Psyllid ID: psy8894
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | 2.2.26 [Sep-21-2011] | |||||||
| Q94522 | 328 | Succinyl-CoA ligase [ADP/ | yes | N/A | 0.970 | 0.905 | 0.752 | 1e-123 | |
| Q9YGD2 | 306 | Succinyl-CoA ligase subun | N/A | N/A | 0.941 | 0.941 | 0.699 | 1e-117 | |
| P53596 | 322 | Probable succinyl-CoA lig | yes | N/A | 0.950 | 0.903 | 0.663 | 1e-116 | |
| P13086 | 346 | Succinyl-CoA ligase [ADP/ | yes | N/A | 0.941 | 0.832 | 0.726 | 1e-114 | |
| P36967 | 315 | Succinyl-CoA ligase [ADP/ | yes | N/A | 0.931 | 0.904 | 0.696 | 1e-113 | |
| Q9WUM5 | 346 | Succinyl-CoA ligase [ADP/ | yes | N/A | 0.941 | 0.832 | 0.679 | 1e-113 | |
| Q1RH56 | 291 | Succinyl-CoA ligase [ADP- | yes | N/A | 0.888 | 0.934 | 0.687 | 1e-111 | |
| Q4ULQ8 | 292 | Succinyl-CoA ligase [ADP- | yes | N/A | 0.905 | 0.948 | 0.672 | 1e-110 | |
| Q8GTQ9 | 332 | Succinyl-CoA ligase [ADP- | N/A | N/A | 0.934 | 0.861 | 0.664 | 1e-109 | |
| Q92I22 | 292 | Succinyl-CoA ligase [ADP- | yes | N/A | 0.905 | 0.948 | 0.668 | 1e-109 |
| >sp|Q94522|SUCA_DROME Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust.
Identities = 240/319 (75%), Positives = 262/319 (82%), Gaps = 22/319 (6%)
Query: 3 FVA-IRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61
FVA +R NS Y TR NL+L S+VICQGFTGKQGTFHS+QA+EYGTK+VGG+
Sbjct: 15 FVAGVRCNSQ------YNKTRGNLKLNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGI 68
Query: 62 SPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121
SP KGG HL LPVF +V EA+ AT ATVIYVPPPGAA AI EAL+AE+PLIVCITEG
Sbjct: 69 SPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEG 128
Query: 122 IPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLT 181
+PQ DMVKVKH LI QSKSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLT
Sbjct: 129 VPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLT 188
Query: 182 YEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII------------- 228
YEAVHQTT+VGLGQTLCVGIGGDPFNGT+FIDCLEVFLKDPETKGII
Sbjct: 189 YEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKA 248
Query: 229 --LIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT 286
+ E G AKPVVSFIAG++APPGRRMGHAGAIISGGKGGA DKI ALEKAGVIVT
Sbjct: 249 ADYLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVT 308
Query: 287 RSPAQMGNELLKEMKRLNL 305
RSPA+MG+EL KEMKRL L
Sbjct: 309 RSPAKMGHELFKEMKRLEL 327
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Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Drosophila melanogaster (taxid: 7227) EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 5 |
| >sp|Q9YGD2|SUCA_COLLI Succinyl-CoA ligase subunit alpha, mitochondrial (Fragment) OS=Columba livia GN=SUCLG1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/303 (69%), Positives = 255/303 (84%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y+A+R NL ++ +KVICQGFTGKQGTFHS+QA++YGT +VGG+SPGKGGKTHL LPVFN
Sbjct: 3 YSASRKNLYISKNTKVICQGFTGKQGTFHSQQALDYGTNLVGGISPGKGGKTHLGLPVFN 62
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
+VKEA++ TGA ATVIYVPPP AA AI+EA+DAEMPL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 63 SVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQDMVRVKHRLVRQ 122
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RL+GPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQT+QVGLGQ+L
Sbjct: 123 DKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTSQVGLGQSL 182
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPET---------------KGIILIGEIGGGPNAKPV 242
C+GIGGDPFNGTNFIDCL+VFLKDP T + E GPNAKPV
Sbjct: 183 CIGIGGDPFNGTNFIDCLDVFLKDPHTEGIILIGEIGGNAEEDAAAFLKENNSGPNAKPV 242
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G+ + KE ++
Sbjct: 243 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQNAGVVVSMSPAQLGSTIYKEFEK 302
Query: 303 LNL 305
L
Sbjct: 303 RKL 305
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Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Columba livia (taxid: 8932) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|P53596|SUCA_CAEEL Probable succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Caenorhabditis elegans GN=C05G5.4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/309 (66%), Positives = 238/309 (77%), Gaps = 18/309 (5%)
Query: 6 IRNNS---SKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62
I NN+ K A Y +T NL++ +KVI QGFTGKQGTFH KQ +EY TKVVGGV+
Sbjct: 6 IANNARTLQKGAARFYNSTYNNLKINKDTKVIVQGFTGKQGTFHGKQMLEYNTKVVGGVN 65
Query: 63 PGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122
K G HL LPVF V EAR+ TGA+A+VIYVP A AI EA+DAE+PL+VCITEGI
Sbjct: 66 ANKAGTEHLGLPVFKNVSEARNKTGADASVIYVPASAAGSAIEEAMDAEIPLVVCITEGI 125
Query: 123 PQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182
PQ DMV+VK RL++Q+K+RL+GPNCPGII+ +QCKIGIMPGHIH+RGC+G+VSRSGTLTY
Sbjct: 126 PQHDMVRVKSRLLKQNKTRLVGPNCPGIISADQCKIGIMPGHIHKRGCIGIVSRSGTLTY 185
Query: 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK---------------GI 227
EAVHQTTQVG GQTLCVGIGGDPFNGTNFIDCL VFL+DPETK
Sbjct: 186 EAVHQTTQVGFGQTLCVGIGGDPFNGTNFIDCLNVFLEDPETKGIILIGEIGGSAEEEAA 245
Query: 228 ILIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTR 287
+ E G N KPVVSFIAG+TAPPGRRMGHAGAIISGGKG A DKI+AL +AGV+VT
Sbjct: 246 AYLKEHNSGANRKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAADKINALREAGVVVTD 305
Query: 288 SPAQMGNEL 296
SPA++G +
Sbjct: 306 SPAKLGTSM 314
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Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|P13086|SUCA_RAT Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/303 (72%), Positives = 258/303 (85%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R N+ + +KVICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGGK HL LPVFN
Sbjct: 43 YTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKH+L RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPGII P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---------------GPNAKPV 242
C+GIGGDPFNGTNFIDCL+VFLKDP T+GI+LIGEIGG GP AKPV
Sbjct: 223 CIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVIV+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
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Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|P36967|SUCA_DICDI Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3 | Back alignment and function description |
|---|
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/297 (69%), Positives = 245/297 (82%), Gaps = 12/297 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
+ +T+P++ + +KVICQGFTG QGTFHSKQAIEYGT +VGGVSPGKGG+ HLDLPVFN
Sbjct: 15 FFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFN 74
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ATGA ATVIYVPPP AA AI EA+DAEM L+VCITEGIPQ DMVKVK+ L +Q
Sbjct: 75 TVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQ 134
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+K+RLIGPNCPGII P +CKIGIMPGHIH+ G +G+VSRSGTLTYEAV QTT VGLGQ+
Sbjct: 135 NKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQST 194
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIG------------EIGGGPNAKPVVSF 245
C+GIGGDPFNGTNFIDCL++F +DP+T+GIILIG + P KPVVSF
Sbjct: 195 CIGIGGDPFNGTNFIDCLKMFTQDPQTEGIILIGEIGGEAEEEAAQWLIDNPTDKPVVSF 254
Query: 246 IAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
IAG++APPGRRMGHAGAIISGGKG A KI+AL+ AGV VT SPA++G +L++M
Sbjct: 255 IAGLSAPPGRRMGHAGAIISGGKGDANSKIEALKAAGVTVTFSPAKLGETILQKMNE 311
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Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q9WUM5|SUCA_MOUSE Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/303 (67%), Positives = 247/303 (81%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R ++ + +K+ICQGFTGKQGTFHS+QA+EYGTK+VGG +PGKGG+ HL LPVFN
Sbjct: 43 YTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDP---------------ETKGIILIGEIGGGPNAKPV 242
C+GIGGDPFNGT+FIDCLEVFL DP E + E GP AKPV
Sbjct: 223 CIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
Query: 303 LNL 305
+
Sbjct: 343 RKM 345
|
Catalyzes the ATP- or GTP-dependent ligation of succinate and CoA to form succinyl-CoA. The nature of the beta subunit determines the nucleotide specificity. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q1RH56|SUCD_RICBR Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1030), Expect = e-111, Method: Compositional matrix adjust.
Identities = 196/285 (68%), Positives = 238/285 (83%), Gaps = 13/285 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGGKTHLDLP++NTV EA+
Sbjct: 3 ILVNKKTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGKTHLDLPIYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPPP AA +I EA+DA + ++VCITEGIP LDMV+VK L+ S++RLIG
Sbjct: 63 KTGANASVIYVPPPFAADSILEAIDAGIEIVVCITEGIPVLDMVRVKRALV-GSRTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPGII P++CKIGIMPGHIH++G +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGD
Sbjct: 122 PNCPGIITPDECKIGIMPGHIHRKGSIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP--NA----------KPVVSFIAGITAP 252
P NGTNF+DC+++FL+D ETK II+IGEIGG NA KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIDMFLQDDETKAIIMIGEIGGDAEENAADFIKHSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELL 297
PG+RMGHAGAII+GGKG A+DK++AL+ AGV +TRSPA +G +L
Sbjct: 242 PGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTML 286
|
Rickettsia bellii (strain RML369-C) (taxid: 336407) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q4ULQ8|SUCD_RICFE Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/290 (67%), Positives = 234/290 (80%), Gaps = 13/290 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K+KVICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THLDLPV+NTV EA+
Sbjct: 3 ILINKKTKVICQGFTGSQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPP AA +I EA+DAE+ ++VCITEGIP LDMVKVK L+ SK+RLIG
Sbjct: 63 KTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALV-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+RG +G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGTNF+DC+++FLKD ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIDMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
PG+RMGHAGAII+GGKG A+DK++AL+ AGV +TRSPA +G + + +
Sbjct: 242 PGKRMGHAGAIIAGGKGSAEDKLEALQSAGVTITRSPADIGKTMFDLLNK 291
|
Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q8GTQ9|SUCA1_SOLLC Succinyl-CoA ligase [ADP-forming] subunit alpha-1, mitochondrial OS=Solanum lycopersicum GN=SCOA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/298 (66%), Positives = 236/298 (79%), Gaps = 12/298 (4%)
Query: 20 ATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTV 79
A P + + ++VICQG TGK GTFH++QAIEYGTK+VGGV+P KGG HL LPVFNTV
Sbjct: 34 AAPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTV 93
Query: 80 KEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSK 139
+EA+ T A A+VIYVPPP AA AI E L+AE+ LIVCITEGIPQ DMV+VK L +QS+
Sbjct: 94 EEAKAETKANASVIYVPPPFAAAAIMEGLEAELDLIVCITEGIPQHDMVRVKAALKKQSR 153
Query: 140 SRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCV 199
+RLIGPNCPGII P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ CV
Sbjct: 154 TRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCV 213
Query: 200 GIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP------------NAKPVVSFIA 247
GIGGDPFNGTNF+DCLE F+ DP+T+GI+LIGEIGG KPVV+FIA
Sbjct: 214 GIGGDPFNGTNFVDCLEKFIADPQTEGIVLIGEIGGTAEEDAAALIKESGTQKPVVAFIA 273
Query: 248 GITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
G+TAPPGRRMGHAGAI+SGGKG AQDKI AL++AGV V SPA++G +L+ K+ L
Sbjct: 274 GLTAPPGRRMGHAGAIVSGGKGTAQDKIKALKEAGVTVCESPAKIGVSMLEVFKQRGL 331
|
Solanum lycopersicum (taxid: 4081) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
| >sp|Q92I22|SUCD_RICCN Succinyl-CoA ligase [ADP-forming] subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sucD PE=3 SV=1 | Back alignment and function description |
|---|
Score = 394 bits (1013), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/290 (66%), Positives = 233/290 (80%), Gaps = 13/290 (4%)
Query: 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD 84
+ + K++VICQGFTG QGTFHS+QAI YGT +VGGV+PGKGG THLDLPV+NTV EA+
Sbjct: 3 ILINKKTQVICQGFTGLQGTFHSEQAIAYGTNMVGGVTPGKGGHTHLDLPVYNTVHEAKA 62
Query: 85 ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
TGA A+VIYVPP AA +I EA+DAE+ ++VCITEGIP LDMVKVK L+ SK+RLIG
Sbjct: 63 KTGANASVIYVPPGFAADSILEAIDAEIEVVVCITEGIPVLDMVKVKRALV-GSKTRLIG 121
Query: 145 PNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGD 204
PNCPG+I P +CKIGIMPGHIH+RG +G+VSRSGTLTYEAV QTT VGLGQ+ C+GIGGD
Sbjct: 122 PNCPGVITPGECKIGIMPGHIHKRGTIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGD 181
Query: 205 PFNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAP 252
P NGTNF+DC+E+FLKD ETK II+IGEIGG KP+VSFIAGITAP
Sbjct: 182 PVNGTNFVDCIEMFLKDDETKAIIMIGEIGGNAEEDAAEFIKQSKIKKPIVSFIAGITAP 241
Query: 253 PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
PG+RMGHAGAII G G A+DK++AL+ AGVI+TRSPA +G +L + +
Sbjct: 242 PGKRMGHAGAIIVGRTGSAEDKLEALQSAGVIITRSPADIGKTMLDLLNK 291
|
Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944) EC: 6 EC: . EC: 2 EC: . EC: 1 EC: . EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | ||||||
| 332376625 | 328 | unknown [Dendroctonus ponderosae] | 0.941 | 0.878 | 0.841 | 1e-141 | |
| 91076012 | 330 | PREDICTED: similar to succinyl-CoA synth | 0.970 | 0.9 | 0.803 | 1e-139 | |
| 58396343 | 328 | AGAP001312-PA [Anopheles gambiae str. PE | 0.967 | 0.902 | 0.790 | 1e-135 | |
| 251823775 | 330 | succinyl coenzyme A synthetase alpha sub | 0.986 | 0.915 | 0.776 | 1e-134 | |
| 157114411 | 327 | succinyl-CoA synthetase small subunit, p | 0.941 | 0.880 | 0.785 | 1e-133 | |
| 312375154 | 465 | hypothetical protein AND_14503 [Anophele | 0.941 | 0.619 | 0.737 | 1e-133 | |
| 242008595 | 329 | succinyl-CoA ligase subunit alpha , puta | 0.980 | 0.911 | 0.740 | 1e-131 | |
| 170068274 | 304 | succinyl-CoA ligase subunit alpha [Culex | 0.918 | 0.924 | 0.801 | 1e-130 | |
| 124487928 | 286 | putative succinate-CoA ligase, GDP-formi | 0.882 | 0.944 | 0.821 | 1e-129 | |
| 321465554 | 327 | hypothetical protein DAPPUDRAFT_306118 [ | 0.924 | 0.865 | 0.781 | 1e-129 |
| >gi|332376625|gb|AEE63452.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/303 (84%), Positives = 274/303 (90%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y +TR NL+L + SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN
Sbjct: 25 YDSTRWNLKLNANSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 84
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEAR+ATGA+ATVIYVPPPGAA AI+EA+DAE+PLIVCITEGIPQ DMV+VKH+L+RQ
Sbjct: 85 TVKEARNATGADATVIYVPPPGAAAAINEAIDAEVPLIVCITEGIPQHDMVRVKHKLLRQ 144
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
KSRLIGPNCPGIIAPEQCKIGIMPGHIHQ+G VGVVSRSGTLTYEAVHQTTQVGLGQTL
Sbjct: 145 GKSRLIGPNCPGIIAPEQCKIGIMPGHIHQKGIVGVVSRSGTLTYEAVHQTTQVGLGQTL 204
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGII---------------LIGEIGGGPNAKPV 242
CVGIGGDPFNGT+FIDCLEVFLKDPETKGII + + GPNAKPV
Sbjct: 205 CVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEQAADYLNKHNSGPNAKPV 264
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGI+APPGRRMGHAGAIISGGKGGAQDKI+ALEKAGVIVTRSPAQMG ELLKEM+R
Sbjct: 265 VSFIAGISAPPGRRMGHAGAIISGGKGGAQDKINALEKAGVIVTRSPAQMGTELLKEMRR 324
Query: 303 LNL 305
L+L
Sbjct: 325 LSL 327
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91076012|ref|XP_966490.1| PREDICTED: similar to succinyl-CoA synthetase small subunit, putative isoform 1 [Tribolium castaneum] gi|91076014|ref|XP_975865.1| PREDICTED: similar to succinyl-CoA synthetase small subunit, putative isoform 2 [Tribolium castaneum] gi|270014681|gb|EFA11129.1| hypothetical protein TcasGA2_TC004730 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 254/316 (80%), Positives = 277/316 (87%), Gaps = 19/316 (6%)
Query: 9 NSSKVAEEI----YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64
+S KV + I Y ATR NL+LT +KVICQGFTGKQGTFHSKQAIEYGTK+VGGVSPG
Sbjct: 14 DSLKVGQSIRFNSYEATRMNLKLTGNTKVICQGFTGKQGTFHSKQAIEYGTKMVGGVSPG 73
Query: 65 KGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQ 124
KGGKTHLDLPVFN+VKEA+ AT A+A+VIYVPPPGAA AI EA+DAE+PLIVCITEGIPQ
Sbjct: 74 KGGKTHLDLPVFNSVKEAKAATNADASVIYVPPPGAAAAILEAMDAEIPLIVCITEGIPQ 133
Query: 125 LDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEA 184
DMVKVKHRL+RQ+KSRL+GPNCPGIIAPEQCKIGIMPGHIHQ+G VGVVSRSGTLTYEA
Sbjct: 134 QDMVKVKHRLLRQNKSRLVGPNCPGIIAPEQCKIGIMPGHIHQKGVVGVVSRSGTLTYEA 193
Query: 185 VHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII---------------L 229
VHQTTQVGLGQTLCVGIGGDPFNGT+FIDCLEVFLKDPETKGII
Sbjct: 194 VHQTTQVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEQAAEY 253
Query: 230 IGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSP 289
+ + GPNAKPVVSFIAG++APPGRRMGHAGAIISGGKGGAQDKI+ALEKAG IVT+SP
Sbjct: 254 LMQHNTGPNAKPVVSFIAGLSAPPGRRMGHAGAIISGGKGGAQDKINALEKAGAIVTKSP 313
Query: 290 AQMGNELLKEMKRLNL 305
AQMGNELLKEM+RL L
Sbjct: 314 AQMGNELLKEMRRLGL 329
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|58396343|ref|XP_321835.2| AGAP001312-PA [Anopheles gambiae str. PEST] gi|55234034|gb|EAA01194.2| AGAP001312-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/311 (79%), Positives = 269/311 (86%), Gaps = 15/311 (4%)
Query: 10 SSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT 69
S+ V Y ATR NL+L S SKVICQGFTGKQGTFHS+QAIEYGTK+VGGVSPGKGG+T
Sbjct: 17 STSVRFASYEATRKNLKLNSNSKVICQGFTGKQGTFHSQQAIEYGTKLVGGVSPGKGGRT 76
Query: 70 HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVK 129
HLD PVFNTV EA+ ATGAEA+VIYVPPPGAAKAI EA++AEMPLIVCITEG+PQ DMVK
Sbjct: 77 HLDRPVFNTVAEAKKATGAEASVIYVPPPGAAKAIMEAIEAEMPLIVCITEGVPQHDMVK 136
Query: 130 VKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTT 189
VKH L+ Q KSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLTYEAVHQTT
Sbjct: 137 VKHALLAQDKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTT 196
Query: 190 QVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII---------------LIGEIG 234
+VGLGQTLCVGIGGDPFNGT+FIDCLEVFLKDP+TKGII + +
Sbjct: 197 EVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPDTKGIILIGEIGGVAEEKAADYLMQYN 256
Query: 235 GGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGN 294
G AKPVVSFIAG++APPGRRMGHAGAIISGGKGGAQDKI+ALEKAGVIVTRSPAQMG
Sbjct: 257 QGIKAKPVVSFIAGLSAPPGRRMGHAGAIISGGKGGAQDKINALEKAGVIVTRSPAQMGK 316
Query: 295 ELLKEMKRLNL 305
EL+KEMKRL L
Sbjct: 317 ELIKEMKRLEL 327
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|251823775|ref|NP_001156571.1| succinyl coenzyme A synthetase alpha subunit [Acyrthosiphon pisum] gi|239792382|dbj|BAH72542.1| ACYPI009606 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 246/317 (77%), Positives = 270/317 (85%), Gaps = 15/317 (4%)
Query: 1 CQFVAIRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60
C + IR++S+ V IYA TR NL LT +KVICQG TGKQGTFHS QAIEYGT +VGG
Sbjct: 14 CNLMGIRSSSNTVDPRIYAETRKNLLLTKDTKVICQGMTGKQGTFHSTQAIEYGTCMVGG 73
Query: 61 VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120
VSPGKGGKTHL LP+FN+VKEARD TGA+ATVIYVPPPGAAKAI EA+DAE+PLIVCITE
Sbjct: 74 VSPGKGGKTHLGLPIFNSVKEARDETGADATVIYVPPPGAAKAISEAIDAEVPLIVCITE 133
Query: 121 GIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTL 180
GIPQ DMV+VKH+LIRQ+KSRL+GPNCPGIIAPEQCKIGIMPGHIH +G VGVVSRSGTL
Sbjct: 134 GIPQQDMVRVKHKLIRQNKSRLLGPNCPGIIAPEQCKIGIMPGHIHLKGSVGVVSRSGTL 193
Query: 181 TYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII------------ 228
TYEAVHQT+QVGLGQTLCVGIGGDPFNGT+FIDCLEVFL+DP T GII
Sbjct: 194 TYEAVHQTSQVGLGQTLCVGIGGDPFNGTDFIDCLEVFLQDPNTHGIILIGEIGGQQEEM 253
Query: 229 ---LIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIV 285
+ E GPNAKPVVSFIAG+TAPPGRRMGHAGAIISGGKGGAQDKI+ALEKAGV+V
Sbjct: 254 AAEYLIEHNTGPNAKPVVSFIAGLTAPPGRRMGHAGAIISGGKGGAQDKINALEKAGVVV 313
Query: 286 TRSPAQMGNELLKEMKR 302
TRSPA MG EL K MK+
Sbjct: 314 TRSPAAMGIELSKLMKK 330
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157114411|ref|XP_001652258.1| succinyl-CoA synthetase small subunit, putative [Aedes aegypti] gi|157114413|ref|XP_001652259.1| succinyl-CoA synthetase small subunit, putative [Aedes aegypti] gi|157114415|ref|XP_001652260.1| succinyl-CoA synthetase small subunit, putative [Aedes aegypti] gi|94468890|gb|ABF18294.1| succinyl-CoA synthetase alpha subunit [Aedes aegypti] gi|108877302|gb|EAT41527.1| AAEL006833-PA [Aedes aegypti] gi|108877304|gb|EAT41529.1| AAEL006833-PB [Aedes aegypti] gi|403182833|gb|EJY57658.1| AAEL006833-PC [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/303 (78%), Positives = 265/303 (87%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y +TR NL+L S SKVICQGFTGKQGTFHS+QA+EYGTK+VGGVSPGKGG+ HL+LPVFN
Sbjct: 24 YESTRKNLKLNSNSKVICQGFTGKQGTFHSQQALEYGTKLVGGVSPGKGGRQHLNLPVFN 83
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
+VKEA+ ATGA+ATVIYVPPPGAA AI EA++AE+PL+VCITEG+PQ DMVKVKH L+ Q
Sbjct: 84 SVKEAKAATGADATVIYVPPPGAANAIMEAIEAEIPLVVCITEGVPQHDMVKVKHALLAQ 143
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
KSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLTYEAVHQTT+VGLGQTL
Sbjct: 144 DKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTL 203
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGII---------------LIGEIGGGPNAKPV 242
CVGIGGDPFNGT+FIDCLEVFLKDP+TKGII + + G AKPV
Sbjct: 204 CVGIGGDPFNGTDFIDCLEVFLKDPDTKGIILIGEIGGVAEEKAADYLMQYNQGIKAKPV 263
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG++APPGRRMGHAGAIISGGKGGAQDKI+ALEKAGVIVTRSPAQMG EL KEMKR
Sbjct: 264 VSFIAGLSAPPGRRMGHAGAIISGGKGGAQDKINALEKAGVIVTRSPAQMGKELFKEMKR 323
Query: 303 LNL 305
L L
Sbjct: 324 LEL 326
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312375154|gb|EFR22577.1| hypothetical protein AND_14503 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/327 (73%), Positives = 266/327 (81%), Gaps = 39/327 (11%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y +TR NL+L S SKVICQGFTGKQGTFHS+QAIEYGT++VGGVSPGKGG+THLD PVFN
Sbjct: 138 YESTRQNLKLNSNSKVICQGFTGKQGTFHSQQAIEYGTQLVGGVSPGKGGRTHLDRPVFN 197
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TV EA+ ATGAEA+VIYVPPPGAAKAI E+++AEMPLIVCITEG+PQ DMVKVKH L+ Q
Sbjct: 198 TVAEAKKATGAEASVIYVPPPGAAKAIMESIEAEMPLIVCITEGVPQHDMVKVKHALLAQ 257
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
SKSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLTYEAVHQTT+VGLGQTL
Sbjct: 258 SKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTL 317
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKG------------------IILIGEIGG---- 235
CVGIGGDPFNGT+FIDCLEVFLKDPETKG ++ ++
Sbjct: 318 CVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEENAAAYLMQYNQVDSIDID 377
Query: 236 -----------------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDAL 278
G AKPVVSFIAG++APPGRRMGHAGAIISGGKGGAQDKI+AL
Sbjct: 378 YDNGCGRLSNSIFLPLQGIKAKPVVSFIAGLSAPPGRRMGHAGAIISGGKGGAQDKINAL 437
Query: 279 EKAGVIVTRSPAQMGNELLKEMKRLNL 305
EKAGVIVTRSPAQMG EL KEMKRL L
Sbjct: 438 EKAGVIVTRSPAQMGKELFKEMKRLEL 464
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242008595|ref|XP_002425088.1| succinyl-CoA ligase subunit alpha , putative [Pediculus humanus corporis] gi|212508753|gb|EEB12350.1| succinyl-CoA ligase subunit alpha , putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 237/320 (74%), Positives = 271/320 (84%), Gaps = 20/320 (6%)
Query: 1 CQFVAIRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60
CQ + ++N + Y ATRPNL++ +KVICQGFTGKQGTFHS QA+EYGT++VGG
Sbjct: 14 CQTLKLQNVRTN-----YNATRPNLKINKDTKVICQGFTGKQGTFHSVQALEYGTQIVGG 68
Query: 61 VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120
VSPGKGGKTHL+ PVFN+VKEA ATGA A+VIYVPPPGAAKAI E+++AEMPLIVCITE
Sbjct: 69 VSPGKGGKTHLEKPVFNSVKEAMQATGATASVIYVPPPGAAKAILESIEAEMPLIVCITE 128
Query: 121 GIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTL 180
GIPQ DMVKVKH+L+RQ+KSRLIGPNCPGIIA ++CKIGIMPGHIH++GCVG+VSRSGTL
Sbjct: 129 GIPQSDMVKVKHQLLRQNKSRLIGPNCPGIIASDECKIGIMPGHIHKKGCVGIVSRSGTL 188
Query: 181 TYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGII------------ 228
TYEAVHQTTQVGLGQTLCVGIGGDPFNGT+FIDCLE F+KDP+TKGII
Sbjct: 189 TYEAVHQTTQVGLGQTLCVGIGGDPFNGTDFIDCLECFIKDPDTKGIILIGEIGGVAEEQ 248
Query: 229 ---LIGEIGGGPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIV 285
+ + G AKPVVSFIAG++APPGRRMGHAGAIISGGKGGAQDKI ALE AGVIV
Sbjct: 249 AAEYLTKHNYGIKAKPVVSFIAGLSAPPGRRMGHAGAIISGGKGGAQDKIKALESAGVIV 308
Query: 286 TRSPAQMGNELLKEMKRLNL 305
T+SPA+MG+EL KEMKRL L
Sbjct: 309 TKSPAKMGSELFKEMKRLEL 328
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170068274|ref|XP_001868803.1| succinyl-CoA ligase subunit alpha [Culex quinquefasciatus] gi|167864342|gb|EDS27725.1| succinyl-CoA ligase subunit alpha [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/297 (80%), Positives = 260/297 (87%), Gaps = 16/297 (5%)
Query: 25 LRLTSKSK-VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
+RL S+ K VICQGFTGKQGTFHS+QAIEYGTK+VGGVSPGKGGKTHLDLPVFN+VKEA+
Sbjct: 7 VRLFSRVKLVICQGFTGKQGTFHSQQAIEYGTKLVGGVSPGKGGKTHLDLPVFNSVKEAK 66
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143
AT A+ATVIYVPPPGAAKAI EA++AEMPLIVCITEG+PQ DMVKVKH L+ Q KSRL+
Sbjct: 67 QATAADATVIYVPPPGAAKAILEAIEAEMPLIVCITEGVPQHDMVKVKHALLAQEKSRLV 126
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLTYEAVHQTT+V LGQTLCVGIGG
Sbjct: 127 GPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVNLGQTLCVGIGG 186
Query: 204 DPFNGTNFIDCLEVFLKDPETKGII---------------LIGEIGGGPNAKPVVSFIAG 248
DPFNGT+FIDCLEVFLKDPETKGII + + G AKPVVSFIAG
Sbjct: 187 DPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKAADYLMQYNQGIKAKPVVSFIAG 246
Query: 249 ITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
++APPGRRMGHAGAIISGGKGGAQDKI+ALEK+GVIVTRSPAQMG EL KEMKRL L
Sbjct: 247 LSAPPGRRMGHAGAIISGGKGGAQDKINALEKSGVIVTRSPAQMGKELYKEMKRLEL 303
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|124487928|gb|ABN12047.1| putative succinate-CoA ligase, GDP-forming, alpha subunit [Maconellicoccus hirsutus] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 234/285 (82%), Positives = 258/285 (90%), Gaps = 15/285 (5%)
Query: 36 QGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV 95
QGFTGKQGTFHSKQA+EYGTKVVGGVSPGKGGK+HLDLPVFN+V+EA+DATGA+ATVIYV
Sbjct: 1 QGFTGKQGTFHSKQALEYGTKVVGGVSPGKGGKSHLDLPVFNSVREAKDATGADATVIYV 60
Query: 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ 155
PP GAAKAI EA++AEMPLIVCITEGIPQ DMVKVKH L+RQ+KSRLIGPNCPGIIAP+Q
Sbjct: 61 PPGGAAKAIIEAVEAEMPLIVCITEGIPQQDMVKVKHVLVRQNKSRLIGPNCPGIIAPDQ 120
Query: 156 CKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCL 215
CKIGIMPGH+HQ+G +G+VSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGT+FIDCL
Sbjct: 121 CKIGIMPGHVHQKGIIGIVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTDFIDCL 180
Query: 216 EVFLKDPETKGII---------------LIGEIGGGPNAKPVVSFIAGITAPPGRRMGHA 260
EVFLKDPETKGII + + GPNAKPVVSFIAG+TAPPGRRMGHA
Sbjct: 181 EVFLKDPETKGIILIGEIGGVAEENAAEYLIQNNSGPNAKPVVSFIAGLTAPPGRRMGHA 240
Query: 261 GAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
GAIISGGKGGAQDKI+ALEKAGV+V+RSPAQMGNELLK M++ NL
Sbjct: 241 GAIISGGKGGAQDKINALEKAGVVVSRSPAQMGNELLKLMRQKNL 285
|
Source: Maconellicoccus hirsutus Species: Maconellicoccus hirsutus Genus: Maconellicoccus Family: Pseudococcidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321465554|gb|EFX76555.1| hypothetical protein DAPPUDRAFT_306118 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 233/298 (78%), Positives = 259/298 (86%), Gaps = 15/298 (5%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y++TR L+LT ++V+CQGFTGKQGTFHSKQAI+YGT +VGGVSPGKGGK HL +PVFN
Sbjct: 26 YSSTRHQLKLTKSTRVLCQGFTGKQGTFHSKQAIDYGTNMVGGVSPGKGGKVHLGVPVFN 85
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TV EA++A +ATVIYVPPPGAAKAI EA+DAE+PLIVCITEGIPQ DMVKVKHRL+RQ
Sbjct: 86 TVLEAKEAVQPDATVIYVPPPGAAKAIMEAMDAEIPLIVCITEGIPQQDMVKVKHRLMRQ 145
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+KSRLIGPNCPGIIAP +CKIGIMPGHIHQ+GCVG+VSRSGTLTYEAVHQTTQVGLGQTL
Sbjct: 146 NKSRLIGPNCPGIIAPGKCKIGIMPGHIHQQGCVGIVSRSGTLTYEAVHQTTQVGLGQTL 205
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGII---------------LIGEIGGGPNAKPV 242
CVGIGGDPFNGTNFIDCLEVFLKDPETKGII + + G N KPV
Sbjct: 206 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGAEERAAEYLTQHNSGDNRKPV 265
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300
VSFIAG+TAPPGRRMGHAGAIISGGKGGAQDKI ALE+AGV+VTRSPAQ+G L+KEM
Sbjct: 266 VSFIAGLTAPPGRRMGHAGAIISGGKGGAQDKIMALERAGVVVTRSPAQLGTTLMKEM 323
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 306 | ||||||
| FB|FBgn0004888 | 328 | Scsalpha "Succinyl coenzyme A | 0.970 | 0.905 | 0.658 | 1.3e-100 | |
| UNIPROTKB|Q5ZL83 | 331 | SUCLG1 "Uncharacterized protei | 0.980 | 0.906 | 0.603 | 1.5e-97 | |
| ZFIN|ZDB-GENE-040912-101 | 324 | suclg1 "succinate-CoA ligase, | 0.931 | 0.879 | 0.61 | 5.3e-95 | |
| RGD|619821 | 346 | Suclg1 "succinate-CoA ligase, | 0.931 | 0.823 | 0.616 | 1.1e-94 | |
| UNIPROTKB|E2R0Y5 | 346 | SUCLG1 "Uncharacterized protei | 0.941 | 0.832 | 0.600 | 1e-93 | |
| UNIPROTKB|O19069 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.931 | 0.823 | 0.603 | 1e-93 | |
| UNIPROTKB|P53597 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.931 | 0.823 | 0.596 | 2.7e-93 | |
| UNIPROTKB|F1SNZ7 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.931 | 0.823 | 0.603 | 2.7e-93 | |
| MGI|MGI:1927234 | 346 | Suclg1 "succinate-CoA ligase, | 0.931 | 0.823 | 0.6 | 3.4e-93 | |
| UNIPROTKB|F1MZ38 | 346 | SUCLG1 "Succinyl-CoA ligase [A | 0.931 | 0.823 | 0.59 | 1.7e-91 |
| FB|FBgn0004888 Scsalpha "Succinyl coenzyme A synthetase alpha subunit" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
Identities = 210/319 (65%), Positives = 229/319 (71%)
Query: 3 FVA-IRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXX 61
FVA +R NS Y TR NL+L S+VICQGFTGKQGTFHS+QA+EY
Sbjct: 15 FVAGVRCNSQ------YNKTRGNLKLNGDSRVICQGFTGKQGTFHSQQALEYGTKLVGGI 68
Query: 62 XXXXXXXTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121
HL LPVF +V EA+ AT ATVIYVPPPGAA AI EAL+AE+PLIVCITEG
Sbjct: 69 SPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEG 128
Query: 122 IPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLT 181
+PQ DMVKVKH LI QSKSRL+GPNCPGIIAPEQCKIGIMPGHIH+RG +GVVSRSGTLT
Sbjct: 129 VPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLT 188
Query: 182 YEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK---------------X 226
YEAVHQTT+VGLGQTLCVGIGGDPFNGT+FIDCLEVFLKDPETK
Sbjct: 189 YEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPETKGIILIGEIGGVAEEKA 248
Query: 227 XXXXXXXXXXPNAKPVVSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVT 286
AKPVVSFIAG++APPGRRM DKI ALEKAGVIVT
Sbjct: 249 ADYLTEYNSGIKAKPVVSFIAGVSAPPGRRMGHAGAIISGGKGGANDKIAALEKAGVIVT 308
Query: 287 RSPAQMGNELLKEMKRLNL 305
RSPA+MG+EL KEMKRL L
Sbjct: 309 RSPAKMGHELFKEMKRLEL 327
|
|
| UNIPROTKB|Q5ZL83 SUCLG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 190/315 (60%), Positives = 229/315 (72%)
Query: 6 IRNNSSKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXX 65
+R + + V YAA+R NL + +KVICQGFTGKQGTFHS+QA+EY
Sbjct: 16 LRLHQNGVRRCSYAASRKNLYINKSTKVICQGFTGKQGTFHSQQALEYGTNLVGGVSPGK 75
Query: 66 XXXTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL 125
THL LPVFN+VKEA++ TGA ATVIYVPPP AA AI+EA+DAEMPL+VCITEGIPQ
Sbjct: 76 GGKTHLGLPVFNSVKEAKEQTGASATVIYVPPPFAAAAINEAIDAEMPLVVCITEGIPQQ 135
Query: 126 DMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAV 185
DMV+VKHRL+RQ+K+RL+GPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAV
Sbjct: 136 DMVRVKHRLLRQNKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAV 195
Query: 186 HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXX 230
HQTTQVGLGQ+ CVGIGGDPFNGTNFIDCL+VFLKDP T+
Sbjct: 196 HQTTQVGLGQSFCVGIGGDPFNGTNFIDCLDVFLKDPHTEGIILIGEIGGNAEEDAASFL 255
Query: 231 XXXXXXPNAKPVVSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPA 290
PNAKPVVSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPA
Sbjct: 256 KENNSGPNAKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPA 315
Query: 291 QMGNELLKEMKRLNL 305
Q+G+ + KE ++ L
Sbjct: 316 QLGSTIHKEFEKRKL 330
|
|
| ZFIN|ZDB-GENE-040912-101 suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 945 (337.7 bits), Expect = 5.3e-95, P = 5.3e-95
Identities = 183/300 (61%), Positives = 221/300 (73%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y+ +R NL + +KVICQGFTGKQGTFHS+Q+++Y THL LPVFN
Sbjct: 21 YSGSRNNLYINKNTKVICQGFTGKQGTFHSQQSLDYGSQLVGGVSPGKGGKTHLGLPVFN 80
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
+VKEA+D TGAEATVIYVPPP AA AI EA+DAEMPL VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 81 SVKEAKDGTGAEATVIYVPPPFAAAAIIEAIDAEMPLAVCITEGIPQQDMVRVKHRLLRQ 140
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+K+RL+GPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTL YEAVHQTTQVGLGQ+L
Sbjct: 141 NKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLPYEAVHQTTQVGLGQSL 200
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
C+GIGGDPFNGTNFIDCLEVFL+DP+T+ NAKPV
Sbjct: 201 CIGIGGDPFNGTNFIDCLEVFLQDPKTEGIILIGEIGGDAEENAAEYLKQHNSGANAKPV 260
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ+G+ + KE ++
Sbjct: 261 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGSTIFKEFEK 320
|
|
| RGD|619821 Suclg1 "succinate-CoA ligase, alpha subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
Identities = 185/300 (61%), Positives = 218/300 (72%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R N+ + +KVICQGFTGKQGTFHS+QA+EY HL LPVFN
Sbjct: 43 YTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKH+L RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPGII P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
C+GIGGDPFNGTNFIDCL+VFLKDP T+ P AKPV
Sbjct: 223 CIGIGGDPFNGTNFIDCLDVFLKDPATEGIVLIGEIGGHAEENAAEFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRM ++KI AL+ AGVIV+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVIVSMSPAQLGTCMYKEFEK 342
|
|
| UNIPROTKB|E2R0Y5 SUCLG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 182/303 (60%), Positives = 220/303 (72%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA++Y THL LPVFN
Sbjct: 43 YIASRKHLYVDKNTKVICQGFTGKQGTFHSQQALDYGTQLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA++AE+PL+VCITEGIPQ DMV+VKH+L+RQ
Sbjct: 103 TVKEAKEETGATASVIYVPPPFAAAAINEAVEAEVPLVVCITEGIPQQDMVRVKHKLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPGII P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
CVGIGGDPFNGT+FIDCLE+FL DP T+ P AKPV
Sbjct: 223 CVGIGGDPFNGTDFIDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
Query: 303 LNL 305
L
Sbjct: 343 RKL 345
|
|
| UNIPROTKB|O19069 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 181/300 (60%), Positives = 218/300 (72%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA+EY THL LPVFN
Sbjct: 43 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP T+ P +KPV
Sbjct: 223 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 342
|
|
| UNIPROTKB|P53597 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 179/300 (59%), Positives = 219/300 (73%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R +L + +K+ICQGFTGKQGTFHS+QA+EY THL LPVFN
Sbjct: 43 YTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA++AE+PL+VCITEGIPQ DMV+VKH+L+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 EKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
CVGIGGDPFNGT+FIDCLE+FL D T+ PN+KPV
Sbjct: 223 CVGIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
|
|
| UNIPROTKB|F1SNZ7 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 181/300 (60%), Positives = 217/300 (72%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA+EY THL LPVFN
Sbjct: 43 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP T+ P +KPV
Sbjct: 223 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQPGTTIYKEFEK 342
|
|
| MGI|MGI:1927234 Suclg1 "succinate-CoA ligase, GDP-forming, alpha subunit" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 180/300 (60%), Positives = 216/300 (72%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y A+R ++ + +K+ICQGFTGKQGTFHS+QA+EY HL LPVFN
Sbjct: 43 YTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL RQ
Sbjct: 103 TVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
C+GIGGDPFNGT+FIDCLEVFL DP T+ P AKPV
Sbjct: 223 CIGIGGDPFNGTDFIDCLEVFLNDPATEGIILIGEIGGHAEENAAAFLKEHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAGITAPPGRRM ++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGITAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
|
|
| UNIPROTKB|F1MZ38 SUCLG1 "Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 177/300 (59%), Positives = 215/300 (71%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYXXXXXXXXXXXXXXXTHLDLPVFN 77
Y +R +L + +K+ICQGFTGKQGTFHS+QA+EY THL LPVFN
Sbjct: 43 YTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFN 102
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI EA++AE+ L+VCITEGIPQ DMV+VKH+L+RQ
Sbjct: 103 TVKEAKEQTGATASVIYVPPPFAAAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQ 162
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RL+GPNCPG+I P +CKIGIMPGHIH++G VG+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 163 GKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSL 222
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETK---------------XXXXXXXXXXXPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP T+ P AKPV
Sbjct: 223 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKAKPV 282
Query: 243 VSFIAGITAPPGRRMXXXXXXXXXXXXXXQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRM ++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 283 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKIAALQSAGVVVSMSPAQLGTTMYKEFEK 342
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P68209 | SUCA1_ARATH | 6, ., 2, ., 1, ., 5 | 0.6620 | 0.8986 | 0.7925 | yes | N/A |
| O19069 | SUCA_PIG | 6, ., 2, ., 1, ., 5 | 0.6798 | 0.9411 | 0.8323 | yes | N/A |
| Q1RH56 | SUCD_RICBR | 6, ., 2, ., 1, ., 5 | 0.6877 | 0.8888 | 0.9347 | yes | N/A |
| Q8CPH4 | SUCD_STAES | 6, ., 2, ., 1, ., 5 | 0.5442 | 0.9215 | 0.9337 | yes | N/A |
| O08371 | SUCD_RICPR | 6, ., 2, ., 1, ., 5 | 0.6529 | 0.9084 | 0.9520 | yes | N/A |
| P80865 | SUCD_BACSU | 6, ., 2, ., 1, ., 5 | 0.5972 | 0.9183 | 0.9366 | yes | N/A |
| Q6ZL94 | SUCA_ORYSJ | 6, ., 2, ., 1, ., 5 | 0.6610 | 0.9248 | 0.8549 | yes | N/A |
| Q8GTQ9 | SUCA1_SOLLC | 6, ., 2, ., 1, ., 5 | 0.6644 | 0.9346 | 0.8614 | N/A | N/A |
| Q51567 | SUCD_PSEAE | 6, ., 2, ., 1, ., 5 | 0.6338 | 0.8888 | 0.9220 | yes | N/A |
| Q8NX01 | SUCD_STAAW | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| Q5HPU4 | SUCD_STAEQ | 6, ., 2, ., 1, ., 5 | 0.5476 | 0.9215 | 0.9337 | yes | N/A |
| Q9YGD2 | SUCA_COLLI | 6, ., 2, ., 1, ., 5 | 0.6996 | 0.9411 | 0.9411 | N/A | N/A |
| Q6DQL1 | SUCA2_SOLLC | 6, ., 2, ., 1, ., 5 | 0.6576 | 0.9248 | 0.8397 | N/A | N/A |
| P0AGE9 | SUCD_ECOLI | 6, ., 2, ., 1, ., 5 | 0.6193 | 0.9052 | 0.9584 | N/A | N/A |
| Q9WUM5 | SUCA_MOUSE | 6, ., 2, ., 1, ., 5 | 0.6798 | 0.9411 | 0.8323 | yes | N/A |
| P53400 | SUCA2_TRIVA | 6, ., 2, ., 1, ., 4 | 0.5353 | 0.9150 | 0.9061 | N/A | N/A |
| P53401 | SUCA3_TRIVA | 6, ., 2, ., 1, ., 4 | 0.5286 | 0.9150 | 0.9061 | N/A | N/A |
| P66866 | SUCD_STAAM | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| O13750 | SUCA_SCHPO | 6, ., 2, ., 1, ., 5 | 0.5981 | 0.9836 | 0.9093 | yes | N/A |
| P53596 | SUCA_CAEEL | 6, ., 2, ., 1, ., 5 | 0.6634 | 0.9509 | 0.9037 | yes | N/A |
| Q8LAD2 | SUCA2_ARATH | 6, ., 2, ., 1, ., 5 | 0.6689 | 0.8986 | 0.8064 | no | N/A |
| Q7U0Z0 | SUCD_MYCBO | 6, ., 2, ., 1, ., 5 | 0.4638 | 0.9084 | 0.9174 | yes | N/A |
| P13086 | SUCA_RAT | 6, ., 2, ., 1, ., 5 | 0.7260 | 0.9411 | 0.8323 | yes | N/A |
| P36967 | SUCA_DICDI | 6, ., 2, ., 1, ., 5 | 0.6969 | 0.9313 | 0.9047 | yes | N/A |
| P71558 | SUCD_MYCTU | 6, ., 2, ., 1, ., 5 | 0.4605 | 0.9084 | 0.9174 | yes | N/A |
| Q5HGI6 | SUCD_STAAC | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| Q58DR8 | SUCA_BOVIN | 6, ., 2, ., 1, ., 5 | 0.6666 | 0.9411 | 0.8323 | yes | N/A |
| Q92I22 | SUCD_RICCN | 6, ., 2, ., 1, ., 5 | 0.6689 | 0.9052 | 0.9486 | yes | N/A |
| O26663 | SUCD_METTH | 6, ., 2, ., 1, ., 5 | 0.4755 | 0.8954 | 0.9351 | yes | N/A |
| Q94522 | SUCA_DROME | 6, ., 2, ., 1, ., 5 | 0.7523 | 0.9705 | 0.9054 | yes | N/A |
| P45102 | SUCD_HAEIN | 6, ., 2, ., 1, ., 5 | 0.625 | 0.9019 | 0.9419 | yes | N/A |
| P53598 | SUCA_YEAST | 6, ., 2, ., 1, ., 5 | 0.5228 | 0.9379 | 0.8723 | yes | N/A |
| O28098 | SUCD2_ARCFU | 6, ., 2, ., 1, ., 5 | 0.5105 | 0.8888 | 0.9477 | yes | N/A |
| Q6GHI9 | SUCD_STAAR | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| P53591 | SUCD_COXBU | 6, ., 2, ., 1, ., 5 | 0.6241 | 0.8856 | 0.9217 | yes | N/A |
| P09143 | SUCD_THETH | 6, ., 2, ., 1, ., 5 | 0.5174 | 0.8921 | 0.9479 | yes | N/A |
| Q9P727 | SUCA_NEUCR | 6, ., 2, ., 1, ., 5 | 0.6297 | 0.9673 | 0.8888 | N/A | N/A |
| P53597 | SUCA_HUMAN | 6, ., 2, ., 1, ., 5 | 0.6732 | 0.9411 | 0.8323 | yes | N/A |
| Q4ULQ8 | SUCD_RICFE | 6, ., 2, ., 1, ., 5 | 0.6724 | 0.9052 | 0.9486 | yes | N/A |
| Q9AKE1 | SUCD_RICTY | 6, ., 2, ., 1, ., 5 | 0.6460 | 0.9084 | 0.9520 | yes | N/A |
| P0AGF0 | SUCD_ECOL6 | 6, ., 2, ., 1, ., 5 | 0.6193 | 0.9052 | 0.9584 | yes | N/A |
| P0AGF1 | SUCD_ECO57 | 6, ., 2, ., 1, ., 5 | 0.6193 | 0.9052 | 0.9584 | N/A | N/A |
| O67547 | SUCD_AQUAE | 6, ., 2, ., 1, ., 5 | 0.5544 | 0.9215 | 0.9245 | yes | N/A |
| Q6G9W7 | SUCD_STAAS | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| Q58643 | SUCD_METJA | 6, ., 2, ., 1, ., 5 | 0.4963 | 0.8594 | 0.8945 | yes | N/A |
| P99070 | SUCD_STAAN | 6, ., 2, ., 1, ., 5 | 0.5612 | 0.9215 | 0.9337 | yes | N/A |
| P53399 | SUCA1_TRIVA | 6, ., 2, ., 1, ., 4 | 0.5252 | 0.9150 | 0.9061 | N/A | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.2.1 | 0.983 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 306 | |||
| PTZ00187 | 317 | PTZ00187, PTZ00187, succinyl-CoA synthetase alpha | 0.0 | |
| PRK05678 | 291 | PRK05678, PRK05678, succinyl-CoA synthetase subuni | 1e-169 | |
| COG0074 | 293 | COG0074, SucD, Succinyl-CoA synthetase, alpha subu | 1e-153 | |
| PLN00125 | 300 | PLN00125, PLN00125, Succinyl-CoA ligase [GDP-formi | 1e-150 | |
| TIGR01019 | 286 | TIGR01019, sucCoAalpha, succinyl-CoA synthetase, a | 1e-147 | |
| pfam00549 | 128 | pfam00549, Ligase_CoA, CoA-ligase | 7e-32 | |
| pfam02629 | 96 | pfam02629, CoA_binding, CoA binding domain | 5e-31 | |
| smart00881 | 100 | smart00881, CoA_binding, CoA binding domain | 2e-28 | |
| PLN02522 | 608 | PLN02522, PLN02522, ATP citrate (pro-S)-lyase | 1e-19 | |
| pfam13607 | 138 | pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like | 2e-09 | |
| COG1042 | 598 | COG1042, COG1042, Acyl-CoA synthetase (NDP forming | 3e-09 | |
| TIGR02717 | 447 | TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synt | 7e-09 | |
| PRK06091 | 555 | PRK06091, PRK06091, membrane protein FdrA; Validat | 0.004 |
| >gnl|CDD|240307 PTZ00187, PTZ00187, succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Score = 502 bits (1295), Expect = 0.0
Identities = 211/303 (69%), Positives = 245/303 (80%), Gaps = 14/303 (4%)
Query: 16 EIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DL 73
+ + P + + +KVICQG TGKQGTFH++QAIEYGTK+VGGV+P K G THL L
Sbjct: 15 ARSSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGL 74
Query: 74 PVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHR 133
PVF TVKEA+ ATGA+A+VIYVPPP AA AI EA++AE+PL+VCITEGIPQ DMVKVKH
Sbjct: 75 PVFATVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHA 134
Query: 134 LIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGL 193
L+ Q+K+RLIGPNCPGII P +CKIGIMPGHIH++G +G+VSRSGTLTYEAV QTT VGL
Sbjct: 135 LLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIGIVSRSGTLTYEAVAQTTAVGL 194
Query: 194 GQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKP 241
GQ+ CVGIGGDPFNGTNFIDCL++FL DPET+GIILIGEIGG P KP
Sbjct: 195 GQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKKP 254
Query: 242 VVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
VVSFIAGITAPPGRRMGHAGAIISGGKG A KI+ALE AGV V +SPAQ+G +L+ MK
Sbjct: 255 VVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMK 314
Query: 302 RLN 304
+
Sbjct: 315 KKG 317
|
Length = 317 |
| >gnl|CDD|180194 PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Score = 471 bits (1214), Expect = e-169
Identities = 188/288 (65%), Positives = 224/288 (77%), Gaps = 12/288 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ +KVI QG TGKQGTFH++Q + YGT +VGGV+PGKGG T L LPVFNTV EA +AT
Sbjct: 5 INKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEAT 64
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
GA A+VIYVPPP AA AI EA+DA + LIVCITEGIP LDM++VK L + K+RLIGPN
Sbjct: 65 GANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYL-ERKKTRLIGPN 123
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
CPGII P +CKIGIMPGHIH++G VGVVSRSGTLTYEAV Q T +G GQ+ CVGIGGDP
Sbjct: 124 CPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPI 183
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAPPGR 255
NGTNFID LE F +DPET+ I++IGEIGG KPVV +IAG+TAPPG+
Sbjct: 184 NGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVTKPVVGYIAGVTAPPGK 243
Query: 256 RMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
RMGHAGAIISGGKG A++K +ALE AGV V R+P+++G L + +K L
Sbjct: 244 RMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291
|
Length = 291 |
| >gnl|CDD|223152 COG0074, SucD, Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 430 bits (1108), Expect = e-153
Identities = 176/289 (60%), Positives = 218/289 (75%), Gaps = 13/289 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
L +KVI QG TGKQGTFH++Q + YGTK+VGGV+PGKGG+T L LPVFNTV+EA T
Sbjct: 5 LNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKET 64
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
GA A+VI+VPPP AA AI EA+DA + L+V ITEGIP LDM+++K R+ +RLIGPN
Sbjct: 65 GANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYA-REKGTRLIGPN 123
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
CPGII P +CKIGIMPG+I++ G +G+VSRSGTLTYEAV Q T+ GLGQ+ +GIGGDP
Sbjct: 124 CPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPI 183
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA------------KPVVSFIAGITAPPG 254
GT+FID LE+F DPET+ I++IGEIGG KPVV++IAG TAP G
Sbjct: 184 PGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRTAPEG 243
Query: 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303
+RMGHAGAI+SGGKG A+ KI ALE AGV V +PA++G LL+ +K
Sbjct: 244 KRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292
|
Length = 293 |
| >gnl|CDD|215066 PLN00125, PLN00125, Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Score = 422 bits (1085), Expect = e-150
Identities = 201/299 (67%), Positives = 236/299 (78%), Gaps = 12/299 (4%)
Query: 19 AATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT 78
A+ P + + ++VICQG TGK GTFH++QAIEYGTK+VGGV+P KGG HL LPVFNT
Sbjct: 1 ASPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNT 60
Query: 79 VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQS 138
V EA+ T A A+VIYVPPP AA AI EA++AE+ L+VCITEGIPQ DMV+VK L RQS
Sbjct: 61 VAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQS 120
Query: 139 KSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLC 198
K+RLIGPNCPGII P +CKIGIMPG+IH+ G +G+VSRSGTLTYEAV QTT VGLGQ+ C
Sbjct: 121 KTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTC 180
Query: 199 VGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGGP------------NAKPVVSFI 246
VGIGGDPFNGTNF+DCLE F+KDP+T+GIILIGEIGG KPVV+FI
Sbjct: 181 VGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFI 240
Query: 247 AGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
AG+TAPPGRRMGHAGAI+SGGKG AQDKI AL +AGV V SPA++G +L+ K L
Sbjct: 241 AGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299
|
Length = 300 |
| >gnl|CDD|130091 TIGR01019, sucCoAalpha, succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Score = 413 bits (1064), Expect = e-147
Identities = 182/283 (64%), Positives = 216/283 (76%), Gaps = 12/283 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
L +KVI QG TG QG+FH++Q + YGT +VGGV+PGKGG T L LPVF++VKEA + T
Sbjct: 3 LDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEET 62
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
GA A+VI+VP P AA AI EA+DA + LIVCITEGIP DM+KVK + S +RLIGPN
Sbjct: 63 GANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEE-SGTRLIGPN 121
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
CPGII P +CKIGIMPGHIH+ G VG+VSRSGTLTYEAVHQ T+ G GQ+ CVGIGGDP
Sbjct: 122 CPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPV 181
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGPN-----------AKPVVSFIAGITAPPGR 255
NGT+FID LE F KDPET+ I++IGEIGG +KPVV FIAG TAPPG+
Sbjct: 182 NGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMSKPVVGFIAGATAPPGK 241
Query: 256 RMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298
RMGHAGAIISGGKG A+ KI+ALE AGV V +SP+ +G L +
Sbjct: 242 RMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAE 284
|
This model describes succinyl-CoA synthetase alpha subunits but does not discriminate between GTP-specific and ATP-specific reactions. The model is designated as subfamily rather than equivalog for that reason. ATP citrate lyases appear to form an outgroup [Energy metabolism, TCA cycle]. Length = 286 |
| >gnl|CDD|215988 pfam00549, Ligase_CoA, CoA-ligase | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-32
Identities = 38/128 (29%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 174 VSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEI 233
+ GTL EA+ G G + +GGD F T ID L++ DPE K I+L +
Sbjct: 1 LVNGGTLAMEAMDLIKLAGGGPHNFIDLGGDAFTPTTRIDALKLEAADPEVKVILLDIVL 60
Query: 234 GGGPNA-----------------KPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKID 276
G G PVV+ + G A P R A A+ G A
Sbjct: 61 GYGACEDPAGGLLKAIKEARARELPVVARVCGTEADPQGREEQAKALAESGVLIASSNNQ 120
Query: 277 ALEKAGVI 284
AL AG +
Sbjct: 121 ALRAAGAV 128
|
This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains, malate CoA ligase and ATP-citrate lyase. Some members of the family utilise ATP others use GTP. Length = 128 |
| >gnl|CDD|202320 pfam02629, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-31
Identities = 40/96 (41%), Positives = 53/96 (55%), Gaps = 2/96 (2%)
Query: 28 TSKSKVICQGFTGK--QGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDA 85
+KV G G QG +H Q + YG K+V GV+P KGG +PV+ +V E +
Sbjct: 1 DKDTKVAVIGAGGLGIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEED 60
Query: 86 TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121
TG + VI VP P A +AI E +DA + IV IT G
Sbjct: 61 TGVDVAVITVPAPFAQEAIDELVDAGIKGIVNITPG 96
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 96 |
| >gnl|CDD|214881 smart00881, CoA_binding, CoA binding domain | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 2e-28
Identities = 43/99 (43%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAI---EYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83
L + V G +G G+F EYGTK VGGV PGK G +PV+++V EA
Sbjct: 2 LNPNTSVAVVGASGNLGSFGLAVMRNLLEYGTKFVGGVYPGKVGPKVDGVPVYDSVAEAP 61
Query: 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122
+ TG + VI+VP A AI EA++A + IV ITEGI
Sbjct: 62 EETGVDVAVIFVPAEAAPDAIDEAIEAGIKGIVVITEGI 100
|
This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Length = 100 |
| >gnl|CDD|178137 PLN02522, PLN02522, ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 1e-19
Identities = 80/267 (29%), Positives = 122/267 (45%), Gaps = 39/267 (14%)
Query: 57 VVGGVSPGKG-------GKTHLDLPVFNTVKEARDATGAEATVI--YVPPPGAAKAIHEA 107
V G ++PG G+ + +PV +++ A A A V + AA + EA
Sbjct: 40 VAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAH-PTADVFINFASFRSAAASSMEA 98
Query: 108 LDAE-MPLIVCITEGIPQLDMVKVKHRLI--RQSKSRLIGPNCPGIIAPEQCKIG----- 159
L + ++ I EG+P+ D K + R + +IGP G I KIG
Sbjct: 99 LKQPTIRVVAIIAEGVPESD---TKQLIAYARANNKVVIGPATVGGIQAGAFKIGDTAGT 155
Query: 160 ---IMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLE 216
I+ +++ G VG VS+SG ++ E + +V G + IGGD F G+ D +
Sbjct: 156 LDNIIQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVL 215
Query: 217 VFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGITA---PPGRRMGHAG 261
F P+ K I+++GE+GG G +KPVV++++G A + GHAG
Sbjct: 216 RFNNIPQIKMIVVLGELGGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAG 275
Query: 262 AIISGGKGGAQDKIDALEKAGVIVTRS 288
A G AQ K AL+ AG IV S
Sbjct: 276 AKSGGDMESAQAKNKALKDAGAIVPTS 302
|
Length = 608 |
| >gnl|CDD|205785 pfam13607, Succ_CoA_lig, Succinyl-CoA ligase like flavodoxin domain | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 2e-09
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 168 RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNG--TNFIDCLEVFLKDPETK 225
G V +VS+SG L + + G+G + V +G N +F D L+ DPET+
Sbjct: 1 PGGVALVSQSGALGAALLDWAARRGIGFSHFVSLG----NEADVDFADLLDYLADDPETR 56
Query: 226 GIIL-IGEIGGGPN----------AKPVVSFIAGITAPPGRRMG--HAGAIISGGKGGAQ 272
I+L + I G KPVV +G + G R H GA+ G+
Sbjct: 57 VILLYLEGIRDGRRFLRAARRAARKKPVVVLKSGRS-EAGARAAASHTGAL-----AGSD 110
Query: 273 DKIDA-LEKAGVIVTRSPAQM 292
DA +AGVI ++
Sbjct: 111 AVYDAAFRQAGVIRVDDLEEL 131
|
This domain contains the catalytic domain from Succinyl-CoA ligase alpha subunit and other related enzymes. A conserved histidine is involved in phosphoryl transfer. Length = 138 |
| >gnl|CDD|223972 COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 41/267 (15%)
Query: 51 IEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDA 110
+EYG + V+P L + + +V + DA + VI VP + +HE +
Sbjct: 34 LEYGQGKIYPVNPKY--DEVLGVKAYTSVADLPDA--PDLAVIVVPAKVVPEIVHELGEK 89
Query: 111 EMPLIVCITEGIPQL-----DMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ---CKIGIMP 162
+ + I+ G + ++ K R+ R+IGPNC G+I P +
Sbjct: 90 GVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPIIGLNATFDPVF 149
Query: 163 GHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIG--GDPFNGTNFIDCLEVFLK 220
G G VS+SG +++ + + G+G ++ V +G D + D LE
Sbjct: 150 GLGRGGG-GAFVSQSGAVSFAILDWANEDGMGFSIKVSLGNAAD----RDESDLLEYLAD 204
Query: 221 DPETKGIILIGEIGGGPNA-------------KPVVSFIAGITAPPGRRMGHAGAIISGG 267
DP TK I L E G + KP+++ AG + + ++G
Sbjct: 205 DPRTKAIGLYIE--GVKDGRKFLNAARAAERKKPIIALKAGRSEAGAKAAASHTGSLAG- 261
Query: 268 KGGAQDKI--DALEKAGVIVTRSPAQM 292
D+ A ++AGVI S ++
Sbjct: 262 ----SDEAYDAAFKQAGVIRVESIEEL 284
|
Length = 598 |
| >gnl|CDD|131764 TIGR02717, AcCoA-syn-alpha, acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 31/242 (12%)
Query: 67 GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL- 125
L + + +V E D + VI VP + + E + + V IT G ++
Sbjct: 46 AGEILGVKAYPSVLEIPDPV--DLAVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVG 103
Query: 126 -DMVKVKHRLI---RQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLT 181
+ +++ L+ R+ RL+GPNC GII + ++G + +S+SG L
Sbjct: 104 EEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGIAFISQSGALL 163
Query: 182 YEAVHQTTQVGLGQTLCVGIGGDPFNGT--NFIDCLEVFLKDPETKGIILIGE-IGGGPN 238
+ + G+G + V +G N + D LE DP+TK I+L E I G
Sbjct: 164 TALLDWAEKNGVGFSYFVSLG----NKADIDESDLLEYLADDPDTKVILLYLEGIKDGRK 219
Query: 239 ----------AKPVVSFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVT 286
KP+V +G + G + H GA+ G A D A ++AGVI
Sbjct: 220 FLKTAREISKKKPIVVLKSGTS-EAGAKAASSHTGAL--AGSDEAYD--AAFKQAGVIRA 274
Query: 287 RS 288
S
Sbjct: 275 DS 276
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference , one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. Length = 447 |
| >gnl|CDD|180395 PRK06091, PRK06091, membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 36/148 (24%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147
A +I V AA+ +ALD + +++ ++ + D +++K R R+ ++GP+C
Sbjct: 118 ANLALISVAGEYAAELAEQALDRNLNVMM-FSDNVTLEDEIRLKTR-AREKGLLVMGPDC 175
Query: 148 -PGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
+IA + ++ G +GV+ SGT E Q G G T +G+GG
Sbjct: 176 GTAMIA----GTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDL 231
Query: 207 N----GTNFIDCLEVFLKDPETKGIILI 230
+ G + + LE+ D +++ I +
Sbjct: 232 SAEVGGISALTALEMLSADEKSEVIAFV 259
|
Length = 555 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 100.0 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 100.0 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 100.0 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 100.0 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 100.0 | |
| PLN02522 | 608 | ATP citrate (pro-S)-lyase | 100.0 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 100.0 | |
| KOG1255|consensus | 329 | 100.0 | ||
| COG1042 | 598 | Acyl-CoA synthetase (NDP forming) [Energy producti | 100.0 | |
| PF13607 | 138 | Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin | 100.0 | |
| PRK06091 | 555 | membrane protein FdrA; Validated | 100.0 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 99.91 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 99.85 | |
| KOG1254|consensus | 600 | 99.68 | ||
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 99.65 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 99.44 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 99.44 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 99.3 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 99.29 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 99.28 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 99.16 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 99.12 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.95 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 98.8 | |
| PF00549 | 153 | Ligase_CoA: CoA-ligase; InterPro: IPR005811 This e | 98.69 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 98.66 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.63 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 98.6 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.49 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.41 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.39 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 98.27 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 98.25 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 98.13 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 98.04 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 98.01 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.97 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.88 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 97.85 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 97.8 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.8 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 97.79 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.79 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 97.78 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.78 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.75 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.71 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.7 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.67 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.65 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.64 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.61 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.54 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 97.51 | |
| KOG2741|consensus | 351 | 97.44 | ||
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.43 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.42 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 97.41 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.41 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.4 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.39 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 97.38 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 97.34 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.31 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 97.29 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.28 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.25 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 97.21 | |
| PLN02256 | 304 | arogenate dehydrogenase | 97.19 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 97.17 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.16 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.16 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 97.12 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.09 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 97.04 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.03 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.99 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 96.98 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.97 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.97 | |
| PLN02712 | 667 | arogenate dehydrogenase | 96.9 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.86 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.85 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.84 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 96.84 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 96.83 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.8 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 96.79 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 96.79 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 96.78 | |
| PRK00696 | 388 | sucC succinyl-CoA synthetase subunit beta; Provisi | 96.77 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 96.76 | |
| TIGR01016 | 386 | sucCoAbeta succinyl-CoA synthetase, beta subunit. | 96.75 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.73 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 96.72 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.68 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 96.68 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.66 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.65 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.6 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.59 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.59 | |
| PRK06091 | 555 | membrane protein FdrA; Validated | 96.57 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.57 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.56 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 96.55 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 96.55 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.54 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 96.53 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.52 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.52 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 96.51 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 96.49 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.48 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.43 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 96.43 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.42 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 96.41 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 96.39 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 96.38 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 96.38 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.37 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.36 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 96.35 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.33 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.3 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.29 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.24 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.21 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.19 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.18 | |
| PRK14046 | 392 | malate--CoA ligase subunit beta; Provisional | 96.17 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 96.17 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.13 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.12 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 96.1 | |
| PRK15204 | 476 | undecaprenyl-phosphate galactose phosphotransferas | 96.09 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 96.08 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 96.07 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 96.06 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 96.01 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.0 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.96 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 95.95 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 95.89 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 95.81 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.81 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.76 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.76 | |
| PF13727 | 175 | CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. | 95.76 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 95.74 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 95.74 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.68 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.67 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.66 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 95.64 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 95.61 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.55 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.54 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 95.54 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 95.47 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 95.46 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.44 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.44 | |
| KOG2380|consensus | 480 | 95.44 | ||
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 95.43 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 95.37 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 95.35 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.26 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 95.26 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.21 | |
| TIGR03013 | 442 | EpsB_2 sugar transferase, PEP-CTERM system associa | 95.18 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 95.09 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 95.04 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.02 | |
| COG4693 | 361 | PchG Oxidoreductase (NAD-binding), involved in sid | 95.0 | |
| PLN00124 | 422 | succinyl-CoA ligase [GDP-forming] subunit beta; Pr | 94.98 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.96 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.92 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.89 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 94.84 | |
| COG1810 | 224 | Uncharacterized protein conserved in archaea [Func | 94.7 | |
| PF02593 | 217 | dTMP_synthase: Thymidylate synthase; InterPro: IPR | 94.58 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 94.53 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 94.5 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 94.49 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 94.44 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 94.42 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 94.42 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 94.37 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.29 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 94.25 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 94.16 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 94.14 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 94.11 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.1 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.08 | |
| PF10087 | 97 | DUF2325: Uncharacterized protein conserved in bact | 94.06 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 94.02 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 93.99 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 93.9 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 93.88 | |
| KOG1203|consensus | 411 | 93.83 | ||
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 93.79 | |
| PLN02928 | 347 | oxidoreductase family protein | 93.76 | |
| COG0045 | 387 | SucC Succinyl-CoA synthetase, beta subunit [Energy | 93.72 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 93.57 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 93.51 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 93.47 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 93.45 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 93.41 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 93.4 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 93.39 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 93.37 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.31 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 93.24 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 93.23 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 93.21 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 93.19 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 93.13 | |
| KOG0409|consensus | 327 | 93.09 | ||
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 92.97 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 92.93 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 92.69 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 92.67 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 92.67 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 92.65 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.53 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 92.51 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 92.48 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 92.47 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 92.45 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 92.36 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.17 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 92.15 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 92.15 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 91.98 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 91.93 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 91.86 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 91.82 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 91.7 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 91.7 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 91.7 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 91.6 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 91.49 | |
| COG2185 | 143 | Sbm Methylmalonyl-CoA mutase, C-terminal domain/su | 91.49 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 91.39 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 91.3 | |
| PRK08223 | 287 | hypothetical protein; Validated | 91.28 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 91.14 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 91.05 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 91.04 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 91.03 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 90.94 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 90.85 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 90.72 | |
| KOG2711|consensus | 372 | 90.57 | ||
| PLN02306 | 386 | hydroxypyruvate reductase | 90.45 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 90.42 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 90.27 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 90.25 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 90.23 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 90.17 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 90.16 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 90.08 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 90.01 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 89.94 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 89.93 | |
| KOG1502|consensus | 327 | 89.9 | ||
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 89.83 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 89.83 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 89.82 | |
| PF00289 | 110 | CPSase_L_chain: Carbamoyl-phosphate synthase L cha | 89.66 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 89.45 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 89.31 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 89.14 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 89.14 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 89.12 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 89.1 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 89.0 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 89.0 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.92 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 88.9 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 88.87 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 88.83 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 88.68 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 88.63 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 88.54 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 88.52 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 88.46 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 88.37 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 88.35 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 88.23 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 88.23 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 88.07 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 88.06 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.05 | |
| COG0565 | 242 | LasT rRNA methylase [Translation, ribosomal struct | 87.92 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 87.88 | |
| PLN02494 | 477 | adenosylhomocysteinase | 87.86 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 87.85 | |
| PLN02235 | 423 | ATP citrate (pro-S)-lyase | 87.82 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 87.73 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 87.67 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 87.62 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 87.54 | |
| KOG4039|consensus | 238 | 87.49 | ||
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 87.35 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 87.27 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 87.26 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 87.18 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 87.18 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 87.16 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 87.07 | |
| PLN02735 | 1102 | carbamoyl-phosphate synthase | 87.03 | |
| KOG0069|consensus | 336 | 87.0 | ||
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 86.94 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 86.94 | |
| COG1042 | 598 | Acyl-CoA synthetase (NDP forming) [Energy producti | 86.78 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 86.75 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 86.73 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 86.59 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 86.48 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 86.46 | |
| COG0794 | 202 | GutQ Predicted sugar phosphate isomerase involved | 86.45 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 86.4 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 86.33 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 86.22 | |
| KOG2018|consensus | 430 | 85.98 | ||
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 85.95 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 85.94 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 85.9 | |
| KOG2733|consensus | 423 | 85.7 | ||
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 85.7 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 85.38 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 85.35 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 85.22 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 85.21 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 85.18 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 85.13 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 84.96 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 84.92 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 84.87 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 84.77 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 84.68 | |
| PRK06901 | 322 | aspartate-semialdehyde dehydrogenase; Provisional | 84.56 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 84.52 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 84.46 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 84.44 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 84.42 | |
| PRK12815 | 1068 | carB carbamoyl phosphate synthase large subunit; R | 84.4 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 84.38 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 84.37 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 84.25 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 84.18 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 84.05 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 84.01 | |
| PRK08289 | 477 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 83.87 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 83.82 | |
| KOG2774|consensus | 366 | 83.79 | ||
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 83.64 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 83.5 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 83.5 | |
| PLN02477 | 410 | glutamate dehydrogenase | 83.33 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 83.32 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 83.31 | |
| COG1184 | 301 | GCD2 Translation initiation factor 2B subunit, eIF | 83.24 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 83.21 | |
| PRK10433 | 228 | putative RNA methyltransferase; Provisional | 83.2 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 83.01 | |
| PRK07411 | 390 | hypothetical protein; Validated | 82.85 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 82.82 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 82.65 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 82.62 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.59 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 82.54 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 82.5 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 82.41 | |
| KOG0023|consensus | 360 | 82.2 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 82.16 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 82.07 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 81.95 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 81.89 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 81.82 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 81.75 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 81.49 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 81.47 | |
| PLN00106 | 323 | malate dehydrogenase | 81.42 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 81.27 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.25 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 80.87 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 80.83 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 80.67 | |
| cd06361 | 403 | PBP1_GPC6A_like Ligand-binding domain of the promi | 80.67 | |
| PF07085 | 105 | DRTGG: DRTGG domain; InterPro: IPR010766 This pres | 80.44 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 80.32 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 80.23 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 80.21 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 80.12 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 80.06 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 80.05 |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-70 Score=508.94 Aligned_cols=280 Identities=66% Similarity=1.110 Sum_probs=252.4
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.+++++.++|.|.|.+++.|....++|+++||+.++||||+..++++.|+|||++++|+|+..+||++++++|++.+++
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~ 80 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPPFAAD 80 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHHHHHH
Confidence 35688999999999999999999999999999998889999932389999999999999998424899999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
++++|.++|+|.++|+|+||++++.+++ .++|+++|+|++||||+|++||......++++..+.+|+||+|||||+++.
T Consensus 81 ~l~e~~~~gvk~avI~s~Gf~~~~~~~l-~~~a~~~girvlGPNc~Gi~~~~~~~~~~~~~~~~~~G~valiSQSGal~~ 159 (291)
T PRK05678 81 AILEAIDAGIDLIVCITEGIPVLDMLEV-KAYLERKKTRLIGPNCPGIITPGECKIGIMPGHIHKKGRVGVVSRSGTLTY 159 (291)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCCEEECCCCCcccccccceeeecCCCCCCCCCEEEEeccHHHHH
Confidence 9999999999999999999987654444 468999999999999999999987655555544567999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~ 251 (306)
++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ .+++||||+||+|||+
T Consensus 160 ~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~~~~~~KPVV~lk~Grs~ 239 (291)
T PRK05678 160 EAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYIKANVTKPVVGYIAGVTA 239 (291)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 99999999999999999999995556999999999999999999999999875 2358999999999998
Q ss_pred CCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 252 PPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 252 ~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
+.|+++||||||++++.|++.+|+++|+|+|+++++|++||+++++++|++|
T Consensus 240 ~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v~~~~el~~~~~~~~~~~ 291 (291)
T PRK05678 240 PPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVARTPSEIGELLKEVLKGL 291 (291)
T ss_pred CCCCcccchhhhccCCCCCHHHHHHHHHHCCCeECCCHHHHHHHHHHHHccC
Confidence 4577789999998666689999999999999999999999999999999876
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-69 Score=501.71 Aligned_cols=273 Identities=67% Similarity=1.109 Sum_probs=248.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++++.++|.|.|.+|+.|..+.++|..+||+++++|||+..++++.|+|||+|++|+|++.+||++++++|++.++++++
T Consensus 2 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~ 81 (286)
T TIGR01019 2 LLDKDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAPFAADAIF 81 (286)
T ss_pred eecCCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHH
Confidence 67889999999999999999999999999999999999955589999999999999998534899999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHHH
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAV 185 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~ 185 (306)
+|.++|+|.++++|+||+|.+.+++ .++|+++|+|++||||+|++||....+.++++..+.+|+||+|||||+++.+++
T Consensus 82 e~~~~Gvk~avIis~Gf~e~~~~~l-~~~a~~~girilGPNc~Giin~~~~~~~~~~~~~~~~G~ValiSQSG~l~~~~~ 160 (286)
T TIGR01019 82 EAIDAGIELIVCITEGIPVHDMLKV-KRYMEESGTRLIGPNCPGIITPGECKIGIMPGHIHKPGNVGIVSRSGTLTYEAV 160 (286)
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHH-HHHHHHcCCEEECCCCceEEcccccceeeccccCCCCCcEEEEeccHHHHHHHH
Confidence 9999999999999999998754444 468999999999999999999987655555555567999999999999999999
Q ss_pred HHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCCC
Q psy8894 186 HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPG 254 (306)
Q Consensus 186 ~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g 254 (306)
+|+.++|+|||++||+||+++.|+++.|+|+||.+||+||+|+||+|+++ ..++||||+||+|||++.|
T Consensus 161 ~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~~~~~~KPVV~lk~Grs~~~g 240 (286)
T TIGR01019 161 HQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFIKQNMSKPVVGFIAGATAPPG 240 (286)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHHHhcCCCCEEEEEecCCCCcc
Confidence 99999999999999999995556999999999999999999999999875 2278999999999997447
Q ss_pred CCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q psy8894 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299 (306)
Q Consensus 255 ~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~ 299 (306)
+++||||||+++..|++++|+++|+|+|+++++|++||+|.++..
