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             CCEEEECTTSSEE-EEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEE-EEEETTSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCEE-EEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEE-EEEECCCeEEEEeeccccccc
Confidence            5678888755444 44445667777776643322 22233334457888988765544 44444678988888755433 


Q ss_pred             EEE-cCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE-EEEE--cC-CCCceeEEEecCCCeEEEEeCCCCe
Q psy8875         583 VLV-RSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN-MVIV--SD-IKWPNGLTLDLVQRRLYWVDAKLNE  657 (734)
Q Consensus       583 ~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~-~lv~--~~-l~~P~glavD~~~~~LYw~D~~~~~  657 (734)
                      ++. ......+..++++|...+|+....  .+.|....++..... .+..  .. -.....+++++.+.+|. +-...+.
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~-s~s~D~~  164 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA-AGSCDFK  164 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE-EEETTSC
T ss_pred             ccccccccccccccccccccccceeecc--cCcceeeeeeccccccccccccccccccccccccccccccee-ccccCcE
Confidence            332 233456789999997777776653  244444334333222 2211  11 12346678876555554 3334455


Q ss_pred             EEEEec
Q psy8875         658 ISSCDY  663 (734)
Q Consensus       658 I~~~~~  663 (734)
                      |...++
T Consensus       165 v~v~~~  170 (371)
T d1k8kc_         165 CRIFSA  170 (371)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            655554

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00081  Score=44.32  Aligned_cols=35  Identities=31%  Similarity=0.657  Sum_probs=26.2

Q ss_pred             cccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         390 DECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      |+|..++..-...|++..++|+|.|++||    .|+.|+
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~----~G~~Ce   35 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGF----EGKNCE   35 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTE----ETTTTC
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCC----CcCcCe
Confidence            45665544444589999999999999999    577774

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.07  E-value=0.59  Score=43.77  Aligned_cols=159  Identities=9%  Similarity=0.018  Sum_probs=90.6

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ...+.+|+|++... +.++-..++.|+..++..+.....+ ......+..|++.+....|.... ....+...+......
T Consensus        17 ~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~~-~~h~~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   93 (317)
T d1vyhc1          17 RSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTL-KGHTDSVQDISFDHSGKLLASCS-ADMTIKLWDFQGFEC   93 (317)
T ss_dssp             SSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEE-CCCSSCEEEEEECTTSSEEEEEE-TTSCCCEEETTSSCE
T ss_pred             CCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEEE-eCCCCcEEEEeeecccccccccc-ccccccccccccccc
Confidence            45677899987554 4455556788888888765554443 32344567788876554444443 345555555544444


Q ss_pred             EEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEE
Q psy8875         582 KVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSC  661 (734)
Q Consensus       582 ~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~  661 (734)
                      .............+++.+....|.....  .+.+...++........+.........+++++.+..|+.+. ..+.|...
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~v~~~  170 (317)
T d1vyhc1          94 IRTMHGHDHNVSSVSIMPNGDHIVSASR--DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS-NDQTVRVW  170 (317)
T ss_dssp             EECCCCCSSCEEEEEECSSSSEEEEEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE-TTSCEEEE
T ss_pred             ccccccccccceeeeccCCCceEEeecc--CcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe-CCCeEEEE
Confidence            3333344556677888776666665542  35565555554333333444445566777775555544433 34556666


Q ss_pred             ecCCC
Q psy8875         662 DYNGG  666 (734)
Q Consensus       662 ~~dG~  666 (734)
                      ++...
T Consensus       171 ~~~~~  175 (317)
T d1vyhc1         171 VVATK  175 (317)
T ss_dssp             ETTTC
T ss_pred             eeccc
Confidence            55443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.87  E-value=0.94  Score=44.40  Aligned_cols=208  Identities=10%  Similarity=0.003  Sum_probs=108.3

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      ..+.+|+|.+... +.++-...+.|...+...+... .........+..+++.+....++.+. ..+.|.+.++......
T Consensus       122 ~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         122 LYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEE-EEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEE
T ss_pred             CCEEEEEECCCCC-cceecccccccccccccccccc-cccccccccccccccccccccccccc-cceeeeeeeccccccc
Confidence            3467899987544 4455556777887777643322 22222334556777776555555554 4578888888765544


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEc-------CCCCceeEEEecCCCeEEEEeCCC
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVS-------DIKWPNGLTLDLVQRRLYWVDAKL  655 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~-------~l~~P~glavD~~~~~LYw~D~~~  655 (734)
                      ... .....+..+++.+..+.++.+.. ..+.|...++........+..       .......|++.+.+..|+.+ ...
T Consensus       199 ~~~-~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d  275 (388)
T d1erja_         199 LTL-SIEDGVTTVAVSPGDGKYIAAGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLD  275 (388)
T ss_dssp             EEE-ECSSCEEEEEECSTTCCEEEEEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETT
T ss_pred             ccc-ccccccccccccCCCCCeEEEEc-CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE-ECC
Confidence            433 33345566777776776666542 235666666543322211111       11234678887655555544 345


Q ss_pred             CeEEEEecCCCceEEEEcC----------CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         656 NEISSCDYNGGNRRLVLYS----------PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       656 ~~I~~~~~dG~~~~~i~~~----------~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      +.|...++...........          .........|++. .+.++++-...+.|+..+..+|+.+..+.
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence            6777776653322111100          0111223455652 23333343344667777777777766654

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.93  Score=43.85  Aligned_cols=163  Identities=10%  Similarity=-0.033  Sum_probs=91.1

Q ss_pred             cceEEEeeeccCCeEEEEEeC-CCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCce
Q psy8875         503 KSATAIDFVFRTGMIFWSDIS-EKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMR  581 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~-~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~  581 (734)
                      ..+..|+|.+...+|..+... ...+.....+.+..... +.........+++.+....++++-...+.|...++.....
T Consensus       116 ~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~  194 (325)
T d1pgua1         116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGE-VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF  194 (325)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEE-CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEE
T ss_pred             CcEEEEEECCCCCccceeeccccceEEEEeeccccccee-eeecccccccccccccccceEEEeeccccccccccccccc
Confidence            456788898776666665433 34566666664432222 2222344567888877777777766678888887654333


Q ss_pred             EEEEc---CCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEE--EecCCCeEEEEeCCCC
Q psy8875         582 KVLVR---SYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLT--LDLVQRRLYWVDAKLN  656 (734)
Q Consensus       582 ~~l~~---~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gla--vD~~~~~LYw~D~~~~  656 (734)
                      .....   ........|++.|..+.++.+-. ..+.|...++.-......+........++.  +....++++.+-...+
T Consensus       195 ~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~-~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~  273 (325)
T d1pgua1         195 SASDRTHHKQGSFVRDVEFSPDSGEFVITVG-SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADA  273 (325)
T ss_dssp             EEEECSSSCTTCCEEEEEECSTTCCEEEEEE-TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTS
T ss_pred             ceecccccCCCCccEEeeeccccceeccccc-cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCC
Confidence            22221   22344678999998777777653 245676666543222222222122222333  3323444445555667


Q ss_pred             eEEEEecCCCc
Q psy8875         657 EISSCDYNGGN  667 (734)
Q Consensus       657 ~I~~~~~dG~~  667 (734)
                      .|...++....
T Consensus       274 ~i~iwd~~~~~  284 (325)
T d1pgua1         274 TIRVWDVTTSK  284 (325)
T ss_dssp             EEEEEETTTTE
T ss_pred             eEEEEECCCCC
Confidence            78887876443

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.00076  Score=44.49  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             CC-CCcccCCCcccCCCCCccccCCCCCccCCCcc
Q psy8875         183 HC-SHLCLPAPQINAHSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       183 ~C-~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~  216 (734)
                      .| +++|.|+++|.+..+.|.|.|++||.|..++.
T Consensus         3 ~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce~   37 (39)
T d1g1ta2           3 ACTNTSCSGHGECVETINNYTCKCDPGFSGLKCEQ   37 (39)
T ss_dssp             CCCTTGGGGSEEEEEETTEEEEEECTTEESTTSCE
T ss_pred             cccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcCc
Confidence            45 56899999999888999999999999987764

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0011  Score=43.89  Aligned_cols=34  Identities=15%  Similarity=0.244  Sum_probs=29.4

Q ss_pred             CC-CCcccCCCcccCCCCCccccCCCCCccCCCcc
Q psy8875         183 HC-SHLCLPAPQINAHSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       183 ~C-~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~  216 (734)
                      .| +++|.|+++|.+..+.|+|.|++||.|..++.
T Consensus         3 ~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce~   37 (40)
T d1g1sa2           3 SCQDMSCSKQGECLETIGNYTCSCYPGFYGPECEY   37 (40)
T ss_dssp             CCCTTGGGGSEEEEECSSSEEEEECTTEESTTSCE
T ss_pred             cccCCcCCCCcEEECCCCCeEEeCCCCccCCCCCC
Confidence            45 56899999999988999999999999987764

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.72  E-value=0.003  Score=41.63  Aligned_cols=22  Identities=36%  Similarity=0.780  Sum_probs=20.2

Q ss_pred             cceeccCCceEEecCCCeeeCC
Q psy8875         441 QICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       441 ~~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      +.|+|++|+|.|.|.+||.++.
T Consensus        13 A~C~Nt~Gsy~C~C~~Gy~GdG   34 (40)
T d1gl4a2          13 AECRDYATGFCCRCVANYTGNG   34 (40)
T ss_dssp             EEEEECSSCEEEEECTTEEECS
T ss_pred             CEeecCCCCeEeECCCCCcCCC
Confidence            4799999999999999999975

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0019  Score=43.05  Aligned_cols=34  Identities=18%  Similarity=0.340  Sum_probs=27.5

Q ss_pred             CCcccCCCcccCC--CCCccccCCCCCccCCCcccc
Q psy8875         185 SHLCLPAPQINAH--SPKISCACPEGLKLLPDLLMC  218 (734)
Q Consensus       185 ~~~C~~~~~~~~~--~~~~~C~C~~G~~~~~~~~~~  218 (734)
                      +++|+|+++|.+.  ...|.|.|++||.|..++.+.
T Consensus         3 ~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce~~~   38 (41)
T d1tpga1           3 EPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCEIDT   38 (41)
T ss_dssp             SCCSCTTCEEEEESSSSCEEEECCTTCBSSSCCBCS
T ss_pred             CCCCCCCCEEecCCCCCCeEECCCCCCCCCCcCcCc
Confidence            4688999988753  457899999999999888754