T Consensus 241 ~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v~~~~el~d~l~~~ 285 (286)
T TIGR01019 241 KRMGHAGAIISGGKGTAESKIEALEAAGVTVVKSPSDIGELLAEI 285 (286)
T ss_pred ccccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHh
Confidence 778999999976668999999999999999999999999999865
|
ATP citrate lyases appear to form an outgroup. |
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-69 Score=501.78 Aligned_cols=283 Identities=71% Similarity=1.163 Sum_probs=258.5
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.++++++++|.|.|.+|+.|.++.+.+++||.+++++|||++.++++.|+|||+|++|+|+..+||++|+++|++.+++
T Consensus 5 ~~~~~~~~~~v~~~gi~~~~~~~~~~~~~~ygt~~~~gV~p~~~~~~i~G~~~y~sv~dlp~~~~~DlAvI~vPa~~v~~ 84 (300)
T PLN00125 5 PAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPPPFAAA 84 (300)
T ss_pred ceEEecCCCeEEEecCCCHHHHHHHHHHHHhCCcEEEEECCCCCCceEcCeeccCCHHHHhhccCCCEEEEecCHHHHHH
Confidence 57889999999999999999999999999999999999999976789999999999999998534799999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
+++||.++|+|.++++|+||+|.++++++.+++|++|+|++||||+|++||....+.+++...+++|+||+|||||+++.
T Consensus 85 al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~~~~~~~~~~~~~~~G~ValiSQSG~l~~ 164 (300)
T PLN00125 85 AILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTY 164 (300)
T ss_pred HHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCEEECCCCceeecccccceeecCCCCCCCCcEEEEeCCccHHH
Confidence 99999999999999999999999877777778999999999999999999986555555554567999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCCcEEEEEecCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGIT 250 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs 250 (306)
++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+||+|+||+|+++ .+++||||+||+|||
T Consensus 165 ~l~~~~~~~giG~S~~VS~Gn~~~adv~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~~KPVV~lk~Grs 244 (300)
T PLN00125 165 EAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGTEKPVVAFIAGLT 244 (300)
T ss_pred HHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcCCCCEEEEEecCC
Confidence 99999999999999999999998899999999999999999999999999832 356999999999999
Q ss_pred CCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhcC
Q psy8894 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 251 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~~ 305 (306)
++.|+++||||||+++..|++.+|+++|+|+|+++++|++||++.++..|+.-+|
T Consensus 245 ~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v~~~~el~~~~~~~~~~~~~ 299 (300)
T PLN00125 245 APPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVVESPAKIGVAMLEVFKERGL 299 (300)
T ss_pred CCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccC
Confidence 7448889999999755557999999999999999999999999999999887433
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-68 Score=499.77 Aligned_cols=289 Identities=73% Similarity=1.203 Sum_probs=267.2
Q ss_pred cccccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec--CeeccCCHHhhhhcCCCcEEE
Q psy8894 15 EEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~--Gip~y~sl~el~~~~~iDlav 92 (306)
++.|+++.+++++++.++|.|.|.+|+.|+++.+.+++||.++|++|||++.|+++. |+|||++++|+++++++|+++
T Consensus 14 ~~~~~~~~~~i~~~~~t~v~vqGitg~~g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~~~Gvpvy~sv~ea~~~~~~D~av 93 (317)
T PTZ00187 14 RARSSTSAPRVWVNKNTKVICQGITGKQGTFHTEQAIEYGTKMVGGVNPKKAGTTHLKHGLPVFATVKEAKKATGADASV 93 (317)
T ss_pred HHHHhccCccEEEcCCCeEEEecCCChHHHHHHHHHHHhCCcEEEEECCCCCCceEecCCccccCCHHHHhcccCCCEEE
Confidence 467999999999999999999999999999999999999999999999999889999 999999999999877799999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEE
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVG 172 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va 172 (306)
+++|++.+.++++||+++||+.++|+|+||+|.+..++++.+.+++|+|++||||+|+++|.....+.+|...+.||+||
T Consensus 94 I~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~~~~~gi~p~~~~~~G~Vg 173 (317)
T PTZ00187 94 IYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKKGKIG 173 (317)
T ss_pred EecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCCEEECCCCceEEcchhhccccCCcCCCCCCCEE
Confidence 99999999999999999999999999999999987766633335689999999999999998655555555556799999
Q ss_pred EEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCC
Q psy8894 173 VVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAK 240 (306)
Q Consensus 173 ~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~K 240 (306)
+|||||+++.++++++.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|.++ ..++|
T Consensus 174 iVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~~~~~K 253 (317)
T PTZ00187 174 IVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKNNPIKK 253 (317)
T ss_pred EEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999997779999999999999999999999999874 23689
Q ss_pred cEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 241 PVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 241 PVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
|||+||+|||++.|+++|||||+++++.|++.+|+++|+|+|++++++++||.+.++.+|+++
T Consensus 254 PVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~~~~~el~~~~~~~~~~~ 316 (317)
T PTZ00187 254 PVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVVKSPAQLGKTMLEVMKKK 316 (317)
T ss_pred cEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhc
Confidence 999999999976688999999999888899999999999999999999999999999998876
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-64 Score=493.50 Aligned_cols=261 Identities=26% Similarity=0.351 Sum_probs=235.7
Q ss_pred cCCCcEEEEEcCCCCCChHH---HHHHHHcCCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTFH---SKQAIEYGTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|.+|++|+|||+|.++++.+ .++|+++||+ .+++|||++ +++.|+|||++++|+|+. ||++++++|++.+++
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~--~~i~G~~~~~sl~~lp~~--~Dlavi~vp~~~~~~ 79 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA--GEILGVKAYPSVLEIPDP--VDLAVIVVPAKYVPQ 79 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC--CccCCccccCCHHHCCCC--CCEEEEecCHHHHHH
Confidence 55699999999998776654 6788888996 667999997 799999999999999986 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhH-----HHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLD-----MVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~-----~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
++++|.++|+|.+|++|+||+|.+ .++.+.++||++|+|++||||+|++||....+.++.+..+.+|+||+||||
T Consensus 80 ~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGPnc~G~~~~~~~l~~~~~~~~~~~G~valvsqS 159 (447)
T TIGR02717 80 VVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGPNCLGIINTHIKLNATFAPTMPKKGGIAFISQS 159 (447)
T ss_pred HHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEecCeeeEecCCCCeeeecCCCCCCCCCEEEEech
Confidence 999999999999999999999864 234445689999999999999999999876555554445679999999999
Q ss_pred hhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEE
Q psy8894 178 GTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFI 246 (306)
Q Consensus 178 G~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk 246 (306)
|+++.++++|+.++|+|||++||+||+ +|+++.|+|+||.+||+|++|++|+|+++ .+++||||+||
T Consensus 160 G~~~~~~~~~~~~~g~g~s~~vs~Gn~--~d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~aa~~a~~~KPVv~~k 237 (447)
T TIGR02717 160 GALLTALLDWAEKNGVGFSYFVSLGNK--ADIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKTAREISKKKPIVVLK 237 (447)
T ss_pred HHHHHHHHHHHHhcCCCcceEEECCch--hhCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 999999999999999999999999999 99999999999999999999999999987 34599999999
Q ss_pred ecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q psy8894 247 AGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298 (306)
Q Consensus 247 ~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~ 298 (306)
+|||+. |++ +||||+++ |++.+|+++|+|+|++++++++||+++++.
T Consensus 238 ~Grs~~-g~~aa~sHtgala----g~~~~~~a~~~~~Gv~~~~~~~el~~~~~~ 286 (447)
T TIGR02717 238 SGTSEA-GAKAASSHTGALA----GSDEAYDAAFKQAGVIRADSIEELFDLARL 286 (447)
T ss_pred cCCChh-hhhhhhhcccccc----ChHHHHHHHHHHCCeEEeCCHHHHHHHHHH
Confidence 999975 664 79999999 899999999999999999999999999974
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02522 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=424.96 Aligned_cols=275 Identities=27% Similarity=0.435 Sum_probs=234.5
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCC-------eEEEeeCCCC-------CCceecCeeccCCHHhhhhcC-CCc
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGT-------KVVGGVSPGK-------GGKTHLDLPVFNTVKEARDAT-GAE 89 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~-------~vv~~VnP~~-------~g~~i~Gip~y~sl~el~~~~-~iD 89 (306)
.++++.++..|.|. .....+.|++++| .+.+.|+|.. .|+++.|+|+|.+++|..+++ ++|
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~ 80 (608)
T PLN02522 5 QLFSRTTQALFYNY----KQLPVQRMLDFDFLCGRETPSVAGIINPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTAD 80 (608)
T ss_pred eeecCCceeEEEcC----cHHHHHhhhccceeccCCCCeeEEEEcCCCCcceeEecCCEeeCccccchHHHHHHhCCCCc
Confidence 46788888889986 4457788888766 2566689965 345778999999999999876 689
Q ss_pred EEEEecCchhHHH-HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCC-------
Q psy8894 90 ATVIYVPPPGAAK-AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIM------- 161 (306)
Q Consensus 90 lavi~vp~~~~~~-~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~------- 161 (306)
+.++|+|+..+.+ ++++|.++|||.++|+|+||+|.+..++. ++||++|+||+||||+|+++|....++..
T Consensus 81 ~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~-~~Ar~~g~rlIGPNc~Gii~p~~~kig~~~~~~~~~ 159 (608)
T PLN02522 81 VFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLI-AYARANNKVVIGPATVGGIQAGAFKIGDTAGTLDNI 159 (608)
T ss_pred EEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHH-HHHHHcCCEEECCCCCeeEccCcccccccccccccc
Confidence 9999999988766 55666668999999999999998866554 58999999999999999999986332221
Q ss_pred -CCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe-eCC----
Q psy8894 162 -PGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGE-IGG---- 235 (306)
Q Consensus 162 -~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E-~~~---- 235 (306)
++..++||+||+|||||+++.++++++.++|+|||++||+||+++.|+++.|+|+||.+||+||+|+||+| +++
T Consensus 160 ~~~~~~~pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~ 239 (608)
T PLN02522 160 IQCKLYRPGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYS 239 (608)
T ss_pred cCcCCCCCCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHH
Confidence 22345799999999999999999999999999999999999996667999999999999999999999999 765
Q ss_pred -------CCCCCcEEEEEecCCCC---CCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhc
Q psy8894 236 -------GPNAKPVVSFIAGITAP---PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLN 304 (306)
Q Consensus 236 -------~~~~KPVvvlk~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~ 304 (306)
..++||||+||+|||++ .++++|||||+++++.+++.+|+++|+|+|+++++|++||+++++.+|++|-
T Consensus 240 f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~s~~El~~~~~~~~~~~~ 318 (608)
T PLN02522 240 LVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPTSFEALEAAIKETFEKLV 318 (608)
T ss_pred HHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHHHH
Confidence 25789999999999983 3456999999997666677999999999999999999999999999999874
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=380.81 Aligned_cols=280 Identities=63% Similarity=1.036 Sum_probs=265.9
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
|++++++.+++.|.|+++++|+++.+.+++||++++++|+|+..|.++.|+|+|.+++|+.++++.|+.++|||+..+.+
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~yGt~~V~GvtPgkgG~~~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aad 80 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAYGTKIVGGVTPGKGGQTILGLPVFNTVEEAVKETGANASVIFVPPPFAAD 80 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHhCCceeecccCCCCceEEcCccHHHHHHHHHHhhCCCEEEEecCcHHHHH
Confidence 57889999999999999999999999999999999999999998999999999999999999888999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHH
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTY 182 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~ 182 (306)
.+.|++++|++.++|+|+|++..|+.++.+ .+++.+++++||||.|++.|....+++.|.+.++||+|++||.||++..
T Consensus 81 ai~EAida~i~liv~ITEgIP~~D~~~~~~-~a~~~g~~iiGPncpGiI~Pg~~kiGimp~~i~~~G~IGiVSrSGTLTy 159 (293)
T COG0074 81 AILEAIDAGIKLVVIITEGIPVLDMLELKR-YAREKGTRLIGPNCPGIITPGECKIGIMPGNIYKPGNIGIVSRSGTLTY 159 (293)
T ss_pred HHHHHHhCCCcEEEEEeCCCCHHHHHHHHH-HHHhcCCEEECCCCCccCcCCcceeeechhhhccCCceEEEecCcchHH
Confidence 999999999999999999999999877764 6899999999999999999998888888888899999999999999999
Q ss_pred HHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC------------CCCCCcEEEEEecCC
Q psy8894 183 EAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGIT 250 (306)
Q Consensus 183 ~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs 250 (306)
++...+.+.|+|+|.+|++|++.+.++++.|+|+.|.+||+|++|+|..|..+ ...+||||+|-+||+
T Consensus 160 E~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG~aEe~AA~~i~~~~~~KPVVa~iaG~t 239 (293)
T COG0074 160 EAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGGPAEEEAAEYIKANATRKPVVAYIAGRT 239 (293)
T ss_pred HHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCCcHHHHHHHHHHHhccCCCEEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999765 245699999999999
Q ss_pred CCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 251 ~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
++.|+++.|+||+.+++.|+++.+.++|+.+|+.+++++.++.+.++.+++.+
T Consensus 240 ap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~etp~~l~~~l~~vl~~~ 292 (293)
T COG0074 240 APEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVAETPAELGELLLEVLKGR 292 (293)
T ss_pred CCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeecCCHHHHHHHHHHHhhcc
Confidence 98899999999999999999999999999999999999999999999888764
|
|
| >KOG1255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-50 Score=353.91 Aligned_cols=299 Identities=75% Similarity=1.230 Sum_probs=280.2
Q ss_pred eccCCccccc---cccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhh
Q psy8894 7 RNNSSKVAEE---IYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR 83 (306)
Q Consensus 7 ~~~~~~~~~~---~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~ 83 (306)
|..++...++ .|++|+-.+.+++.++|.+.|++|+.|+++.+..++||.++|+++||+..|.+..|.|+|.|++|..
T Consensus 12 r~~~~~~~~~~~s~y~~T~~nl~ink~TkVi~QGfTGKqgTFHs~q~~eYgTk~VgG~~pkK~Gt~HLG~PVF~sV~eA~ 91 (329)
T KOG1255|consen 12 RALSLGILRVFKSLYNKTISNLKINKDTKVICQGFTGKQGTFHSQQALEYGTKVVGGVNPKKGGTTHLGLPVFNSVAEAK 91 (329)
T ss_pred hhcCcchhhhhcchhhhhhhceeecCCceEEEecccCCccceeHHHHHHhCCceeeccCCCcCcccccCchhhhhHHHHH
Confidence 3444444444 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCC
Q psy8894 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPG 163 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~ 163 (306)
++.++|.-++++||..+...++|+++.-|+.++++|+|++..|+.+....+-++...|++||||.||++|.++.++..|.
T Consensus 92 ~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPNCPGII~p~qckIGImPg 171 (329)
T KOG1255|consen 92 KETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPNCPGIINPGQCKIGIMPG 171 (329)
T ss_pred HhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCCCCCccCccceeeccccc
Confidence 98899999999999999999999999999999999999999999887777778888999999999999999999999999
Q ss_pred CCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC--------
Q psy8894 164 HIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-------- 235 (306)
Q Consensus 164 ~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-------- 235 (306)
..+.+|.|++||.||++..+..+.-.+-|+|.|.+|.+|++++.+.+|-|+|+.|.+||+|+.|+|..|..+
T Consensus 172 ~Ihk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~AEe~AA~ 251 (329)
T KOG1255|consen 172 HIHKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSAEEEAAE 251 (329)
T ss_pred ccccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChhhHHHHH
Confidence 899999999999999999999998889999999999999999999999999999999999999999999876
Q ss_pred -------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhcC
Q psy8894 236 -------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 236 -------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~~ 305 (306)
....||||-+-+|.+.++|++++|+|++.+++.|++..+.++|+.+|+++.+|+..|..++...|.++.|
T Consensus 252 flk~~nSg~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt~sPa~lG~~~~~~~~~~kl 328 (329)
T KOG1255|consen 252 FLKEYNSGSTAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVTESPAKLGSAMLEEFLKLKL 328 (329)
T ss_pred HHHHhccCCCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEEcCHHHHHHHHHHHHHhccC
Confidence 3578999999999999999999999999999999999999999999999999999999998877777764
|
|
| >COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=407.40 Aligned_cols=262 Identities=25% Similarity=0.365 Sum_probs=236.5
Q ss_pred ccCCCcEEEEEcCCCCCChHH---HHHHHHcCCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFH---SKQAIEYGTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
.+..|++|||+|+|+++++.. .++|+++| + .++||||++ +++.|++||+++.++|+. +|+++++||+..++
T Consensus 6 ~~~~p~svavigas~~~~~vg~~i~~nL~~~g-~g~i~PVnp~~--~~v~G~~ay~s~~~lp~~--~dlav~~v~~~~~~ 80 (598)
T COG1042 6 RLFAPKSIAVIGASERPGKLGYEILRNLLEYG-QGKIYPVNPKY--DEVLGVKAYTSVADLPDA--PDLAVIVVPAKVVP 80 (598)
T ss_pred hhhCCceEEEeeccCCcchhHHHHHHHHHhcC-CCceEecCccc--cccccccccchHhhCCCC--CCeeEEEechhhhH
Confidence 455699999999999988876 46778887 5 667999998 799999999999999997 99999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCChhHH-----HHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCC--CCCEEEE
Q psy8894 102 KAIHEALDAEMPLIVCITEGIPQLDM-----VKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQ--RGCVGVV 174 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~Gf~e~~~-----~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~--~G~va~v 174 (306)
+++++|.++|++.+|+++.||.|... ++.+.++|+++++|++||||+|++++..+.+.++.+.... +|+++|+
T Consensus 81 ~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~rligPn~~G~~~~~~glna~f~p~~~~~~~g~~afv 160 (598)
T COG1042 81 EIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMRIIGPNCLGLINPIIGLNATFDPVFGLGRGGGGAFV 160 (598)
T ss_pred HHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCceEeccccccccccccccccccCcccccccCCCeEEE
Confidence 99999999999999999999987642 3333347899999999999999999987765666554455 8999999
Q ss_pred ecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEE
Q psy8894 175 SRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVV 243 (306)
Q Consensus 175 SqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVv 243 (306)
||||+++..+++|+.+.++|+|+++|.||. +|+++.|+++||.+|+.|++|.||+|++. .+++||+|
T Consensus 161 sqsgav~~~il~~~~~~~~g~s~~vs~gn~--ad~~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~kpii 238 (598)
T COG1042 161 SQSGAVSFAILDWANEDGMGFSIKVSLGNA--ADRDESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKKPII 238 (598)
T ss_pred EechHHHHhccchhhhcCCceeEEEeecch--hhcCchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999 99999999999999999999999999986 36889999
Q ss_pred EEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHH
Q psy8894 244 SFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299 (306)
Q Consensus 244 vlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~ 299 (306)
++|+||+.. +++ .||||+++ |++.+|+++|+|+|++++.+++||++.++++
T Consensus 239 ~lk~gr~~~-~akAa~shTgsla----g~~~~y~Aa~~~agvir~~~~~elf~~~k~l 291 (598)
T COG1042 239 ALKAGRSEA-GAKAAASHTGSLA----GSDEAYDAAFKQAGVIRVESIEELFDAAKAL 291 (598)
T ss_pred EEeccCCHH-HHHHHhccccccc----ccchhhHHHHHhhCceeccChHHHHHHHHHh
Confidence 999999986 654 69999999 8999999999999999999999999999965
|
|
| >PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=272.86 Aligned_cols=124 Identities=31% Similarity=0.454 Sum_probs=88.7
Q ss_pred CCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------C
Q psy8894 168 RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------G 236 (306)
Q Consensus 168 ~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~ 236 (306)
||+||+|||||+++..+++++.++|+|||++||+||+ +|+++.|+|+||.+||+|++|++|+|+++ .
T Consensus 1 ~G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~--~dv~~~d~l~~~~~D~~t~~I~ly~E~~~d~~~f~~~~~~a 78 (138)
T PF13607_consen 1 PGGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNE--ADVDFADLLEYLAEDPDTRVIVLYLEGIGDGRRFLEAARRA 78 (138)
T ss_dssp E-SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT---SSS-HHHHHHHHCT-SS--EEEEEES--S-HHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCcc--ccCCHHHHHHHHhcCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999997 3
Q ss_pred CCCCcEEEEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q psy8894 237 PNAKPVVSFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298 (306)
Q Consensus 237 ~~~KPVvvlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~ 298 (306)
++.||||+||+|||+. |++ .||||+++ |++.+|+++|+|+|+++++|++||++++++
T Consensus 79 ~~~KPVv~lk~Grt~~-g~~aa~sHTgsla----g~~~~~~a~~~~aGv~~v~~~~el~~~~~~ 137 (138)
T PF13607_consen 79 ARRKPVVVLKAGRTEA-GARAAASHTGSLA----GDDAVYDAALRQAGVVRVDDLDELLDAAKA 137 (138)
T ss_dssp CCCS-EEEEE--------------------------HHHHHHHHHHCTEEEESSHHHHHHHHCC
T ss_pred hcCCCEEEEeCCCchh-hhhhhhccCCccc----CcHHHHHHHHHHcCceEECCHHHHHHHHHh
Confidence 4559999999999986 654 79999999 899999999999999999999999999863
|
|
| >PRK06091 membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=309.38 Aligned_cols=198 Identities=22% Similarity=0.297 Sum_probs=163.0
Q ss_pred eeccCCHHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 73 LPVFNTVKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 73 ip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
.|.|+++.++.+. .++|++++++|++.+++.+++|+++| +.+++||.||+.+...+ +.++|+++|+|++|||| |+.
T Consensus 102 ~~~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G-~~viI~S~gfg~~~E~~-L~e~Ar~~GlrvmGPNC-G~~ 178 (555)
T PRK06091 102 LTQVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRN-LNVMMFSDNVTLEDEIR-LKTRAREKGLLVMGPDC-GTA 178 (555)
T ss_pred CcccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcC-CeEEEEcCCCCHHHHHH-HHHHHHHcCCEEECCCC-hhh
Confidence 4455555444332 13799999999999999999999999 55788999997554444 45689999999999999 766
Q ss_pred cCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCC----CCCCHHHHHHHhhcCCCccEE
Q psy8894 152 APEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF----NGTNFIDCLEVFLKDPETKGI 227 (306)
Q Consensus 152 ~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~----~dv~~~d~l~~l~~D~~t~~I 227 (306)
+. .+...+|. ...++|+||+|||||+++.+++.|+.++|+|||++||+||+.+ .|+++.|+|+||.+||+|++|
T Consensus 179 ~i-~gl~lsF~-~~~~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvI 256 (555)
T PRK06091 179 MI-AGTPLAFA-NVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVI 256 (555)
T ss_pred hh-cCCccccc-CCCCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEE
Confidence 63 23222333 2346999999999999999999999999999999999999932 288999999999999999999
Q ss_pred EEEE----eeCC-------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHH
Q psy8894 228 ILIG----EIGG-------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNEL 296 (306)
Q Consensus 228 ~ly~----E~~~-------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~ 296 (306)
++|+ |+++ ++.+||||++|+||++. +. +|+|++++++++|+++.+
T Consensus 257 vly~kppaE~v~~~fl~aar~~~KPVVvlk~Grs~~----------------g~--------~q~GVi~a~tleEl~~~A 312 (555)
T PRK06091 257 AFVSKPPAEAVRLKIINAMKATGKPVVALFLGYTPA----------------VA--------RDENVWFASTLDEAARLA 312 (555)
T ss_pred EEEEecCchHHHHHHHHHHhhCCCCEEEEEecCCch----------------hh--------hcCCeEEeCCHHHHHHHH
Confidence 9999 7775 35699999999999974 22 999999999999999999
Q ss_pred HHH
Q psy8894 297 LKE 299 (306)
Q Consensus 297 ~~~ 299 (306)
.++
T Consensus 313 ~~l 315 (555)
T PRK06091 313 CLL 315 (555)
T ss_pred HHH
Confidence 753
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-24 Score=174.24 Aligned_cols=113 Identities=22% Similarity=0.415 Sum_probs=85.9
Q ss_pred cEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
++|||+|+|.++++++ +++|++.|++++ +|||+. +++.|+++|++++|.|+. +|++++++|++.+.+++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~-~Vnp~~--~~i~G~~~y~sl~e~p~~--iDlavv~~~~~~~~~~v~~~ 75 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVY-PVNPKG--GEILGIKCYPSLAEIPEP--IDLAVVCVPPDKVPEIVDEA 75 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEE-EESTTC--SEETTEE-BSSGGGCSST---SEEEE-S-HHHHHHHHHHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEE-EECCCc--eEECcEEeeccccCCCCC--CCEEEEEcCHHHHHHHHHHH
Confidence 5899999999988876 467777899875 999997 899999999999997765 99999999999999999999
Q ss_pred HHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 108 LDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 108 ~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
.++|++.+|+ .+|-.++ ++ .++|+++|++++||||+|+++|
T Consensus 76 ~~~g~~~v~~-~~g~~~~---~~-~~~a~~~gi~vigp~C~gv~~~ 116 (116)
T PF13380_consen 76 AALGVKAVWL-QPGAESE---EL-IEAAREAGIRVIGPNCLGVVNP 116 (116)
T ss_dssp HHHT-SEEEE--TTS--H---HH-HHHHHHTT-EEEESS-HHHHHT
T ss_pred HHcCCCEEEE-EcchHHH---HH-HHHHHHcCCEEEeCCcceEEcC
Confidence 9999999995 6662222 22 2478999999999999999875
|
|
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=161.23 Aligned_cols=129 Identities=17% Similarity=0.218 Sum_probs=114.0
Q ss_pred cccccccccccCCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 17 IYAATRPNLRLTSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi 93 (306)
.++++.+...+++.++|||||+|.++.+.. .+.|++.||+++ ||||+..|+++.|.++|+||+|+|++ +|++.+
T Consensus 3 ~~~~~~i~~iL~~~K~IAvVG~S~~P~r~sy~V~kyL~~~GY~Vi-PVNP~~~~~eiLG~k~y~sL~dIpe~--IDiVdv 79 (140)
T COG1832 3 NPEEEDIAEILKSAKTIAVVGASDKPDRPSYRVAKYLQQKGYRVI-PVNPKLAGEEILGEKVYPSLADIPEP--IDIVDV 79 (140)
T ss_pred CccHHHHHHHHHhCceEEEEecCCCCCccHHHHHHHHHHCCCEEE-eeCcccchHHhcCchhhhcHHhCCCC--CcEEEE
Confidence 466777788899999999999999998876 468999999997 99999888999999999999999987 999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
|.+++.++++++++++.|++.+| ++.|...++.. +.+++.|+.++-..|+.+-.+
T Consensus 80 FR~~e~~~~i~~eal~~~~kv~W-~QlGi~n~ea~----~~~~~aG~~vV~nrCi~~E~~ 134 (140)
T COG1832 80 FRRSEAAPEVAREALEKGAKVVW-LQLGIRNEEAA----EKARDAGLDVVMDRCIMIEHP 134 (140)
T ss_pred ecChhhhHHHHHHHHhhCCCeEE-EecCcCCHHHH----HHHHHhCcHHHHHhhHHHHHh
Confidence 99999999999999999999988 79998765533 357899999999999876544
|
|
| >KOG1254|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=150.06 Aligned_cols=231 Identities=29% Similarity=0.406 Sum_probs=189.3
Q ss_pred CeeccCCHHhhhhcC-CCcEEEEecCchhHHHHHHHHHHcC-CCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 72 DLPVFNTVKEARDAT-GAEATVIYVPPPGAAKAIHEALDAE-MPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 72 Gip~y~sl~el~~~~-~iDlavi~vp~~~~~~~~~e~~~~G-i~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
=+|+|+++.+...+| ..|+-+=+.....+.+--.++.+.| ++.+-++++|.+|.+..++. ..+++.+..++||-+.|
T Consensus 54 ~IPv~~t~~~a~~~hp~~dv~~~faS~rsv~k~~m~~~k~~ki~lvAiiAegvpe~~~~kl~-~~a~~k~~~iiGPaTvg 132 (600)
T KOG1254|consen 54 LIPVEKTMENALVEHPEADVEPWFASTRSVAKPDMLALKRGKIGLVAIIAEGVPEADTRKLR-AGAEVKGVGIIGPATVG 132 (600)
T ss_pred EeechhhHHHHHhcCcccceeechhhhhhhhcchHHHhhcCcceEEEEEecCCcHHHHHHHH-hccccccceEEeeeeec
Confidence 378999876665442 4667666777777777777777765 88888899999998876654 35788899999999999
Q ss_pred eecCccccccCC--------CCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 150 IIAPEQCKIGIM--------PGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 150 i~~~~~~~~~~~--------~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
.+.|....++.. .....+||.+++||.||+|..++.+.-.+.-.|....+.+|++++.+.++.|.+..+.+|
T Consensus 133 gVePg~fkignt~g~~dnil~~klyR~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~ 212 (600)
T KOG1254|consen 133 GVEPGVFKIGNTGGMMDNILNSKLYRPGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHD 212 (600)
T ss_pred cccCCccccCCCCcchhhhhhhcccCCccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhcc
Confidence 999976433211 113479999999999999999998777777789999999999999999999999999999
Q ss_pred CCccEEEEEEeeCC------------CCCCCcEEEEEecCCCC---CCCCccCCcccccCCCCCHHHHHHHHHHcCCeEe
Q psy8894 222 PETKGIILIGEIGG------------GPNAKPVVSFIAGITAP---PGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT 286 (306)
Q Consensus 222 ~~t~~I~ly~E~~~------------~~~~KPVvvlk~Grs~~---~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~ 286 (306)
|.++.|++..|-.+ ....||+|+|..|.++. ...++.|.|+.|......+.+.+++++.+|+.+.
T Consensus 213 ~~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vp 292 (600)
T KOG1254|consen 213 PLVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVP 292 (600)
T ss_pred ChhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCc
Confidence 99999999988776 46789999999999753 2346899999996554577788999999999999
Q ss_pred CCHhHHHHHHHHHHHhh
Q psy8894 287 RSPAQMGNELLKEMKRL 303 (306)
Q Consensus 287 ~~~~el~~~~~~~~~~~ 303 (306)
+++++|.+.++..|+.|
T Consensus 293 esf~~l~~~i~~~~e~l 309 (600)
T KOG1254|consen 293 ESFDALGADIQETYEFL 309 (600)
T ss_pred cchhhhhhhhccchhcc
Confidence 99999999988777654
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=120.41 Aligned_cols=93 Identities=28% Similarity=0.351 Sum_probs=79.3
Q ss_pred CCCcEEEEEcCCCCCChHHH-HHHHHcCCeE--EEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHS-KQAIEYGTKV--VGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~-~~l~~~g~~v--v~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
|++++++|+|+ |+.|+... ..+...||++ ++.+||+..|+++.|+|+|.+++++.+..++|++++++|++.+++++
T Consensus 1 nk~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~ 79 (96)
T PF02629_consen 1 NKKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVA 79 (96)
T ss_dssp CTTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHH
T ss_pred CCCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHH
Confidence 57899999999 88988764 4445557764 44599998899999999999999999866699999999999999999
Q ss_pred HHHHHcCCCEEEEecCC
Q psy8894 105 HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G 121 (306)
+++++.|||.+|+||+|
T Consensus 80 ~~~~~~gIk~i~nft~~ 96 (96)
T PF02629_consen 80 DELVEAGIKGIVNFTPG 96 (96)
T ss_dssp HHHHHTT-SEEEEESSS
T ss_pred HHHHHcCCCEEEEeCCC
Confidence 99999999999999986
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=110.86 Aligned_cols=111 Identities=25% Similarity=0.413 Sum_probs=85.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCC---CCce--------ecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGK---GGKT--------HLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~---~g~~--------i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.||+|+|++||||+.+.+.+.+ .++++++.++++. .|+. ..|++++.+++++.+. +|++|+|+.|+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence 4799999999999999998888 5999998888765 2222 3578999999999987 99999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
.+.+.++.|+++|++.|+ .|+||++++.+++. +++++.+ -++.||
T Consensus 79 ~~~~~~~~~~~~g~~~Vi-GTTG~~~~~~~~l~-~~a~~~~-vl~a~N 123 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVI-GTTGFSDEQIDELE-ELAKKIP-VLIAPN 123 (124)
T ss_dssp HHHHHHHHHHHHT-EEEE-E-SSSHHHHHHHHH-HHTTTSE-EEE-SS
T ss_pred HhHHHHHHHHhCCCCEEE-ECCCCCHHHHHHHH-HHhccCC-EEEeCC
Confidence 999999999999999654 89999887766554 4555522 555676
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-13 Score=118.15 Aligned_cols=98 Identities=23% Similarity=0.308 Sum_probs=85.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHH--HHHHHcCCeEEEe--eCCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCc
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHS--KQAIEYGTKVVGG--VSPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~--~~l~~~g~~vv~~--VnP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.+..++.+++++||+ |++|++.. +...++|+++++. +||+..|.++.++|+|. +|++...++++|++++|||+
T Consensus 78 ~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 78 LLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred HhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 457889999999999 99999874 5677889998877 88988899999999998 35555555689999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
+.++++++.++++|||+||+||+.-
T Consensus 157 ~~AQ~vad~Lv~aGVkGIlNFtPv~ 181 (211)
T COG2344 157 EHAQEVADRLVKAGVKGILNFTPVR 181 (211)
T ss_pred HHHHHHHHHHHHcCCceEEeccceE
Confidence 9999999999999999999999843
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=112.71 Aligned_cols=119 Identities=22% Similarity=0.354 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC-CC--CCc---ee-----cCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP-GK--GGK---TH-----LDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP-~~--~g~---~i-----~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.+|+|+|++|+||+.+.+.+.+. ++++++.+++ .. .+. ++ .|+++|.+++++.. .+|++|+|+||+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~--~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVET--DPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcC--CCCEEEECCChH
Confidence 48999998899999999988874 9999988883 21 111 11 36889999999943 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
.+.+.++.|+++|++.+ +.|+|+++++.+++. ++|++.|+ -+++||. +|+...
T Consensus 80 ~~~~~~~~al~~g~~vV-igttg~~~e~~~~l~-~aA~~~g~~v~~a~NfSlGv~ll 134 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLV-VGTTGFSEEDKQELA-DLAEKAGIAAVIAPNFSIGVNLM 134 (266)
T ss_pred HHHHHHHHHHHCCCCEE-EECCCCCHHHHHHHH-HHHhcCCccEEEECcccHHHHHH
Confidence 99999999999999964 579999988776665 57888887 5557886 566554
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=110.80 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-----------CceecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-----------GKTHLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-----------g~~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.+|+|+|++||||+.+.+.+.+. ++++++.++.... |....|+|+++++.....+ +|++|+|+.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~--~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKAD--ADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccC--CCEEEECCCc
Confidence 468999999999999999988876 7898888775531 1245688999986666554 9999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-CceecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIAP 153 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~~ 153 (306)
+.+.+.++.|.++|++.|+ .||||++++.+++. +++++.+ -++.||. +|+.-.
T Consensus 80 ~~~~~~l~~~~~~~~~lVI-GTTGf~~e~~~~l~-~~a~~v~-vv~a~NfSiGvnll 133 (266)
T COG0289 80 EATLENLEFALEHGKPLVI-GTTGFTEEQLEKLR-EAAEKVP-VVIAPNFSLGVNLL 133 (266)
T ss_pred hhhHHHHHHHHHcCCCeEE-ECCCCCHHHHHHHH-HHHhhCC-EEEeccchHHHHHH
Confidence 9999999999999999765 89999999877664 4666643 5667885 676553
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.7e-11 Score=111.56 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=97.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec------Ceecc--CCHHhhhhcC---CCc-EEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL------DLPVF--NTVKEARDAT---GAE-ATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~------Gip~y--~sl~el~~~~---~iD-lavi~vp~ 97 (306)
..+|+|.|+.||||+.+.+.+.+.++++++.++++..|+.+. ++++| .+++++.... .+| ++|+|+.|
T Consensus 11 ~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P 90 (286)
T PLN02775 11 AIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLP 90 (286)
T ss_pred CCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCCh
Confidence 458999999999999999988889999998899877555332 68899 8888888543 589 89999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
+.+.+.++.|+++|++.|+ .||||++++..+ ++++.++ -++.||. +|++..
T Consensus 91 ~a~~~~~~~~~~~g~~~Vv-GTTG~~~e~l~~----~~~~~~i~vv~apNfSiGv~ll 143 (286)
T PLN02775 91 DAVNDNAELYCKNGLPFVM-GTTGGDRDRLLK----DVEESGVYAVIAPQMGKQVVAF 143 (286)
T ss_pred HHHHHHHHHHHHCCCCEEE-ECCCCCHHHHHH----HHhcCCccEEEECcccHHHHHH
Confidence 9999999999999999765 899999886443 4555566 7778986 576654
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=105.16 Aligned_cols=119 Identities=17% Similarity=0.255 Sum_probs=92.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+.+|+|+|++|+||+.+.+.+.+. ++++++.+++..... ...|++.|.+++++.++ +|++++|+||+.+.+.++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~--~DvVid~t~p~~~~~~~~ 78 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLAD--ADVLIDFTTPEATLENLE 78 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccC--CCEEEECCCHHHHHHHHH
Confidence 368999999999999999888775 899988887654111 23467889999998764 999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-CceecC
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIAP 153 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~~ 153 (306)
.|+++|++.++ .|+|+++++.+++.+ .+++.+ .++.||. +|+...
T Consensus 79 ~al~~G~~vvi-gttG~s~~~~~~l~~-aa~~~~-v~~s~n~s~g~~~~ 124 (257)
T PRK00048 79 FALEHGKPLVI-GTTGFTEEQLAELEE-AAKKIP-VVIAPNFSIGVNLL 124 (257)
T ss_pred HHHHcCCCEEE-ECCCCCHHHHHHHHH-HhcCCC-EEEECcchHHHHHH
Confidence 99999999764 699999888776654 444444 5556776 455443
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=103.42 Aligned_cols=116 Identities=18% Similarity=0.242 Sum_probs=93.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCce---ec--Ceec------cCCHHhhhhcCCCc-EEEEecCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKT---HL--DLPV------FNTVKEARDATGAE-ATVIYVPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~---i~--Gip~------y~sl~el~~~~~iD-lavi~vp~~ 98 (306)
+|+|.|+.|+||+.+.+.+.+.++++++. ++++..++. +. ++|+ |.+++++.+. .+| ++|+|+.|+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCChH
Confidence 69999999999999999888889999977 887754432 22 6788 8899998853 488 999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-CceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi~~~ 153 (306)
.+.+.++.|.++|++.|+ .|+|+++++.+++ +++.++ .++.||. +|++..
T Consensus 81 ~~~~n~~~~~~~gv~~Vi-GTTG~~~~~~~~l----~~~~~i~~l~apNfSiGv~ll 132 (275)
T TIGR02130 81 AVNDNAAFYGKHGIPFVM-GTTGGDREALAKL----VADAKHPAVIAPNMAKQIVAF 132 (275)
T ss_pred HHHHHHHHHHHCCCCEEE-cCCCCCHHHHHHH----HHhcCCCEEEECcccHHHHHH
Confidence 999999999999999765 8999998876654 333445 7778996 676653
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-09 Score=83.66 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=84.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
||+|||+ |+.|+...+.+++. ++++++.++|+.... +..|+++|.|++++.+..++|++++++|+..+.+.++
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 7999999 88898888777765 778888888874111 2468999999999998667999999999999999999
Q ss_pred HHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 106 EALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+|+++|++ +++=-+ ..+.++.+++. ++++++|..+
T Consensus 81 ~~l~~g~~-v~~EKP~~~~~~~~~~l~-~~a~~~~~~~ 116 (120)
T PF01408_consen 81 KALEAGKH-VLVEKPLALTLEEAEELV-EAAKEKGVKV 116 (120)
T ss_dssp HHHHTTSE-EEEESSSSSSHHHHHHHH-HHHHHHTSCE
T ss_pred HHHHcCCE-EEEEcCCcCCHHHHHHHH-HHHHHhCCEE
Confidence 99999995 565333 23455556655 5788888654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=91.47 Aligned_cols=119 Identities=16% Similarity=0.108 Sum_probs=88.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---e-e-cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---T-H-LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---~-i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.||+|+|+ |++|+.+.+.+.+. ++++++.+++..... + . .++++|.+++++ . .++|++++|+|+..+.+.+
T Consensus 2 ~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~-~~~DvVve~t~~~~~~e~~ 78 (265)
T PRK13303 2 MKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-P-QRPDLVVECAGHAALKEHV 78 (265)
T ss_pred cEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-c-cCCCEEEECCCHHHHHHHH
Confidence 58999999 99999999988876 778776654432111 1 1 267899999999 3 3599999999999999999
Q ss_pred HHHHHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEE-ccCCCceecC
Q psy8894 105 HEALDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAP 153 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~ 153 (306)
.+++++|++.+ +.++| +++.+..+.+.++|++.|.++. -|.+.|.++.
T Consensus 79 ~~aL~aGk~Vv-i~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~ 128 (265)
T PRK13303 79 VPILKAGIDCA-VISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDA 128 (265)
T ss_pred HHHHHcCCCEE-EeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHH
Confidence 99999999865 46777 4545444445568999997544 4555666553
|
|
| >PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=81.06 Aligned_cols=110 Identities=37% Similarity=0.499 Sum_probs=88.3
Q ss_pred EecChhhHHHHHHHHHhC--------------CCceEEEEecCCCCCC---------CCCHHHHHHHhhcCCCccEEEEE
Q psy8894 174 VSRSGTLTYEAVHQTTQV--------------GLGQTLCVGIGGDPFN---------GTNFIDCLEVFLKDPETKGIILI 230 (306)
Q Consensus 174 vSqSG~~~~~~~~~~~~~--------------g~g~s~~vs~Gn~~~~---------dv~~~d~l~~l~~D~~t~~I~ly 230 (306)
++.||+|+.+.++.+... +.+.+.++-+|.+.+. .....|.|+.+.+||+|++|++-
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 578999999999999999 9999999999999754 67899999999999999999999
Q ss_pred EeeC-C---------------CC---CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhH
Q psy8894 231 GEIG-G---------------GP---NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQ 291 (306)
Q Consensus 231 ~E~~-~---------------~~---~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~e 291 (306)
+|.. + .. +.||||++-.|+.+.+...+.| ..+|+++|+..+.+-++
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~---------------~~~L~~~G~~v~~s~~~ 145 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQ---------------AGALEDAGVIVAESNAQ 145 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHH---------------HHHHHCTTCSCHHHHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHH---------------HHHHHhCCCcccccHHH
Confidence 9976 4 23 6889999999998754443444 35677777777777666
Q ss_pred HHHHHHH
Q psy8894 292 MGNELLK 298 (306)
Q Consensus 292 l~~~~~~ 298 (306)
-...+.+
T Consensus 146 A~~~A~a 152 (153)
T PF00549_consen 146 AARAAGA 152 (153)
T ss_dssp HHHHHTH
T ss_pred HHHHcCC
Confidence 6555543
|
2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A .... |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.8e-08 Score=85.77 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=75.6
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHH--HHcCCeEEEeeCC--CCCCceecCeeccC--CHHhhhhcCCCcEEEEecCch
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQA--IEYGTKVVGGVSP--GKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l--~~~g~~vv~~VnP--~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~~ 98 (306)
+.+++.++|+|+|+ |+.|+...+.+ .+.|+++++.+|+ ...+..+.|+|++. +++++..++++|.+++++|..
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 45567789999999 99998877643 3469998888764 44445677888764 466665555799999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
...++.+.+.+.|++.+|+|++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCc
Confidence 9999999999999999999876
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-07 Score=86.47 Aligned_cols=111 Identities=9% Similarity=0.144 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+|+|+|+ |++|+...+.+.+. ++++++.+|++... + +..|.+.|.+++++.. ++|++++|+|++.+.+.+
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~--~~DvVvi~a~~~~~~~~~ 78 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVE--DVDLVVECASVNAVEEVV 78 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhc--CCCEEEEcCChHHHHHHH
Confidence 48999999 99999998888775 57888888876411 1 2346788999999984 499999999999999999
Q ss_pred HHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
++++++|.+. ++.++|. .+.+..+.+.++|+++|.++.-|
T Consensus 79 ~~al~~Gk~V-vv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~ 119 (265)
T PRK13304 79 PKSLENGKDV-IIMSVGALADKELFLKLYKLAKENNCKIYLP 119 (265)
T ss_pred HHHHHcCCCE-EEEchHHhcCHHHHHHHHHHHHHcCCEEEEe
Confidence 9999999885 4467654 23333334446899999877644
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.8e-07 Score=87.24 Aligned_cols=111 Identities=16% Similarity=0.158 Sum_probs=82.2
Q ss_pred CCcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++.+|+|||+ |.+|+ .+.+.+.+. ++++++..+++.. .....+.++|.+++++.+..++|++++++|+..+.+.+
T Consensus 3 ~~irvgiiG~-G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~ 81 (346)
T PRK11579 3 DKIRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLA 81 (346)
T ss_pred CcceEEEECC-CHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4579999999 88887 456666664 8899888887641 11233677999999998765799999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+|+++|.+ |++==+ ..+.++..++. ++|++.|+.+
T Consensus 82 ~~al~aGkh-Vl~EKPla~t~~ea~~l~-~~a~~~g~~l 118 (346)
T PRK11579 82 KAALEAGKH-VVVDKPFTVTLSQARELD-ALAKSAGRVL 118 (346)
T ss_pred HHHHHCCCe-EEEeCCCCCCHHHHHHHH-HHHHHhCCEE
Confidence 999999977 454111 22444555554 5788888754
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.1e-07 Score=82.58 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=85.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--cCCeEEEeeCCCCCCc----eecC-eeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--YGTKVVGGVSPGKGGK----THLD-LPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--~g~~vv~~VnP~~~g~----~i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+.+|+|+|+ |++|+.+.+.+.+ .++++++..++..... +..| .+.|.+++++..+ +|++++++|.+.+.+
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~--~D~Vvi~tp~~~h~e 82 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATH--ADIVVEAAPASVLRA 82 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcC--CCEEEECCCcHHHHH
Confidence 589999999 9999999998886 3788877777754111 1224 3678999999865 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeE-EccCCCcee
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRL-IGPNCPGII 151 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~i-iGPNc~Gi~ 151 (306)
.++.++++|.+. ++.+.|-- .+.+++. ++++++|.++ ++|..++-+
T Consensus 83 ~~~~aL~aGk~V-i~~s~gal-~~~~~L~-~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 83 IVEPVLAAGKKA-IVLSVGAL-LRNEDLI-DLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred HHHHHHHcCCcE-EEecchhH-HhHHHHH-HHHHHcCCEEEEcchHHHhH
Confidence 999999999875 44555521 2233443 5789999877 555554333
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=82.82 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=83.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.||+|+|+ |++|+.+.+.+++. ++++++.++++.....-.++++|. +.+++.. ++|++++|+|+....+.+..
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~--~iDVViIctPs~th~~~~~~ 79 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLD--DVDVLILCMGSATDIPEQAP 79 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhcc--CCCEEEEcCCCccCHHHHHH
Confidence 479999999 99999988888776 899998877763111112344454 4555544 49999999999999999999
Q ss_pred HHHcCCCEEEEecCCCChhHHHHHHHHHHHh-cCCeEEccCC-Cceec
Q psy8894 107 ALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ-SKSRLIGPNC-PGIIA 152 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~-~gi~iiGPNc-~Gi~~ 152 (306)
++++|++.|-.+-+.....+..+.+.++|++ .++.+++-.. .|+++
T Consensus 80 ~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~s 127 (324)
T TIGR01921 80 YFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFS 127 (324)
T ss_pred HHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHH
Confidence 9999999765443333223344455567887 5688887221 45444
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-06 Score=81.02 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=83.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCc----eecCee-ccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGK----THLDLP-VFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~----~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
++.+|+|||+.+-.++.+...+.+.+ +++++.++++.... +..|++ +|.+++++.+..++|+++|++|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 46899999993344566777888764 68888877765211 345774 999999999876699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCC---CChhHHHHHHHHHHHhcCCe-EEccC
Q psy8894 102 KAIHEALDAEMPLIVCITEG---IPQLDMVKVKHRLIRQSKSR-LIGPN 146 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~G---f~e~~~~~~~~~~ar~~gi~-iiGPN 146 (306)
+++..|+++|++ |+| +. .+.++.+++. ++|+++|+. .+|-|
T Consensus 82 e~~~~AL~aGkh-Vl~--EKPla~t~~ea~~l~-~~a~~~~~~l~v~~~ 126 (342)
T COG0673 82 ELALAALEAGKH-VLC--EKPLALTLEEAEELV-ELARKAGVKLMVGFN 126 (342)
T ss_pred HHHHHHHhcCCE-EEE--cCCCCCCHHHHHHHH-HHHHHcCCceeeehh
Confidence 999999999997 454 42 2344555554 578888863 34444
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.2e-06 Score=79.69 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=81.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEec----Cch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYV----PPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~v----p~~ 98 (306)
++.+|+|+|+ .+|+...+.+.+. ++++++.++++.... +..|++.|.+++|++++ +|++++++ |+.
T Consensus 2 ~~~rVgViG~--~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d--~Di~~V~ipt~~P~~ 77 (343)
T TIGR01761 2 DVQSVVVCGT--RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDD--IDIACVVVRSAIVGG 77 (343)
T ss_pred CCcEEEEEeH--HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcC--CCEEEEEeCCCCCCc
Confidence 5689999998 4788888888774 689998888864211 24589999999999975 77777776 457
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+++.+|+++|++ |++ --=+..++.+++. ++|+++|+.+.
T Consensus 78 ~H~e~a~~aL~aGkH-VL~-EKPla~~Ea~el~-~~A~~~g~~l~ 119 (343)
T TIGR01761 78 QGSALARALLARGIH-VLQ-EHPLHPRDIQDLL-RLAERQGRRYL 119 (343)
T ss_pred cHHHHHHHHHhCCCe-EEE-cCCCCHHHHHHHH-HHHHHcCCEEE
Confidence 899999999999987 454 2223344555555 57899998766
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-06 Score=78.84 Aligned_cols=110 Identities=11% Similarity=0.083 Sum_probs=78.6
Q ss_pred cEEEEEcCCCCCC-hHHHHHHHH--cCCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQG-TFHSKQAIE--YGTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G-~~~~~~l~~--~g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.||+|||+ |+.+ +.+...++. .++++++..++..... ...+++.|.+++++.+..++|++++++|+..+.+.
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 58999999 8754 445565544 3788888877753111 12347899999999976679999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.+|+++|++ |+|==+ ..+.++.+++. ++|+++|+.+.
T Consensus 81 ~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~~~~l~ 119 (344)
T PRK10206 81 AKRALEAGKN-VLVEKPFTPTLAEAKELF-ALAKSKGLTVT 119 (344)
T ss_pred HHHHHHcCCc-EEEecCCcCCHHHHHHHH-HHHHHhCCEEE
Confidence 9999999976 555112 22344555554 57899997653
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00017 Score=71.76 Aligned_cols=242 Identities=16% Similarity=0.156 Sum_probs=147.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~~~~~ 103 (306)
.++.+|+++.-||.++......+.+.|+..-..|+-.. +. ++..-+-++-+.++.+.++++++.-. ....+.
T Consensus 148 ~~~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn--~~--d~~~~d~l~~l~~D~~t~~I~ly~E~~~~~~~f~~a 223 (447)
T TIGR02717 148 PKKGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGN--KA--DIDESDLLEYLADDPDTKVILLYLEGIKDGRKFLKT 223 (447)
T ss_pred CCCCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCc--hh--hCCHHHHHHHHhhCCCCCEEEEEecCCCCHHHHHHH
Confidence 34678999999988887777776666444333444432 11 11111112333333357888887553 445556
Q ss_pred HHHHHHcCCCEEEEecCCCChhHH-------------HHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDM-------------VKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGC 170 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~-------------~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~ 170 (306)
++.+.+ +.+ |+++-.|-++.+. .+..+.+.|+.|+..+ -+.--+++... ..... ..++-.+
T Consensus 224 a~~a~~-~KP-Vv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~-~~~~el~~~~~-~l~~~--~~~~g~r 297 (447)
T TIGR02717 224 AREISK-KKP-IVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA-DSIEELFDLAR-LLSNQ--PLPKGNR 297 (447)
T ss_pred HHHHcC-CCC-EEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe-CCHHHHHHHHH-HHhcC--CCCCCCe
Confidence 666643 555 5557777776542 1233345677775333 11112222111 11111 1234457
Q ss_pred EEEEecChhhHHHHHHHHHhCCCceEE---------------EEecCCCCCCCC-------CHHHHHHHhhcCCCccEEE
Q psy8894 171 VGVVSRSGTLTYEAVHQTTQVGLGQTL---------------CVGIGGDPFNGT-------NFIDCLEVFLKDPETKGII 228 (306)
Q Consensus 171 va~vSqSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~~dv-------~~~d~l~~l~~D~~t~~I~ 228 (306)
|++||-||+.+..+.+.+.+.|+-+-. ..+.+|- .|+ .+.+.++.+.+||++.+++
T Consensus 298 vaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NP--lDl~~~~~~~~~~~al~~l~~dp~vd~Vl 375 (447)
T TIGR02717 298 VAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNP--VDVLGDATPERYAKALKTVAEDENVDGVV 375 (447)
T ss_pred EEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCC--EecCCCCCHHHHHHHHHHHHcCCCCCEEE
Confidence 999999999999999999999987662 3566665 444 4578899999999999988
Q ss_pred EEEeeCC---------------CC-CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q psy8894 229 LIGEIGG---------------GP-NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQM 292 (306)
Q Consensus 229 ly~E~~~---------------~~-~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el 292 (306)
+.+-... .+ .+|||++.-.|-. ..+.....|+++|+...+++++-
T Consensus 376 v~~~~~~~~~~~~~a~~l~~~~~~~~~KPvv~~~~gg~-------------------~~~~~~~~L~~~Gip~f~~p~~A 436 (447)
T TIGR02717 376 VVLTPTAMTDPEEVAKGIIEGAKKSNEKPVVAGFMGGK-------------------SVDPAKRILEENGIPNYTFPERA 436 (447)
T ss_pred EEccCCccCCHHHHHHHHHHHHHhcCCCcEEEEecCCc-------------------cHHHHHHHHHhCCCCccCCHHHH
Confidence 6543111 22 3899977643311 22334677899999999999998
Q ss_pred HHHHHHHH
Q psy8894 293 GNELLKEM 300 (306)
Q Consensus 293 ~~~~~~~~ 300 (306)
..++..++
T Consensus 437 ~~al~~~~ 444 (447)
T TIGR02717 437 VKALSALY 444 (447)
T ss_pred HHHHHHHH
Confidence 87776443
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=76.06 Aligned_cols=126 Identities=23% Similarity=0.272 Sum_probs=83.7
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
|+++. .+..-+.++|+|||. |++|+...++|++.|++++....+..... +..|+... +++++.+. .|+++++
T Consensus 6 ~~~d~-~~~~L~gktIgIIG~-GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~--ADVVvLa 80 (330)
T PRK05479 6 YDKDA-DLSLIKGKKVAIIGY-GSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKW--ADVIMIL 80 (330)
T ss_pred ccCCC-ChhhhCCCEEEEEee-HHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhc--CCEEEEc
Confidence 34444 445556689999999 99999999999999999764433321011 23466655 78888876 8999999
Q ss_pred cCchhHHHHH-HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 95 VPPPGAAKAI-HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 95 vp~~~~~~~~-~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
+|+....+++ ++...+ .-..+++|+.||+-..... ..-+...+-.+-||+.|-.
T Consensus 81 VPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~ 136 (330)
T PRK05479 81 LPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHL 136 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchh
Confidence 9999888888 545443 2345668999997554221 1112233444458887763
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=71.62 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCC-ce-ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGG-KT-HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g-~~-i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+||+|+|+ |.+|+.+.+.+.+. ++++++..++.... +. ....+++.+++++... .+|++|=|.+++.+.+..
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAW-RPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhc-CCCEEEECCCHHHHHHHH
Confidence 368999999 99999999887653 47776553333200 11 2237889999997432 499999999999999999
Q ss_pred HHHHHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 105 HEALDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+.++++|+..++ +|.| |.+++..+.++++|++.|-++.=|.
T Consensus 80 ~~iL~~g~dlvv-~SvGALaD~~~~~~l~~~A~~~g~~i~ipS 121 (267)
T PRK13301 80 EGCLTAGLDMII-CSAGALADDALRARLIAAAEAGGARIRVPA 121 (267)
T ss_pred HHHHhcCCCEEE-EChhHhcCHHHHHHHHHHHHhCCCEEEEeC
Confidence 999999999876 5754 5666666666778999888777665
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.9e-05 Score=67.79 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=89.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+|.+||+ |..|+.+.+.+++. +++.++.-|....- . .-.+.++-.+|+|+.+. +|++|=+..++++.+.+.
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~--~DlvVEaAS~~Av~e~~~ 78 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAE--VDLVVEAASPEAVREYVP 78 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhc--cceeeeeCCHHHHHHHhH
Confidence 6899999 99999999888764 68877665544210 1 12344555789999865 999999999999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Cceec
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIA 152 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~ 152 (306)
++++.|++.+++-..-++++++.+.++++||..+-++-=|.- +|-++
T Consensus 79 ~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD 126 (255)
T COG1712 79 KILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLD 126 (255)
T ss_pred HHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHH
Confidence 999999998775444567888888888899999987776653 34333
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.6e-05 Score=65.42 Aligned_cols=117 Identities=17% Similarity=0.305 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+.++|+|+|+ |++|+....||++.|++++.+..+.... .+..|+.+++ ++|+.+. -|++++.+|.+...++.+
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~-~~eAv~~--aDvV~~L~PD~~q~~vy~ 78 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMS-VAEAVKK--ADVVMLLLPDEVQPEVYE 78 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCE-HHHHHHC---SEEEE-S-HHHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeecc-HHHHHhh--CCEEEEeCChHHHHHHHH
Confidence 4589999999 9999999999999999977566665311 1457988885 8888776 999999999999999986
Q ss_pred HHHH--cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 106 EALD--AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 106 e~~~--~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
+-++ ..-..+++|+.||+-.- ... +.-+.-++-++-|...|-.-
T Consensus 79 ~~I~p~l~~G~~L~fahGfni~~--~~i-~pp~~vdV~mvAPKgpG~~v 124 (165)
T PF07991_consen 79 EEIAPNLKPGATLVFAHGFNIHY--GLI-KPPKDVDVIMVAPKGPGHLV 124 (165)
T ss_dssp HHHHHHS-TT-EEEESSSHHHHC--TTS----TTSEEEEEEESSSCHHH
T ss_pred HHHHhhCCCCCEEEeCCcchhhc--Ccc-cCCCCCeEEEEecCCCChHH
Confidence 6665 34667788999995321 000 01123345666777766554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.6e-05 Score=71.80 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=76.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~~ 105 (306)
.++|+|||+ |++|....++|++.|++++...++.... +. -.|+.+. +..++.+. .|++++++|++ ....+.+
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~--ADiVvLaVpp~~~~~~v~~ 78 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQ--ADLIMNLLPDEVQHEVYEA 78 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhc--CCEEEEeCCcHhHHHHHHH
Confidence 478999999 9999999999999999866455553211 11 2366655 47776655 89999999999 5444455
Q ss_pred HHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 106 EALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 106 e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
++... .-+.++.|+.||+-...+.. +-+...+-.+-||+.|-
T Consensus 79 ei~~~l~~g~iVs~aaG~~i~~~~~~---~~~~~~VvrvmPn~p~~ 121 (314)
T TIGR00465 79 EIQPLLKEGKTLGFSHGFNIHFVQIV---PPKDVDVVMVAPKGPGT 121 (314)
T ss_pred HHHhhCCCCcEEEEeCCccHhhcccc---CCCCCcEEEECCCCCcH
Confidence 45442 22347779999986543321 21223465667999885
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.2e-05 Score=64.45 Aligned_cols=108 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~~e 106 (306)
++|++||. |+||+...++|.+.|+++. ..|+.... ++ -.|.....|++|+.+. .|++++++|. +.+.+++..
T Consensus 2 ~~Ig~IGl-G~mG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~s~~e~~~~--~dvvi~~v~~~~~v~~v~~~ 77 (163)
T PF03446_consen 2 MKIGFIGL-GNMGSAMARNLAKAGYEVT-VYDRSPEKAEALAEAGAEVADSPAEAAEQ--ADVVILCVPDDDAVEAVLFG 77 (163)
T ss_dssp BEEEEE---SHHHHHHHHHHHHTTTEEE-EEESSHHHHHHHHHTTEEEESSHHHHHHH--BSEEEE-SSSHHHHHHHHHC
T ss_pred CEEEEEch-HHHHHHHHHHHHhcCCeEE-eeccchhhhhhhHHhhhhhhhhhhhHhhc--ccceEeecccchhhhhhhhh
Confidence 68999999 9999999999999999964 45554210 11 2478899999999987 8999999998 555677776
Q ss_pred --HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 107 --ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 107 --~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.. ..-..+++-.+-.+.+...++.+ .+++.|++++
T Consensus 78 ~~i~~~l~~g~iiid~sT~~p~~~~~~~~-~~~~~g~~~v 116 (163)
T PF03446_consen 78 ENILAGLRPGKIIIDMSTISPETSRELAE-RLAAKGVRYV 116 (163)
T ss_dssp TTHGGGS-TTEEEEE-SS--HHHHHHHHH-HHHHTTEEEE
T ss_pred hHHhhccccceEEEecCCcchhhhhhhhh-hhhhccceee
Confidence 554 33455555344444444444443 4567777655
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.8e-05 Score=70.57 Aligned_cols=122 Identities=19% Similarity=0.297 Sum_probs=87.5
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+.+-+.++|||||. |..|.+...||++.|.+++.++-+.... .+..|+.+|. ++|+... .|++++.+|.+..
T Consensus 12 ~l~~LkgK~iaIIGY-GsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~-v~ea~k~--ADvim~L~PDe~q 87 (338)
T COG0059 12 DLDLLKGKKVAIIGY-GSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYT-VEEAAKR--ADVVMILLPDEQQ 87 (338)
T ss_pred ChhHhcCCeEEEEec-ChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeec-HHHHhhc--CCEEEEeCchhhH
Confidence 444666789999999 9999999999999999977676665311 1357999887 8888776 9999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 101 AKAIHEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 101 ~~~~~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
.++.++-++- .-..++.|+.||.-.-.. . +.-+.-++-++-|-|.|=..
T Consensus 88 ~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~--i-~ppkdvdV~MVAPKgPG~~V 138 (338)
T COG0059 88 KEVYEKEIAPNLKEGAALGFAHGFNIHFGL--I-VPPKDVDVIMVAPKGPGHLV 138 (338)
T ss_pred HHHHHHHhhhhhcCCceEEeccccceecce--e-cCCccCcEEEEcCCCCcHHH
Confidence 9988866653 233467799999643210 0 11233445666777766443
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.5e-05 Score=70.92 Aligned_cols=127 Identities=21% Similarity=0.327 Sum_probs=83.9
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
|+++. .+..-+.++|+|||. |++|+...++|+..|++++...++....+ +..|..++ +++|+... .|++++++
T Consensus 5 ~~~d~-~~~~LkgKtVGIIG~-GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~--ADVV~llL 79 (335)
T PRK13403 5 YEKDA-NVELLQGKTVAVIGY-GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRT--AQVVQMLL 79 (335)
T ss_pred ccccC-ChhhhCcCEEEEEeE-cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhc--CCEEEEeC
Confidence 34444 555666789999999 99999999999999999864444432101 13466654 79999886 99999999
Q ss_pred CchhHHHHHHH-HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 96 PPPGAAKAIHE-ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 96 p~~~~~~~~~e-~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
|.+....++.+ ... ..-..+++|+.||+-.-. .+ .--+.-++-++-|-+.|=..
T Consensus 80 Pd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~-~i--~pp~~vdv~mvaPKgpG~~v 135 (335)
T PRK13403 80 PDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG-QI--NPPSYVDVAMVAPKSPGHLV 135 (335)
T ss_pred CChHHHHHHHHHHHhcCCCCCEEEECCCcceecC-ce--eCCCCCeEEEECCCCCChHH
Confidence 98777777653 333 345678889999963210 00 01123344566666665443
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=65.40 Aligned_cols=114 Identities=14% Similarity=0.176 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCC-CC-Cc---eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPG-KG-GK---THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~-~~-g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+..+|+|+|+ |++|+...+.+.+.+ .+.+..+++. .. .+ +..++..+.+++++.++ .|++++++|+..+
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~DiViiavp~~~~ 79 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTS--VDTIVLAMPPSAH 79 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhc--CCEEEEecCHHHH
Confidence 4578999998 999999988887765 3323355542 10 11 12367778888888765 9999999999999
Q ss_pred HHHHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 101 AKAIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 101 ~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
.++++++... .=+.++..+.|++-+.+++. +-....+..++||..
T Consensus 80 ~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~---~~~~~~v~r~~Pn~a 125 (245)
T PRK07634 80 EELLAELSPLLSNQLVVTVAAGIGPSYLEER---LPKGTPVAWIMPNTA 125 (245)
T ss_pred HHHHHHHHhhccCCEEEEECCCCCHHHHHHH---cCCCCeEEEECCcHH
Confidence 9999887642 22566667889876654332 111123444677643
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=66.41 Aligned_cols=97 Identities=8% Similarity=0.086 Sum_probs=69.2
Q ss_pred CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC-ChhHHH
Q psy8894 54 GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI-PQLDMV 128 (306)
Q Consensus 54 g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf-~e~~~~ 128 (306)
++++++..|+..... +..|.++|.+++++..+ ++|++++++|+..+.+...+++++|++.+ |.++|. .+.+..
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~-~vDaVviatp~~~H~e~a~~aL~aGkhVl-~~s~gAlad~e~~ 78 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGAKIVSDFDEFLPE-DVDIVVEAASQEAVKEYAEKILKNGKDLL-IMSVGALADRELR 78 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCCceECCHHHHhcC-CCCEEEECCChHHHHHHHHHHHHCCCCEE-EECCcccCCHHHH
Confidence 456777777764111 23578899999999753 59999999999999999999999999865 478774 333333
Q ss_pred HHHHHHHHhcCCeEE-ccCCCceec
Q psy8894 129 KVKHRLIRQSKSRLI-GPNCPGIIA 152 (306)
Q Consensus 129 ~~~~~~ar~~gi~ii-GPNc~Gi~~ 152 (306)
+.+.+++++.|.++. +++.+|..+
T Consensus 79 ~~l~~aA~~~g~~l~i~sGai~g~d 103 (229)
T TIGR03855 79 ERLREVARSSGRKVYIPSGAIGGLD 103 (229)
T ss_pred HHHHHHHHhcCCEEEEChHHHHHHH
Confidence 344468899997555 554444443
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.4e-05 Score=71.04 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=67.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec---C-ee-----ccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL---D-LP-----VFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~---G-ip-----~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|+|+|++|..|+...+.+.+. ++++++..+++..++.+. + ++ .|.++++... .++|++++|+|...+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEIL-AGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHh-cCCCEEEECCCcHHH
Confidence 68999999999999999988887 888887777543333221 1 21 3444544321 259999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
.+.+.++.++|++. +-.++.|.-
T Consensus 82 ~~~v~~a~~aG~~V-ID~S~~fR~ 104 (343)
T PRK00436 82 MDLAPQLLEAGVKV-IDLSADFRL 104 (343)
T ss_pred HHHHHHHHhCCCEE-EECCcccCC
Confidence 99999999999874 446877754
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00016 Score=78.21 Aligned_cols=120 Identities=10% Similarity=0.085 Sum_probs=83.9
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCe------------EEEeeCCCCCC-ce----ecC---eec-cCCHHhhhh
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTK------------VVGGVSPGKGG-KT----HLD---LPV-FNTVKEARD 84 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~------------vv~~VnP~~~g-~~----i~G---ip~-y~sl~el~~ 84 (306)
..+.++|+|+|+ |++|+.+.+.+.+. +++ ++...++.... ++ ..+ +++ +.+.+++.+
T Consensus 566 ~~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 566 TKKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred cccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH
Confidence 345789999999 99999999988775 444 45566654311 11 113 455 667777764
Q ss_pred c-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCc
Q psy8894 85 A-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPE 154 (306)
Q Consensus 85 ~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~ 154 (306)
. .++|++|.++|+..+.++++.|+++|++.+ +..+..+++.++. +.|+++|+.++ |.|. ++|.
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv---~eky~~~e~~~L~-e~Ak~AGV~~m-~e~G--lDPG 708 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLV---TASYVSEEMSALD-SKAKEAGITIL-CEMG--LDPG 708 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEE---ECcCCHHHHHHHH-HHHHHcCCEEE-ECCc--cCHH
Confidence 1 249999999999999999999999999853 3345555555554 57899998766 5553 5554
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00011 Score=70.42 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=67.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC---------C-c------------eecCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG---------G-K------------THLDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~---------g-~------------~i~Gip~y~sl~el~~~~~ 87 (306)
.||+|+|+ |++|+.+.+.+.+. ++++++..+++.. | + .-.+++++.+++++...
T Consensus 2 ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 2 IKVGVNGY-GTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred eEEEEECC-CHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 58999999 99999998887765 8999887764320 0 0 01257788888888765
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+|++++|+|+..+.+.++.++++|++. + ++.+
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~V-I-~~~~ 110 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKA-I-FQGG 110 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEE-E-EcCC
Confidence 999999999999999999999999653 3 4555
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00019 Score=70.95 Aligned_cols=111 Identities=14% Similarity=0.048 Sum_probs=75.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--------c--CCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--------Y--GTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--------~--g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
+.+|+|+|+ |..|+..++.+.+ . ++++++..+++... ....+..+|.+++++....++|+++.+++
T Consensus 3 ~i~VgiiG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 3 PLKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMG 81 (426)
T ss_pred eEEEEEEee-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCC
Confidence 579999999 9999977655433 2 45677776654311 12334568889999987556999999986
Q ss_pred c-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 97 P-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 97 ~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+ +.+.+.+++|+++|++. ++-......+...++ .++|+++|+.+.
T Consensus 82 ~~~~~~~~~~~aL~~GkhV-VtaNK~~~a~~~~eL-~~lA~~~gv~l~ 127 (426)
T PRK06349 82 GIEPARELILKALEAGKHV-VTANKALLAVHGAEL-FAAAEEKGVDLY 127 (426)
T ss_pred CchHHHHHHHHHHHCCCeE-EEcCHHHHHHHHHHH-HHHHHHcCCcEE
Confidence 5 67789999999999874 321122211223344 468999998665
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00014 Score=68.23 Aligned_cols=88 Identities=15% Similarity=0.071 Sum_probs=66.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCC--CC---ceecCeec-cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGK--GG---KTHLDLPV-FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~--~g---~~i~Gip~-y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.+|+|||+ |++|+.+...+++ .++++++.+++.. .+ .+..|++. |.+++++.+..++|++++++|+..+.+.
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~ 80 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence 58999998 9999988666654 4788777765433 11 12357775 5588988765469999999999999999
Q ss_pred HHHHHHcCCCEEEEecC
Q psy8894 104 IHEALDAEMPLIVCITE 120 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~ 120 (306)
+..+.++|++. ++.++
T Consensus 81 a~~al~aGk~V-IdekP 96 (285)
T TIGR03215 81 ARLLAELGKIV-IDLTP 96 (285)
T ss_pred HHHHHHcCCEE-EECCc
Confidence 99999999884 54454
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=60.07 Aligned_cols=93 Identities=23% Similarity=0.193 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
..+|.|||+ ||.|+...+.|.+.|+.+.+..+++.... .+.+.++. ++.|+..+ .|+++++||.+...+++
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~-~~~~~~~~--aDlv~iavpDdaI~~va 85 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAIL-DLEEILRD--ADLVFIAVPDDAIAEVA 85 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT------TTGGGCC---SEEEE-S-CCHHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccc-cccccccc--CCEEEEEechHHHHHHH
Confidence 468999999 99999999999999999876656543111 23344444 57777765 99999999999999999
Q ss_pred HHHHHc---CCCEEEEecCCCChhH
Q psy8894 105 HEALDA---EMPLIVCITEGIPQLD 126 (306)
Q Consensus 105 ~e~~~~---Gi~~vvi~t~Gf~e~~ 126 (306)
+++... .-..+++-|+|-...+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~~~ 110 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALGSD 110 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--GG
T ss_pred HHHHHhccCCCCcEEEECCCCChHH
Confidence 999886 3455778899875444
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=67.56 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=73.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc----------CCeEEEeeCCCC-----CCce---------ecC-eecc------CC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY----------GTKVVGGVSPGK-----GGKT---------HLD-LPVF------NT 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~----------g~~vv~~VnP~~-----~g~~---------i~G-ip~y------~s 78 (306)
..+|+|+|+ |++|+...+.+.+. ++++++.+|++. .|-. -.| +..| .+
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 358999999 99999887766543 567888877531 0100 011 2333 37
Q ss_pred HHhhhhcCCCcEEEEecCchh-----HHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 79 VKEARDATGAEATVIYVPPPG-----AAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~-----~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
++++..+.++|++|+++|+.. +.+.+++|+++|++. ++-+.+.-.....++ .++|+++|..+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhV-VtaNK~pla~~~~eL-~~~A~~~g~~~~ 148 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHV-VTSNKGPLALAYKEL-KELAKKNGVRFR 148 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEE-EcCCcHHHHhhHHHH-HHHHHHcCCEEE
Confidence 888876556999999999744 478999999999884 432223322223344 457899998666
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00014 Score=59.14 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=63.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC-CCceec----------CeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK-GGKTHL----------DLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~-~g~~i~----------Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
||+|+|++|..|+...+.|.++ .++++..+..+. .|+.+. .+.+-. +.+++ . ++|+++.|+|..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-S--DVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-T--TESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-h--cCCEEEecCchh
Confidence 6999999999999999999887 778777766554 444321 111111 23344 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+....+++.|++ ++=.++-|.
T Consensus 78 ~~~~~~~~~~~~g~~-ViD~s~~~R 101 (121)
T PF01118_consen 78 ASKELAPKLLKAGIK-VIDLSGDFR 101 (121)
T ss_dssp HHHHHHHHHHHTTSE-EEESSSTTT
T ss_pred HHHHHHHHHhhCCcE-EEeCCHHHh
Confidence 999999999999996 344677664
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00026 Score=66.82 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=69.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC--CC---ceecCeec-cCCHHhhhhc---CCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK--GG---KTHLDLPV-FNTVKEARDA---TGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~--~g---~~i~Gip~-y~sl~el~~~---~~iDlavi~vp~~ 98 (306)
++.+|+|||. |+.|+.+...+++. ++++++.++++. .+ ..-.|++. |.+++++.+. .++|++++++|+.
T Consensus 3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~ 81 (302)
T PRK08300 3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG 81 (302)
T ss_pred CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH
Confidence 4578999995 99999877666654 788887765543 12 12358886 5789999864 4699999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.+.+....+.++|+.. +..++=
T Consensus 82 ~H~e~a~~a~eaGk~V-ID~sPA 103 (302)
T PRK08300 82 AHVRHAAKLREAGIRA-IDLTPA 103 (302)
T ss_pred HHHHHHHHHHHcCCeE-EECCcc
Confidence 9999999999999885 445653
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0003 Score=54.31 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=54.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCCCCCc----eecCeeccC-CHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPGKGGK----THLDLPVFN-TVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~~~g~----~i~Gip~y~-sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+++|+ |+||+...+.+.+.| .++....+++.... +..+..++. +..|+.++ .|++++++||....++
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--advvilav~p~~~~~v 77 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQE--ADVVILAVKPQQLPEV 77 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHH--TSEEEE-S-GGGHHHH
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhcc--CCEEEEEECHHHHHHH
Confidence 6899999 999999999999998 66542335543101 234556666 78888776 9999999999999999
Q ss_pred HHHH
Q psy8894 104 IHEA 107 (306)
Q Consensus 104 ~~e~ 107 (306)
+++.
T Consensus 78 ~~~i 81 (96)
T PF03807_consen 78 LSEI 81 (96)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9998
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=63.29 Aligned_cols=113 Identities=10% Similarity=0.137 Sum_probs=85.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCCCc----eecC---eeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKGGK----THLD---LPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~g~----~i~G---ip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
..+.|+.++|+ |++++...+.+.- .++++++..+|+.... +-++ .++|.|.+++.+...+|++.+.+|.
T Consensus 4 s~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 4 SATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred CceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCC
Confidence 45689999999 8888776665433 4788999999964211 1123 4799999999987678999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
..+.+++..++++|.+ |+|=-+ ..+.++.+++. ++||++|+-++
T Consensus 83 ~qH~evv~l~l~~~K~-VL~EKPla~n~~e~~~iv-eaA~~rgv~~m 127 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH-VLCEKPLAMNVAEAEEIV-EAAEARGVFFM 127 (351)
T ss_pred ccHHHHHHHHHHcCCc-EEecccccCCHHHHHHHH-HHHHHcCcEEE
Confidence 9999999999999988 555222 44566666666 57999997554
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00051 Score=65.19 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee----------cC------eeccCCHHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH----------LD------LPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i----------~G------ip~y~sl~el~~~~~iDlav 92 (306)
.++|+|+|+ |.||......|.+.|+++. .+++.... +.+ .| +....+++++.+. .|+++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADFAV 79 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCEEE
Confidence 458999999 9999999999999999864 55554210 001 13 3345567776554 89999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
+++|+..+.++++.+. .+. .++.++.|+...
T Consensus 80 ~~v~~~~~~~v~~~l~-~~~-~vi~~~~Gi~~~ 110 (328)
T PRK14618 80 VAVPSKALRETLAGLP-RAL-GYVSCAKGLAPD 110 (328)
T ss_pred EECchHHHHHHHHhcC-cCC-EEEEEeeccccC
Confidence 9999998877776543 333 456678887533
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00055 Score=58.28 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCC-------------CCCC--ceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSP-------------GKGG--KTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP-------------~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+|+|+|+ |+.|.+....+.+.|.++. +.-++ .+.. .--..+.+..+++++.+. .|++++++
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED--ADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--ccEEEecc
Confidence 6999999 9999999888888887743 22221 1100 011245677789888775 89999999
Q ss_pred CchhHHHHHHHHHHc--CCCEEEEecCCCChhH---HHHHHHHHHHhcCC-eEEccCC
Q psy8894 96 PPPGAAKAIHEALDA--EMPLIVCITEGIPQLD---MVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 96 p~~~~~~~~~e~~~~--Gi~~vvi~t~Gf~e~~---~~~~~~~~ar~~gi-~iiGPNc 147 (306)
|.....++++++... .-+.+++.+-||.... ..++.++......+ -+.||+-
T Consensus 78 Ps~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~ 135 (157)
T PF01210_consen 78 PSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSF 135 (157)
T ss_dssp -GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--
T ss_pred cHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccH
Confidence 999999999998873 2344556777992221 23333333333323 4456663
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=97.41 E-value=9e-05 Score=59.74 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=69.2
Q ss_pred cCCCCCChHHHHHHHHc----CCeEEEeeCCC--CCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 37 GFTGKQGTFHSKQAIEY----GTKVVGGVSPG--KGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 37 Gasg~~G~~~~~~l~~~----g~~vv~~VnP~--~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
|+ |++|+..++.+.+. ++++++..+.+ .... ...+...+.+++++.+..++|++|.+++++.+.+.++++
T Consensus 1 G~-G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~ 79 (117)
T PF03447_consen 1 GF-GNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKA 79 (117)
T ss_dssp ---SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHH
Confidence 55 78888888877664 67888777776 1001 123456778899998733599999999999999999999
Q ss_pred HHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEE
Q psy8894 108 LDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 108 ~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~ii 143 (306)
+++|++.|. .+-| ++....-+.+.++|+++|.++.
T Consensus 80 L~~G~~VVt-~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 80 LERGKHVVT-ANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHTTCEEEE-S-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHCCCeEEE-ECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 999999644 3322 2211223334468999998764
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00092 Score=62.83 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e 106 (306)
+|+++|. |+||+...++|.+.|++++ ..|++.... .-.|..++.+++|+.+.. .+|++++++|+. .+.++++.
T Consensus 2 ~Ig~IGl-G~MG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~ 79 (301)
T PRK09599 2 QLGMIGL-GRMGGNMARRLLRGGHEVV-GYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE 79 (301)
T ss_pred EEEEEcc-cHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHH
Confidence 7999999 9999999999999999965 566653101 124778888898887631 379999999987 66777766
Q ss_pred HHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCce
Q psy8894 107 ALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGI 150 (306)
Q Consensus 107 ~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi 150 (306)
+... .- +.++..+++.++ ...++. +.+++.|++++ .|.+-|.
T Consensus 80 l~~~l~~g~ivid~st~~~~-~~~~~~-~~~~~~g~~~~dapvsG~~ 124 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYK-DDIRRA-ELLAEKGIHFVDVGTSGGV 124 (301)
T ss_pred HHhhCCCCCEEEeCCCCChh-HHHHHH-HHHHHcCCEEEeCCCCcCH
Confidence 6543 12 334445555443 333333 35678888766 4555443
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=60.92 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=68.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
.+|+++|+ |+||....+.+.+.+. +-+...+|+. +. .+.....+..++.++ .|++++++||....++++++
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~--~D~Vilavkp~~~~~vl~~i 77 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK--KN-TPFVYLQSNEELAKT--CDIIVLAVKPDLAGKVLLEI 77 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh--hc-CCeEEeCChHHHHHh--CCEEEEEeCHHHHHHHHHHH
Confidence 57999999 9999999998888752 2345778764 22 244445566666654 89999999999999999998
Q ss_pred HHc-CCCEEEEecCCCChhHHHH
Q psy8894 108 LDA-EMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e~~~~~ 129 (306)
... .-+.+|....|++.+..++
T Consensus 78 ~~~l~~~~iIS~~aGi~~~~l~~ 100 (260)
T PTZ00431 78 KPYLGSKLLISICGGLNLKTLEE 100 (260)
T ss_pred HhhccCCEEEEEeCCccHHHHHH
Confidence 752 3356777889998655443
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00095 Score=62.71 Aligned_cols=110 Identities=13% Similarity=0.174 Sum_probs=72.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhc-CCCcEEEEecCchhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDA-TGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+|+|||. |+||+...++|.+.|++++ ..|++... +. -.|...+.+++++.+. ..+|++++++|+..+.++++++
T Consensus 2 ~Ig~IGl-G~mG~~la~~L~~~g~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l 79 (298)
T TIGR00872 2 QLGLIGL-GRMGANIVRRLAKRGHDCV-GYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEEL 79 (298)
T ss_pred EEEEEcc-hHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHH
Confidence 6999999 9999999999999999965 45655310 11 1355666777776542 2489999999999888888877
Q ss_pred HHcC-C-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 108 LDAE-M-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 108 ~~~G-i-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
...- - +.++..+++.++ +..++.. .+++.|++.+.-
T Consensus 80 ~~~l~~g~ivid~st~~~~-~t~~~~~-~~~~~g~~~vda 117 (298)
T TIGR00872 80 APTLEKGDIVIDGGNSYYK-DSLRRYK-LLKEKGIHLLDC 117 (298)
T ss_pred HhhCCCCCEEEECCCCCcc-cHHHHHH-HHHhcCCeEEec
Confidence 6531 2 334434444433 3333332 356778876653
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00076 Score=61.92 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|+|+|+ |++|+...+.+.+.| +++ ..++++.... +..|+.+..+..++..+ .|++++++|+....++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~g~~~~~v-~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~--advVil~v~~~~~~~v 78 (267)
T PRK11880 3 KKIGFIGG-GNMASAIIGGLLASGVPAKDI-IVSDPSPEKRAALAEEYGVRAATDNQEAAQE--ADVVVLAVKPQVMEEV 78 (267)
T ss_pred CEEEEEec-hHHHHHHHHHHHhCCCCcceE-EEEcCCHHHHHHHHHhcCCeecCChHHHHhc--CCEEEEEcCHHHHHHH
Confidence 47999999 999999999888877 443 4677653111 11366777788777655 9999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCChhH
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
++++....-+.++-++.|.+.+.
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~~~~ 101 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVTLAR 101 (267)
T ss_pred HHHHHhhcCCEEEEecCCCCHHH
Confidence 99987642245666788886544
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0013 Score=61.75 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e 106 (306)
+|++||. |+||....+++.+.|++++ ..|++... + .-.|..++.+++++.++. ..|++++++|+. .+.+++++
T Consensus 2 ~Ig~IGl-G~mG~~mA~~L~~~g~~v~-v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~ 79 (299)
T PRK12490 2 KLGLIGL-GKMGGNMAERLREDGHEVV-GYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKD 79 (299)
T ss_pred EEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHH
Confidence 6999999 9999999999999999965 56665310 1 124778888999887541 269999999998 77777777
Q ss_pred HHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 107 ALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 107 ~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+... .-..+++-++..+.....++.+ .+++.|++++
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~-~~~~~g~~~v 116 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAE-ELAERGIHYV 116 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHH-HHHHcCCeEE
Confidence 6543 2233444343333334444443 3566777665
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00089 Score=62.91 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCeeccCCHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH----------------LDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i----------------~Gip~y~sl~el~~~~~iDlavi 93 (306)
++|+|+|+ |.+|......|.+.|+++. .+++...- +.+ .+.....+++++.+. .|++++
T Consensus 2 mkI~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGA-GSWGTALAIVLARNGHDVT-LWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--ADLILV 77 (325)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--CCEEEE
Confidence 47999999 9999999999999999853 55543200 000 134455677777655 899999
Q ss_pred ecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 94 YVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
++|+..+.++++++... .- +.++.++.|+..+
T Consensus 78 ~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~ 111 (325)
T PRK00094 78 AVPSQALREVLKQLKPLLPPDAPIVWATKGIEPG 111 (325)
T ss_pred eCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCC
Confidence 99999888888877653 22 3345466688654
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=60.03 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=68.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~-- 104 (306)
++|+|+|. |.+|....+.+.+.|++++ ..|++... + .-.|.....+++++.++ .|++++++|...... ++
T Consensus 3 ~~IgviG~-G~mG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~g~~~~~~~~e~~~~--~d~vi~~vp~~~~~~~v~~~ 78 (296)
T PRK11559 3 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VYDRNPEAVAEVIAAGAETASTAKAVAEQ--CDVIITMLPNSPHVKEVALG 78 (296)
T ss_pred ceEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHhc--CCEEEEeCCCHHHHHHHHcC
Confidence 47999998 9999999999999999865 56665310 1 12366677788888776 999999999765433 33
Q ss_pred -HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 -HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 -~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+.+... .-..+++-++..+....+++. +.+++.|++++-
T Consensus 79 ~~~~~~~~~~g~iiid~st~~~~~~~~l~-~~~~~~g~~~~d 119 (296)
T PRK11559 79 ENGIIEGAKPGTVVIDMSSIAPLASREIA-AALKAKGIEMLD 119 (296)
T ss_pred cchHhhcCCCCcEEEECCCCCHHHHHHHH-HHHHHcCCcEEE
Confidence 223332 223344423334444334443 345566776553
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=60.49 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCCC--c----eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKGG--K----THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~g--~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|+|+|+ |++|+...+.+.+.| .+++ .++++... . ...+..+..+..++.++ .|++++++|+..+
T Consensus 2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~-~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~--aDvVilavpp~~~ 77 (277)
T PRK06928 2 EKIGFIGY-GSMADMIATKLLETEVATPEEII-LYSSSKNEHFNQLYDKYPTVELADNEAEIFTK--CDHSFICVPPLAV 77 (277)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcccEE-EEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhh--CCEEEEecCHHHH
Confidence 36999998 999999999888877 4554 55554200 0 11134556677777665 8999999999999
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCChhHHHH
Q psy8894 101 AKAIHEALDA--EMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 101 ~~~~~e~~~~--Gi~~vvi~t~Gf~e~~~~~ 129 (306)
.++++++... .=+.++.++.|++.+++++
T Consensus 78 ~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~ 108 (277)
T PRK06928 78 LPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE 108 (277)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 9999988642 1235666889998766554
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0026 Score=60.50 Aligned_cols=113 Identities=21% Similarity=0.219 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe-EEEee-------------CCCCCCc-e-ecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGV-------------SPGKGGK-T-HLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~V-------------nP~~~g~-~-i~Gip~y~sl~el~~~~~iDlavi 93 (306)
+++|+|+|+ |.-|++..+.+.+.|.+ .+|.- |+++-.. . -.++....+++++.+. .|++++
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--ad~iv~ 77 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG--ADIIVI 77 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc--CCEEEE
Confidence 368999999 99999999999998887 55664 3333111 1 1245677789999875 999999
Q ss_pred ecCchhHHHHHHHHH---HcCCCEEEEecCCCChhHHHHHHHHHH-HhcC---C-eEEccCC
Q psy8894 94 YVPPPGAAKAIHEAL---DAEMPLIVCITEGIPQLDMVKVKHRLI-RQSK---S-RLIGPNC 147 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~---~~Gi~~vvi~t~Gf~e~~~~~~~~~~a-r~~g---i-~iiGPNc 147 (306)
.+|.....+++++.. ..+.+.++ .|-||.......+ .++. +..+ + -+.|||-
T Consensus 78 avPs~~~r~v~~~l~~~l~~~~~iv~-~sKGie~~t~~l~-seii~e~l~~~~~~vLSGPs~ 137 (329)
T COG0240 78 AVPSQALREVLRQLKPLLLKDAIIVS-ATKGLEPETGRLL-SEIIEEELPDNPIAVLSGPSF 137 (329)
T ss_pred ECChHHHHHHHHHHhhhccCCCeEEE-EeccccCCCcchH-HHHHHHHcCCCeEEEEECccH
Confidence 999999999999874 55666555 6889965432222 2222 2223 3 5668874
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0017 Score=60.07 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=66.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCc-----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGK-----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~-----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+|+|+ |+||+...+.|.+.|+ ..+...+++.... ...|+.++.+..++..+ .|++++++|+..+.++
T Consensus 2 ~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--aDiVilav~p~~~~~v 78 (273)
T PRK07680 2 NIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQ--SDLIFICVKPLDIYPL 78 (273)
T ss_pred EEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHh--CCEEEEecCHHHHHHH
Confidence 6999998 9999999999988874 2344667653110 11267777888887665 8999999999999999
Q ss_pred HHHHHHc--CCCEEEEecCCCChhH
Q psy8894 104 IHEALDA--EMPLIVCITEGIPQLD 126 (306)
Q Consensus 104 ~~e~~~~--Gi~~vvi~t~Gf~e~~ 126 (306)
++++... .-+.++-++.|.+-+.
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~~~~ 103 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPISVEQ 103 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCCHHH
Confidence 9887642 1245666777875433
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=61.73 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=58.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.++|+|+|+ |.+|....+.+.+.|++++ +++++.... ...|+..+.+++++... ++|++++++|+....+++++
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~~V~-~~d~~~~~~~a~~~gv~~~~~~~e~~~~-~aDvVilavp~~~~~~vl~~ 111 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGHTVL-ATSRSDYSDIAAELGVSFFRDPDDFCEE-HPDVVLLCTSILSTEAVLRS 111 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECccHHHHHHHcCCeeeCCHHHHhhC-CCCEEEEecCHHHHHHHHHh
Confidence 3568999998 9999999999988898866 666653111 12466677888887531 38999999999999999988
Q ss_pred H
Q psy8894 107 A 107 (306)
Q Consensus 107 ~ 107 (306)
+
T Consensus 112 l 112 (304)
T PLN02256 112 L 112 (304)
T ss_pred h
Confidence 7
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.003 Score=60.58 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=75.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH--------cC--CeEEEeeCCCC-----CCcee---------cC-eecc-------C
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE--------YG--TKVVGGVSPGK-----GGKTH---------LD-LPVF-------N 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~--------~g--~~vv~~VnP~~-----~g~~i---------~G-ip~y-------~ 77 (306)
..+|+|+|+ |+.|+..++.+.+ +| +++++..|.+. .|-.+ .| +.-| .
T Consensus 2 ~i~VaIiG~-GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFGF-GNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 368999999 9999987665544 46 55776655321 01000 00 1111 1
Q ss_pred -CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 78 -TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 78 -sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
+++++....++|++|.+++++.+.+..+++++.|++.|. .+.|.--...+++ .++|++++.++.=.-+.+.=-|
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt-anK~~la~~~~el-~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT-SNKPPIAFHYDEL-LDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE-CCHHHHHhCHHHH-HHHHHHcCCeEEEeccccccCC
Confidence 566776434699999999999999999999999999654 4544211111223 3578889987775544443333
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=58.64 Aligned_cols=94 Identities=16% Similarity=0.241 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC----eEEEee-CCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT----KVVGGV-SPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~----~vv~~V-nP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++|++||. |+||....+.|.+.|+ +++ .. |++....+ ..|+.+..+..++.++ .|++++++|++.+.+
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~-v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~--aDvVil~v~~~~~~~ 76 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRIS-TADDSNPARRDVFQSLGVKTAASNTEVVKS--SDVIILAVKPQVVKD 76 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEE-EEeCCCHHHHHHHHHcCCEEeCChHHHHhc--CCEEEEEECcHHHHH
Confidence 36999998 9999999999999887 554 45 66531111 2477778888887765 899999999999999
Q ss_pred HHHHHHHc-CC-CEEEEecCCCChhHHH
Q psy8894 103 AIHEALDA-EM-PLIVCITEGIPQLDMV 128 (306)
Q Consensus 103 ~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~ 128 (306)
+++++... .- +.++..+.|.+.++.+
T Consensus 77 vl~~l~~~~~~~~~iIs~~~g~~~~~l~ 104 (266)
T PLN02688 77 VLTELRPLLSKDKLLVSVAAGITLADLQ 104 (266)
T ss_pred HHHHHHhhcCCCCEEEEecCCCcHHHHH
Confidence 99877543 22 3344456787654433
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0029 Score=58.73 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=67.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCCC--ce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKGG--KT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~g--~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
++|++||+ |+||....+.+.+.| .+++ ..|+.... +. ..|+....+..++.++ .|++++++|+....
T Consensus 4 mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~-v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~--aDvVilav~p~~~~ 79 (279)
T PRK07679 4 QNISFLGA-GSIAEAIIGGLLHANVVKGEQIT-VSNRSNETRLQELHQKYGVKGTHNKKELLTD--ANILFLAMKPKDVA 79 (279)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEE-EECCCCHHHHHHHHHhcCceEeCCHHHHHhc--CCEEEEEeCHHHHH
Confidence 58999998 999999999998877 4443 56654210 11 1367777788887765 89999999999999
Q ss_pred HHHHHHHHc-CC-CEEEEecCCCChhHHHH
Q psy8894 102 KAIHEALDA-EM-PLIVCITEGIPQLDMVK 129 (306)
Q Consensus 102 ~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~ 129 (306)
++++++... .- +.++-+..|++.+.+++
T Consensus 80 ~vl~~l~~~~~~~~liIs~~aGi~~~~l~~ 109 (279)
T PRK07679 80 EALIPFKEYIHNNQLIISLLAGVSTHSIRN 109 (279)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence 999887653 12 34444568987665443
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.003 Score=58.84 Aligned_cols=109 Identities=12% Similarity=0.145 Sum_probs=68.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHH-HHH---
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAA-KAI--- 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~-~~~--- 104 (306)
+|+|+|. |+||....+.+.+.|++++ ..|++..-. .-.|.....++.++.++ .|++++++|..... .++
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--aDivi~~vp~~~~~~~v~~~~ 76 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGYQLH-VTTIGPEVADELLAAGAVTAETARQVTEQ--ADVIFTMVPDSPQVEEVAFGE 76 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCcccCCHHHHHhc--CCEEEEecCCHHHHHHHHcCc
Confidence 4899999 9999999999999999975 667653100 12355566788887776 99999999986443 333
Q ss_pred HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.+... .-..+++-++..+....+++. +.+++.|+.++.+
T Consensus 77 ~~~~~~~~~g~iivd~st~~~~~~~~l~-~~l~~~g~~~~~~ 117 (291)
T TIGR01505 77 NGIIEGAKPGKTLVDMSSISPIESKRFA-KAVKEKGIDYLDA 117 (291)
T ss_pred chHhhcCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCCEEec
Confidence 223332 222344323344444444444 3456778877764
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0018 Score=62.26 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC-CCceec-------Ce--eccC--CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK-GGKTHL-------DL--PVFN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~-~g~~i~-------Gi--p~y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.+|+|+|+||..|+...+.|.++ ++++++.+.++. .|+.+. +. ..+. +.+++.+ ++|++++|+|.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 47999999999999999999887 788776645432 233221 11 0132 3344443 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
..+.+.+.++.++|++. +-.++.|.-+
T Consensus 79 ~~s~~~~~~~~~~G~~V-IDlS~~fR~~ 105 (346)
T TIGR01850 79 GVSAELAPELLAAGVKV-IDLSADFRLK 105 (346)
T ss_pred hHHHHHHHHHHhCCCEE-EeCChhhhcC
Confidence 99999999999999764 4468777533
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=58.55 Aligned_cols=112 Identities=15% Similarity=0.164 Sum_probs=76.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|++||+ |+||....+.|.+.|+ .-+...|++.... +..|+..+.+..++..+ .|++++++||..+.++
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~--aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANS--ADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhh--CCEEEEEeChHHHHHH
Confidence 47999999 9999999999998775 2345778754111 12467777778888765 8999999999999999
Q ss_pred HHHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 104 IHEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 104 ~~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
++++... +=+.++-+..|++-+++++.+. ....+-=+-||..
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~---~~~~vvR~MPN~~ 123 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFD---RKLKVIRVMPNTP 123 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcC---CCCcEEEECCChH
Confidence 9887642 2234455778998766554321 1123433347764
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0023 Score=61.30 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC------C---cee-------cCeeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG------G---KTH-------LDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~------g---~~i-------~Gip~y~sl~el~~~~~iDlav 92 (306)
++++|+|+|+ |.+|......|.+.|..+++..+|... + +.. ..+.+..++++..+. .|+++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~--aDlVi 82 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC--ADVVV 82 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--CCEEE
Confidence 4578999999 999999888888887444444443210 0 001 122344566665554 89999
Q ss_pred EecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 93 IYVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+++|+....++++++... .- ..++.++-|+...
T Consensus 83 lavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~ 117 (341)
T PRK12439 83 MGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQG 117 (341)
T ss_pred EEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCC
Confidence 999999999999988763 22 2466788899653
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0058 Score=57.61 Aligned_cols=83 Identities=18% Similarity=0.144 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..++|+|+|+ |++|+...+.|.+.|+++. ..|++. . .+++++.+. .|++++++|...+.++++.+.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~-~~~r~~--~--------~~~~~~~~~--advvi~~vp~~~~~~v~~~l~ 68 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVR-VWSRRS--G--------LSLAAVLAD--ADVIVSAVSMKGVRPVAEQVQ 68 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEE-EEeCCC--C--------CCHHHHHhc--CCEEEEECChHHHHHHHHHHH
Confidence 3468999999 9999999999999999875 666653 1 467777765 899999999998888888775
Q ss_pred HcC--C-CEEEEecCCCChh
Q psy8894 109 DAE--M-PLIVCITEGIPQL 125 (306)
Q Consensus 109 ~~G--i-~~vvi~t~Gf~e~ 125 (306)
... - ..++..|.|+..+
T Consensus 69 ~~~~~~~~ivi~~s~gi~~~ 88 (308)
T PRK14619 69 ALNLPPETIIVTATKGLDPE 88 (308)
T ss_pred HhcCCCCcEEEEeCCcccCC
Confidence 422 1 2344456677644
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0033 Score=57.59 Aligned_cols=95 Identities=7% Similarity=0.020 Sum_probs=65.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCCCCC-ce----ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPGKGG-KT----HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~~~g-~~----i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+|++||+ |++|+...+.+.+.|+. .+...|++... ++ ..+...+.+..++..+ .|++++++|++...+++
T Consensus 2 ~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~--aDvVilav~p~~~~~vl 78 (258)
T PRK06476 2 KIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDR--SDVVFLAVRPQIAEEVL 78 (258)
T ss_pred eEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHh--CCEEEEEeCHHHHHHHH
Confidence 6999998 99999999999887764 23455554311 11 2256778888888765 89999999999999988
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHH
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
+++.-..=+.++-+..|.+-+.+++
T Consensus 79 ~~l~~~~~~~vis~~ag~~~~~l~~ 103 (258)
T PRK06476 79 RALRFRPGQTVISVIAATDRAALLE 103 (258)
T ss_pred HHhccCCCCEEEEECCCCCHHHHHH
Confidence 8762122234555666776555443
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0051 Score=59.66 Aligned_cols=96 Identities=18% Similarity=0.117 Sum_probs=65.8
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcC-------Ce-EEEeeCCCCCC-------------ce-e------cCeeccCC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYG-------TK-VVGGVSPGKGG-------------KT-H------LDLPVFNT 78 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g-------~~-vv~~VnP~~~g-------------~~-i------~Gip~y~s 78 (306)
-.++++|+|+|+ |..|++....+.+.| .+ .+|.-|+...+ .. . ..+....+
T Consensus 8 ~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsd 86 (365)
T PTZ00345 8 RCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSD 86 (365)
T ss_pred ccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecC
Confidence 345679999999 999999988887765 45 45555543100 00 1 13334556
Q ss_pred HHhhhhcCCCcEEEEecCchhHHHHHHHHHH--cC--CCEEEEecCCCChh
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAKAIHEALD--AE--MPLIVCITEGIPQL 125 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~~~~e~~~--~G--i~~vvi~t~Gf~e~ 125 (306)
+.++.+. .|++++++|+....++++++.. .- -..++.++-|+..+
T Consensus 87 l~eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 87 LKEAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHHHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccC
Confidence 7776664 8999999999999999999875 21 12466688999643
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=65.76 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=61.1
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..+++++|+|||. |++|+...+.+.+.|++++ +++++.... ...|+..+.+++++... +.|++++++|+....++
T Consensus 48 ~~~~~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~A~~~Gv~~~~d~~e~~~~-~aDvViLavP~~~~~~v 124 (667)
T PLN02712 48 DNTTQLKIAIIGF-GNYGQFLAKTLISQGHTVL-AHSRSDHSLAARSLGVSFFLDPHDLCER-HPDVILLCTSIISTENV 124 (667)
T ss_pred ccCCCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcCCEEeCCHHHHhhc-CCCEEEEcCCHHHHHHH
Confidence 3455788999998 9999999999999999875 566542111 12467777888886532 38999999999999999
Q ss_pred HHHHH
Q psy8894 104 IHEAL 108 (306)
Q Consensus 104 ~~e~~ 108 (306)
+++..
T Consensus 125 l~~l~ 129 (667)
T PLN02712 125 LKSLP 129 (667)
T ss_pred HHhhh
Confidence 98875
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0044 Score=64.65 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+.++|+|||+ |++|+...+.+.+.|++++ ++|+....+ ...|+..+.+++++... ..|++++++|+....+++++
T Consensus 368 ~~~kIgIIGl-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~a~~~Gv~~~~~~~el~~~-~aDvVILavP~~~~~~vi~~ 444 (667)
T PLN02712 368 SKLKIAIVGF-GNFGQFLAKTMVKQGHTVL-AYSRSDYSDEAQKLGVSYFSDADDLCEE-HPEVILLCTSILSTEKVLKS 444 (667)
T ss_pred CCCEEEEEec-CHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHcCCeEeCCHHHHHhc-CCCEEEECCChHHHHHHHHH
Confidence 5689999998 9999999999999998866 666653111 12466677888887642 38999999999999999998
Q ss_pred HHH
Q psy8894 107 ALD 109 (306)
Q Consensus 107 ~~~ 109 (306)
...
T Consensus 445 l~~ 447 (667)
T PLN02712 445 LPF 447 (667)
T ss_pred HHH
Confidence 764
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0058 Score=59.63 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec---------CeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL---------DLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~---------Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.++++|+|+||+|..|+...+.|.++ ++++......+..|+.+. ..+.+.+++...- .++|++++++|.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~-~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADF-SDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHh-cCCCEEEEcCCH
Confidence 46679999999999999999999888 788766554433343321 1111222222111 249999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
..+.+.+..+ +.|++.|- .++-|.
T Consensus 115 ~~s~~i~~~~-~~g~~VID-lSs~fR 138 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVD-LSADFR 138 (381)
T ss_pred HHHHHHHHHH-hCCCEEEE-cCchhc
Confidence 9999999986 77866444 576664
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.005 Score=57.81 Aligned_cols=107 Identities=14% Similarity=0.192 Sum_probs=68.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCce--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHHH-
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKT--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIHE- 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~e- 106 (306)
+|++||. |+||....++|.+.|+++. +-.+|+. +. -.|...+.+..++.++ .|++++++|... +.+++..
T Consensus 2 ~Ig~IGl-G~MG~~ma~~L~~~G~~v~v~~~~~~~--~~~~~~g~~~~~s~~~~~~~--advVi~~v~~~~~v~~v~~~~ 76 (292)
T PRK15059 2 KLGFIGL-GIMGTPMAINLARAGHQLHVTTIGPVA--DELLSLGAVSVETARQVTEA--SDIIFIMVPDTPQVEEVLFGE 76 (292)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCCeEEEEeCCHhH--HHHHHcCCeecCCHHHHHhc--CCEEEEeCCChHHHHHHHcCC
Confidence 6999999 9999999999999999853 3344432 22 2466777888888765 999999999873 3444321
Q ss_pred --HHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 107 --ALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 107 --~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+... .-..+|+-.+..+.....++.+ .+++.|.+++.
T Consensus 77 ~g~~~~~~~g~ivvd~sT~~p~~~~~~~~-~~~~~G~~~vd 116 (292)
T PRK15059 77 NGCTKASLKGKTIVDMSSISPIETKRFAR-QVNELGGDYLD 116 (292)
T ss_pred cchhccCCCCCEEEECCCCCHHHHHHHHH-HHHHcCCCEEE
Confidence 2221 1123444444455555554443 45777876653
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.002 Score=55.07 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=59.9
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-------CHHhhhhcCCCcEEEEecC-----chhH
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-------TVKEARDATGAEATVIYVP-----PPGA 100 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-------sl~el~~~~~iDlavi~vp-----~~~~ 100 (306)
|+|+|++|..|+...+.|.+.|+++.+.+-....-++..++.+.. ++.+... +.|.++.+++ ...+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~~~~~~ 78 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPKDVDAA 78 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTTHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhh--hcchhhhhhhhhccccccc
Confidence 789999999999999999999999876653321001122333222 2444444 4999999887 4556
Q ss_pred HHHHHHHHHcCCCEEEEecC
Q psy8894 101 AKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 79 KNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp HHHHHHHHHTTSSEEEEEEE
T ss_pred ccccccccccccccceeeec
Confidence 77778888899998887664
|
... |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0043 Score=58.91 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
+.+|+|+||+|-.|....+.|.++ .+++++...-.. ..+ ...+++.. ++|++++++|...+.+.+.++.
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~--~~~------~~~~~~~~--~~DvvFlalp~~~s~~~~~~~~ 71 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKR--KDA------AARRELLN--AADVAILCLPDDAAREAVALID 71 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCC--Ccc------cCchhhhc--CCCEEEECCCHHHHHHHHHHHH
Confidence 468999999999999999988887 566665433221 222 22233333 3899999999999999999999
Q ss_pred HcCCCEEEEecCCCC
Q psy8894 109 DAEMPLIVCITEGIP 123 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf~ 123 (306)
+.|++. +=.++-|.
T Consensus 72 ~~g~~V-IDlSadfR 85 (313)
T PRK11863 72 NPATRV-IDASTAHR 85 (313)
T ss_pred hCCCEE-EECChhhh
Confidence 999984 44676664
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.006 Score=60.56 Aligned_cols=77 Identities=23% Similarity=0.233 Sum_probs=57.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|+|+|++|.+|....+.+.+.|+++. .++++... . ...|+....+..+.... .|++++++|+....+++++
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~-v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~--aDvVIlavp~~~~~~vl~~ 77 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVI-VTGRDPKKGKEVAKELGVEYANDNIDAAKD--ADIVIISVPINVTEDVIKE 77 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEE-EEECChHHHHHHHHHcCCeeccCHHHHhcc--CCEEEEecCHHHHHHHHHH
Confidence 3799999779999999999999998854 44443211 1 12366656677776655 8999999999999999988
Q ss_pred HHHc
Q psy8894 107 ALDA 110 (306)
Q Consensus 107 ~~~~ 110 (306)
+...
T Consensus 78 l~~~ 81 (437)
T PRK08655 78 VAPH 81 (437)
T ss_pred HHhh
Confidence 8764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=57.83 Aligned_cols=113 Identities=12% Similarity=0.173 Sum_probs=75.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-ce------------ecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-KT------------HLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~~------------i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
++|.|+|+ |..|+.+...|.+.+ +++. ..+..... .. ..++--.+.+.++..+ .|++|-+.|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINAAP 77 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEeCC
Confidence 68999999 999999998887775 7754 44443200 00 1122223356677766 799999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC---Cceec
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC---PGIIA 152 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc---~Gi~~ 152 (306)
+.....+++.|++.|++.+-+ | +-++... ..++.|++.|+.++ |+| .|+.|
T Consensus 78 ~~~~~~i~ka~i~~gv~yvDt-s--~~~~~~~-~~~~~a~~Agit~v-~~~G~dPGi~n 131 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVDT-S--YYEEPPW-KLDEEAKKAGITAV-LGCGFDPGITN 131 (389)
T ss_pred chhhHHHHHHHHHhCCCEEEc-c--cCCchhh-hhhHHHHHcCeEEE-cccCcCcchHH
Confidence 999999999999999997552 3 2233222 23346788887666 554 35555
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0086 Score=56.20 Aligned_cols=113 Identities=11% Similarity=0.131 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHH-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIH- 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~- 105 (306)
++|+|+|. |+||....+++.+.|+++. ..|++.... + -.|.....+..++.+. .|++++++|+.. +.+++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~~V~-v~d~~~~~~~~~~~~g~~~~~s~~~~~~~--aDvVi~~vp~~~~~~~vl~~ 77 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGHQLQ-VFDVNPQAVDALVDKGATPAASPAQAAAG--AEFVITMLPNGDLVRSVLFG 77 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCcccCCHHHHHhc--CCEEEEecCCHHHHHHHHcC
Confidence 37999999 9999999999999999864 667654111 1 1366677788888775 899999999985 444442
Q ss_pred --HHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCc
Q psy8894 106 --EALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPG 149 (306)
Q Consensus 106 --e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~G 149 (306)
.+... .- +.++..+++.++ ..+++.+ ..++.|++++ .|-+-|
T Consensus 78 ~~~i~~~l~~g~lvid~sT~~p~-~~~~l~~-~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 78 ENGVCEGLSRDALVIDMSTIHPL-QTDKLIA-DMQAKGFSMMDVPVGRT 124 (296)
T ss_pred cccHhhcCCCCCEEEECCCCCHH-HHHHHHH-HHHHcCCcEEEccCCCC
Confidence 12221 11 234445666543 3344433 3467787655 555433
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0082 Score=56.00 Aligned_cols=180 Identities=12% Similarity=0.077 Sum_probs=100.2
Q ss_pred EEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH---HHH
Q psy8894 35 CQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI---HEA 107 (306)
Q Consensus 35 VvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~---~e~ 107 (306)
++|. |.||....++|.+.|+++. ..|++.... ...|.....+..++.+. .|++++++|+. .+.+++ +..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advVil~vp~~~~~~~v~~g~~~l 76 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGHPVR-VFDLFPDAVEEAVAAGAQAAASPAEAAEG--ADRVITMLPAGQHVISVYSGDEGI 76 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEeCCChHHHHHHHcCcchH
Confidence 4788 9999999999999999864 556653101 12366677788888876 99999999984 456665 444
Q ss_pred HHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc-cCCCceecCccccccCC-CCC-----------CCCCCCEEE
Q psy8894 108 LDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG-PNCPGIIAPEQCKIGIM-PGH-----------IHQRGCVGV 173 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG-PNc~Gi~~~~~~~~~~~-~~~-----------~~~~G~va~ 173 (306)
... .-..+++-.++.+.+..+++. +.+++.|++++. |=+-|..-........+ ... ...-.++=+
T Consensus 77 ~~~~~~g~~vid~st~~p~~~~~~~-~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~ 155 (288)
T TIGR01692 77 LPKVAKGSLLIDCSTIDPDSARKLA-ELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVH 155 (288)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEe
Confidence 433 223455555666665555544 356778887775 43322211111111100 000 011124555
Q ss_pred EecCh--hhHHHHHHHHHh-CCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 174 VSRSG--TLTYEAVHQTTQ-VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 174 vSqSG--~~~~~~~~~~~~-~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
+.-.| ...-.+.+.... .=.+++..+..+.. .+++..++++.+..-
T Consensus 156 ~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~--~Gld~~~~~~~~~~~ 204 (288)
T TIGR01692 156 CGDHGAGQAAKICNNMLLGISMIGTAEAMALGEK--LGLDPKVLFEIANTS 204 (288)
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhcC
Confidence 54433 211111111111 11245556666777 788888888887754
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.005 Score=57.18 Aligned_cols=115 Identities=16% Similarity=0.259 Sum_probs=81.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-C--eEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-T--KVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~--~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++|+++|+ |+||+.....+.+.| + +.|...||+..-. +-.|+....+-.++.++ .|++++++.|....++
T Consensus 2 ~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~--advv~LavKPq~~~~v 78 (266)
T COG0345 2 MKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEE--ADVVFLAVKPQDLEEV 78 (266)
T ss_pred ceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhh--CCEEEEEeChHhHHHH
Confidence 67999999 999999999999987 2 2444788875211 12355555566666665 8999999999999999
Q ss_pred HHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCCCceecC
Q psy8894 104 IHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc~Gi~~~ 153 (306)
+.++.. ..=+.++-+..|.+-+.+++. +- ...+ |++ ||..-.+.-
T Consensus 79 l~~l~~~~~~~lvISiaAGv~~~~l~~~---l~-~~~vvR~M-PNt~a~vg~ 125 (266)
T COG0345 79 LSKLKPLTKDKLVISIAAGVSIETLERL---LG-GLRVVRVM-PNTPALVGA 125 (266)
T ss_pred HHHhhcccCCCEEEEEeCCCCHHHHHHH---cC-CCceEEeC-CChHHHHcC
Confidence 999975 233456668899987665543 22 3343 544 988755553
|
|
| >PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=56.72 Aligned_cols=110 Identities=17% Similarity=0.289 Sum_probs=81.1
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC-C----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG-G---------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~-~---------- 235 (306)
..|+|++|+-+|+++...++.+...|....-.+-+|..+ ..-.+.+.|+.+.+||++.+|++.+=+. .
T Consensus 255 l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~-~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~ 333 (388)
T PRK00696 255 LDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-TAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGII 333 (388)
T ss_pred cCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 368999999999999999999999988666666665541 3345678899999999999998754321 1
Q ss_pred ---CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 ---GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 ---~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
.. .+|||++.-.| . ..+.....|+++| +...+++++-..++.
T Consensus 334 ~~~~~~~~~kPvv~~~~g-~-------------------~~~~~~~~L~~~Gi~ip~f~~pe~A~~al~ 382 (388)
T PRK00696 334 AAVKEVGVTVPLVVRLEG-T-------------------NVELGKKILAESGLNIIAADTLDDAAQKAV 382 (388)
T ss_pred HHHHhcCCCCcEEEEeCC-C-------------------CHHHHHHHHHHCCCCceecCCHHHHHHHHH
Confidence 12 57999776544 1 1233467799999 889999998766664
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0092 Score=51.58 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCceecCeeccCCHHhhhhc-CCCcEEEEecC-chhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARDA-TGAEATVIYVP-PPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~~-~~iDlavi~vp-~~~~~~~~~e~ 107 (306)
+++|+|+ +..|+..++.|++.|+++++.++.+. .++.+.|+|++.+++++.+. .+.+.+++.++ +..-.++++.+
T Consensus 1 ~~~I~Ga-g~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~~~~~~~i~~~l 79 (201)
T TIGR03570 1 KLVIIGA-GGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGDNKLRRRLFEKL 79 (201)
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCCHHHHHHHHHHH
Confidence 4789999 99999999999888999998876542 35678999999887776542 13677888874 45556677777
Q ss_pred HHcCCCEEE
Q psy8894 108 LDAEMPLIV 116 (306)
Q Consensus 108 ~~~Gi~~vv 116 (306)
.+.+++..-
T Consensus 80 ~~~g~~~~~ 88 (201)
T TIGR03570 80 KAKGYRFAT 88 (201)
T ss_pred HhCCCcceE
Confidence 777765543
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.011 Score=57.67 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=82.9
Q ss_pred CCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C--------
Q psy8894 166 HQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G-------- 235 (306)
Q Consensus 166 ~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~-------- 235 (306)
...|+|++++-+|+++...++.+...|....-++-+|..+ ..-.+.+.++-+.+||++++|++++-+. +
T Consensus 254 ~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a-~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i 332 (386)
T TIGR01016 254 ALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGA-SAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGL 332 (386)
T ss_pred ccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3579999999999999999999999998877788776652 3455678899999999999999865421 1
Q ss_pred ----CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 ----GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 ----~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
.. .+|||++.-.|. ..+.....|+++| +...+++++-...+.
T Consensus 333 ~~a~~~~~~~kPvvv~~~g~--------------------~~~~~~~~L~~~G~~ip~~~~~~~Av~~~~ 382 (386)
T TIGR01016 333 VEALKEVGVNVPVVVRLEGT--------------------NVEEGKKILAESGLNIIFATSMEEAAEKAV 382 (386)
T ss_pred HHHHHhcCCCCcEEEEeCCc--------------------cHHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence 12 238997765442 1233467799999 888888887555543
|
This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0043 Score=59.51 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCceec--C--eeccC-CHHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTHL--D--LPVFN-TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i~--G--ip~y~-sl~el~~~~~iDlavi~vp~~~ 99 (306)
+++.+|+|+||||..|+...+.|.+.++ ++.+..+.+..|+.+. | +++-+ +..++ + ++|++++++|+..
T Consensus 2 ~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~-~--~vD~vFla~p~~~ 78 (336)
T PRK05671 2 SQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDF-S--QVQLAFFAAGAAV 78 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHh-c--CCCEEEEcCCHHH
Confidence 3457899999999999999999986433 4555556655454332 2 11111 12223 3 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 100 AAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+.+.++++.++|++.| =.++-|.
T Consensus 79 s~~~v~~~~~~G~~VI-DlS~~fR 101 (336)
T PRK05671 79 SRSFAEKARAAGCSVI-DLSGALP 101 (336)
T ss_pred HHHHHHHHHHCCCeEE-ECchhhc
Confidence 9999999999999854 4677775
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0069 Score=58.36 Aligned_cols=117 Identities=16% Similarity=0.141 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH-cCCe---EEEeeCCCCCCceec----CeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE-YGTK---VVGGVSPGKGGKTHL----DLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~-~g~~---vv~~VnP~~~g~~i~----Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
.+..+|+|+||+|-.|+...+.|.+ ..|+ +...-..+..|+.+. .+.+.+ +.+++ . ++|+++.++|..
T Consensus 3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~-~--~~Divf~a~~~~ 79 (347)
T PRK06728 3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSF-E--GVDIAFFSAGGE 79 (347)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHh-c--CCCEEEECCChH
Confidence 3456899999999999999999886 4777 444455555555431 123322 23333 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhH-----HHHHHH-HHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLD-----MVKVKH-RLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~-----~~~~~~-~~ar~~gi~iiGPNc~G 149 (306)
.+.+.+.++.++|++.|= .++-|..+. .-++.. ++....+ .+-.|||.-
T Consensus 80 ~s~~~~~~~~~~G~~VID-~Ss~fR~~~~vplvvPEvN~e~i~~~~~-iIanPnC~t 134 (347)
T PRK06728 80 VSRQFVNQAVSSGAIVID-NTSEYRMAHDVPLVVPEVNAHTLKEHKG-IIAVPNCSA 134 (347)
T ss_pred HHHHHHHHHHHCCCEEEE-CchhhcCCCCCCeEeCCcCHHHHhccCC-EEECCCCHH
Confidence 999999999999976433 566664321 001100 1222235 577899963
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.02 Score=55.08 Aligned_cols=113 Identities=15% Similarity=0.094 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--------Ce-EEEeeCC-------------CCCCce-ecC------eeccCCHHhh
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--------TK-VVGGVSP-------------GKGGKT-HLD------LPVFNTVKEA 82 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--------~~-vv~~VnP-------------~~~g~~-i~G------ip~y~sl~el 82 (306)
+|+|+|+ |+.|++....+.+.| .+ .+|..++ .+.... ..| +....+++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 5899999 999999988887767 66 3443311 110010 112 3455678887
Q ss_pred hhcCCCcEEEEecCchhHHHHHHHHHHcC--CCEEEEecCCCChh--H---HHHHHHHHHHhcCC-eEEccCCC
Q psy8894 83 RDATGAEATVIYVPPPGAAKAIHEALDAE--MPLIVCITEGIPQL--D---MVKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~~~~~~e~~~~G--i~~vvi~t~Gf~e~--~---~~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.+. .|++++++|+....++++++...- -+.++..+-|+..+ . .-+..++.. ...+ -+.|||-.
T Consensus 80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A 150 (342)
T TIGR03376 80 AKG--ADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLA 150 (342)
T ss_pred Hhc--CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchH
Confidence 765 899999999999999998876531 23466689999655 2 122222222 2234 46688753
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=59.23 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=73.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee------cC--eeccCCHHhhhhc-CCCcEEEEecCc-hh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH------LD--LPVFNTVKEARDA-TGAEATVIYVPP-PG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i------~G--ip~y~sl~el~~~-~~iDlavi~vp~-~~ 99 (306)
.+|+|+|. |.||+...++|.+.|+++. ..|.+... ++. .| +..+.+++|+.+. .++|++++++|+ +.
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 36999999 9999999999999999964 55654311 011 14 3467789888752 138988888665 56
Q ss_pred HHHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 100 AAKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
+.++++++... .- +.++..++++. .+..++.. .+++.|++.++-.-.|
T Consensus 80 v~~vi~~l~~~L~~g~iIID~gn~~~-~dt~~r~~-~l~~~Gi~fldapVSG 129 (470)
T PTZ00142 80 VDETIDNLLPLLEKGDIIIDGGNEWY-LNTERRIK-RCEEKGILYLGMGVSG 129 (470)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCH-HHHHHHHH-HHHHcCCeEEcCCCCC
Confidence 66777776643 22 33333444543 33344443 4577899888655444
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0052 Score=58.86 Aligned_cols=82 Identities=18% Similarity=0.129 Sum_probs=63.2
Q ss_pred EEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC----------c------------eecCeeccCCHHhhhhcCCCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG----------K------------THLDLPVFNTVKEARDATGAE 89 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g----------~------------~i~Gip~y~sl~el~~~~~iD 89 (306)
|+|+|+ |+.|+.+.+.+.+. ++++++..++.... + +-.|++++.+++++++. +|
T Consensus 1 VaInG~-GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~--vD 77 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK--VD 77 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc--CC
Confidence 689999 99999888876654 78888665543210 0 11246777789999865 99
Q ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++.++|........+...++|.|.+++
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~ 105 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQ 105 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEE
Confidence 9999999999999999999999999775
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0089 Score=58.02 Aligned_cols=114 Identities=12% Similarity=0.051 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCChHHHHHH-HHcCCe---EEEeeCCCCCCcee---cC--eeccC--CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQA-IEYGTK---VVGGVSPGKGGKTH---LD--LPVFN--TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l-~~~g~~---vv~~VnP~~~g~~i---~G--ip~y~--sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+|||+||+|-.|+...+.+ .+..|. ++. +.-...|+.. .| ..++. +.+++ . ++|+++.++|.+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~-~ss~~sg~~~~~f~g~~~~v~~~~~~~~~-~--~~Divf~a~~~~~ 77 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVF-FSTSQAGGAAPSFGGKEGTLQDAFDIDAL-K--KLDIIITCQGGDY 77 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEE-ecchhhCCcccccCCCcceEEecCChhHh-c--CCCEEEECCCHHH
Confidence 47999999999999999844 445776 554 3332223322 22 23333 12333 2 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCCChhH----------HHHHHHHHHHhcCC-eEEccCCCce
Q psy8894 100 AAKAIHEALDAEMPLIVC-ITEGIPQLD----------MVKVKHRLIRQSKS-RLIGPNCPGI 150 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi-~t~Gf~e~~----------~~~~~~~~ar~~gi-~iiGPNc~Gi 150 (306)
+.+...++.++|++.+|+ .++-|..++ .+.+. . ..+.|+ .+..|||.-+
T Consensus 78 s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~-~-~~~~g~~iIanPnC~tt 138 (369)
T PRK06598 78 TNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVID-D-ALANGVKTFVGGNCTVS 138 (369)
T ss_pred HHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHH-h-hhhcCCCEEEcCChHHH
Confidence 999999999999874443 455443221 12221 1 224565 5779999633
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0078 Score=57.91 Aligned_cols=90 Identities=21% Similarity=0.113 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe-eCCCCCCceec---Cee-------------cc-CCHHhhhhcCCCcE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG-VSPGKGGKTHL---DLP-------------VF-NTVKEARDATGAEA 90 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~-VnP~~~g~~i~---Gip-------------~y-~sl~el~~~~~iDl 90 (306)
+.+|+|+|++|..|+...+.|.++ .+++++. .++...|+.+. +.. +- .+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 378999999999999999988887 5577755 45544343332 111 10 023333 2 4899
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+++++|.....+.++++.+.|++.|. .+.-|.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vID-ls~~fR 111 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFS-NASAHR 111 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEE-CCchhc
Confidence 99999999999999999999998544 566553
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=54.80 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=60.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCc---eecCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGK---THLDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~---~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+|+|||. |.||....+.|.+.|+. .+..+|++.... ...|+. .+.+.+++.+ .|++|+++|+....+++++
T Consensus 2 ~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---aD~Vilavp~~~~~~~~~~ 77 (275)
T PRK08507 2 KIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELKK---CDVIFLAIPVDAIIEILPK 77 (275)
T ss_pred EEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHhc---CCEEEEeCcHHHHHHHHHH
Confidence 6999998 99999999999988863 344677653110 113432 3446677643 8999999999999999998
Q ss_pred HHHcCCCEEEEecCCCChhH
Q psy8894 107 ALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
+....-..++ +..|-....
T Consensus 78 l~~l~~~~iv-~d~gs~k~~ 96 (275)
T PRK08507 78 LLDIKENTTI-IDLGSTKAK 96 (275)
T ss_pred HhccCCCCEE-EECccchHH
Confidence 7652223344 455554333
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.01 Score=56.73 Aligned_cols=90 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCC-------------HHhhhhcCCCcEEEEec
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNT-------------VKEARDATGAEATVIYV 95 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~s-------------l~el~~~~~iDlavi~v 95 (306)
..+|+|+|+||-.|....+.|..+ ..++......+..|+.+.. .|++ .+++ +..++|++++++
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~--~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSD--VHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHH--hCcccccccccccccCChhhh-hcccCCEEEEec
Confidence 468999999999999999998887 7775433333333443221 1222 2333 222489999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
|...+.+.+.+..+.|++ |+=.|+-|.
T Consensus 79 Phg~s~~~v~~l~~~g~~-VIDLSadfR 105 (349)
T COG0002 79 PHGVSAELVPELLEAGCK-VIDLSADFR 105 (349)
T ss_pred CchhHHHHHHHHHhCCCe-EEECCcccc
Confidence 999999999999999999 455677664
|
|
| >PRK06091 membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.95 Score=46.20 Aligned_cols=239 Identities=14% Similarity=0.123 Sum_probs=132.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEec--CchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYV--PPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~v--p~~~~~~~~ 104 (306)
++-+|++|+.||..+......+.+.|.-+-..|.-... .+++.|+-.-.-|+-+.++.+.++++++. |.+...+-+
T Consensus 192 ~~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~~f 271 (555)
T PRK06091 192 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRLKI 271 (555)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHHHH
Confidence 47889999999998888777777764433233333210 01233544444456665554678888887 334444433
Q ss_pred -HHHHHcCCCEEEEecCCCChhH-----------HHHHHHHHHHhcC-CeEEccCCCceecCccccccCCCCCCCCCCCE
Q psy8894 105 -HEALDAEMPLIVCITEGIPQLD-----------MVKVKHRLIRQSK-SRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCV 171 (306)
Q Consensus 105 -~e~~~~Gi~~vvi~t~Gf~e~~-----------~~~~~~~~ar~~g-i~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~v 171 (306)
+.+.+.+.+.|+ +-.|-++.. .+++.. ++.... ......+ .+ .+..+.|
T Consensus 272 l~aar~~~KPVVv-lk~Grs~~g~~q~GVi~a~tleEl~~-~A~~la~~~~~~~~--------------~~--~~~~~~i 333 (555)
T PRK06091 272 INAMKATGKPVVA-LFLGYTPAVARDENVWFASTLDEAAR-LACLLSRVTAQRNA--------------IL--PVSQGFI 333 (555)
T ss_pred HHHHhhCCCCEEE-EEecCCchhhhcCCeEEeCCHHHHHH-HHHHHhcccccccc--------------cc--cccCCee
Confidence 333445666555 555655532 222221 222111 1110000 11 1233334
Q ss_pred EEEecChhhHHHHHHHHHhCCCceE---------E-------EEecCCCCCC------CCCH---HHHHHHhhcCCCccE
Q psy8894 172 GVVSRSGTLTYEAVHQTTQVGLGQT---------L-------CVGIGGDPFN------GTNF---IDCLEVFLKDPETKG 226 (306)
Q Consensus 172 a~vSqSG~~~~~~~~~~~~~g~g~s---------~-------~vs~Gn~~~~------dv~~---~d~l~~l~~D~~t~~ 226 (306)
==.---|+++.+.+ .+.....++. . +|-.|-+.|. -+|. .+.+.-.++||+|.+
T Consensus 334 rGly~GGTL~~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~V 412 (555)
T PRK06091 334 CGLYTGGTLAAEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRV 412 (555)
T ss_pred EEEecCchHHHHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceE
Confidence 33444688998887 5544444433 2 3444443211 1222 345666678999999
Q ss_pred EEEEEee-CC-------------------C--CCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCe
Q psy8894 227 IILIGEI-GG-------------------G--PNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVI 284 (306)
Q Consensus 227 I~ly~E~-~~-------------------~--~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi 284 (306)
|+|-+.- .+ + .+.-+||+.-.|+-.. +.+...-.+.|+++|++
T Consensus 413 illD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~D---------------pQ~~~~q~~~L~~aGv~ 477 (555)
T PRK06091 413 LLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERD---------------PQCRSQQIATLEDAGIA 477 (555)
T ss_pred EEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCC---------------CcCHHHHHHHHHhCCeE
Confidence 9998653 23 1 1224566666676532 12444446899999999
Q ss_pred EeCCHhHHHHHHHHHHH
Q psy8894 285 VTRSPAQMGNELLKEMK 301 (306)
Q Consensus 285 ~~~~~~el~~~~~~~~~ 301 (306)
+++|..+-...+..++.
T Consensus 478 v~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 478 VVDSLPEATLLAAALIR 494 (555)
T ss_pred EEcCcHHHHHHHHHHhh
Confidence 99999999888877664
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.016 Score=56.88 Aligned_cols=95 Identities=20% Similarity=0.243 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-eeccCCHHhhhhcCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---------------------LD-LPVFNTVKEARDATGA 88 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---------------------~G-ip~y~sl~el~~~~~i 88 (306)
+|+|+|. |.+|......|.+.|++++ ++|++... +.+ .| +....+++++... .
T Consensus 2 kI~vIGl-G~~G~~lA~~La~~G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~--a 77 (411)
T TIGR03026 2 KIAVIGL-GYVGLPLAALLADLGHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD--A 77 (411)
T ss_pred EEEEECC-CchhHHHHHHHHhcCCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh--C
Confidence 6999999 9999998889999999976 45543210 000 13 4455567776554 8
Q ss_pred cEEEEecCchh----------HHHHHHHHHHc-CCCEEEEecCCCChhHHHHH
Q psy8894 89 EATVIYVPPPG----------AAKAIHEALDA-EMPLIVCITEGIPQLDMVKV 130 (306)
Q Consensus 89 Dlavi~vp~~~----------~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~ 130 (306)
|++++++|... +.++++...+. .-..+++..+.++....+++
T Consensus 78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l 130 (411)
T TIGR03026 78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEV 130 (411)
T ss_pred CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHH
Confidence 99999999763 55666655542 22334555555544433333
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0084 Score=56.24 Aligned_cols=113 Identities=19% Similarity=0.337 Sum_probs=70.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-----cCeecc--CCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-----LDLPVF--NTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-----~Gip~y--~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++++|+|+ |++|+...+.++.+|+++. .+|++. +.. .|...+ .++.++..+ .|+++.++|......
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~~V~-v~~R~~--~~~~~~~~~g~~~~~~~~l~~~l~~--aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGARVF-VGARSS--ADLARITEMGLIPFPLNKLEEKVAE--IDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCCEEE-EEeCCH--HHHHHHHHCCCeeecHHHHHHHhcc--CCEEEECCChHHhCH
Confidence 579999999 9999999999999999864 666653 211 233322 345555554 999999998764332
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCc
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPE 154 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~ 154 (306)
-.-+..+.+ ..++.+++.-.+.+. +.||+.|++.+ -|+-.|.+.|.
T Consensus 225 ~~l~~~k~~-aliIDlas~Pg~tdf-----~~Ak~~G~~a~~~~glPg~~ap~ 271 (287)
T TIGR02853 225 DVLSKLPKH-AVIIDLASKPGGTDF-----EYAKKRGIKALLAPGLPGIVAPK 271 (287)
T ss_pred HHHhcCCCC-eEEEEeCcCCCCCCH-----HHHHHCCCEEEEeCCCCcccCch
Confidence 211222222 223334543333343 25789998544 68888888764
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0054 Score=54.48 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=45.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
.+|+|||.+|+||+...+.+++.|+.+. + . +.|++++++|.....+++++..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-----------------------~-~--~~DlVilavPv~~~~~~i~~~~ 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-----------------------I-K--KADHAFLSVPIDAALNYIESYD 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-----------------------E-C--CCCEEEEeCCHHHHHHHHHHhC
Confidence 3799999999999999999999998863 1 2 3899999999999999998864
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.01 Score=58.73 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCC-CceecCeeccCCHHhhhh---cCCCcEEEEecCchh--
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKG-GKTHLDLPVFNTVKEARD---ATGAEATVIYVPPPG-- 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~-g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~~-- 99 (306)
..+++.|+|+ |..+....+.+++ .|+++++.++++.. +..+.|+|++.+++++++ ++++|.++++.|...
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~~~~ 202 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEA 202 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcccHH
Confidence 3467999999 7778877787765 37899988886531 235789999988776653 457999999988644
Q ss_pred -HHHHHHHHHHcCCCEEEE
Q psy8894 100 -AAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vvi 117 (306)
..+.+++|.+.|++..++
T Consensus 203 ~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 203 RILELLLQLRDLGVDVRLV 221 (445)
T ss_pred HHHHHHHHHHhcCCEEEEe
Confidence 346888999999985543
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.012 Score=58.86 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--c-----CeeccCCHHhhhhc-CCCcEEEEecCc-hhHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--L-----DLPVFNTVKEARDA-TGAEATVIYVPP-PGAA 101 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~-----Gip~y~sl~el~~~-~~iDlavi~vp~-~~~~ 101 (306)
.|++||. |+||+...++|.+.|++++ ..|++... ++. . ++..+.+++++.+. ..+|++++++|+ +.+.
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 3889999 9999999999999999965 55654310 111 1 25677788887742 248999999999 6677
Q ss_pred HHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 102 KAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 102 ~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
++++++... .- +.++-.++.... +..++.+ .+++.|++.++---.|
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~-~t~~~~~-~l~~~gi~fvdapVsG 126 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYP-DTERRYK-ELKAKGILFVGSGVSG 126 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHH-HHHHHHH-HHHhcCCEEEcCCCCC
Confidence 777776653 12 333334443333 3333333 3567788888554444
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0099 Score=56.35 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.+|+|+|+||-.|....+.|.++ .+++++....+. . ..+ +.+++.++ +|++++++|...+.+.+.++.+
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~---~~~-~~~~~~~~--~D~vFlalp~~~s~~~~~~~~~ 71 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K---DAA-ERAKLLNA--ADVAILCLPDDAAREAVSLVDN 71 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c---CcC-CHhHhhcC--CCEEEECCCHHHHHHHHHHHHh
Confidence 47999999999999999999987 677765433221 0 011 34455444 9999999999999999999989
Q ss_pred cCCCEEEEecCCCC
Q psy8894 110 AEMPLIVCITEGIP 123 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~ 123 (306)
.|++. +=.++-|.
T Consensus 72 ~g~~V-IDlSadfR 84 (310)
T TIGR01851 72 PNTCI-IDASTAYR 84 (310)
T ss_pred CCCEE-EECChHHh
Confidence 99884 44676553
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.018 Score=54.56 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC----------Cce-e------cCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG----------GKT-H------LDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~----------g~~-i------~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
+|+|+|+ |.+|......|.+.|.++. .++++.. +.. . .+++.+.++++.... +.|+++++
T Consensus 2 kI~IiGa-Ga~G~ala~~L~~~g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliiia 78 (326)
T PRK14620 2 KISILGA-GSFGTAIAIALSSKKISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIILA 78 (326)
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEEE
Confidence 6999999 9999999989988888854 4444210 001 1 123355566665421 38999999
Q ss_pred cCchhHHHHHHHHHH-c-C-CCEEEEecCCCCh
Q psy8894 95 VPPPGAAKAIHEALD-A-E-MPLIVCITEGIPQ 124 (306)
Q Consensus 95 vp~~~~~~~~~e~~~-~-G-i~~vvi~t~Gf~e 124 (306)
+|+....++++++.. . + -..+++++.|+..
T Consensus 79 vks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 79 VPTQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred eCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 999999999999876 3 2 2346778899955
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.078 Score=49.76 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCc-eecCeeccC-------CHHhhhhcCCCcEEEEecCch---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGK-THLDLPVFN-------TVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~-~i~Gip~y~-------sl~el~~~~~iDlavi~vp~~--- 98 (306)
++|.|.|++|..|+...+.|.+.|+++.+.+- +..... ...|+.++. ++.++.+ ++|+++-+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~~~~ 78 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSRPSD 78 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCCCCC
Confidence 37999999999999999999999999875553 221000 112333321 2344443 489988765421
Q ss_pred ----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 79 LYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred ccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2356778888899998876555
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.012 Score=58.25 Aligned_cols=89 Identities=15% Similarity=0.239 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCC--CCceecCeeccCCHHhhhh---cCCCcEEEEecCchh--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARD---ATGAEATVIYVPPPG-- 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~~-- 99 (306)
.+++.|+|+ |..+....+.+++ .||++++.++.+. .+.. .|+|++.+++++++ ++++|.++++.|...
T Consensus 128 ~~rvLIiGa-g~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~-~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~~~~~ 205 (451)
T TIGR03023 128 LRRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGV-RGVPVLGKLDDLEELIREGEVDEVYIALPLAAED 205 (451)
T ss_pred CCcEEEEeC-CHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc-CCCCccCCHHHHHHHHHhcCCCEEEEeeCcccHH
Confidence 467999999 7788877887765 3789998886432 2233 78999988776654 467999999988743
Q ss_pred -HHHHHHHHHHcCCCEEEEecCCC
Q psy8894 100 -AAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
..+++++|.+.|++..++ +.+
T Consensus 206 ~~~~ll~~~~~~gv~V~vv--P~~ 227 (451)
T TIGR03023 206 RILELLDALEDLTVDVRLV--PDL 227 (451)
T ss_pred HHHHHHHHHHhcCCEEEEe--Cch
Confidence 567888898999986554 554
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.017 Score=58.18 Aligned_cols=116 Identities=10% Similarity=-0.004 Sum_probs=74.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e-e-----cCee---ccCCHHhhhhc-CCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T-H-----LDLP---VFNTVKEARDA-TGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~-i-----~Gip---~y~sl~el~~~-~~iDlavi~vp~~~ 99 (306)
.+|++||. |.||+...++|.+.||++. +-|+..... + . .|.. .+.+++|+.+. ..+|++++++|...
T Consensus 7 ~~IG~IGL-G~MG~~mA~nL~~~G~~V~-V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~ 84 (493)
T PLN02350 7 SRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGA 84 (493)
T ss_pred CCEEEEee-HHHHHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcH
Confidence 46999999 9999999999999999965 556653111 1 1 1432 67789998762 23899999999876
Q ss_pred HHH-HHHHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 100 AAK-AIHEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 100 ~~~-~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
+.+ +++.+... ....+++ +++.. .++..++. +.+++.|++.++---.|-
T Consensus 85 aV~~Vi~gl~~~l~~G~iiID~sT~~-~~~t~~~~-~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 85 PVDQTIKALSEYMEPGDCIIDGGNEW-YENTERRI-KEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCC-HHHHHHHH-HHHHHcCCeEEeCCCcCC
Confidence 654 44555543 2233443 33333 33344443 346788988886544443
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0079 Score=55.87 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecC-eeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLD-LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+|+|||. |.+|......+.+.|+++. .++++.... . -.| +....+..+... +.|++++++|+....+++++.
T Consensus 2 ~I~IIG~-G~mG~sla~~L~~~g~~V~-~~d~~~~~~~~a~~~g~~~~~~~~~~~~~--~aDlVilavp~~~~~~~~~~l 77 (279)
T PRK07417 2 KIGIVGL-GLIGGSLGLDLRSLGHTVY-GVSRRESTCERAIERGLVDEASTDLSLLK--DCDLVILALPIGLLLPPSEQL 77 (279)
T ss_pred eEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCcccccCCHhHhc--CCCEEEEcCCHHHHHHHHHHH
Confidence 6999998 9999999999998899864 666653111 1 112 222322223333 389999999999999999888
Q ss_pred HHc-CCCEEEEecCCCC
Q psy8894 108 LDA-EMPLIVCITEGIP 123 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~ 123 (306)
... .-+.++.-+++..
T Consensus 78 ~~~l~~~~ii~d~~Svk 94 (279)
T PRK07417 78 IPALPPEAIVTDVGSVK 94 (279)
T ss_pred HHhCCCCcEEEeCcchH
Confidence 764 3344443334443
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.036 Score=53.89 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=59.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..++|+|+|..|.||+...+.+.+.|+++. .++++. +.+.+++... .|++++++|.....+++++..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~~----------~~~~~~~~~~--aDlVilavP~~~~~~~~~~l~ 163 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQDD----------WDRAEDILAD--AGMVIVSVPIHLTEEVIARLP 163 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCCc----------chhHHHHHhc--CCEEEEeCcHHHHHHHHHHHh
Confidence 347899999669999999999999999864 666542 1345666554 899999999999999998876
Q ss_pred HcCCCEEEEecCC
Q psy8894 109 DAEMPLIVCITEG 121 (306)
Q Consensus 109 ~~Gi~~vvi~t~G 121 (306)
...-..+| +..|
T Consensus 164 ~l~~~~iv-~Dv~ 175 (374)
T PRK11199 164 PLPEDCIL-VDLT 175 (374)
T ss_pred CCCCCcEE-EECC
Confidence 64434444 3443
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.017 Score=55.81 Aligned_cols=110 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCc-eecCeec----cCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGK-THLDLPV----FNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~-~i~Gip~----y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|||. |.+|....+.+.+.|++ .++..+|+.... .-.+..+ ..++.++..+ .|++++++|+....+++
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--aDlVilavP~~~~~~vl 77 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAE--ADLIVLAVPVDATAALL 77 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcC--CCEEEEeCCHHHHHHHH
Confidence 46999999 99999999999999987 344566653100 0112222 2456666554 99999999999999999
Q ss_pred HHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 HEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 ~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
++.... .-+.++.-.++....-.+++. +. ...+.+++|-
T Consensus 78 ~~l~~~~l~~~~ivtDv~SvK~~i~~~~~-~~-~~~~~~~ig~ 118 (359)
T PRK06545 78 AELADLELKPGVIVTDVGSVKGAILAEAE-AL-LGDLIRFVGG 118 (359)
T ss_pred HHHhhcCCCCCcEEEeCccccHHHHHHHH-Hh-cCCCCeEEee
Confidence 888752 333444333444433222221 11 1345577763
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=52.68 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=59.6
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Cce--ecCeec----cCCHHhhhhc-CCCcEEEEecC------c
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKT--HLDLPV----FNTVKEARDA-TGAEATVIYVP------P 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~--i~Gip~----y~sl~el~~~-~~iDlavi~vp------~ 97 (306)
|+|+|++|+.|+.+.+.|++.++++.+.+.+... .++ -.|..+ |.+.+++.+. .++|.++++++ .
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 7899999999999999999999998877765420 000 123221 3344444332 36999999998 3
Q ss_pred hhHHHHHHHHHHcCCCEEEEec
Q psy8894 98 PGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
+....+++.|.+.||+.++ ++
T Consensus 81 ~~~~~li~Aa~~agVk~~v-~s 101 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFV-PS 101 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEE-ES
T ss_pred hhhhhHHHhhhccccceEE-EE
Confidence 4667788999999999987 44
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=56.33 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--c-CCeEEEeeCCCCCCceec----CeeccCCHHhhh-hcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--Y-GTKVVGGVSPGKGGKTHL----DLPVFNTVKEAR-DATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--~-g~~vv~~VnP~~~g~~i~----Gip~y~sl~el~-~~~~iDlavi~vp~~~~ 100 (306)
+..+|+|+||||-.|....+.|.+ + .+++...-..+..|+.+. .+++. ++++.. . ++|++++++|...+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~--~~Dvvf~a~p~~~s 79 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWS--QAQLAFFVAGREAS 79 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhcc--CCCEEEECCCHHHH
Confidence 467899999999999999999988 4 455554444444455432 23333 444442 2 48999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+.++.++|++. +=.++-|.
T Consensus 80 ~~~~~~~~~~g~~V-IDlS~~fR 101 (336)
T PRK08040 80 AAYAEEATNAGCLV-IDSSGLFA 101 (336)
T ss_pred HHHHHHHHHCCCEE-EECChHhc
Confidence 99999999999984 44676664
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.015 Score=54.73 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCce---ecCe--eccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKT---HLDL--PVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~---i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |.+|....+.+.+.|+ ..+..++++....+ -.|. .+..+.++..+. .|++|+++|+....+++
T Consensus 7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~--aDvViiavp~~~~~~v~ 83 (307)
T PRK07502 7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKG--ADLVILCVPVGASGAVA 83 (307)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcC--CCEEEECCCHHHHHHHH
Confidence 57999998 9999999999988886 23346676531001 1232 234566666654 99999999999888888
Q ss_pred HHHHHc-CCCEEEEecCCC
Q psy8894 105 HEALDA-EMPLIVCITEGI 122 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf 122 (306)
++.... .-+.+++-..+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~ 102 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSV 102 (307)
T ss_pred HHHHhhCCCCCEEEeCccc
Confidence 776542 333444333343
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.046 Score=51.33 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|++||. |.||.--.++|.+.|+++. .-|.+..- . ...|...+.+..|+.+. .|++|.++|.......+-.
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~~v~-v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~--aDvVitmv~~~~~V~~V~~ 76 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGHEVT-VYNRTPEKAAELLAAAGATVAASPAEAAAE--ADVVITMLPDDAAVRAVLF 76 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCCEEE-EEeCChhhhhHHHHHcCCcccCCHHHHHHh--CCEEEEecCCHHHHHHHHh
Confidence 47999999 9999999999999999954 44443211 1 13488999999888876 9999999998766554432
Q ss_pred ----HHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCcc
Q psy8894 107 ----ALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPEQ 155 (306)
Q Consensus 107 ----~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~ 155 (306)
..+ .....+||-.+-.+.+...++. +.+++.|++.+ .|=+-|......
T Consensus 77 g~~g~~~~~~~G~i~IDmSTisp~~a~~~a-~~~~~~G~~~lDAPVsGg~~~A~~ 130 (286)
T COG2084 77 GENGLLEGLKPGAIVIDMSTISPETARELA-AALAAKGLEFLDAPVSGGVPGAAA 130 (286)
T ss_pred CccchhhcCCCCCEEEECCCCCHHHHHHHH-HHHHhcCCcEEecCccCCchhhhh
Confidence 333 2234445433334444444443 45678887555 777766665543
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0057 Score=57.14 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------------------ecC-eeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------------------HLD-LPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------------------i~G-ip~y~sl~el 82 (306)
-++|+|+|+ |.||......+.+.|++++ .+|++....+ ..+ +.+..+.+++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEEL 81 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHh
Confidence 367999999 9999999999999999875 6666531100 001 2233345443
Q ss_pred hhcCCCcEEEEecC--chhHHHHHHHHHHc-CCCEEEE-ecCCCChhHHH
Q psy8894 83 RDATGAEATVIYVP--PPGAAKAIHEALDA-EMPLIVC-ITEGIPQLDMV 128 (306)
Q Consensus 83 ~~~~~iDlavi~vp--~~~~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~ 128 (306)
+ +.|+++.++| ++.-..++.++.+. .-..+++ -|++++..+++
T Consensus 82 -~--~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~ 128 (295)
T PLN02545 82 -R--DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLA 128 (295)
T ss_pred -C--CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence 3 3899999999 66666677766553 2233443 47788655543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.012 Score=52.68 Aligned_cols=91 Identities=20% Similarity=0.139 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--------e--cCe--ecc-CCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--------H--LDL--PVF-NTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--------i--~Gi--p~y-~sl~el~~~~~iDlavi~vp 96 (306)
++|+|+|.+|++|+...+.+.+.|++++ ..+++.... . + .|+ .+. .+..+..+. .|++++++|
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~--aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR--ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc--CCEEEEECC
Confidence 3699998559999999999999898864 344432000 0 0 121 111 244555554 899999999
Q ss_pred chhHHHHHHHHHHc-CCCEEEEecCCCCh
Q psy8894 97 PPGAAKAIHEALDA-EMPLIVCITEGIPQ 124 (306)
Q Consensus 97 ~~~~~~~~~e~~~~-Gi~~vvi~t~Gf~e 124 (306)
+....++++++... .-+.++-.+.|++.
T Consensus 78 ~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 78 WDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 99999998887542 22555557778764
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0043 Score=61.47 Aligned_cols=118 Identities=14% Similarity=0.237 Sum_probs=77.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-----CCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-----KGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-----~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+.++|+|+|. |..|+....+|+..|.+++.++-+. ..+-+ -.|+++ .+++|+... .|++++.+|...
T Consensus 34 LkgKtIaIIGy-GSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~--ADvVviLlPDt~ 109 (487)
T PRK05225 34 LKGKKIVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQ--ADLVINLTPDKQ 109 (487)
T ss_pred hCCCEEEEEcc-CHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHh--CCEEEEcCChHH
Confidence 34589999999 9999988889999999976554432 21112 257766 468888765 899999999985
Q ss_pred HHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 100 AAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 100 ~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
...+-++... ..-...+.|+.||.-.... ...-+.-++-++-|-|+|=..
T Consensus 110 q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~---i~~~~dvdVimvAPKgpG~~v 160 (487)
T PRK05225 110 HSDVVRAVQPLMKQGAALGYSHGFNIVEVG---EQIRKDITVVMVAPKCPGTEV 160 (487)
T ss_pred HHHHHHHHHhhCCCCCEEEecCCceeeeCc---eeCCCCCcEEEECCCCCCchH
Confidence 3333333332 3556778899999733110 012233445667777777543
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.036 Score=53.92 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=55.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
..+|+|||.+|.+|....+.|++. +++++ ++|+.. + ...++++...+ .|++++|+|.....+++++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d---~-----~~~~~~~~v~~--aDlVilavPv~~~~~~l~~l~ 72 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD---P-----GSLDPATLLQR--ADVLIFSAPIRHTAALIEEYV 72 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc---c-----ccCCHHHHhcC--CCEEEEeCCHHHHHHHHHHHh
Confidence 468999999999999999998874 77765 788752 1 12345666554 999999999999999999998
Q ss_pred Hc
Q psy8894 109 DA 110 (306)
Q Consensus 109 ~~ 110 (306)
..
T Consensus 73 ~~ 74 (370)
T PRK08818 73 AL 74 (370)
T ss_pred hh
Confidence 74
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.029 Score=53.61 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=68.4
Q ss_pred EEEEEcCCCCCChHHHHHHHH------c--CCeEEEeeCCCCC-----Ccee---------cCeecc--C--CHHhhhhc
Q psy8894 32 KVICQGFTGKQGTFHSKQAIE------Y--GTKVVGGVSPGKG-----GKTH---------LDLPVF--N--TVKEARDA 85 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~------~--g~~vv~~VnP~~~-----g~~i---------~Gip~y--~--sl~el~~~ 85 (306)
+|+|+|+ |+.|+...+.+.+ + ++++++..|.+.. |-.+ ..+..| . +++++.+.
T Consensus 2 rVaIiGf-G~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 2 RISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred EEEEECC-CHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 7999999 9999998887665 2 5667766553310 0000 011223 2 46666543
Q ss_pred CCCcEEEEecCch----hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 86 TGAEATVIYVPPP----GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 86 ~~iDlavi~vp~~----~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
++|++|.++|.. .....+++++++|++.|. ..-|. -...-+.+.++|+++|.++.=--+.|
T Consensus 81 -~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT-aNKga-lA~~~~eL~~lA~~~g~~~~~eatV~ 145 (326)
T PRK06392 81 -KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT-ANKSG-LANHWHDIMDSASKNRRIIRYEATVA 145 (326)
T ss_pred -CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc-CCHHH-HHhhHHHHHHHHHHcCCeEEEeeeee
Confidence 599999999742 256778999999999543 12121 11111233458899987766333343
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.029 Score=53.05 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||.. .+ .|. +.|.+++++..+ .|++++++|...