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0024  Score=43.96  Aligned_cols=36  Identities=19%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             CCCC-CCcccCCCcccCCCCCccccCCCCCccCCCccc
Q psy8875         181 NGHC-SHLCLPAPQINAHSPKISCACPEGLKLLPDLLM  217 (734)
Q Consensus       181 ~~~C-~~~C~~~~~~~~~~~~~~C~C~~G~~~~~~~~~  217 (734)
                      .+.| +++|.| ++|.+..++|.|.|++||.|..++.+
T Consensus         8 ~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce~~   44 (48)
T d1autl1           8 EHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQRE   44 (48)
T ss_dssp             CCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSCEE
T ss_pred             CCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcccc
Confidence            3466 568988 58988889999999999999887754

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0017  Score=43.05  Aligned_cols=27  Identities=22%  Similarity=0.656  Sum_probs=21.9

Q ss_pred             cCccccCCCcceeecCCCcEecCCCCccccc
Q psy8875         400 LHKCVDLPVGYMCECNEGYKLSSNRHTCIDI  430 (734)
Q Consensus       400 ~~~C~~~~~~~~C~C~~G~~l~~~~~~C~~~  430 (734)
                      ...|++..++|+|.|++||    .|..|+.+
T Consensus        12 gg~C~~~~~~y~C~C~~g~----~G~~Ce~~   38 (40)
T d1g1sa2          12 QGECLETIGNYTCSCYPGF----YGPECEYV   38 (40)
T ss_dssp             SEEEEECSSSEEEEECTTE----ESTTSCEE
T ss_pred             CcEEECCCCCeEEeCCCCc----cCCCCCCC
Confidence            3478899999999999999    57777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.47  E-value=1.1  Score=42.48  Aligned_cols=228  Identities=9%  Similarity=-0.033  Sum_probs=108.2

Q ss_pred             cceEEeecCCCceEE-EecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--e-EEEEeCCCCCccceeeeccC
Q psy8875         483 HDIRKISLDHHEMTA-IVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--R-TVVIEEDKTIADGLAVDWIY  558 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~-l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~-~~~~~~~~~~p~glAvD~~~  558 (734)
                      ..|+.-++....... +......+.+|+|.+....|+.. ...+.|..........  . ...+. ..............
T Consensus        77 g~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  154 (340)
T d1tbga_          77 GKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDD  154 (340)
T ss_dssp             TEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEE-ETTCCEEEEESSSSCSCCCEEEEEC-CCSSCEEEEEEEET
T ss_pred             CceeeeecccceeEEEEecccccEEeeEeeccceeeeee-cccceeecccccccccccccceecc-cccccccccccccc
Confidence            445555555443332 22234567889998766555544 3455666555442221  1 11111 11111112222222


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCcee
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNG  638 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~g  638 (734)
                      ..+.... ....+.......................+...+ .+.++.+... .+.|...++........+.......+.
T Consensus       155 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-d~~v~i~d~~~~~~~~~~~~h~~~i~~  231 (340)
T d1tbga_         155 NQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGAC-DASAKLWDVREGMCRQTFTGHESDINA  231 (340)
T ss_dssp             TEEEEEE-TTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEET-TTEEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             ccccccc-ccccccccccccccccccccccceeEeeecccc-ccceeEEeec-CceEEEEECCCCcEEEEEeCCCCCeEE
Confidence            3333322 233333333333333333322333334444444 3444444322 356666565443332223333344678


Q ss_pred             EEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         639 LTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       639 lavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |++++.+..|+ +-...+.|...++........+...........|++. .+.++++-...+.|...+..+++.+..+.
T Consensus       232 v~~~p~~~~l~-s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         232 ICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEECCCCCEEE-EEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            89986555554 4445677888887766554444322222223456663 34444444445677777777777766664

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.43  E-value=1  Score=41.90  Aligned_cols=227  Identities=8%  Similarity=-0.018  Sum_probs=107.8

Q ss_pred             cceEEeecCCCceE-EEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcE
Q psy8875         483 HDIRKISLDHHEMT-AIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHI  561 (734)
Q Consensus       483 ~~I~~i~l~~~~~~-~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~l  561 (734)
                      ..|+.-++...... .+......+.++++++....+... .....+........ ...............+++.+....|
T Consensus        39 g~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  116 (317)
T d1vyhc1          39 ATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC-SADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHI  116 (317)
T ss_dssp             SCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEE-ETTSCCCEEETTSS-CEEECCCCCSSCEEEEEECSSSSEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccc-cccccccccccccc-ccccccccccccceeeeccCCCceE
Confidence            45655565544333 332334567888888755554443 34444444444422 2222222223344556666544444


Q ss_pred             EEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEE
Q psy8875         562 YWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTL  641 (734)
Q Consensus       562 Y~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glav  641 (734)
                      + +-...+.+.+.++........+.........+++++...+|.....  .+.|...++........+.........+++
T Consensus       117 ~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~  193 (317)
T d1vyhc1         117 V-SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--DQTVRVWVVATKECKAELREHRHVVECISW  193 (317)
T ss_dssp             E-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             E-eeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeC--CCeEEEEeeccceeeEEEecCCCCceEEEE
Confidence            4 4444677888887655444444455566788888876555544442  345555554433222222111111122222


Q ss_pred             ec-------------------CCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEE-CCEEEEEeCCCCce
Q psy8875         642 DL-------------------VQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTF-EDWLYWSDWQQKAI  701 (734)
Q Consensus       642 D~-------------------~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~-~~~lywtd~~~~~v  701 (734)
                      .+                   ..+.++.+-...+.|...++........+..  ......+|++. .+.++++-...+.|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~s~~~dg~i  271 (317)
T d1vyhc1         194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKTL  271 (317)
T ss_dssp             CCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEEC--CSSCEEEEEECSSSSCEEEEETTTEE
T ss_pred             eeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC--CCCCEEEEEECCCCCEEEEEECCCeE
Confidence            11                   1223333333445666666544332222221  12223455552 33334443344666


Q ss_pred             EEEeccCCCceEEEe
Q psy8875         702 YKANKFTGDNLTAIT  716 (734)
Q Consensus       702 ~~~~~~~G~~~~~l~  716 (734)
                      ...+..+++.+.++.
T Consensus       272 ~iwd~~~~~~~~~~~  286 (317)
T d1vyhc1         272 RVWDYKNKRCMKTLN  286 (317)
T ss_dssp             EEECCTTSCCCEEEE
T ss_pred             EEEECCCCcEEEEEc
Confidence            666766777666654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.30  E-value=1.5  Score=43.01  Aligned_cols=206  Identities=13%  Similarity=0.106  Sum_probs=110.0

Q ss_pred             cceEEeecCCCceEEE---ecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE-EeCCCCCccceeeeccC
Q psy8875         483 HDIRKISLDHHEMTAI---VNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV-IEEDKTIADGLAVDWIY  558 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l---~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~-~~~~~~~p~glAvD~~~  558 (734)
                      ..|+..++.+..+..+   ......+.+|+|.+..+.|. +-...+.|+..++..+.....+ +......+..|++.+..
T Consensus        29 ~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~-s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~  107 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE  107 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS
T ss_pred             CEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE-EEECCCeEEEEeeccccccccccccccccccccccccccc
Confidence            4455555555443322   22345678999998666554 4345677887777744433333 22223456788888766


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEE----EcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCc----------
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVL----VRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSH----------  624 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l----~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~----------  624 (734)
                      +.|+... ..+.|.+..++.......    ..........++++|...+|.....  .+.|...++....          
T Consensus       108 ~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~--D~~v~v~~~~~~~~~~~~~~~~~  184 (371)
T d1k8kc_         108 KKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC--DFKCRIFSAYIKEVEERPAPTPW  184 (371)
T ss_dssp             SEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET--TSCEEEEECCCTTTSCCCCCBTT
T ss_pred             ccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceecccc--CcEEEEEeeccCccccccccccc
Confidence            6555554 456676666544332211    1122345678899886555543332  2344333332111          


Q ss_pred             ------eEEEEE--cCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCC-eEEEE-ECCEEEEE
Q psy8875         625 ------RNMVIV--SDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHP-FSIST-FEDWLYWS  694 (734)
Q Consensus       625 ------~~~lv~--~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P-~gl~v-~~~~lywt  694 (734)
                            ...+..  .......+|++.+.+.+|+.+. ..+.|...++........+..   -..| .+|++ .++.++.+
T Consensus       185 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~---~~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLAS---ETLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             BSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEEC---SSCCEEEEEEEETTEEEEE
T ss_pred             cccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEEeeecccceeeeec---ccccceeeeecCCCCEEEE
Confidence                  011111  2234457889988777776664 457888888765544333321   1223 46666 35555554


Q ss_pred             eC
Q psy8875         695 DW  696 (734)
Q Consensus       695 d~  696 (734)
                      -.
T Consensus       261 g~  262 (371)
T d1k8kc_         261 GH  262 (371)
T ss_dssp             ET
T ss_pred             Ec
Confidence            33

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.11  E-value=1.3  Score=41.13  Aligned_cols=109  Identities=12%  Similarity=0.001  Sum_probs=65.9

Q ss_pred             CCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCC-----CCeEEEEeCCCCceEEEEcC-
Q psy8875         514 TGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAH-----KNTIELANFEGTMRKVLVRS-  587 (734)
Q Consensus       514 ~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~-----~~~I~~~~ldG~~~~~l~~~-  587 (734)
                      .++|.|+.  .+.|+.++++++.. +.+. .......+.++-+.++.|+|+...     ...|+++++++...+.|... 
T Consensus        12 G~~v~f~~--~~dl~~~d~~~g~~-~~Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~   87 (281)
T d1k32a2          12 GDRIIFVC--CDDLWEHDLKSGST-RKIV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFS   87 (281)
T ss_dssp             TTEEEEEE--TTEEEEEETTTCCE-EEEE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCC
T ss_pred             CCEEEEEe--CCcEEEEECCCCCE-EEEe-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecC
Confidence            44555553  34577777774443 3332 233445667777778888877432     13588999988876655322 


Q ss_pred             -----CCCCceeEEEeCCCCeEEEEecCC----CceEEEeccCCCceE
Q psy8875         588 -----YLDEPRSLALNPIDGWMYWSDWGQ----NAKIERAGMDGSHRN  626 (734)
Q Consensus       588 -----~l~~P~~iavD~~~g~LYwtd~~~----~~~I~~~~ldG~~~~  626 (734)
                           .......++..|....|+++....    ...+...+.++...+
T Consensus        88 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (281)
T d1k32a2          88 GKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV  135 (281)
T ss_dssp             EEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE
T ss_pred             CCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE
Confidence                 123456778888888899886532    234566666665443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.06  E-value=0.76  Score=47.16  Aligned_cols=107  Identities=9%  Similarity=0.057  Sum_probs=63.3

Q ss_pred             CceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCC------CCeEEEEecCCCceEEEEcCCCCCCCC---e
Q psy8875         612 NAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAK------LNEISSCDYNGGNRRLVLYSPQTLSHP---F  682 (734)
Q Consensus       612 ~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~------~~~I~~~~~dG~~~~~i~~~~~~~~~P---~  682 (734)
                      ..+|+..+.+|.....+...... ..++ +.+.++.||++-..      ...|++++++|+.+..+++.. ...+.   .
T Consensus       343 ~~~ly~~~~~g~~~~~lt~g~~~-v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~-~~~~~~~~~  419 (470)
T d2bgra1         343 YRHICYFQIDKKDCTFITKGTWE-VIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE-LNPERCQYY  419 (470)
T ss_dssp             CEEEEEEETTCSCCEESCCSSSC-EEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT-TSTTTBCBE
T ss_pred             CceeEEEeccCCceeeeccCCee-EEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc-ccCCCCCEE
Confidence            45788888888776655433322 3333 33457889987432      235999999998776666431 12222   4


Q ss_pred             EEEEE--CCEEEEEeCCC--CceEEEeccCCCceEEEeccccc
Q psy8875         683 SISTF--EDWLYWSDWQQ--KAIYKANKFTGDNLTAITGVHQT  721 (734)
Q Consensus       683 gl~v~--~~~lywtd~~~--~~v~~~~~~~G~~~~~l~~~~~l  721 (734)
                      .+++.  +.++..+-.+.  -.+..++..+|+.+.+|..+..|
T Consensus       420 s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~n~~l  462 (470)
T d2bgra1         420 SVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLEDNSAL  462 (470)
T ss_dssp             EEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEECCHHH
T ss_pred             EEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEeccHHH
Confidence            56663  34333333332  23555667789888888765444

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.05  E-value=1.4  Score=41.28  Aligned_cols=222  Identities=11%  Similarity=0.016  Sum_probs=116.6

Q ss_pred             cceEEeecCCCceEEEec--CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCc--eEEEEeCCCCCccceeeeccC
Q psy8875         483 HDIRKISLDHHEMTAIVN--STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSE--RTVVIEEDKTIADGLAVDWIY  558 (734)
Q Consensus       483 ~~I~~i~l~~~~~~~l~~--~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~--~~~~~~~~~~~p~glAvD~~~  558 (734)
                      ..|+.-++..........  ....+.+++|.+. +.++.+. ..+.|....+.....  ...+.......+..+++.+.+
T Consensus        34 g~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~-~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g  111 (299)
T d1nr0a2          34 GHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS-WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADG  111 (299)
T ss_dssp             SCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEE-TTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTS
T ss_pred             CeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeeccc-ceeeEEEeccCCcccccccccccccccccccccccccc
Confidence            345555555433333322  2345678888864 4555443 456677666553211  111111223456778887665


Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEE-EEEcCCCCce
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNM-VIVSDIKWPN  637 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~-lv~~~l~~P~  637 (734)
                      ..+..+..  +.|.+.+.. .....   .....+..+++.|...+|+...  ..+.|...++.+..... .....-....
T Consensus       112 ~~~~~~~~--~~i~~~~~~-~~~~~---~~~~~~~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~  183 (299)
T d1nr0a2         112 DIAVAACY--KHIAIYSHG-KLTEV---PISYNSSCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEIT  183 (299)
T ss_dssp             SCEEEEES--SEEEEEETT-EEEEE---ECSSCEEEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEE
T ss_pred             cccccccc--ccccccccc-ccccc---cccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            55555543  456555532 11111   1234567889988766666554  34677777776544322 2223334568


Q ss_pred             eEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcC-CCCCCCCeEEEEE-CCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         638 GLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYS-PQTLSHPFSISTF-EDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       638 glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~-~~~~~~P~gl~v~-~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      .|++++.+..|+.+. ..+.|...++........... ........+|++. .+.++++-...+.|+..+..+++...++
T Consensus       184 ~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         184 SVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             EEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEE
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEE
Confidence            899987777776655 456788877654433222111 1111223567763 4444444444466766666666554443

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.008  Score=37.26  Aligned_cols=32  Identities=41%  Similarity=1.029  Sum_probs=26.7

Q ss_pred             cCcCCCCCccc-ceeccCCceEEecCCCeeeCC
Q psy8875         431 DECETPGSCSQ-ICLNEKGGFKCECVAGYIKDP  462 (734)
Q Consensus       431 ~eC~~~~~C~~-~C~n~~g~~~C~C~~gy~~~~  462 (734)
                      |||+...+|.. +|+|..|+|.|.|.+||.-.+
T Consensus         2 dECsignpCGnGTCtNviGgFec~C~~GFepgp   34 (39)
T d1emoa2           2 DECSVGNPCGNGTCKNVIGGFECTCEEGFEPGP   34 (39)
T ss_dssp             CGGGTTCSSSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             CccccCCccCCceeeecccceEEeecCCcCCCc
Confidence            67877777865 899999999999999997544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.98  E-value=1.8  Score=42.14  Aligned_cols=159  Identities=9%  Similarity=0.042  Sum_probs=90.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe-----------------CCCCCccceeeeccCCcEEEE
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE-----------------EDKTIADGLAVDWIYSHIYWT  564 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~-----------------~~~~~p~glAvD~~~~~lY~t  564 (734)
                      ...+.+|+|++....| .+- ..+.|...++..+.....+..                 .....+..|++.+. +++.++
T Consensus        62 ~~~V~~l~fs~dg~~l-asg-~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s  138 (388)
T d1erja_          62 TSVVCCVKFSNDGEYL-ATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLAT  138 (388)
T ss_dssp             SSCCCEEEECTTSSEE-EEE-CBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEE
T ss_pred             CCcEEEEEECCCCCEE-EEE-eCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCccee
Confidence            3456788888754433 333 466777777664433222110                 01122456777754 445555


Q ss_pred             eCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecC
Q psy8875         565 DAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLV  644 (734)
Q Consensus       565 d~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~  644 (734)
                      -...+.|.+.+...................+++.+....++.+..  .+.|...++......... ........+++.+.
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~  215 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG--DRTVRIWDLRTGQCSLTL-SIEDGVTTVAVSPG  215 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEE-ECSSCEEEEEECST
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc--ceeeeeeecccccccccc-ccccccccccccCC
Confidence            555678888887766555555455566778888887777776663  356666666654433322 22333445555555


Q ss_pred             CCeEEEEeCCCCeEEEEecCCC
Q psy8875         645 QRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       645 ~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      .+.++.+-...+.|...++...
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~  237 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETG  237 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTC
T ss_pred             CCCeEEEEcCCCeEEEeecccC
Confidence            5555555555567777776543

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0054  Score=42.17  Aligned_cols=35  Identities=26%  Similarity=0.630  Sum_probs=25.3

Q ss_pred             ccccccCCCCCcCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         389 VDECAKDNGGCLHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      +|+|..++..- ..|++..++|+|.|++||    .|+.|+
T Consensus         8 ~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~----~G~~Ce   42 (48)
T d1autl1           8 EHPCASLCCGH-GTCIDGIGSFSCDCRSGW----EGRFCQ   42 (48)
T ss_dssp             CCSSSSTTTTS-EEECCCSSCCCEEECTTE----ESTTSC
T ss_pred             CCcccCCCCCC-CEEECCCCCCeEeCCCCC----cCCCcc
Confidence            34565543332 379999999999999999    577774

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0038  Score=41.00  Aligned_cols=25  Identities=28%  Similarity=0.820  Sum_probs=20.2

Q ss_pred             cCccccCCCcceeecCCCcEecCCCCccc
Q psy8875         400 LHKCVDLPVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       400 ~~~C~~~~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ...|++..++|+|.|++||    .|+.|+
T Consensus        12 gg~C~~~~~~~~C~C~~g~----~G~~Ce   36 (39)
T d1g1ta2          12 HGECVETINNYTCKCDPGF----SGLKCE   36 (39)
T ss_dssp             SEEEEEETTEEEEEECTTE----ESTTSC
T ss_pred             CcEEECCCCCEEEeCCCCC----cCcCcC
Confidence            3478899999999999999    566664

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.11  E-value=2.4  Score=39.89  Aligned_cols=135  Identities=9%  Similarity=-0.028  Sum_probs=78.4

Q ss_pred             cCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEc--CCCC
Q psy8875         513 RTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVR--SYLD  590 (734)
Q Consensus       513 ~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~--~~l~  590 (734)
                      ....++.+-...+.|+..++..+..... +......+..|++.+.+ .++++-...+.|.+.++........+.  ....
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~-~~~h~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~  271 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNG-NAFATGSDDATCRLFDLRADQELMTYSHDNIIC  271 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEE-ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEE-EeCCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeecccccccccccccccC
Confidence            3555666666677777777764433222 23233456788888654 455555557889999887665544432  2234


Q ss_pred             CceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeEEEecCCCeEEEE
Q psy8875         591 EPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWV  651 (734)
Q Consensus       591 ~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~  651 (734)
                      ....++++|...+|+...  ..+.|...++........+........+|++.+.+..|+-+
T Consensus       272 ~i~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         272 GITSVSFSKSGRLLLAGY--DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             CEEEEEECSSSCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             ceEEEEECCCCCEEEEEE--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence            457889988666665544  24667776665433333333333445677877555555433