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~~V~-~~~r~~--~~-~~~~~~~~~l~ell~~--aDiv~~~lp~t~ 185 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGMNIY-AYTRSY--VN-DGISSIYMEPEDIMKK--SDFVLISLPLTD 185 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCC--cc-cCcccccCCHHHHHhh--CCEEEECCCCCc
Confidence 4589999999 9999999998888899986 678764 22 233 347899999876 999999999644
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.01 Score=55.70 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee-------cC--------------eeccCCHHhhhhc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH-------LD--------------LPVFNTVKEARDA 85 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i-------~G--------------ip~y~sl~el~~~ 85 (306)
++-++|+|+|+ |.||......+.+.|++++ .++++.... .. .| +....+++++.+.
T Consensus 2 ~~~~~I~vIGa-G~mG~~iA~~l~~~g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (311)
T PRK06130 2 NPIQNLAIIGA-GTMGSGIAALFARKGLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG 79 (311)
T ss_pred CCccEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc
Confidence 44578999999 9999999888988899865 556543100 00 11 2234456665554
Q ss_pred CCCcEEEEecCchh--HHHHHHHHHHc-CCCEEE-EecCCCChh
Q psy8894 86 TGAEATVIYVPPPG--AAKAIHEALDA-EMPLIV-CITEGIPQL 125 (306)
Q Consensus 86 ~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vv-i~t~Gf~e~ 125 (306)
.|++++++|++. ..+++.++... .-+.++ ..|+|.+-+
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 899999999875 45666665442 223333 356677543
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.032 Score=53.31 Aligned_cols=115 Identities=15% Similarity=0.070 Sum_probs=71.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEe-eCCCCCCce---ecC--eeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGG-VSPGKGGKT---HLD--LPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~-VnP~~~g~~---i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|+|++|..|+...+.|.+..| +.+.+ -.++..|++ ..| +++-.+..+.....++|+++.+.+.+...+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~ 81 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE 81 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence 6899999999999999998888544 32222 233333443 111 233333333333335999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChh-H---------HHHHHHHHHHhcCCeEEccCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQL-D---------MVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~-~---------~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
...++.++|+-.|= -++-|.-+ | .+.+. +. +++|.-+.+|||.
T Consensus 82 ~~p~~~~~G~~VId-nsSa~Rm~~DVPLVVPeVN~~~l~-~~-~~rg~IianpNCs 134 (334)
T COG0136 82 VEPKAAEAGCVVID-NSSAFRMDPDVPLVVPEVNPEHLI-DY-QKRGFIIANPNCS 134 (334)
T ss_pred HHHHHHHcCCEEEe-CCcccccCCCCCEecCCcCHHHHH-hh-hhCCCEEECCChH
Confidence 99999999944322 34444322 2 12222 22 3355677899996
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.022 Score=55.26 Aligned_cols=118 Identities=11% Similarity=0.008 Sum_probs=70.6
Q ss_pred cEEEEEcCCCCCChHHHHHHH-HcCCeE--EEeeCC-CCCCcee--cCee--ccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI-EYGTKV--VGGVSP-GKGGKTH--LDLP--VFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~-~~g~~v--v~~VnP-~~~g~~i--~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++|||+||+|-.|+...+.|. +..|.+ +.+... +..|+.+ .|.. +. ++++...-.++|+++.+.+.+.+.+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~-~~~~~~~~~~vDivffa~g~~~s~~ 79 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ-DAFDIDALKALDIIITCQGGDYTNE 79 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEE-cCcccccccCCCEEEEcCCHHHHHH
Confidence 479999999999999999888 456651 123333 3323221 1211 11 2222101124999999999999999
Q ss_pred HHHHHHHcCCCEEEE-ecCCCChh-H--------HHHHHHHHHHhcCCe-EEccCCCce
Q psy8894 103 AIHEALDAEMPLIVC-ITEGIPQL-D--------MVKVKHRLIRQSKSR-LIGPNCPGI 150 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi-~t~Gf~e~-~--------~~~~~~~~ar~~gi~-iiGPNc~Gi 150 (306)
....+.++|.+.+|+ -++-|..+ + -.+.+.. .++.|+. +..|||.-+
T Consensus 80 ~~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~-~~~~gi~~ianPNCst~ 137 (366)
T TIGR01745 80 IYPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITD-GLNNGIRTFVGGNCTVS 137 (366)
T ss_pred HHHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHh-HHhCCcCeEECcCHHHH
Confidence 999999999875555 33344222 1 0112111 1246764 788999533
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.026 Score=54.40 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=64.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCcee--cCe-eccCCH--HhhhhcCCCcEEEEecCc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTH--LDL-PVFNTV--KEARDATGAEATVIYVPP 97 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i--~Gi-p~y~sl--~el~~~~~iDlavi~vp~ 97 (306)
+.+++.+|+|+|++|..|+...+.|.+.++ ++......+..|+.+ .|. ..+.++ +++ . ++|++++++|.
T Consensus 3 ~~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~-~--~~D~vf~a~p~ 79 (344)
T PLN02383 3 LTENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSF-D--GVDIALFSAGG 79 (344)
T ss_pred ccCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHH-c--CCCEEEECCCc
Confidence 345678999999999999999999988554 444333343334433 121 122222 233 3 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.+.++.+.|++.| =.++-|.
T Consensus 80 ~~s~~~~~~~~~~g~~VI-DlS~~fR 104 (344)
T PLN02383 80 SISKKFGPIAVDKGAVVV-DNSSAFR 104 (344)
T ss_pred HHHHHHHHHHHhCCCEEE-ECCchhh
Confidence 999999999999998743 3676553
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.022 Score=54.56 Aligned_cols=90 Identities=16% Similarity=0.037 Sum_probs=61.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCcee--cCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGKTH--LDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~~i--~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+|+|+|+||..|+...+.|.+.++ ++.+....+..|+.+ .|.. .+.++++..- .++|+++.++|...+.+.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~-~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDF-SGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHH-cCCCEEEECCChHHHHHHH
Confidence 5799999999999999999988554 455555444434443 1211 2222322111 1499999999999999999
Q ss_pred HHHHHcCCCEEEEecCCC
Q psy8894 105 HEALDAEMPLIVCITEGI 122 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf 122 (306)
..+.++|++ |+=.++.|
T Consensus 81 ~~~~~~G~~-VIDlS~~~ 97 (334)
T PRK14874 81 PKAAAAGAV-VIDNSSAF 97 (334)
T ss_pred HHHHhCCCE-EEECCchh
Confidence 999999983 33345544
|
|
| >PRK14046 malate--CoA ligase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=54.25 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=79.8
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+|++++-.++++...++++...|....-++-+|..+ ..-.+.+.++-+.+||++++|++.+-+. +
T Consensus 255 l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a-~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii 333 (392)
T PRK14046 255 LDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGA-SPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVV 333 (392)
T ss_pred cCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCC-CHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHH
Confidence 579999999999999999999999998777777776652 3455788899999999999999764421 1
Q ss_pred ---CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q psy8894 236 ---GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300 (306)
Q Consensus 236 ---~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~ 300 (306)
.. .+|||++.-.|. ..+.....|+++|+. +...++|-++++...
T Consensus 334 ~a~~~~~~~kPvvv~l~G~--------------------~~e~~~~iL~~~Gip-vf~~~~~~~a~~~~v 382 (392)
T PRK14046 334 QAAREVGIDVPLVVRLAGT--------------------NVEEGRKILAESGLP-IITADTLAEAAEKAV 382 (392)
T ss_pred HHHHhcCCCCcEEEEcCCC--------------------CHHHHHHHHHHcCCC-eeecCCHHHHHHHHH
Confidence 12 578997654442 223346779999953 234445555555433
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=54.52 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=62.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCC-----------------------Cc--eecC--eecc--CC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKG-----------------------GK--THLD--LPVF--NT 78 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~-----------------------g~--~i~G--ip~y--~s 78 (306)
+|+|+|+ |+.|+.+.+.+.+. ++++++..+.... ++ .+.| ++++ ++
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 5899999 99999999988765 3888754332110 01 0123 3444 25
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++= +.++|+++.|++.....+.+..++++|.+.|++
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 777763 246999999999999999999999999998775
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.019 Score=55.06 Aligned_cols=91 Identities=15% Similarity=0.092 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeC-CCCCCceec---Ceecc-------C-----CHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVS-PGKGGKTHL---DLPVF-------N-----TVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~Vn-P~~~g~~i~---Gip~y-------~-----sl~el~~~~~iDlavi 93 (306)
.+|+|+|++|.+|+...+.+.++. +++++.+. ....|+.+. ....| . ++++.. ..++|++++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~DvVf~ 79 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVA-SKDVDIVFS 79 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHH-hccCCEEEE
Confidence 379999999999999999888864 78876643 222233322 11111 1 111111 125999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
++|...+.+..+++.+.|++. +..+.-|.
T Consensus 80 a~p~~~s~~~~~~~~~~G~~V-IDlsg~fR 108 (341)
T TIGR00978 80 ALPSEVAEEVEPKLAEAGKPV-FSNASNHR 108 (341)
T ss_pred eCCHHHHHHHHHHHHHCCCEE-EECChhhc
Confidence 999999999999999999985 44565553
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0079 Score=56.05 Aligned_cols=94 Identities=15% Similarity=0.049 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee--------------------------cCeeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH--------------------------LDLPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i--------------------------~Gip~y~sl~el~ 83 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...- .. ..+....++++..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 79 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV 79 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence 57999999 9999998889988999865 555542100 00 0133455676666
Q ss_pred hcCCCcEEEEecCchhHH--HHHHHHHHcCC-CEEE-EecCCCChhHHH
Q psy8894 84 DATGAEATVIYVPPPGAA--KAIHEALDAEM-PLIV-CITEGIPQLDMV 128 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~--~~~~e~~~~Gi-~~vv-i~t~Gf~e~~~~ 128 (306)
+. .|+++.++|.+... .++.++.+.-- ..++ +-++.++.+++.
T Consensus 80 ~~--aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~ 126 (288)
T PRK09260 80 AD--ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIA 126 (288)
T ss_pred cC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH
Confidence 54 99999999987642 44445443221 2223 335566655443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.048 Score=53.36 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=54.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+..+.+++++..+ .|++++++|- +.+..++
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--sDvV~l~lPlt~~T~~li 273 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLL-YHDRLKMDPELEKETGAKFEEDLDAMLPK--CDVVVINTPLTEKTRGMF 273 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCCEEE-EECCCCcchhhHhhcCceecCCHHHHHhh--CCEEEEeCCCCHHHHHHh
Confidence 4578999999 9999999999999999976 567653111 23466666789999876 9999999995 3444444
|
|
| >PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.028 Score=56.43 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCch---hH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPP---GA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~---~~ 100 (306)
.++++|+|+ |..|+...+.+++. |+++++.+|++.....+.|+|++.+.+++. .++.+|+ +++.|.. ..
T Consensus 146 ~rrvLIIGa-G~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~~~i~gvPVlg~~d~l~~~~~~~~v~v-IIAip~~~~~~r 223 (476)
T PRK15204 146 KKKTIILGS-GQNARGAYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHY-ILAYEYTELEKT 223 (476)
T ss_pred CCeEEEEEC-CHHHHHHHHHHHhCccCCcEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCcE-EEEeCcCcHHHH
Confidence 367999999 88888888888764 899998898764345688999998876552 2234675 7787743 34
Q ss_pred HHHHHHHHHcCCCEEEEecCCC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.+.+++|.+.|++.+.+ .+.+
T Consensus 224 ~~il~~l~~~gv~~V~v-IP~l 244 (476)
T PRK15204 224 HFWLRELSKHHCRSVTV-VPSF 244 (476)
T ss_pred HHHHHHHhhcCCeEEEE-eCCc
Confidence 57889998889875553 3443
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.032 Score=47.31 Aligned_cols=86 Identities=16% Similarity=0.121 Sum_probs=55.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCC--------cee-----------------cCe--ecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGG--------KTH-----------------LDL--PVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g--------~~i-----------------~Gi--p~y--~sl~ 80 (306)
.+|+|+|+ |++|+.+.+.+.+ .++++++..++.... +.. .|. +++ .+.+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChH
Confidence 37999999 9999999887775 488888766652100 111 121 111 2344
Q ss_pred hhh-hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EAR-DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~-~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++| .+.++|+++.|+..-...+.++.-++.|+|.|++
T Consensus 80 ~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred HCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence 444 2235788888877666677777777788888775
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.025 Score=56.20 Aligned_cols=90 Identities=13% Similarity=0.209 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCC--CCCceecCeeccCCHHhhh---hcCCCcEEEEecCc---h
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPG--KGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPP---P 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~--~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~---~ 98 (306)
.++++|+|+ |..++...+.+++ .||++++.++++ ..+..+.|+|++.+ +++. .++++|.++++.|. +
T Consensus 125 ~rrvlIiGa-g~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip~~~~~ 202 (456)
T TIGR03022 125 GRPAVIIGA-GQNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMPGTQAE 202 (456)
T ss_pred CceEEEEeC-CHHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecCCccHH
Confidence 467999999 7778877777764 489999888754 23456789999976 5553 34579999998883 4
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
...+.+++|.+.|+..+.+ -+.+
T Consensus 203 ~~~~ll~~l~~~~v~~V~~-vP~~ 225 (456)
T TIGR03022 203 DMARLVRKLGALHFRNVLI-VPSL 225 (456)
T ss_pred HHHHHHHHHHhCCCeEEEE-eCcc
Confidence 4567788888888843432 3544
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.052 Score=53.11 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+..+.+++++... .|++++++|-.. +..++
T Consensus 192 gktVGIvG~-G~IG~~vA~~l~~fG~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li 266 (385)
T PRK07574 192 GMTVGIVGA-GRIGLAVLRRLKPFDVKLH-YTDRHRLPEEVEQELGLTYHVSFDSLVSV--CDVVTIHCPLHPETEHLF 266 (385)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCCchhhHhhcCceecCCHHHHhhc--CCEEEEcCCCCHHHHHHh
Confidence 478999999 9999999999999999976 677653111 12366667899999876 999999999533 34444
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.031 Score=53.42 Aligned_cols=91 Identities=21% Similarity=0.251 Sum_probs=58.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHH-HHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQA-IEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l-~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~--~ 105 (306)
..++|+|+|+ |++|+...+.+ ..+|++++ ..||........++....+++++... .|++++++|.......+ +
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~~~~~~~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~ 220 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGSDVV-AYDPFPNAKAATYVDYKDTIEEAVEG--ADIVTLHMPATKYNHYLFNA 220 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCccHhHHhhccccCCHHHHHHh--CCEEEEeCCCCcchhhhcCH
Confidence 3578999999 99999998888 55688875 67876421111233444589998876 99999999976554444 2
Q ss_pred HHHH-cCCC-EEEEecCCCC
Q psy8894 106 EALD-AEMP-LIVCITEGIP 123 (306)
Q Consensus 106 e~~~-~Gi~-~vvi~t~Gf~ 123 (306)
+..+ ..-. .+++.+.|..
T Consensus 221 ~~l~~mk~gailIN~sRG~~ 240 (332)
T PRK08605 221 DLFKHFKKGAVFVNCARGSL 240 (332)
T ss_pred HHHhcCCCCcEEEECCCCcc
Confidence 2222 2222 3444566653
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.034 Score=54.27 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|||. |++|+...+.+..+|++++ ..||.. ....+..-|.+++++..+ .|++++.+|-.
T Consensus 115 ~gktvGIIG~-G~IG~~va~~l~a~G~~V~-~~Dp~~--~~~~~~~~~~~l~ell~~--aDiV~lh~Plt 178 (381)
T PRK00257 115 AERTYGVVGA-GHVGGRLVRVLRGLGWKVL-VCDPPR--QEAEGDGDFVSLERILEE--CDVISLHTPLT 178 (381)
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccCccccCHHHHHhh--CCEEEEeCcCC
Confidence 3578999999 9999999999999999986 668754 222232346789999876 99999999953
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.036 Score=50.93 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=57.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCC-ceecCee-ccCCHHhhhhc-------CC-CcEEEEecCc---
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGG-KTHLDLP-VFNTVKEARDA-------TG-AEATVIYVPP--- 97 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g-~~i~Gip-~y~sl~el~~~-------~~-iDlavi~vp~--- 97 (306)
+|+|+|++|..|+...+.|.+.|+++.+.+ +|.... ..+..++ -|.+.+.+.+. .+ +|.++++.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~ 80 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCC
Confidence 489999999999999999999999976554 343210 1111111 22333333221 24 7888877663
Q ss_pred --hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.....+++.|.+.|++.++..++
T Consensus 81 ~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 81 LAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEeec
Confidence 34556788899999999886553
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.031 Score=55.88 Aligned_cols=85 Identities=15% Similarity=0.075 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCch---hH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPP---GA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~---~~ 100 (306)
.+++.|+|+ |..|....+.+++. |+++++.+|.+.. .-.++|++.++++++ +++++|-++++.|.. ..
T Consensus 143 ~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~--~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~~~~~l 219 (463)
T PRK10124 143 KRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKP--GGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARV 219 (463)
T ss_pred CCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCcc--ccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCcchHHH
Confidence 467999999 88888888887663 8899988876531 112345588766654 346799999998754 34
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy8894 101 AKAIHEALDAEMPLIVC 117 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi 117 (306)
.+++++|.+.+++..++
T Consensus 220 ~ell~~~~~~~v~V~iv 236 (463)
T PRK10124 220 KKLVRQLADTTCSVLLI 236 (463)
T ss_pred HHHHHHHHHcCCeEEEe
Confidence 56788888889986554
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.1 Score=50.28 Aligned_cols=93 Identities=6% Similarity=0.000 Sum_probs=59.5
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---cCeecc-CC------HHhhhhcCCCcEEEEe
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---LDLPVF-NT------VKEARDATGAEATVIY 94 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---~Gip~y-~s------l~el~~~~~iDlavi~ 94 (306)
.++++.++|.|.|++|-.|+...+.|.+.|+++++...... .... .+...+ .+ +.++.. ++|.++-+
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~Vih~ 92 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKN-EHMSEDMFCHEFHLVDLRVMENCLKVTK--GVDHVFNL 92 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccc-cccccccccceEEECCCCCHHHHHHHHh--CCCEEEEc
Confidence 35667899999999999999999999999999875432211 0000 011111 12 233333 38988876
Q ss_pred cCc-------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPP-------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~-------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
... .....+++.|.+.+++.++.+++
T Consensus 93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS 137 (370)
T PLN02695 93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASS 137 (370)
T ss_pred ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCc
Confidence 521 12345778788889988876665
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.039 Score=51.16 Aligned_cols=90 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCee-----------ccCCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLP-----------VFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip-----------~y~sl~el~~~~~iDlavi~vp 96 (306)
++|+|+|+ |.+|......|.+.|.++. .++++... +. ..|+. ...+.+++ + ++|+++++++
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~~d~vila~k 75 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVT-LVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--PQDLVILAVK 75 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--CCCEEEEecc
Confidence 36999999 9999998888888898865 44432100 11 11322 23345554 3 4999999999
Q ss_pred chhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 97 PPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 97 ~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+..+.++++++... +- ..++.++.|+...
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~ 106 (304)
T PRK06522 76 AYQLPAALPSLAPLLGPDTPVLFLQNGVGHL 106 (304)
T ss_pred cccHHHHHHHHhhhcCCCCEEEEecCCCCcH
Confidence 99999998888763 33 2566678898633
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.0082 Score=52.11 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
...++|+|+|. |+.|+.+.+.++.+|++++ ..||.....+ ..++ -|.+++|+... .|++++++|.
T Consensus 34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~~~~-~~~~l~ell~~--aDiv~~~~pl 101 (178)
T PF02826_consen 34 LRGKTVGIIGY-GRIGRAVARRLKAFGMRVI-GYDRSPKPEEGADEFGV-EYVSLDELLAQ--ADIVSLHLPL 101 (178)
T ss_dssp STTSEEEEEST-SHHHHHHHHHHHHTT-EEE-EEESSCHHHHHHHHTTE-EESSHHHHHHH---SEEEE-SSS
T ss_pred cCCCEEEEEEE-cCCcCeEeeeeecCCceeE-EecccCChhhhcccccc-eeeehhhhcch--hhhhhhhhcc
Confidence 34689999999 9999999999999999986 7787752111 2244 45689999987 9999999984
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.035 Score=56.30 Aligned_cols=88 Identities=11% Similarity=0.203 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC--CCCceecCeeccCCH--HhhhhcCCCcEEEEecCc---hhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG--KGGKTHLDLPVFNTV--KEARDATGAEATVIYVPP---PGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~--~~g~~i~Gip~y~sl--~el~~~~~iDlavi~vp~---~~~ 100 (306)
+.+++.|+|| |..|....+.++.. .|..++.+|+. ..|.++.|+|+|.++ .++.++..+|.++++.|. +..
T Consensus 115 ~~~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~~ 193 (588)
T COG1086 115 NRIRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEER 193 (588)
T ss_pred CCCceEEEcC-chHHHHHHHHHHhCCCcceEEEECCChhhcCCEEeceeeechhHHHHHHHHcCCceEEEecCCCCHHHH
Confidence 3578999999 99999888888875 68888888864 456789999999875 444556678988888775 455
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy8894 101 AKAIHEALDAEMPLIVC 117 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi 117 (306)
.+.++.|.+.|++.-.+
T Consensus 194 ~~i~~~l~~~~~~v~~l 210 (588)
T COG1086 194 RRILLRLARTGIAVRIL 210 (588)
T ss_pred HHHHHHHHhcCCcEEec
Confidence 66888898888775443
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.023 Score=55.08 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=51.8
Q ss_pred EEEEcCCCCCChHHHHHHHHc-CC-eE-EEeeCCCC--------CCceec----CeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEY-GT-KV-VGGVSPGK--------GGKTHL----DLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~-g~-~v-v~~VnP~~--------~g~~i~----Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
|.|+|+ |.+|+.+.+.|.+. .+ ++ ++.-|+.. .+..+. ++.-..+|.++..+ .|++|-|+|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEECCcc
Confidence 689999 99999999998887 45 43 33333322 001111 11111235666655 8999999999
Q ss_pred hhHHHHHHHHHHcCCCEEE
Q psy8894 98 PGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vv 116 (306)
.....+++.|++.|++.+=
T Consensus 78 ~~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVD 96 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEE
T ss_pred chhHHHHHHHHHhCCCeec
Confidence 9999999999999999754
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.022 Score=47.90 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCC--CCceecCeeccCCHHhhhh---cCCCcEEEEecCch--
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGK--GGKTHLDLPVFNTVKEARD---ATGAEATVIYVPPP-- 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~~---~~~iDlavi~vp~~-- 98 (306)
+.++..++|. +..+....+.+++ .|+++++.++++. .++++.|+|+..+++++++ ++++|-++++.|.+
T Consensus 76 ~~~~~~~v~~-~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~~~~~~~lg~~~~l~~~~~~~~id~v~ial~~~~~ 154 (175)
T PF13727_consen 76 SGRNVLIVGA-GGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPEIDGVPVLGDLDDLPELVREHDIDEVIIALPWSEE 154 (175)
T ss_dssp --EEEEEE---SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-EETTEEEE--GGGHHHHHHHHT--EEEE--TTS-H
T ss_pred hccceEEEEE-echHHHHHHHHHhhhhcCceEEEEEeCchhhccCcccCceeEcCHHHHHHHHHhCCCCEEEEEcCccCH
Confidence 3455567775 5556666676666 4999988887654 2356789999988777765 45799999997764
Q ss_pred -hHHHHHHHHHHcCCCEEE
Q psy8894 99 -GAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 99 -~~~~~~~e~~~~Gi~~vv 116 (306)
...+++++|-+.|++.-+
T Consensus 155 ~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 155 EQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp HHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 456678888888887543
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.018 Score=55.00 Aligned_cols=71 Identities=21% Similarity=0.274 Sum_probs=54.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--ceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--KTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
-+++.|+|+ |+.|+.+.+.++.+|++++ ..||.... ....+..-..+|+++..+ .|++++.+|- +.+..++
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm~v~-~~d~~~~~~~~~~~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i 215 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGMKVI-GYDPYSPRERAGVDGVVGVDSLDELLAE--ADILTLHLPLTPETRGLI 215 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EECCCCchhhhccccceecccHHHHHhh--CCEEEEcCCCCcchhccc
Confidence 589999999 9999999999999999987 77883211 123445555789999987 9999999886 4444444
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.021 Score=55.64 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|||. |++|+...+.+..+|++++ ..||.. .+......|.+++++..+ .|++++.+|-.
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~~V~-~~dp~~--~~~~~~~~~~~L~ell~~--sDiI~lh~PLt 178 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGIKTL-LCDPPR--ADRGDEGDFRSLDELVQE--ADILTFHTPLF 178 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCcc--cccccccccCCHHHHHhh--CCEEEEeCCCC
Confidence 4689999999 9999999999999999987 678754 221111246789999876 89999998843
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.081 Score=50.25 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee---ccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP---VFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip---~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
+-++|+|+|. |++|+...+.++.+|++++ .+++.. +...+.. -+.+++++..+ .|++++++|... +..++
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~-~~~~~~--~~~~~~~~~~~~~~l~e~l~~--aDvvv~~lPlt~~T~~li 208 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLR-CWSRSR--KSWPGVQSFAGREELSAFLSQ--TRVLINLLPNTPETVGII 208 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCC--CCCCCceeecccccHHHHHhc--CCEEEECCCCCHHHHHHh
Confidence 3579999999 9999999999999999976 677653 2222222 23578888876 999999999643 34444
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.021 Score=52.98 Aligned_cols=92 Identities=13% Similarity=0.088 Sum_probs=58.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---------------e------------cCeeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---------------H------------LDLPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---------------i------------~Gip~y~sl~el~ 83 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...-+ . .++....+++++
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~- 80 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL- 80 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 57999999 9999998888988899865 5554421010 0 123344556554
Q ss_pred hcCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEE-EecCCCChhHH
Q psy8894 84 DATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIV-CITEGIPQLDM 127 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vv-i~t~Gf~e~~~ 127 (306)
+ +.|++++++|++.. .++++++.+. .-..++ .-|+|++.+++
T Consensus 81 ~--~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~l 126 (282)
T PRK05808 81 K--DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITEL 126 (282)
T ss_pred c--cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 3 38999999997555 6777776653 223344 33556655443
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.026 Score=54.18 Aligned_cols=87 Identities=15% Similarity=0.062 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEE---eeCCCCCCcee--cCee-ccCCH--HhhhhcCCCcEEEEecCchhHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVG---GVSPGKGGKTH--LDLP-VFNTV--KEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~---~VnP~~~g~~i--~Gip-~y~sl--~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+|+|+||||..|+...+.|.+.++..+. ....+..|+.+ .|.. .+.++ .++ . ++|++++++|...+.+.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~-~--~~D~v~~a~g~~~s~~~ 77 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESF-E--GIDIALFSAGGSVSKEF 77 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHh-c--CCCEEEECCCHHHHHHH
Confidence 5899999999999999999886665322 22333334433 2221 22222 233 2 49999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCC
Q psy8894 104 IHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf 122 (306)
+.++.++|++ ++=.++-|
T Consensus 78 a~~~~~~G~~-VID~ss~~ 95 (339)
T TIGR01296 78 APKAAKCGAI-VIDNTSAF 95 (339)
T ss_pred HHHHHHCCCE-EEECCHHH
Confidence 9999999985 33245444
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.067 Score=60.24 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=73.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhcCCCcEEEEecC-chhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDATGAEATVIYVP-PPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~~~iDlavi~vp-~~~~~~~~ 104 (306)
..++|++||. |+||....++|.+.|+++. +.|+.... + .-.|.....+..++.+. .|++++++| ++.+.+++
T Consensus 323 ~~~~IGfIGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~--aDvVi~~V~~~~~v~~Vl 398 (1378)
T PLN02858 323 PVKRIGFIGL-GAMGFGMASHLLKSNFSVC-GYDVYKPTLVRFENAGGLAGNSPAEVAKD--VDVLVIMVANEVQAENVL 398 (1378)
T ss_pred CCCeEEEECc-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEecCChHHHHHHH
Confidence 3578999999 9999999999999999864 55654310 1 11355567788888876 999999999 56666665
Q ss_pred H---HHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHh--cCCeEE-ccCCCcee
Q psy8894 105 H---EALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQ--SKSRLI-GPNCPGII 151 (306)
Q Consensus 105 ~---e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~--~gi~ii-GPNc~Gi~ 151 (306)
. .+++. .. +.++.+|+.. ....+++.+ .+++ .|++++ .|=+-|..
T Consensus 399 ~g~~g~~~~l~~g~ivVd~STvs-P~~~~~la~-~l~~~g~g~~~lDAPVsGg~~ 451 (1378)
T PLN02858 399 FGDLGAVSALPAGASIVLSSTVS-PGFVIQLER-RLENEGRDIKLVDAPVSGGVK 451 (1378)
T ss_pred hchhhHHhcCCCCCEEEECCCCC-HHHHHHHHH-HHHhhCCCcEEEEccCCCChh
Confidence 2 23332 12 3344455544 333344433 3455 777665 56544433
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.054 Score=57.00 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=68.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCc---eecCee--ccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGK---THLDLP--VFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~---~i~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |++|....+.+.+.|+ ..|..+|++.... ...|.. ...++.+..+. .|++++++|+....+++
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~--aDvVilavp~~~~~~vl 80 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSG--ADVIVLAVPVLAMEKVL 80 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcC--CCEEEECCCHHHHHHHH
Confidence 67999998 9999999999998885 2244677764111 112432 33456666654 89999999999999998
Q ss_pred HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+++... .-+.++.-.++....-.+++. +......+|++
T Consensus 81 ~~l~~~~~~~~ii~d~~svk~~~~~~l~-~~~~~~~~r~~ 119 (735)
T PRK14806 81 ADLKPLLSEHAIVTDVGSTKGNVVDAAR-AVFGELPAGFV 119 (735)
T ss_pred HHHHHhcCCCcEEEEcCCCchHHHHHHH-HhccccCCeEE
Confidence 887753 233344434555433333332 22222345655
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.084 Score=50.55 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|.+ +.+++++..+ .|++++++|... +..++
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~~~-~~~l~ell~~--aDiV~l~lP~t~~T~~~i 222 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGMRIL-YYSRTRKPEAEKELGAE-YRPLEELLRE--SDFVSLHVPLTKETYHMI 222 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHHHcCCE-ecCHHHHHhh--CCEEEEeCCCChHHhhcc
Confidence 4589999999 9999999999999999976 677753111 122433 4579998876 899999999643 34444
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.084 Score=50.52 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+-++|+|+|. |++|+...+.+..+|++++ ..|+... ..........+++++.+. .|++++++|...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDiVil~lP~t~ 210 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGATIT-AYDAYPN-KDLDFLTYKDSVKEAIKD--ADIISLHVPANK 210 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCChh-HhhhhhhccCCHHHHHhc--CCEEEEeCCCcH
Confidence 3468999999 9999999999999999976 5666541 111122333478998876 999999999754
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.045 Score=55.19 Aligned_cols=93 Identities=23% Similarity=0.179 Sum_probs=59.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e---------------------cC-eeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H---------------------LD-LPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i---------------------~G-ip~y~sl~el~~~~~ 87 (306)
++|+|||+ |.||......+.+.|+++. ..|+.....+ + .| +....+++++.+.
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~-- 80 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG-- 80 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC--
Confidence 57999999 9999999999999999865 5666531100 0 12 4556678777655
Q ss_pred CcEEEEecCchhH--HHHHHHHHHc-CCC-EEEEecCCCChhHH
Q psy8894 88 AEATVIYVPPPGA--AKAIHEALDA-EMP-LIVCITEGIPQLDM 127 (306)
Q Consensus 88 iDlavi~vp~~~~--~~~~~e~~~~-Gi~-~vvi~t~Gf~e~~~ 127 (306)
.|+++.++|.... ..++.++.+. .-+ .+..-|+|++.+++
T Consensus 81 aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l 124 (495)
T PRK07531 81 ADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDL 124 (495)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHH
Confidence 9999999998852 2233443222 112 23335567765543
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.075 Score=50.48 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~--~ 105 (306)
+-++++|+|. |+.|+.+.+.++.+|++++ .+++.. ...... -|.+++++..+ .|++++++|- +.+..++ +
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~fg~~V~-~~~~~~--~~~~~~-~~~~l~ell~~--sDiv~l~~Plt~~T~~li~~~ 218 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQALGMKVL-YAEHKG--ASVCRE-GYTPFEEVLKQ--ADIVTLHCPLTETTQNLINAE 218 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCc--cccccc-ccCCHHHHHHh--CCEEEEcCCCChHHhcccCHH
Confidence 3579999999 9999999999999999987 467653 111111 26789999876 9999999984 3333433 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
+....+-.+++ +..+
T Consensus 219 ~l~~mk~ga~l-IN~a 233 (314)
T PRK06932 219 TLALMKPTAFL-INTG 233 (314)
T ss_pred HHHhCCCCeEE-EECC
Confidence 33334444443 3443
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.1 Score=46.02 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCceecCe-----eccC--CHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTHLDL-----PVFN--TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i~Gi-----p~y~--sl~el~~~~~iDlavi~vp~~ 98 (306)
++|||+||||+.|+...+...+.|.++.+.| ||... ....++ .+|. ++++... +.|++|......
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~-~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKL-AARQGVTILQKDIFDLTSLASDLA--GHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhc-cccccceeecccccChhhhHhhhc--CCceEEEeccCC
Confidence 4799999999999999999999999988775 44431 111333 3343 2223333 489999865443
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.027 Score=52.53 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--e------------cC-------------eeccCCHHh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--H------------LD-------------LPVFNTVKE 81 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i------------~G-------------ip~y~sl~e 81 (306)
+.++|+|+|+ |.||......+.+.|++++ .+|++....+ . .| +....++++
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~ 80 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED 80 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH
Confidence 3478999999 9999999889998999865 4454320000 0 12 234455655
Q ss_pred hhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChh
Q psy8894 82 ARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQL 125 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~ 125 (306)
+ + +.|+++.++|.+. -..+++++... .-..+++ -|++++..
T Consensus 81 ~-~--~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s 125 (292)
T PRK07530 81 L-A--DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT 125 (292)
T ss_pred h-c--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH
Confidence 4 3 3899999998753 23445554433 2223443 46677644
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.024 Score=47.23 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=63.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCe----eccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDL----PVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gi----p~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.++|+|+|+ |.+|+...+.+.+.|...+..+|++... ++ ..+. ..+.+.+++.++ +|++|.++|+...
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Dvvi~~~~~~~~ 94 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAE--ADLIINTTPVGMK 94 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcccc--CCEEEeCcCCCCC
Confidence 3678999999 9999999999988864434466665311 11 1122 134456665544 9999999999875
Q ss_pred --H--HHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 101 --A--KAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 101 --~--~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
. ...+.+++.|.. ++-.++- ++.. ++. +.+++.|++++.
T Consensus 95 ~~~~~~~~~~~~~~~~~-v~D~~~~-~~~~--~l~-~~~~~~g~~~v~ 137 (155)
T cd01065 95 PGDELPLPPSLLKPGGV-VYDVVYN-PLET--PLL-KEARALGAKTID 137 (155)
T ss_pred CCCCCCCCHHHcCCCCE-EEEcCcC-CCCC--HHH-HHHHHCCCceeC
Confidence 1 122334444432 3333332 2221 333 356788887663
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.023 Score=54.36 Aligned_cols=121 Identities=10% Similarity=0.141 Sum_probs=81.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+..+..+.+|+|+|. |+||+...+.+.+.|..+++---+.+.. .+-.|..-|..+.|+.++ ++|++++||.......
T Consensus 46 ~~~~k~tl~IaIIGf-GnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcer-hpDvvLlctsilsiek 123 (480)
T KOG2380|consen 46 IEQWKATLVIAIIGF-GNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCER-HPDVVLLCTSILSIEK 123 (480)
T ss_pred hhhcccceEEEEEec-CcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhc-CCCEEEEEehhhhHHH
Confidence 346777899999999 9999999999999999876433333310 123477888999998875 7999999999988888
Q ss_pred HHHHHHH--cCCCEEEEecCCCChhHHHHHHHHHHHhcCC----eEEccC
Q psy8894 103 AIHEALD--AEMPLIVCITEGIPQLDMVKVKHRLIRQSKS----RLIGPN 146 (306)
Q Consensus 103 ~~~e~~~--~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi----~iiGPN 146 (306)
+++-..= ..+..++.-..-..|.+.+..++-+-++-++ .+-||.
T Consensus 124 ilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk 173 (480)
T KOG2380|consen 124 ILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK 173 (480)
T ss_pred HHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC
Confidence 8876542 3344555433333344444333333444443 345776
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.088 Score=49.91 Aligned_cols=86 Identities=22% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~--~ 105 (306)
.-++++|+|. |+.|+.+.+.++.+|++++ ..||... ....+++ |.+++++..+ .|++++.+|-. .+..++ +
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~fgm~V~-~~d~~~~-~~~~~~~-~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~ 217 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAFGAKVV-YYSTSGK-NKNEEYE-RVSLEELLKT--SDIISIHAPLNEKTKNLIAYK 217 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhcCCEEE-EECCCcc-ccccCce-eecHHHHhhc--CCEEEEeCCCCchhhcccCHH
Confidence 3589999999 9999999999999999987 6787531 2223443 5689999886 89999999853 333333 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
+....+-.+++ +..+
T Consensus 218 ~~~~Mk~~a~l-IN~a 232 (311)
T PRK08410 218 ELKLLKDGAIL-INVG 232 (311)
T ss_pred HHHhCCCCeEE-EECC
Confidence 33344544444 3443
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.065 Score=54.48 Aligned_cols=71 Identities=20% Similarity=0.312 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||....+ ...|++.+.+++++... .|++++++|.. .+..++
T Consensus 138 gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~lPlt~~T~~li 211 (525)
T TIGR01327 138 GKTLGVIGL-GRIGSIVAKRAKAFGMKVL-AYDPYISPERAEQLGVELVDDLDELLAR--ADFITVHTPLTPETRGLI 211 (525)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEcCCHHHHHhh--CCEEEEccCCChhhccCc
Confidence 478999999 9999999999999999976 678742111 23466656689999876 99999999964 344444
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.094 Score=49.08 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=59.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeE-EEeeCCCCCCc---eecCee-cc-CCH-HhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKV-VGGVSPGKGGK---THLDLP-VF-NTV-KEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~v-v~~VnP~~~g~---~i~Gip-~y-~sl-~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++|+|+|. |.+|+...+.+++.|+.+ +.+.++..... ...|+. .+ .+. .+... ..|++|++||-..+.+
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~--~aD~VivavPi~~~~~ 79 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAA--EADLVIVAVPIEATEE 79 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcc--cCCEEEEeccHHHHHH
Confidence 468999998 999999999999999985 66788765211 112321 22 222 22222 3799999999999999
Q ss_pred HHHHHHH-cCCCEEEE
Q psy8894 103 AIHEALD-AEMPLIVC 117 (306)
Q Consensus 103 ~~~e~~~-~Gi~~vvi 117 (306)
++++... .....+|.
T Consensus 80 ~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 80 VLKELAPHLKKGAIVT 95 (279)
T ss_pred HHHHhcccCCCCCEEE
Confidence 9999985 45555443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.16 Score=50.06 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccC-CHHhhhh-------------cCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFN-TVKEARD-------------ATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~-sl~el~~-------------~~~iDlav 92 (306)
.++|+|+|. |.+|......|.+.|++++ ++|.+...- . ....|++. .++++.. ..+.|+++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~-~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvi 80 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQKQVI-GVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFL 80 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCCEEE-EEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEE
Confidence 368999999 9999988899999999976 555443101 1 12344443 3444421 01489999
Q ss_pred EecCc----------hhHHHHHHHHHHc-CCCEEEEecCCCC
Q psy8894 93 IYVPP----------PGAAKAIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 93 i~vp~----------~~~~~~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
+|+|. +.+.++++..... .-..+|+..+..+
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~ 122 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP 122 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 99998 4666666666553 2233444444443
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.11 Score=50.17 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=60.4
Q ss_pred CcEEEEE----cCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----------e--ecCeec-cCCHHhh---hhcCCC
Q psy8894 30 KSKVICQ----GFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----------T--HLDLPV-FNTVKEA---RDATGA 88 (306)
Q Consensus 30 ~~~VaVv----Gasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----------~--i~Gip~-y~sl~el---~~~~~i 88 (306)
+++|+|+ |++|..|+...+.|.+.|+++++......... + ..|+.. ..++.++ ....++
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~ 131 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGF 131 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCc
Confidence 4689999 99999999999999999999875443221000 0 123332 2355543 222358
Q ss_pred cEEEEecCc--hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 89 EATVIYVPP--PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 89 Dlavi~vp~--~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|+++.+... ..+..+++.|.+.|++.++.+++
T Consensus 132 d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 132 DVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 988876532 34667888888899988776554
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.14 Score=47.57 Aligned_cols=90 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-C------CCceec---C-----eeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-K------GGKTHL---D-----LPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-~------~g~~i~---G-----ip~y~sl~el~~~~~iDlavi~v 95 (306)
++|+|+|+ |.+|......|.+.|.++. .+++. . .|-.+. + .+...+.+++.+ ++|++++++
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGRDVT-FLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCceE-EEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccC--CCCEEEEEe
Confidence 37999999 9999998888888888754 33331 1 011111 0 112334555544 389999999
Q ss_pred CchhHHHHHHHHHHc-CC-CEEEEecCCCCh
Q psy8894 96 PPPGAAKAIHEALDA-EM-PLIVCITEGIPQ 124 (306)
Q Consensus 96 p~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e 124 (306)
|+....++++++... .- ..++.++.|+..
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~ 107 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQ 107 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCCCCh
Confidence 999999999888763 22 335556778853
|
|
| >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.066 Score=53.10 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=60.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH---cCCeEEEeeCCCCCCceecCeeccCCHHhhh---hcCCCcEEEEecCchhHH--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE---YGTKVVGGVSPGKGGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPPGAA-- 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~---~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~~~~-- 101 (306)
.+++.|+|+ |..+....+.+.+ .|+++++.++.......+.|+|++.++++++ +++++|-++++.|.....
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~~~~~~~ 202 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLP 202 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECchhhcchH
Confidence 467999999 7777666444433 3899998884322123678899998766654 456799999999865432
Q ss_pred -HHHHHHHHcCCCEEE
Q psy8894 102 -KAIHEALDAEMPLIV 116 (306)
Q Consensus 102 -~~~~e~~~~Gi~~vv 116 (306)
+.+++|.+.|++..+
T Consensus 203 ~~~l~~~~~~gv~V~i 218 (442)
T TIGR03013 203 VDELLECKLSGIEVVD 218 (442)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 357888888888544
|
Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre |
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.044 Score=46.66 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecCee--cc--CCHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK--------------------------THLDLP--VF--NTVK 80 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~--------------------------~i~Gip--~y--~sl~ 80 (306)
||+|-|+ |+.||.+.+.+... ++++++.-+|...-+ .+.|.+ ++ .+.+
T Consensus 2 kVgINGf-GRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp~ 80 (151)
T PF00044_consen 2 KVGINGF-GRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDPE 80 (151)
T ss_dssp EEEEEST-SHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSGG
T ss_pred EEEEECC-CcccHHHHHhhcccceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhhhhc
Confidence 7999999 99999999887754 888887655652100 123432 22 2455
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++|= +.++|+++.|++.-...+..+.-++.|+|.|++
T Consensus 81 ~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkVii 118 (151)
T PF00044_consen 81 EIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVII 118 (151)
T ss_dssp GSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEE
T ss_pred ccccccccccEEEeccccceecccccccccccccceee
Confidence 5552 246999999999999999999999999999886
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.17 Score=49.80 Aligned_cols=71 Identities=17% Similarity=0.138 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.-++++|+|. |+.|+...+.+..+|++++ ..||... ....+..-+.+++++... .|++++.+|-. .+..++
T Consensus 150 ~gktvGIiG~-G~IG~~vA~~~~~fGm~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--sDiVslh~Plt~~T~~li 221 (409)
T PRK11790 150 RGKTLGIVGY-GHIGTQLSVLAESLGMRVY-FYDIEDK-LPLGNARQVGSLEELLAQ--SDVVSLHVPETPSTKNMI 221 (409)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCcc-cccCCceecCCHHHHHhh--CCEEEEcCCCChHHhhcc
Confidence 3589999999 9999999999999999986 6777531 122234434589999987 99999999963 344444
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.13 Score=45.55 Aligned_cols=114 Identities=14% Similarity=0.098 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~ 103 (306)
+.++|+|+|. |++|+...+.|.+.|.+++ ..|.+... . +..|....++ +++... ++|+.+-+.... ...+.
T Consensus 27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv-v~D~~~~~~~~~~~~~g~~~v~~-~~l~~~-~~Dv~vp~A~~~~I~~~~ 102 (200)
T cd01075 27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLI-VADINEEAVARAAELFGATVVAP-EEIYSV-DADVFAPCALGGVINDDT 102 (200)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHHHcCCEEEcc-hhhccc-cCCEEEecccccccCHHH
Confidence 3478999999 9999999999999999987 66654310 1 1124444433 455442 489888554432 22233
Q ss_pred HHHHHHcCCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEE---ccCCCceecC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLI---GPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~ii---GPNc~Gi~~~ 153 (306)
+.+.+.+.|+-.+.+... .+.. ++.++.|+.++ +-|+-|++..
T Consensus 103 ---~~~l~~~~v~~~AN~~~~~~~~~----~~L~~~Gi~~~Pd~~~NaGGv~~~ 149 (200)
T cd01075 103 ---IPQLKAKAIAGAANNQLADPRHG----QMLHERGILYAPDYVVNAGGLINV 149 (200)
T ss_pred ---HHHcCCCEEEECCcCccCCHhHH----HHHHHCCCEEeCceeeeCcCceee
Confidence 334567866644434322 2222 34578898875 3467777764
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.075 Score=49.59 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=71.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCch---
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~--- 98 (306)
..|++|.|+| .+.|......+... +|++.+..--.-.. . .-.|+|.|.+.+++|+. ||++-+.+...
T Consensus 2 ~~pksVvV~G--trFGq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVply~~~eelpd~--idiACVvVrsai~G 77 (361)
T COG4693 2 SDPKSVVVCG--TRFGQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVPLYCEVEELPDD--IDIACVVVRSAIVG 77 (361)
T ss_pred CCCceEEEec--chHHHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCccccCHhhCCCC--CCeEEEEEeeeeec
Confidence 4688999999 46777766655553 88877554432100 1 24699999999999987 99988766543
Q ss_pred -hHHHHHHHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 -GAAKAIHEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 -~~~~~~~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~ii 143 (306)
.-.++.+.+++.||+.+ ++.- -.+|..+++ ++|++.|-+..
T Consensus 78 g~Gs~larall~RGi~Vl---qEHPl~p~di~~l~-rlA~rqG~~y~ 120 (361)
T COG4693 78 GQGSALARALLARGIHVL---QEHPLHPRDIQDLL-RLAERQGRRYL 120 (361)
T ss_pred CCcHHHHHHHHHcccHHH---HhCCCCHHHHHHHH-HHHHHhCcEEE
Confidence 33567888888898842 3432 233444444 47777776554
|
|
| >PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=50.26 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=81.5
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEee--CC---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEI--GG--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~--~~--------- 235 (306)
..|+|+++.--++++.+.++.....|--..-|.-+|+.+ ..-.....++-+..||+.|+|++=+=+ .+
T Consensus 290 ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a-~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii 368 (422)
T PLN00124 290 LDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNA-SEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIV 368 (422)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCC-CHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHH
Confidence 579999999999999999999999999999999999974 445677888889999999999883222 12
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNE 295 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~ 295 (306)
...++|||+=-.|+... .=...|++.| +..++|++|-...
T Consensus 369 ~a~~~~~~~~pivvRl~Gtn~~--------------------~g~~~l~~~~~~~~~~~~l~~A~~~ 415 (422)
T PLN00124 369 NAAKQVGLKVPLVVRLEGTNVD--------------------QGKRILKESGMTLITAEDLDDAAEK 415 (422)
T ss_pred HHHHhcCCCCcEEEEcCCCCHH--------------------HHHHHHHhCCCCeEEcCCHHHHHHH
Confidence 13578999865665532 2268899999 5555555554443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.081 Score=49.83 Aligned_cols=114 Identities=17% Similarity=0.262 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeec--cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPV--FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..+++.|+|+ |..|+...+.++..|.++. .+|++.... +..|.+. |.++.+...+ .|++|.++|+....+-
T Consensus 151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~-v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~--aDiVI~t~p~~~i~~~ 226 (296)
T PRK08306 151 HGSNVLVLGF-GRTGMTLARTLKALGANVT-VGARKSAHLARITEMGLSPFHLSELAEEVGK--IDIIFNTIPALVLTKE 226 (296)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCeeecHHHHHHHhCC--CCEEEECCChhhhhHH
Confidence 4689999999 9999999999999998754 556553101 1234332 2345555444 8999999987543322
Q ss_pred HHHHHHcCCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEc-cCCCceecC
Q psy8894 104 IHEALDAEMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIG-PNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiG-PNc~Gi~~~ 153 (306)
.-+..+. ..+++ ++......+. +.++++|+++++ ||-.|.+-|
T Consensus 227 ~l~~~~~--g~vIIDla~~pggtd~-----~~a~~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 227 VLSKMPP--EALIIDLASKPGGTDF-----EYAEKRGIKALLAPGLPGKVAP 271 (296)
T ss_pred HHHcCCC--CcEEEEEccCCCCcCe-----eehhhCCeEEEEECCCCccCCH
Confidence 2122233 33332 3432212221 246888998887 444455544
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.24 Score=44.74 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=53.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCcee---cCeecc-CCH----Hhhhhc--CCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTH---LDLPVF-NTV----KEARDA--TGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i---~Gip~y-~sl----~el~~~--~~iDlavi~vp~~ 98 (306)
+++|.|+|++|..|+...+.|.+.|+++++.+ ++....... .++.++ -++ +++.+. .++|+++.+.+..
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~ 96 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGFR 96 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCC
Confidence 57899999999999999999999999976543 222100000 112212 122 122111 1478877665431
Q ss_pred --------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.+.+.|++.++.+++
T Consensus 97 ~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 97 RSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred cCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2355666666677777666554
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.16 Score=57.21 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=70.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~- 104 (306)
..++|++||. |+||....++|.+.|+++. ..|.+.... .-.|.....|..|+.+. .|++++++|...+.+.+
T Consensus 3 ~~~~IGfIGL-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~--advVi~~l~~~~~v~~V~ 78 (1378)
T PLN02858 3 SAGVVGFVGL-DSLSFELASSLLRSGFKVQ-AFEISTPLMEKFCELGGHRCDSPAEAAKD--AAALVVVLSHPDQVDDVF 78 (1378)
T ss_pred CCCeEEEEch-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEEcCChHHHHHHH
Confidence 4578999999 9999999999999999964 445543111 12477888999999986 99999999986654433
Q ss_pred ---HHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcC--CeEE
Q psy8894 105 ---HEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSK--SRLI 143 (306)
Q Consensus 105 ---~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~g--i~ii 143 (306)
+.+++. .-..+|+ +|+-- .+..+++.+ .+++.| ++++
T Consensus 79 ~g~~g~~~~l~~g~iivd~STi~-p~~~~~la~-~l~~~g~~~~~l 122 (1378)
T PLN02858 79 FGDEGAAKGLQKGAVILIRSTIL-PLQLQKLEK-KLTERKEQIFLV 122 (1378)
T ss_pred hchhhHHhcCCCcCEEEECCCCC-HHHHHHHHH-HHHhcCCceEEE
Confidence 223332 1223444 44443 334444433 345566 6544
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.14 Score=49.18 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc---e---------ecC--eecc--CC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK---T---------HLD--LPVF--NT 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~---~---------i~G--ip~y--~s 78 (306)
+.+|+|.|+ |+||+.+.+.+.+. +++++++.+|... |. + +.| ++++ .+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~ 80 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKA 80 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCC
Confidence 368999999 99999999987765 7888877665321 10 0 123 2333 25
Q ss_pred HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++=. ++|+++.|+......+.+...++.|.+.|++
T Consensus 81 ~~~~~w~-gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 81 IADTDWS-GCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred hhhCCcc-CCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 6777654 7999999999999999999999999998776
|
|
| >COG1810 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.28 Score=44.06 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCCCCCceecCeeccC-CHHhhhhc-CCCcEEEEe-cCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPGKGGKTHLDLPVFN-TVKEARDA-TGAEATVIY-VPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~~~g~~i~Gip~y~-sl~el~~~-~~iDlavi~-vp~~~~~~~~~ 105 (306)
++|+|+.. |.-|+-.++++...+|. +++...+. +++ +-|- .-+++..+ .+.|++|-. .+|+....+.+
T Consensus 2 mki~vlt~-g~yG~R~~~nl~~~~f~~~~v~v~~~P---e~~---~~fie~P~~~Lp~~~e~Di~va~~lHPDl~~~L~e 74 (224)
T COG1810 2 MKILVLTD-GEYGKRAVNNLACKGFKNQFVAVKEYP---EEL---PDFIEEPEDLLPKLPEADIVVAYGLHPDLLLALPE 74 (224)
T ss_pred cEEEEEee-ccchHHHHHhHhhhccccceEEEEecc---ccc---cchhhCHHHhcCCCCCCCEEEEeccCccHHHHHHH
Confidence 57899987 88888888888876654 55554441 111 1121 11222211 248999965 89999999999
Q ss_pred HHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc----cccc-CCCCC----CCCCCCEEEE--
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ----CKIG-IMPGH----IHQRGCVGVV-- 174 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~----~~~~-~~~~~----~~~~G~va~v-- 174 (306)
++...|++++++ ..+- ..+..+.+++.+.+.|+.+.-|.-+=-+.+.. ..+. -+... ....|.|..|
T Consensus 75 ~~~~~~~~alIv-p~~~-~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~~p~i~~F~e~FG~P~vevev~~~~i~~V~V 152 (224)
T COG1810 75 KAAEGGVKALIV-PAEP-PEGLRKQLKEFCEELGVEFEAPEPFCSLEPNENPHIDEFAERFGKPEVEVEVENGKIKDVDV 152 (224)
T ss_pred HHHhCCccEEEE-ecCC-ChhHHHHHHHHhhhcceeeecCCccccCCCCCChHHHHHHHHcCCceEEEEecCCeEEEEEE
Confidence 999999999876 3332 23555555667888999887776554444332 1111 11111 2356777765
Q ss_pred ecChhhHHHH
Q psy8894 175 SRSGTLTYEA 184 (306)
Q Consensus 175 SqSG~~~~~~ 184 (306)
..|.--+.+.
T Consensus 153 ~RsaPCGsT~ 162 (224)
T COG1810 153 LRSAPCGSTW 162 (224)
T ss_pred EecCCCchHH
Confidence 5555555554
|
|
| >PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.29 Score=44.19 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHHHc-CCe-EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE-ecCchhHHHHHHHHHHcCCCEE
Q psy8894 39 TGKQGTFHSKQAIEY-GTK-VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI-YVPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 39 sg~~G~~~~~~l~~~-g~~-vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi-~vp~~~~~~~~~e~~~~Gi~~v 115 (306)
+|+-|.-.++++.++ ++. .+..++....-++.-..| ..-|.++++ .|++|. ..+|+...++++.|.+.|++++
T Consensus 5 ~G~yGeR~~~~i~~~~~~~~~v~~~~~p~~l~efId~p-ee~Lp~i~~---~Dl~I~y~lHPDl~~~l~~~~~e~g~kav 80 (217)
T PF02593_consen 5 DGKYGERVIENIKNYFDFCRSVIVYEIPEDLPEFIDDP-EEYLPKIPE---ADLLIAYGLHPDLTYELPEIAKEAGVKAV 80 (217)
T ss_pred eCcchHHHHHHHHhcCCCCceEEEEeCCccccccccCh-HHHccCCCC---CCEEEEeccCchhHHHHHHHHHHcCCCEE
Confidence 366777788888886 666 233444321112211112 112444444 799996 7999999999999999999998
Q ss_pred EEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 116 VCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 116 vi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
++ ....+..++.+.+++.+++.|+.+.-|.-+=-+.+
T Consensus 81 Iv-p~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~ 117 (217)
T PF02593_consen 81 IV-PSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEE 117 (217)
T ss_pred EE-ecCCCccchHHHHHHHHHhcCceeecCccccccCC
Confidence 75 43433445555555678999999999986655544
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.22 Score=48.49 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=60.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----------eecCeecc-------CCHHhhhhcC--
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----------THLDLPVF-------NTVKEARDAT-- 86 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----------~i~Gip~y-------~sl~el~~~~-- 86 (306)
...+.++|.|+|++|..|+...+.|.+.|++++..+.+...-. ...++..+ .++.++.+..
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999999875543221000 01122222 1233433321
Q ss_pred CCcEEEEecCc-------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 87 GAEATVIYVPP-------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 87 ~iDlavi~vp~-------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++|+++.+..+ .....+++.|.+.|++.++.+++
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS 182 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA 182 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 48998876532 12456778888899998776665
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.19 Score=49.12 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=68.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEee-CCCCCC---------c---eec---------------CeeccC---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV-SPGKGG---------K---THL---------------DLPVFN--- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V-nP~~~g---------~---~i~---------------Gip~y~--- 77 (306)
++|+|+|++|..|+..++.++++ .|++++.. +.+... . -+. +++++.
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~ 81 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE 81 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence 68999999999999988877765 78877654 322200 0 000 122222
Q ss_pred CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.++.+..++|+++.+++........-+|+++|.+.++ +..-+--..-.++.++++++|.+++
T Consensus 82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL--ANKEslV~aG~~i~~~a~~~g~~i~ 145 (385)
T PRK05447 82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL--ANKESLVCAGELVMDAAKKSGAQIL 145 (385)
T ss_pred HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE--eCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 244554444589999999988888888999999977433 3221100111233456788886664
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.26 Score=46.43 Aligned_cols=93 Identities=11% Similarity=0.074 Sum_probs=57.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCC----CCcee---cC------eeccCCHHhhhhcCCCcEEEEec
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGK----GGKTH---LD------LPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~----~g~~i---~G------ip~y~sl~el~~~~~iDlavi~v 95 (306)
.++|+|+|+ |.+|......|.+.|.++... -++.. .|-.+ .| .+++.+.+++ . .+|+++++|
T Consensus 5 ~m~I~IiG~-GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~vilav 80 (313)
T PRK06249 5 TPRIGIIGT-GAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDM-P--PCDWVLVGL 80 (313)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhc-C--CCCEEEEEe
Confidence 468999999 999998888888888875422 22210 01111 11 1223333332 2 389999999
Q ss_pred CchhHHHHHHHHHHcC--CCEEEEecCCCChhH
Q psy8894 96 PPPGAAKAIHEALDAE--MPLIVCITEGIPQLD 126 (306)
Q Consensus 96 p~~~~~~~~~e~~~~G--i~~vvi~t~Gf~e~~ 126 (306)
+...+.++++.+...- -..++.++-|+...+
T Consensus 81 K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e 113 (313)
T PRK06249 81 KTTANALLAPLIPQVAAPDAKVLLLQNGLGVEE 113 (313)
T ss_pred cCCChHhHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 9998888777665431 123556788886443
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.3 Score=40.65 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--CeEEEeeC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--TKVVGGVS 62 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--~~vv~~Vn 62 (306)
+|.|.|++|..|+...+.|++.| ++++ .++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~-~~~ 32 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVI-VLD 32 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEE-Eec
Confidence 58999999999999999888876 6766 443
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.2 Score=41.22 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=26.6
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
|.|.|++|-.|+...+.|++.|++++..++.
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecC
Confidence 6899999999999999999999976656654
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.26 Score=46.75 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=59.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCee-----------------ccCCHHhhhhcCCCcEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLP-----------------VFNTVKEARDATGAEAT 91 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip-----------------~y~sl~el~~~~~iDla 91 (306)
++|+|+|+ |.+|......|.+.|+++. .+++...-+. ..|+. +..+.++ .. +.|++
T Consensus 3 mkI~IiG~-G~mG~~~A~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~D~v 77 (341)
T PRK08229 3 ARICVLGA-GSIGCYLGGRLAAAGADVT-LIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAA-LA--TADLV 77 (341)
T ss_pred ceEEEECC-CHHHHHHHHHHHhcCCcEE-EEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhh-cc--CCCEE
Confidence 47999999 9999999999999898865 4554320011 11221 2233432 23 49999
Q ss_pred EEecCchhHHHHHHHHHHc-CC-CEEEEecCCCChh
Q psy8894 92 VIYVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQL 125 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~ 125 (306)
+++++.....++++++... .- ..++.++.|+...
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 9999999999988877653 22 2344467788654
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.031 Score=52.12 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec----------Cc---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV----------PP--- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v----------p~--- 97 (306)
+||.|+|++|-.|+...+.+.+.|+++++ ++... .++.-...+.++.++..||++|-|. .+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~-~~r~~-----~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a 74 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIA-TSRSD-----LDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEA 74 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEE-ESTTC-----S-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEE-eCchh-----cCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhh
Confidence 58999999999999999999988988774 45442 1122233456665544699999875 22
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 -----PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 -----~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.+. +|+
T Consensus 75 ~~iN~~~~~~la~~~~~~~~~li~-~ST 101 (286)
T PF04321_consen 75 YAINVDATKNLAEACKERGARLIH-IST 101 (286)
T ss_dssp HHHHTHHHHHHHHHHHHCT-EEEE-EEE
T ss_pred HHHhhHHHHHHHHHHHHcCCcEEE-eec
Confidence 2233567788889999776 454
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.093 Score=49.41 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce-------------ecC-------------eeccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT-------------HLD-------------LPVFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~-------------i~G-------------ip~y~sl~el~ 83 (306)
++|+|+|+ |.+|......+.+.|++++ .+|++... +. -.| +....+++++.
T Consensus 3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGA-GLIGRAWAIVFARAGHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECc-cHHHHHHHHHHHHCCCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 47999997 9999998899999999865 66665310 00 012 24556787776
Q ss_pred hcCCCcEEEEecCchh--HHHHHHHHHHc
Q psy8894 84 DATGAEATVIYVPPPG--AAKAIHEALDA 110 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~--~~~~~~e~~~~ 110 (306)
+. .|+++.++|.+. -..++.++.+.
T Consensus 81 ~~--ad~Vi~avpe~~~~k~~~~~~l~~~ 107 (308)
T PRK06129 81 AD--ADYVQESAPENLELKRALFAELDAL 107 (308)
T ss_pred CC--CCEEEECCcCCHHHHHHHHHHHHHh
Confidence 54 999999999763 34455555443
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.31 Score=43.89 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC----C----c------eecCeeccCC-----HHhhhhcCCCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG----G----K------THLDLPVFNT-----VKEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~----g----~------~i~Gip~y~s-----l~el~~~~~iD 89 (306)
+.++|+|.|+ |+.|+...+.|.+.|.++++..|.+.. | + +..++..|+. -+++.. .++|
T Consensus 22 ~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~D 99 (217)
T cd05211 22 EGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG-LDVD 99 (217)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee-cccc
Confidence 4689999999 999999999999999998887665420 0 0 1123333331 123332 2589
Q ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC----Cceec
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC----PGIIA 152 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc----~Gi~~ 152 (306)
+++-|.+.... .-+.+.+.++|.|+-.+.+....+..+ +-+++|+.+ .|.. -|++.
T Consensus 100 VlipaA~~~~i--~~~~a~~l~a~~V~e~AN~p~t~~a~~----~L~~~Gi~v-~Pd~~~NaGGvi~ 159 (217)
T cd05211 100 IFAPCALGNVI--DLENAKKLKAKVVAEGANNPTTDEALR----ILHERGIVV-APDIVANAGGVIV 159 (217)
T ss_pred EEeeccccCcc--ChhhHhhcCccEEEeCCCCCCCHHHHH----HHHHCCcEE-EChHHhcCCCeEe
Confidence 99888776522 334555667887664444433333333 446778544 4754 35554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.27 Score=44.07 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----eecCeecc-CCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVF-NTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y-~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+++++|+|+ |++|+...+.+.+.|++++.. +.+.... +..+..+- .+.+|..+. -|++++.+|-+..+++
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~eV~ig-s~r~~~~~~a~a~~l~~~i~~~~~~dA~~~--aDVVvLAVP~~a~~~v 76 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGHEVIIG-SSRGPKALAAAAAALGPLITGGSNEDAAAL--ADVVVLAVPFEAIPDV 76 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCCeEEEe-cCCChhHHHHHHHhhccccccCChHHHHhc--CCEEEEeccHHHHHhH
Confidence 367888998 999999999999999997633 2221001 12222222 245666654 8999999999999999
Q ss_pred HHHHHH-cCCCEEEE
Q psy8894 104 IHEALD-AEMPLIVC 117 (306)
Q Consensus 104 ~~e~~~-~Gi~~vvi 117 (306)
+++..+ .+ ..|++
T Consensus 77 ~~~l~~~~~-~KIvI 90 (211)
T COG2085 77 LAELRDALG-GKIVI 90 (211)
T ss_pred HHHHHHHhC-CeEEE
Confidence 999997 45 33443
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.15 Score=51.88 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|++.. +++++..+ .|++++++|.. .+..++
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~~~-~l~ell~~--aDiV~l~lP~t~~t~~li 212 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGMKVI-AYDPYISPERAAQLGVELV-SLDELLAR--ADFITLHTPLTPETRGLI 212 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCCEEE-cHHHHHhh--CCEEEEccCCChHhhcCc
Confidence 3588999999 9999999999999999976 677743111 22355544 79999876 99999999974 344444
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.074 Score=49.60 Aligned_cols=91 Identities=18% Similarity=0.065 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----e----c--------C-------------eeccCCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----H----L--------D-------------LPVFNTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----i----~--------G-------------ip~y~sl~ 80 (306)
++|+|+|+ |.||......+.+.|++++ .+|++...-+ + . | +....+++
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~ 81 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSYE 81 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCHH
Confidence 68999999 9999999888988999865 5555431000 0 0 1 11223343
Q ss_pred hhhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 81 EARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 81 el~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
.+ + +.|+++.++|.+. -.++++++.+. .-+.+++ -|+|++..+
T Consensus 82 ~~-~--~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~ 128 (291)
T PRK06035 82 SL-S--DADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE 128 (291)
T ss_pred Hh-C--CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHH
Confidence 33 3 3899999999876 35566665443 2233433 345665443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.091 Score=48.94 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=57.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---------------------------ecCeeccCCHHhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---------------------------HLDLPVFNTVKEA 82 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---------------------------i~Gip~y~sl~el 82 (306)
++|+|+|+ |.+|......+.+.|+++. .++++... +. ...+....++++.
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a 81 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA 81 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence 68999999 9999988888888899864 55543200 00 1233455677776
Q ss_pred hhcCCCcEEEEecCch--hHHHHHHHHHHc-CCCEEE-EecCCCChh
Q psy8894 83 RDATGAEATVIYVPPP--GAAKAIHEALDA-EMPLIV-CITEGIPQL 125 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~--~~~~~~~e~~~~-Gi~~vv-i~t~Gf~e~ 125 (306)
.+. .|+++.++|.+ ...++++++.+. .-+.++ .-|+.++..
T Consensus 82 ~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~ 126 (287)
T PRK08293 82 VKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS 126 (287)
T ss_pred hcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH
Confidence 554 89999999955 456666666553 222333 234455443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.19 Score=51.51 Aligned_cols=96 Identities=18% Similarity=0.266 Sum_probs=58.8
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCce----e-------------cCeecc-CC---HHh
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKT----H-------------LDLPVF-NT---VKE 81 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~----i-------------~Gip~y-~s---l~e 81 (306)
...+.+.+.|+|.|++|..|+...+.|.+.|+++++.+ |+... .. + ..+.++ -+ .++
T Consensus 74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 34455678899999999999999999999999976443 22110 00 0 011111 12 222
Q ss_pred hhhc-CCCcEEEEecCch----------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 82 ARDA-TGAEATVIYVPPP----------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 82 l~~~-~~iDlavi~vp~~----------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+.+. .++|++|.+.... .+..+++.|.+.|++.+|++++
T Consensus 153 I~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 153 IGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred HHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 2211 1489888765321 2455677777889988887776
|
|
| >PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.62 Score=36.21 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=52.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe---cCchhHHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY---VPPPGAAKAIHEAL 108 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~---vp~~~~~~~~~e~~ 108 (306)
+|+|||.-.+.-...-+.+.++|++.+.- .++. +.+ +--..|.+...+ +|++|++ +.......+-+.|.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h-g~~~-~~~----~~~~~l~~~i~~--aD~VIv~t~~vsH~~~~~vk~~ak 72 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH-GRDG-GDE----KKASRLPSKIKK--ADLVIVFTDYVSHNAMWKVKKAAK 72 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE-ecCC-CCc----cchhHHHHhcCC--CCEEEEEeCCcChHHHHHHHHHHH
Confidence 58999964455555566788889996533 2221 110 011114444443 7999985 56677777888888
Q ss_pred HcCCCEEEEecCCCChhHHHH
Q psy8894 109 DAEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
+.+++.+. +.+.+-..+++
T Consensus 73 k~~ip~~~--~~~~~~~~l~~ 91 (97)
T PF10087_consen 73 KYGIPIIY--SRSRGVSSLER 91 (97)
T ss_pred HcCCcEEE--ECCCCHHHHHH
Confidence 89999544 45454444443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.34 Score=46.09 Aligned_cols=84 Identities=14% Similarity=0.089 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~--~ 105 (306)
.-++++|+|. |+.|+.+.+.++.+|++++ ..+|.. .. ... -+.+++++..+ .|++++++|-. .+..++ +
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~fgm~V~-~~~~~~--~~-~~~-~~~~l~ell~~--sDiv~l~lPlt~~T~~li~~~ 218 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAFGMRVL-IGQLPG--RP-ARP-DRLPLDELLPQ--VDALTLHCPLTEHTRHLIGAR 218 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCC--Cc-ccc-cccCHHHHHHh--CCEEEECCCCChHHhcCcCHH
Confidence 4579999999 9999999999999999987 567643 11 111 24579999876 89999999953 333333 3
Q ss_pred HHHHcCCCEEEEecCC
Q psy8894 106 EALDAEMPLIVCITEG 121 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~G 121 (306)
.....+-.+++ +..+
T Consensus 219 ~~~~mk~ga~l-IN~a 233 (317)
T PRK06487 219 ELALMKPGALL-INTA 233 (317)
T ss_pred HHhcCCCCeEE-EECC
Confidence 33334444444 3444
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.34 Score=44.51 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=80.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcC-CCcEEEEecCch-hHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDAT-GAEATVIYVPPP-GAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~-~iDlavi~vp~~-~~~~~~~e~ 107 (306)
.+.+||. |+||....+++++.|.++|+. +||....+ .-.|..--.|++++..+. .|..+-+.+|+- .+..+++++
T Consensus 2 ~iGmiGL-GrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l 80 (300)
T COG1023 2 QIGMIGL-GRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL 80 (300)
T ss_pred cceeecc-chhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence 5789999 999999999999999996644 77764211 123556666777776542 478888999987 788888888
Q ss_pred HHc-CCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 108 LDA-EMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 108 ~~~-Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
..+ ...-++ +-.|=+. .+..++. +..+++|+.++--.+-|=+.
T Consensus 81 a~~L~~GDiv-IDGGNS~y~Ds~rr~-~~l~~kgi~flD~GTSGG~~ 125 (300)
T COG1023 81 APLLSAGDIV-IDGGNSNYKDSLRRA-KLLAEKGIHFLDVGTSGGVW 125 (300)
T ss_pred HhhcCCCCEE-EECCccchHHHHHHH-HHHHhcCCeEEeccCCCCch
Confidence 764 333344 4555442 2333333 24578899988777665554
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.13 Score=52.17 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=64.5
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------ecC-------------eeccCCH
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------HLD-------------LPVFNTV 79 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------i~G-------------ip~y~sl 79 (306)
+.+.++|+|||+ |.||.-....+.+.|++++ .+|.+...-+ -.| +....++
T Consensus 2 ~~~~~kV~VIGa-G~MG~gIA~~la~aG~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~ 79 (503)
T TIGR02279 2 LINVVTVAVIGA-GAMGAGIAQVAASAGHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDL 79 (503)
T ss_pred CCCccEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCH
Confidence 345678999999 9999999999999999965 5554421000 012 3345567
Q ss_pred HhhhhcCCCcEEEEecCchhHH--HHHHHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 80 KEARDATGAEATVIYVPPPGAA--KAIHEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 80 ~el~~~~~iDlavi~vp~~~~~--~~~~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+++. +.|++|-++|.+... .+..++.+. .-+.++. =|+.++.+++.+...+-.|..|+..+-|
T Consensus 80 ~~l~---~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~P 146 (503)
T TIGR02279 80 HALA---DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNP 146 (503)
T ss_pred HHhC---CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCc
Confidence 7664 389999999974432 233443332 2233332 2556655443322111123445555553
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.19 Score=48.37 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCC---------------C---------CCCc--eecC--eeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSP---------------G---------KGGK--THLD--LPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP---------------~---------~~g~--~i~G--ip~y~- 77 (306)
.+|+|.|+ |+.|+...+.+.+. .++++ .||. . ..++ .+.| ++++.
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vv-aind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVV-AINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEE-EecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 47999999 99999999988774 34555 3442 1 0111 1234 34442
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
++++++= +.++|+++.|+......+.+...++.|.+.|++ |.-+
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i-Sap~ 125 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF-SHPG 125 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe-cCCc
Confidence 5677764 236999999999999999999999999998775 5444
|
|
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.29 Score=48.17 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=33.7
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
....++..|.|+|++|+.|+...+.|++.||.+-+.|=..
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~ 113 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDE 113 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccCh
Confidence 3456789999999999999999999999999876665443
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.38 Score=42.11 Aligned_cols=89 Identities=25% Similarity=0.293 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCC-----Cc----e----------e--cCeeccCCHHhhhhcCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKG-----GK----T----------H--LDLPVFNTVKEARDATGA 88 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~-----g~----~----------i--~Gip~y~sl~el~~~~~i 88 (306)
++|+|+|. |..|-...-.|.+.|+++++. +|+... |. | + ..+....+.++.... .
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~--a 77 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKD--A 77 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH---
T ss_pred CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhc--c
Confidence 58999999 888877777888899998843 333211 00 0 0 123455567775554 8
Q ss_pred cEEEEecCchh----------HHHHHHHHHHcC-CCEEEEecCCC
Q psy8894 89 EATVIYVPPPG----------AAKAIHEALDAE-MPLIVCITEGI 122 (306)
Q Consensus 89 Dlavi~vp~~~----------~~~~~~e~~~~G-i~~vvi~t~Gf 122 (306)
|++++|+|... +..+++.....- -..++++-+=+
T Consensus 78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 99999998543 455566655532 23444445433
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.12 Score=49.89 Aligned_cols=64 Identities=16% Similarity=0.163 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec---------------CeeccCCHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL---------------DLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~---------------Gip~y~sl~el~~~~~iDlavi 93 (306)
.-++++|+|. |++|+...+.++.+|++++ ..||........ +. -+.+++++..+ .|++++
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~--aDiVvl 232 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGVKLL-ATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGE--ADIVVL 232 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCCEEE-EECCCCChhhhhhhccccccccccccccC-cccCHHHHHhh--CCEEEE
Confidence 3579999999 9999999999999999986 567652101100 11 35689999876 999999
Q ss_pred ecCc
Q psy8894 94 YVPP 97 (306)
Q Consensus 94 ~vp~ 97 (306)
++|-
T Consensus 233 ~lPl 236 (347)
T PLN02928 233 CCTL 236 (347)
T ss_pred CCCC
Confidence 9984
|
|
| >COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.59 Score=45.42 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=87.6
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+|+++--.++++.+.++.....|--...|.-+|+.+..+ .+.+-++.+..||++|+|++-+=+. +
T Consensus 254 LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e-~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi 332 (387)
T COG0045 254 LDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAE-RVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGII 332 (387)
T ss_pred ecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHH-HHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHH
Confidence 359999999999999999999998999999999999986333 4888899999999999997764332 1
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGNELL 297 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~~~~ 297 (306)
...++|+|+=-.|+... .=...++++| +..+++++|...-+.
T Consensus 333 ~Al~e~~~~vPlVVRL~GtN~e--------------------~Gk~iL~esg~~i~~~~~l~~aa~k~v 381 (387)
T COG0045 333 AALKEVGVNVPLVVRLEGTNVE--------------------EGKRILAESGLNIIAADDLDEAAEKAV 381 (387)
T ss_pred HHHHhcCCCCCEEEEcCCCCHH--------------------HHHHHHHHcCCceEecccHHHHHHHHH
Confidence 24679999987777643 2268899999 788888877766554
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.31 Score=46.51 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCC-----------------CCc--------ee--cCeeccCCH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGK-----------------GGK--------TH--LDLPVFNTV-- 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~-----------------~g~--------~i--~Gip~y~sl-- 79 (306)
.+|+|-|+ |+.||.+.+.+.+. ++++++..++.. .++ .+ .+++++.+.
T Consensus 2 ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 2 IKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred cEEEEecC-cHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence 58999999 99999999988776 488886544111 010 11 257777653
Q ss_pred Hhhhhc-CCCcEEEEecCchhHHHHHHHHHHc-CCCEEEEecCC
Q psy8894 80 KEARDA-TGAEATVIYVPPPGAAKAIHEALDA-EMPLIVCITEG 121 (306)
Q Consensus 80 ~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~-Gi~~vvi~t~G 121 (306)
++||-. .++|++|.|+|.-...+-.+.-+++ |+|.|++-.++
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~ 124 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG 124 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC
Confidence 456543 3689999999999988888887877 69998864444
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.19 Score=41.71 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCe-------------eccCCHHhhhhcCCCcEEEEecCc
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDL-------------PVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gi-------------p~y~sl~el~~~~~iDlavi~vp~ 97 (306)
|+|+|+ |.+|....-.|.+.|.++.....++. .+. ..|+ +.+..-+.. ....+|++++++..
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~~V~l~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGHDVTLVSRSPR-LEAIKEQGLTITGPDGDETVQPPIVISAPSA-DAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTCEEEEEESHHH-HHHHHHHCEEEEETTEEEEEEEEEEESSHGH-HHSTESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCCceEEEEcccc-HHhhhheeEEEEecccceecccccccCcchh-ccCCCcEEEEEecc
Confidence 789999 99999888888888888653333331 010 1121 111111111 12259999999999
Q ss_pred hhHHHHHHHHHHcCCC--EEEEecCCCChhH
Q psy8894 98 PGAAKAIHEALDAEMP--LIVCITEGIPQLD 126 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~--~vvi~t~Gf~e~~ 126 (306)
....++++.+...--+ .++.++.|+...+
T Consensus 78 ~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~ 108 (151)
T PF02558_consen 78 YQLEQALQSLKPYLDPNTTIVSLQNGMGNEE 108 (151)
T ss_dssp GGHHHHHHHHCTGEETTEEEEEESSSSSHHH
T ss_pred cchHHHHHHHhhccCCCcEEEEEeCCCCcHH
Confidence 9999999997665333 5777899986543
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.3 Score=40.09 Aligned_cols=115 Identities=16% Similarity=0.184 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |..|....++|...|..-+..+|+.....+ +.-...|. .+.+...+..|++-+...+..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 578999999 889999999999999975557887653221 11111221 122222223467777777766
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+..++.. .+...|+..+.- ......+.++|+++++.++--...|
T Consensus 81 ~~~~~~~~~~-~~~d~vi~~~d~---~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 81 IDEENIEELL-KDYDIVIDCVDS---LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp CSHHHHHHHH-HTSSEEEEESSS---HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred cccccccccc-cCCCEEEEecCC---HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 6666677766 467766543322 2223334468899998777544333
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.62 Score=46.44 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=68.8
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--ce---------ec----C
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--KT---------HL----D 72 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~~---------i~----G 72 (306)
..+..+++|+|+|++|..|+-.++.++++ .|++++.. +|+... ++ +. +
T Consensus 52 ~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~ 131 (454)
T PLN02696 52 KGWDGPKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDK 131 (454)
T ss_pred cccCCccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCC
Confidence 56777899999999999999888877775 67776541 222100 00 00 1
Q ss_pred eeccC---CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 73 LPVFN---TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 73 ip~y~---sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
.+++. .+.++....++|++|-.+-.-.-..-.-+++++|.+. . ++.. |.- .-.++.++++++|.+|+
T Consensus 132 ~~vl~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~V-A-LANK--ESLV~aG~lI~~~ak~~~~~Il 203 (454)
T PLN02696 132 PEIIPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDI-A-LANK--ETLIAGGPFVLPLAKKHGVKIL 203 (454)
T ss_pred cEEEECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcE-E-EecH--HHHHhhHHHHHHHHHHcCCeEe
Confidence 22333 3455554445899988777765555557888898663 3 2322 110 11233457788886655
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.64 Score=50.03 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-------CCHHhhhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-------NTVKEARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-------~sl~el~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|..|+...+.|.+.|++++....... .....++..+ .++.++.+. +|.+|.+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~-~~~~~~v~~v~gDL~D~~~l~~al~~--vD~VVHlAa~~~~~~~ 77 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRP-DSWPSSADFIAADIRDATAVESAMTG--ADVVAHCAWVRGRNDH 77 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCch-hhcccCceEEEeeCCCHHHHHHHHhC--CCEEEECCCcccchHH
Confidence 37999999999999999999999999875543211 0000122211 234444443 9999887543
Q ss_pred ---hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 98 ---PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 98 ---~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.....+++.|.+.|++.++.+++..
T Consensus 78 vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 78 INIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 2345677888888998888777653
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.49 Score=45.14 Aligned_cols=87 Identities=9% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHH-HcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAI-EYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
.-++++|+|. |+.|+.+.+.++ .+|++++ ..+|....+ ...|.+ |.+++++.++ .|++++.+|-.. +..++
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm~V~-~~~~~~~~~~~~~~~~~-~~~l~ell~~--sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNMPIL-YNARRHHKEAEERFNAR-YCDLDTLLQE--SDFVCIILPLTDETHHLF 218 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCCEEE-EECCCCchhhHHhcCcE-ecCHHHHHHh--CCEEEEeCCCChHHhhcc
Confidence 4589999999 999999999887 7899976 456542111 123443 5689999887 999999998533 33333
Q ss_pred --HHHHHcCCCEEEEecCC
Q psy8894 105 --HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 --~e~~~~Gi~~vvi~t~G 121 (306)
+.....+-.+++| .++
T Consensus 219 ~~~~l~~mk~ga~lI-N~a 236 (323)
T PRK15409 219 GAEQFAKMKSSAIFI-NAG 236 (323)
T ss_pred CHHHHhcCCCCeEEE-ECC
Confidence 3333445455443 443
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.39 Score=46.17 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=61.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc------------------ee----------cC--eeccC-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK------------------TH----------LD--LPVFN- 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~------------------~i----------~G--ip~y~- 77 (306)
+.||+|+|+ |++|+.+.+.+.+. +.++++..||...-+ ++ .| ++++.
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 479999999 99999998887664 788887766643100 01 11 12221
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.++++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~Vii 125 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVI 125 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEe
Confidence 1224431 136999999999999999999999999998775
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.44 Score=45.30 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=57.6
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Cce------------ecCeeccC-C------HHhhhhc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GKT------------HLDLPVFN-T------VKEARDA 85 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~~------------i~Gip~y~-s------l~el~~~ 85 (306)
+..+.++|.|.|++|-.|+...+.|++.|+++++..+.... ... ...+..+. + ++++.+.
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~ 90 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN 90 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence 44556899999999999999999999999998754321110 000 00111111 2 3344443
Q ss_pred CCCcEEEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 86 TGAEATVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 86 ~~iDlavi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+|.+|=+... ..+..+++.|.+.|++.++..++
T Consensus 91 --~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS 141 (348)
T PRK15181 91 --VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAAS 141 (348)
T ss_pred --CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 8988755321 12346788888899987775553
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.15 Score=48.60 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----------------------ecCeeccCCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----------------------HLDLPVFNTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----------------------i~Gip~y~sl~el~~~~ 86 (306)
.++|+|||+ |.||.-....+...|+++. ..|+.....+ ...+....++++....
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~- 83 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD- 83 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC-
Confidence 478999999 9999988888888999975 5555421000 0112344567776654
Q ss_pred CCcEEEEecCchhH
Q psy8894 87 GAEATVIYVPPPGA 100 (306)
Q Consensus 87 ~iDlavi~vp~~~~ 100 (306)
.|+++-++|....
T Consensus 84 -aDlViEavpE~l~ 96 (321)
T PRK07066 84 -ADFIQESAPEREA 96 (321)
T ss_pred -CCEEEECCcCCHH
Confidence 8999999986553
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.59 Score=44.71 Aligned_cols=88 Identities=14% Similarity=0.188 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHH-HHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA-KAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~-~~~ 104 (306)
-+-+++.|+|. |+.|+.+.+.++.+|++++ .-||... -++..+ -.|-+++++.++ .|++++.+|...-- .++
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~~Fgm~v~-y~~~~~~~~~~~~~~-~~y~~l~ell~~--sDii~l~~Plt~~T~hLi 218 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLKGFGMKVL-YYDRSPNPEAEKELG-ARYVDLDELLAE--SDIISLHCPLTPETRHLI 218 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhcCCCEEE-EECCCCChHHHhhcC-ceeccHHHHHHh--CCEEEEeCCCChHHhhhc
Confidence 44689999999 9999999999998899976 4444431 012223 345559999987 99999998874433 333
Q ss_pred --HHHHHcCCCEEEEecCC
Q psy8894 105 --HEALDAEMPLIVCITEG 121 (306)
Q Consensus 105 --~e~~~~Gi~~vvi~t~G 121 (306)
+....++-.++++ -++
T Consensus 219 n~~~l~~mk~ga~lV-Nta 236 (324)
T COG1052 219 NAEELAKMKPGAILV-NTA 236 (324)
T ss_pred CHHHHHhCCCCeEEE-ECC
Confidence 4444555555554 443
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.67 Score=44.72 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCChHHHHHHH--------HcCCe--EEEeeCCCCCCceecCeecc----------------C-CHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI--------EYGTK--VVGGVSPGKGGKTHLDLPVF----------------N-TVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~--------~~g~~--vv~~VnP~~~g~~i~Gip~y----------------~-sl~el~ 83 (306)
.+|+++|. |+.|+..++.+. ++|.+ +++..+.+..-..-.|++.. . +..++.
T Consensus 3 i~I~liG~-G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eEEEEEec-ChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 58999999 999987765432 23444 66555543210001122110 1 111221
Q ss_pred hc-CCCcEEEEecCc-----hhHHHHHHHHHHcCCCEEEEecCCC-Ch-hHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 84 DA-TGAEATVIYVPP-----PGAAKAIHEALDAEMPLIVCITEGI-PQ-LDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 84 ~~-~~iDlavi~vp~-----~~~~~~~~e~~~~Gi~~vvi~t~Gf-~e-~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.. .++|++|.++|. +.+.+.+++++++|++.| |+.= .- ....++ .++|+++|..+.=--+.|
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV---TANK~~la~~~~eL-~~lA~~~g~~~~yEasVg 151 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV---AISKGALVTNWREI-NEAAKIANVRIRYSGATA 151 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE---cCCcHHHhccHHHH-HHHHHHcCCeEEEeeeee
Confidence 11 148999999886 467788899999999942 4421 11 112333 457899997766333333
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.19 Score=47.47 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeec--cCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPV--FNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..++|+|+|+ |.+|+...+.+...|...+..+|+.... .+ ..|..+ +.++.+...+ .|+++.++|.....+
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~--aDvVi~at~~~~~~~ 253 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNE--ADVVISATGAPHYAK 253 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhc--CCEEEECCCCCchHH
Confidence 4689999999 9999999999988776655678876411 11 123222 2234444433 899999999887756
Q ss_pred HHHHHHHc
Q psy8894 103 AIHEALDA 110 (306)
Q Consensus 103 ~~~e~~~~ 110 (306)
.++.+.+.
T Consensus 254 ~~~~~~~~ 261 (311)
T cd05213 254 IVERAMKK 261 (311)
T ss_pred HHHHHHhh
Confidence 66665543
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.39 Score=38.58 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=47.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeC-CCCCCcee---cC-ee--ccCCH--HhhhhcCCCcEEEEecCchhHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVS-PGKGGKTH---LD-LP--VFNTV--KEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~Vn-P~~~g~~i---~G-ip--~y~sl--~el~~~~~iDlavi~vp~~~~~ 101 (306)
+|+|+|+.|..|+...+.+.+. ++++++.+. ++..++.. .+ +. .+..+ .++.. .+.|++++++|++.+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV~~~~~~~~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEE-LAVDIVFLALPHGVSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhh-cCCCEEEEcCCcHHHH
Confidence 5899999899999888888885 888776633 32212221 11 11 11111 22221 2489999999999999
Q ss_pred HHHHHH
Q psy8894 102 KAIHEA 107 (306)
Q Consensus 102 ~~~~e~ 107 (306)
+.++..
T Consensus 80 ~~~~~~ 85 (122)
T smart00859 80 EIAPLL 85 (122)
T ss_pred HHHHHH
Confidence 976543
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.34 Score=44.79 Aligned_cols=85 Identities=18% Similarity=0.166 Sum_probs=48.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---cCeeccC------CHHhhhhcCCCcEEEEecCchh--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---LDLPVFN------TVKEARDATGAEATVIYVPPPG-- 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---~Gip~y~------sl~el~~~~~iDlavi~vp~~~-- 99 (306)
++|.|.|.++. |+...+.|.+.|+++++-+--.+..+.. .+.++.. ++.++..++++|++|++++|-+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~ 79 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAAQ 79 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHH
Confidence 47999999886 9999999998999876543322211111 1223321 2433433445666666666533
Q ss_pred -HHHHHHHHHHcCCCEEE
Q psy8894 100 -AAKAIHEALDAEMPLIV 116 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vv 116 (306)
...+.+.|.+.|++.+=
T Consensus 80 is~~a~~a~~~~~ipylR 97 (256)
T TIGR00715 80 ITTNATAVCKELGIPYVR 97 (256)
T ss_pred HHHHHHHHHHHhCCcEEE
Confidence 23345555556665543
|
This enzyme was found to be a monomer by gel filtration. |
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.58 Score=44.24 Aligned_cols=196 Identities=18% Similarity=0.225 Sum_probs=116.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeE-EEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKV-VGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~v-v~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.-...++|..+|. |.||+.-.++|.+.||++ ||-+++... + ...|..++.+-.|+.+. .|+++.++|.+....
T Consensus 31 ~~~s~~~iGFIGL-G~MG~~M~~nLik~G~kVtV~dr~~~k~-~~f~~~Ga~v~~sPaeVae~--sDvvitmv~~~~~v~ 106 (327)
T KOG0409|consen 31 ITPSKTRIGFIGL-GNMGSAMVSNLIKAGYKVTVYDRTKDKC-KEFQEAGARVANSPAEVAED--SDVVITMVPNPKDVK 106 (327)
T ss_pred CCcccceeeEEee-ccchHHHHHHHHHcCCEEEEEeCcHHHH-HHHHHhchhhhCCHHHHHhh--cCEEEEEcCChHhhH
Confidence 3445788999999 999999999999999994 444555431 2 23588999999999987 999999988765443
Q ss_pred -HHHH------HHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecCccccccCCCCC--------C-
Q psy8894 103 -AIHE------ALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAPEQCKIGIMPGH--------I- 165 (306)
Q Consensus 103 -~~~e------~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~~~~~~~~~~--------~- 165 (306)
++.. .+..|-+..+-.|+ ....-..++.++ ++..+.+.+ .|=+-|.--...+...++... .
T Consensus 107 ~v~~g~~Gvl~g~~~g~~~~vDmST-idp~~s~ei~~~-i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 107 DVLLGKSGVLSGIRPGKKATVDMST-IDPDTSLEIAKA-ISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred HHhcCCCcceeeccCCCceEEeccc-cCHHHHHHHHHH-HHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 3322 11122222122222 222223344443 445555444 888877776655433333221 0
Q ss_pred --CCCC-CEEEEecChhhHHH--HHHHH-HhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEE
Q psy8894 166 --HQRG-CVGVVSRSGTLTYE--AVHQT-TQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILI 230 (306)
Q Consensus 166 --~~~G-~va~vSqSG~~~~~--~~~~~-~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly 230 (306)
-.-| .+=+.-++|.-... +.+++ .-.=+|++..+..|-. .++|...|++-+.. -......+|
T Consensus 185 ~~~~mGk~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r--~GLd~~~l~eiln~-G~~~S~~~~ 252 (327)
T KOG0409|consen 185 VFKLMGKNVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADR--LGLDAKKLLEILNT-GRCWSSMFY 252 (327)
T ss_pred HHHHhcceEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhc-CCcccHHHh
Confidence 0124 56666677643322 11221 1223566666777777 78889999998877 444444445
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.79 Score=45.72 Aligned_cols=116 Identities=9% Similarity=0.114 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-------CCCCCceec-----------CeeccC--------CHHhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-------PGKGGKTHL-----------DLPVFN--------TVKEA 82 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-------P~~~g~~i~-----------Gip~y~--------sl~el 82 (306)
+.++|+|.|. |+.|+...+.|.+.|.++++..| |+. -.+. .+.-|+ +-+++
T Consensus 231 ~g~rVaIqGf-GnVG~~~A~~L~~~GakVVavsDs~G~iyn~~G--LD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i 307 (445)
T PRK09414 231 EGKRVVVSGS-GNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEG--IDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSP 307 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCC--CCHHHHHHHHHhcCCchhhhhhhcCCeecCCccc
Confidence 4689999999 99999999999999999987644 321 1110 111121 11222
Q ss_pred hhcCCCcEEEEecCc-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceecC
Q psy8894 83 RDATGAEATVIYVPP-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIAP 153 (306)
Q Consensus 83 ~~~~~iDlavi~vp~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~~ 153 (306)
.. .++|+.+-|... ....+.+....+.++|.|+=.+-|....+..+ +-+++|+.++ |. +-|++..
T Consensus 308 ~~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~----~L~~rGI~~v-PD~laNaGGVivs 377 (445)
T PRK09414 308 WS-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIE----VFLEAGVLFA-PGKAANAGGVATS 377 (445)
T ss_pred cc-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHH----HHHHCCcEEE-CchhhcCCCeeee
Confidence 22 358888877554 33455566666668887664444554333333 4477898776 64 4466654
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.85 Score=45.71 Aligned_cols=105 Identities=13% Similarity=0.082 Sum_probs=65.9
Q ss_pred CChHHHHHHHHcCCeEEEeeCCCCCCc-e-e------cCeeccCCHHhhhhcC-CCcEEEEecCchhH-HHHHHHHHHc-
Q psy8894 42 QGTFHSKQAIEYGTKVVGGVSPGKGGK-T-H------LDLPVFNTVKEARDAT-GAEATVIYVPPPGA-AKAIHEALDA- 110 (306)
Q Consensus 42 ~G~~~~~~l~~~g~~vv~~VnP~~~g~-~-i------~Gip~y~sl~el~~~~-~iDlavi~vp~~~~-~~~~~e~~~~- 110 (306)
||+...++|.+.||++. .-|...... + . .|+..+.|++|+.+.. .+|++++++|...+ .++++.++..
T Consensus 1 MG~~mA~nL~~~G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcC
Confidence 68888899999999975 556553111 1 1 2477888999988631 38999999998644 5565666654
Q ss_pred CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 111 EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 111 Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
....+|| .++-. ..+..++. +.+++.|++.++-.-.|
T Consensus 80 ~~GdiiID~gn~~-~~~t~~~~-~~l~~~Gi~fvdapVSG 117 (459)
T PRK09287 80 EKGDIIIDGGNSN-YKDTIRRE-KELAEKGIHFIGMGVSG 117 (459)
T ss_pred CCCCEEEECCCCC-HHHHHHHH-HHHHhcCCeEEecCCCC
Confidence 2233443 33222 33334443 34678899888655544
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.52 Score=43.27 Aligned_cols=82 Identities=12% Similarity=0.088 Sum_probs=56.6
Q ss_pred EEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-----------h----
Q psy8894 34 ICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-----------P---- 98 (306)
Q Consensus 34 aVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-----------~---- 98 (306)
.|.|++|-.|+...+.|++.|++++...+... .++.-+.+++++.+..++|++|-+... .
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~~-----~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~ 75 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHKE-----LDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIR 75 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecccc-----CCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHH
Confidence 37899999999999999999988663332221 233445567776665568998866411 1
Q ss_pred ----hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+++.++.+++
T Consensus 76 ~n~~~~~~ll~~~~~~~~~~~i~~SS 101 (306)
T PLN02725 76 ENLQIQTNVIDAAYRHGVKKLLFLGS 101 (306)
T ss_pred HHhHHHHHHHHHHHHcCCCeEEEeCc
Confidence 2445788888899987776665
|
|
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.42 Score=42.84 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=63.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC----eEEEeeCCCCCCc---eecCeeccCC----HHhhhhcCCCcEEEEecC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT----KVVGGVSPGKGGK---THLDLPVFNT----VKEARDATGAEATVIYVP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~----~vv~~VnP~~~g~---~i~Gip~y~s----l~el~~~~~iDlavi~vp 96 (306)
.+..+|+|+|- |+.|+..+-.++++|- ...-++||...|- .-.|++.-.. |-..|+..++|++...+.
T Consensus 2 ~sk~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdats 80 (310)
T COG4569 2 SSKRKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATS 80 (310)
T ss_pred CCcceEEEEcc-CcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccc
Confidence 45678999997 9999987555555432 2333689986432 2346554432 334455546889999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+-.+.+......+.||+.+- +|+
T Consensus 81 a~~h~~~a~~~ae~gi~~id-ltp 103 (310)
T COG4569 81 AGAHVKNAAALAEAGIRLID-LTP 103 (310)
T ss_pred cchhhcchHhHHhcCCceee-cch
Confidence 99999999999999999765 464
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.86 Score=43.88 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=47.7
Q ss_pred HHHHHHcCCeEEEeeCCCCCC--------ceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHHHHHHc-CCCEEE
Q psy8894 47 SKQAIEYGTKVVGGVSPGKGG--------KTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIHEALDA-EMPLIV 116 (306)
Q Consensus 47 ~~~l~~~g~~vv~~VnP~~~g--------~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~e~~~~-Gi~~vv 116 (306)
..+|.+.|++++ ..|++... -...|+.+..+..++..+ .|++++++|... +.++++.+... .-..+|
T Consensus 36 A~~La~aG~~V~-v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IV 112 (342)
T PRK12557 36 AIEFAEAGHDVV-LAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLPENAVI 112 (342)
T ss_pred HHHHHhCCCeEE-EEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCCCCCEE
Confidence 356777888864 66765410 012467777778777655 999999999988 77888766653 222344
Q ss_pred EecCCCChh
Q psy8894 117 CITEGIPQL 125 (306)
Q Consensus 117 i~t~Gf~e~ 125 (306)
+-++..+..
T Consensus 113 Id~ST~~~~ 121 (342)
T PRK12557 113 CNTCTVSPV 121 (342)
T ss_pred EEecCCCHH
Confidence 433333333
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=0.63 Score=46.12 Aligned_cols=65 Identities=22% Similarity=0.218 Sum_probs=40.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCceecCee----------------ccCCHHhhhhcCCCcE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTHLDLP----------------VFNTVKEARDATGAEA 90 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i~Gip----------------~y~sl~el~~~~~iDl 90 (306)
.|++|+|+|. |.+|.....++.+ +++++ ++|.+. ...-..|.. .+.+-.+... +.|+
T Consensus 5 ~~mkI~vIGl-GyvGlpmA~~la~-~~~V~-g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~--~adv 79 (425)
T PRK15182 5 DEVKIAIIGL-GYVGLPLAVEFGK-SRQVV-GFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIK--ECNF 79 (425)
T ss_pred CCCeEEEECc-CcchHHHHHHHhc-CCEEE-EEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHc--CCCE
Confidence 4688999999 9999877777665 68876 554432 100011221 2222223333 3899
Q ss_pred EEEecCch
Q psy8894 91 TVIYVPPP 98 (306)
Q Consensus 91 avi~vp~~ 98 (306)
+++|+|..
T Consensus 80 vii~Vptp 87 (425)
T PRK15182 80 YIITVPTP 87 (425)
T ss_pred EEEEcCCC
Confidence 99999965
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.96 Score=40.97 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=69.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh------------hhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA------------RDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el------------~~~~~iDlavi~vp~ 97 (306)
..+|+|+|+ |-.|..+.++|...|..-+..||+......-.+-..+.+-+++ ..+..+|+-|-..+.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 478999999 8899999999999999866688887532111111122111111 111246776665444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
....+.+++.. .+...|+..+..+ +...++.++|+++++.++.-.+.|+.
T Consensus 106 ~~~~~~~~~~l-~~~D~Vid~~d~~---~~r~~l~~~~~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 106 RLSEENIDEVL-KGVDVIVDCLDNF---ETRYLLDDYAHKKGIPLVHGAVEGTY 155 (231)
T ss_pred cCCHHHHHHHH-hcCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEeeccCE
Confidence 33344455544 3577665433332 22334456899999988876666554
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=1.1 Score=43.15 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee-ccC------------CHHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP-VFN------------TVKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip-~y~------------sl~el~~~~~iDlavi~vp 96 (306)
.++|+|+|+ |..|....++|...|..-+..||+......-.+-. .|. ...+-..+..+++-|...+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 88999999999999997556899875221111111 111 0111111123566555555
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.+...+.++++++ +...|+..+..+ +...++.++|+++++.++--.+.|
T Consensus 103 ~~~~~~~~~~~~~-~~DlVid~~D~~---~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDVTVEELEELVK-EVDLIIDATDNF---DTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccCCHHHHHHHhc-CCCEEEEcCCCH---HHHHHHHHHHHHcCCCEEEEEecc
Confidence 4444555666653 577766544333 223344568899998777555554
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.55 Score=44.98 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCC--ceecC--eeccC-----CHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGG--KTHLD--LPVFN-----TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g--~~i~G--ip~y~-----sl~el~~~~~iDlavi~vp~ 97 (306)
..+..+.|.||+|-.|+.+.+.+...|.+ .+++=|+..-. .+..| .++|+ .++++.+. .++++=|+-|
T Consensus 4 e~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~--~~VVlncvGP 81 (382)
T COG3268 4 EREYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASR--TQVVLNCVGP 81 (382)
T ss_pred CcceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhc--ceEEEecccc
Confidence 35678999999999999999999998877 44443332100 00112 23444 25566555 8999999988
Q ss_pred h--hHHHHHHHHHHcCCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 98 P--GAAKAIHEALDAEMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 98 ~--~~~~~~~e~~~~Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
- ....+++.|+..|.+.+=+ |.=+.- +.+..+..+.|++.|++|+ +|-||=+
T Consensus 82 yt~~g~plv~aC~~~GTdY~Di-TGEi~~fe~~i~~yh~~A~~~Ga~Ii--~~cGFDs 136 (382)
T COG3268 82 YTRYGEPLVAACAAAGTDYADI-TGEIMFFENSIDLYHAQAADAGARII--PGCGFDS 136 (382)
T ss_pred ccccccHHHHHHHHhCCCeeec-cccHHHHHHHHHHHHHHHHhcCCEEe--ccCCCCc
Confidence 4 4577999999999999775 432111 1123332345889999998 4456654
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.61 Score=43.10 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-------CCCCC-cee---------cC--eecc----C-----CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-------PGKGG-KTH---------LD--LPVF----N-----TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-------P~~~g-~~i---------~G--ip~y----~-----sl~ 80 (306)
+.++|+|.|. |+.|+...+.|.+.|.++++.-| |..-- +++ .+ +.-| + +-+
T Consensus 37 ~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~ 115 (254)
T cd05313 37 KGKRVAISGS-GNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGK 115 (254)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCc
Confidence 4579999999 99999999999999999987644 33100 000 01 0111 1 112
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC----CceecC
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC----PGIIAP 153 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc----~Gi~~~ 153 (306)
++.. .++|+.+-| +...-..+.++...+.+++.|+=.+-|....+..+ +.+++|+.++ |.. -|++..
T Consensus 116 ~~~~-~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~----~L~~rGI~vv-PD~laNaGGVivs 187 (254)
T cd05313 116 KPWE-VPCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIE----VFRQAGVLFA-PGKAANAGGVAVS 187 (254)
T ss_pred chhc-CCCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHH----HHHHCCcEEE-CchhhcCCCeeee
Confidence 2222 247777765 33344455666666668887664444443333332 4477898776 754 466654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.81 Score=42.28 Aligned_cols=88 Identities=22% Similarity=0.281 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec--Ceecc-------CCHHhhhhcCCCcEEEEecCc----
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DLPVF-------NTVKEARDATGAEATVIYVPP---- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~--Gip~y-------~sl~el~~~~~iDlavi~vp~---- 97 (306)
++|.|.|++|-.|+...+.|.+.|+++++............ ++..+ .++.++.+. +|+++-+...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~--~d~vi~~a~~~~~~ 78 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAG--CRALFHVAADYRLW 78 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhC--CCEEEEeceecccC
Confidence 36999999999999999999999999764432211001111 22221 234444444 8988866532
Q ss_pred ------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.....+++.|.+.+++.++..++
T Consensus 79 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 113 (328)
T TIGR03466 79 APDPEEMYAANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11244567777888988776665
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.27 Score=49.87 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------ecC-------------eeccCCHHh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------HLD-------------LPVFNTVKE 81 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------i~G-------------ip~y~sl~e 81 (306)
+.++|+|||+ |.||.-....+.+.|++++ ..|++...-+ -.| +....++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 83 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD 83 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH
Confidence 4578999999 9999998889999999975 5555431000 012 455567777
Q ss_pred hhhcCCCcEEEEecCchhHHH--HHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 82 ARDATGAEATVIYVPPPGAAK--AIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~~~~--~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
+. +.|++|-++|.+...+ ++.++.+. .-..++. =|+.++.++
T Consensus 84 ~~---~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~ 129 (507)
T PRK08268 84 LA---DCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITA 129 (507)
T ss_pred hC---CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 64 3899999998866543 23444332 2233332 255555443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.85 Score=40.31 Aligned_cols=117 Identities=13% Similarity=0.124 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee-ccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP-VFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip-~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|.|+|+ |..|....++|...|..-+..+|+......-.+-. .|. .+.+-..+..||+-+-+.+..
T Consensus 21 ~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 21 SARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred hCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 478999999 66999999999999998667888875322111111 111 111112223477766544332
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
.. +..++.. .+...+++ +.. +.+ ....+.++|+++++.++-..+.|+.-
T Consensus 100 ~~-~~~~~~~-~~~dvVi~-~~~-~~~-~~~~ln~~c~~~~ip~i~~~~~G~~G 148 (197)
T cd01492 100 IS-EKPEEFF-SQFDVVVA-TEL-SRA-ELVKINELCRKLGVKFYATGVHGLFG 148 (197)
T ss_pred cc-ccHHHHH-hCCCEEEE-CCC-CHH-HHHHHHHHHHHcCCCEEEEEecCCEE
Confidence 22 2222222 45675553 433 222 23334568999999888777776553
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.94 Score=42.37 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=53.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-------ecC--eecc-CC------HHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-------HLD--LPVF-NT------VKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-------i~G--ip~y-~s------l~el~~~~~iDlavi~ 94 (306)
++|.|+|++|-.|+...+.|.+.|++++........... ..+ ...+ .+ +.++....++|++|-+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 369999999999999999999999997743221110010 001 1111 12 3333332358998876
Q ss_pred cCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.... ....+++.|.+.|++.++.+++
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 124 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSS 124 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 4210 2345667777789988776565
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.96 Score=42.99 Aligned_cols=90 Identities=23% Similarity=0.303 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCC-c---eec----Ceec-------cCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGG-K---THL----DLPV-------FNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g-~---~i~----Gip~-------y~sl~el~~~~~iDlav 92 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++.+. +.... . +.. .+.. ..+++++... +|.++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDG--CDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhc--CCEEE
Confidence 3468999999999999999999999999765432 21100 0 000 1111 1234444443 89888
Q ss_pred EecCc-------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 93 IYVPP-------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 93 i~vp~-------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
-+..+ ..+..+++.|.+.|++.++..++
T Consensus 87 h~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 87 HTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 76532 12455678888889988776654
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.2 Score=41.95 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-------e-----ecCeecc-------CCHHhhhhcCCCcE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-------T-----HLDLPVF-------NTVKEARDATGAEA 90 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-------~-----i~Gip~y-------~sl~el~~~~~iDl 90 (306)
.++|.|.|++|-.|+...+.|.+.|++++.......... . -.++..+ .++.++.+..++|.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d~ 84 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDA 84 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCCE
Confidence 468999999999999999999999999774422110000 0 0011211 12333333235899
Q ss_pred EEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 91 TVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 91 avi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++-+... .....+++.|.+.|++.++.+++
T Consensus 85 vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 132 (352)
T PLN02240 85 VIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSS 132 (352)
T ss_pred EEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 8876532 12335667777788887776554
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.65 Score=42.33 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=52.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-------------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP------------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~------------- 98 (306)
+|.|+|++|-.|+...+.|++.|++++ +++... .++.-..++.++.+..++|.++-+....
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~-~~~r~~-----~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 74 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVV-ALTSSQ-----LDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAF 74 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEE-EeCCcc-----cCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHH
Confidence 589999999999999999999999976 444331 1222233455555443479998765321
Q ss_pred -----hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -----GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -----~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+.+. +.+++
T Consensus 75 ~~n~~~~~~l~~~~~~~~~~~-v~~Ss 100 (287)
T TIGR01214 75 AVNALAPQNLARAAARHGARL-VHIST 100 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCeE-EEEee
Confidence 1344556666777754 44454
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=91.86 E-value=1 Score=39.93 Aligned_cols=115 Identities=13% Similarity=0.082 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|+|+ |..|....++|...|+.-+..+|+.....+-.+- ..|. .+.+-..+..+++-+-..+..
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 99 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER 99 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence 578999999 9999999999999999755688887422111111 1111 111111222355555544444
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++.. .+...|+. +..-. .....+.++|+++++.++-..+.|
T Consensus 100 i~~~~~~~~~-~~~D~Vi~-~~d~~--~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 100 VTAENLELLI-NNVDLVLD-CTDNF--ATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred CCHHHHHHHH-hCCCEEEE-CCCCH--HHHHHHHHHHHHcCCCEEEEEecc
Confidence 3334444444 35676554 33221 223344467888888777555444
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.28 Score=45.89 Aligned_cols=93 Identities=16% Similarity=0.128 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---------------------------ecCeeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---------------------------HLDLPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---------------------------i~Gip~y~sl~el 82 (306)
.++|+|+|+ |.||.-....+...|++++ ..|+.....+ ...+....+++++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~ 82 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGDF 82 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHHh
Confidence 358999999 9999988888888899965 4443321000 0122355667554
Q ss_pred hhcCCCcEEEEecCchhHHH--HHHHHHHc--CCCEEEE-ecCCCChhHH
Q psy8894 83 RDATGAEATVIYVPPPGAAK--AIHEALDA--EMPLIVC-ITEGIPQLDM 127 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~~~--~~~e~~~~--Gi~~vvi-~t~Gf~e~~~ 127 (306)
. +.|+++-++|.+...+ +..++.+. .-..++. -|++++..+.
T Consensus 83 -~--~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~l 129 (286)
T PRK07819 83 -A--DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKL 129 (286)
T ss_pred -C--CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 3 3899999998765533 33333332 1223333 3556665543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=91.70 E-value=4 Score=42.54 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC--c------eecCeecc-CC------HHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG--K------THLDLPVF-NT------VKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g--~------~i~Gip~y-~s------l~el~~~~~iDla 91 (306)
++++|.|.|++|-.|+...+.|.+. ++++++........ . ...++..+ .+ +.++....++|++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V 84 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI 84 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence 4689999999999999999988876 67876432211000 0 01122222 12 3333322359998
Q ss_pred EEecCch------------------hHHHHHHHHHHcC-CCEEEEecC
Q psy8894 92 VIYVPPP------------------GAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 92 vi~vp~~------------------~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
|-+.... .+..+++.|.+.| ++.++.+++
T Consensus 85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 8654321 1234567777777 887776665
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.2 Score=46.95 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=55.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-C-----CHHhhhhcCCCcEEEEecCch-------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-N-----TVKEARDATGAEATVIYVPPP------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-~-----sl~el~~~~~iDlavi~vp~~------- 98 (306)
+|.|.|++|-.|+...+.|.+.|+++++..+... .....++..+ . .+.++.. ++|.++-+.+..
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~-~~~~~~ve~v~~Dl~d~~l~~al~--~~D~VIHLAa~~~~~~~~v 78 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPH-DALDPRVDYVCASLRNPVLQELAG--EADAVIHLAPVDTSAPGGV 78 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChh-hcccCCceEEEccCCCHHHHHHhc--CCCEEEEcCccCccchhhH
Confidence 7999999999999999999999999876544221 0000122111 1 2334433 389999887632
Q ss_pred ---hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 99 ---GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 99 ---~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.+..+++.|.+.|++ ++.+++.
T Consensus 79 Nv~Gt~nLleAA~~~GvR-iV~~SS~ 103 (699)
T PRK12320 79 GITGLAHVANAAARAGAR-LLFVSQA 103 (699)
T ss_pred HHHHHHHHHHHHHHcCCe-EEEEECC
Confidence 244577888889997 4545554
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.59 Score=45.85 Aligned_cols=85 Identities=14% Similarity=0.076 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-----------CC--------------CCc--eecC--eeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-----------GK--------------GGK--THLD--LPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-----------~~--------------~g~--~i~G--ip~y~- 77 (306)
.+|+|.|+ |+.|+...+.+.+. .++++ .||. ++ .++ .+.| ++++.
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv-aINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~ 138 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV-AINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSD 138 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE-EEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEc
Confidence 68999999 99999999988765 34565 3443 11 011 1233 33443
Q ss_pred -CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 -TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 -sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 139 ~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~i 180 (395)
T PLN03096 139 RNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLI 180 (395)
T ss_pred CCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEe
Confidence 4677763 236999999999999999999999999998876
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=5.9 Score=37.35 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
++|.|.|++|-.|+...+.|.+.|++++..++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~ 33 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVD 33 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEe
Confidence 57999999999999999999999987554444
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.2 Score=40.47 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=51.0
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCcee--cCeecc--CCHHhhhhcCCCcEEEEecCch---------
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKTH--LDLPVF--NTVKEARDATGAEATVIYVPPP--------- 98 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~i--~Gip~y--~sl~el~~~~~iDlavi~vp~~--------- 98 (306)
|.|.|++|-.|+...+.|.+.|+++++... +... ... .++..+ ..+.+... ++|.++-+....
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~D~Vvh~a~~~~~~~~~~~~ 77 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAG-ANTKWEGYKPWAPLAESEALE--GADAVINLAGEPIADKRWTEE 77 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCC-CcccceeeecccccchhhhcC--CCCEEEECCCCCcccccCCHH
Confidence 579999999999999999999999875432 2210 111 111111 12222222 489988766321
Q ss_pred -----------hHHHHHHHHHHcCCC-EEEEecC
Q psy8894 99 -----------GAAKAIHEALDAEMP-LIVCITE 120 (306)
Q Consensus 99 -----------~~~~~~~e~~~~Gi~-~vvi~t~ 120 (306)
.+..+++.|.+.|++ .+++.++
T Consensus 78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S 111 (292)
T TIGR01777 78 RKQEIRDSRIDTTRALVEAIAAAEQKPKVFISAS 111 (292)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCCCceEEEEee
Confidence 145667778888884 4555443
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.4 Score=37.17 Aligned_cols=88 Identities=14% Similarity=0.199 Sum_probs=54.8
Q ss_pred hHHHHHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch----hHHHHHHHHHHcCCCEEEEe
Q psy8894 44 TFHSKQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP----GAAKAIHEALDAEMPLIVCI 118 (306)
Q Consensus 44 ~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~----~~~~~~~e~~~~Gi~~vvi~ 118 (306)
+...+.|++.||+++++ ..... +|+ +..+.+ +++|++.+|.-.. .++++++.|.+.|...+.++
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp--~e~--------v~aA~~-~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~ 98 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTP--EEA--------VRAAVE-EDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVV 98 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCH--HHH--------HHHHHh-cCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEe
Confidence 34456777789997632 22111 111 223323 3699999986554 45667788888999998866
Q ss_pred cCCC-ChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 119 TEGI-PQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 119 t~Gf-~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
..|. +.++.+ .-+++|+ ++.+|.+
T Consensus 99 ~GGvip~~d~~-----~l~~~G~~~if~pgt 124 (143)
T COG2185 99 VGGVIPPGDYQ-----ELKEMGVDRIFGPGT 124 (143)
T ss_pred ecCccCchhHH-----HHHHhCcceeeCCCC
Confidence 6665 333322 2367887 8888865
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.8 Score=38.76 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 34689999999999999999999999997654
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.19 Score=41.58 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecC--e--eccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLD--L--PVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~G--i--p~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.+++.|+|+ |.+++.+...|.+.|++-+..+|++... + +..+ + --|.++.+...+ .|++|-++|...
T Consensus 11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-SSTTS
T ss_pred CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEecCCCC
Confidence 3689999999 9999999999999999966789987411 0 1111 1 123344444444 899999988765
Q ss_pred HHHHHHHHHHcC
Q psy8894 100 AAKAIHEALDAE 111 (306)
Q Consensus 100 ~~~~~~e~~~~G 111 (306)
. .+-++.++..
T Consensus 88 ~-~i~~~~~~~~ 98 (135)
T PF01488_consen 88 P-IITEEMLKKA 98 (135)
T ss_dssp T-SSTHHHHTTT
T ss_pred c-ccCHHHHHHH
Confidence 4 3334444444
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.6 Score=41.11 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|...|..-+..+|.......-..-.++.+.+++ ..+..|++=|...+..
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 578999999 8899999999999999866688876532211111121111111 1122355555555544
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc------eecCccc-cccCCCC--CCCC--
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG------IIAPEQC-KIGIMPG--HIHQ-- 167 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G------i~~~~~~-~~~~~~~--~~~~-- 167 (306)
...+.+++.++ +...|+-.+..|+ -+...++.+.|+++++.++...+.| ++.|... .-..++. ..++
T Consensus 106 l~~~n~~~ll~-~~DlVvD~~D~~~-~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~~p~~~~~f~~~~~~~~~~ 183 (287)
T PRK08223 106 IGKENADAFLD-GVDVYVDGLDFFE-FDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPGGMSFDDYFDLSDGMNEVE 183 (287)
T ss_pred cCccCHHHHHh-CCCEEEECCCCCc-HHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCCCCchhhhcCCCCCCCchh
Confidence 44555555553 5676654333332 1233444567899998877766554 3333211 0111221 0122
Q ss_pred ------CCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhc
Q psy8894 168 ------RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLK 220 (306)
Q Consensus 168 ------~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~ 220 (306)
+|.+.-.+++|-++..-. +-..++-|.+..+..|-- ..+-..|.+..+..
T Consensus 184 ~~~~~~~~~~p~c~~~gvl~~~~~-~~~~~~~~p~~g~~~g~~--g~~~a~E~ik~l~g 239 (287)
T PRK08223 184 KAVRFLAGLAPSMLHRGYLADPSR-VDLENRTGPSTGLACQLC--AGVVATEVLKILLG 239 (287)
T ss_pred hhcccCCcCCCccccCCccccccc-cccccccCCCccchHHHH--HHHHHHHHHHHHhC
Confidence 466666677777732211 112344455554444432 33456677777754
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=91.14 E-value=2.8 Score=40.16 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=49.1
Q ss_pred HHHHHHcCCeEEEeeCCCCC--Cc------eecCeeccCCHHhhhhcCCCcEEEEecCchhH-HHHHHHHHHc-CCCEEE
Q psy8894 47 SKQAIEYGTKVVGGVSPGKG--GK------THLDLPVFNTVKEARDATGAEATVIYVPPPGA-AKAIHEALDA-EMPLIV 116 (306)
Q Consensus 47 ~~~l~~~g~~vv~~VnP~~~--g~------~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~-~~~~~e~~~~-Gi~~vv 116 (306)
.++|.+.||++. ..|++.. .+ .-.|....++..++.+. .|++++++|.... .++++.+.+. .-..+|
T Consensus 36 ArnLlkAGheV~-V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIV 112 (341)
T TIGR01724 36 AIEFAMAGHDVV-LAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVPENAVI 112 (341)
T ss_pred HHHHHHCCCEEE-EEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCCCCCEE
Confidence 568888899964 5554321 01 12478888899999876 9999999998775 4665655543 223355
Q ss_pred EecCCCChhHH
Q psy8894 117 CITEGIPQLDM 127 (306)
Q Consensus 117 i~t~Gf~e~~~ 127 (306)
|-++=.+.+..
T Consensus 113 ID~STIsP~t~ 123 (341)
T TIGR01724 113 CNTCTVSPVVL 123 (341)
T ss_pred EECCCCCHHHH
Confidence 43433344443
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.6 Score=34.74 Aligned_cols=115 Identities=12% Similarity=0.122 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-----------CHHhhhhcCCCcEEEEecCchhH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-----------TVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-----------sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+|.|+|+ |..|....++|...|+.-+..+|+......-.+-..|- .+.+...+..|++-+-..+....
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 5899999 99999999999999997556888875322111111111 12222222234555444433322
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
.....+.. .+...++. +... .+ ....+.++|+++++.++...+.|+.
T Consensus 80 ~~~~~~~~-~~~diVi~-~~d~-~~-~~~~l~~~~~~~~i~~i~~~~~g~~ 126 (143)
T cd01483 80 EDNLDDFL-DGVDLVID-AIDN-IA-VRRALNRACKELGIPVIDAGGLGLG 126 (143)
T ss_pred hhhHHHHh-cCCCEEEE-CCCC-HH-HHHHHHHHHHHcCCCEEEEcCCCcE
Confidence 22222222 35665443 4332 22 2333446789999988887777643
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.89 Score=40.38 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+.++|.|||+ |++|..-.+.|.+.|.++. .|+|..
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~-VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIV-VISPEL 43 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 4579999999 8888777889999998765 788864
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.3 Score=40.67 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Cc---eec---CeeccC-------CHHhhhhcCCCcEEEEecCc
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GK---THL---DLPVFN-------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~---~i~---Gip~y~-------sl~el~~~~~iDlavi~vp~ 97 (306)
+|.|+|++|..|+...+.|.+.|++++..-.+... .. .+. ++..+. +++++....++|.++.+...
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 58899999999999999999999997633221110 00 111 122221 23333332358998866532
Q ss_pred ------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.+++.++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss 121 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSS 121 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecc
Confidence 12345667777888887776554
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.33 Score=46.18 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-e-------ecCe--eccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-T-------HLDL--PVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-~-------i~Gi--p~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.+++++|+|+ |.+++.....+.. .+++.+..+|+..... + ..++ ..|.+++++..+ .|+++.+||.
T Consensus 126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDiVi~aT~s 202 (325)
T PRK08618 126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE--ADIIVTVTNA 202 (325)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEccCC
Confidence 4688999999 9999988876654 4888777888764211 1 1133 457788888765 9999999997
Q ss_pred hhHHHHHHHHHHcCCCEEEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi 117 (306)
. .+-.- ++++.|.+..-+
T Consensus 203 ~-~p~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAV 220 (325)
T ss_pred C-CcchH-HhcCCCcEEEec
Confidence 6 44444 888889885554
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.85 E-value=14 Score=35.45 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
.+.++|.|.|++|-.|+...+.|.+.|++++..+.
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeC
Confidence 33678999999999999999999999999765443
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.72 E-value=4.7 Score=38.15 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC------CCcee---cCeeccC----CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK------GGKTH---LDLPVFN----TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~------~g~~i---~Gip~y~----sl~el~~~~~iDlavi~vp~ 97 (306)
++|.|+|+ |-+|.+..-.|.+.|..+...+.+++ .|-.+ .+.+.++ .-.+... .+|++++++-+
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~--~~Dlviv~vKa 77 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALG--PADLVIVTVKA 77 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcC--CCCEEEEEecc
Confidence 48999999 99999888788888843443344432 11111 1200111 1112222 39999999999
Q ss_pred hhHHHHHHHHHHc-C-CCEEEEecCCCChhH
Q psy8894 98 PGAAKAIHEALDA-E-MPLIVCITEGIPQLD 126 (306)
Q Consensus 98 ~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e~~ 126 (306)
....++++..... + -..|++++-|..-.+
T Consensus 78 ~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 78 YQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred ccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 9999999988875 2 334677888986444
|
|
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.85 Score=43.79 Aligned_cols=248 Identities=16% Similarity=0.134 Sum_probs=125.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH----c-CCe---EEEe---------------eCCCCCCce-e------cCeeccC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE----Y-GTK---VVGG---------------VSPGKGGKT-H------LDLPVFN 77 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~----~-g~~---vv~~---------------VnP~~~g~~-i------~Gip~y~ 77 (306)
..|.+|++||. |+=|+...+.+.+ + -|+ ..|. +|-++..-+ + ..+.+.+
T Consensus 19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~ 97 (372)
T KOG2711|consen 19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP 97 (372)
T ss_pred cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence 44789999998 9999887654433 2 111 1111 221110000 1 1345566
Q ss_pred CHHhhhhcCCCcEEEEecCchhHHHHHHHHHH---cCCCEEEEecCCCCh--hH--HHHHHHHHHHhcCC---eEEccCC
Q psy8894 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALD---AEMPLIVCITEGIPQ--LD--MVKVKHRLIRQSKS---RLIGPNC 147 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~---~Gi~~vvi~t~Gf~e--~~--~~~~~~~~ar~~gi---~iiGPNc 147 (306)
++.+...+ .|+.|..+|......+++++.. .++.+|= ++-||.- ++ ..-+-+-+-++.|+ -+.|||-
T Consensus 98 dl~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~~~~aIS-L~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNi 174 (372)
T KOG2711|consen 98 DLVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKPGATAIS-LIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANI 174 (372)
T ss_pred hHHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCCCCeEEE-eecceeccCCCCceeehHHHHHHHhCCCceeecCCch
Confidence 77777654 9999999999999999998875 4677644 5778852 22 11111123456665 6778886
Q ss_pred CceecCcc---ccccCCCCCC--------CCCCCEEEEecChhhHHHHHHHHH---hCCCceEEEEecCCCC---CCCCC
Q psy8894 148 PGIIAPEQ---CKIGIMPGHI--------HQRGCVGVVSRSGTLTYEAVHQTT---QVGLGQTLCVGIGGDP---FNGTN 210 (306)
Q Consensus 148 ~Gi~~~~~---~~~~~~~~~~--------~~~G~va~vSqSG~~~~~~~~~~~---~~g~g~s~~vs~Gn~~---~~dv~ 210 (306)
..=+.... ..++..+... ...-..-++-++-.-+.++...+. .-+-||.-....||.. +.-..
T Consensus 175 A~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~G 254 (372)
T KOG2711|consen 175 ASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLG 254 (372)
T ss_pred HHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhh
Confidence 43222111 1222221100 111134455555555555544332 4566888888888761 11122
Q ss_pred HHHH---HHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHH
Q psy8894 211 FIDC---LEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKID 276 (306)
Q Consensus 211 ~~d~---l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a 276 (306)
+.+. .++|-.-.... .|.|+-+ +.++--....|.|.+-.-.-+-.--|-.+ .+..+....-+
T Consensus 255 l~Em~~F~~~f~p~~~~~---t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq~~-QG~~Ta~~Vy~ 330 (372)
T KOG2711|consen 255 LLEMIKFATHFYPGSKPT---TFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQKL-QGPATAKEVYE 330 (372)
T ss_pred HHHHHHHHHHhCCCCCcc---eeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCCcc-cCcHHHHHHHH
Confidence 3333 33333332222 2677744 22222334445554211000100111111 11235666778
Q ss_pred HHHHcCC
Q psy8894 277 ALEKAGV 283 (306)
Q Consensus 277 ~~~~aGv 283 (306)
+|++.|.
T Consensus 331 ~L~~~~l 337 (372)
T KOG2711|consen 331 LLQKKGL 337 (372)
T ss_pred HHHHcCh
Confidence 9999998
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.51 Score=46.20 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=54.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHH-HcCCeEEEeeCCCCCCc-e----ecC------------eeccCCHHhhhhcCCCcE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAI-EYGTKVVGGVSPGKGGK-T----HLD------------LPVFNTVKEARDATGAEA 90 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~VnP~~~g~-~----i~G------------ip~y~sl~el~~~~~iDl 90 (306)
.-++|.|+|. |+.|+...+.+. .+|++++ ..||..... + ..| ...+.+++++..+ .|+
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDi 239 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADV 239 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCE
Confidence 3589999999 999999999885 7899976 667653100 0 111 1223589999876 999
Q ss_pred EEEecCc-hhHHHHH--HHHHHcCCCEEE
Q psy8894 91 TVIYVPP-PGAAKAI--HEALDAEMPLIV 116 (306)
Q Consensus 91 avi~vp~-~~~~~~~--~e~~~~Gi~~vv 116 (306)
+++.+|- +.+..++ +....++-.+++
T Consensus 240 V~lh~Plt~~T~~lin~~~l~~MK~ga~l 268 (386)
T PLN02306 240 ISLHPVLDKTTYHLINKERLALMKKEAVL 268 (386)
T ss_pred EEEeCCCChhhhhhcCHHHHHhCCCCeEE
Confidence 9998884 3344444 233334444444
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.6 Score=36.17 Aligned_cols=90 Identities=12% Similarity=0.090 Sum_probs=51.6
Q ss_pred ChHHH-HHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC----chhHHHHHHHHHHcCCCEEE
Q psy8894 43 GTFHS-KQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP----PPGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 43 G~~~~-~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp----~~~~~~~~~e~~~~Gi~~vv 116 (306)
|+... ..|+..||+++.. ++-. .-.-++.+.+ +++|++.+|.- .+..+++++++.+.|.+.+.
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s----------~e~~v~aa~e-~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~ 86 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQT----------PEEIARQAVE-ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL 86 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCC----------HHHHHHHHHH-cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCE
Confidence 44444 3555679997631 1111 1111333333 47999999853 45566777777777764444
Q ss_pred EecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 117 CITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 117 i~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
++..|...++..+ ..++.|+ ++++|.+
T Consensus 87 vivGG~~~~~~~~----~l~~~Gvd~~~~~gt 114 (132)
T TIGR00640 87 VVVGGVIPPQDFD----ELKEMGVAEIFGPGT 114 (132)
T ss_pred EEEeCCCChHhHH----HHHHCCCCEEECCCC
Confidence 4566643332221 2478898 8999887
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=90.27 E-value=2.1 Score=40.50 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---c----Cee-ccC------CHHhhhhcCCCcEEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---L----DLP-VFN------TVKEARDATGAEATVIY 94 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~----Gip-~y~------sl~el~~~~~iDlavi~ 94 (306)
.++|.|.|++|-.|+...+.|.+.|+++++. +.+... ... . .+. +.. ++.++.+..++|.+|-+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~ 82 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYGY-SLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL 82 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEEE-eCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence 4789999999999999999999999997743 322100 100 0 111 111 23344433358988866
Q ss_pred cCc------------------hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 95 VPP------------------PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 95 vp~------------------~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
... .....+++.|.+.+ ++.++.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 83 AAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred CcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 531 12345667776666 777776665
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=90.25 E-value=2 Score=41.31 Aligned_cols=115 Identities=17% Similarity=0.169 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH-------------hhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK-------------EARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~-------------el~~~~~iDlavi~vp 96 (306)
..+|+|+|+ |..|..+.++|...|..-+..||+......-..-..+-+-+ +...+..+++-+....
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 478999999 99999999999999997556888864221111111111111 1111123555554444
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
.....+.+++.+ .+...|+..+..+ +...++.++|++.++.++-..+.|
T Consensus 103 ~~~~~~~~~~~~-~~~DlVid~~Dn~---~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVTAEELEELV-TGVDLIIDATDNF---ETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCCHHHHHHHH-cCCCEEEEcCCCH---HHHHHHHHHHHHhCCCEEEEeeee
Confidence 444445555554 3467666443333 223344567888888776555544
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.8 Score=38.29 Aligned_cols=118 Identities=17% Similarity=0.132 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccCC------------HHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFNT------------VKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~s------------l~el~~~~~iDlavi~vp 96 (306)
..+|.|+|+ |-.|....++|...|..-+..+|....... +.....|.. +.+-..+..||+-|....
T Consensus 19 ~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVE 97 (198)
T ss_pred hCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 478999999 569999999999999986668887642211 111111211 111122224666555443
Q ss_pred chh--HHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 97 PPG--AAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 97 ~~~--~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
... ..+..++..+ ....|+ .+.. +.+ ....+.++|+++++.++-..|.|+.-
T Consensus 98 ~~~~~~~~~~~~~~~-~~dvVi-~~~d-~~~-~~~~ln~~c~~~~ip~i~~~~~G~~G 151 (198)
T cd01485 98 EDSLSNDSNIEEYLQ-KFTLVI-ATEE-NYE-RTAKVNDVCRKHHIPFISCATYGLIG 151 (198)
T ss_pred cccccchhhHHHHHh-CCCEEE-ECCC-CHH-HHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 222 1233333332 456544 3433 222 23334568999999888888877764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.64 Score=39.62 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+.++|.|+|. |+.|..-.+.|++.|.++. .|+|..
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~-VIsp~~ 46 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVT-VVSPEI 46 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEcCcc
Confidence 4588999999 8777777788899999875 678864
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=12 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
++|.|.|++|-.|+...+.|++.|.+.+..++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 36999999999999999999998876443444
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=0.91 Score=42.26 Aligned_cols=85 Identities=13% Similarity=0.079 Sum_probs=52.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-cCeeccCCHHhhhhcCCCcEEEEecCc----------h-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-LDLPVFNTVKEARDATGAEATVIYVPP----------P- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~----------~- 98 (306)
++|.|.|++|-.|+...+.|.+.| +++ .++... ..+ .++.-+..+.++.+..++|++|=+.-. +
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~-~~~~~~--~~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~ 76 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLI-ALDVHS--TDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEF 76 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEE-Eecccc--ccccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHH
Confidence 379999999999999999998888 655 444321 111 123333345555554358988854211 1
Q ss_pred -------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++. +.+|+
T Consensus 77 ~~~~N~~~~~~l~~aa~~~g~~~-v~~Ss 104 (299)
T PRK09987 77 AQLLNATSVEAIAKAANEVGAWV-VHYST 104 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeE-EEEcc
Confidence 1345777888889874 44565
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=90.01 E-value=2.4 Score=38.12 Aligned_cols=115 Identities=13% Similarity=0.075 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-eccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-PVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-p~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|+.-+..+|+.....+-.+- ..|. .+.+-..+..|++-+...+..
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 478999999 8899999999999999866688876522111111 1111 011111222466655555544
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++..+ +...|+. +..-.+ ....+.++|+++++.++--.+.|
T Consensus 100 i~~~~~~~~~~-~~DvVi~-~~d~~~--~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 LDAENAEELIA-GYDLVLD-CTDNFA--TRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred eCHHHHHHHHh-CCCEEEE-cCCCHH--HHHHHHHHHHHcCCCEEEEEecc
Confidence 43444444433 4675554 433222 23344567888888766544443
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=89.94 E-value=2.4 Score=38.75 Aligned_cols=115 Identities=13% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|..+.++|...|..-+..||+......-.+-..+-+ +.+-..+..|++-|...+.
T Consensus 31 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~ 109 (245)
T PRK05690 31 KAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINA 109 (245)
T ss_pred cCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEec
Confidence 3589999999 889999999999999875567887653221111111111 1111112235655555544
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
....+.+++..+ +...|+..+..+ +....+.++|+++++.++--.+.
T Consensus 110 ~i~~~~~~~~~~-~~DiVi~~~D~~---~~r~~ln~~~~~~~ip~v~~~~~ 156 (245)
T PRK05690 110 RLDDDELAALIA-GHDLVLDCTDNV---ATRNQLNRACFAAKKPLVSGAAI 156 (245)
T ss_pred cCCHHHHHHHHh-cCCEEEecCCCH---HHHHHHHHHHHHhCCEEEEeeec
Confidence 433444444433 466555433222 23344456788888877754444
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.3 Score=43.35 Aligned_cols=62 Identities=19% Similarity=0.127 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCcee-----------------cCeeccCC--HHhhhhcCCCcE
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTH-----------------LDLPVFNT--VKEARDATGAEA 90 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i-----------------~Gip~y~s--l~el~~~~~iDl 90 (306)
+|+|+|. |.+|......+. .|++++ ++|.+. ...-. .+.....+ .+++... .|+
T Consensus 2 kI~VIGl-GyvGl~~A~~lA-~G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~--ad~ 76 (388)
T PRK15057 2 KITISGT-GYVGLSNGLLIA-QNHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD--ADY 76 (388)
T ss_pred EEEEECC-CHHHHHHHHHHH-hCCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC--CCE
Confidence 6999999 999987765444 589876 554432 10000 11122122 4444443 999
Q ss_pred EEEecCch
Q psy8894 91 TVIYVPPP 98 (306)
Q Consensus 91 avi~vp~~ 98 (306)
+++++|..
T Consensus 77 vii~Vpt~ 84 (388)
T PRK15057 77 VIIATPTD 84 (388)
T ss_pred EEEeCCCC
Confidence 99999965
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.7 Score=41.63 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=60.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----------------ecCeeccCCHHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----------------HLDLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----------------i~Gip~y~sl~el~~~~~iDla 91 (306)
..++|.|.||||-.|+.+.+.|++.||++.+-|-.....+. ..++.-|.++++..+. +|.+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g--cdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG--CDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--CCEE
Confidence 45789999999999999999999999998876643221000 1234445566666654 7777
Q ss_pred EE-ecCc----------------hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 92 VI-YVPP----------------PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 92 vi-~vp~----------------~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
+= ..|. ..+..+++.|.+.. ||.++ +|+
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV-~TS 128 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVV-YTS 128 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEE-Eec
Confidence 63 2221 23456788888877 99987 565
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.14 Score=44.60 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=52.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---------------------------eecCeeccCCHHhhhh
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---------------------------THLDLPVFNTVKEARD 84 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---------------------------~i~Gip~y~sl~el~~ 84 (306)
+|+|+|+ |.||+.....+...|+++. .+|++.... ....+....+++++.
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 6999999 9999988888888899965 555543110 012455666777776
Q ss_pred cCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 85 ATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 85 ~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
. .|+++-++|.+.- .+++.++-+. .-..++. -|++++-.+
T Consensus 78 ~--adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~ 121 (180)
T PF02737_consen 78 D--ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISE 121 (180)
T ss_dssp T--ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH
T ss_pred h--hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHH
Confidence 3 8999999986543 3455555543 2333332 244555443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=1.5 Score=42.20 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc---e---------ecC--eeccC--CH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK---T---------HLD--LPVFN--TV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~---~---------i~G--ip~y~--sl 79 (306)
.||+|-|+ |+.|+.+.+.+.+. ++++++.-||... |. + +.| +++|. +.
T Consensus 3 ~ki~INGf-GRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp 81 (337)
T PTZ00023 3 VKLGINGF-GRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDP 81 (337)
T ss_pred eEEEEECc-ChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCCh
Confidence 48999999 99999999986644 7888855443210 10 1 233 34553 57
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+++|= +.++|+++.|+......+.+...++.|.+.|++ |.
T Consensus 82 ~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~i-Sa 122 (337)
T PTZ00023 82 AAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIM-SA 122 (337)
T ss_pred hhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEe-CC
Confidence 88873 246999999999999999999999999998775 54
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.82 E-value=3.6 Score=39.49 Aligned_cols=110 Identities=17% Similarity=0.053 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--------cCC--eEEEeeCCCCCCc-eecCee---ccCCH-----HhhhhcCCCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--------YGT--KVVGGVSPGKGGK-THLDLP---VFNTV-----KEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--------~g~--~vv~~VnP~~~g~-~i~Gip---~y~sl-----~el~~~~~iD 89 (306)
+..+|+|+|. |..|+...+.+++ .|. ++++..+.+..-. .+.+.+ ...+. .++....++|
T Consensus 2 ~~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (333)
T COG0460 2 KTVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDID 80 (333)
T ss_pred ceEEEEEEcc-CchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCC
Confidence 4578999999 9999987665443 234 4665566543111 122222 22233 3444434688
Q ss_pred EEEEecCc--hhH--HHHHHHHHHcCCCEEEEecCCCCh-hH-HHHHHHHHHHhcCCeEE
Q psy8894 90 ATVIYVPP--PGA--AKAIHEALDAEMPLIVCITEGIPQ-LD-MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 90 lavi~vp~--~~~--~~~~~e~~~~Gi~~vvi~t~Gf~e-~~-~~~~~~~~ar~~gi~ii 143 (306)
++|-.++. +.. .+.+.+++++|.+. .|+.=.. .. -.++ .++|++.|..+.
T Consensus 81 vvve~~~~d~~~~~~~~~~~~al~~GkhV---VTaNK~~lA~~~~el-~~~A~~~g~~l~ 136 (333)
T COG0460 81 VVVELVGGDVEPAEPADLYLKALENGKHV---VTANKALLALHYHEL-REAAEKNGVKLL 136 (333)
T ss_pred EEEecCcccCCchhhHHHHHHHHHcCCeE---ECCCchHhHhhHHHH-HHHHHHhCCeEE
Confidence 88866555 333 48899999999984 2553211 11 1233 357888886554
|
|
| >PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) | Back alignment and domain information |
|---|
Probab=89.66 E-value=1.6 Score=35.09 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc------hhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP------PGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~------~~~~~~~ 104 (306)
++|.|+|- |-...-..+.+++.|++.+ .||.+. +.. -. +... .|-++..-+. -....++
T Consensus 3 kkvLIanr-Geia~r~~ra~r~~Gi~tv-~v~s~~--d~~-----s~---~~~~---ad~~~~~~~~~~~~~yl~~e~I~ 67 (110)
T PF00289_consen 3 KKVLIANR-GEIAVRIIRALRELGIETV-AVNSNP--DTV-----ST---HVDM---ADEAYFEPPGPSPESYLNIEAII 67 (110)
T ss_dssp SEEEESS--HHHHHHHHHHHHHTTSEEE-EEEEGG--GTT-----GH---HHHH---SSEEEEEESSSGGGTTTSHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHhCCcce-eccCch--hcc-----cc---cccc---cccceecCcchhhhhhccHHHHh
Confidence 67888886 5555555778888999976 444432 111 00 1111 3444322111 3456677
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+-+.+.|+..++ ---||-.+. .++. +.+++.|+.++||+
T Consensus 68 ~ia~~~g~~~i~-pGyg~lse~-~~fa-~~~~~~gi~fiGp~ 106 (110)
T PF00289_consen 68 DIARKEGADAIH-PGYGFLSEN-AEFA-EACEDAGIIFIGPS 106 (110)
T ss_dssp HHHHHTTESEEE-STSSTTTTH-HHHH-HHHHHTT-EESSS-
T ss_pred hHhhhhcCcccc-cccchhHHH-HHHH-HHHHHCCCEEECcC
Confidence 777778888766 233442222 2222 35679999999997
|
CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.6 Score=43.02 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=49.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..-++|+|+|+ |+.|+.+.+.++.+|.+++.. +||...- ....|..+. +++++... .|++|.++....+..
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~--aDVVItaTG~~~vI~ 265 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKI--GDIFITATGNKDVIR 265 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhc--CCEEEECCCCHHHHH
Confidence 35679999999 999999999999999996532 5664310 012355444 46776654 899998887655433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.5 Score=39.62 Aligned_cols=84 Identities=23% Similarity=0.248 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCc---eecCeecc---CC----HHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGK---THLDLPVF---NT----VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~---~i~Gip~y---~s----l~el~~~~~iDlavi~vp~~ 98 (306)
++++|+|+ |+.|..+.+.|.+.|++++ .|+... ..+ +..+..++ .+ |.++.- .+.|+++.++..+
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv-~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi-~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVV-LIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI-DDADAVVAATGND 77 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceE-EEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC-CcCCEEEEeeCCC
Confidence 57999999 9999999999999999987 444332 101 11222222 22 555532 2599999999987
Q ss_pred hHHHHHHHHH-H-cCCCEEEE
Q psy8894 99 GAAKAIHEAL-D-AEMPLIVC 117 (306)
Q Consensus 99 ~~~~~~~e~~-~-~Gi~~vvi 117 (306)
..--++-.+. + .|++.+|.
T Consensus 78 ~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 7666554444 3 59999886
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=89.14 E-value=3.8 Score=34.17 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=53.5
Q ss_pred CChHHH-HHHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe----cCchhHHHHHHHHHHcCCCEE
Q psy8894 42 QGTFHS-KQAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----VPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 42 ~G~~~~-~~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----vp~~~~~~~~~e~~~~Gi~~v 115 (306)
.|+... ..|++.||+++.. ++-.. +++ ++.+.+ +++|++-+. ..-....++++++.+.|.+.+
T Consensus 16 iGk~iv~~~l~~~GfeVi~LG~~v~~--e~~--------v~aa~~-~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~ 84 (134)
T TIGR01501 16 VGNKILDHAFTNAGFNVVNLGVLSPQ--EEF--------IKAAIE-TKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGI 84 (134)
T ss_pred HhHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEecccccCHHHHHHHHHHHHHCCCCCC
Confidence 355444 3566679997732 22211 111 334433 479988764 233446677778888887544
Q ss_pred EEecCC---CChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 116 VCITEG---IPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 116 vi~t~G---f~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
.++-.| +++++..+.. +..++.|+ ++.||.+
T Consensus 85 ~vivGG~~vi~~~d~~~~~-~~l~~~Gv~~vF~pgt 119 (134)
T TIGR01501 85 LLYVGGNLVVGKQDFPDVE-KRFKEMGFDRVFAPGT 119 (134)
T ss_pred EEEecCCcCcChhhhHHHH-HHHHHcCCCEEECcCC
Confidence 444555 4555543322 23588887 7888876
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.7 Score=40.64 Aligned_cols=117 Identities=14% Similarity=0.058 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|....++|...|+.-+..||+......-.+-..+-+ ..+-..+..|++-|-..+.
T Consensus 27 ~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 3579999999 889999999999999986668887652211111111111 1111111235665555444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
....+.+.+.+ .+...|+..+..+ ....++.++|++.++.++--.+.|+
T Consensus 106 ~i~~~~~~~~~-~~~DvVvd~~d~~---~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 106 RLTWSNALDEL-RDADVILDGSDNF---DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred ecCHHHHHHHH-hCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 43333333433 3567655433333 2223344678888887775554444
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.12 E-value=2.3 Score=38.36 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVV 58 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv 58 (306)
+.+++.|.|+++..|+...+.|.+.|++++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~ 32 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVF 32 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence 346899999999999999999999999976
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=3 Score=39.83 Aligned_cols=95 Identities=16% Similarity=0.039 Sum_probs=57.1
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCC-CCc--eec------CeeccCC----HHhhhhcCCC
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGK-GGK--THL------DLPVFNT----VKEARDATGA 88 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~-~g~--~i~------Gip~y~s----l~el~~~~~i 88 (306)
+.-+++.++|+|+|+.|+.|+.....+...+ .+++ .+|... .+. ++. .+..+.+ .+++. +.
T Consensus 2 ~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elv-L~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~---ga 77 (321)
T PTZ00325 2 RPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELS-LYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR---GA 77 (321)
T ss_pred CCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEE-EEecCCCcccccchhhcCcCceEEEecCCCchHHHhC---CC
Confidence 3456778899999999999998876666444 3443 555321 121 110 1222212 23333 48
Q ss_pred cEEEEecCc--h--------------hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 89 EATVIYVPP--P--------------GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 89 Dlavi~vp~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
|++|++... . .+.++++.+.++|++.+++.++..
T Consensus 78 DvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP 127 (321)
T PTZ00325 78 DLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP 127 (321)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence 999986433 1 234466677788999998877653
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.63 Score=44.34 Aligned_cols=84 Identities=17% Similarity=0.116 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc-----ee---cC--eeccCCHHhhhhcCCCcEEEEecC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK-----TH---LD--LPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~-----~i---~G--ip~y~sl~el~~~~~iDlavi~vp 96 (306)
..+++++|+|+ |.+++.+.+.+... +++.+...|+..... ++ .| +.+|.+++++.+ .|+++.+||
T Consensus 127 ~~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTp 202 (326)
T PRK06046 127 KDSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTP 202 (326)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecC
Confidence 34789999999 99999998877754 788887888864211 11 24 456888988874 899999999
Q ss_pred chhHHHHH-HHHHHcCCCEEEE
Q psy8894 97 PPGAAKAI-HEALDAEMPLIVC 117 (306)
Q Consensus 97 ~~~~~~~~-~e~~~~Gi~~vvi 117 (306)
... +++ .+.++.|.+..-+
T Consensus 203 s~~--P~~~~~~l~~g~hV~~i 222 (326)
T PRK06046 203 SRK--PVVKAEWIKEGTHINAI 222 (326)
T ss_pred CCC--cEecHHHcCCCCEEEec
Confidence 754 333 4456777764333
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=89.00 E-value=6.7 Score=36.88 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=82.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-------hH-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-------GA- 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-------~~- 100 (306)
-++++|+|- ..-.....+.|.+.|+++. +...-.. .+..|..++++.+++.+. .|+++.-+|+. ..
T Consensus 2 ~~~~~v~gg-d~r~~~~~~~l~~~G~~v~~~g~~~~~--~~~~g~~~~~~~~~~~~~--ad~ii~~~p~~~~~~~i~~~~ 76 (296)
T PRK08306 2 GKHIAVIGG-DARQLELIRKLVELGAKVSLVGFDQLD--HGFTGATKSSSLEEALSD--VDVIILPVPGTNDEGNVDTVF 76 (296)
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeccccc--cccCCceeeccHHHHhcc--CCEEEECCccccCCceeeccc
Confidence 368999995 3334456789999999954 3332111 234588899888887765 89999887762 11
Q ss_pred -------HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce-----ecCccc---cc--cCCCC
Q psy8894 101 -------AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI-----IAPEQC---KI--GIMPG 163 (306)
Q Consensus 101 -------~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi-----~~~~~~---~~--~~~~~ 163 (306)
.+..-+....| .++ |. |+-..... +.++++|++++ +.+.. .|.... .+ .....
T Consensus 77 ~~~~~~~~~~~l~~l~~~--~~v-~~-G~~~~~~~----~~~~~~gi~~~--~~~~~~~~~~~ns~~~aegav~~a~~~~ 146 (296)
T PRK08306 77 SNEKLVLTEELLELTPEH--CTI-FS-GIANPYLK----ELAKETNRKLV--ELFERDDVAILNSIPTAEGAIMMAIEHT 146 (296)
T ss_pred cccCCcchHHHHHhcCCC--CEE-EE-ecCCHHHH----HHHHHCCCeEE--EEeccchhhhhccHhHHHHHHHHHHHhC
Confidence 12233334445 223 33 44333222 35789999886 33322 221110 00 00000
Q ss_pred CCCCCCCEEEEecChhhHHHHHHHHHhCCC
Q psy8894 164 HIHQRGCVGVVSRSGTLTYEAVHQTTQVGL 193 (306)
Q Consensus 164 ~~~~~G~va~vSqSG~~~~~~~~~~~~~g~ 193 (306)
.....|.-.+|--.|.++..+...+...|.
T Consensus 147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga 176 (296)
T PRK08306 147 PITIHGSNVLVLGFGRTGMTLARTLKALGA 176 (296)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHCCC
Confidence 112234444444568899999888877654
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.98 Score=44.32 Aligned_cols=77 Identities=16% Similarity=0.230 Sum_probs=52.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCe-----eccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDL-----PVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gi-----p~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++|.|+|. |..|....+.|++.|++++ +.|++. ....-. ......+.++.+ .|++|.+.+....-+.++
T Consensus 4 ~~i~iiGl-G~~G~slA~~l~~~G~~V~-g~D~~~--~~~~~~~~~~~~~~~~~~~~~~~--~dlvV~s~gi~~~~~~l~ 77 (418)
T PRK00683 4 QRVVVLGL-GVTGKSIARFLAQKGVYVI-GVDKSL--EALQSCPYIHERYLENAEEFPEQ--VDLVVRSPGIKKEHPWVQ 77 (418)
T ss_pred CeEEEEEE-CHHHHHHHHHHHHCCCEEE-EEeCCc--cccchhHHHhhhhcCCcHHHhcC--CCEEEECCCCCCCcHHHH
Confidence 57999999 9999888889999999865 677654 111100 111223333333 899888876666677788
Q ss_pred HHHHcCCC
Q psy8894 106 EALDAEMP 113 (306)
Q Consensus 106 e~~~~Gi~ 113 (306)
+|.++|++
T Consensus 78 ~A~~~g~~ 85 (418)
T PRK00683 78 AAIASHIP 85 (418)
T ss_pred HHHHCCCc
Confidence 88888876
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=88.90 E-value=3 Score=38.63 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.++|.|.|++|-.|+...+.|++.|++++..+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 46899999999999999999999999976544
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.87 E-value=5 Score=38.16 Aligned_cols=111 Identities=15% Similarity=0.275 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecC--eeccC-------CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLD--LPVFN-------TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~G--ip~y~-------sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|.|.|..|-.|+-....|++.|++++ .+|--..|. .+.- .+.|. -|+++.+++.||.++=|.....
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vv-V~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~ 79 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVV-VLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASIS 79 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEE-EEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECccccc
Confidence 4789999989999988899999999977 444322121 1221 23332 3677777778999997643332
Q ss_pred ------------------HHHHHHHHHHcCCCEEEEecC-----CCC------hhH--------------HHHHHHHHHH
Q psy8894 100 ------------------AAKAIHEALDAEMPLIVCITE-----GIP------QLD--------------MVKVKHRLIR 136 (306)
Q Consensus 100 ------------------~~~~~~e~~~~Gi~~vvi~t~-----Gf~------e~~--------------~~~~~~~~ar 136 (306)
+..+++.|.+.||+.++ ||+ |-+ |+. .+++++..++
T Consensus 80 VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~v-FSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~ 158 (329)
T COG1087 80 VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFI-FSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAK 158 (329)
T ss_pred cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEE-EecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHHHHHHHH
Confidence 34477889999999977 675 332 221 2556667778
Q ss_pred hcCCeEE
Q psy8894 137 QSKSRLI 143 (306)
Q Consensus 137 ~~gi~ii 143 (306)
..+++++
T Consensus 159 a~~~~~v 165 (329)
T COG1087 159 ANPFKVV 165 (329)
T ss_pred hCCCcEE
Confidence 8887655
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=88.83 E-value=8.5 Score=34.97 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|..-+..||+.....+-..-..|.. +.+-..+..|++-|...+..