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=93.94  E-value=0.27  Score=49.85  Aligned_cols=147  Identities=8%  Similarity=-0.006  Sum_probs=86.0

Q ss_pred             cCCcEEEEeCCCCeEEEEeCCCCceEEEE-cCCCCCceeEEEeCCCCeEEEEecCCC------------------ceEEE
Q psy8875         557 IYSHIYWTDAHKNTIELANFEGTMRKVLV-RSYLDEPRSLALNPIDGWMYWSDWGQN------------------AKIER  617 (734)
Q Consensus       557 ~~~~lY~td~~~~~I~~~~ldG~~~~~l~-~~~l~~P~~iavD~~~g~LYwtd~~~~------------------~~I~~  617 (734)
                      .++.||+.|..+.||.|++++......++ ......|.|+.+.+..+..|+...++.                  +.+..
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~  177 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  177 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence            36789999999999999999987654444 356778889888554455555542210                  11233


Q ss_pred             eccCCCceEEEEEcC-CCCceeEEEecCCCeEEEEeCCCC--------------eEEEEec--------CCC----ceEE
Q psy8875         618 AGMDGSHRNMVIVSD-IKWPNGLTLDLVQRRLYWVDAKLN--------------EISSCDY--------NGG----NRRL  670 (734)
Q Consensus       618 ~~ldG~~~~~lv~~~-l~~P~glavD~~~~~LYw~D~~~~--------------~I~~~~~--------dG~----~~~~  670 (734)
                      ++.+  ..++...-. -..|.++++++.++.+|++...+.              .|..++.        +|.    +...
T Consensus       178 ID~~--tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         178 VDAD--KWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EETT--TTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EecC--CceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            3333  333221111 135779999999999999864321              1222221        011    0000


Q ss_pred             EEcCC-----------CCCCCCeEEEE--ECCEEEEEeCCCCceEEEe
Q psy8875         671 VLYSP-----------QTLSHPFSIST--FEDWLYWSDWQQKAIYKAN  705 (734)
Q Consensus       671 i~~~~-----------~~~~~P~gl~v--~~~~lywtd~~~~~v~~~~  705 (734)
                      ++...           .....|.|+.+  ++.+||++.-....|-.++
T Consensus       256 VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD  303 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLD  303 (459)
T ss_dssp             EEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred             eecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEE
Confidence            11100           11256888888  6789999988777776665

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=93.80  E-value=1.6  Score=44.08  Aligned_cols=162  Identities=11%  Similarity=0.049  Sum_probs=89.3

Q ss_pred             CcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC------CCCCccceeeeccC-CcEEEEeCC-----CC
Q psy8875         502 TKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE------DKTIADGLAVDWIY-SHIYWTDAH-----KN  569 (734)
Q Consensus       502 ~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~------~~~~p~glAvD~~~-~~lY~td~~-----~~  569 (734)
                      ...+.+|+++|....+.++-...+.|+|.. ++|..-+.+...      ......+||||+.+ +.||+.-..     ..
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~-dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~   89 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   89 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEE-CCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCc
Confidence            456788999987665555555556788765 545433322211      11234579999876 456655321     24


Q ss_pred             eEEEEeCCCCceEEEEcC--------CCCCceeEEEeCCCC-eEEEEecCCCceEEEeccCCCceEEEEEc--C---CCC
Q psy8875         570 TIELANFEGTMRKVLVRS--------YLDEPRSLALNPIDG-WMYWSDWGQNAKIERAGMDGSHRNMVIVS--D---IKW  635 (734)
Q Consensus       570 ~I~~~~ldG~~~~~l~~~--------~l~~P~~iavD~~~g-~LYwtd~~~~~~I~~~~ldG~~~~~lv~~--~---l~~  635 (734)
                      .|++..=.|+.-+.+...        .......|+|||.+. .||+..  ....|++..-.|..-+.+...  .   ...
T Consensus        90 gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~--~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~  167 (427)
T d2ebsa1          90 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT--RTEGIWKSSDRAKTWTNVTSIPDAFTNGIG  167 (427)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC--SSSCEEEESSTTSSCEECTTSSCCCCSSSC
T ss_pred             cEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc--cccceeeecCCCceeeecccCcccccCCcc
Confidence            566655445544443321        112335699999865 466553  235688766555443332111  1   112


Q ss_pred             ceeEEEecC-CCeEEEEeCCCCeEEEEecCCC
Q psy8875         636 PNGLTLDLV-QRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       636 P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ...|++|+. .+.||.+......|++..=.|.
T Consensus       168 ~~~i~~~p~~~~~~y~~~~~~~giy~S~DgG~  199 (427)
T d2ebsa1         168 YTSVIFDPERNGTIYASATAPQGMYVTHDGGV  199 (427)
T ss_dssp             EEEEEECTTSTTCEEEEESSTTCEEEESSTTS
T ss_pred             ceEEEecccccceeeeeeeecccceeccCCCC
Confidence            345788876 4578877766667876543333

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=93.60  E-value=0.016  Score=38.60  Aligned_cols=36  Identities=28%  Similarity=0.651  Sum_probs=25.4

Q ss_pred             ccccccCCCCCcCccccC-CCcceeecCC-CcEecCCCCccc
Q psy8875         389 VDECAKDNGGCLHKCVDL-PVGYMCECNE-GYKLSSNRHTCI  428 (734)
Q Consensus       389 ~~eC~~~~~~C~~~C~~~-~~~~~C~C~~-G~~l~~~~~~C~  428 (734)
                      +|+|..++..-...|++. .++|+|.|+. ||    .|++|+
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~----~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGY----SGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSE----ETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCc----CCcCcC
Confidence            456666554445688875 6889999986 89    566775

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=93.23  E-value=0.011  Score=39.46  Aligned_cols=34  Identities=15%  Similarity=0.235  Sum_probs=26.8

Q ss_pred             CC-CCcccCCCcccC-CCCCccccCCC-CCccCCCcc
Q psy8875         183 HC-SHLCLPAPQINA-HSPKISCACPE-GLKLLPDLL  216 (734)
Q Consensus       183 ~C-~~~C~~~~~~~~-~~~~~~C~C~~-G~~~~~~~~  216 (734)
                      .| +++|+|+++|.+ ....|+|.|+. ||.|..|+.
T Consensus         4 ~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce~   40 (42)
T d1q4ga2           4 PCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTI   40 (42)
T ss_dssp             GGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTCE
T ss_pred             cCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcCc
Confidence            45 578999999975 45789999986 999987664

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.024  Score=35.05  Aligned_cols=30  Identities=33%  Similarity=0.912  Sum_probs=23.2

Q ss_pred             cccccCCCCCcC-ccccCCCcceeecCCCcEe
Q psy8875         390 DECAKDNGGCLH-KCVDLPVGYMCECNEGYKL  420 (734)
Q Consensus       390 ~eC~~~~~~C~~-~C~~~~~~~~C~C~~G~~l  420 (734)
                      |||... ..|.+ .|.|..++|+|.|.+||..
T Consensus         2 dECsig-npCGnGTCtNviGgFec~C~~GFep   32 (39)
T d1emoa2           2 DECSVG-NPCGNGTCKNVIGGFECTCEEGFEP   32 (39)
T ss_dssp             CGGGTT-CSSSSSCEEECSSSEEECCSSSSCC
T ss_pred             CccccC-CccCCceeeecccceEEeecCCcCC
Confidence            466543 45644 8999999999999999953

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.018  Score=42.16  Aligned_cols=36  Identities=11%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             CCcccCCCccc-----CCCCCccccCCCCCccCCCcccccc
Q psy8875         185 SHLCLPAPQIN-----AHSPKISCACPEGLKLLPDLLMCAE  220 (734)
Q Consensus       185 ~~~C~~~~~~~-----~~~~~~~C~C~~G~~~~~~~~~~~~  220 (734)
                      .++|+|+++|.     +....|.|.|++||.|..|+.....
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce~~~~~   51 (63)
T d1haea_          11 KTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVPM   51 (63)
T ss_dssp             HTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSCEECCS
T ss_pred             CCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcCCCCCc
Confidence            46889988883     4556899999999999998876543

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.69  E-value=0.013  Score=38.73  Aligned_cols=34  Identities=18%  Similarity=0.287  Sum_probs=26.7

Q ss_pred             CC-CCcccCCCcccC-CCCCccccCC-CCCccCCCcc
Q psy8875         183 HC-SHLCLPAPQINA-HSPKISCACP-EGLKLLPDLL  216 (734)
Q Consensus       183 ~C-~~~C~~~~~~~~-~~~~~~C~C~-~G~~~~~~~~  216 (734)
                      .| +.+|+|+++|.+ ....|+|.|+ .||.|..++.
T Consensus         3 ~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce~   39 (41)
T d1cvua2           3 PCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCTT   39 (41)
T ss_dssp             TTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTCE
T ss_pred             cCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcCc
Confidence            45 568999999975 3578999997 5999987764

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=92.04  E-value=1.2  Score=45.24  Aligned_cols=167  Identities=11%  Similarity=0.041  Sum_probs=89.7

Q ss_pred             CCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEEEEcC------CCCCceeEEEeCCCC-eEEEEecC----CCceE
Q psy8875         547 TIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKVLVRS------YLDEPRSLALNPIDG-WMYWSDWG----QNAKI  615 (734)
Q Consensus       547 ~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~l~~~------~l~~P~~iavD~~~g-~LYwtd~~----~~~~I  615 (734)
                      ....+|||||.+.++.++-...+-|++..=.|..-+.+...      ......+|||||.+. .||+....    ....|
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~gi   91 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF   91 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCccE
Confidence            45678999888766555544445677766455554443311      122456899999874 56654321    12467