T Consensus 11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeee
Confidence 468999999 889999999999999875557887642221111112211 11212223467777666655
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc-eecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG-IIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G-i~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
...+..++....+...|+. +..-.+. ...+.+.|+++++.++---..| -.+|... .|+=++++
T Consensus 90 i~~~~~~~l~~~~~D~Vvd-aiD~~~~--k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i-------------~i~di~~t 153 (231)
T cd00755 90 LTPDNSEDLLGGDPDFVVD-AIDSIRA--KVALIAYCRKRKIPVISSMGAGGKLDPTRI-------------RVADISKT 153 (231)
T ss_pred cCHhHHHHHhcCCCCEEEE-cCCCHHH--HHHHHHHHHHhCCCEEEEeCCcCCCCCCeE-------------EEccEecc
Confidence 5556667777667786654 4332221 2223457899998877532222 1223221 13333333
Q ss_pred h--hhHHHHHHHHHhCCC--ceEEEEecC
Q psy8894 178 G--TLTYEAVHQTTQVGL--GQTLCVGIG 202 (306)
Q Consensus 178 G--~~~~~~~~~~~~~g~--g~s~~vs~G 202 (306)
- .++..+-..++++|+ |+..+-|.=
T Consensus 154 ~~~pla~~~R~~Lrk~~~~~~~~~v~S~E 182 (231)
T cd00755 154 SGDPLARKVRKRLRKRGIFFGVPVVYSTE 182 (231)
T ss_pred ccCcHHHHHHHHHHHcCCCCCeEEEeCCC
Confidence 3 466667777888877 455555543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.68 E-value=5 Score=40.19 Aligned_cols=119 Identities=14% Similarity=0.195 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC-----CCc---ee---cCee-cc-CCHHhhhh-----------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK-----GGK---TH---LDLP-VF-NTVKEARD----------- 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~-----~g~---~i---~Gip-~y-~sl~el~~----------- 84 (306)
+.++|+|.|. |+.|....+.|.+.|.++++.-|.+. .|- ++ ..++ .. .++++.++
T Consensus 236 ~Gk~VaVqG~-GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~ 314 (454)
T PTZ00079 236 EGKTVVVSGS-GNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGK 314 (454)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCc
Confidence 4689999999 99999999999999999887644331 011 11 0000 00 11222211
Q ss_pred ---cCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceecC
Q psy8894 85 ---ATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIAP 153 (306)
Q Consensus 85 ---~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~~ 153 (306)
..++|+++-| +...-..+.++.+++.+++.|+=.+-+....+..+ +-+++|+.++ | |+-|++..
T Consensus 315 ~~~~~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~----~L~~~GI~~~-PD~~aNAGGV~vS 386 (454)
T PTZ00079 315 KPWEVPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH----LFKKNGVIFC-PGKAANAGGVAIS 386 (454)
T ss_pred CcccCCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH----HHHHCCcEEE-ChhhhcCCCeeee
Confidence 1247887765 44455567777787889997664444443333332 3467787665 6 44466654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=4.4 Score=38.57 Aligned_cols=88 Identities=13% Similarity=0.043 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCC---Cc--------eecC----eeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKG---GK--------THLD----LPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~---g~--------~i~G----ip~y~sl~el~~~~~iDlav 92 (306)
+.++|+|+|+ |.+|......+...|. + +..+|.+.. +. ...+ +....+.+++. +.|++|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~---~aDiVI 79 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIA---GSDVVI 79 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhC---CCCEEE
Confidence 3479999998 9999877666666675 5 446665431 10 0111 23335676664 389999
Q ss_pred EecCc---------------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 93 IYVPP---------------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 93 i~vp~---------------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++... +...++++++.+.+-+++++..+.
T Consensus 80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 96521 224566777777777765554543
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=88.54 E-value=3.1 Score=38.55 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.++|.|.|++|-.|+.+.+.|++.|+++++.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence 45799999999999999999999999987554
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=88.52 E-value=3.1 Score=37.93 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCH-----------HhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTV-----------KEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl-----------~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|....++|...|..-+..+|+......-.+-..|-+- .+...+..|++-|...+..
T Consensus 24 ~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~ 102 (240)
T TIGR02355 24 ASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK 102 (240)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc
Confidence 578999999 8899999999999998866688887632221111122111 1111122356655555443
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++..+ +...|+. +..- . +....+.++|+++++.++...+.|
T Consensus 103 i~~~~~~~~~~-~~DlVvd-~~D~-~-~~r~~ln~~~~~~~ip~v~~~~~g 149 (240)
T TIGR02355 103 LDDAELAALIA-EHDIVVD-CTDN-V-EVRNQLNRQCFAAKVPLVSGAAIR 149 (240)
T ss_pred CCHHHHHHHhh-cCCEEEE-cCCC-H-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 33344444432 4665553 3322 1 223344567888888777554443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=88.46 E-value=3.9 Score=33.85 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=53.7
Q ss_pred CChHHHH-HHHHcCCeEEEe-eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe----cCchhHHHHHHHHHHcCCCEE
Q psy8894 42 QGTFHSK-QAIEYGTKVVGG-VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----VPPPGAAKAIHEALDAEMPLI 115 (306)
Q Consensus 42 ~G~~~~~-~l~~~g~~vv~~-VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----vp~~~~~~~~~e~~~~Gi~~v 115 (306)
.|+.... .|+..||+++.. ++-.. +++ ++.+.+ +++|++-++ ..-....++++.+.+.|++.+
T Consensus 14 iGkniv~~~L~~~GfeVidLG~~v~~--e~~--------v~aa~~-~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v 82 (128)
T cd02072 14 VGNKILDHAFTEAGFNVVNLGVLSPQ--EEF--------IDAAIE-TDADAILVSSLYGHGEIDCKGLREKCDEAGLKDI 82 (128)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCH--HHH--------HHHHHH-cCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCC
Confidence 4555544 455579997732 22111 111 334433 479998775 333455777788888887444
Q ss_pred EEecCCC---ChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 116 VCITEGI---PQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 116 vi~t~Gf---~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
.++-.|. ++++.++.+ +..++.|+ ++.+|.+
T Consensus 83 ~vivGG~~~i~~~d~~~~~-~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 83 LLYVGGNLVVGKQDFEDVE-KRFKEMGFDRVFAPGT 117 (128)
T ss_pred eEEEECCCCCChhhhHHHH-HHHHHcCCCEEECcCC
Confidence 4445554 444433322 24588998 7888875
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=88.37 E-value=3 Score=39.17 Aligned_cols=115 Identities=17% Similarity=0.200 Sum_probs=69.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~~ 98 (306)
..+|.|+|+ |-.|....++|...|..-+..+|+.....+-.+-..|-+-+++ ..+..+++-|......
T Consensus 19 ~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 478999999 8889999999999999866789987632222222222222221 1112356665554433
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
...+.+ .....|+ .+.. +.+. ...+.++|++.++.++--.+.|+.-.
T Consensus 98 ~~~~~l-----~~fdvVV-~~~~-~~~~-~~~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 98 LTTDEL-----LKFQVVV-LTDA-SLED-QLKINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred CCHHHH-----hcCCEEE-EecC-CHHH-HHHHHHHHHHcCCEEEEEeccccEEE
Confidence 223322 2355444 4443 3333 23345689999999999888877653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=88.35 E-value=2.3 Score=38.53 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-------CCCC-cee-------cCeeccC-----CHHhhhhcCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-------GKGG-KTH-------LDLPVFN-----TVKEARDATGA 88 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-------~~~g-~~i-------~Gip~y~-----sl~el~~~~~i 88 (306)
+.++|+|+|. |+.|+...+.|.+.|.++++..|. +.-- +++ ..+.-|+ +-+++.. .++
T Consensus 30 ~~~~v~I~G~-G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~-~~~ 107 (227)
T cd01076 30 AGARVAIQGF-GNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE-LDC 107 (227)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee-ecc
Confidence 4689999998 999999999999999999876443 2100 010 0111121 1122222 257
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceec
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIA 152 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~ 152 (306)
|+.+-|.+....- -+.+-+..++.|+=.+-+.-..+.. ++.+++|+.++ |. +-|++.
T Consensus 108 Dvlip~a~~~~i~--~~~~~~l~a~~I~egAN~~~t~~a~----~~L~~rGi~~~-PD~~aNaGGvi~ 168 (227)
T cd01076 108 DILIPAALENQIT--ADNADRIKAKIIVEAANGPTTPEAD----EILHERGVLVV-PDILANAGGVTV 168 (227)
T ss_pred cEEEecCccCccC--HHHHhhceeeEEEeCCCCCCCHHHH----HHHHHCCCEEE-ChHHhcCcchhh
Confidence 8888887654442 2233334567554322222212222 23478887665 64 446665
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.6 Score=43.31 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=30.7
Q ss_pred cccC-CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 25 LRLT-SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 25 ~~~~-~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
+++. ++++|.|.|++|-.|+.+.+.|++.|+++++..
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 3444 358999999999999999999999999987543
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=88.23 E-value=8.8 Score=36.02 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
.++|.|.|++|-.|+...+.|.+.|++++..
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999997644
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.07 E-value=2.3 Score=42.17 Aligned_cols=86 Identities=21% Similarity=0.130 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCC---------c--------ee----------cC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGG---------K--------TH----------LD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g---------~--------~i----------~G--ip~y~--s 78 (306)
.+|+|.|. |+.|+...+.+.. .++++++.-||.... + ++ .| ++++. +
T Consensus 86 ~kvgInGF-GRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 86 TKIGINGF-GRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred eEEEEECc-CHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 49999999 9999999998775 588988654453210 0 11 12 23331 4
Q ss_pred HHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++-. .++|+++.++......+.+...++.|.|.++|
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVI 204 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVI 204 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEE
Confidence 5555532 36999999999988888899999999998886
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=88.06 E-value=1.1 Score=38.66 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQ-GTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~-G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.++|.|+|+ |.+ |+...+.|.+.|.++ ..+|.+. +++.+...+ .|++|.+++...
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~~V-~v~~r~~-----------~~l~~~l~~--aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNATV-TVCHSKT-----------KNLKEHTKQ--ADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCCEE-EEEECCc-----------hhHHHHHhh--CCEEEEcCCCCc
Confidence 4689999999 776 888899999999874 4677542 345555554 899999998865
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.2 Score=43.89 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc------e--ecCeeccC-C-HHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK------T--HLDLPVFN-T-VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~------~--i~Gip~y~-s-l~el~~~~~iDlavi~vp~~ 98 (306)
+.++|+|+|+ |+.|....+.|.+.|+++. .++++.... + -.|+.++. + .++... ++|++|.++...
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVI-LTDEKEEDQLKEALEELGELGIELVLGEYPEEFLE--GVDLVVVSPGVP 79 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhh--cCCEEEECCCCC
Confidence 3578999999 6699888899999999975 677753100 0 11444332 2 223333 389998876655
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
..-+.+.+|.+.|++
T Consensus 80 ~~~~~~~~a~~~~i~ 94 (450)
T PRK14106 80 LDSPPVVQAHKKGIE 94 (450)
T ss_pred CCCHHHHHHHHCCCc
Confidence 555566766666654
|
|
| >COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.92 E-value=5.9 Score=36.32 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCCChH--HHHHHHHcCCeEEEeeCCCCCC------------ceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTF--HSKQAIEYGTKVVGGVSPGKGG------------KTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~--~~~~l~~~g~~vv~~VnP~~~g------------~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
.+|++|.- ..+|.. +.+.|+++|++-...|||+..- +-+.+.++|++|+|+..+ +|+++=++
T Consensus 5 i~iVLVep-~~~gNIG~vARaMKNfGl~eL~LV~Pr~~~~eeA~a~A~gA~dile~A~i~~tL~eAl~d--~~~v~aTt 80 (242)
T COG0565 5 IRIVLVEP-SHPGNIGSVARAMKNFGLSELRLVNPRAGLDEEARALAAGARDILENAKIVDTLEEALAD--CDLVVATT 80 (242)
T ss_pred cEEEEEcC-CCCccHHHHHHHHHhCCcceEEEECCCCCCCHHHHHHhccchhhhccCeeecCHHHHhcC--CCEEEEec
Confidence 46777876 344544 3689999999966699998731 124578899999998875 88876654
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=87.88 E-value=1.6 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.8
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
|.|+|++|-.|+...+.|++.|++++.....+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~ 32 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSS 32 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccc
Confidence 68999999999999999999999976444433
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=87.86 E-value=2 Score=43.21 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|+ |+.|+...+.++.+|.+++.. ++|.... ....|..+. +++++... .|+++.++....+.. -+.
T Consensus 253 aGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~--ADVVI~tTGt~~vI~-~e~ 327 (477)
T PLN02494 253 AGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSE--ADIFVTTTGNKDIIM-VDH 327 (477)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhh--CCEEEECCCCccchH-HHH
Confidence 3589999999 999999999999999996532 4553210 112355544 57787665 899998777654321 122
Q ss_pred HHHcCCCEEEEecCCC-ChhHHHHH
Q psy8894 107 ALDAEMPLIVCITEGI-PQLDMVKV 130 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf-~e~~~~~~ 130 (306)
.....-.++++....| .|-+...+
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL 352 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGL 352 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHH
Confidence 2223334444434443 34444443
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.85 E-value=2.8 Score=40.50 Aligned_cols=86 Identities=19% Similarity=0.190 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------Cc---e---------ecC--eecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------GK---T---------HLD--LPVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y--~sl~ 80 (306)
.||+|-|+ |+.|+...+.+.+. ++++++.-|+... |. + +.| ++++ ++.+
T Consensus 3 ~ki~INGf-GRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 3 TKVAINGF-GRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred eEEEEECc-ChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999886654 6888754222110 10 1 223 3444 2577
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVIL 119 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEe
Confidence 7773 236999999999999999999999999998775
|
|
| >PLN02235 ATP citrate (pro-S)-lyase | Back alignment and domain information |
|---|
Probab=87.82 E-value=4.3 Score=40.22 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCC--CceEEEEecCCCCCCCCCHHHHHHHhh----cCCCccEEEEEEeeC--C---
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVG--LGQTLCVGIGGDPFNGTNFIDCLEVFL----KDPETKGIILIGEIG--G--- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g--~g~s~~vs~Gn~~~~dv~~~d~l~~l~----~D~~t~~I~ly~E~~--~--- 235 (306)
..|+|+.+.--++++.+.++.....| --...|.-+|+.+ ..-...+.+.-+. .||+.++|++-+=+. +
T Consensus 268 ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a-~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~ 346 (423)
T PLN02235 268 PKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAP-NEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTD 346 (423)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCC-CHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchh
Confidence 45999999999999999999998888 4588889999874 4445566666666 799999997765321 1
Q ss_pred -C------------------CCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcC--CeEeCCHhHHHH
Q psy8894 236 -G------------------PNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAG--VIVTRSPAQMGN 294 (306)
Q Consensus 236 -~------------------~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aG--vi~~~~~~el~~ 294 (306)
+ ..++|||+=..|....- .-...+.++++.| +...+.-..|.+
T Consensus 347 VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~ee----------------G~~il~e~~~~~gl~i~~~~~~~~m~~ 410 (423)
T PLN02235 347 VAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQK----------------GLAKMRALGEEIGVPIEVYGPEATMTG 410 (423)
T ss_pred hhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHH----------------HHHHHHHhHHhcCCcEEEeCCCCCHHH
Confidence 1 14689988666666431 1233445566999 566662225555
Q ss_pred HHHHHH
Q psy8894 295 ELLKEM 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
+++...
T Consensus 411 a~~~av 416 (423)
T PLN02235 411 ICKQAI 416 (423)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=87.73 E-value=2 Score=43.14 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|. |+.|+.+.+.++.+|.+++.. .+|...-. ...|... .+++++.+. .|++++++....... ++
T Consensus 253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~--ADIVI~atGt~~iI~--~e 326 (476)
T PTZ00075 253 AGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVET--ADIFVTATGNKDIIT--LE 326 (476)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhc--CCEEEECCCcccccC--HH
Confidence 4689999999 999999999999999996522 46643100 1235543 358888765 999999875433221 23
Q ss_pred HHH-cCCCEEEEecCCC
Q psy8894 107 ALD-AEMPLIVCITEGI 122 (306)
Q Consensus 107 ~~~-~Gi~~vvi~t~Gf 122 (306)
..+ ..-.++++-+..+
T Consensus 327 ~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 327 HMRRMKNNAIVGNIGHF 343 (476)
T ss_pred HHhccCCCcEEEEcCCC
Confidence 333 3444455433333
|
|
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=87.67 E-value=5.1 Score=32.37 Aligned_cols=86 Identities=13% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hhHHHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 49 QAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PGAAKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 49 ~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~~~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
.++..||++++. -+. +|.-.-++.+ .+.++|++.++... +.+.+.++.+.+.|.+.+.++..|-..
T Consensus 22 ~l~~~G~~vi~l-G~~--------vp~e~~~~~a-~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 22 ALRDAGFEVIYT-GLR--------QTPEEIVEAA-IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHCCCEEEEC-CCC--------CCHHHHHHHH-HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 455679997631 111 2223223333 33579999998644 344555666666766444444555333
Q ss_pred hHHHHHHHHHHHhcCC-eEEccCCC
Q psy8894 125 LDMVKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 125 ~~~~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.+.. +..+++|+ .+++|+|-
T Consensus 92 ~~~~----~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 92 PEDY----ELLKEMGVAEIFGPGTS 112 (122)
T ss_pred HHHH----HHHHHCCCCEEECCCCC
Confidence 3212 12467888 88888874
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.2 Score=39.39 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
..++|.|.|++|-.|+...+.|.+.|++++...
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 456899999999999999999999999977543
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=8.7 Score=36.40 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-c--CCeEEEee--CCCCCCc--eec--C--eec----cCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-Y--GTKVVGGV--SPGKGGK--THL--D--LPV----FNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~--g~~vv~~V--nP~~~g~--~i~--G--ip~----y~sl~el~~~~~iDlavi~v 95 (306)
++|+|+|++|..|+.....+.. . +.+++ .+ ++...+. ++. + ..+ -.++.+... +.|++|++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~-L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELS-LYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEE-EEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 4799999999999988766643 3 33443 43 3433211 111 1 112 124323333 389999985
Q ss_pred Cc--h--------------hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 96 PP--P--------------GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 96 p~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.. . ...++++.+.+.+.+.++++.+..
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP 120 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 43 1 455677778888999998888764
|
|
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=87.49 E-value=5.1 Score=35.41 Aligned_cols=91 Identities=16% Similarity=0.064 Sum_probs=62.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe------eCCCCCCceec-CeeccCCHHhhhhc-CCCcEEEEe-----
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG------VSPGKGGKTHL-DLPVFNTVKEARDA-TGAEATVIY----- 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~------VnP~~~g~~i~-Gip~y~sl~el~~~-~~iDlavi~----- 94 (306)
+.++..|+||+|-.|+...+.+++. -|.-|+. ++|.. ++.+. -..=|..+++.... +++|++.-+
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at-~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTR 95 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT-DKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTR 95 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc-cceeeeEEechHHHHHHHhhhcCCceEEEeecccc
Confidence 3578999999999999999988886 6664444 34433 12211 12234456666543 469998765
Q ss_pred ----------cCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 ----------VPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 ----------vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+-.+.+.+..+.+.+.|++.++..++
T Consensus 96 gkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS 131 (238)
T KOG4039|consen 96 GKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSS 131 (238)
T ss_pred cccccCceEeechHHHHHHHHHHHhCCCeEEEEEec
Confidence 23456778888899999999988776
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.1 Score=43.14 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=41.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH----hhhhcCCCcEEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK----EARDATGAEATVIY 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~----el~~~~~iDlavi~ 94 (306)
+.++|.|+|+ |.||+...++|.+.|+..+...|... . . + -|..+. ++.. ..|++|.+
T Consensus 173 ~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~--~-~--~-~~~~~~~~~~~~~~--~~DvVIs~ 233 (338)
T PRK00676 173 KKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ--L-T--L-PYRTVVREELSFQD--PYDVIFFG 233 (338)
T ss_pred cCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc--c-c--c-chhhhhhhhhhccc--CCCEEEEc
Confidence 4689999999 99999999999999988666899886 2 1 1 133221 2222 48999986
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.27 E-value=5 Score=37.30 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
.++|.|.|++|-.|+...+.|.+.|+++++.+.
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence 468999999999999999999999999775543
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=87.26 E-value=2.7 Score=38.65 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-------CCHHhhhhcCCCcEEEEecCchhH--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-------NTVKEARDATGAEATVIYVPPPGA-- 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-------~sl~el~~~~~iDlavi~vp~~~~-- 100 (306)
+.+|.|+|- ...|+...+.|.+.|++++.-|-=.+...+..+++++ ..+.++..+++++++|+.++|-+.
T Consensus 2 ~~~IlvlgG-T~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~i 80 (248)
T PRK08057 2 MPRILLLGG-TSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQI 80 (248)
T ss_pred CceEEEEec-hHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHH
Confidence 467899997 5567888888888899855433222211111122222 234555555567777777766332
Q ss_pred -HHHHHHHHHcCCCEEE
Q psy8894 101 -AKAIHEALDAEMPLIV 116 (306)
Q Consensus 101 -~~~~~e~~~~Gi~~vv 116 (306)
..+.+.|.+.|++.+=
T Consensus 81 s~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 81 SANAAAACRALGIPYLR 97 (248)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 3455555566666543
|
|
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.1 Score=39.96 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------Cc---e---------ecC--eeccC--CHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------GK---T---------HLD--LPVFN--TVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y~--sl~ 80 (306)
.||+|-|+ |+.|+.+.|.+.+. ++++++.-|+... |. + +.| ++++. +++
T Consensus 3 ~~i~inGf-GRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 3 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred eEEEEEee-ChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 48999999 99999999886644 7888854332110 10 1 123 33442 567
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++= +.++|+++.|+......+.+...++.|.+.|++
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~i 119 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 119 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEe
Confidence 7663 236999999999999999999999999998775
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=3.3 Score=38.96 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC-CCc---eecCeec--------cC---CHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK-GGK---THLDLPV--------FN---TVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~-~g~---~i~Gip~--------y~---sl~el~~~~~iDlavi~v 95 (306)
++|+|+|+ |-+|.+..-.|.+.|.++. .|.+.. .-+ +..|+.+ |+ ...+... .+|++++++
T Consensus 3 m~I~IiGa-GaiG~~~a~~L~~~G~~V~-lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~--~~D~viv~v 78 (305)
T PRK05708 3 MTWHILGA-GSLGSLWACRLARAGLPVR-LILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAE--PIHRLLLAC 78 (305)
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCCCeE-EEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCccccc--ccCEEEEEC
Confidence 57999999 9999988878888888754 444421 000 0112211 11 1111112 489999999
Q ss_pred CchhHHHHHHHHHHc-CC-CEEEEecCCCChhH
Q psy8894 96 PPPGAAKAIHEALDA-EM-PLIVCITEGIPQLD 126 (306)
Q Consensus 96 p~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~ 126 (306)
-.....++++.+... +- ..++.++-|+..++
T Consensus 79 K~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e 111 (305)
T PRK05708 79 KAYDAEPAVASLAHRLAPGAELLLLQNGLGSQD 111 (305)
T ss_pred CHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHH
Confidence 998888888777552 22 23556888996543
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=2 Score=40.70 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
-++|+|+|.|+.+|+....+|.+.|+++. ..|.+. +++.++..+ .|++|.+++....
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~t-----------~~l~e~~~~--ADIVIsavg~~~~ 215 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSRS-----------TDAKALCRQ--ADIVVAAVGRPRL 215 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHhc--CCEEEEecCChhc
Confidence 57999999999999999999999999875 566553 168888766 8999999987644
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.07 E-value=5.1 Score=40.00 Aligned_cols=117 Identities=12% Similarity=0.159 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeec-------------cCCHHhhhh---------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPV-------------FNTVKEARD--------- 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~-------------y~sl~el~~--------- 84 (306)
+.++|+|.|. |+.|....+.|.+.|.++++.-| .. |. .-.|+.. ..++.+.++
T Consensus 227 ~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaVSD-~~-G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~ 303 (444)
T PRK14031 227 KGKVCLVSGS-GNVAQYTAEKVLELGGKVVTMSD-SD-GYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEG 303 (444)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEC-CC-CeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCC
Confidence 4689999999 99999999999999999885333 21 10 0012211 112222211
Q ss_pred ----cCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceecC
Q psy8894 85 ----ATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIAP 153 (306)
Q Consensus 85 ----~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~~ 153 (306)
..++|+.+=| +...-..+.++.....|++.|+=.+-|....+..+ +-+++|+.++ | |+-|++..
T Consensus 304 d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~----~L~~rgI~~~-PD~~aNAGGVivs 376 (444)
T PRK14031 304 ARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK----VFQDAKILYA-PGKAANAGGVSVS 376 (444)
T ss_pred cccccCCCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH----HHHHCCcEEe-ChhhccCCCeeee
Confidence 0246666654 33445566777777778875442333433333332 3467787665 5 44466654
|
|
| >PLN02735 carbamoyl-phosphate synthase | Back alignment and domain information |
|---|
Probab=87.03 E-value=5.3 Score=44.45 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=67.8
Q ss_pred ccccccccccccccccCCCcEEEEEcCCCC--C---------ChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH
Q psy8894 12 KVAEEIYAATRPNLRLTSKSKVICQGFTGK--Q---------GTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK 80 (306)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~VaVvGasg~--~---------G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~ 80 (306)
.+++|-++..-....-+..++|.|+|. |. . |+.+.+.|++.|++++ .||++. ..+. .+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~kkVLiiGs-G~~~igqa~e~d~SG~q~~kaLke~G~~Vi-~vd~np--~t~~-----~~~- 74 (1102)
T PLN02735 5 DTVTRAWSAATKAGKRTDLKKIMILGA-GPIVIGQACEFDYSGTQACKALKEEGYEVV-LINSNP--ATIM-----TDP- 74 (1102)
T ss_pred ccceecccccccCCcccCCCEEEEECC-CccccccceeecchHHHHHHHHHHcCCEEE-EEeCCc--cccc-----CCh-
Confidence 356666665554444455689999998 53 3 4456889999999987 777764 2221 111
Q ss_pred hhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC-CChhHHH-HHH-HHHHHhcCCeEEccCCCceec
Q psy8894 81 EARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG-IPQLDMV-KVK-HRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 81 el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G-f~e~~~~-~~~-~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
++ .|-.. ..|. ....+.+-|.+.++..|+. +-| -...... .+. +.+.+++|+.++||+-..+-.
T Consensus 75 ~~-----aD~~y-i~p~-~~e~v~~ii~~e~~D~Iip-~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~ 141 (1102)
T PLN02735 75 ET-----ADRTY-IAPM-TPELVEQVIAKERPDALLP-TMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKK 141 (1102)
T ss_pred hh-----CcEEE-eCCC-CHHHHHHHHHHhCCCEEEE-CCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHH
Confidence 11 12221 2332 2233334466678887664 433 2212211 111 234578899999987655444
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=87.00 E-value=4.7 Score=38.76 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=59.6
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCceecCeec---cCCHHhhhhcCCCcEEEE
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKTHLDLPV---FNTVKEARDATGAEATVI 93 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gip~---y~sl~el~~~~~iDlavi 93 (306)
|.-..+......-++|.++|+ |+.|+..++.|..+|..+.+- =++.. .++ -... +-+++++..+ -|++|+
T Consensus 150 ~~~~~~~g~~~~gK~vgilG~-G~IG~~ia~rL~~Fg~~i~y~~r~~~~--~~~-~~~~~~~~~d~~~~~~~--sD~ivv 223 (336)
T KOG0069|consen 150 WAGGWPLGYDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLP--PEE-AYEYYAEFVDIEELLAN--SDVIVV 223 (336)
T ss_pred ccCCccccccccCCEEEEecC-cHHHHHHHHhhhhccceeeeecccCCc--hhh-HHHhcccccCHHHHHhh--CCEEEE
Confidence 333344444455689999999 999999999999999555432 11221 111 1122 4488888876 999999
Q ss_pred ecCchh-HHHHH--HHHHHcCCCEEEE
Q psy8894 94 YVPPPG-AAKAI--HEALDAEMPLIVC 117 (306)
Q Consensus 94 ~vp~~~-~~~~~--~e~~~~Gi~~vvi 117 (306)
+.|-.. +..++ +.+...+...+++
T Consensus 224 ~~pLt~~T~~liNk~~~~~mk~g~vlV 250 (336)
T KOG0069|consen 224 NCPLTKETRHLINKKFIEKMKDGAVLV 250 (336)
T ss_pred ecCCCHHHHHHhhHHHHHhcCCCeEEE
Confidence 988643 34443 4444566665554
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.94 E-value=2.5 Score=40.98 Aligned_cols=86 Identities=16% Similarity=0.099 Sum_probs=59.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-----CCeEEEeeCCCCC--------------Cc-----e---------------ec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-----GTKVVGGVSPGKG--------------GK-----T---------------HL 71 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-----g~~vv~~VnP~~~--------------g~-----~---------------i~ 71 (306)
.+|+|-|+ |+.|+.+.|.+.+. ++++++.-||... |. + +.
T Consensus 4 ikVgINGF-GRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 4 IKVGINGF-GRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred eEEEEECc-ChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999 99999999987653 5788866554210 11 0 12
Q ss_pred Ce--ecc---CCHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 72 DL--PVF---NTVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 72 Gi--p~y---~sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
|. +++ .+.+++|= +.++|+++-|+..-...+-+..=++.|.|.|++
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkVii 134 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVI 134 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEE
Confidence 32 343 35677762 246999998888777777777777889998875
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=86.94 E-value=4 Score=39.92 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHH-----------hhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK-----------EARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~-----------el~~~~~iDlavi~vp~ 97 (306)
+..+|.|+|+ |-.|....++|...|+.-+..||+......-.+-..+-+.+ +...+..+++-|...+.
T Consensus 41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 119 (392)
T PRK07878 41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF 119 (392)
T ss_pred hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence 4678999999 88999999999999998666888765221111111221111 11112235555544443
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCce
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
....+.+.+.+ .+...|+..+..+ ....++.++|+++++.++--.+.|+
T Consensus 120 ~i~~~~~~~~~-~~~D~Vvd~~d~~---~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 120 RLDPSNAVELF-SQYDLILDGTDNF---ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred cCChhHHHHHH-hcCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 33333344443 3566555433232 2233344678888877765555443
|
|
| >COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.78 E-value=0.73 Score=47.64 Aligned_cols=178 Identities=15% Similarity=-0.010 Sum_probs=106.1
Q ss_pred eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH--HcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEcc
Q psy8894 69 THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL--DAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGP 145 (306)
Q Consensus 69 ~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~--~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGP 145 (306)
+..|-+.+...+.+++. -+-+ ..+++....-++..+ ...++.-+-+++.+..+.-++-.+..++..++ .++.=
T Consensus 306 tn~Gg~gvla~D~l~~~--g~~l--~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi 381 (598)
T COG1042 306 TNGGGPGVLAADALEER--GLKL--AELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVI 381 (598)
T ss_pred ecCCCccccchhHHHHc--CCCc--CCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEE
Confidence 34567777777777653 2222 223333333333222 35677777788888765433333333443332 33322
Q ss_pred CCCceecCc-c--ccccCCCCCCCCCCCEEEEecChhhHHHHH-HHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 146 NCPGIIAPE-Q--CKIGIMPGHIHQRGCVGVVSRSGTLTYEAV-HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 146 Nc~Gi~~~~-~--~~~~~~~~~~~~~G~va~vSqSG~~~~~~~-~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
.|.+..... . ..+... .....|+..+++|.|....... ..+++.|++++.....++. +...+.++..|+..+
T Consensus 382 ~~~~~~~~~~~~a~~~~~~--~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~~~pe~a~~--a~~~l~~~~~~~~~~ 457 (598)
T COG1042 382 VLPPASADPEETAEAIIRA--TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTYPTPERAVK--ALSALARYRRWLKKL 457 (598)
T ss_pred ecCCCCCCchhhhHHHHHh--hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCccCchHHHH--HHHHHHHHHHHHHhh
Confidence 222222111 1 001111 2346789999999999433332 4577899999999999999 888999999999999
Q ss_pred CCccEEEEEEeeCCCCCCCcEEEEEecCCCCCCCC--ccCCcccc
Q psy8894 222 PETKGIILIGEIGGGPNAKPVVSFIAGITAPPGRR--MGHAGAII 264 (306)
Q Consensus 222 ~~t~~I~ly~E~~~~~~~KPVvvlk~Grs~~~g~~--~sHtga~a 264 (306)
..| .|+|+. ++..+.+.++.+. ..+ .+|+..++
T Consensus 458 ~~~----~~~~~~-----~~~~~~~~e~~~~-l~~~gi~~~~~~~ 492 (598)
T COG1042 458 RET----PVFEGG-----GGTTLDEPEAKEL-LEAYGIPVPATIA 492 (598)
T ss_pred ccC----cccccC-----CccccCchhhhhH-HHHhcCccccccc
Confidence 998 225554 7778888877753 322 67777744
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=86.75 E-value=4.5 Score=38.08 Aligned_cols=108 Identities=20% Similarity=0.211 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC--CCCce---e-----cCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG--KGGKT---H-----LDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~--~~g~~---i-----~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.++.+.|. |..|....+.+.+. ++++++.++.+ ..|++ + .|+..-.++++.... .+|.++...-.+.
T Consensus 3 ~~vvqyGt-G~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAt-l~~~~~y~~~~~~ 80 (350)
T COG3804 3 LRVVQYGT-GSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLAT-LADAVIYAPLLPS 80 (350)
T ss_pred ceeEEecc-chHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceec-cccceeeecccch
Confidence 46788888 99998888877776 99999886533 23432 2 345555555554432 3444444322223
Q ss_pred HHHHHHHHHHcCCCEEEEecC-------CCChhHH-HHHHHHHHHhcCC-eEEcc
Q psy8894 100 AAKAIHEALDAEMPLIVCITE-------GIPQLDM-VKVKHRLIRQSKS-RLIGP 145 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi~t~-------Gf~e~~~-~~~~~~~ar~~gi-~iiGP 145 (306)
.+-.++|+++|++. + ++ +|...+. ++.. ++|.++|. .+.|-
T Consensus 81 -~~~y~rlL~aGiNV-v--~~g~~l~yPw~~~PelaeKpl-~lAaraGn~Tl~gt 130 (350)
T COG3804 81 -VDEYARLLRAGINV-V--TPGPVLQYPWFYPPELAEKPL-ELAARAGNATLHGT 130 (350)
T ss_pred -HHHHHHHHHcCCce-e--ccCccccCCCcCChHHhhchH-HHHHhcCCceEEec
Confidence 77889999999994 3 34 3333333 3444 46777775 66553
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=86.73 E-value=1.9 Score=38.41 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.++|.|||. |+.|..-.+.|++.|.++. .|+|+.
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga~Vt-Vvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGAQLR-VIAEEL 42 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCEEE-EEcCCC
Confidence 468999999 7777666778899998865 788874
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=86.59 E-value=1.2 Score=40.85 Aligned_cols=115 Identities=19% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCCce---e-------cC-eeccC-----CH------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGGKT---H-------LD-LPVFN-----TV------ 79 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g~~---i-------~G-ip~y~-----sl------ 79 (306)
+.++++|.|. |+.|....+.|.+.|.++++. .||+. -. + .. +.-|+ ..
T Consensus 31 ~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~G--ld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 31 EGKRVAIQGF-GNVGSHAARFLAELGAKVVAVSDSSGAIYDPDG--LDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp TTCEEEEEES-SHHHHHHHHHHHHTTEEEEEEEESSEEEEETTE--EHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEecCceEEEcCCC--chHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 4689999999 999999999999999998754 35542 11 0 11 23333 01
Q ss_pred HhhhhcCCCcEEEEec-CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceec
Q psy8894 80 KEARDATGAEATVIYV-PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIA 152 (306)
Q Consensus 80 ~el~~~~~iDlavi~v-p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~ 152 (306)
+++.+ .++|+.+-|. +..-..+.++..++.|+|.|+-.+-+....+..+ +.+++|+.++ | |+-|++.
T Consensus 108 ~~il~-~~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~----~L~~rGI~vi-PD~~aNaGGvi~ 179 (244)
T PF00208_consen 108 DEILS-VDCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE----ILRERGILVI-PDFLANAGGVIV 179 (244)
T ss_dssp CHGGT-SSSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH----HHHHTT-EEE--HHHHTTHHHHH
T ss_pred ccccc-ccccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH----HHHHCCCEEE-cchhhcCCCeEe
Confidence 13333 2599999885 4455566777677889998775444443333332 4578887766 5 4445554
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=86.48 E-value=3.3 Score=40.28 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=61.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh-----------hhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-----------RDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el-----------~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|..+.++|...|+.-+..+|+......-.+-.++-+-+++ ..+..+++-|...+.
T Consensus 40 ~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 40 HNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 3578999999 8899999999999998755678776421111111111111111 111224544444444
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
....+.+++.+ .+...|+..+..+ +...++.++|+++++.++--.+
T Consensus 119 ~i~~~~~~~~~-~~~DlVid~~Dn~---~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 119 RLTAENAVELL-NGVDLVLDGSDSF---ATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred ecCHHHHHHHH-hCCCEEEECCCCH---HHHHHHHHHHHHcCCCEEEEEE
Confidence 44444444444 3566655433333 1223344577787875554443
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.46 E-value=2.2 Score=41.03 Aligned_cols=199 Identities=14% Similarity=0.093 Sum_probs=109.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------Cc---e---------ecC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------GK---T---------HLD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g~---~---------i~G--ip~y~--s 78 (306)
.||+|-|+ |+.|+...+.+.+. ++++++.-|+... |. + +.| ++++. +
T Consensus 2 ~ki~INGf-GRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 2 IRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred eEEEEEcc-ChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 47999999 99999998876543 5778754332210 10 0 223 34443 3
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChh-HH------HHHHHHHHHhcCCeEEccCCCce
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL-DM------VKVKHRLIRQSKSRLIGPNCPGI 150 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~-~~------~~~~~~~ar~~gi~iiGPNc~Gi 150 (306)
.+++|= +.++|+++.|+......+.+...++.|.+.|++ |. ++.+ +. ..- +++.....--+-.|+|...
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~i-Sa-p~~d~d~p~vV~gVN~-~~~~~~~~~IISnasCTTn 157 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLI-TA-PGKGEDIGTYVVGVNH-HEYDHEDHNIISNASCTTN 157 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEe-CC-CCCCCCCceEecccCH-HHhccCCCCEEECCcHHHH
Confidence 466652 236999999999999999999999999998775 43 3222 20 000 1122111124557777522
Q ss_pred ecC-c----c-------ccccC-------C-----CC---CCCCCCCEEEEecChhhHHHHHHHHHhCC---CceEEEEe
Q psy8894 151 IAP-E----Q-------CKIGI-------M-----PG---HIHQRGCVGVVSRSGTLTYEAVHQTTQVG---LGQTLCVG 200 (306)
Q Consensus 151 ~~~-~----~-------~~~~~-------~-----~~---~~~~~G~va~vSqSG~~~~~~~~~~~~~g---~g~s~~vs 200 (306)
.-. . . ..+++ . +. ...++....+|.+|.+.+.++..-+-+.. -|.+.-|.
T Consensus 158 ~Lap~lkvL~~~fgI~~~~mTTiha~T~~q~~~D~~~~d~r~~raaa~NiIPt~tGaakav~~vlP~L~gki~g~avRVP 237 (337)
T PRK07403 158 CLAPIAKVLHDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELKGKLNGIALRVP 237 (337)
T ss_pred HHHHHHHHHHHhcCeeEEEEEEEeeecCCcccccccccccccccccccccccCCcchhhhhhhcCcccCCcEEEEEEEec
Confidence 111 0 0 00000 0 10 12344567789999887777653222111 12222222
Q ss_pred cCCCC--------CCCCCHHHHHHHhhcCCC--ccEEEEEEee
Q psy8894 201 IGGDP--------FNGTNFIDCLEVFLKDPE--TKGIILIGEI 233 (306)
Q Consensus 201 ~Gn~~--------~~dv~~~d~l~~l~~D~~--t~~I~ly~E~ 233 (306)
+=|-. -..++..|+.+.|.+-.+ -+.|+-|-|.
T Consensus 238 t~~vs~~dl~v~l~k~~t~eeI~~~~~~as~~~l~gil~~~~~ 280 (337)
T PRK07403 238 TPNVSVVDLVVQVEKRTITEQVNEVLKDASEGPLKGILEYSDL 280 (337)
T ss_pred cCCcEEEEEEEEECCCCCHHHHHHHHHHHhhCccccccCeecC
Confidence 22210 035788888888877543 5778888764
|
|
| >COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.45 E-value=6.5 Score=35.09 Aligned_cols=102 Identities=25% Similarity=0.290 Sum_probs=66.6
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHH---HHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc---
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSK---QAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP--- 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~---~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~--- 97 (306)
..++....+|.|.|+ ||-|-.+-+ .|...|++.+ .|+|... .....|... . =|+++.....
T Consensus 33 ~~i~~~~gkv~V~G~-GkSG~Igkk~Aa~L~s~G~~a~-fv~p~ea--~hgdlg~i~------~---~DvviaiS~SGeT 99 (202)
T COG0794 33 ELILECKGKVFVTGV-GKSGLIGKKFAARLASTGTPAF-FVGPAEA--LHGDLGMIT------P---GDVVIAISGSGET 99 (202)
T ss_pred HHHHhcCCcEEEEcC-ChhHHHHHHHHHHHHccCCceE-EecCchh--ccCCccCCC------C---CCEEEEEeCCCcH
Confidence 345555789999999 888766543 5556699864 8999741 112223322 2 5888877655
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
+....+++.+.+.|++.|-+ |.. ++.. ++|..++.+.=|..
T Consensus 100 ~el~~~~~~aK~~g~~liai-T~~-~~Ss-------Lak~aDvvl~ip~~ 140 (202)
T COG0794 100 KELLNLAPKAKRLGAKLIAI-TSN-PDSS-------LAKAADVVLVIPVK 140 (202)
T ss_pred HHHHHHHHHHHHcCCcEEEE-eCC-CCCh-------HHHhcCeEEEccCc
Confidence 44556778888899997664 543 3332 67778887776754
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=5.4 Score=42.86 Aligned_cols=116 Identities=12% Similarity=0.027 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHH-------HH-cCCe--EEEeeCCCCCCceecCee------------ccCCHHhhh---
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQA-------IE-YGTK--VVGGVSPGKGGKTHLDLP------------VFNTVKEAR--- 83 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l-------~~-~g~~--vv~~VnP~~~g~~i~Gip------------~y~sl~el~--- 83 (306)
+..+|+++|. |+.|+..++.+ .+ +|.+ +++..|.+..--.-.|+. ...+++.+.
T Consensus 457 ~~i~i~l~G~-G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~i 535 (810)
T PRK09466 457 KRIGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLWL 535 (810)
T ss_pred ceEEEEEEec-CCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHHH
Confidence 4678999999 99999876543 22 3544 666555432100111111 111222221
Q ss_pred hcCC--CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC-----ChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 84 DATG--AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI-----PQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 84 ~~~~--iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf-----~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+ .+++|.+++.+.......+++++|++.| |+.- +-+...++ .++|+++|.++.=--+.|
T Consensus 536 ~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV---taNK~~~a~~~~~~~~l-~~~a~~~~~~~~yEasV~ 604 (810)
T PRK09466 536 RAHPYDELVVLDVTASEQLALQYPDFASHGFHVI---SANKLAGSSPSNFYRQI-KDAFAKTGRHWLYNATVG 604 (810)
T ss_pred hhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE---cCCcccccccHHHHHHH-HHHHHHcCCeEEEeceee
Confidence 1111 3599999999888888889999999943 4322 11222334 357899997766444443
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=2.9 Score=37.34 Aligned_cols=36 Identities=22% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+..+|+|+|+ |-+|....++|...|..-+..+|+..
T Consensus 27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 3578999999 99999999999999988555777763
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=5.7 Score=39.72 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCC-cee---c------C-ee-----ccC-----CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGG-KTH---L------D-LP-----VFN-----TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g-~~i---~------G-ip-----~y~-----sl~ 80 (306)
+.++|+|.|. |+.|....+.|.+.|.++++. .||+.-- +++ . | +. -|+ +-+
T Consensus 227 ~g~~vaIQGf-GnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~ 305 (445)
T PRK14030 227 KGKTVAISGF-GNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGK 305 (445)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCc
Confidence 4689999998 999999999999999998864 4554210 000 0 0 00 111 112
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC----CCceecC
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN----CPGIIAP 153 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~~ 153 (306)
++.. .++|+.+-| +...-..+.++...+.+++.|+=.+-|....+..+ +-+++|+.++ |. +-|++..
T Consensus 306 ~~~~-~~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~----iL~~rGI~~v-PD~~aNAGGVivs 377 (445)
T PRK14030 306 KPWE-QKVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAID----KFIAAKQLFA-PGKAVNAGGVATS 377 (445)
T ss_pred ccee-ccccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHH----HHHHCCCEEe-CcceecCCCeeee
Confidence 2222 257877765 44555667778888889997665555644334333 4478887766 64 3466653
|
|
| >KOG2018|consensus | Back alignment and domain information |
|---|
Probab=85.98 E-value=2.9 Score=39.95 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e----------cCee-----------------------c
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H----------LDLP-----------------------V 75 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i----------~Gip-----------------------~ 75 (306)
..=|+|||+ |..|+.+...|.+.|++-+-.||+....-. + -|.| .
T Consensus 74 ~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l 152 (430)
T KOG2018|consen 74 NSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNML 152 (430)
T ss_pred CcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhh
Confidence 345899999 999999999999999987778888653210 0 0211 1
Q ss_pred cC--CHHhhhhcCCCcEEEEecCc-hhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 76 FN--TVKEARDATGAEATVIYVPP-PGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 76 y~--sl~el~~~~~iDlavi~vp~-~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
|. +=+|+... +||.+++|.-. +.-.++++.|..+|++.+ -++|.
T Consensus 153 ~~~~s~edll~g-nPdFvvDciDNidtKVdLL~y~~~~~l~Vi--ss~Ga 199 (430)
T KOG2018|consen 153 WTSSSEEDLLSG-NPDFVVDCIDNIDTKVDLLEYCYNHGLKVI--SSTGA 199 (430)
T ss_pred cCCCchhhhhcC-CCCeEeEhhhhhhhhhHHHHHHHHcCCceE--eccCc
Confidence 21 12333322 49999999755 666899999999999953 46665
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.95 E-value=7.3 Score=36.99 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCC---Ccee--------c----CeeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKG---GKTH--------L----DLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~---g~~i--------~----Gip~y~sl~el~~~~~iDlav 92 (306)
+..+|+|+|+ |.+|......+...| .+ +..+|.+.. |... . .+..+.+.+++. +.|++|
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~---~ADiVV 78 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIK---DSDVVV 78 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhC---CCCEEE
Confidence 4579999999 999988766666667 45 446665431 1111 1 122335566553 389999
Q ss_pred Eec--Cc--------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 93 IYV--PP--------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 93 i~v--p~--------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++. |. +...++++++.+.+-+.++++.+.
T Consensus 79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 987 32 335577777778887885555544
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.9 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.120 Sum_probs=23.1
Q ss_pred EEEEcCCCCCChHHHHHHHHcC--CeEEEe
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYG--TKVVGG 60 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g--~~vv~~ 60 (306)
|+|.|++|..|+...+.++++. |++++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~L 30 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVAL 30 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEE
Confidence 6899999999999888888874 777654
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.90 E-value=4.6 Score=36.89 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
+|.|.|++|-.|+...+.|.+.|+++++.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 49999999999999999999999998743
|
|
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.5 Score=42.44 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHH----cCCe-EEEeeCCCCCCc--eecCeec-----------c-----CCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIE----YGTK-VVGGVSPGKGGK--THLDLPV-----------F-----NTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~----~g~~-vv~~VnP~~~g~--~i~Gip~-----------y-----~sl~el~~~~ 86 (306)
+-.++|.||||=.|+++.+.+.+ .+.. -+++=|++.-.+ +..+.+. - .||.++...
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~- 83 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ- 83 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh-
Confidence 34589999999999998877666 2554 233334332100 0001111 1 236677665
Q ss_pred CCcEEEEecCchhH--HHHHHHHHHcCCCEEEEecCCCChh--HHHHHHHHHHHhcCCeEEc
Q psy8894 87 GAEATVIYVPPPGA--AKAIHEALDAEMPLIVCITEGIPQL--DMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 87 ~iDlavi~vp~~~~--~~~~~e~~~~Gi~~vvi~t~Gf~e~--~~~~~~~~~ar~~gi~iiG 144 (306)
..+++=|+.|-.. +.+++.|++.|.+.+=| +|=++- .++..-.+.|++.|+-|++
T Consensus 84 -~~vivN~vGPyR~hGE~VVkacienG~~~vDI--SGEP~f~E~mq~kYhd~A~ekGVYIVs 142 (423)
T KOG2733|consen 84 -ARVIVNCVGPYRFHGEPVVKACIENGTHHVDI--SGEPQFMERMQLKYHDLAKEKGVYIVS 142 (423)
T ss_pred -hEEEEeccccceecCcHHHHHHHHcCCceecc--CCCHHHHHHHHHHHHHHHHhcCeEEEe
Confidence 7888888888554 67999999999999876 553321 1222233578999976664
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=85.70 E-value=9.1 Score=35.85 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=82.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEE-EeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH---------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVV-GGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA--------- 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~--------- 100 (306)
++++|+|- ..-.-+..+.|.+.|+++. ++.+-.. ....|+..+++.++..+. .|++|+-+|-..-
T Consensus 2 ~~~~v~gg-d~r~~~~~~~l~~~g~~v~~~g~~~~~--~~~~~~~~~~~~~~~~~~--~~~~i~p~~~~~~~~~i~~~~~ 76 (287)
T TIGR02853 2 IHIAVIGG-DARQLELIRKLEELDAKISLIGFDQLE--DGFTGAVKCELLELDLTT--LDVVILPVPGTSHDGKVATVFS 76 (287)
T ss_pred cEEEEEcc-cHHHHHHHHHHHHCCCEEEEEeccccc--cccccceeecchhhhhcc--CCEEEECCccccCCceEecccc
Confidence 57999994 2223345788999999943 3343121 224477788877775555 8999998772211
Q ss_pred -------HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE---ccCCCceecCccc---ccc--CCCCCC
Q psy8894 101 -------AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI---GPNCPGIIAPEQC---KIG--IMPGHI 165 (306)
Q Consensus 101 -------~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii---GPNc~Gi~~~~~~---~~~--~~~~~~ 165 (306)
.++++.+- ... + +.+|+...+.+ +.|+++|++++ .-+..-+.|.... .+. ......
T Consensus 77 ~~~~~l~~~~l~~~~---~~~-~-~~~G~~~~~l~----~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~ 147 (287)
T TIGR02853 77 NEKVVLTPELLESTK---GHC-T-IYVGISNPYLE----QLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDF 147 (287)
T ss_pred cCCccccHHHHHhcC---CCC-E-EEEecCCHHHH----HHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCC
Confidence 22233222 222 2 34677655543 26899998877 2122222332211 000 000001
Q ss_pred CCCCCEEEEecChhhHHHHHHHHHhCCC
Q psy8894 166 HQRGCVGVVSRSGTLTYEAVHQTTQVGL 193 (306)
Q Consensus 166 ~~~G~va~vSqSG~~~~~~~~~~~~~g~ 193 (306)
...|.-..|--.|.++..+...+...|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~ 175 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA 175 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC
Confidence 2345544555569999999988877654
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=85.38 E-value=3.1 Score=40.43 Aligned_cols=116 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc---------C--CHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF---------N--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y---------~--sl~el~~~~~iDlavi~vp~ 97 (306)
+.++|+|+|+ |-.|+.+.++|...|..-+..||+......-.+-..+ + .+.+-..+..+++-+...+.
T Consensus 134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 4678999999 8899999999999999755688876421111111111 1 11111111235554444443
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
....+.+++.+ .+...|+..+..+ + ....+.++|+++++.++--...|
T Consensus 213 ~~~~~~~~~~~-~~~D~Vv~~~d~~-~--~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 213 RVTSDNVEALL-QDVDVVVDGADNF-P--TRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred cCChHHHHHHH-hCCCEEEECCCCH-H--HHHHHHHHHHHcCCCEEEEEecc
Confidence 33334444444 3567666433333 1 22334467888888777655544
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.35 E-value=6.4 Score=41.46 Aligned_cols=114 Identities=13% Similarity=0.124 Sum_probs=63.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeec-cC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPV-FN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~-y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|...|..-+..||+.........-.+ |. -+.+-..+.+|++-|.+.+..
T Consensus 43 ~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred cCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 588999999 888999999999988875556766542111111111 11 011111122356655555555
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN 146 (306)
...+.+++.++ ++..|+..+..|+ .+....+.+.|+++++.++--.
T Consensus 122 i~~~n~~~~l~-~~DvVid~~D~~~-~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 122 INADNMDAFLD-GVDVVLDGLDFFQ-FEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CChHHHHHHHh-CCCEEEECCCCCc-HHHHHHHHHHHHHCCCCEEEee
Confidence 55556666654 5776554333332 2222333456888888777433
|
|
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=85.22 E-value=5.5 Score=39.03 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=62.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--ce---------ec--C--eeccCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--KT---------HL--D--LPVFNT 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~~---------i~--G--ip~y~s 78 (306)
++|+|.|++|..|+..++.++++ .|++++.. +|+... ++ .. | .+++.-
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 68999999999999888777765 58876542 222100 00 00 1 233332
Q ss_pred ---HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 79 ---VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 79 ---l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
+.++.+..++|+++..+..-.-..-.-+++++|.+..+ +.. |.- .-.+..+++++++.+++
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaL--ANK--EsLV~aG~li~~~a~~~~~~I~ 147 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIAL--ANK--ESLVTAGHLFLDAVKKYGVQLL 147 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEE--ech--hHHHhhHHHHHHHHHHcCCeEE
Confidence 33333333478888877777777777777888866433 322 110 11333346677765544
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=85.21 E-value=7 Score=36.39 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|....++|...|..-+..||+......-.+-..+.. +.+-..+..|++-|...+.
T Consensus 29 ~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 4578999999 889999999999999775557877642211112222211 1122222347776666655
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
....+.+++....+...|+. +.+-... ...+.+.|+++++.++
T Consensus 108 ~i~~e~~~~ll~~~~D~VId-aiD~~~~--k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 108 FITPDNVAEYMSAGFSYVID-AIDSVRP--KAALIAYCRRNKIPLV 150 (268)
T ss_pred ccChhhHHHHhcCCCCEEEE-cCCCHHH--HHHHHHHHHHcCCCEE
Confidence 44556667777667786653 5442121 2223357899998777
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.18 E-value=3.3 Score=41.18 Aligned_cols=117 Identities=19% Similarity=0.244 Sum_probs=67.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.-++|+|+|+ |+.|+...+.++.+|.+++.. ++|...-. ...|..+. +++++.+. .|++|.++....+.+ .+
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~-~l~eal~~--aDVVI~aTG~~~vI~--~~ 284 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM-TMEEAAEL--GDIFVTATGNKDVIT--AE 284 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec-CHHHHHhC--CCEEEECCCCHHHHH--HH
Confidence 5679999999 999999999999999986522 55543101 12365543 57777664 999999886544332 12
Q ss_pred HHH-cCCCEEEEecCCCC-hhHHHHHHHHHHHhcCCeEEccCCCceecCc
Q psy8894 107 ALD-AEMPLIVCITEGIP-QLDMVKVKHRLIRQSKSRLIGPNCPGIIAPE 154 (306)
Q Consensus 107 ~~~-~Gi~~vvi~t~Gf~-e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~ 154 (306)
..+ ..-..+++....|. |-+...+. +.+ ...+-++|+.-.+..|.
T Consensus 285 ~~~~mK~GailiNvG~~d~Eid~~~L~-~~~--~~~~~v~~~v~~y~~~~ 331 (425)
T PRK05476 285 HMEAMKDGAILANIGHFDNEIDVAALE-ELA--VKWREIKPQVDEYTLPD 331 (425)
T ss_pred HHhcCCCCCEEEEcCCCCCccChHHHh-hcC--cceeecCCCceEEEeCC
Confidence 222 22333444344443 22333322 222 12344577765555553
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=85.13 E-value=3.1 Score=41.35 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=49.2
Q ss_pred cCCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCC--ce--ecCeeccC--CHHhhhhcCCCcEEEEe--cCc
Q psy8894 27 LTSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGG--KT--HLDLPVFN--TVKEARDATGAEATVIY--VPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g--~~--i~Gip~y~--sl~el~~~~~iDlavi~--vp~ 97 (306)
+.+.++|.|+|. |..|.. ..+.|.+.|+++. +.|.+... .+ -.|++++. +.+.+ + ++|++|+. +|+
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~~~~~~~~-~--~~d~vv~spgi~~ 78 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVS-GSDLKESAVTQRLLELGAIIFIGHDAENI-K--DADVVVYSSAIPD 78 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCCeEE-EECCCCChHHHHHHHCCCEEeCCCCHHHC-C--CCCEEEECCCCCC
Confidence 455678999999 999988 5889999999976 66654310 11 12666542 22223 2 38988764 343
Q ss_pred hhHHHHHHHHHHcCCC
Q psy8894 98 PGAAKAIHEALDAEMP 113 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~ 113 (306)
. -+.++++.++|++
T Consensus 79 ~--~~~~~~a~~~~i~ 92 (461)
T PRK00421 79 D--NPELVAARELGIP 92 (461)
T ss_pred C--CHHHHHHHHCCCc
Confidence 2 2345555555555
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.96 E-value=2.1 Score=39.80 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=59.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEE---EecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATV---IYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlav---i~vp~~~~~~~~ 104 (306)
.+.+++.|.|||+..|+...+.|.+.|++++ .|..+. +.. ...+. ++..++++++-+ +.+-++.+..+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~li-LvaR~~--~kL--~~la~---~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLI-LVARRE--DKL--EALAK---ELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEE-EEeCcH--HHH--HHHHH---HHHHhhCceEEEEECcCCChhHHHHHH
Confidence 3467899999999999999999999999987 777764 221 12233 222222233322 356667788888
Q ss_pred HHHHHc--CCCEEEEecCCCC
Q psy8894 105 HEALDA--EMPLIVCITEGIP 123 (306)
Q Consensus 105 ~e~~~~--Gi~~vvi~t~Gf~ 123 (306)
++..+. .|..+++ ..||.
T Consensus 76 ~~l~~~~~~IdvLVN-NAG~g 95 (265)
T COG0300 76 DELKERGGPIDVLVN-NAGFG 95 (265)
T ss_pred HHHHhcCCcccEEEE-CCCcC
Confidence 888887 5886665 77775
|
|
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.92 E-value=5.6 Score=38.60 Aligned_cols=91 Identities=18% Similarity=0.058 Sum_probs=59.3
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC----------ceec----------------C-eeccC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG----------KTHL----------------D-LPVFN 77 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g----------~~i~----------------G-ip~y~ 77 (306)
--.+|.||.+||+ |.||+-........ |+++++.-|.+..+ +++. | +-+-.
T Consensus 13 a~G~PiRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~ 91 (438)
T COG4091 13 AEGKPIRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTD 91 (438)
T ss_pred ccCCceEEEEecc-cccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEec
Confidence 3467999999999 99999887666665 99988764433211 1110 1 11222
Q ss_pred CHHhhhhcCCCcEEEEecC-chhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARDATGAEATVIYVP-PPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp-~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.+.+.....+|++|..|- |+.-..+.-+++++|.+.|.+
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMm 132 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMM 132 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEE
Confidence 3444443335999998765 455677888999999886653
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.87 E-value=1 Score=44.49 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.++|+|+|+ |.+|+...+.+...|++.+..+|+..
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 34589999999 99999999999988986445777763
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=84.77 E-value=2.7 Score=39.39 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=54.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe-----------------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY----------------- 94 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~----------------- 94 (306)
+|.|.|++|-.|+...+.+. .+++++ +.+.+. .++.-..++.++..+..||++|=+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~-a~~~~~-----~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~ 74 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVI-ATDRAE-----LDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAF 74 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEE-eccCcc-----ccccChHHHHHHHHhhCCCEEEECccccccccccCCHHHHH
Confidence 49999999998988887777 567776 454432 233445556677665568888754
Q ss_pred -cCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 -VPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 -vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++...+..+++.|.+.|.+.|-+ |+
T Consensus 75 ~vNa~~~~~lA~aa~~~ga~lVhi-ST 100 (281)
T COG1091 75 AVNATGAENLARAAAEVGARLVHI-ST 100 (281)
T ss_pred HhHHHHHHHHHHHHHHhCCeEEEe-ec
Confidence 33344556778888888887664 53
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=4.3 Score=36.17 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
++|.|+|+++..|+...+.|.+.|++++ .++.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~-~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVI-ATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEE-EEEC
Confidence 3689999999999999999999999976 4443
|
|
| >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.56 E-value=2.6 Score=40.26 Aligned_cols=90 Identities=8% Similarity=-0.137 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeC-C-CCCCcee--cCeecc-CCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVS-P-GKGGKTH--LDLPVF-NTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~Vn-P-~~~g~~i--~Gip~y-~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..+||| ||+|..|+...+.|.+.+|. -+.++. + ...|+++ .|..+. ..+++-.- .++|+++. .+.+...+
T Consensus 3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f-~~vDia~f-ag~~~s~~ 79 (322)
T PRK06901 3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEW-ADFNYVFF-AGKMAQAE 79 (322)
T ss_pred cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCc-ccCCEEEE-cCHHHHHH
Confidence 357999 99999999999999988875 122333 2 3334433 232211 12322211 25999998 99999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.++|...|=+ |+-|.
T Consensus 80 ~ap~a~~aG~~VIDn-Ssa~R 99 (322)
T PRK06901 80 HLAQAAEAGCIVIDL-YGICA 99 (322)
T ss_pred HHHHHHHCCCEEEEC-ChHhh
Confidence 999999999886553 66554
|
|
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=84.52 E-value=2.8 Score=41.63 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-e--CCCCCCceecCeecc---CC---HHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-V--SPGKGGKTHLDLPVF---NT---VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-V--nP~~~g~~i~Gip~y---~s---l~el~~~~~iDlavi~vp~~~~ 100 (306)
.++|.|+|. |.-.......+++.|+++++. . ||.. ..+...-++ .+ +.++.++++||++|...-...+
T Consensus 2 ~~kVLvlG~-G~re~al~~~l~~~g~~v~~~~~~~Npg~--~~~a~~~~~~~~~d~e~l~~~~~~~~id~Vi~~~d~~l~ 78 (435)
T PRK06395 2 TMKVMLVGS-GGREDAIARAIKRSGAILFSVIGHENPSI--KKLSKKYLFYDEKDYDLIEDFALKNNVDIVFVGPDPVLA 78 (435)
T ss_pred ceEEEEECC-cHHHHHHHHHHHhCCCeEEEEECCCChhh--hhcccceeecCCCCHHHHHHHHHHhCCCEEEECCChHHH
Confidence 368999998 544445566788888875443 4 4432 111111111 23 3334444568888776444455
Q ss_pred HHHHHHHHHcCCC
Q psy8894 101 AKAIHEALDAEMP 113 (306)
Q Consensus 101 ~~~~~e~~~~Gi~ 113 (306)
...++++.+.|++
T Consensus 79 ~~~~~~l~~~Gi~ 91 (435)
T PRK06395 79 TPLVNNLLKRGIK 91 (435)
T ss_pred HHHHHHHHHCCCc
Confidence 5667777777777
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=84.46 E-value=5.2 Score=38.42 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEe
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGG 60 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~ 60 (306)
.++++|.|.|++|-.|+...+.|.+. |+++++.
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 35788999999999999999999987 5887644
|
|
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=84.44 E-value=0.85 Score=40.98 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=47.2
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCCCCCCC---------ccCCcccc
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITAPPGRR---------MGHAGAII 264 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~~~g~~---------~sHtga~a 264 (306)
++.+.|+.+.+||++++|+|.+++.+ +..+||||++--+-+. .+.- +..++.+.
T Consensus 33 ~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~s-ggy~lasaad~I~a~p~~~vg 111 (222)
T cd07018 33 DLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQ-GQYYLASAADEIYLNPSGSVE 111 (222)
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCc-hhhhhhhhCCEEEECCCceEE
Confidence 34556667788999999999999876 2368999999776332 1211 23333332
Q ss_pred cCCC-CCHHHHHHHHHHcCCeE
Q psy8894 265 SGGK-GGAQDKIDALEKAGVIV 285 (306)
Q Consensus 265 ~~~~-g~~~~~~a~~~~aGvi~ 285 (306)
.-+. ....-+..+|++.|+-.
T Consensus 112 ~iGv~~~~~~~~~ll~klGv~~ 133 (222)
T cd07018 112 LTGLSAETLFFKGLLDKLGVEV 133 (222)
T ss_pred eeccchhhhhHHHHHHHcCCcE
Confidence 1100 13345678899999865
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.42 E-value=2.3 Score=35.54 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCc-eecCeeccCCHHhhhhc-----CCCcEEEEecCchhH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGK-THLDLPVFNTVKEARDA-----TGAEATVIYVPPPGA- 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~-~i~Gip~y~sl~el~~~-----~~iDlavi~vp~~~~- 100 (306)
+.++|++||+ | .|......|.+.|+++++. +||..... ...++.+. .+|+-+. .+.|++--+-||...
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v--~dDlf~p~~~~y~~a~liysirpp~el~ 91 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAF--VDDLFNPNLEIYKNAKLIYSIRPPRDLQ 91 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEE--ECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence 3578999999 8 7877778888899998855 55553100 01122222 1222221 248888877666554
Q ss_pred HHHHHHHHHcCCCEEE
Q psy8894 101 AKAIHEALDAEMPLIV 116 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vv 116 (306)
..+++-+-+.|+..++
T Consensus 92 ~~~~~la~~~~~~~~i 107 (134)
T PRK04148 92 PFILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 5555666667888654
|
|
| >PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=84.40 E-value=2.5 Score=46.80 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCC-C---------ChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 29 SKSKVICQGFTGK-Q---------GTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 29 ~~~~VaVvGasg~-~---------G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..++|.|+|..+. . |+.+.+.|++.|++++ .+|++.
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi-~v~~np 51 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVV-LVNPNP 51 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEE-EEeCCc
Confidence 4689999998433 3 3445788999999987 677664
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=6.1 Score=42.55 Aligned_cols=110 Identities=14% Similarity=0.096 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-------cCCe--EEEeeCCCCCCceecCeec--c----------CCHHh---hhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-------YGTK--VVGGVSPGKGGKTHLDLPV--F----------NTVKE---ARD 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-------~g~~--vv~~VnP~~~g~~i~Gip~--y----------~sl~e---l~~ 84 (306)
++.+|+++|. |+.|+..++.+.+ .|++ +++..|.+..--.-.|+.. + .++++ +..
T Consensus 464 ~~~~i~l~G~-G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (819)
T PRK09436 464 QVLDVFVIGV-GGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVK 542 (819)
T ss_pred ccccEEEEec-CHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHh
Confidence 6889999999 9999887654432 2444 6655553320000112110 0 11222 222
Q ss_pred cC--CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC---Ch--hHHHHHHHHHHHhcCCeEE
Q psy8894 85 AT--GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI---PQ--LDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 85 ~~--~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf---~e--~~~~~~~~~~ar~~gi~ii 143 (306)
.. +.|++|.|++.........+++++|++.| |+.- +. +...++ .++|+++|.++.
T Consensus 543 ~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VV---taNK~~~a~~~~~~~el-~~~a~~~~~~~~ 604 (819)
T PRK09436 543 EYHLLNPVIVDCTSSQAVADQYADFLAAGFHVV---TPNKKANTSSYAYYHQL-REAARKSRRKFL 604 (819)
T ss_pred hcCCCCCEEEECCCChHHHHHHHHHHHcCCEEE---cCCchhccCCHHHHHHH-HHHHHHcCCeEE
Confidence 11 25899999999888888899999999943 3321 11 122333 457899987665
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=3.3 Score=41.16 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=49.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--------eecCeeccCC---HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--------THLDLPVFNT---VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--------~i~Gip~y~s---l~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|+|. |+.|....+.|++.|+++. +.|.+.... +-.|+.++.. .+.+ . ++|++|....-.
T Consensus 14 ~~~i~v~G~-G~sG~a~a~~L~~~G~~V~-~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~--~~dlVV~Spgi~ 88 (458)
T PRK01710 14 NKKVAVVGI-GVSNIPLIKFLVKLGAKVT-AFDKKSEEELGEVSNELKELGVKLVLGENYLDKL-D--GFDVIFKTPSMR 88 (458)
T ss_pred CCeEEEEcc-cHHHHHHHHHHHHCCCEEE-EECCCCCccchHHHHHHHhCCCEEEeCCCChHHh-c--cCCEEEECCCCC
Confidence 468999999 9999988899999999865 556432101 1136665431 2333 3 389887752112
Q ss_pred hHHHHHHHHHHcCCC
Q psy8894 99 GAAKAIHEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~ 113 (306)
..-+.+..|.+.|++
T Consensus 89 ~~~p~~~~a~~~~i~ 103 (458)
T PRK01710 89 IDSPELVKAKEEGAY 103 (458)
T ss_pred CCchHHHHHHHcCCc
Confidence 334567777677766
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=84.25 E-value=4.3 Score=37.71 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=48.1
Q ss_pred EEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCce------e-------cCeeccCCHHhhhhcCCCcEEEEe---c
Q psy8894 34 ICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGKT------H-------LDLPVFNTVKEARDATGAEATVIY---V 95 (306)
Q Consensus 34 aVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~~------i-------~Gip~y~sl~el~~~~~iDlavi~---v 95 (306)
.|.|++|-.|+.+.+.|++.| +++. .++....... . .++.-+.++.++.+. +|+++-+ +
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr-~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g--~d~V~H~Aa~~ 77 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVR-VLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEG--VDVVFHTAAPV 77 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEE-EcccccccccchhhhcccceeEEEeccccHHHHHHHhcC--CceEEEeCccc
Confidence 389999999999999999998 5543 3332211011 1 112222345555543 7877754 1
Q ss_pred Cc--------------hhHHHHHHHHHHcCCCEEEE
Q psy8894 96 PP--------------PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 96 p~--------------~~~~~~~~e~~~~Gi~~vvi 117 (306)
+. ..+..+++.|.+.||+.+|.
T Consensus 78 ~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVy 113 (280)
T PF01073_consen 78 PPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVY 113 (280)
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 11 22445778888888887764
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.18 E-value=7.2 Score=36.26 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSP 63 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP 63 (306)
++.++|.|.|++|-.|+...+.|.+.|++++.. .++
T Consensus 3 ~~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 3 DGGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 345789999999999999999999999997543 344
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=3.7 Score=36.03 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=47.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCc-EEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE-ATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iD-lavi~vp~~~~~~~~~e~~~ 109 (306)
+++.|.|+++..|+...+.|.+.|++++ .++.+. .... .+.++.. +. ...+..-++...++++++.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~-~~~r~~--~~~~------~~~~~~~---~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVT-ATVRGP--QQDT------ALQALPG---VHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEE-EEeCCC--cchH------HHHhccc---cceEEcCCCCHHHHHHHHHHhhc
Confidence 5799999999999999999999999976 444332 1110 0111111 11 11233445556666666655
Q ss_pred cCCCEEEEecCCC
Q psy8894 110 AEMPLIVCITEGI 122 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf 122 (306)
.++..++. ..|.
T Consensus 70 ~~id~vi~-~ag~ 81 (225)
T PRK08177 70 QRFDLLFV-NAGI 81 (225)
T ss_pred CCCCEEEE-cCcc
Confidence 56887664 4444
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=84.01 E-value=0.71 Score=46.97 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=47.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e----ecCee----ccCCHHhhhhcCCCcEEEEecCchh-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T----HLDLP----VFNTVKEARDATGAEATVIYVPPPG- 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~----i~Gip----~y~sl~el~~~~~iDlavi~vp~~~- 99 (306)
.++|+|+|+ |.+|+...+.|...|++-+..+|++.... . ..|.. .+.++.+...+ .|+++.+|+...
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCC
Confidence 578999999 99999999999999986555788764111 1 11221 12234344433 788877764322
Q ss_pred --HHHHHHHHH
Q psy8894 100 --AAKAIHEAL 108 (306)
Q Consensus 100 --~~~~~~e~~ 108 (306)
..+.++.+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 344555543
|
|
| >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.87 E-value=3.9 Score=41.01 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-----CCeEEEeeCCCC-CCc-----------e-------------------ec
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-----GTKVVGGVSPGK-GGK-----------T-------------------HL 71 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-----g~~vv~~VnP~~-~g~-----------~-------------------i~ 71 (306)
..|++|+|-|+ |++|+.+.+.+.+. ++++++.+..+. .++ . +.
T Consensus 125 ~~~~~V~InGF-GRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liin 203 (477)
T PRK08289 125 IEPRDVVLYGF-GRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIAN 203 (477)
T ss_pred CCCceEEEECC-CHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEEC
Confidence 45899999999 99999999987643 567886642111 000 0 12
Q ss_pred C--eeccC--CHHhhhh-cCCCc--EEEEecCchhHHHHHHHHHH-cCCCEEEEecC
Q psy8894 72 D--LPVFN--TVKEARD-ATGAE--ATVIYVPPPGAAKAIHEALD-AEMPLIVCITE 120 (306)
Q Consensus 72 G--ip~y~--sl~el~~-~~~iD--lavi~vp~~~~~~~~~e~~~-~Gi~~vvi~t~ 120 (306)
| ++++. +.+++|= +.++| ++|.++..-...+-+..=++ .|+|.|++-++
T Consensus 204 g~~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP 260 (477)
T PRK08289 204 GNYIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAP 260 (477)
T ss_pred CEEEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCC
Confidence 2 22232 3566652 23588 88888877777766666666 78888775333
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=83.82 E-value=8.3 Score=36.78 Aligned_cols=88 Identities=10% Similarity=0.045 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-e-----EEEeeCCCC-----CCce--ec--------CeeccCC-HHhhhhcC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-K-----VVGGVSPGK-----GGKT--HL--------DLPVFNT-VKEARDAT 86 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~-----vv~~VnP~~-----~g~~--i~--------Gip~y~s-l~el~~~~ 86 (306)
+|.+|+|+|++|+.|......+...+. . -+..+|-+. .|.. +. .+.++.. .+++.
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--- 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK--- 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC---
Confidence 589999999999999876655554433 1 233555421 1111 11 1223322 34443
Q ss_pred CCcEEEEecCchh----------------HHHHHHHHHHcCC-CEEEEec
Q psy8894 87 GAEATVIYVPPPG----------------AAKAIHEALDAEM-PLIVCIT 119 (306)
Q Consensus 87 ~iDlavi~vp~~~----------------~~~~~~e~~~~Gi-~~vvi~t 119 (306)
+.|++|++..... ..++.++..+.+- .+++++.
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv 127 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVV 127 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 3899999743311 4556666767773 7766654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=83.79 E-value=31 Score=31.98 Aligned_cols=193 Identities=16% Similarity=0.177 Sum_probs=111.1
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHH-cCCe-EEE--eeCCCCC----Ccee-cCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIE-YGTK-VVG--GVSPGKG----GKTH-LDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~-~g~~-vv~--~VnP~~~----g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
-.++.+|.|.|+.|..|.-..+.|+. +|-+ ++- .+.|... |.-| .++-=|+++.++.-.+.+|-.+-+.
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfS-- 118 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFS-- 118 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhcccCCchhhhhhccccHHHhhcccccceeeeHH--
Confidence 56788999999988777766666655 4766 331 2445431 1111 1233455677777666688776543
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRS 177 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqS 177 (306)
.++....+.+++.++-. .-++...++ ++|+++++++.-|.++|-+-|....+.+-.-..-+|..|==||.-
T Consensus 119 ----ALLSAvGE~NVpLA~~V----NI~GvHNil-~vAa~~kL~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKV 189 (366)
T KOG2774|consen 119 ----ALLSAVGETNVPLALQV----NIRGVHNIL-QVAAKHKLKVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKV 189 (366)
T ss_pred ----HHHHHhcccCCceeeee----cchhhhHHH-HHHHHcCeeEeecccccccCCCCCCCCCCCeeeecCceeechhHH
Confidence 23445556777765421 123334444 478999999999999999988643322111112345555445432
Q ss_pred hh-hHHHHHHHHHhCCCc-----eEEEEec----CCCCCCCCCHHHHHHHhhc-------CCCccEEEEEEeeC
Q psy8894 178 GT-LTYEAVHQTTQVGLG-----QTLCVGI----GGDPFNGTNFIDCLEVFLK-------DPETKGIILIGEIG 234 (306)
Q Consensus 178 G~-~~~~~~~~~~~~g~g-----~s~~vs~----Gn~~~~dv~~~d~l~~l~~-------D~~t~~I~ly~E~~ 234 (306)
-+ +..+-+. .+.|+- |-..+|. |+. .|...+-|-+.+.+ -|+|+.=.||.|.-
T Consensus 190 HAEL~GEy~~--hrFg~dfr~~rfPg~is~~~pgggt--tdya~A~f~~Al~~gk~tCylrpdtrlpmmy~~dc 259 (366)
T KOG2774|consen 190 HAELLGEYFN--HRFGVDFRSMRFPGIISATKPGGGT--TDYAIAIFYDALQKGKHTCYLRPDTRLPMMYDTDC 259 (366)
T ss_pred HHHHHHHHHH--hhcCccceecccCcccccCCCCCCc--chhHHHHHHHHHHcCCcccccCCCccCceeehHHH
Confidence 21 1111111 233443 3445665 333 66667777666643 48999999998863
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=83.64 E-value=1.6 Score=34.31 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCcee-cCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGKTH-LDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~ 104 (306)
+.++|.|||. |+.+..-.+.|++.|.++. .+.|.. ..+.+ +--+-|+ +++. +.|+++.+++.+...+ +.
T Consensus 6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~-vis~~~~~~~~~i~~~~~~~~--~~l~---~~~lV~~at~d~~~n~~i~ 78 (103)
T PF13241_consen 6 KGKRVLVVGG-GPVAARKARLLLEAGAKVT-VISPEIEFSEGLIQLIRREFE--EDLD---GADLVFAATDDPELNEAIY 78 (103)
T ss_dssp TT-EEEEEEE-SHHHHHHHHHHCCCTBEEE-EEESSEHHHHTSCEEEESS-G--GGCT---TESEEEE-SS-HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EECCchhhhhhHHHHHhhhHH--HHHh---hheEEEecCCCHHHHHHHH
Confidence 4588999998 6655555667777888754 667762 00111 1112222 3332 2788888886655544 44
Q ss_pred HHHHHcCCC
Q psy8894 105 HEALDAEMP 113 (306)
Q Consensus 105 ~e~~~~Gi~ 113 (306)
++|.++|+.
T Consensus 79 ~~a~~~~i~ 87 (103)
T PF13241_consen 79 ADARARGIL 87 (103)
T ss_dssp HHHHHTTSE
T ss_pred HHHhhCCEE
Confidence 555556665
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=11 Score=37.89 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccC---CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFN---TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~---sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
..++|+|+|. |+.|....+.|++.|++++ +.|.+.... +-.|+.++. ..+.+ . ++|++|....-...-+
T Consensus 11 ~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~-~~D~~~~~~~~l~~~g~~~~~~~~~~~~l-~--~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 11 PGAPVLVAGA-GVTGRAVLAALTRFGARPT-VCDDDPDALRPHAERGVATVSTSDAVQQI-A--DYALVVTSPGFRPTAP 85 (488)
T ss_pred CCCeEEEEcC-CHHHHHHHHHHHHCCCEEE-EEcCCHHHHHHHHhCCCEEEcCcchHhHh-h--cCCEEEECCCCCCCCH
Confidence 3478999999 9999999998888999876 466432101 113555442 12223 2 3798877532222234
Q ss_pred HHHHHHHcCCC
Q psy8894 103 AIHEALDAEMP 113 (306)
Q Consensus 103 ~~~e~~~~Gi~ 113 (306)
.++.+.++|++
T Consensus 86 ~~~~a~~~gi~ 96 (488)
T PRK03369 86 VLAAAAAAGVP 96 (488)
T ss_pred HHHHHHHCCCc
Confidence 56666666655
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.50 E-value=2 Score=38.47 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhc-CCCcEE-EEecCchhHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDA-TGAEAT-VIYVPPPGAAKAIHEA 107 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~-~~iDla-vi~vp~~~~~~~~~e~ 107 (306)
.+++.|.|+++..|+...+.|.+.|++++ .+..+. ... +. .+++... ..+... .+.+.++.....++++
T Consensus 7 ~~~ilItGasggiG~~la~~l~~~G~~v~-~~~r~~--~~~---~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEEGAIPV-IFGRSA--PDD---EF---AEELRALQPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCCcEE-EEcCCh--hhH---HH---HHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 46899999999999999999999999865 333322 111 11 2233211 012221 2345555566666666
Q ss_pred HHc--CCCEEEEecCCC
Q psy8894 108 LDA--EMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~--Gi~~vvi~t~Gf 122 (306)
.+. ++..++. ..|.
T Consensus 78 ~~~~~~id~vi~-~ag~ 93 (258)
T PRK08628 78 VAKFGRIDGLVN-NAGV 93 (258)
T ss_pred HHhcCCCCEEEE-CCcc
Confidence 553 5787664 5554
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=83.33 E-value=10 Score=37.48 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
+.++|+|.|+ |+.|+...+.|.+.|.++++..|.
T Consensus 205 ~g~~VaIqGf-GnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 205 AGQTFVIQGF-GNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECC
Confidence 4579999998 999999999999999999876444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=83.32 E-value=4.5 Score=39.69 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeeccC-------CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVFN-------TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y~-------sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|+ |+.|+...+.|.+.|++++ .++++... ++ ..|++++. .+.++.- .+.|.++++++.+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~-vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVT-VIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGA-EDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCC-CcCCEEEEecCChH
Confidence 37999999 9999999999999999876 66553210 11 13444332 1333311 24999999998866
Q ss_pred HHHHH-HHHHHc-CCCEEEEec
Q psy8894 100 AAKAI-HEALDA-EMPLIVCIT 119 (306)
Q Consensus 100 ~~~~~-~e~~~~-Gi~~vvi~t 119 (306)
....+ ..+.+. +...+++-+
T Consensus 78 ~n~~~~~~~r~~~~~~~ii~~~ 99 (453)
T PRK09496 78 TNMVACQIAKSLFGAPTTIARV 99 (453)
T ss_pred HHHHHHHHHHHhcCCCeEEEEE
Confidence 65543 444454 666666544
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=83.31 E-value=2 Score=40.94 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce-------ecC--eeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT-------HLD--LPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~-------i~G--ip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
++++++|+|+ |.+++...+.+... ..+.+...|+.....+ -.| +.++.+.+++.+. .|+++.+||..
T Consensus 127 ~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~--aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEG--CDILVTTTPSR 203 (325)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhcc--CCEEEEecCCC
Confidence 4689999999 99999888776653 5555556666542111 124 4567789898875 99999999864
Q ss_pred hHHHHH-HHHHHcCCCEEEE
Q psy8894 99 GAAKAI-HEALDAEMPLIVC 117 (306)
Q Consensus 99 ~~~~~~-~e~~~~Gi~~vvi 117 (306)
. .++ .+.++.|.+..-+
T Consensus 204 ~--P~~~~~~l~~g~~v~~v 221 (325)
T TIGR02371 204 K--PVVKADWVSEGTHINAI 221 (325)
T ss_pred C--cEecHHHcCCCCEEEec
Confidence 3 333 5566778774443
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.24 E-value=11 Score=35.70 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC--eEEccCCCceecCccccccCCCCC
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS--RLIGPNCPGIIAPEQCKIGIMPGH 164 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi--~iiGPNc~Gi~~~~~~~~~~~~~~ 164 (306)
+-|+++--...+.+.+++..+.+.|.+--++.|++++.-+...+.+++ +++|+ .+|=...+|.+.......-.....
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L-~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~ 197 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKEL-RQSGIPVTVIVDSAVGAFMSRVDKVLVGADA 197 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHH-HHcCCceEEEechHHHHHHHhCCEEEECccc
Confidence 467777777889999999999999988777789999877655554444 67776 455455566665432211111222
Q ss_pred CCCCCCEEEEecChhhHHHHHHHHHhCCCceEE
Q psy8894 165 IHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197 (306)
Q Consensus 165 ~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~ 197 (306)
....| ++|+++|+...++. |++++..|--
T Consensus 198 I~~nG--~lvnkiGT~~lA~~--A~e~~~Pf~v 226 (301)
T COG1184 198 ILANG--ALVNKIGTSPLALA--ARELRVPFYV 226 (301)
T ss_pred eecCC--cEEeccchHHHHHH--HHHhCCCEEE
Confidence 34455 89999999987765 4677776644
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=83.21 E-value=7.9 Score=36.44 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|-.|+...+.|++.|++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999998754
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK10433 putative RNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=17 Score=32.98 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=40.9
Q ss_pred cEEEEEcCCCCCChHH--HHHHHHcCCeEEEeeCCCCCCce------------ecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFH--SKQAIEYGTKVVGGVSPGKGGKT------------HLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~--~~~l~~~g~~vv~~VnP~~~g~~------------i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
.+|+++.. ..++..+ .+.+..+|+.-+..|+|+....+ +...++|++++++... .+.++-++
T Consensus 3 i~vVLv~p-~~p~NiGaiaRam~nfG~~~L~lV~p~~~~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d--~~~vigtt 78 (228)
T PRK10433 3 LTIILVAP-ARAENVGAAARAMKTMGFSELRIVDSQAHLEPAARWVAHGSGDILDNAKVFDTLAEALHD--VDFTVATT 78 (228)
T ss_pred eEEEEEcC-CCCccHHHHHHHHHHCCCCEEEEeCCCCCCcHHHHHHhccHHHHhcCceEECCHHHHHHh--CCeEEEEc
Confidence 46888887 6667655 68999999986668999842111 2245667777777664 56555443
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.01 E-value=5.5 Score=38.45 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP 63 (306)
.||+|-|+ |+.|+.+.|.+.+. ++++++.-+|
T Consensus 3 ~kv~INGf-GRIGR~v~R~~~~~~~~~ivaiNd~ 35 (342)
T PTZ00353 3 ITVGINGF-GPVGKAVLFASLTDPLVTVVAVNDA 35 (342)
T ss_pred eEEEEECC-ChHHHHHHHHHHhcCCcEEEEecCC
Confidence 58999999 99999999986654 7888854443
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.85 E-value=8.8 Score=37.57 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..+|.|+|+ |-.|..+.++|...|+.-+..||+..
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 578999999 88999999999999998666888765
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=82.82 E-value=24 Score=32.26 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=55.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--e-ecCee--ccCCHHhhhhc-CCCcEEEEecCchhH-
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--T-HLDLP--VFNTVKEARDA-TGAEATVIYVPPPGA- 100 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~-i~Gip--~y~sl~el~~~-~~iDlavi~vp~~~~- 100 (306)
..+.++.|+|+ |..++...+.....||++. .+||+..-. . ..+.. .+...++.... ..-+.+|+.+.....
T Consensus 98 ~p~~~L~IfGa-G~va~~la~la~~lGf~V~-v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h~~D 175 (246)
T TIGR02964 98 PPAPHVVLFGA-GHVGRALVRALAPLPCRVT-WVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLTHDHALD 175 (246)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHhcCCCEEE-EEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEeCChHHH
Confidence 45679999999 8888888888888999986 788874100 0 01111 11222333221 124677777775443
Q ss_pred HHHHHHHH-HcCCCEEEEecC
Q psy8894 101 AKAIHEAL-DAEMPLIVCITE 120 (306)
Q Consensus 101 ~~~~~e~~-~~Gi~~vvi~t~ 120 (306)
.++++.++ +.....+=++-+
T Consensus 176 ~~~L~~aL~~~~~~YIG~lGS 196 (246)
T TIGR02964 176 LELCHAALRRGDFAYFGLIGS 196 (246)
T ss_pred HHHHHHHHhCCCCcEEEEeCC
Confidence 45677777 466666655443
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=1.5 Score=43.41 Aligned_cols=67 Identities=12% Similarity=0.119 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecC-ee--ccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLD-LP--VFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~G-ip--~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++|.|+|+ |.+|+...+.|.+.|...+..+|..... .. ..+ .. -|.++.+...+ .|++|-+|+..
T Consensus 180 ~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~ 253 (414)
T PRK13940 180 SSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVL 253 (414)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCC
Confidence 3578999999 9999999999999998866789987411 11 111 11 12333343333 78888887653
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=8.7 Score=34.08 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|..|+...+.|.+.|++++..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999997743
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.59 E-value=14 Score=36.32 Aligned_cols=82 Identities=20% Similarity=0.193 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--C---ce--ecCeeccC--CHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--G---KT--HLDLPVFN--TVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g---~~--i~Gip~y~--sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.++|.|+|+ |+.|....+.|.+.|++++ ..|.+.. . ++ -.|++++. .-.++..+ .+|++|....-...
T Consensus 5 ~k~v~v~G~-g~~G~s~a~~l~~~G~~V~-~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~-~~d~vV~s~gi~~~ 81 (447)
T PRK02472 5 NKKVLVLGL-AKSGYAAAKLLHKLGANVT-VNDGKPFSENPEAQELLEEGIKVICGSHPLELLDE-DFDLMVKNPGIPYT 81 (447)
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcC-cCCEEEECCCCCCC
Confidence 468999999 6699988999999999976 4453210 0 11 12555542 22333321 38877664311223
Q ss_pred HHHHHHHHHcCCCE
Q psy8894 101 AKAIHEALDAEMPL 114 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~ 114 (306)
...+++|.+.|++.
T Consensus 82 ~~~~~~a~~~~i~v 95 (447)
T PRK02472 82 NPMVEKALEKGIPI 95 (447)
T ss_pred CHHHHHHHHCCCcE
Confidence 35677787877764
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=82.54 E-value=6 Score=37.20 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=54.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCCc-----ee--cCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGGK-----TH--LDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g~-----~i--~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|.|.|++|-.|+...+.|.+.| ++++ .++...... +. ..+..+ .++.++.+. +|+++-
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~-~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~--iD~Vih 80 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKII-IYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG--VDYVVH 80 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEE-EEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhc--CCEEEE
Confidence 4789999999999999999888875 5665 333211000 00 112222 124444443 898886
Q ss_pred ecCc------------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 94 YVPP------------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 94 ~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+... ..+..+++.|.+.|++.++.+++.
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~ 126 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD 126 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5321 124467778888899888877753
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=82.50 E-value=6.3 Score=36.74 Aligned_cols=79 Identities=19% Similarity=0.118 Sum_probs=49.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC----c--------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP----P-------- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp----~-------- 97 (306)
.++|.|.|++|-.|+...+.|.+.|++++.. .... .. ...+.......++|.++=+.- +
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~-~~~~-----~~---~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~ 79 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG-SGRL-----EN---RASLEADIDAVKPTHVFNAAGVTGRPNVDWCESH 79 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe-cCcc-----CC---HHHHHHHHHhcCCCEEEECCcccCCCCchhhhhC
Confidence 4689999999999999999999999987532 1111 00 011222222224888773321 1
Q ss_pred ---------hhHHHHHHHHHHcCCCEEEE
Q psy8894 98 ---------PGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 98 ---------~~~~~~~~e~~~~Gi~~vvi 117 (306)
.....+++.|.+.|++.++.
T Consensus 80 p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 80 KVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 12345778888889987654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=82.41 E-value=7.2 Score=38.23 Aligned_cols=112 Identities=14% Similarity=0.077 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecCeecc-CC---HHhhhh--cCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLDLPVF-NT---VKEARD--ATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~Gip~y-~s---l~el~~--~~~iDlavi~vp~ 97 (306)
.+++|.|+|+ |+.|+...+.|.+.|++++ .|+....- + +..+++++ .+ .+.+.+ -.+.|.++++++.
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~-vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKEGYSVK-LIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 3688999999 9999999999999899865 55433200 0 11233322 22 222211 1248988888876
Q ss_pred hhHHH-HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCCCc
Q psy8894 98 PGAAK-AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNCPG 149 (306)
Q Consensus 98 ~~~~~-~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc~G 149 (306)
+..-- ....|.+.+++.++..+. . ++. . +..+..|+ .++.|..++
T Consensus 308 ~~~n~~~~~~~~~~~~~~ii~~~~-~-~~~-~----~~~~~~g~~~vi~p~~~~ 354 (453)
T PRK09496 308 DEANILSSLLAKRLGAKKVIALVN-R-PAY-V----DLVEGLGIDIAISPRQAT 354 (453)
T ss_pred cHHHHHHHHHHHHhCCCeEEEEEC-C-cch-H----HHHHhcCCCEEECHHHHH
Confidence 54333 233445567776654332 1 111 1 13456676 566776654
|
|
| >KOG0023|consensus | Back alignment and domain information |
|---|
Probab=82.20 E-value=12 Score=35.86 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=65.7
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
...+..-++++|+|+-| .|..+.+..+.+|++++ .++-... + =+|+.+..+.|.-++++-.....+.
T Consensus 176 ~~g~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~-vis~~~~-k----------keea~~~LGAd~fv~~~~d~d~~~~ 242 (360)
T KOG0023|consen 176 RSGLGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVT-VISTSSK-K----------KEEAIKSLGADVFVDSTEDPDIMKA 242 (360)
T ss_pred HcCCCCCcEEEEecCcc-cchHHHHHHHHhCcEEE-EEeCCch-h----------HHHHHHhcCcceeEEecCCHHHHHH
Confidence 44666788999999955 99999999999999987 5554320 1 1233333346777777756666666
Q ss_pred HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS 140 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi 140 (306)
+.++.+-++..+.+++ +..++... ++.|..|.
T Consensus 243 ~~~~~dg~~~~v~~~a----~~~~~~~~-~~lk~~Gt 274 (360)
T KOG0023|consen 243 IMKTTDGGIDTVSNLA----EHALEPLL-GLLKVNGT 274 (360)
T ss_pred HHHhhcCcceeeeecc----ccchHHHH-HHhhcCCE
Confidence 7777788888877663 22233333 35666663
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.16 E-value=3.4 Score=39.84 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=29.0
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
..+.+-++|+|+|+ |-.|..+.+..+..|.++++.
T Consensus 162 ~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~ 196 (339)
T COG1064 162 ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAI 196 (339)
T ss_pred cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEE
Confidence 35666789999999 788888999999999998743
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=82.07 E-value=7 Score=33.72 Aligned_cols=33 Identities=21% Similarity=0.045 Sum_probs=27.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+|+|+|+ |-+|....++|...|+.-+..+|+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5899999 99999999999999997555777764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=81.95 E-value=22 Score=35.66 Aligned_cols=111 Identities=21% Similarity=0.267 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--c-----eecCeeccC-CHH-hhhhcCCCcEEEEe--cCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--K-----THLDLPVFN-TVK-EARDATGAEATVIY--VPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~-----~i~Gip~y~-sl~-el~~~~~iDlavi~--vp~~ 98 (306)
.++|+|+|. |+.|....+.|.+.|.++. ..|-+..- . ...++++.. +.. +... .+|++|.. +|+.
T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G~~v~-v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~--~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLGAEVT-VSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLA--EFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEec-ccccHHHHHHHHHCCCeEE-EEcCCCCccchhhhhhhccCceeecCccchhccc--cCCEEEECCCCCCC
Confidence 578999999 9999999999999998865 44432211 0 123433322 111 2222 38888875 4333
Q ss_pred hHHHHHHHHHHcCCCEE---------------EEecCCCC-hhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 99 GAAKAIHEALDAEMPLI---------------VCITEGIP-QLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~v---------------vi~t~Gf~-e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
-+.++++.+.|++.+ +.+ ||-. -.....++..+.++.|. ..+|-|-
T Consensus 83 --~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaI-TGTNGKTTTTsli~~~l~~~G~~~~lgGNI 145 (448)
T COG0771 83 --HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAI-TGTNGKTTTTSLIAHLLKAAGLDALLGGNI 145 (448)
T ss_pred --CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEE-ECCCchHHHHHHHHHHHHhcCCCceecccc
Confidence 337788877777643 111 2221 11234455567788886 5666663
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.9 Score=42.68 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce----ecCe--eccCCHHhhhhcCCCcEEEEecCchh---
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT----HLDL--PVFNTVKEARDATGAEATVIYVPPPG--- 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~----i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~--- 99 (306)
+.+++.|+|| |.||....+.|.+.|+..+...|......+ -.|. --|..+.+...+ .|+++.+|.+..
T Consensus 177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~--~DvVissTsa~~~ii 253 (414)
T COG0373 177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAE--ADVVISSTSAPHPII 253 (414)
T ss_pred ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhh--CCEEEEecCCCcccc
Confidence 5789999999 999999999999999887778998762111 1231 122333333434 899998865432
Q ss_pred HHHHHHHHHHcC
Q psy8894 100 AAKAIHEALDAE 111 (306)
Q Consensus 100 ~~~~~~e~~~~G 111 (306)
..+.++++.+..
T Consensus 254 ~~~~ve~a~~~r 265 (414)
T COG0373 254 TREMVERALKIR 265 (414)
T ss_pred CHHHHHHHHhcc
Confidence 244556665543
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.7 Score=38.97 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
+.++|.|.|++|-.|+.+.+.|++.|++++...
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 458899999999999999999999999987543
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=81.75 E-value=6.7 Score=35.73 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
+|.|+|+ |-.|....++|...|+.-+..+|+..
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDT 33 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 5899999 88999999999999998666777764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=81.49 E-value=7.2 Score=38.69 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
.++|.|.|++|-.|+...+.|.+.|++++.
T Consensus 47 ~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 47 KKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 468999999999999999999999999763
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=81.47 E-value=8.7 Score=34.65 Aligned_cols=106 Identities=15% Similarity=0.196 Sum_probs=61.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe--EEEeeCCC----CCCc-----------eecC-eeccCCHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK--VVGGVSPG----KGGK-----------THLD-LPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~--vv~~VnP~----~~g~-----------~i~G-ip~y~sl~el~~~~~iDla 91 (306)
.++|.|+|+ |..|+.+.+.+.+.|.+ .++.+|.+ .... +..+ .++..++.+..+. +|++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~--~dvl 101 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKG--ADVF 101 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhc--CCEE
Confidence 478999999 99999999999888987 77899987 2111 0011 1122356555554 8999
Q ss_pred EEecCchhH-HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 92 VIYVPPPGA-AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 92 vi~vp~~~~-~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
|=++|+-.. ++.++...+. +.+..++ ...++. +. +.|++.|.+++..
T Consensus 102 IgaT~~G~~~~~~l~~m~~~--~ivf~ls-nP~~e~---~~-~~A~~~ga~i~a~ 149 (226)
T cd05311 102 IGVSRPGVVKKEMIKKMAKD--PIVFALA-NPVPEI---WP-EEAKEAGADIVAT 149 (226)
T ss_pred EeCCCCCCCCHHHHHhhCCC--CEEEEeC-CCCCcC---CH-HHHHHcCCcEEEe
Confidence 988864332 4555555432 2222222 322221 22 2466778764443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.42 E-value=26 Score=33.45 Aligned_cols=96 Identities=15% Similarity=-0.029 Sum_probs=56.5
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCC-CCceec------Ceecc---C--CHHhhhhcCCCcEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGK-GGKTHL------DLPVF---N--TVKEARDATGAEAT 91 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~-~g~~i~------Gip~y---~--sl~el~~~~~iDla 91 (306)
.-..+.+|+|+|++|+.|......+...+. +++ .+|.+. .|...+ ...+. . ++.+... +.|++
T Consensus 14 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~-L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~--~aDiV 90 (323)
T PLN00106 14 GGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELH-LYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALK--GADLV 90 (323)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEE-EEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcC--CCCEE
Confidence 344578999999999999888766665443 443 555432 221110 11222 1 2233333 38999
Q ss_pred EEecCc--h--------------hHHHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 92 VIYVPP--P--------------GAAKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 92 vi~vp~--~--------------~~~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
|++... . .+.++++.+.+.+.+++++..+...+
T Consensus 91 VitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD 139 (323)
T PLN00106 91 IIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVN 139 (323)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 987432 1 23456677778899998887776543
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.27 E-value=9.3 Score=34.53 Aligned_cols=80 Identities=13% Similarity=0.210 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE-EEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT-VIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla-vi~vp~~~~~~~~~e~~ 108 (306)
.+++.|.|+++..|+...+.+.+.|++++ .+..+. +. +.++... +++.. .+...++.+...++++.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~-~~~r~~--~~---------l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVY-GAARRV--DK---------MEDLASL-GVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeCCH--HH---------HHHHHhC-CCeEEEeeCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999976 444332 11 2222221 13332 34566677777777776
Q ss_pred Hc--CCCEEEEecCCCC
Q psy8894 109 DA--EMPLIVCITEGIP 123 (306)
Q Consensus 109 ~~--Gi~~vvi~t~Gf~ 123 (306)
+. ++..+++ ..|+.
T Consensus 70 ~~~~~id~li~-~ag~~ 85 (273)
T PRK06182 70 AEEGRIDVLVN-NAGYG 85 (273)
T ss_pred HhcCCCCEEEE-CCCcC
Confidence 54 6887664 55653
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.25 E-value=4.5 Score=38.21 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+-++|+|+|-|+.+|+.....|.+.|+++. ..|.+. . +++++... .|+++.+++....
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~rT--~---------~l~e~~~~--ADIVIsavg~~~~ 214 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHSRT--R---------DLPAVCRR--ADILVAAVGRPEM 214 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECCCC--C---------CHHHHHhc--CCEEEEecCChhh
Confidence 358999999999999999999999999865 454332 1 46777765 8999999988653
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=80.87 E-value=5.5 Score=37.06 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC--CeEEEeeC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG--TKVVGGVS 62 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g--~~vv~~Vn 62 (306)
+|.|.|++|-.|+...+.|.+.| .++++.+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R 33 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVR 33 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEc
Confidence 48899999999999999999887 56765553
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.9 Score=40.27 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----ec----Cee--ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----HL----DLP--VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----i~----Gip--~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.++|.|+|+ |..|+.+...|.+.|.+-+..+|+.... +. +. ... .+.++.+...+ .|++|-+||.
T Consensus 126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCC--CCEEEECCcC
Confidence 3578999999 8899999999999998756688876411 00 00 011 12334443333 8999999875
Q ss_pred h
Q psy8894 98 P 98 (306)
Q Consensus 98 ~ 98 (306)
-
T Consensus 203 G 203 (284)
T PRK12549 203 G 203 (284)
T ss_pred C
Confidence 4
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=80.67 E-value=6 Score=38.98 Aligned_cols=91 Identities=10% Similarity=-0.007 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCceecC----eeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGKTHLD----LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~~i~G----ip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+|.++|=...-++...+.+.+.+.. .+..=|+.+ ....| -.+|.+++++..+ -|..|++||+++-.+++++
T Consensus 27 ~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h--~~l~G~~~id~~~~~~~~i~g~--WdtlILavtaDAY~~VL~q 102 (429)
T PF10100_consen 27 RVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQH--QALSGECTIDHVFQDYEEIEGE--WDTLILAVTADAYLDVLQQ 102 (429)
T ss_pred eeeeecCcchhHHHHHHHHHhCCCEEEEeecchhh--hhhcCeEEhhHhhcCHHHhccc--ccEEEEEechHHHHHHHHh
Confidence 4555543222233334555554443 232335544 22333 2478889999887 9999999999999999887
Q ss_pred HHH---cCCCEEEEecCCCChhH
Q psy8894 107 ALD---AEMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~---~Gi~~vvi~t~Gf~e~~ 126 (306)
.-. .++|.++.+++.|.-.-
T Consensus 103 l~~~~L~~vk~iVLvSPtfGS~~ 125 (429)
T PF10100_consen 103 LPWEVLKRVKSIVLVSPTFGSHL 125 (429)
T ss_pred cCHHHHhhCCEEEEECcccchHH
Confidence 654 57999999999886544
|
|
| >cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor | Back alignment and domain information |
|---|
Probab=80.67 E-value=6.7 Score=38.26 Aligned_cols=94 Identities=9% Similarity=0.001 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCCCChHHHH----HHHHcCCeEEEe--eCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSK----QAIEYGTKVVGG--VSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~----~l~~~g~~vv~~--VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+-++|+++...+.-|+...+ .+.+.|..++.- +.++. .+.......+..+..+....++|++|++.....+..
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~-~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~ 249 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASL-SDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFL 249 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCcc-CcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHH
Confidence 56789999776666766644 445557765432 33321 011001122333334333346999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+++++.+.|++.+|+.+.|..
T Consensus 250 l~~~a~~~g~~~~wigs~~w~ 270 (403)
T cd06361 250 LFNKAIERNINKVWIASDNWS 270 (403)
T ss_pred HHHHHHHhCCCeEEEEECccc
Confidence 999999999999999888774
|
This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. |
| >PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length | Back alignment and domain information |
|---|
Probab=80.44 E-value=8.1 Score=30.16 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=44.8
Q ss_pred CCeEEEeeCCCCCCceecCeeccCC-HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHH
Q psy8894 54 GTKVVGGVSPGKGGKTHLDLPVFNT-VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKH 132 (306)
Q Consensus 54 g~~vv~~VnP~~~g~~i~Gip~y~s-l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~ 132 (306)
+.+++.+-+... ..+..+.+... ++++.+...++-++++.... .+++..|+.+++..++ +|.|...++. . .
T Consensus 7 ~~~~l~g~~~~~--~~~~~v~v~a~~~~~~~~~~~~~~lvIt~gdR--~di~~~a~~~~i~~iI-ltg~~~~~~~--v-~ 78 (105)
T PF07085_consen 7 DGEVLNGGEELD--RRVGKVVVGAMSLSDFLEYLKPGDLVITPGDR--EDIQLAAIEAGIACII-LTGGLEPSEE--V-L 78 (105)
T ss_dssp T-EEEE--TTS----EESEEEE-SS-HHHHHHCHHTTEEEEEETT---HHHHHHHCCTTECEEE-EETT----HH--H-H
T ss_pred CCEEEECCcccc--eEEeeEEEEECCHHHHHhhcCCCeEEEEeCCc--HHHHHHHHHhCCCEEE-EeCCCCCCHH--H-H
Confidence 556554443332 34555666654 66665532345555553333 7889999999999876 6888755432 2 2
Q ss_pred HHHHhcCCeEEc
Q psy8894 133 RLIRQSKSRLIG 144 (306)
Q Consensus 133 ~~ar~~gi~iiG 144 (306)
++|++.++.++.
T Consensus 79 ~la~~~~i~vi~ 90 (105)
T PF07085_consen 79 ELAKELGIPVIS 90 (105)
T ss_dssp HHHHHHT-EEEE
T ss_pred HHHHHCCCEEEE
Confidence 478888877664
|
It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=80.32 E-value=10 Score=35.71 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCC---Cce-----------ec-CeeccCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKG---GKT-----------HL-DLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~---g~~-----------i~-Gip~y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......+...|. +++ .+|.... |.. .. -+....+++++. +.|++|++
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv-lvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~---~aDiVIit 76 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTA---NSDIVVIT 76 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE-EEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhC---CCCEEEEc
Confidence 58999999 9999888777777665 644 5665321 110 01 122335677753 38999999
Q ss_pred cCc----------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPP----------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~----------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++. +.+.+++++..+.+-+.++++-+
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~t 118 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 773 23444566666666666665444
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.23 E-value=11 Score=41.24 Aligned_cols=117 Identities=16% Similarity=0.094 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCC-----------HHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNT-----------VKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~s-----------l~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|-..|..-+..+|..........-.+..+ +.+...+.+|++=|.+.+..
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~ 410 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEG 410 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecC
Confidence 578999999 778999999999988875556666542111111111111 11111122356666555555
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~G 149 (306)
...+.+++.+ .++..|+..+..|+. +....+.+.|+++++.++--.+.|
T Consensus 411 I~~en~~~fl-~~~DiVVDa~D~~~~-~~rr~l~~~c~~~~IP~I~ag~~G 459 (989)
T PRK14852 411 VAAETIDAFL-KDVDLLVDGIDFFAL-DIRRRLFNRALELGIPVITAGPLG 459 (989)
T ss_pred CCHHHHHHHh-hCCCEEEECCCCccH-HHHHHHHHHHHHcCCCEEEeeccc
Confidence 5555566555 367766544444432 222233345778887777555544
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=80.21 E-value=2.8 Score=36.10 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=32.4
Q ss_pred CHHHHHHHhhcCCCccEEEEEEeeCC----------------CCCCCcEEEEEecCCC
Q psy8894 210 NFIDCLEVFLKDPETKGIILIGEIGG----------------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 210 ~~~d~l~~l~~D~~t~~I~ly~E~~~----------------~~~~KPVvvlk~Grs~ 251 (306)
.+.+.++.+.+||++|+|++.+.+.+ .+.+||||++--|...
T Consensus 26 ~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~ 83 (177)
T cd07014 26 TTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAA 83 (177)
T ss_pred HHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence 34455566678999999999998765 2468999999887764
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.12 E-value=5.9 Score=39.09 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=49.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---cee----cCeeccC---CHHhhhhcCCCcEEEEe-
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTH----LDLPVFN---TVKEARDATGAEATVIY- 94 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i----~Gip~y~---sl~el~~~~~iDlavi~- 94 (306)
++.....|+|+|. |..|....+.|.+.|+++. +.|.+... +++ .|++++. +.+.+. + +|++|+.
T Consensus 2 ~~~~~~~~~v~G~-G~sG~s~a~~L~~~G~~v~-~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-~--~d~vV~sp 76 (448)
T PRK03803 2 LMQSDGLHIVVGL-GKTGLSVVRFLARQGIPFA-VMDSREQPPGLDTLAREFPDVELRCGGFDCELLV-Q--ASEIIISP 76 (448)
T ss_pred ccccCCeEEEEee-cHhHHHHHHHHHhCCCeEE-EEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhc-C--CCEEEECC
Confidence 3455678999999 8899888889999999875 55543211 111 2666643 333343 3 7887664
Q ss_pred -cCchhHHHHHHHHHHcCCC
Q psy8894 95 -VPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 95 -vp~~~~~~~~~e~~~~Gi~ 113 (306)
+|+. -+.+.++.++|++
T Consensus 77 ~i~~~--~p~~~~a~~~~i~ 94 (448)
T PRK03803 77 GLALD--TPALRAAAAMGIE 94 (448)
T ss_pred CCCCC--CHHHHHHHHCCCc
Confidence 3322 2345555555655
|
|
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=80.06 E-value=3 Score=37.16 Aligned_cols=42 Identities=26% Similarity=0.546 Sum_probs=33.3
Q ss_pred CCHHHHHHHhhcCCCccEEEEEEeeCC-------------C--CCCCcEEEEEecCC
Q psy8894 209 TNFIDCLEVFLKDPETKGIILIGEIGG-------------G--PNAKPVVSFIAGIT 250 (306)
Q Consensus 209 v~~~d~l~~l~~D~~t~~I~ly~E~~~-------------~--~~~KPVvvlk~Grs 250 (306)
-++.+.|+.+.+||++++|++.+++.+ . ..+||||++--|..
T Consensus 28 ~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a 84 (214)
T cd07022 28 EGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLA 84 (214)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 356677778889999999999998865 1 12799999998864
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=80.05 E-value=6.7 Score=36.88 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=52.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
-++|+|+|-|+-+|+-....|++.|.++. ..+.+. +++++...+ .|++|.+++.....+ .+.++
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~t-----------~~l~~~~~~--ADIVI~avg~~~~v~--~~~ik 221 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSRT-----------RNLAEVARK--ADILVVAIGRGHFVT--KEFVK 221 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCCC-----------CCHHHHHhh--CCEEEEecCccccCC--HHHcc
Confidence 58999999999999999999999999864 334332 157777665 999999998766533 23344
Q ss_pred cCCCEEEEecCCCC
Q psy8894 110 AEMPLIVCITEGIP 123 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~ 123 (306)
.| .++ +--|++
T Consensus 222 ~G--avV-IDvgin 232 (284)
T PRK14179 222 EG--AVV-IDVGMN 232 (284)
T ss_pred CC--cEE-EEecce
Confidence 44 233 345553
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 306 | ||||
| 2fp4_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 1e-102 | ||
| 2fpg_A | 305 | Crystal Structure Of Pig Gtp-Specific Succinyl-Coa | 1e-102 | ||
| 1eud_A | 311 | Crystal Structure Of Phosphorylated Pig Heart, Gtp- | 1e-102 | ||
| 1euc_A | 311 | Crystal Structure Of Dephosphorylated Pig Heart, Gt | 1e-102 | ||
| 1jkj_A | 288 | E. Coli Scs Length = 288 | 1e-74 | ||
| 2scu_A | 288 | A Detailed Description Of The Structure Of Succinyl | 1e-74 | ||
| 1cqi_A | 286 | Crystal Structure Of The Complex Of Adp And Mg2+ Wi | 2e-74 | ||
| 2nu7_A | 288 | C123as Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-73 | ||
| 2nua_A | 288 | C123av Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-73 | ||
| 2nu8_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-73 | ||
| 2nu6_A | 288 | C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Le | 1e-73 | ||
| 2nu9_A | 288 | C123at Mutant Of E. Coli Succinyl-Coa Synthetase Or | 2e-73 | ||
| 2yv2_A | 297 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 2e-50 | ||
| 2yv1_A | 294 | Crystal Structure Of Succinyl-Coa Synthetase Alpha | 2e-46 | ||
| 3ufx_A | 296 | Thermus Aquaticus Succinyl-coa Synthetase In Comple | 2e-43 | ||
| 1oi7_A | 288 | The Crystal Structure Of Succinyl-Coa Synthetase Al | 5e-43 | ||
| 3pff_A | 829 | Truncated Human Atp-Citrate Lyase With Adp And Tart | 5e-07 | ||
| 3mwe_B | 335 | Truncated Human Atp-Citrate Lyase With Tartrate Bou | 8e-07 | ||
| 3mwd_B | 334 | Truncated Human Atp-Citrate Lyase With Citrate Boun | 2e-05 |
| >pdb|2FP4|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gtp Length = 305 | Back alignment and structure |
|
| >pdb|2FPG|A Chain A, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa Synthetase In Complex With Gdp Length = 305 | Back alignment and structure |
|
| >pdb|1EUD|A Chain A, Crystal Structure Of Phosphorylated Pig Heart, Gtp-Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|1EUC|A Chain A, Crystal Structure Of Dephosphorylated Pig Heart, Gtp- Specific Succinyl-Coa Synthetase Length = 311 | Back alignment and structure |
|
| >pdb|1JKJ|A Chain A, E. Coli Scs Length = 288 | Back alignment and structure |
|
| >pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa Synthetase From Escherichia Coli Length = 288 | Back alignment and structure |
|
| >pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With Dephosphorylated E. Coli Succinyl-Coa Synthetase Length = 286 | Back alignment and structure |
|
| >pdb|2NU7|A Chain A, C123as Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NUA|A Chain A, C123av Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU8|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU6|A Chain A, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase Length = 288 | Back alignment and structure |
|
| >pdb|2NU9|A Chain A, C123at Mutant Of E. Coli Succinyl-Coa Synthetase Orthorhombic Crystal Form Length = 288 | Back alignment and structure |
|
| >pdb|2YV2|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Aeropyrum Pernix K1 Length = 297 | Back alignment and structure |
|
| >pdb|2YV1|A Chain A, Crystal Structure Of Succinyl-Coa Synthetase Alpha Chain From Methanocaldococcus Jannaschii Dsm 2661 Length = 294 | Back alignment and structure |
|
| >pdb|3UFX|A Chain A, Thermus Aquaticus Succinyl-coa Synthetase In Complex With Gdp-mn2+ Length = 296 | Back alignment and structure |
|
| >pdb|1OI7|A Chain A, The Crystal Structure Of Succinyl-Coa Synthetase Alpha Subunit From Thermus Thermophilus Length = 288 | Back alignment and structure |
|
| >pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate Bound Length = 829 | Back alignment and structure |
|
| >pdb|3MWE|B Chain B, Truncated Human Atp-Citrate Lyase With Tartrate Bound Length = 335 | Back alignment and structure |
|
| >pdb|3MWD|B Chain B, Truncated Human Atp-Citrate Lyase With Citrate Bound Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* Length = 305 | Back alignment and structure |
|---|
Score = 545 bits (1406), Expect = 0.0
Identities = 216/303 (71%), Positives = 257/303 (84%), Gaps = 15/303 (4%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA+EYGT +VGG +PGKGGKTHL LPVFN
Sbjct: 2 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 61
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 62 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 121
Query: 138 SKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTL 197
K+RLIGPNCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+L
Sbjct: 122 GKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSL 181
Query: 198 CVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---------------GPNAKPV 242
CVGIGGDPFNGT+F DCLE+FL DP T+GIILIGEIGG GP +KPV
Sbjct: 182 CVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPV 241
Query: 243 VSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
VSFIAG+TAPPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++
Sbjct: 242 VSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEK 301
Query: 303 LNL 305
+
Sbjct: 302 RKM 304
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} Length = 297 | Back alignment and structure |
|---|
Score = 522 bits (1346), Expect = 0.0
Identities = 137/289 (47%), Positives = 196/289 (67%), Gaps = 14/289 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA-RDA 85
+ S+++V+ QG TG++G+FH+K +EYGTKVV GV+PGKGG +PV+++VKEA +
Sbjct: 10 VDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEH 69
Query: 86 TGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145
++++VP P A A++EA+DA + L+V ITEGIP D ++ + RQ + +IGP
Sbjct: 70 PEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYA-RQKGATIIGP 128
Query: 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP 205
NCPG I P Q K+GIMPGHI + G V VVSRSGTLTYE + T+ G+GQ+ +GIGGDP
Sbjct: 129 NCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDP 188
Query: 206 FNGTNFIDCLEVFLKDPETKGIILIGEIGG------------GPNAKPVVSFIAGITAPP 253
G +F + L++F +DP+T+ ++LIGEIGG G KPV+++IAG TAPP
Sbjct: 189 IVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTAPP 248
Query: 254 GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
+RMGHAGAII G G + K+ AL +AGV V +P ++ + K ++R
Sbjct: 249 EKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALRR 297
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Length = 288 | Back alignment and structure |
|---|
Score = 521 bits (1344), Expect = 0.0
Identities = 178/286 (62%), Positives = 212/286 (74%), Gaps = 12/286 (4%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTV+EA AT
Sbjct: 4 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAAT 63
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN 146
GA A+VIYVP P +I EA+DA + LI+ ITEGIP LDM+ VK +L ++ R+IGPN
Sbjct: 64 GATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIGPN 122
Query: 147 CPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPF 206
PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGGDP
Sbjct: 123 TPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPI 182
Query: 207 NGTNFIDCLEVFLKDPETKGIILIGEIGGGP-----------NAKPVVSFIAGITAPPGR 255
G+NFID LE+F KDP+T+ I++IGEIGG KPVV +IAG+TAP G+
Sbjct: 183 PGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGK 242
Query: 256 RMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301
RMGHAGAII+GGKG A +K ALE AGV RS A +G L +K
Sbjct: 243 RMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK 288
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} Length = 294 | Back alignment and structure |
|---|
Score = 520 bits (1342), Expect = 0.0
Identities = 137/292 (46%), Positives = 189/292 (64%), Gaps = 11/292 (3%)
Query: 21 TRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVK 80
+ L +K I QG TG+QG+FH+K+ +E GTK+VGGV+PGKGG+ +PVF+TVK
Sbjct: 4 RDKMILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVK 63
Query: 81 EARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS 140
EA T A A+VI+VP P A A+ EA+DA + LIV ITE IP D ++ +
Sbjct: 64 EAVKETDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYA-EDVGV 122
Query: 141 RLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVG 200
++IGPN PGI +P+ K+GI+P + + G VG+VSRSGTLTYE HQ + G G + CVG
Sbjct: 123 KIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVG 182
Query: 201 IGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGGG----------PNAKPVVSFIAGIT 250
IGGDP G + + L++F KD ET+ I++IGEIGGG KPV+ +IAG +
Sbjct: 183 IGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEKMKKPVIGYIAGQS 242
Query: 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKR 302
AP G+RMGHAGAI+ GKG A+ K+ ALE+AG V ++ + + L + +
Sbjct: 243 APEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILGK 294
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 Length = 288 | Back alignment and structure |
|---|
Score = 515 bits (1328), Expect = 0.0
Identities = 145/282 (51%), Positives = 189/282 (67%), Gaps = 12/282 (4%)
Query: 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAE 89
+++V+ QG TG++G FH+KQ + YGTK+V GV+PGKGG L +PV++TVKEA +
Sbjct: 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVD 66
Query: 90 ATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPG 149
A++I+VP P AA A EA A +PLIV ITEGIP LDMV+ + + SRLIG NCPG
Sbjct: 67 ASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIGGNCPG 125
Query: 150 IIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGT 209
II+ E+ KIGIMPGH+ +RG VG++SRSGTLTYEA +Q GLG T VGIGGDP GT
Sbjct: 126 IISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGT 185
Query: 210 NFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMG 258
F D L +F +DPET+ ++LIGEIGG KPVV FI G +AP G+RMG
Sbjct: 186 TFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMG 245
Query: 259 HAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300
HAGAII G G + K+ A +AG+ V + ++ + K +
Sbjct: 246 HAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* Length = 334 | Back alignment and structure |
|---|
Score = 436 bits (1124), Expect = e-155
Identities = 84/313 (26%), Positives = 130/313 (41%), Gaps = 37/313 (11%)
Query: 27 LTSKSKVICQGFTGK--QGTFHSKQAIEY-GTKVVGGVSPGKG--------GKTHLDLPV 75
+ +K I G + QG V V P G G + +PV
Sbjct: 7 FSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPV 66
Query: 76 FNTVKEA-RDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHR 133
F + +A R + + + A + E ++ A++ I I EGIP+ K+ +
Sbjct: 67 FKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKK 126
Query: 134 LIRQSKSRLIGPNCPGIIAPEQCKIG--------IMPGHIHQRGCVGVVSRSGTLTYEAV 185
Q +IGP G I P KIG I+ +++ G V VSRSG ++ E
Sbjct: 127 A-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSRSGGMSNELN 185
Query: 186 HQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---------- 235
+ ++ G V IGGD + G+ F+D + + P K I+++GEIGG
Sbjct: 186 NIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICRGI 245
Query: 236 --GPNAKPVVSFIAGITA---PPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPA 290
G KP+V + G A + GHAGA + A K AL++AGV V RS
Sbjct: 246 KEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFD 305
Query: 291 QMGNELLKEMKRL 303
++G + + L
Sbjct: 306 ELGEIIQSVYEDL 318
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} Length = 829 | Back alignment and structure |
|---|
Score = 421 bits (1084), Expect = e-143
Identities = 83/322 (25%), Positives = 130/322 (40%), Gaps = 37/322 (11%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGK--QGTFHSKQAIEY-GTKVVGGVSPGKGGKT----- 69
+ + +K I G + QG V V P G
Sbjct: 484 SLQGKSTTLFSRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYW 543
Query: 70 ---HLDLPVFNTVKEA-RDATGAEATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQ 124
+ +PVF + +A R + + + A + E ++ A++ I I EGIP+
Sbjct: 544 GHKEILIPVFKNMADAMRKHPEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPE 603
Query: 125 LDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIG--------IMPGHIHQRGCVGVVSR 176
K+ + Q +IGP G I P KIG I+ +++ G V VSR
Sbjct: 604 ALTRKLIKKA-DQKGVTIIGPATVGGIKPGCFKIGNTGGMLDNILASKLYRPGSVAYVSR 662
Query: 177 SGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG- 235
SG ++ E + ++ G V IGGD + G+ F+D + + P K I+++GEIGG
Sbjct: 663 SGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGT 722
Query: 236 -----------GPNAKPVVSFIAGITA---PPGRRMGHAGAIISGGKGGAQDKIDALEKA 281
G KP+V + G A + GHAGA + A K AL++A
Sbjct: 723 EEYKICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEA 782
Query: 282 GVIVTRSPAQMGNELLKEMKRL 303
GV V RS ++G + + L
Sbjct: 783 GVFVPRSFDELGEIIQSVYEDL 804
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} Length = 480 | Back alignment and structure |
|---|
Score = 310 bits (795), Expect = e-103
Identities = 53/277 (19%), Positives = 101/277 (36%), Gaps = 32/277 (11%)
Query: 49 QAIEYGTKVVGGVSPGKGGKTHLD-LPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107
Q +E K ++ G G L + +++ + A +I V AA+ ++A
Sbjct: 2 QQLEEALK---QLAQGSGSSQALTQVRRWDSACQK--LPDANLALISVAGEYAAELANQA 56
Query: 108 LDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQ 167
LD + ++ ++ + D +++K R R+ ++GP+C + + ++
Sbjct: 57 LDRNLN-VMMFSDNVTLEDEIQLKTRA-REKGLLVMGPDCGTSMIA---GTPLAFANVMP 111
Query: 168 RGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG----DPFNGTNFIDCLEVFLKDPE 223
G +GV+ SGT E Q G G T +G+GG G + + LE+ D +
Sbjct: 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEK 171
Query: 224 TKGIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMG--HAGAIISGG-KG 269
++ + + + KP V+ G T R A ++
Sbjct: 172 SEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLA 231
Query: 270 GAQDKIDALEKAGVIVTRSPAQM---GNELLKEMKRL 303
++ A A V+ G L E L
Sbjct: 232 CLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGL 268
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Length = 457 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 9e-15
Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 38/225 (16%)
Query: 92 VIYVPPPGAAKAIHEALDAEMPLIVCIT--------EGIPQLDMVKVKHRLIRQSKSRLI 143
+I VP + + + + +V IT EG + + + + R+I
Sbjct: 69 IIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELV---EIAHKYGMRII 125
Query: 144 GPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGG 203
GPNC GI+ + + ++G V +S+SG L V++T + +G + + +G
Sbjct: 126 GPNCVGIMNTHV-DLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVG- 183
Query: 204 DPFNGT--NFIDCLEVFLKDPETKGIILIGE-IGGGPN----------AKPVVSFIAGIT 250
N +F + +E E K I L E + G KP+++ AG +
Sbjct: 184 ---NMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKS 240
Query: 251 APPGRR--MGHAGAIISGGKGGAQDKIDA-LEKAGVIVTRSPAQM 292
G R H G++ G+ +A +++GV+V + +M
Sbjct: 241 E-SGARAASSHTGSLA-----GSWKIYEAAFKQSGVLVANTIDEM 279
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} Length = 145 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 8/103 (7%)
Query: 51 IEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDA 110
++ G V+ VSP GKT L + T+ + + + ++ A EA+
Sbjct: 37 LDQGYHVIP-VSPKVAGKTLLGQQGYATLADVPEKV--DMVDVFRNSEAAWGVAQEAIAI 93
Query: 111 EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153
+ + G+ L R++ ++ CP I P
Sbjct: 94 GAKTLW-LQLGVINEQAAV----LAREAGLSVVMDRCPAIELP 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 100.0 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 100.0 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 100.0 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 100.0 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 100.0 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 100.0 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 100.0 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 100.0 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 100.0 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 99.93 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 99.92 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 99.92 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 99.91 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 99.39 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 99.29 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 99.24 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 99.16 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 99.16 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 99.08 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 98.92 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 98.88 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.86 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 98.79 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 98.79 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.76 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 98.74 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.73 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.73 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.73 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.67 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.67 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.66 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.65 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.65 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.65 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.65 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.64 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.63 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.63 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.63 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.63 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.63 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 98.62 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.61 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.6 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.6 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.58 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 98.58 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.57 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.57 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.57 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.56 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.56 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.56 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.55 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.55 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.55 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.54 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.52 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.5 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.48 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.48 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.48 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.45 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.44 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.43 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.37 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.36 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.36 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.33 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 98.28 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 98.28 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.28 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 98.24 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 98.15 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.09 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 98.03 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 98.02 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 97.84 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.79 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.76 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 97.76 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 97.74 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 97.73 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 97.71 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.68 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 97.68 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.68 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 97.67 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.66 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.64 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.61 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 97.6 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 97.6 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.58 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 97.57 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 97.56 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 97.51 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 97.5 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 97.46 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.45 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 97.45 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.44 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 97.39 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 97.39 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 97.39 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 97.39 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.38 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 97.35 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.34 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 97.34 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 97.33 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.32 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.31 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.3 | |
| 3ufx_B | 397 | Succinyl-COA synthetase beta subunit; ATP-grAsp fo | 97.28 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 97.28 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 97.27 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 97.27 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 97.24 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.22 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.22 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.22 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.21 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 97.21 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 97.21 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 97.2 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.2 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 97.19 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 97.19 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.19 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 97.19 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 97.18 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 97.17 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.16 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.14 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 97.14 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 97.13 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 97.13 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.12 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 97.12 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.11 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 97.09 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.08 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 97.07 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 97.02 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.02 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.93 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.92 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 96.92 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.92 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 96.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 96.89 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.88 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.87 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.84 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.81 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 96.78 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 96.74 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.73 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.71 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 96.71 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 96.7 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.66 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 96.65 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 96.63 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.59 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 96.57 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.55 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 96.54 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 96.53 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.51 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.45 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 96.44 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 96.43 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 96.43 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 96.43 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.42 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 96.42 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.42 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.4 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 96.4 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 96.39 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 96.38 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.38 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.38 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 96.37 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 96.36 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.36 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 96.33 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 96.33 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 96.31 | |
| 2nu8_B | 388 | SCS-beta, succinyl-COA synthetase beta chain; citr | 96.3 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.29 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.29 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.28 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 96.26 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.24 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 96.24 | |
| 2fp4_B | 395 | Succinyl-COA ligase [GDP-forming] beta-chain, mito | 96.19 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 96.17 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.16 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 96.16 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.12 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.11 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.09 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.08 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.08 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 96.06 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.05 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 95.03 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 96.03 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 96.02 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 96.02 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 95.93 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 95.91 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.91 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 95.87 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 95.87 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.87 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 95.86 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 95.85 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 95.82 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 95.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 95.81 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 95.8 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 95.78 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.78 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 95.75 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 95.74 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 95.73 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 95.69 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.69 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 95.64 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 95.64 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 95.63 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 95.62 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 95.62 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 95.61 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 95.57 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.56 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.53 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 95.48 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 95.47 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 95.46 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 95.46 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.45 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 95.45 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 95.44 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.43 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 95.43 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 95.39 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 95.34 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 95.33 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.33 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 95.33 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 95.32 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 95.32 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.3 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 95.29 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 95.24 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 95.22 | |
| 2g6t_A | 306 | Uncharacterized protein, homolog HI1244 from haemo | 95.19 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 95.18 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 95.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.15 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 95.14 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.1 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 95.08 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 95.01 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 95.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 94.97 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.96 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 94.94 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.92 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 94.92 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 94.91 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 94.87 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.84 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 94.81 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 94.8 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 94.8 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 94.76 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 94.75 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.75 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 94.74 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 94.68 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 94.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 94.67 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 94.64 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 94.61 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 94.56 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 94.55 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 94.49 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.47 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.4 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 94.36 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 94.35 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 94.27 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 94.14 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 94.05 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.0 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 93.97 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 93.94 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.91 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 93.9 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 93.89 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 93.82 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 93.79 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.74 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 93.72 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 93.7 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.69 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 93.63 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 93.62 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 93.6 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 93.52 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.48 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 93.47 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 93.39 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 93.3 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 93.29 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 93.04 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 92.96 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 92.96 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 92.82 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 92.73 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 92.66 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 92.64 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 92.6 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 92.56 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 92.54 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 92.48 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 92.39 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 92.37 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 92.29 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 92.22 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 92.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 91.95 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 91.88 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 91.87 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 91.78 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 91.74 | |
| 1gr0_A | 367 | Inositol-3-phosphate synthase; isomerase, oxidored | 91.54 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 91.44 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 91.38 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 91.17 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 91.07 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 90.77 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 90.72 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 90.55 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 90.49 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 90.47 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 90.45 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 90.24 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 90.07 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 89.87 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.83 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 89.78 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 89.73 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 89.67 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 89.66 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 89.59 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 89.58 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 89.51 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 89.39 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 89.34 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 89.17 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 89.04 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 89.04 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 88.95 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 88.34 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 88.32 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 88.26 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 88.19 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.9 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 87.85 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 87.76 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 87.44 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 87.37 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 87.34 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 87.21 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 86.98 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 86.97 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 86.9 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 86.63 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 86.6 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 86.46 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 86.4 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 86.37 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.27 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 86.13 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 85.88 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 85.82 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 85.46 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 85.41 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 85.26 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 85.14 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 85.03 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 85.0 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 84.86 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 84.77 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 84.75 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 84.63 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 84.58 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 84.49 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 84.38 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 84.21 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 84.13 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 84.13 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 84.11 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 83.95 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 83.94 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 83.62 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 83.52 | |
| 3vot_A | 425 | L-amino acid ligase, BL00235; ATP-grAsp motif, ATP | 83.37 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 83.36 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 83.31 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 83.27 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 82.92 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 82.77 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 82.73 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 82.52 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 82.49 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 82.39 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 82.29 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 81.91 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 81.89 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 81.8 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 81.59 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 81.23 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 81.05 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 80.55 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 80.54 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 80.21 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 80.1 |
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-70 Score=509.85 Aligned_cols=288 Identities=72% Similarity=1.228 Sum_probs=261.6
Q ss_pred cccccccccccCCCcEEEEE-cCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 17 IYAATRPNLRLTSKSKVICQ-GFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVv-Gasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+|+++.|+.+++ |++++|| |+|+++|+.+.++|+++||+++++|||+..|+++.|+|+|+|++|+++++++|++++++
T Consensus 1 ~~~~~~~~~l~~-~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~vD~avI~v 79 (305)
T 2fp4_A 1 SYTASRKHLYVD-KNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYV 79 (305)
T ss_dssp CTGGGGGGGCCC-TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECC
T ss_pred CchhhHHHHHhC-CCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcceECCeeeechHHHhhhcCCCCEEEEec
Confidence 488998886666 5677777 99999999999999999999888999997567899999999999999844599999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhc-CCeEEccCCCceecCccccccCCCCCCCCCCCEEEE
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQS-KSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVV 174 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~-gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~v 174 (306)
|++.+++++++|+++|++.+|+||+||++++..++. ++++++ |++++||||+|+++|....+++++...++||+||||
T Consensus 80 P~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~-~~a~~~~gi~liGPnc~Gii~p~~~~~~~~~~~~~~~G~va~v 158 (305)
T 2fp4_A 80 PPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVK-HRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIV 158 (305)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHH-HHHTTCSSCEEECSSSCEEEETTTEEEESSCGGGCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHH-HHHHhcCCcEEEeCCCCeEecccccceeeccccCCCCCCEEEE
Confidence 999999999999999999999999999987755554 578999 999999999999999877667777666889999999
Q ss_pred ecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC---------------CCCC
Q psy8894 175 SRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---------------GPNA 239 (306)
Q Consensus 175 SqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~---------------~~~~ 239 (306)
||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ .+++
T Consensus 159 SqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g~~e~~~~~f~~~~~~~~~~ 238 (305)
T 2fp4_A 159 SRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKS 238 (305)
T ss_dssp ESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSSSHHHHHHHHHHHHSCSTTC
T ss_pred ecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCCchhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999996558999999999999999999999999984 2458
Q ss_pred CcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhhcCC
Q psy8894 240 KPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNLH 306 (306)
Q Consensus 240 KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~~~~ 306 (306)
||||+||+|||++.|+++||||++++++.|++.+|+++|+|+|++++++++||+++++++|++.+++
T Consensus 239 KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~~~~~ 305 (305)
T 2fp4_A 239 KPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKML 305 (305)
T ss_dssp CCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEECSSTTCHHHHHHHHHHHTTCC
T ss_pred CCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHHHhccCC
Confidence 9999999999985577899999999877789999999999999999999999999999999987763
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-70 Score=508.20 Aligned_cols=275 Identities=53% Similarity=0.892 Sum_probs=238.0
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+++++.++|+|+|+||++|+.+.++++++||+++++|||+..++++.|+|+|+|++|+++++++|++|+|+|++.+++++
T Consensus 2 ~~~~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~ 81 (288)
T 1oi7_A 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA 81 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred eecCCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCceECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence 57899999999999999999999999999999889999997667899999999999999844599999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHH
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEA 184 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~ 184 (306)
++|+++|++.+|++|+||++++.+++. ++++++|++++||||+|+++|..+.+++++...++||+||||||||+++.++
T Consensus 82 ~ea~~~Gi~~vVi~t~G~~~~~~~~l~-~~a~~~gi~vigPNc~Gii~~~~~~~~~~~~~~~~~G~va~vsqSG~l~~~~ 160 (288)
T 1oi7_A 82 LEAAHAGIPLIVLITEGIPTLDMVRAV-EEIKALGSRLIGGNCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEA 160 (288)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHHH-HHHHHHTCEEEESSSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCCEEEeCCCCeEEcCCCceeEEcccCCCCCCCEEEEECCHHHHHHH
Confidence 999999999999999999988766655 5789999999999999999998766667776678899999999999999999
Q ss_pred HHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCC
Q psy8894 185 VHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPP 253 (306)
Q Consensus 185 ~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~ 253 (306)
++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ ++++||||+||+|||++.
T Consensus 161 ~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~~~~~~~~~~~~~~~~~KPVv~~k~G~~~~~ 240 (288)
T 1oi7_A 161 AAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPK 240 (288)
T ss_dssp HHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSSSSHHHHHHHHHHHHCCSCEEEEESCC----
T ss_pred HHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhcCCCCEEEEEecCCCCc
Confidence 999999999999999999994448999999999999999999999999986 247999999999999855
Q ss_pred CCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q psy8894 254 GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300 (306)
Q Consensus 254 g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~ 300 (306)
++++||||++++++.|++.+|+++|+|+|++++++++||+++++.+|
T Consensus 241 ~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~ 287 (288)
T 1oi7_A 241 GKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVELVKKAL 287 (288)
T ss_dssp --------------CCSHHHHHHHHHHHTCCBCSSHHHHHHHHHHHH
T ss_pred cccCcchhhcccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence 77899999999777789999999999999999999999999999876
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-70 Score=508.89 Aligned_cols=279 Identities=48% Similarity=0.845 Sum_probs=237.0
Q ss_pred ccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCC-CcEEEEecCchhH
Q psy8894 22 RPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATG-AEATVIYVPPPGA 100 (306)
Q Consensus 22 ~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~-iDlavi~vp~~~~ 100 (306)
.|+.++++.++++|+|+|+++|+.+.++++++||+++++|||+..|+++.|+|+|+|++|++++++ +|++|+|+|++.+
T Consensus 5 ~~~~l~~~~~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~~i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~ 84 (297)
T 2yv2_A 5 VMAVLVDSETRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGSEVHGVPVYDSVKEALAEHPEINTSIVFVPAPFA 84 (297)
T ss_dssp ----CCSTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHCTTCCEEEECCCGGGH
T ss_pred hhhHhhCCCCEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCCEEEEecCHHHH
Confidence 477889988889999999999999999999999998899999976678999999999999998544 9999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhh
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTL 180 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~ 180 (306)
++++++|+++|++.+|++|+||++++.+++. ++|+++|++++||||+|+++|....+++++...++||+||||||||++
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~-~~A~~~gi~viGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l 163 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVITEGIPVHDTMRFV-NYARQKGATIIGPNCPGAITPGQAKVGIMPGHIFKEGGVAVVSRSGTL 163 (297)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCCHHHHHHHH-HHHHHHTCEEECSSSCEEEETTTEEEESCCGGGCCEEEEEEEESCHHH
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCCEEEcCCCCeeEcccccceeecccCCCCCCCEEEEECCHHH
Confidence 9999999999999999999999988766655 578999999999999999999876666777666889999999999999
Q ss_pred HHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------C-CCCCcEEEEEec
Q psy8894 181 TYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------G-PNAKPVVSFIAG 248 (306)
Q Consensus 181 ~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~-~~~KPVvvlk~G 248 (306)
+.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ + +++||||+||+|
T Consensus 164 ~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~~~~~~~~~~~~~~~~~~KPVv~~k~G 243 (297)
T 2yv2_A 164 TYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAG 243 (297)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSSSSHHHHHHHHHHTTSCCSCEEEEESC
T ss_pred HHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhccCCCCEEEEEeC
Confidence 9999999999999999999999994448899999999999999999999999986 2 689999999999
Q ss_pred CCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q psy8894 249 ITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301 (306)
Q Consensus 249 rs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~ 301 (306)
||++.++++||||++++++.|++.+|+++|+|+|++++++++||+++++++|.
T Consensus 244 ~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v~~~~el~~~~~~~~~ 296 (297)
T 2yv2_A 244 RTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVAETPFEVPELVRKALR 296 (297)
T ss_dssp CC------------------CSHHHHHHHHHTTTCEEESSGGGHHHHHHHHC-
T ss_pred CCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEeCCHHHHHHHHHHHhh
Confidence 99865778999999997777899999999999999999999999999998774
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-69 Score=504.57 Aligned_cols=279 Identities=49% Similarity=0.827 Sum_probs=237.4
Q ss_pred ccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 22 RPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 22 ~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
.+..++++..+++|+|+|+++|+.+.++++++||+++++|||+..++++.|+|+|+|++|+++++++|++++|+|++.++
T Consensus 5 ~l~~l~~~~~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~ 84 (294)
T 2yv1_A 5 DKMILLDENTKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQNVHGVPVFDTVKEAVKETDANASVIFVPAPFAK 84 (294)
T ss_dssp --CCSSCTTCCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCceECCEeeeCCHHHHhhcCCCCEEEEccCHHHHH
Confidence 35667888888899999999999999999999999889999997667899999999999999833499999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhH
Q psy8894 102 KAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLT 181 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~ 181 (306)
+++++|+++|++.+|++|+||++++.+++. ++||++|++++||||+|+++|....+++++...++||+||||||||+++
T Consensus 85 ~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~-~~A~~~gi~viGPNc~Gii~~~~~~~~~~~~~~~~~G~va~vSqSG~l~ 163 (294)
T 2yv1_A 85 DAVFEAIDAGIELIVVITEHIPVHDTMEFV-NYAEDVGVKIIGPNTPGIASPKVGKLGIIPMEVLKEGSVGMVSRSGTLT 163 (294)
T ss_dssp HHHHHHHHTTCSEEEECCSCCCHHHHHHHH-HHHHHHTCEEECSSCCEEEETTTEEEECCCGGGCCEEEEEEEESCSHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCCEEEcCCCceeeccCcceeeecccCCCCCCCEEEEECCHHHH
Confidence 999999999999989999999988766665 5789999999999999999998766666666668899999999999999
Q ss_pred HHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC----------CCCCCcEEEEEecCCC
Q psy8894 182 YEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG----------GPNAKPVVSFIAGITA 251 (306)
Q Consensus 182 ~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~----------~~~~KPVvvlk~Grs~ 251 (306)
.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ .+++||||+||+|||+
T Consensus 164 ~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g~~~~~~~~~~~~~~KPVv~~k~G~~~ 243 (294)
T 2yv1_A 164 YEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGGGAEEEAAKFIEKMKKPVIGYIAGQSA 243 (294)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSSSHHHHHHHHHTTCSSCEEEEEECC--
T ss_pred HHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 999999999999999999999994448999999999999999999999999986 3479999999999998
Q ss_pred CCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q psy8894 252 PPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301 (306)
Q Consensus 252 ~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~ 301 (306)
+.++++||||++++++.|++.+|+++|+|+|++++++++||+++++++|.
T Consensus 244 ~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~~ 293 (294)
T 2yv1_A 244 PEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVAKNISDIPKLLAGILG 293 (294)
T ss_dssp -----------------CCHHHHHHHHHHHTCEECSSTTHHHHHHHHHHC
T ss_pred CccccCCchhhhccCCCCCHHHHHHHHHHCCCeEeCCHHHHHHHHHHHhc
Confidence 65778999999997777899999999999999999999999999998873
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-68 Score=492.25 Aligned_cols=275 Identities=64% Similarity=1.059 Sum_probs=252.7
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+++++.++|+|+|+||++|+.+.++++++|++++++|||+..++++.|+|+|+|++|+++++++|++++|+|++.+++++
T Consensus 2 ~~~~~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~ 81 (288)
T 2nu8_A 2 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI 81 (288)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred eecCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccceeCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHH
Confidence 57899999999999999999999999999999999999986457889999999999999833499999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHH
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEA 184 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~ 184 (306)
++|+++|++.+|++|+||++++.+++. ++|+++|++++||||+|++||....+++++...++||+||+|||||+++.++
T Consensus 82 ~ea~~~Gi~~iVi~t~G~~~~~~~~l~-~~A~~~gv~liGPNc~Gi~~p~~~~~~~~~~~~~~~G~i~~vsqSG~l~~~~ 160 (288)
T 2nu8_A 82 LEAIDAGIKLIITITEGIPTLDMLTVK-VKLDEAGVRMIGPNTPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEA 160 (288)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHH-HHHHHHTCEEECSSCCEEEETTTEEEESSCTTSCCEEEEEEEESCHHHHHHH
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCCEEEecCCcceecCCcceeEecccCCCCCCCEEEEECcHHHHHHH
Confidence 999999999989899999988766665 5789999999999999999998766667776678899999999999999999
Q ss_pred HHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEecCCCCC
Q psy8894 185 VHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIAGITAPP 253 (306)
Q Consensus 185 ~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~ 253 (306)
++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|+++ .+++||||+||+|||++.
T Consensus 161 ~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~~~~~~~~~~~~~~~~~KPVv~~k~G~~~~~ 240 (288)
T 2nu8_A 161 VKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPK 240 (288)
T ss_dssp HHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHHHHHHHCCSCEEEEEECTTCCT
T ss_pred HHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeCCCHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Confidence 999999999999999999995459999999999999999999999999986 247999999999999855
Q ss_pred CCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHH
Q psy8894 254 GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEM 300 (306)
Q Consensus 254 g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~ 300 (306)
++++||||++++++.|++.+|+++|+|+|++++++++||+++++.+|
T Consensus 241 g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~~~~~el~~~~~~~~ 287 (288)
T 2nu8_A 241 GKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVL 287 (288)
T ss_dssp TCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEECSSGGGHHHHHHHHC
T ss_pred cccccchhhhhccCCccHHHHHHHHHHCCCeEeCCHHHHHHHHHHHh
Confidence 77899999999877789999999999999999999999999999765
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-63 Score=469.31 Aligned_cols=274 Identities=29% Similarity=0.447 Sum_probs=225.8
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcC-------CeEEEeeCCCCCC--cee------cCeeccCCHHhhhhcC-CC
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYG-------TKVVGGVSPGKGG--KTH------LDLPVFNTVKEARDAT-GA 88 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g-------~~vv~~VnP~~~g--~~i------~Gip~y~sl~el~~~~-~i 88 (306)
.++++.++|+|.|++|+ ..+.|++++ .+++++|||+..| +++ .|+|+|+|++|+++++ ++
T Consensus 5 ~l~~~~tkviV~G~~Gk----~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v~~G~~~~Gvpvy~sv~ea~~~~p~~ 80 (334)
T 3mwd_B 5 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV 80 (334)
T ss_dssp CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred cccCCCCeEEEECCchH----HHHHHHHhcccccCCCceEEEEEcCCCCCccceEeccCccCCceeeCCHHHHhhcCCCC
Confidence 47899999999999866 345666654 7799999999853 444 3899999999998754 48
Q ss_pred cEEEEecCchhHHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccc--------c
Q psy8894 89 EATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKI--------G 159 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~--------~ 159 (306)
|++|+|+|++.+.+.+.++++ +|++.++++|+||+|++.+++. ++||++|+|++||||+|++||....+ +
T Consensus 81 DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~-~~a~~~g~rliGPNc~Gii~p~~~~ig~~~~~~~a 159 (334)
T 3mwd_B 81 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLI-KKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN 159 (334)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHH-HHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred cEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-HHHHHcCCEEEccCCccccCcchhhcccccccccc
Confidence 999999999999877766666 9999999999999997766655 58999999999999999999974222 1
Q ss_pred CCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC----
Q psy8894 160 IMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---- 235 (306)
Q Consensus 160 ~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~---- 235 (306)
+++...++||+||||||||+++.++++|+.++|+|||++||+||+.++|+++.|+|+||.+||+|++|+||+|..+
T Consensus 160 ~~~~~~~~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e~ 239 (334)
T 3mwd_B 160 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 239 (334)
T ss_dssp HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH
T ss_pred cccccCCCCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHHH
Confidence 3445568999999999999999999999999999999999999999999999999999999999999999966433
Q ss_pred --------CCCCCcEEEEEecCCCCC---CCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 236 --------GPNAKPVVSFIAGITAPP---GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 236 --------~~~~KPVvvlk~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
.+++||||+||+|||++. ++++|||||+++++.|++.+|+++|+|+|+++++|++||+++++.+|+.|
T Consensus 240 ~~~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v~~~~el~~~~~~~~~~l 318 (334)
T 3mwd_B 240 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDL 318 (334)
T ss_dssp HHHHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHH
Confidence 258999999999999852 44589999999665566669999999999999999999999999999887
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-60 Score=469.59 Aligned_cols=260 Identities=22% Similarity=0.284 Sum_probs=215.1
Q ss_pred cCCCcEEEEEcCCCCCChH---HHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTF---HSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~---~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+.+|++|||||+|+++++. +.++|+++|...+++|||+. +++.|+|||+|++|+|+. +|++++++|++.++++
T Consensus 5 l~~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~--~~i~G~~~y~sl~~lp~~--~Dlavi~vp~~~~~~~ 80 (457)
T 2csu_A 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPDE--IDLAIIVVPKRFVKDT 80 (457)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSSC--CSEEEECSCHHHHHHH
T ss_pred hcCCCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCC--CeECCEeccCCHHHcCCC--CCEEEEecCHHHHHHH
Confidence 4459999999999988665 46788878622567999995 899999999999999986 9999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCChhHH-----HHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCEEEEecCh
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDM-----VKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSG 178 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~-----~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG 178 (306)
+++|+++|+|.+|++|+||+|.+. ++.+.++|+++|++++||||+|+++|..+.+.++.+..+. |+||||||||
T Consensus 81 v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~Gv~~~~~~~~~~~~~~~~~-G~v~~vsqSG 159 (457)
T 2csu_A 81 LIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIMNTHVDLNATFITVAKK-GNVAFISQSG 159 (457)
T ss_dssp HHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEEEGGGTEEEESSCCCEE-CSEEEEESCH
T ss_pred HHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcceEEccCCCceeeecCCCCC-CCEEEEeCCH
Confidence 999999999999999999987431 3334467899999999999999999986433333333344 9999999999
Q ss_pred hhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------CCCCCcEEEEEe
Q psy8894 179 TLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG-----------GPNAKPVVSFIA 247 (306)
Q Consensus 179 ~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~-----------~~~~KPVvvlk~ 247 (306)
+++.++++|+.++|+|||++||+||+ .|+++.|+|+||.+||+|++|+||+|+++ .+++||||++|+
T Consensus 160 ~~~~~~~~~~~~~g~G~s~~vs~G~~--~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~~~~~KPVv~~k~ 237 (457)
T 2csu_A 160 ALGAGIVYKTIKEDIGFSKFISVGNM--ADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKA 237 (457)
T ss_dssp HHHHHHHHHHHHTTCEESEEEECTTC--CSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHHHHHHSCEEEEEC
T ss_pred HHHHHHHHHHHhcCCCeeEEEECCCc--CCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEc
Confidence 99999999999999999999999999 89999999999999999999999999976 247899999999
Q ss_pred cCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHH
Q psy8894 248 GITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLK 298 (306)
Q Consensus 248 Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~ 298 (306)
|||++ |++ +||||+++ |++.+|+++|||+|++++++++||++..+.