Q ss_pred             EEeccCCCceEEEEEcC--------CCCceeEEEecCCC-eEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCC---CeE
Q psy8875         616 ERAGMDGSHRNMVIVSD--------IKWPNGLTLDLVQR-RLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSH---PFS  683 (734)
Q Consensus       616 ~~~~ldG~~~~~lv~~~--------l~~P~glavD~~~~-~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~---P~g  683 (734)
                      ++..-.|..-+.+....        ......|+||+.+. .||++ ...+.|++..=.|..-+.+.........   ...
T Consensus        92 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~~  170 (427)
T d2ebsa1          92 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTS  170 (427)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEEESSTTSSCEECTTSSCCCCSSSCEEE
T ss_pred             EEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceeeecCCCceeeecccCcccccCCccceE
Confidence            77654454433332111        12234699998755 45554 4445677644344443333221111111   223


Q ss_pred             EEE---ECCEEEEEeCCCCceEEEeccCCCceEEE
Q psy8875         684 IST---FEDWLYWSDWQQKAIYKANKFTGDNLTAI  715 (734)
Q Consensus       684 l~v---~~~~lywtd~~~~~v~~~~~~~G~~~~~l  715 (734)
                      |++   ..+.||.+......|++-. ..|+.-+.|
T Consensus       171 i~~~p~~~~~~y~~~~~~~giy~S~-DgG~TW~~v  204 (427)
T d2ebsa1         171 VIFDPERNGTIYASATAPQGMYVTH-DGGVSWEPV  204 (427)
T ss_dssp             EEECTTSTTCEEEEESSTTCEEEES-STTSSCEEC
T ss_pred             EEecccccceeeeeeeecccceecc-CCCCCceEC
Confidence            454   3577888877767787653 456655544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.70  E-value=3.9  Score=37.72  Aligned_cols=117  Identities=9%  Similarity=0.036  Sum_probs=57.0

Q ss_pred             eccceEEeecCCCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeC-CCCCccceeeeccCC
Q psy8875         481 RKHDIRKISLDHHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEE-DKTIADGLAVDWIYS  559 (734)
Q Consensus       481 ~~~~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~-~~~~p~glAvD~~~~  559 (734)
                      ....+.....................++  .+..+.+.+.....+.|...++.. ......+.. ....+..|++.+.+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~  175 (287)
T d1pgua2          99 NDDDLLILQSFTGDIIKSVRLNSPGSAV--SLSQNYVAVGLEEGNTIQVFKLSD-LEVSFDLKTPLRAKPSYISISPSET  175 (287)
T ss_dssp             TTSEEEEEETTTCCEEEEEECSSCEEEE--EECSSEEEEEETTTSCEEEEETTE-EEEEEECSSCCSSCEEEEEECTTSS
T ss_pred             ecccceeeeccceeeeeeccccceeeee--eccCcceeeeccccceeeeeeccc-cceeeeeeeccCCceeEEEeccCcc
Confidence            3344444444433333322222233334  333556665554445566655542 222222211 223466788887665


Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEE-EEcCCCCCceeEEEeCCC
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKV-LVRSYLDEPRSLALNPID  601 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~-l~~~~l~~P~~iavD~~~  601 (734)
                      .|+... ..+.|.+.++....... ...........|++.|..
T Consensus       176 ~l~~g~-~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~  217 (287)
T d1pgua2         176 YIAAGD-VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE  217 (287)
T ss_dssp             EEEEEE-TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred             cccccc-ccccccceeecccccccccccccccccceeeecccc
Confidence            555554 46788888886544322 122223445677776643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=3.9  Score=41.82  Aligned_cols=140  Identities=6%  Similarity=0.019  Sum_probs=70.3

Q ss_pred             EEEeeeccCCeEEEE--EeCC--CcEEEEecCCCCceEEEEeCCCC----CccceeeeccCCcEEEE---e-CCCCeEEE
Q psy8875         506 TAIDFVFRTGMIFWS--DISE--KKIYKAPIDEGSERTVVIEEDKT----IADGLAVDWIYSHIYWT---D-AHKNTIEL  573 (734)
Q Consensus       506 ~~i~~d~~~~~lyw~--d~~~--~~I~~~~l~~g~~~~~~~~~~~~----~p~glAvD~~~~~lY~t---d-~~~~~I~~  573 (734)
                      ..+.|.+ .+++++.  +...  ..|+.+++..|..++++....-.    ......+.+.++.++|.   + .+.+.++.
T Consensus       258 ~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         258 TMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred             eeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEE
Confidence            4456654 3445443  3222  24667777755544443321111    11234555556665553   1 22345555


Q ss_pred             EeC-------CCCceEEEEcCCCCCcee-EEEeCCCCeEEEEecCC---CceEEEeccCCCceEEEEEcCCC---CceeE
Q psy8875         574 ANF-------EGTMRKVLVRSYLDEPRS-LALNPIDGWMYWSDWGQ---NAKIERAGMDGSHRNMVIVSDIK---WPNGL  639 (734)
Q Consensus       574 ~~l-------dG~~~~~l~~~~l~~P~~-iavD~~~g~LYwtd~~~---~~~I~~~~ldG~~~~~lv~~~l~---~P~gl  639 (734)
                      +.+       .|...+.|..+ .-.... +++|..++.|||+....   ..+|++++++|+..+..+...+.   .-+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~G-~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~  415 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITSG-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSA  415 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCCS-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEE
T ss_pred             EEeccccccCCCceeEEeccC-CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEE
Confidence            543       22222222222 222233 57999999999987542   34799999999866544432221   12355


Q ss_pred             EEecCCCe
Q psy8875         640 TLDLVQRR  647 (734)
Q Consensus       640 avD~~~~~  647 (734)
                      ++++..++
T Consensus       416 ~~S~~~~y  423 (465)
T d1xfda1         416 SFSHSMDF  423 (465)
T ss_dssp             EECTTSSE
T ss_pred             EECCCCCE
Confidence            66544443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.40  E-value=2.5  Score=44.71  Aligned_cols=33  Identities=9%  Similarity=0.116  Sum_probs=24.2

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      |+..++.||..+. .+.++.++..+|+.+-....
T Consensus       471 l~TagglVf~G~~-dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         471 LYTKGGLVWYATL-DGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEETTTEEEEECT-TSEEEEEETTTCCEEEEEEC
T ss_pred             eEecCCEEEEECC-CCeEEEEECCCCcEEEEEEC
Confidence            5556788887655 47788889999988766643

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.21  E-value=0.049  Score=35.89  Aligned_cols=35  Identities=20%  Similarity=0.630  Sum_probs=23.2

Q ss_pred             cccccCCCCCcCccccC-CCcceeecC-CCcEecCCCCccc
Q psy8875         390 DECAKDNGGCLHKCVDL-PVGYMCECN-EGYKLSSNRHTCI  428 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~-~~~~~C~C~-~G~~l~~~~~~C~  428 (734)
                      |+|..++..-...|++. .++|+|.|+ +||    .|+.|+
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy----~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGF----YGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSE----ETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCc----CCcCcC
Confidence            34554443334578875 578999996 699    566774

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.02  E-value=6.2  Score=36.84  Aligned_cols=219  Identities=11%  Similarity=0.041  Sum_probs=98.6

Q ss_pred             cceEEeecCCCce-EEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCcccee-eeccCCc
Q psy8875         483 HDIRKISLDHHEM-TAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLA-VDWIYSH  560 (734)
Q Consensus       483 ~~I~~i~l~~~~~-~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glA-vD~~~~~  560 (734)
                      ..|+.-++..... ..+......+.+|+|.+ .+ ++++-...+.|+..++........ ............ +....+.
T Consensus        33 g~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~-~l~s~s~D~~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  109 (355)
T d1nexb2          33 KMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GG-ILVSGSTDRTVRVWDIKKGCCTHV-FEGHNSTVRCLDIVEYKNIK  109 (355)
T ss_dssp             TEEEEEETTTTEEEEEEECCSSCEEEEEEET-TT-EEEEEETTCCEEEEETTTTEEEEE-ECCCSSCEEEEEEEEETTEE
T ss_pred             CeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CC-EEEEEecccccccccccccccccc-cccccccccccccccccccc
Confidence            4455556654333 33333455678899875 34 455656677787777763322222 211111111111 2222334


Q ss_pred             EEEEeCCCCeEEEEeCCCCceEEEEc----------CCCCCcee-----------EEEeCCCCeEEEEecCCCceEEEec
Q psy8875         561 IYWTDAHKNTIELANFEGTMRKVLVR----------SYLDEPRS-----------LALNPIDGWMYWSDWGQNAKIERAG  619 (734)
Q Consensus       561 lY~td~~~~~I~~~~ldG~~~~~l~~----------~~l~~P~~-----------iavD~~~g~LYwtd~~~~~~I~~~~  619 (734)
                      ..++-...+.|.+.++..........          .....+..           .+..+....++...  ....|...+
T Consensus       110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~d~~i~~~d  187 (355)
T d1nexb2         110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS--YDNTLIVWD  187 (355)
T ss_dssp             EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEE--TTSCEEEEE
T ss_pred             eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeec--ccceeeeee
Confidence            44444455777777765432211110          00011100           11111122233322  124555555


Q ss_pred             cCCCceEEEEEcCCCCceeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCC
Q psy8875         620 MDGSHRNMVIVSDIKWPNGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQK  699 (734)
Q Consensus       620 ldG~~~~~lv~~~l~~P~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~  699 (734)
                      +..................+.+++....++... ..+.|...++........+...  ......|++.++.|+.. ...+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~~~~~l~~~-~~dg  263 (355)
T d1nexb2         188 VAQMKCLYILSGHTDRIYSTIYDHERKRCISAS-MDTTIRIWDLENGELMYTLQGH--TALVGLLRLSDKFLVSA-AADG  263 (355)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTTCCEEEEECCC--SSCCCEEEECSSEEEEE-CTTS
T ss_pred             cccccceeeeeccccccccccccccceeeeccc-ccceEEeeeccccccccccccc--cccccccccccceeeee-eccc
Confidence            543333323333444556777776666665544 4567777776655444444321  22234566655544443 3445


Q ss_pred             ceEEEeccCCC
Q psy8875         700 AIYKANKFTGD  710 (734)
Q Consensus       700 ~v~~~~~~~G~  710 (734)
                      .|...+..++.
T Consensus       264 ~i~iwd~~~~~  274 (355)
T d1nexb2         264 SIRGWDANDYS  274 (355)
T ss_dssp             EEEEEETTTCC
T ss_pred             ccccccccccc
Confidence            66555554443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.61  E-value=6.5  Score=36.33  Aligned_cols=118  Identities=6%  Similarity=-0.001  Sum_probs=61.7

Q ss_pred             CCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCC--
Q psy8875         501 STKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEG--  578 (734)
Q Consensus       501 ~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG--  578 (734)
                      ....+..|+|.+..+.+.++-...+.|...++..+...... .............+....++++-...+.|.+.++..  
T Consensus        55 h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL-TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEEC-BSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccc-cccccccccccccccccccccccccccccceeeccccc
Confidence            34567889998877777777767788888887744433332 222222233333334555666655567777766532  


Q ss_pred             CceEEEEcC----CCCCceeEEEeCCCCeEEEEecCCCceEEEeccC
Q psy8875         579 TMRKVLVRS----YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMD  621 (734)
Q Consensus       579 ~~~~~l~~~----~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ld  621 (734)
                      .....+...    .......+.+.+....++....  .+.|...++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~  178 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN--NSQVQWFRLP  178 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES--TTEEEEEESS
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecC--CCcEEEEecc
Confidence            111111111    1122334455555555555442  3455555554

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.54  E-value=0.066  Score=37.46  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=25.1

Q ss_pred             CCcccCCCccc--CCCCCccccCCCCCccCCCcc
Q psy8875         185 SHLCLPAPQIN--AHSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       185 ~~~C~~~~~~~--~~~~~~~C~C~~G~~~~~~~~  216 (734)
                      +++|+|+++|.  .....+.|.|++||.|..|+.
T Consensus        11 ~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce~   44 (53)
T d3egfa_          11 DGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT   44 (53)
T ss_dssp             SCCSCSSCEEEEESSSSCEEEECCTTCCSSSSCC
T ss_pred             CCCCCCCcEeeccCCCCCeEeECCCCCcCCCCcc
Confidence            45788888885  444679999999999987764

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.86  E-value=0.079  Score=34.82  Aligned_cols=24  Identities=25%  Similarity=0.821  Sum_probs=18.4

Q ss_pred             CccccC--CCcceeecCCCcEecCCCCccc
Q psy8875         401 HKCVDL--PVGYMCECNEGYKLSSNRHTCI  428 (734)
Q Consensus       401 ~~C~~~--~~~~~C~C~~G~~l~~~~~~C~  428 (734)
                      ..|++.  ..+|+|.|++||    .|..|+
T Consensus        10 G~C~~~~~~~~y~C~C~~g~----~G~~Ce   35 (41)
T d1tpga1          10 GTCQQALYFSDFVCQCPEGF----AGKSCE   35 (41)
T ss_dssp             CEEEEESSSSCEEEECCTTC----BSSSCC
T ss_pred             CEEecCCCCCCeEECCCCCC----CCCCcC
Confidence            467764  467999999999    677785

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.48  E-value=4.7  Score=42.54  Aligned_cols=34  Identities=9%  Similarity=0.033  Sum_probs=24.9

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEecc
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITGV  718 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~~  718 (734)
                      |+..++.||..+. .+.++.++..||+.+-.....
T Consensus       493 lstagglVF~Gt~-dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         493 LATAGNLVFTGTG-DGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEETTTEEEEECT-TSEEEEEETTTCCEEEEEECS
T ss_pred             eEEcCCeEEEeCC-CCeEEEEECCCCcEeEEEECC
Confidence            5667777877654 478889999999988766543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.46  E-value=7.7  Score=35.49  Aligned_cols=153  Identities=11%  Similarity=0.033  Sum_probs=77.1

Q ss_pred             ceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceEE
Q psy8875         504 SATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRKV  583 (734)
Q Consensus       504 ~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~~  583 (734)
                      .|..+++.+ .+.++.+ ...+.|+......+.....+ .  . .....++.+....+.++-...+.|.+.++.......
T Consensus        82 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~--~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~  155 (287)
T d1pgua2          82 QPKVASANN-DGFTAVL-TNDDDLLILQSFTGDIIKSV-R--L-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF  155 (287)
T ss_dssp             CEEEEEECS-SSEEEEE-ETTSEEEEEETTTCCEEEEE-E--C-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEE
T ss_pred             ceeeeeecc-CCceEEE-eecccceeeeccceeeeeec-c--c-cceeeeeeccCcceeeeccccceeeeeeccccceee
Confidence            345555553 3333333 34455666555533322222 2  1 223455655566677666656678888876544433


Q ss_pred             EEcC-CCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEE-EEcCCCCceeEEEecC---------CCeEEEEe
Q psy8875         584 LVRS-YLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMV-IVSDIKWPNGLTLDLV---------QRRLYWVD  652 (734)
Q Consensus       584 l~~~-~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~l-v~~~l~~P~glavD~~---------~~~LYw~D  652 (734)
                      .+.. ....+..|+++|...+|+....  .+.|...++........ ........+.|++.+.         .+.++.+-
T Consensus       156 ~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg  233 (287)
T d1pgua2         156 DLKTPLRAKPSYISISPSETYIAAGDV--MGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG  233 (287)
T ss_dssp             ECSSCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred             eeeeccCCceeEEEeccCccccccccc--cccccceeecccccccccccccccccceeeecccccccccccCCCCeeEee
Confidence            3322 2345788999987777776653  35666666543322111 1111222345555432         23344444


Q ss_pred             CCCCeEEEEecC
Q psy8875         653 AKLNEISSCDYN  664 (734)
Q Consensus       653 ~~~~~I~~~~~d  664 (734)
                      +..+.|...++.
T Consensus       234 s~D~~i~iw~~~  245 (287)
T d1pgua2         234 SLDTNIFIYSVK  245 (287)
T ss_dssp             ETTSCEEEEESS
T ss_pred             cCCCeEEEEECC
Confidence            445566666654

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.71  E-value=0.065  Score=39.03  Aligned_cols=22  Identities=27%  Similarity=0.964  Sum_probs=17.3

Q ss_pred             ccCCCcceeecCCCcEecCCCCcccc
Q psy8875         404 VDLPVGYMCECNEGYKLSSNRHTCID  429 (734)
Q Consensus       404 ~~~~~~~~C~C~~G~~l~~~~~~C~~  429 (734)
                      .+.+++|.|.|++||    .|+.|+.
T Consensus        26 ~~~~~~y~C~C~~gy----~G~~Ce~   47 (63)
T d1haea_          26 LSNPSRYLCKCQPGF----TGARCTE   47 (63)
T ss_dssp             SSSSCCEEEECCTTE----ESTTSCE
T ss_pred             ccCCCCEEeECCCCC----CCCCcCC
Confidence            456788999999999    5777763

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.50  E-value=11  Score=34.68  Aligned_cols=159  Identities=9%  Similarity=-0.041  Sum_probs=80.0

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEe--CCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCc
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIE--EDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTM  580 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~--~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~  580 (734)
                      ..+.+|+|.+..+.|..+ ...+.|+..+++.+.....+..  .....+..|++.+..+.+.++-...+.|.+.++....
T Consensus        12 d~I~~l~fsp~~~~L~s~-s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~   90 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP   90 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS
T ss_pred             CCEEEEEEeCCCCEEEEE-ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc
Confidence            357899999876655544 4567777777664443222221  1223456777766666677776667888888887665


Q ss_pred             eEEEEcCCCCCceeEE-EeCCCCeEEEEecCCCceEEEeccC--CCceEEEEEcC----CCCceeEEEecCCCeEEEEeC
Q psy8875         581 RKVLVRSYLDEPRSLA-LNPIDGWMYWSDWGQNAKIERAGMD--GSHRNMVIVSD----IKWPNGLTLDLVQRRLYWVDA  653 (734)
Q Consensus       581 ~~~l~~~~l~~P~~ia-vD~~~g~LYwtd~~~~~~I~~~~ld--G~~~~~lv~~~----l~~P~glavD~~~~~LYw~D~  653 (734)
                      ................ ..+....+.....  ...|...++.  ......+....    ......+.+......++... 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  167 (342)
T d1yfqa_          91 SFQALTNNEANLGICRICKYGDDKLIAASW--DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM-  167 (342)
T ss_dssp             SEEECBSCCCCSCEEEEEEETTTEEEEEET--TSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE-
T ss_pred             cccccccccccccccccccccccccccccc--ccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec-
Confidence            5444433332222222 2223333333332  2344433331  22222222111    11223445554455554443 


Q ss_pred             CCCeEEEEecCC
Q psy8875         654 KLNEISSCDYNG  665 (734)
Q Consensus       654 ~~~~I~~~~~dG  665 (734)
                      ..+.|...++..
T Consensus       168 ~d~~i~~~~~~~  179 (342)
T d1yfqa_         168 NNSQVQWFRLPL  179 (342)
T ss_dssp             STTEEEEEESSC
T ss_pred             CCCcEEEEeccc
Confidence            346677766654

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.086  Score=35.97  Aligned_cols=32  Identities=19%  Similarity=0.160  Sum_probs=24.9

Q ss_pred             CCcccCCCcccC--CCCCccccCCCCCccCCCcc
Q psy8875         185 SHLCLPAPQINA--HSPKISCACPEGLKLLPDLL  216 (734)
Q Consensus       185 ~~~C~~~~~~~~--~~~~~~C~C~~G~~~~~~~~  216 (734)
                      .++|+|+++|..  ..+.+.|.|+.||.|..|+.
T Consensus         9 ~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce~   42 (48)
T d1nqlb_           9 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQY   42 (48)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSCE
T ss_pred             CCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCCc
Confidence            457888888853  34578999999999987764

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.42  E-value=10  Score=39.94  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=21.2

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      |+..++.||... ..+.++.++..||+.+-...
T Consensus       480 lsTagglVF~G~-~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         480 MATAGDLVFYGT-LDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEETTTEEEEEC-TTSEEEEEETTTCCEEEEEE
T ss_pred             eEecCCEEEEEC-CCCeEEEEECCCCcEeeEEE
Confidence            344566666554 44778888888888776553

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=0.28  Score=31.28  Aligned_cols=32  Identities=31%  Similarity=0.857  Sum_probs=23.6

Q ss_pred             cccccCCCCCcCccccC-CCcceeecCCCcEecCC
Q psy8875         390 DECAKDNGGCLHKCVDL-PVGYMCECNEGYKLSSN  423 (734)
Q Consensus       390 ~eC~~~~~~C~~~C~~~-~~~~~C~C~~G~~l~~~  423 (734)
                      |.|..  ..|.+.|... +++|+|.|.+||.-.++
T Consensus         5 DPCf~--~~CE~qCqP~~~~~Y~CiCaeGFaP~p~   37 (43)
T d1dx5i1           5 DPCFR--ANCEYQCQPLDQTSYLCVCAEGFAPIPH   37 (43)
T ss_dssp             CGGGG--CCCSSEEEECSSSCEEEECCTTEEEETT
T ss_pred             ccccC--CCcceeeeeCCCCcceEEeccccccCCC
Confidence            44543  3578888886 56899999999986644

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.24  E-value=18  Score=35.97  Aligned_cols=228  Identities=8%  Similarity=0.069  Sum_probs=109.4

Q ss_pred             ceEEeecCCCceEEE-ecCCcceEEEeeeccCCeEEEEEeC---------------CCcEEEEecCCCCceEEEEeCCCC
Q psy8875         484 DIRKISLDHHEMTAI-VNSTKSATAIDFVFRTGMIFWSDIS---------------EKKIYKAPIDEGSERTVVIEEDKT  547 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l-~~~~~~~~~i~~d~~~~~lyw~d~~---------------~~~I~~~~l~~g~~~~~~~~~~~~  547 (734)
                      .|+.+++........ +... ...+++|......||++...               ..+|++-.+.......+++-....
T Consensus       152 ~l~v~Dl~tg~~~~~~i~~~-~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d  230 (430)
T d1qfma1         152 TIKFMKVDGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD  230 (430)
T ss_dssp             EEEEEETTTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred             eeEEeccCcceecccccccc-cccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcccccccccccc
Confidence            466677776554321 2211 12457787778888887532               125666666543332223322222


Q ss_pred             Ccc---ceeeeccCCcEEEEeC-C---CCeEEEEeCCCCc--------eEEEEcCCCCCceeEEEeCCCCeEEE-EecC-
Q psy8875         548 IAD---GLAVDWIYSHIYWTDA-H---KNTIELANFEGTM--------RKVLVRSYLDEPRSLALNPIDGWMYW-SDWG-  610 (734)
Q Consensus       548 ~p~---glAvD~~~~~lY~td~-~---~~~I~~~~ldG~~--------~~~l~~~~l~~P~~iavD~~~g~LYw-td~~-  610 (734)
                      .+.   ++.+...++.|++.-. .   ...++.+++....        ...++. ........ ++...+.+|+ |+.+ 
T Consensus       231 ~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~Tn~~a  308 (430)
T d1qfma1         231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-NFEGEYDY-VTNEGTVFTFKTNRHS  308 (430)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-SSSSCEEE-EEEETTEEEEEECTTC
T ss_pred             CCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec-ccccceEE-EecCCceeecccCccc
Confidence            332   3334434445544322 1   2345555543211        112221 11111122 3323455555 4433 


Q ss_pred             CCceEEEeccCCCc---eEEEEEcCCCCceeEEEecCCCeEEEE--eCCCCeEEEEecCCCceEEEEcCCCCCCCCeEEE
Q psy8875         611 QNAKIERAGMDGSH---RNMVIVSDIKWPNGLTLDLVQRRLYWV--DAKLNEISSCDYNGGNRRLVLYSPQTLSHPFSIS  685 (734)
Q Consensus       611 ~~~~I~~~~ldG~~---~~~lv~~~l~~P~glavD~~~~~LYw~--D~~~~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~  685 (734)
                      .+.+|.+++++...   .++++...-..-..-.+...++.|++.  +....+|..++++|.....+...+  ...-.++.
T Consensus       309 ~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~  386 (430)
T d1qfma1         309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYS  386 (430)
T ss_dssp             TTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEE
T ss_pred             ccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCC--CceEeecc
Confidence            34788888876432   244553221111111233357777776  445568999999888776664321  11112222


Q ss_pred             E--ECCEEEEE--eCC-CCceEEEeccCCCce-EEEe
Q psy8875         686 T--FEDWLYWS--DWQ-QKAIYKANKFTGDNL-TAIT  716 (734)
Q Consensus       686 v--~~~~lywt--d~~-~~~v~~~~~~~G~~~-~~l~  716 (734)
                      .  ..+.|+++  .+. -.+|+.++..+|+.. +++.
T Consensus       387 ~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k  423 (430)
T d1qfma1         387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFR  423 (430)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEE
T ss_pred             CCCCCCEEEEEEcCCCCCCeEEEEECCCCCcceeeEe
Confidence            2  23456553  322 257888888888654 4444

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=85.69  E-value=8.6  Score=40.17  Aligned_cols=164  Identities=13%  Similarity=0.126  Sum_probs=81.0

Q ss_pred             cceeeeccCCcEEEEeCC-----------C-CeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCC-CceEE
Q psy8875         550 DGLAVDWIYSHIYWTDAH-----------K-NTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQ-NAKIE  616 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~-----------~-~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~-~~~I~  616 (734)
                      .-||||..++.+-|.-..           . ..+.....+|+.+.+++.. -+.-.-.++|..+|.+.|...-. .....
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~-~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA-PKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC-CTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeec-CccceEEEEecCCCccccccccccccccc
Confidence            347777777777776322           0 1122334456555555432 23334566777777777765321 11111


Q ss_pred             EeccC-----------CCceEEEEE----cCCCCceeEEEecCCCeEEEEeCCC--------------------------
Q psy8875         617 RAGMD-----------GSHRNMVIV----SDIKWPNGLTLDLVQRRLYWVDAKL--------------------------  655 (734)
Q Consensus       617 ~~~ld-----------G~~~~~lv~----~~l~~P~glavD~~~~~LYw~D~~~--------------------------  655 (734)
                      ..++.           .....+++.    ....| .+.++|+..+.+|+.-...                          
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w-~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW-HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA  428 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS-SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred             ccChhhccccccccccccccceeeeecccccccc-ccccccCCCCeeecccccccceeeccccccccccccccccCcccc
Confidence            11111           111111111    11122 3688999999999864221                          


Q ss_pred             ---------CeEEEEecCCCceEEEEcCCCCCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         656 ---------NEISSCDYNGGNRRLVLYSPQTLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       656 ---------~~I~~~~~dG~~~~~i~~~~~~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                               +.|..+|+......--+...... .--.|+..++.||..+. .+.|+.++..||+.+-....
T Consensus       429 ~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~-~gg~l~TagglVF~G~~-dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPTHW-NGGTLSTAGNLVFQGTA-AGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CCCCGGGCEEEEEEEETTTTEEEEEEEESSSC-CCCEEEETTTEEEEECT-TSEEEEEETTTCCEEEEEEC
T ss_pred             cCCCCcccccceEEEeCCCCeEeeeccCCCCC-CCceeEECCCEEEEECC-CCcEEEEECCCCcEeEEEEC
Confidence                     23455554433322111111000 11135566777776554 57788888888888766543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.51  E-value=12  Score=33.43  Aligned_cols=58  Identities=12%  Similarity=0.128  Sum_probs=36.1

Q ss_pred             ccceEEeecC--CCceEEEecCCcceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEE
Q psy8875         482 KHDIRKISLD--HHEMTAIVNSTKSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVV  541 (734)
Q Consensus       482 ~~~I~~i~l~--~~~~~~l~~~~~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~  541 (734)
                      .|.|+..++.  |.+++.-.+...++..+++|  ...+-++........-..+++|..++..
T Consensus        81 ~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~  140 (313)
T d2hu7a1          81 QHALFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELA  140 (313)
T ss_dssp             CEEEEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             eeeEEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeec
Confidence            3567777887  55554333333467788887  6667777666666666666766555443

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.93  E-value=14  Score=32.90  Aligned_cols=97  Identities=10%  Similarity=0.022  Sum_probs=52.7

Q ss_pred             cceEEEeeeccCCeEEEEEeCCCcEEEEecCCCCceEEEEeCCCCCccceeeeccCCcEEEEeCCCCeEEEEeCCCCceE
Q psy8875         503 KSATAIDFVFRTGMIFWSDISEKKIYKAPIDEGSERTVVIEEDKTIADGLAVDWIYSHIYWTDAHKNTIELANFEGTMRK  582 (734)
Q Consensus       503 ~~~~~i~~d~~~~~lyw~d~~~~~I~~~~l~~g~~~~~~~~~~~~~p~glAvD~~~~~lY~td~~~~~I~~~~ldG~~~~  582 (734)
                      ..+..+++|   +.+.++-..++.|...++..+....++ ..-...+..|+  |. +++.++-...+.|.+.++......
T Consensus        16 ~~V~c~~~d---~~~l~sgs~Dg~i~vWd~~~~~~~~~l-~~H~~~V~~v~--~~-~~~l~s~s~D~~i~~~~~~~~~~~   88 (293)
T d1p22a2          16 KGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQ--YD-ERVIITGSSDSTVRVWDVNTGEML   88 (293)
T ss_dssp             CCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEE-CCCSSCEEEEE--CC-SSEEEEEETTSCEEEEESSSCCEE
T ss_pred             CCEEEEEEc---CCEEEEEeCCCeEEEEECCCCcEEEEE-ecCCCCEeeee--cc-cceeeccccccccccccccccccc
Confidence            345566665   344556566788888888755443333 22223344444  43 455666666788888888766555


Q ss_pred             EEEcCCCCCceeEEEeCCCCeEEEEe
Q psy8875         583 VLVRSYLDEPRSLALNPIDGWMYWSD  608 (734)
Q Consensus       583 ~l~~~~l~~P~~iavD~~~g~LYwtd  608 (734)
                      ......  ........+..+.+....
T Consensus        89 ~~~~~~--~~~~~~~~~~~~~~~~~~  112 (293)
T d1p22a2          89 NTLIHH--CEAVLHLRFNNGMMVTCS  112 (293)
T ss_dssp             EEECCC--CSCEEEEECCTTEEEEEE
T ss_pred             cccccc--ccccccccccccceeecc
Confidence            444322  223334444455555444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.17  E-value=17  Score=37.87  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=24.2

Q ss_pred             EEEECCEEEEEeCCCCceEEEeccCCCceEEEec
Q psy8875         684 ISTFEDWLYWSDWQQKAIYKANKFTGDNLTAITG  717 (734)
Q Consensus       684 l~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~~  717 (734)
                      |+..++.||..+. .+.++.++..||+.+-....
T Consensus       484 lstagglVF~G~~-dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         484 LTTAGNVVFQGTA-DGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEETTTEEEEECT-TSEEEEEETTTCCEEEEEEC
T ss_pred             EEEcCCEEEEECC-CCeEEEEECCCCcEeEEEEC
Confidence            5666777776554 47888999999998766643

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.58  E-value=18  Score=32.34  Aligned_cols=143  Identities=14%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             CcEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCe---EEEEecC---CCceEEEeccC--CCceEEEEE
Q psy8875         559 SHIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGW---MYWSDWG---QNAKIERAGMD--GSHRNMVIV  630 (734)
Q Consensus       559 ~~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~---LYwtd~~---~~~~I~~~~ld--G~~~~~lv~  630 (734)
                      .+|.++....+.|...-++|.....|.    ..|-+...+|..+.   +|.-|..   +.+.|+.+++.  |...++   
T Consensus        26 d~ll~~~~seG~vni~~l~g~~~vkLt----kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i---   98 (313)
T d2hu7a1          26 DKLLVVGFSEGSVNAYLYDGGETVKLN----REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL---   98 (313)
T ss_dssp             TEEEEEEEETTEEEEEEESSSSCEECC----SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC---
T ss_pred             CcEEEEEeccceEEEEEEeCCEEEEEe----cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe---
Confidence            334333333577777778777655443    45777888887653   4555543   34789999998  655431   


Q ss_pred             cCCCCc-eeEEEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-------CCCCCeEEEEEC---CEEEEEeCCCC
Q psy8875         631 SDIKWP-NGLTLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-------TLSHPFSISTFE---DWLYWSDWQQK  699 (734)
Q Consensus       631 ~~l~~P-~glavD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-------~~~~P~gl~v~~---~~lywtd~~~~  699 (734)
                       ....| +=+++-+...++-++-+..++...+-++|...+.+..-+.       ...+-.|+.++.   ..+|.+|..++
T Consensus        99 -~spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG  177 (313)
T d2hu7a1          99 -EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG  177 (313)
T ss_dssp             -TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred             -cCCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccC
Confidence             11111 2233344577888887777888777788888877765321       011223444432   13677777666


Q ss_pred             ceEEEeccCC
Q psy8875         700 AIYKANKFTG  709 (734)
Q Consensus       700 ~v~~~~~~~G  709 (734)
                      .+..+.+-.|
T Consensus       178 ~lri~tpkeG  187 (313)
T d2hu7a1         178 GLRVFDSGEG  187 (313)
T ss_dssp             EEEEECCSSE
T ss_pred             CEEEecCCCC
Confidence            6655544333

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=81.11  E-value=22  Score=34.33  Aligned_cols=178  Identities=11%  Similarity=0.016  Sum_probs=91.1

Q ss_pred             ceEEeecCCCceEEEecCCcceEEEeeeccCC-eEEEEEeC-------CCcEEEEecCCCCceEEEEeC------CCCCc
Q psy8875         484 DIRKISLDHHEMTAIVNSTKSATAIDFVFRTG-MIFWSDIS-------EKKIYKAPIDEGSERTVVIEE------DKTIA  549 (734)
Q Consensus       484 ~I~~i~l~~~~~~~l~~~~~~~~~i~~d~~~~-~lyw~d~~-------~~~I~~~~l~~g~~~~~~~~~------~~~~p  549 (734)
                      ..+.-+|.........+.+....+|||....- .|+.+-..       .++|.. +.|+|..-+.+...      ....+
T Consensus        38 gf~~~dl~~p~~~~~~p~~~~~~~id~a~~~p~~ivr~G~~~~~~~~~~~~~~~-StDgG~TW~~~~~~~~g~~~~~~~~  116 (356)
T d2ebsa2          38 GMKHDDLTKPQKMFGAPQFSNLDSIDAAGNFPNVVVRAGSSGHEYDSACARGAY-ATDGGDAWTIFPTCPPGMNASHYQG  116 (356)
T ss_dssp             CBEESCTTSCCCBCCSSCCSEEEEEEECSSCTTCEEEEEECCCCBTTBCTTEEE-ESSSSSSEEECSCCCTTCSTTCCSC
T ss_pred             ceEEccCCCCcccccCCCcccchheeehhhCCceEEEEeCCCCCCCCCCCcEEE-EecchhcccCCCcCCCCcccccccc
Confidence            34444554433333334566677788765443 33333221       234544 55655443322110      11123


Q ss_pred             cceeeeccCCcEEEEeCC---CCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceE
Q psy8875         550 DGLAVDWIYSHIYWTDAH---KNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRN  626 (734)
Q Consensus       550 ~glAvD~~~~~lY~td~~---~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~  626 (734)
                      ..||+++...+|+|+-..   ...|++..=.|..-..+..........|++|+.+..+|+.-.  ...|++.. ||...-
T Consensus       117 g~ia~s~dg~~ivw~~~~~~~~~gv~~StD~G~TW~~~~~~~~~~~~~i~~d~~~~~~~Ya~~--~g~ly~St-DgG~TW  193 (356)
T d2ebsa2         117 STIAVDASGSQIVWSTKLDEQASGPWYSHDYGKTWSVPAGDLKAQTANVLSDKVQDGTFYATD--GGKFFVST-DGGKSY  193 (356)
T ss_dssp             CEEEECTTSCCEEEECCCTTCCSCCEEESSTTSCCBCCEESCCSCCSCEEECSSSTTCEEEEE--TTEEEEES-STTSEE
T ss_pred             ceEEEecCCCccEEEecccCCCcceEEEcCCCcceEEcCCCCCCCccEEEEeCcCCceEEecc--cceEEEeC-CCcccc
Confidence            348999988999997432   345776655555433222222233357899998877666542  36788776 544333


Q ss_pred             EEEEcCC--CCceeEEEecC-CCeEEEEeCCCCeEEEEecCCC
Q psy8875         627 MVIVSDI--KWPNGLTLDLV-QRRLYWVDAKLNEISSCDYNGG  666 (734)
Q Consensus       627 ~lv~~~l--~~P~glavD~~-~~~LYw~D~~~~~I~~~~~dG~  666 (734)
                      ..+...+  .....+++++. .+.||++-. ...|++..=.|.
T Consensus       194 ~~~~~~~~~~~~~~~~v~p~~~g~v~v~~~-~~Gl~~StDgG~  235 (356)
T d2ebsa2         194 AAKGAGLVTGTSLMPAVNPWVAGDVWVPVP-EGGLFHSTDFGA  235 (356)
T ss_dssp             EECCBTCCCCCCCCCEECTTSTTCEEEEET-TTEEEEESSTTS
T ss_pred             cccccCCccccceeEEEEeccCCceeeccc-ccceEEecCCcc
Confidence            2222222  23344666654 456776643 345666543343

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.68  E-value=21  Score=32.57  Aligned_cols=149  Identities=10%  Similarity=0.034  Sum_probs=73.4

Q ss_pred             cEEEEeCCCCeEEEEeCCCCceEEEEcCCCCCceeEEEeCCCCeEEEEecCCCceEEEeccCCCceEEEEEcCCCCceeE
Q psy8875         560 HIYWTDAHKNTIELANFEGTMRKVLVRSYLDEPRSLALNPIDGWMYWSDWGQNAKIERAGMDGSHRNMVIVSDIKWPNGL  639 (734)
Q Consensus       560 ~lY~td~~~~~I~~~~ldG~~~~~l~~~~l~~P~~iavD~~~g~LYwtd~~~~~~I~~~~ldG~~~~~lv~~~l~~P~gl  639 (734)
                      .++.+....+.|.+.++........+....  ...+.+.+...+|....  ..+.|...++.................++
T Consensus       148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~  223 (342)
T d2ovrb2         148 RRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQFDGIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGM  223 (342)
T ss_dssp             SCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEECSSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEE
T ss_pred             ceeeeecCCCeEEEeecccceeeEEEcCcc--cccccccCCCCEEEEEe--CCCeEEEeecccceeeeEecccccceeEE
Confidence            334444445677777765443333332222  23333333333343333  23566666665443332222222233445


Q ss_pred             EEecCCCeEEEEeCCCCeEEEEecCCCceEEEEcCCC-CCCCCeEEEEECCEEEEEeCCCCceEEEeccCCCceEEEe
Q psy8875         640 TLDLVQRRLYWVDAKLNEISSCDYNGGNRRLVLYSPQ-TLSHPFSISTFEDWLYWSDWQQKAIYKANKFTGDNLTAIT  716 (734)
Q Consensus       640 avD~~~~~LYw~D~~~~~I~~~~~dG~~~~~i~~~~~-~~~~P~gl~v~~~~lywtd~~~~~v~~~~~~~G~~~~~l~  716 (734)
                      ++  ..++|+ +-...+.|...++........+.... .......++...+.| ++-...+.|...+..+|+.+..+.
T Consensus       224 ~~--~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         224 EL--KDNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV-ITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EE--ETTEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEE-EEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ec--CCCEEE-EEcCCCEEEEEecccccccccccccceeeeceeecccCCCee-EEEcCCCEEEEEECCCCCEEEEEe
Confidence            54  355544 44456788888877665544443221 122234444444544 444455777777877887766553

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=0.32  Score=30.24  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=22.6

Q ss_pred             cccCCCcccCC---CCCccccCCCCCccCCCcccc
Q psy8875         187 LCLPAPQINAH---SPKISCACPEGLKLLPDLLMC  218 (734)
Q Consensus       187 ~C~~~~~~~~~---~~~~~C~C~~G~~~~~~~~~~  218 (734)
                      .|+|+++|...   +.-.+|.||.+|.|..|+++-
T Consensus         3 ~ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCEiDt   37 (40)
T d2i9aa1           3 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK   37 (40)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSCEES
T ss_pred             ccccCCEEEEEehhcCCEEecCCcccCceeEEecc
Confidence            36777776532   123479999999999988753