T Consensus 238 G~~~~-g~~aa~~Htgala----g~~~~~~AafRqaGv~~v~~~~El~~~~~~ 285 (457)
T 2csu_A 238 GKSES-GARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTIDEMLSMARA 285 (457)
T ss_dssp C-----------------------CHHHHHHHHHHTTCEEESSHHHHHHHHTT
T ss_pred CCCcc-ccchhhcccCccC----CcHHHHHHHHHhCCCeEECCHHHHHHHHHH
Confidence 99986 664 79999999 899999999999999999999999998764
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=484.98 Aligned_cols=274 Identities=29% Similarity=0.445 Sum_probs=232.2
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcC-------CeEEEeeCCCCCC--cee------cCeeccCCHHhhhhcC-CC
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYG-------TKVVGGVSPGKGG--KTH------LDLPVFNTVKEARDAT-GA 88 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g-------~~vv~~VnP~~~g--~~i------~Gip~y~sl~el~~~~-~i 88 (306)
.++++.++|+|.|++|+ ..++|+++| .+++++|||+..| .++ .|+|||+|++|+++++ ++
T Consensus 491 ~l~~~~trviV~G~tg~----~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~~~G~~~~Gvp~y~sv~ea~~~~p~~ 566 (829)
T 3pff_A 491 TLFSRHTKAIVWGMQTR----AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEILIPVFKNMADAMRKHPEV 566 (829)
T ss_dssp CCCCTTCCEEEESCCHH----HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEEEETTEEEEEEEESSHHHHHHHCTTC
T ss_pred eeecCCCeEEEECCcHH----HHHHHHHhcccccCCCCcEEEEEcCCCCCccceEEecCCcCCcccCCcHHHHhhccCCC
Confidence 56899999999999866 677888876 5699999999863 233 4799999999998754 48
Q ss_pred cEEEEecCchhHHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcccccc--------
Q psy8894 89 EATVIYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIG-------- 159 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~-------- 159 (306)
|++|+++|++.+.+++++|++ +|++.++++|+||+|.+..++. ++||++|+|++||||+|+++|....++
T Consensus 567 DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~-~~A~~~g~rliGPNc~Gii~p~~~~ig~~~g~lna 645 (829)
T 3pff_A 567 DVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLI-KKADQKGVTIIGPATVGGIKPGCFKIGNTGGMLDN 645 (829)
T ss_dssp CEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHH-HHHHHHTCEEECSSCCCEEETTTEECTTTTCSHHH
T ss_pred cEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHH-HHHHHcCCEEEcCCCcccCcccccccccccccccc
Confidence 999999999999999999999 9999999999999998765554 589999999999999999999864333
Q ss_pred CCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC----
Q psy8894 160 IMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG---- 235 (306)
Q Consensus 160 ~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~---- 235 (306)
+++...++||+||||||||+++.++++|+.++|+|||++||+||+++.|+++.|+|+||.+||+|++|+||+|..+
T Consensus 646 ~~~~~~~~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~ 725 (829)
T 3pff_A 646 ILASKLYRPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEY 725 (829)
T ss_dssp HHHTTTTSCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHH
T ss_pred ccccccCCCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHH
Confidence 3444568899999999999999999999999999999999999998889999999999999999999999999443
Q ss_pred ------C--CCCCcEEEEEecCCCCC---CCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHHhh
Q psy8894 236 ------G--PNAKPVVSFIAGITAPP---GRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRL 303 (306)
Q Consensus 236 ------~--~~~KPVvvlk~Grs~~~---g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~~~ 303 (306)
. +++||||+||+|||++. ++++|||||+++++.|++++|+++|+|+|++|+++++||+++++.+|+.|
T Consensus 726 ~aA~~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v~~~~el~~~~~~~~~~l 804 (829)
T 3pff_A 726 KICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVPRSFDELGEIIQSVYEDL 804 (829)
T ss_dssp HHHHHHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCCSSGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEcCCHHHHHHHHHHHHHHH
Confidence 1 58899999999999863 56799999999766667779999999999999999999999999999887
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=354.31 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=170.2
Q ss_pred CeeccCC---HHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 72 DLPVFNT---VKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 72 Gip~y~s---l~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
++|+|++ +.++|+. +|++|+++|++.+.+++++|.++|+| ++++|+||+.++.+++. ++||++|+|++||||
T Consensus 20 ~~Pv~~~~~~~~~~p~~--~DlavI~vPa~~v~~~v~e~~~~Gv~-~viis~Gf~~~~~~~l~-~~A~~~g~rliGPNc- 94 (480)
T 3dmy_A 20 ALTQVRRWDSACQKLPD--ANLALISVAGEYAAELANQALDRNLN-VMMFSDNVTLEDEIQLK-TRAREKGLLVMGPDC- 94 (480)
T ss_dssp CCEEESSHHHHHHHSTT--CCEEEECSCHHHHHHHHHHHHHTTCE-EEECCCCCCHHHHHHHH-HHHHHTTCCEECSSC-
T ss_pred CCcccchHHHHHhcCCC--CCEEEEecCHHHHHHHHHHHHhcCCC-EEEECCCCCHHHHHHHH-HHHHHcCCEEEecCc-
Confidence 5666554 5566654 99999999999999999999999999 78899999966555444 589999999999999
Q ss_pred ceecCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCC----CCCCCHHHHHHHhhcCCCc
Q psy8894 149 GIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP----FNGTNFIDCLEVFLKDPET 224 (306)
Q Consensus 149 Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~----~~dv~~~d~l~~l~~D~~t 224 (306)
|++++. +.+.++.. ..++|+||||||||+++.++++|+.++|+|||++||+||+. +.|+++.|+|+||.+||+|
T Consensus 95 G~~~~~-~~~~~f~~-~~~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T 172 (480)
T 3dmy_A 95 GTSMIA-GTPLAFAN-VMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKS 172 (480)
T ss_dssp CEEEET-TEEEESCC-CCCEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTC
T ss_pred cccccC-CccccccC-CCCCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCC
Confidence 888873 33323332 35699999999999999999999999999999999999993 4899999999999999999
Q ss_pred cEEEEEEeeCC-----------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHH
Q psy8894 225 KGIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMG 293 (306)
Q Consensus 225 ~~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~ 293 (306)
++|+||+|++. ++++||||++|+|||+. | |+|+|++++++++||+
T Consensus 173 ~~I~ly~E~~~e~~~~~f~~~ar~~~KPVV~~k~Grs~~----------------g--------~r~~Gvirv~~~~el~ 228 (480)
T 3dmy_A 173 EVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPA----------------V--------ARDENVWFASSLDEAA 228 (480)
T ss_dssp CEEEEEESCCCHHHHHHHHHHHHHHCSCEEEEETTCCCS----------------S--------SEETTEEEESSHHHHH
T ss_pred CEEEEEEecCCcHHHHHHHHHHHhCCCCEEEEEeCCCCc----------------c--------cccCCEEEECCHHHHH
Confidence 99999998764 25789999999999975 3 8999999999999999
Q ss_pred HHHHHHH
Q psy8894 294 NELLKEM 300 (306)
Q Consensus 294 ~~~~~~~ 300 (306)
++++++-
T Consensus 229 ~~a~~l~ 235 (480)
T 3dmy_A 229 RLACLLS 235 (480)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998653
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-27 Score=195.15 Aligned_cols=129 Identities=12% Similarity=0.192 Sum_probs=108.8
Q ss_pred cccccccccCCCcEEEEEcCCCCCChH---HHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 19 AATRPNLRLTSKSKVICQGFTGKQGTF---HSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 19 ~~~~~~~~~~~~~~VaVvGasg~~G~~---~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+++.+..+|++|++|||||+|.++|+. ..++|++.||+ +++|||+..++++.|+++|+|++|+++. +|++++++
T Consensus 2 ~~~~l~~ll~~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~-v~~vnp~~~~~~i~G~~~~~sl~el~~~--vDlavi~v 78 (140)
T 1iuk_A 2 NDQELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNPRFQGEELFGEEAVASLLDLKEP--VDILDVFR 78 (140)
T ss_dssp CHHHHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECGGGTTSEETTEECBSSGGGCCSC--CSEEEECS
T ss_pred CHHHHHHHHcCCCEEEEECCCCCCCChHHHHHHHHHHCCCE-EEEeCCCcccCcCCCEEecCCHHHCCCC--CCEEEEEe
Confidence 344555566679999999999776664 56788989998 6799999545899999999999999986 99999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ 155 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~ 155 (306)
|++.+++++++|.++|++.+|+ ++|+.++++. ++|+++|++++||||+|+++|..
T Consensus 79 p~~~~~~v~~~~~~~gi~~i~~-~~g~~~~~~~----~~a~~~Gir~vgpnc~g~~~~~~ 133 (140)
T 1iuk_A 79 PPSALMDHLPEVLALRPGLVWL-QSGIRHPEFE----KALKEAGIPVVADRCLMVEHKRL 133 (140)
T ss_dssp CHHHHTTTHHHHHHHCCSCEEE-CTTCCCHHHH----HHHHHTTCCEEESCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE-cCCcCHHHHH----HHHHHcCCEEEcCCccceEChhh
Confidence 9999999999999999999885 6777554332 47899999999999999999853
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.4e-26 Score=184.75 Aligned_cols=114 Identities=11% Similarity=0.204 Sum_probs=101.0
Q ss_pred CCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|++|||||+|.++++.+ .++|++.||++ +||||+. +++.|++||+|++|+|+ +|++++++|++.+++++
T Consensus 2 ~~p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V-~pVnP~~--~~i~G~~~y~sl~dlp~---vDlavi~~p~~~v~~~v 75 (122)
T 3ff4_A 2 NAMKKTLILGATPETNRYAYLAAERLKSHGHEF-IPVGRKK--GEVLGKTIINERPVIEG---VDTVTLYINPQNQLSEY 75 (122)
T ss_dssp CCCCCEEEETCCSCTTSHHHHHHHHHHHHTCCE-EEESSSC--SEETTEECBCSCCCCTT---CCEEEECSCHHHHGGGH
T ss_pred CCCCEEEEEccCCCCCCHHHHHHHHHHHCCCeE-EEECCCC--CcCCCeeccCChHHCCC---CCEEEEEeCHHHHHHHH
Confidence 5799999999999998876 56888889975 5999997 89999999999999996 99999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
++|.++|+|.+| +++||.++++. ++||++|||++| ||+|++-.
T Consensus 76 ~e~~~~g~k~v~-~~~G~~~~e~~----~~a~~~Girvv~-nC~gv~l~ 118 (122)
T 3ff4_A 76 NYILSLKPKRVI-FNPGTENEELE----EILSENGIEPVI-GCTLVMLS 118 (122)
T ss_dssp HHHHHHCCSEEE-ECTTCCCHHHH----HHHHHTTCEEEE-SCHHHHHH
T ss_pred HHHHhcCCCEEE-ECCCCChHHHH----HHHHHcCCeEEC-CcCeEEec
Confidence 999999999866 79999765433 478999999996 99998753
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=187.57 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=109.1
Q ss_pred cccccccccccCCCcEEEEEcCCCCCCh---HHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 17 IYAATRPNLRLTSKSKVICQGFTGKQGT---FHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVvGasg~~G~---~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi 93 (306)
.|+++.+..+|++|++|+|||+|.++|+ .+.++|++.||+ +++|||+. +++.|+++|+|++|+++. +|++++
T Consensus 9 ~m~~~~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~G~~-v~~Vnp~~--~~i~G~~~y~sl~~l~~~--vDlvvi 83 (144)
T 2d59_A 9 GLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYD-VYPVNPKY--EEVLGRKCYPSVLDIPDK--IEVVDL 83 (144)
T ss_dssp CCCHHHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGCSSC--CSEEEE
T ss_pred CCCHHHHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHCCCE-EEEECCCC--CeECCeeccCCHHHcCCC--CCEEEE
Confidence 3556667777777999999999966665 456788889998 56999996 889999999999999986 999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCc
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPE 154 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~ 154 (306)
++|++.+++++++|+++|++.+| +++|+.++++. ++|+++|++++||||+|++++.
T Consensus 84 ~vp~~~~~~vv~~~~~~gi~~i~-~~~g~~~~~l~----~~a~~~Gi~vvGpnc~gv~~~~ 139 (144)
T 2d59_A 84 FVKPKLTMEYVEQAIKKGAKVVW-FQYNTYNREAS----KKADEAGLIIVANRCMMREHER 139 (144)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEE-ECTTCCCHHHH----HHHHHTTCEEEESCCHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHcCCCEEE-ECCCchHHHHH----HHHHHcCCEEEcCCchhhcchh
Confidence 99999999999999999999987 57777543322 4789999999999999999874
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=188.80 Aligned_cols=129 Identities=20% Similarity=0.192 Sum_probs=108.7
Q ss_pred cccccccccCCCcEEEEEcCCCCCCh---HHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 19 AATRPNLRLTSKSKVICQGFTGKQGT---FHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 19 ~~~~~~~~~~~~~~VaVvGasg~~G~---~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+++.+..+|++|++|+|||+|.++|+ ...++|++.||+ +++|||+..|+++.|+++|+|++|+++. +|++++++
T Consensus 2 ~~~~l~~ll~~p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~~g~~i~G~~~~~sl~el~~~--~Dlvii~v 78 (145)
T 2duw_A 2 KENDIAGILTSTRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKVAGKTLLGQQGYATLADVPEK--VDMVDVFR 78 (145)
T ss_dssp CCCSHHHHHHHCCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSSTTSEETTEECCSSTTTCSSC--CSEEECCS
T ss_pred CHHHHHHHHhCCCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcccccccCCeeccCCHHHcCCC--CCEEEEEe
Confidence 44556667777999999999966555 456788889998 5699999867889999999999999986 99999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ 155 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~ 155 (306)
|++.+++++++|+++|++.+|++++.+ +++ + .++|+++|++++||||+|+++|..
T Consensus 79 p~~~v~~v~~~~~~~g~~~i~i~~~~~-~~~---l-~~~a~~~Gi~~igpnc~g~~~~~~ 133 (145)
T 2duw_A 79 NSEAAWGVAQEAIAIGAKTLWLQLGVI-NEQ---A-AVLAREAGLSVVMDRCPAIELPRL 133 (145)
T ss_dssp CSTHHHHHHHHHHHHTCCEEECCTTCC-CHH---H-HHHHHTTTCEEECSCCHHHHSTTT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCChH-HHH---H-HHHHHHcCCEEEcCCeeeEEcccc
Confidence 999999999999999999999765444 222 2 246899999999999999999964
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-24 Score=180.12 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=99.7
Q ss_pred ccCCCcEEEEEcCCCCCChH---HHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTF---HSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~---~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
-+.+|++|+|||+|.++|+. ..++|++.||+ +++|||+. +++.|+++|+|++|+++. +|++++++|++.+++
T Consensus 10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~-V~~vnp~~--~~i~G~~~~~s~~el~~~--vDlvii~vp~~~v~~ 84 (138)
T 1y81_A 10 NSKEFRKIALVGASKNPAKYGNIILKDLLSKGFE-VLPVNPNY--DEIEGLKCYRSVRELPKD--VDVIVFVVPPKVGLQ 84 (138)
T ss_dssp ----CCEEEEETCCSCTTSHHHHHHHHHHHTTCE-EEEECTTC--SEETTEECBSSGGGSCTT--CCEEEECSCHHHHHH
T ss_pred cccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCE-EEEeCCCC--CeECCeeecCCHHHhCCC--CCEEEEEeCHHHHHH
Confidence 45679999999999777665 46788889998 56999996 889999999999999986 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ 155 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~ 155 (306)
++++|+++|++.+|+++++++ +++ .++++++|++++||||+|++++..
T Consensus 85 v~~~~~~~g~~~i~~~~~~~~----~~l-~~~a~~~Gi~~igpnc~g~~~~~~ 132 (138)
T 1y81_A 85 VAKEAVEAGFKKLWFQPGAES----EEI-RRFLEKAGVEYSFGRCIMVETSNK 132 (138)
T ss_dssp HHHHHHHTTCCEEEECTTSCC----HHH-HHHHHHHTCEEECSCCHHHHC---
T ss_pred HHHHHHHcCCCEEEEcCccHH----HHH-HHHHHHCCCEEEcCCcceEEccCc
Confidence 999999999999998776652 222 246899999999999999999864
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.2e-13 Score=122.53 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=96.8
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC---CCce--------ecCeeccCCHHhhhhcCCCcEEE
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK---GGKT--------HLDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~---~g~~--------i~Gip~y~sl~el~~~~~iDlav 92 (306)
..+.++.||+|+|++|+||+.+.+.+.+. ++++++.++++. .|.. -.|+|+|.+++++..+ +|++|
T Consensus 16 ~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~--aDVvI 93 (288)
T 3ijp_A 16 TQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSN--TEGIL 93 (288)
T ss_dssp -----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTS--CSEEE
T ss_pred hhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcC--CCEEE
Confidence 34557889999999999999999988765 999999988753 1221 2588999999998875 99999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Cceec
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIA 152 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~ 152 (306)
+|++|+.+.+.++.|+++|++.| +.|+||++++.+++. ++|++.+ -++.||. +|+.-
T Consensus 94 DFT~p~a~~~~~~~~l~~Gv~vV-iGTTG~~~e~~~~L~-~aa~~~~-~~~a~N~SiGv~l 151 (288)
T 3ijp_A 94 DFSQPQASVLYANYAAQKSLIHI-IGTTGFSKTEEAQIA-DFAKYTT-IVKSGNMSLGVNL 151 (288)
T ss_dssp ECSCHHHHHHHHHHHHHHTCEEE-ECCCCCCHHHHHHHH-HHHTTSE-EEECSCCCHHHHH
T ss_pred EcCCHHHHHHHHHHHHHcCCCEE-EECCCCCHHHHHHHH-HHhCcCC-EEEECCCcHHHHH
Confidence 99999999999999999999965 579999987765544 5777755 4888986 56654
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=115.31 Aligned_cols=118 Identities=14% Similarity=0.260 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC---CCce-------ecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK---GGKT-------HLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~---~g~~-------i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..||+|+|++|+||+.+.+.+.+. ++++++.++++. .|.. -.|+++|.+++++.++ +|++|+|++|+
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~--~DVVIDfT~p~ 84 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAE--ADYLIDFTLPE 84 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHH--CSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcC--CCEEEEcCCHH
Confidence 478999999999999999988775 899998888653 1211 1278999999998876 99999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Cceec
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIA 152 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~ 152 (306)
.+.+.++.|+++|++.| +.|+||++++.+++. ++|++.+ .++.||. +|+.-
T Consensus 85 a~~~~~~~al~~G~~vV-igTTG~s~~~~~~L~-~aa~~~~-vv~a~N~s~Gv~l 136 (272)
T 4f3y_A 85 GTLVHLDAALRHDVKLV-IGTTGFSEPQKAQLR-AAGEKIA-LVFSANMSVGVNV 136 (272)
T ss_dssp HHHHHHHHHHHHTCEEE-ECCCCCCHHHHHHHH-HHTTTSE-EEECSCCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEE-EECCCCCHHHHHHHH-HHhccCC-EEEECCCCHHHHH
Confidence 99999999999999965 589999988765554 5677755 4888986 56543
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-12 Score=113.69 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=82.1
Q ss_pred cccccccccCCCcEEEEEcCCCCCChHHHHH--HHHcCCeEEEee--CCC-CCCc-eecCeeccC--CHHhhhhcCCCcE
Q psy8894 19 AATRPNLRLTSKSKVICQGFTGKQGTFHSKQ--AIEYGTKVVGGV--SPG-KGGK-THLDLPVFN--TVKEARDATGAEA 90 (306)
Q Consensus 19 ~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~--l~~~g~~vv~~V--nP~-~~g~-~i~Gip~y~--sl~el~~~~~iDl 90 (306)
+.-...+.+++.++|+|+|+ |+.|+...+. +.+.||++++.+ ||+ ..|. .+.|+|+|+ +++++.+++++|.
T Consensus 73 ~~i~~~Lg~~~~~~V~IvGa-G~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~ 151 (212)
T 3keo_A 73 NFFAEILNDHSTTNVMLVGC-GNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIET 151 (212)
T ss_dssp HHHHHHTTTTSCEEEEEECC-SHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred HHHHHHhCCCCCCEEEEECc-CHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCE
Confidence 33344677888999999999 9999988775 344689998885 566 6677 789999996 3444444567999
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+++++|...++++++.|.+.||++||+||+
T Consensus 152 vIIAvPs~~aq~v~d~lv~~GIk~I~nFap 181 (212)
T 3keo_A 152 AILTVPSTEAQEVADILVKAGIKGILSFSP 181 (212)
T ss_dssp EEECSCGGGHHHHHHHHHHHTCCEEEECSS
T ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999999999999999999999998
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-11 Score=110.56 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=92.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC---Cc--------eecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG---GK--------THLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~---g~--------~i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
++.+|+|+|++|+||+.+.+.+.+. ++++++.+++... +. ...+++++.+++++... +|++|+|++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~--~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD--FDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS--CSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcC--CCEEEEcCC
Confidence 4579999999999999999887754 8888877776431 11 12367788889888764 999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccC-CCceec
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPN-CPGIIA 152 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPN-c~Gi~~ 152 (306)
|+.+.+.++.|+++|++. ++.|+|+++++.+++. +++++.+ .++.|| ++|+..
T Consensus 82 p~~~~~~~~~a~~~G~~v-VigTtG~~~e~~~~L~-~~a~~~~-vv~a~N~siGvn~ 135 (273)
T 1dih_A 82 PEGTLNHLAFCRQHGKGM-VIGTTGFDEAGKQAIR-DAAADIA-IVFAANFSVGVNV 135 (273)
T ss_dssp HHHHHHHHHHHHHTTCEE-EECCCCCCHHHHHHHH-HHTTTSC-EEECSCCCHHHHH
T ss_pred hHHHHHHHHHHHhCCCCE-EEECCCCCHHHHHHHH-HhcCCCC-EEEEecCcHHHHH
Confidence 999999999999999995 5579999987755554 4566655 677888 566654
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-11 Score=108.33 Aligned_cols=113 Identities=19% Similarity=0.289 Sum_probs=91.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
..||+|+|+ |+||+.+.+.+.+.+.++++.+++.. ....|+++|.+++++. + +|++|+|++|+.+.+.++ ++
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~--~~~~gv~v~~dl~~l~-~--~DVvIDft~p~a~~~~~~--l~ 74 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTP--KATTPYQQYQHIADVK-G--ADVAIDFSNPNLLFPLLD--ED 74 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSC--C--CCSCBCSCTTTCT-T--CSEEEECSCHHHHHHHHT--SC
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCc--cccCCCceeCCHHHHh-C--CCEEEEeCChHHHHHHHH--Hh
Confidence 368999999 99999999988887449988899875 3457899999999987 5 999999999999999997 88
Q ss_pred cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-CceecC
Q psy8894 110 AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGIIAP 153 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~~~ 153 (306)
+|++.| +.|+|+++++.+++. ++|++.++ ++.||. +|+.-.
T Consensus 75 ~g~~vV-igTTG~s~e~~~~l~-~aa~~~~v-~~a~N~S~Gv~l~ 116 (243)
T 3qy9_A 75 FHLPLV-VATTGEKEKLLNKLD-ELSQNMPV-FFSANMSYGVHAL 116 (243)
T ss_dssp CCCCEE-ECCCSSHHHHHHHHH-HHTTTSEE-EECSSCCHHHHHH
T ss_pred cCCceE-eCCCCCCHHHHHHHH-HHHhcCCE-EEECCccHHHHHH
Confidence 999965 589999877765554 57777554 888886 566543
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=7.1e-10 Score=100.27 Aligned_cols=106 Identities=19% Similarity=0.266 Sum_probs=84.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.+|+|+|++|+||+.+.+.+.+. ++++++.+++. .+++++... ++|++|+|++|+.+.+.++.|++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~------------~dl~~~~~~-~~DvvIDfT~p~a~~~~~~~a~~ 67 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG------------DPLSLLTDG-NTEVVIDFTHPDVVMGNLEFLID 67 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT------------CCTHHHHHT-TCCEEEECSCTTTHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC------------CCHHHHhcc-CCcEEEEccChHHHHHHHHHHHH
Confidence 37999999999999999888776 99999888864 236666542 49999999999999999999999
Q ss_pred cCCCEEEEecCCCChhHHHHHHHHHHHhc-CC-eEEccCC-Ccee
Q psy8894 110 AEMPLIVCITEGIPQLDMVKVKHRLIRQS-KS-RLIGPNC-PGII 151 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~-gi-~iiGPNc-~Gi~ 151 (306)
+|++.|+ .|+|+++++.+++. ++|++. ++ .++.||. +|+.
T Consensus 68 ~g~~~Vi-gTTG~~~e~~~~l~-~aa~~~~~~~vv~a~N~siGv~ 110 (245)
T 1p9l_A 68 NGIHAVV-GTTGFTAERFQQVE-SWLVAKPNTSVLIAPNFAIGAV 110 (245)
T ss_dssp TTCEEEE-CCCCCCHHHHHHHH-HHHHTSTTCEEEECSCCCHHHH
T ss_pred cCCCEEE-cCCCCCHHHHHHHH-HHHHhCCCCCEEEECCccHHHH
Confidence 9999654 79999987665443 577765 76 5788884 4553
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=96.92 Aligned_cols=95 Identities=20% Similarity=0.165 Sum_probs=79.0
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHH--HHHcCCeEEEee--CCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecC
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQ--AIEYGTKVVGGV--SPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVP 96 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~--l~~~g~~vv~~V--nP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp 96 (306)
..+.+++.++|+|+|+ |++|+.+.+. ... |+++++.+ ||...|..+.|+|++. +++++.++ ++|.+++++|
T Consensus 73 ~~lg~~~~~rV~IIGa-G~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~-~ID~ViIA~P 149 (211)
T 2dt5_A 73 HILGLNRKWGLCIVGM-GRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPG-RIEIALLTVP 149 (211)
T ss_dssp HHHTTTSCEEEEEECC-SHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTT-TCCEEEECSC
T ss_pred HHhCcCCCCEEEEECc-cHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHc-CCCEEEEeCC
Confidence 3456788899999999 9999988774 233 88888885 5666677888999854 56676666 7999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
...++++++.|.+.|++.+|+|++
T Consensus 150 s~~~~ei~~~l~~aGi~~Ilnf~P 173 (211)
T 2dt5_A 150 REAAQKAADLLVAAGIKGILNFAP 173 (211)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECSS
T ss_pred chhHHHHHHHHHHcCCCEEEECCc
Confidence 999999999999999999999887
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-09 Score=95.04 Aligned_cols=95 Identities=20% Similarity=0.245 Sum_probs=73.1
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHH--HHHcCCeEEEee--CCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCc
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQ--AIEYGTKVVGGV--SPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~--l~~~g~~vv~~V--nP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.+.+++.++|+|+|+ |++|+...+. ....|+++++.+ ||...|..+.|+|++. +++++.++ . |++++++|.
T Consensus 79 ~lg~~~~~rV~IIGA-G~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~-~-D~ViIAvPs 155 (215)
T 2vt3_A 79 TLDQDEMTDVILIGV-GNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKD-E-SVAILTVPA 155 (215)
T ss_dssp HHHHC---CEEEECC-SHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSS-C-CEEEECSCH
T ss_pred HhCcCCCCEEEEEcc-CHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHh-C-CEEEEecCc
Confidence 456777889999999 9999998873 344589988875 5666677889999875 45666555 3 999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
..++++++.|.+.|++.+|+|++-
T Consensus 156 ~~~~ei~~~l~~aGi~~Ilnf~P~ 179 (215)
T 2vt3_A 156 VAAQSITDRLVALGIKGILNFTPA 179 (215)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSC
T ss_pred hhHHHHHHHHHHcCCCEEEEcCce
Confidence 999999999999999999999873
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=91.36 Aligned_cols=114 Identities=14% Similarity=0.186 Sum_probs=87.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDA 110 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~ 110 (306)
.+|+|+|+ |+||+...+.+.+.|+++++..|+....+. .|.+++++.+ .++|++++++|++.+.+.+.+++++
T Consensus 1 m~vgiIG~-G~mG~~~~~~l~~~g~~lv~v~d~~~~~~~-----~~~~~~~l~~-~~~DvVv~~~~~~~~~~~~~~~l~~ 73 (236)
T 2dc1_A 1 MLVGLIGY-GAIGKFLAEWLERNGFEIAAILDVRGEHEK-----MVRGIDEFLQ-REMDVAVEAASQQAVKDYAEKILKA 73 (236)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCCCTT-----EESSHHHHTT-SCCSEEEECSCHHHHHHHHHHHHHT
T ss_pred CEEEEECC-CHHHHHHHHHHhcCCCEEEEEEecCcchhh-----hcCCHHHHhc-CCCCEEEECCCHHHHHHHHHHHHHC
Confidence 37999999 999999998888789998778887631111 7889999874 2499999999999999999999999
Q ss_pred CCCEEEEecCCCCh-hHHHHHHHHHHHhcCCe-EEccCCCceec
Q psy8894 111 EMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSR-LIGPNCPGIIA 152 (306)
Q Consensus 111 Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~-iiGPNc~Gi~~ 152 (306)
|.+ +++.+++... .+..+.+.++++++|.. ++-+|+.|-+.
T Consensus 74 G~~-vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~ 116 (236)
T 2dc1_A 74 GID-LIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLD 116 (236)
T ss_dssp TCE-EEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHH
T ss_pred CCc-EEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChH
Confidence 987 5556777643 33313334578888886 57888776554
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-08 Score=91.17 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
...+..|+|++||||+.+.+...+.|+++++.+++.. . +++ .+ +|++|+|+.|+.+.+.++.|.
T Consensus 11 ~~~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~--~-----------~~l-~~--~DVvIDFT~P~a~~~~~~~~~ 74 (228)
T 1vm6_A 11 HHMKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--V-----------EEL-DS--PDVVIDFSSPEALPKTVDLCK 74 (228)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--E-----------EEC-SC--CSEEEECSCGGGHHHHHHHHH
T ss_pred ccceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCC--c-----------ccc-cC--CCEEEECCCHHHHHHHHHHHH
Confidence 4578999999999999998766667999998888752 1 222 23 899999999999999999999
Q ss_pred HcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Ccee
Q psy8894 109 DAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGII 151 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~ 151 (306)
++|++.|+ .||||++++.+++. +++++ ---++.||. +|+.
T Consensus 75 ~~g~~~Vi-GTTG~~~~~~~~l~-~~a~~-~~vv~apNfSlGvn 115 (228)
T 1vm6_A 75 KYRAGLVL-GTTALKEEHLQMLR-ELSKE-VPVVQAYNFSIGIN 115 (228)
T ss_dssp HHTCEEEE-CCCSCCHHHHHHHH-HHTTT-SEEEECSCCCHHHH
T ss_pred HcCCCEEE-eCCCCCHHHHHHHH-HHHhh-CCEEEeccccHHHH
Confidence 99999654 89999988765443 45544 236778885 5653
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=93.11 Aligned_cols=107 Identities=20% Similarity=0.200 Sum_probs=85.6
Q ss_pred CcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhc-CCCcEEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDA-TGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~~e 106 (306)
+.||+|||+ |++|+ ...+.+.+. ++++++..++.. +..|+++|.+++++.+. .++|++++++|+..+.+.+.+
T Consensus 25 ~~rvgiiG~-G~ig~~~~~~~l~~~~~~~lvav~d~~~---~~~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~ 100 (330)
T 4ew6_A 25 PINLAIVGV-GKIVRDQHLPSIAKNANFKLVATASRHG---TVEGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYK 100 (330)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHHCTTEEEEEEECSSC---CCTTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHH
T ss_pred CceEEEEec-CHHHHHHHHHHHHhCCCeEEEEEEeCCh---hhcCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence 579999999 99988 678888876 889998888874 44789999999999876 579999999999999999999
Q ss_pred HHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 107 ALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
|+++|++ |++=-+ ..+.++.+++. ++|+++|+.+
T Consensus 101 al~aGkh-Vl~EKP~a~~~~e~~~l~-~~a~~~g~~~ 135 (330)
T 4ew6_A 101 ALVAGKH-VFLEKPPGATLSEVADLE-ALANKQGASL 135 (330)
T ss_dssp HHHTTCE-EEECSSSCSSHHHHHHHH-HHHHHHTCCE
T ss_pred HHHcCCc-EEEeCCCCCCHHHHHHHH-HHHHhcCCeE
Confidence 9999965 555222 33445555554 5788888744
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-08 Score=92.18 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=89.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+++.+|+|||+ |++|+...+.+.+. ++++++..|++.... +..|+++|.+++++.+..++|++++++|+..+.
T Consensus 11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 89 (354)
T 3q2i_A 11 DRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHP 89 (354)
T ss_dssp SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHH
T ss_pred CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 46789999999 99999988888886 788888888764111 234889999999998754699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+.+.+|+++|++ +++--+ ..+.++.+++. +++++.|+.+ +|.+
T Consensus 90 ~~~~~al~~gk~-v~~EKP~a~~~~~~~~l~-~~a~~~g~~~~v~~~ 134 (354)
T 3q2i_A 90 TQSIECSEAGFH-VMTEKPMATRWEDGLEMV-KAADKAKKHLFVVKQ 134 (354)
T ss_dssp HHHHHHHHTTCE-EEECSSSCSSHHHHHHHH-HHHHHHTCCEEECCG
T ss_pred HHHHHHHHCCCC-EEEeCCCcCCHHHHHHHH-HHHHHhCCeEEEEEc
Confidence 999999999965 555333 34555655555 4788888755 4443
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=87.88 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=86.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCeeccCCHHhhh--------hcCCCcEEEEecC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLPVFNTVKEAR--------DATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~--------~~~~iDlavi~vp 96 (306)
++.+|+|||+.|.+|+...+.+++.+.++++.++++.... ...+.++|.+++++. +..++|++++++|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred CceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 3579999999778999999998888999998888765321 224678999999987 4447999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+..+.+.+++|+++|++ |++=-+ ..+.++.+++. ++|+++|+.+
T Consensus 82 ~~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~ 126 (312)
T 3o9z_A 82 NHLHYPQIRMALRLGAN-ALSEKPLVLWPEEIARLK-ELEARTGRRV 126 (312)
T ss_dssp GGGHHHHHHHHHHTTCE-EEECSSSCSCHHHHHHHH-HHHHHHCCCE
T ss_pred chhhHHHHHHHHHCCCe-EEEECCCCCCHHHHHHHH-HHHHHcCCEE
Confidence 99999999999999976 554111 23445555555 5788988755
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.8e-08 Score=92.57 Aligned_cols=113 Identities=18% Similarity=0.158 Sum_probs=87.5
Q ss_pred cCCCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCC--ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGG--KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+.++.+|+|||+ |.+|+. +.+.+.+. ++++++..++.... ....+.++|.+++++.+..++|++++++|+..+.+
T Consensus 4 M~~~~rvgiiG~-G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~ 82 (352)
T 3kux_A 4 MADKIKVGLLGY-GYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFP 82 (352)
T ss_dssp TTCCEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHH
T ss_pred ccCCceEEEECC-CHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 345789999999 999985 77777776 88998888776311 23457889999999988667999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+
T Consensus 83 ~~~~al~aGkh-V~~EKPla~~~~e~~~l~-~~a~~~g~~~ 121 (352)
T 3kux_A 83 LAQSALAAGKH-VVVDKPFTVTLSQANALK-EHADDAGLLL 121 (352)
T ss_dssp HHHHHHHTTCE-EEECSSCCSCHHHHHHHH-HHHHHTTCCE
T ss_pred HHHHHHHCCCc-EEEECCCcCCHHHHHHHH-HHHHHcCCeE
Confidence 99999999965 565333 44555666655 5788988744
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-08 Score=93.75 Aligned_cols=116 Identities=14% Similarity=0.156 Sum_probs=89.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++.+|+|||+ |++|+...+.+.+. ++++++..+++.... +..|++.|.+++++.+..++|++++++|+..+.+
T Consensus 3 ~~~~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~ 81 (354)
T 3db2_A 3 YNPVGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAE 81 (354)
T ss_dssp CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHH
T ss_pred CCcceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHH
Confidence 45689999999 99999888888887 889888888764111 2358899999999986556999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
.+.+|+++|++ +++--+ ..+.++.+++. +++++.|+.+ +|.|
T Consensus 82 ~~~~al~~gk~-vl~EKP~~~~~~~~~~l~-~~a~~~~~~~~v~~~ 125 (354)
T 3db2_A 82 VIEQCARSGKH-IYVEKPISVSLDHAQRID-QVIKETGVKFLCGHS 125 (354)
T ss_dssp HHHHHHHTTCE-EEEESSSCSSHHHHHHHH-HHHHHHCCCEEEECG
T ss_pred HHHHHHHcCCE-EEEccCCCCCHHHHHHHH-HHHHHcCCeEEEeec
Confidence 99999999966 555444 45556666655 4788888644 3433
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-08 Score=92.00 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=86.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
++.+|+|||+ |++|+...+.+.+. ++++++..+++.... +..|.++|.+++++.+..++|++++++|+..+.+.
T Consensus 3 ~~~rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~ 81 (344)
T 3euw_A 3 LTLRIALFGA-GRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDL 81 (344)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHH
T ss_pred CceEEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHH
Confidence 4579999999 99999988888886 888888888764111 23478999999999885569999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+|+++|++ +++--+ ..+.++..++. +++++.|+.+
T Consensus 82 ~~~al~~gk~-v~~EKP~~~~~~~~~~l~-~~a~~~g~~~ 119 (344)
T 3euw_A 82 ITRAVERGIP-ALCEKPIDLDIEMVRACK-EKIGDGASKV 119 (344)
T ss_dssp HHHHHHTTCC-EEECSCSCSCHHHHHHHH-HHHGGGGGGE
T ss_pred HHHHHHcCCc-EEEECCCCCCHHHHHHHH-HHHHhcCCeE
Confidence 9999999977 455444 45555655555 5788888643
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=87.03 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=85.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCee-ccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-K---THLDLP-VFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~---~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |++|+...+.+.+. ++++++..+++... + +..|++ +|.+++++.+..++|++++++|+..+.+
T Consensus 4 ~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (329)
T 3evn_A 4 SKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYK 82 (329)
T ss_dssp -CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 4579999999 99999888888775 67888787765421 1 234776 8999999987556999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
.+.+|+++|++ +++=-+ ..+.++.+++. ++|++.|+.+ +|.+
T Consensus 83 ~~~~al~aGk~-Vl~EKP~a~~~~e~~~l~-~~a~~~~~~~~v~~~ 126 (329)
T 3evn_A 83 VAKAALLAGKH-VLVEKPFTLTYDQANELF-ALAESCNLFLMEAQK 126 (329)
T ss_dssp HHHHHHHTTCE-EEEESSCCSSHHHHHHHH-HHHHHTTCCEEEECS
T ss_pred HHHHHHHCCCe-EEEccCCcCCHHHHHHHH-HHHHHcCCEEEEEEc
Confidence 99999999976 555333 33455555555 5788888744 4444
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-08 Score=93.73 Aligned_cols=109 Identities=14% Similarity=0.235 Sum_probs=83.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhH-
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGA- 100 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~- 100 (306)
+++.||+|+|+ | .|+...+.+.+. ++++++.++++.... +..|+|+|.|++++.++ +|+++|++|...+
T Consensus 5 ~~~~rv~VvG~-G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~--~D~v~i~~p~~~h~ 80 (372)
T 4gmf_A 5 SPKQRVLIVGA-K-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGM--PDIACIVVRSTVAG 80 (372)
T ss_dssp --CEEEEEECS-T-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSC--CSEEEECCC--CTT
T ss_pred CCCCEEEEEeh-H-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcC--CCEEEEECCCcccc
Confidence 45789999998 7 799888887765 789998888875211 34699999999999976 9999999999877
Q ss_pred ---HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 101 ---AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 101 ---~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+++++|+++|++ |++==+ ++.++.+++. ++|+++|+.+.
T Consensus 81 ~~~~~~a~~al~aGkh-Vl~EKP-l~~~ea~~l~-~~A~~~g~~~~ 123 (372)
T 4gmf_A 81 GAGTQLARHFLARGVH-VIQEHP-LHPDDISSLQ-TLAQEQGCCYW 123 (372)
T ss_dssp SHHHHHHHHHHHTTCE-EEEESC-CCHHHHHHHH-HHHHHHTCCEE
T ss_pred hhHHHHHHHHHHcCCc-EEEecC-CCHHHHHHHH-HHHHHcCCEEE
Confidence 8999999999988 455333 5556666665 58999997543
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-07 Score=88.16 Aligned_cols=115 Identities=12% Similarity=0.033 Sum_probs=87.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |++|+...+.+.+. ++++++..+++.... +..|+ ++|.+++++.+..++|++++++|+..+.+
T Consensus 4 ~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 82 (330)
T 3e9m_A 4 DKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYS 82 (330)
T ss_dssp CCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHH
T ss_pred CeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHH
Confidence 4579999999 99999999988885 888888888764211 23477 58999999987556999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
.+.+|+++|++ +++--+ ..+.++.+++. +++++.|+.+ +|.+
T Consensus 83 ~~~~al~~gk~-vl~EKP~~~~~~e~~~l~-~~a~~~g~~~~v~~~ 126 (330)
T 3e9m_A 83 AAKLALSQGKP-VLLEKPFTLNAAEAEELF-AIAQEQGVFLMEAQK 126 (330)
T ss_dssp HHHHHHHTTCC-EEECSSCCSSHHHHHHHH-HHHHHTTCCEEECCS
T ss_pred HHHHHHHCCCe-EEEeCCCCCCHHHHHHHH-HHHHHcCCeEEEEEh
Confidence 99999999987 454333 44555555555 5788888744 3443
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.65 E-value=6.9e-08 Score=92.07 Aligned_cols=114 Identities=15% Similarity=0.253 Sum_probs=87.4
Q ss_pred CcEEEEEcCCC-CCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 30 KSKVICQGFTG-KQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg-~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+.+|+|||+ | .+|+...+.+.+. ++++++.++++.... +..|+++|.+++++.+..++|++++++|+..+.+.
T Consensus 2 ~~rigiiG~-G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~ 80 (387)
T 3moi_A 2 KIRFGICGL-GFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEH 80 (387)
T ss_dssp CEEEEEECC-SHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHH
T ss_pred ceEEEEEeC-CHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHH
Confidence 578999999 7 8888888888876 888998888864111 23489999999999876679999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+.+|+++|++ |++--+ ..+.++.+++. ++|++.|+.+ +|.+
T Consensus 81 ~~~al~aGk~-Vl~EKP~a~~~~e~~~l~-~~a~~~g~~~~v~~~ 123 (387)
T 3moi_A 81 VVQASEQGLH-IIVEKPLTLSRDEADRMI-EAVERAGVHLVVGTS 123 (387)
T ss_dssp HHHHHHTTCE-EEECSCCCSCHHHHHHHH-HHHHHHTCCEEECCC
T ss_pred HHHHHHCCCc-eeeeCCccCCHHHHHHHH-HHHHHhCCeEEEEec
Confidence 9999999966 555333 33455555555 5788888744 4443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-07 Score=88.39 Aligned_cols=110 Identities=17% Similarity=0.240 Sum_probs=85.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+.+|+|||+ |++|+...+.+.+. ++++++..+++... + +..|++ |.+++++.+..++|++++++|+..+.+.+
T Consensus 3 ~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 80 (331)
T 4hkt_A 3 TVRFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLI 80 (331)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred ceEEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHH
Confidence 468999999 99999888888886 88888888876411 1 235888 99999998754699999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+|+++|.+ +++--+ ..+.++.+++. +++++.|+.+.
T Consensus 81 ~~al~~gk~-v~~EKP~~~~~~~~~~l~-~~a~~~g~~~~ 118 (331)
T 4hkt_A 81 ERFARAGKA-IFCEKPIDLDAERVRACL-KVVSDTKAKLM 118 (331)
T ss_dssp HHHHHTTCE-EEECSCSCSSHHHHHHHH-HHHHHTTCCEE
T ss_pred HHHHHcCCc-EEEecCCCCCHHHHHHHH-HHHHHcCCeEE
Confidence 999999965 555333 44556666655 47888887543
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-07 Score=89.76 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=82.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--------cCCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEec
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--------YGTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--------~g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~v 95 (306)
+|-||+|||+ |.+|+.+.+.++. .++++++..+++.... +..|+ ++|.+++++.++.++|+++|++
T Consensus 24 kkirvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat 102 (393)
T 4fb5_A 24 KPLGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT 102 (393)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred CCccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence 5789999999 9999877654432 2678998888875221 23466 4999999998766799999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCC---CChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEG---IPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~G---f~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
|+..+.+.+.+|+++|++ |+| +. .+.++.+++. ++|++.|+.+ +|-|
T Consensus 103 P~~~H~~~a~~al~aGkh-Vl~--EKPla~~~~ea~~l~-~~a~~~g~~l~vg~~ 153 (393)
T 4fb5_A 103 PNQFHAEMAIAALEAGKH-VWC--EKPMAPAYADAERML-ATAERSGKVAALGYN 153 (393)
T ss_dssp CGGGHHHHHHHHHHTTCE-EEE--CSCSCSSHHHHHHHH-HHHHHSSSCEEECCG
T ss_pred ChHHHHHHHHHHHhcCCe-EEE--ccCCcccHHHHHHhh-hhHHhcCCccccccc
Confidence 999999999999999987 454 42 3344555555 5788988643 3433
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.7e-08 Score=90.42 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=84.9
Q ss_pred CcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCCCcee------cCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 30 KSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKGGKTH------LDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~g~~i------~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+.+|+|||+ |.+|+ .+.+.+.+. ++++++.++++. .++. .++++|.+++++.+..++|++++++|+..+.
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~-~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 79 (349)
T 3i23_A 2 TVKMGFIGF-GKSANRYHLPYVMIRETLEVKTIFDLHV-NEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHY 79 (349)
T ss_dssp CEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECTTC-CHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHH
T ss_pred eeEEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEECCCH-HHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHH
Confidence 368999999 98887 567777665 889998999873 3433 5889999999998866799999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+.+|+++|++ |++=-+ ..+.++.+++. ++|+++|+.+
T Consensus 80 ~~~~~al~aGk~-Vl~EKP~a~~~~e~~~l~-~~a~~~g~~~ 119 (349)
T 3i23_A 80 DLAKQAILAGKS-VIVEKPFCDTLEHAEELF-ALGQEKGVVV 119 (349)
T ss_dssp HHHHHHHHTTCE-EEECSCSCSSHHHHHHHH-HHHHHTTCCE
T ss_pred HHHHHHHHcCCE-EEEECCCcCCHHHHHHHH-HHHHHcCCeE
Confidence 999999999965 555233 33455555555 5788988754
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-07 Score=89.46 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=87.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++.+|+|||+ |.+|+...+.+.+. ++++++.++++.... +..|+++|.+++++.+..++|++++++|+..+.+.+
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 82 (359)
T 3e18_A 4 KKYQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELA 82 (359)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred CcCcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4579999999 99999888888876 888888878764111 235889999999998755699999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
.+|+++|.+ |++=-+ ..+.++.+++. ++|++.|+.+ +|-|
T Consensus 83 ~~al~aGkh-Vl~EKP~a~~~~ea~~l~-~~a~~~g~~~~v~~~ 124 (359)
T 3e18_A 83 ISALEAGKH-VVCEKPVTMTSEDLLAIM-DVAKRVNKHFMVHQN 124 (359)
T ss_dssp HHHHHTTCE-EEEESSCCSSHHHHHHHH-HHHHHHTCCEEEECG
T ss_pred HHHHHCCCC-EEeeCCCcCCHHHHHHHH-HHHHHhCCeEEEEee
Confidence 999999966 555333 34455555555 5788888744 3433
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-07 Score=87.51 Aligned_cols=121 Identities=8% Similarity=0.077 Sum_probs=82.8
Q ss_pred cccccccccccccccCCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCCc----eecC-eeccCCHHhhhhcC
Q psy8894 13 VAEEIYAATRPNLRLTSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGGK----THLD-LPVFNTVKEARDAT 86 (306)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g~----~i~G-ip~y~sl~el~~~~ 86 (306)
+.+++|.++ .++.+|+|||+ |..+.. ..+.+...++++++..++..... +..| .++|.+++++.+..
T Consensus 15 ~~~~~~~~M------m~~irvgiiG~-G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~ 87 (361)
T 3u3x_A 15 TENLYFQSM------MDELRFAAVGL-NHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDE 87 (361)
T ss_dssp -----------------CCEEEEECC-CSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCT
T ss_pred Cccchhhhh------ccCcEEEEECc-CHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCC
Confidence 345556443 24689999999 888854 45566667999998888864111 1233 68999999998866
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
++|++++++|+..+.+.+.+|+++|++ |++==+ ..+.++.+++. ++|++.|+.+
T Consensus 88 ~vD~V~I~tp~~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~l 142 (361)
T 3u3x_A 88 NIGLIVSAAVSSERAELAIRAMQHGKD-VLVDKPGMTSFDQLAKLR-RVQAETGRIF 142 (361)
T ss_dssp TCCEEEECCCHHHHHHHHHHHHHTTCE-EEEESCSCSSHHHHHHHH-HHHHTTCCCE
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCe-EEEeCCCCCCHHHHHHHH-HHHHHcCCEE
Confidence 799999999999999999999999976 555223 33445555555 5788888754
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=89.79 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=85.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHH-Hc-CCeEEEeeCCCCCCc----eecC--eeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAI-EY-GTKVVGGVSPGKGGK----THLD--LPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~-~~-g~~vv~~VnP~~~g~----~i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+.+|+|||+ |++|+...+.+. +. ++++++..++..... +..| .+.|.+++++.+..++|++++++|+..+.
T Consensus 23 ~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 101 (357)
T 3ec7_A 23 TLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHA 101 (357)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred eeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 579999999 999998888888 43 889888888765211 1235 68999999998765699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+++
T Consensus 102 ~~~~~al~aGk~-Vl~EKPla~~~~e~~~l~-~~a~~~g~~~ 141 (357)
T 3ec7_A 102 DVAVAALNANKY-VFCEKPLAVTAADCQRVI-EAEQKNGKRM 141 (357)
T ss_dssp HHHHHHHHTTCE-EEEESSSCSSHHHHHHHH-HHHHHHTSCC
T ss_pred HHHHHHHHCCCC-EEeecCccCCHHHHHHHH-HHHHHhCCeE
Confidence 999999999965 565444 44555656655 4788999765
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=7.1e-08 Score=90.83 Aligned_cols=112 Identities=13% Similarity=0.004 Sum_probs=86.4
Q ss_pred CCcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |++|+ ...+.+.+. ++++++..+++... + +..|++.|.+++++.+..++|++++++|+..+.+
T Consensus 26 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 104 (350)
T 3rc1_A 26 NPIRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAE 104 (350)
T ss_dssp CCEEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHH
T ss_pred CceEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHH
Confidence 3579999999 99998 577888877 88888888876311 1 2358999999999987556999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+.
T Consensus 105 ~~~~al~aGk~-Vl~EKP~a~~~~ea~~l~-~~a~~~g~~~~ 144 (350)
T 3rc1_A 105 WIDRALRAGKH-VLAEKPLTTDRPQAERLF-AVARERGLLLM 144 (350)
T ss_dssp HHHHHHHTTCE-EEEESSSCSSHHHHHHHH-HHHHHTTCCEE
T ss_pred HHHHHHHCCCc-EEEeCCCCCCHHHHHHHH-HHHHHhCCEEE
Confidence 99999999977 555333 44555656655 57888887543
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.4e-08 Score=90.60 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=87.8
Q ss_pred CCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++.+|+|||+ |++|+. +.+.+.+. ++++++.++++.. .++..+.++|.+++++.+..++|++++++|+..+.+.+
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (362)
T 3fhl_A 4 EIIKTGLAAF-GMSGQVFHAPFISTNPHFELYKIVERSKELSKERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYA 82 (362)
T ss_dssp CCEEEEESCC-SHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHH
T ss_pred CceEEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHHhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHH
Confidence 4679999999 999885 67777776 8899888777642 12234789999999998866799999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+ +|.|
T Consensus 83 ~~al~aGkh-Vl~EKP~a~~~~ea~~l~-~~a~~~g~~~~v~~~ 124 (362)
T 3fhl_A 83 GMALEAGKN-VVVEKPFTSTTKQGEELI-ALAKKKGLMLSVYQN 124 (362)
T ss_dssp HHHHHTTCE-EEEESSCCSSHHHHHHHH-HHHHHHTCCEEEECG
T ss_pred HHHHHCCCe-EEEecCCCCCHHHHHHHH-HHHHHcCCEEEEEec
Confidence 999999976 555333 34555666655 5788888754 3444
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.1e-08 Score=90.27 Aligned_cols=115 Identities=17% Similarity=0.130 Sum_probs=83.4
Q ss_pred cccCCCcEEEEEcCCCCCChHH-HHHHHHc-CCeEEEeeCCCCCC-c---eecCee-ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFH-SKQAIEY-GTKVVGGVSPGKGG-K---THLDLP-VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~-~~~l~~~-g~~vv~~VnP~~~g-~---~i~Gip-~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.+.+..||+|||+ |++|+.. .+.+++. ++++++..+++... + +-.|++ +|.|++++.+..++|+++|++|+
T Consensus 18 ~~~~~mirigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~ 96 (350)
T 4had_A 18 LYFQSMLRFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT 96 (350)
T ss_dssp ----CCEEEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred ccccCccEEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence 44566789999999 9888764 5677775 88899888886411 1 234764 89999999876679999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
..+.+.+.+|+++|++ |+|==| ..+.++.+++. ++|++.|+.+
T Consensus 97 ~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~~~~l 140 (350)
T 4had_A 97 SQHIEWSIKAADAGKH-VVCEKPLALKAGDIDAVI-AARDRNKVVV 140 (350)
T ss_dssp GGHHHHHHHHHHTTCE-EEECSCCCSSGGGGHHHH-HHHHHHTCCE
T ss_pred chhHHHHHHHHhcCCE-EEEeCCcccchhhHHHHH-HHHHHcCCce
Confidence 9999999999999976 555111 23444555555 4788888644
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.9e-07 Score=84.83 Aligned_cols=111 Identities=15% Similarity=0.108 Sum_probs=85.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCeeccCCHHhhhh---------cCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLPVFNTVKEARD---------ATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~---------~~~iDlavi~vp 96 (306)
+.+|+|||+.|.+|+...+.+.+.+.++++.++++.... ...+.++|.+++++.+ ..++|++++++|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP 82 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP 82 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence 579999999778999999998888999998888765221 1237789999999872 346999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+..+.+.+.+|+++|++ |++=-+ ..+.++.+++. ++++++|+.+
T Consensus 83 ~~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~ 127 (318)
T 3oa2_A 83 NYLHYPHIAAGLRLGCD-VICEKPLVPTPEMLDQLA-VIERETDKRL 127 (318)
T ss_dssp GGGHHHHHHHHHHTTCE-EEECSSCCSCHHHHHHHH-HHHHHHTCCE
T ss_pred cHHHHHHHHHHHHCCCe-EEEECCCcCCHHHHHHHH-HHHHHhCCEE
Confidence 99999999999999976 555222 33445555555 5788888754
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.7e-07 Score=88.60 Aligned_cols=116 Identities=17% Similarity=0.162 Sum_probs=86.9
Q ss_pred CCCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+++.+|+|||+ |++|+. +.+.+.+. ++++++..+++.. .....+.++|.+++++.+..++|++++++|+..+.+.
T Consensus 5 ~~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~ 83 (364)
T 3e82_A 5 NNTINIALIGY-GFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPL 83 (364)
T ss_dssp --CEEEEEECC-SHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHH
T ss_pred CCcceEEEECC-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHH
Confidence 45689999999 999985 67777776 8899888887641 0123478999999999885569999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+.+|+++|++ |++--+ ..+.++.+++. ++|++.|+.+ +|.|
T Consensus 84 ~~~al~aGk~-Vl~EKPla~~~~e~~~l~-~~a~~~g~~~~v~~~ 126 (364)
T 3e82_A 84 ARLALNAGKH-VVVDKPFTLDMQEARELI-ALAEEKQRLLSVFHN 126 (364)
T ss_dssp HHHHHHTTCE-EEECSCSCSSHHHHHHHH-HHHHHTTCCEEECCC
T ss_pred HHHHHHCCCc-EEEeCCCcCCHHHHHHHH-HHHHHhCCeEEEEee
Confidence 9999999966 555333 34455555555 5788998754 3443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=86.15 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=84.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-cee-cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-KTH-LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+++.+|+|||+ |++|+...+.+.+. ++++++..+++... ++. ..+++|.+++++.+..++|++++++|+..+.+.+
T Consensus 8 ~~~~~igiIG~-G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~ 86 (315)
T 3c1a_A 8 NSPVRLALIGA-GRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEIT 86 (315)
T ss_dssp -CCEEEEEEEC-TTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHHH
T ss_pred CCcceEEEECC-cHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHHH
Confidence 34579999999 99999998888886 78888787765310 111 1167899999998644599999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCe-EEccC
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSR-LIGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~-iiGPN 146 (306)
.+|+++|.+ +++--+ ..+.++..++. +++++.|+. .+|.+
T Consensus 87 ~~al~~Gk~-v~~eKP~~~~~~~~~~l~-~~a~~~g~~~~~~~~ 128 (315)
T 3c1a_A 87 LAAIASGKA-VLVEKPLTLDLAEAEAVA-AAAKATGVMVWVEHT 128 (315)
T ss_dssp HHHHHTTCE-EEEESSSCSCHHHHHHHH-HHHHHHCCCEEEECG
T ss_pred HHHHHCCCc-EEEcCCCcCCHHHHHHHH-HHHHHcCCEEEEeec
Confidence 999999965 555333 34555555554 578888864 44444
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-07 Score=90.40 Aligned_cols=113 Identities=12% Similarity=0.092 Sum_probs=86.4
Q ss_pred CCcEEEEEcC---CCCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCee---ccCCHHhhhhcCCCcEEEEecC
Q psy8894 29 SKSKVICQGF---TGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLP---VFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGa---sg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip---~y~sl~el~~~~~iDlavi~vp 96 (306)
++.+|+|||+ .|.+|+.+.+.+++. ++++++..++..... +..|++ +|.+++++.+..++|++++++|
T Consensus 19 ~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 19 APIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 5689999999 489999999888886 788988888764111 124665 8999999987556999999999
Q ss_pred chhHHHHHHHHHHcCC-----CEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 97 PPGAAKAIHEALDAEM-----PLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi-----~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+..+.+.+.+|+++|. |.|++=-+ ..+.++.+++. ++|++.|+.+
T Consensus 99 ~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~-~~a~~~g~~~ 149 (438)
T 3btv_A 99 VASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIY-KAAAERGVQT 149 (438)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHH-HHHHTTTCEE
T ss_pred cHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHH-HHHHHcCCeE
Confidence 9999999999999993 56776332 33455555555 5788888754
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-07 Score=87.71 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=85.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-c---eecC----eeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-K---THLD----LPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~---~i~G----ip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+++.+|+|||+ |++|+...+.+.+. ++++++..+++... + +..| .++|.+++++.+..++|++++++|+.
T Consensus 4 ~~~~~vgiiG~-G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 4 ETQIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 82 (362)
T ss_dssp --CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred CCceEEEEECc-hHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence 35679999999 99999888888875 78888888876411 1 1224 57899999998654699999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE-ccC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI-GPN 146 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii-GPN 146 (306)
.+.+.+.+|+++|++ |++--+ ..+.++.+++. ++|++.|+.+. |.+
T Consensus 83 ~h~~~~~~al~aGk~-V~~EKP~a~~~~e~~~l~-~~a~~~g~~~~~~~~ 130 (362)
T 1ydw_A 83 LHVEWAIKAAEKGKH-ILLEKPVAMNVTEFDKIV-DACEANGVQIMDGTM 130 (362)
T ss_dssp GHHHHHHHHHTTTCE-EEECSSCSSSHHHHHHHH-HHHHTTTCCEEECCC
T ss_pred HHHHHHHHHHHCCCe-EEEecCCcCCHHHHHHHH-HHHHHcCCEEEEEEe
Confidence 999999999999976 555332 34455555554 57899997543 443
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.1e-07 Score=84.45 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=84.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH----cCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE----YGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~----~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+++.+|+|||+ |.+|+...+.+.+ .++++++..+++.. .+..|++ |.+++++.+..++|++++++|+..+.+.
T Consensus 5 ~~~~rvgiIG~-G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-a~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~ 81 (294)
T 1lc0_A 5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDY 81 (294)
T ss_dssp CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHH
T ss_pred CCcceEEEEEE-cHHHHHHHHHHhccccCCCEEEEEEECchHH-HHHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHH
Confidence 34679999999 9999988777654 37788888887542 3456777 7899999875569999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+.+|+++|++ |++=-+ ..+.++.+++. ++++++|+.+ +|++
T Consensus 82 ~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~~~~~~ 124 (294)
T 1lc0_A 82 IRQFLQAGKH-VLVEYPMTLSFAAAQELW-ELAAQKGRVLHEEHV 124 (294)
T ss_dssp HHHHHHTTCE-EEEESCSCSCHHHHHHHH-HHHHHTTCCEEEECG
T ss_pred HHHHHHCCCc-EEEeCCCCCCHHHHHHHH-HHHHHhCCEEEEEEh
Confidence 9999999986 555222 22344555554 5788888753 3444
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=87.99 Aligned_cols=109 Identities=11% Similarity=0.184 Sum_probs=84.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.+|+|||+ |++|+...+.+.+. ++++++..+++.... +..|++ +|.+++++.+..++|++++++|+..+.+.+
T Consensus 3 ~rvgiIG~-G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~ 81 (344)
T 3ezy_A 3 LRIGVIGL-GRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELV 81 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHH
Confidence 58999999 99999888888775 788888888764111 234664 899999998855699999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+|+++|++ +++--+ ..+.++.+++. +++++.|+.+
T Consensus 82 ~~al~~gk~-v~~EKP~~~~~~e~~~l~-~~a~~~g~~~ 118 (344)
T 3ezy_A 82 IACAKAKKH-VFCEKPLSLNLADVDRMI-EETKKADVIL 118 (344)
T ss_dssp HHHHHTTCE-EEEESCSCSCHHHHHHHH-HHHHHHTCCE
T ss_pred HHHHhcCCe-EEEECCCCCCHHHHHHHH-HHHHHhCCcE
Confidence 999999966 555444 55566666655 4788888644
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-07 Score=88.06 Aligned_cols=110 Identities=13% Similarity=0.202 Sum_probs=85.3
Q ss_pred cEEEEEcCCCCCChHHHHHHH-Hc-CCeEEEeeCCCCCC-c---eecC--eeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI-EY-GTKVVGGVSPGKGG-K---THLD--LPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~-~~-g~~vv~~VnP~~~g-~---~i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|||+ |++|+...+.+. +. ++++++..+++... + +..| .+.|.+++++.+..++|++++++|+..+.+
T Consensus 3 ~rigiIG~-G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (344)
T 3mz0_A 3 LRIGVIGT-GAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHES 81 (344)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHH
T ss_pred EEEEEECc-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHH
Confidence 68999999 999999888888 53 88888888886411 1 2246 689999999987657999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+|+++|++ +++=-+ ..+.++.+++. ++|++.|+.++
T Consensus 82 ~~~~al~~Gk~-vl~EKP~a~~~~e~~~l~-~~a~~~g~~~~ 121 (344)
T 3mz0_A 82 SVLKAIKAQKY-VFCEKPLATTAEGCMRIV-EEEIKVGKRLV 121 (344)
T ss_dssp HHHHHHHTTCE-EEECSCSCSSHHHHHHHH-HHHHHHSSCCE
T ss_pred HHHHHHHCCCc-EEEcCCCCCCHHHHHHHH-HHHHHHCCEEE
Confidence 99999999965 555333 44555666655 57889998653
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=86.97 Aligned_cols=114 Identities=16% Similarity=0.137 Sum_probs=85.3
Q ss_pred cCCCcEEEEEcCCC-CCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEecCch
Q psy8894 27 LTSKSKVICQGFTG-KQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 27 ~~~~~~VaVvGasg-~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
-+++.+|+|||+ | .+|+...+.+.+. ++++++..+++.... +..|+ ++|.+++++.+..++|++++++|+.
T Consensus 15 ~~~~irvgiIG~-G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~ 93 (340)
T 1zh8_A 15 PLRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVE 93 (340)
T ss_dssp -CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGG
T ss_pred CCCceeEEEEec-CHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCch
Confidence 456789999999 7 7888888888775 678888888764111 12365 7999999998765699999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 GAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+.+.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+.
T Consensus 94 ~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~~ 137 (340)
T 1zh8_A 94 LNLPFIEKALRKGVH-VICEKPISTDVETGKKVV-ELSEKSEKTVY 137 (340)
T ss_dssp GHHHHHHHHHHTTCE-EEEESSSSSSHHHHHHHH-HHHHHCSSCEE
T ss_pred HHHHHHHHHHHCCCc-EEEeCCCCCCHHHHHHHH-HHHHHcCCeEE
Confidence 999999999999975 565333 23445555554 57888887443
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-07 Score=83.40 Aligned_cols=112 Identities=13% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCCCCCh-HHHHHHHHcCCeEEEeeCCCCCCc-----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGT-FHSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~-~~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |+++. ...+.+...++++++..+++.... +..+.++|.+++++.+..++|++++++|+..+.+
T Consensus 3 ~~~rvgiiG~-G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 81 (336)
T 2p2s_A 3 KKIRFAAIGL-AHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAE 81 (336)
T ss_dssp -CCEEEEECC-SSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHH
T ss_pred CccEEEEECC-ChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHH
Confidence 3579999999 88875 345666666999888877764211 1226789999999987556999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+|+++|.+ |++=-+ ..+.++.+++. ++|++.|+.+.
T Consensus 82 ~~~~al~aGkh-Vl~EKP~a~~~~e~~~l~-~~a~~~g~~~~ 121 (336)
T 2p2s_A 82 LALRTLDAGKD-FFTAKPPLTTLEQLDAVQ-RRVAETGRKFA 121 (336)
T ss_dssp HHHHHHHTTCE-EEECSSCCSCHHHHHHHH-HHHHHHCCCEE
T ss_pred HHHHHHHCCCc-EEEeCCCCCCHHHHHHHH-HHHHHcCCEEE
Confidence 99999999976 555222 23444555554 57888887554
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-07 Score=84.85 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=82.4
Q ss_pred CCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |++|+. ..+.+.+. ++++++.++++.... +..|+++|.+++++.. ++|++++++|+..+.+
T Consensus 4 ~~~~vgiiG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~--~~D~V~i~tp~~~h~~ 80 (319)
T 1tlt_A 4 KKLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAA--SCDAVFVHSSTASHFD 80 (319)
T ss_dssp -CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHT--TCSEEEECSCTTHHHH
T ss_pred CcceEEEECC-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhc--CCCEEEEeCCchhHHH
Confidence 3579999999 999986 77777764 788888887765211 1247888999998833 5999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+|+++|++ +++--+ ..+.++.+++. ++|++.|+.+.
T Consensus 81 ~~~~al~~G~~-v~~eKP~~~~~~~~~~l~-~~a~~~g~~~~ 120 (319)
T 1tlt_A 81 VVSTLLNAGVH-VCVDKPLAENLRDAERLV-ELAARKKLTLM 120 (319)
T ss_dssp HHHHHHHTTCE-EEEESSSCSSHHHHHHHH-HHHHHTTCCEE
T ss_pred HHHHHHHcCCe-EEEeCCCCCCHHHHHHHH-HHHHHcCCeEE
Confidence 99999999976 454333 44555555555 57888887553
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=88.74 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCC--ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGG--KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g--~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++.+|+|||+ |++|+. +.+.+.+. ++++++..++.... .+..+.++|.+++++.+..++|++++++|+..+.+.+
T Consensus 4 ~~~rvgiiG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~ 82 (358)
T 3gdo_A 4 DTIKVGILGY-GLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHT 82 (358)
T ss_dssp TCEEEEEECC-SHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHH
T ss_pred CcceEEEEcc-CHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHH
Confidence 4679999999 998885 67777766 88998888876411 1234789999999998855699999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
..|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+ +|.|
T Consensus 83 ~~al~aGkh-Vl~EKPla~~~~e~~~l~-~~a~~~g~~~~v~~~ 124 (358)
T 3gdo_A 83 MACIQAGKH-VVMEKPMTATAEEGETLK-RAADEKGVLLSVYHN 124 (358)
T ss_dssp HHHHHTTCE-EEEESSCCSSHHHHHHHH-HHHHHHTCCEEEECG
T ss_pred HHHHHcCCe-EEEecCCcCCHHHHHHHH-HHHHHcCCeEEEeee
Confidence 999999965 555333 34455556655 5788888744 3443
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=90.18 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=85.4
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc---------CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEE
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY---------GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATV 92 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~---------g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlav 92 (306)
++++.||+|||+ |.+|+.+.+.+++. +.++++..+++.... +..|+ ++|.+++++.+..++|+++
T Consensus 23 Ms~klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~ 101 (412)
T 4gqa_A 23 MSARLNIGLIGS-GFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVD 101 (412)
T ss_dssp --CEEEEEEECC-SHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEE
T ss_pred ccccceEEEEcC-cHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEE
Confidence 455689999999 99999887777653 457888888864111 23455 5999999998766799999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCC-eEEccC
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKS-RLIGPN 146 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi-~iiGPN 146 (306)
|++|+..+.+.+.+|+++|++ |+|==+ ..+.++.+++. ++|++.|+ -.+|-|
T Consensus 102 I~tp~~~H~~~~~~al~aGkh-Vl~EKP~a~~~~ea~~l~-~~a~~~g~~~~v~~~ 155 (412)
T 4gqa_A 102 ITSPNHLHYTMAMAAIAAGKH-VYCEKPLAVNEQQAQEMA-QAARRAGVKTMVAFN 155 (412)
T ss_dssp ECSCGGGHHHHHHHHHHTTCE-EEEESCSCSSHHHHHHHH-HHHHHHTCCEEEECG
T ss_pred ECCCcHHHHHHHHHHHHcCCC-eEeecCCcCCHHHHHHHH-HHHHHhCCeeeeccc
Confidence 999999999999999999976 555222 23445555555 47888886 444544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=9.3e-08 Score=89.22 Aligned_cols=113 Identities=12% Similarity=0.040 Sum_probs=83.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCcee-cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTH-LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++.||+|+|+ |++|+.+.+.+.+. ++++++.++++... .. .|+++|.+++++.. ++|++++++|+..+.+.+..
T Consensus 2 ~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~~gv~~~~d~~~ll~--~~DvViiatp~~~h~~~~~~ 77 (320)
T 1f06_A 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTKTPVFDVADVDKHAD--DVDVLFLCMGSATDIPEQAP 77 (320)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSSSCEEEGGGGGGTTT--TCSEEEECSCTTTHHHHHHH
T ss_pred CCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhcCCCceeCCHHHHhc--CCCEEEEcCCcHHHHHHHHH
Confidence 3578999998 99999999888876 78888887776321 11 37888999998873 49999999999999999999
Q ss_pred HHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcC-CeEEccC
Q psy8894 107 ALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSK-SRLIGPN 146 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~g-i~iiGPN 146 (306)
++++|++. ++-++ +.+.++..+.+.+++++.+ +.+++.+
T Consensus 78 al~aG~~V-v~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~ 118 (320)
T 1f06_A 78 KFAQFACT-VDTYDNHRDIPRHRQVMNEAATAAGNVALVSTG 118 (320)
T ss_dssp HHTTTSEE-ECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCS
T ss_pred HHHCCCEE-EECCCCcCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 99999874 44444 4444555233345677766 4555544
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=87.56 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=82.1
Q ss_pred CcEEEEEcCCCCCChH-HHH-HHHHc-CCeEEEeeCCCCCC----ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTF-HSK-QAIEY-GTKVVGGVSPGKGG----KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~-~~~-~l~~~-g~~vv~~VnP~~~g----~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+.+|+|||+ |++|+. +.+ .+... ++++++.+++.... .+..+.++|.+++++.+..++|++++++|+..+.+
T Consensus 2 ~~rvgiiG~-G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~ 80 (345)
T 3f4l_A 2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345)
T ss_dssp CEEEEEECC-SHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHH
T ss_pred ceEEEEEec-CHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHH
Confidence 468999999 999974 666 33443 88998888876421 12347899999999987657999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+.+|+++|++ |++--+ ..+.++.+++. ++++++|+.+
T Consensus 81 ~~~~al~aGk~-Vl~EKP~a~~~~e~~~l~-~~a~~~g~~~ 119 (345)
T 3f4l_A 81 YAKRALEAGKN-VLVEKPFTPTLAQAKELF-ALAKSKGLTV 119 (345)
T ss_dssp HHHHHHHTTCE-EEECSSSCSSHHHHHHHH-HHHHHHTCCE
T ss_pred HHHHHHHcCCc-EEEeCCCCCCHHHHHHHH-HHHHHcCCeE
Confidence 99999999965 555222 33455555555 5788888754
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=85.23 Aligned_cols=113 Identities=17% Similarity=0.333 Sum_probs=84.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHH-Hc-CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAI-EY-GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~-~~-g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+++.+|+|||+ |++|+.+.+.+. +. ++++++..+++.... +..|. ++|.+++++.+..++|++++++|+..+
T Consensus 6 ~~~~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h 84 (346)
T 3cea_A 6 RKPLRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH 84 (346)
T ss_dssp CCCEEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH
T ss_pred CCcceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH
Confidence 35679999999 999999888887 54 888888878764111 12466 689999999864469999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhc-CCeEE
Q psy8894 101 AKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQS-KSRLI 143 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~-gi~ii 143 (306)
.+.+.+|+++|.+ +++--+ ..+.++.+++. +++++. |+.+.
T Consensus 85 ~~~~~~al~~G~~-v~~eKp~~~~~~~~~~l~-~~a~~~~~~~~~ 127 (346)
T 3cea_A 85 PEMTIYAMNAGLN-VFCEKPLGLDFNEVDEMA-KVIKSHPNQIFQ 127 (346)
T ss_dssp HHHHHHHHHTTCE-EEECSCCCSCHHHHHHHH-HHHHTCTTSCEE
T ss_pred HHHHHHHHHCCCE-EEEcCCCCCCHHHHHHHH-HHHHhCCCCeEE
Confidence 9999999999965 554222 33444555554 578888 87654
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.3e-07 Score=85.38 Aligned_cols=109 Identities=11% Similarity=0.101 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++.+|+|||+ |++|+. ..+.+.+. ++++++..+++.... +..|++.|.+++++.++ +|++++++|+..+.+
T Consensus 5 ~~~~igiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~--~D~V~i~tp~~~h~~ 81 (308)
T 3uuw_A 5 KNIKMGMIGL-GSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKK--CDCIFLHSSTETHYE 81 (308)
T ss_dssp CCCEEEEECC-SHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTT--CSEEEECCCGGGHHH
T ss_pred ccCcEEEEec-CHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhc--CCEEEEeCCcHhHHH
Confidence 3579999999 999986 67777774 889988888764111 23588889999999884 999999999999999
Q ss_pred HHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 103 AIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+.+|+++|++ +++=-+ ..+.++.+++. +++++.|+.+
T Consensus 82 ~~~~al~~gk~-vl~EKP~~~~~~~~~~l~-~~a~~~g~~~ 120 (308)
T 3uuw_A 82 IIKILLNLGVH-VYVDKPLASTVSQGEELI-ELSTKKNLNL 120 (308)
T ss_dssp HHHHHHHTTCE-EEECSSSSSSHHHHHHHH-HHHHHHTCCE
T ss_pred HHHHHHHCCCc-EEEcCCCCCCHHHHHHHH-HHHHHcCCEE
Confidence 99999999987 454212 33455555554 4788888644
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=86.69 Aligned_cols=110 Identities=13% Similarity=0.130 Sum_probs=75.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCee--ccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLP--VFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++.+|+|||+ |++|+...+.+++. ++++++.++++....+..|++ .|.++.+. .++|++++++|+..+.+.+.
T Consensus 8 ~~irv~IIG~-G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~~g~~~~~~~~l~~~---~~~DvViiatp~~~h~~~~~ 83 (304)
T 3bio_A 8 KKIRAAIVGY-GNIGRYALQALREAPDFEIAGIVRRNPAEVPFELQPFRVVSDIEQL---ESVDVALVCSPSREVERTAL 83 (304)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHHCTTEEEEEEECC-------CCTTSCEESSGGGS---SSCCEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECC-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHcCCCcCCHHHHHhC---CCCCEEEECCCchhhHHHHH
Confidence 3679999999 99999888888875 888887777653212225655 24444444 24999999999999999999
Q ss_pred HHHHcCCCEEEEecC--CCChhHHHHHHHHHHHhcCCe-EEc
Q psy8894 106 EALDAEMPLIVCITE--GIPQLDMVKVKHRLIRQSKSR-LIG 144 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~--Gf~e~~~~~~~~~~ar~~gi~-iiG 144 (306)
.|+++|++. ++-.+ +...++..++. +.+++.|+. ++|
T Consensus 84 ~al~aG~~V-i~ekP~~a~~~~~~~~l~-~~a~~~g~~~~v~ 123 (304)
T 3bio_A 84 EILKKGICT-ADSFDIHDGILALRRSLG-DAAGKSGAAAVIA 123 (304)
T ss_dssp HHHTTTCEE-EECCCCGGGHHHHHHHHH-HHHHHHTCEEECS
T ss_pred HHHHcCCeE-EECCCCCCCCHHHHHHHH-HHHHhCCCEEEEe
Confidence 999999874 44343 33344445554 467888864 444
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.1e-07 Score=83.14 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCChHH-HHHHHHcCCeEEEeeCCCCCCc----eecCee-ccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 32 KVICQGFTGKQGTFH-SKQAIEYGTKVVGGVSPGKGGK----THLDLP-VFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 32 ~VaVvGasg~~G~~~-~~~l~~~g~~vv~~VnP~~~g~----~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+|+|||+ |++|+.. .+.+.+.++++++..+++.... +..|++ +|.+++++.+..++|++++++|+..+.+.+.
T Consensus 2 ~vgiiG~-G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~ 80 (332)
T 2glx_A 2 RWGLIGA-STIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL 80 (332)
T ss_dssp EEEEESC-CHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred eEEEEcc-cHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence 7999999 9999987 7777767889888888764111 124665 8999999976446999999999999999999
Q ss_pred HHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 106 EALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+|+++|.+ +++-.+ ..+.++.+++. ++|++.|+.+ +|++
T Consensus 81 ~al~~Gk~-v~~ekP~~~~~~~~~~l~-~~a~~~g~~~~~~~~ 121 (332)
T 2glx_A 81 AAIRAGKH-VLCEKPLAMTLEDAREMV-VAAREAGVVLGTNHH 121 (332)
T ss_dssp HHHHTTCE-EEECSSSCSSHHHHHHHH-HHHHHHTCCEEECCC
T ss_pred HHHHCCCe-EEEeCCCcCCHHHHHHHH-HHHHHcCCEEEEeeh
Confidence 99999965 555332 33455555554 5788888754 4544
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.48 E-value=6.5e-07 Score=88.05 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=84.5
Q ss_pred CCcEEEEEcCC---CCCChHHHHHHHHc--CCeEEEeeCCCCCCc----eecCee---ccCCHHhhhhcCCCcEEEEecC
Q psy8894 29 SKSKVICQGFT---GKQGTFHSKQAIEY--GTKVVGGVSPGKGGK----THLDLP---VFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGas---g~~G~~~~~~l~~~--g~~vv~~VnP~~~g~----~i~Gip---~y~sl~el~~~~~iDlavi~vp 96 (306)
++.+|+|||++ |.+|+...+.+.+. ++++++..++..... +..|++ +|.+++++.+..++|++++++|
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence 46799999995 67777778888875 788888888764111 234665 9999999987556999999999
Q ss_pred chhHHHHHHHHHHcCC-----CEEEEecC-CCChhHHHHHHHHHHHhcC-CeE
Q psy8894 97 PPGAAKAIHEALDAEM-----PLIVCITE-GIPQLDMVKVKHRLIRQSK-SRL 142 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi-----~~vvi~t~-Gf~e~~~~~~~~~~ar~~g-i~i 142 (306)
+..+.+.+.+|+++|. |.|+|=-+ ..+.++.+++. ++|++.| +.+
T Consensus 118 ~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~-~~a~~~g~~~~ 169 (479)
T 2nvw_A 118 VPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY-SISQQRANLQT 169 (479)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH-HHHHTCTTCEE
T ss_pred cHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHH-HHHHHcCCeEE
Confidence 9999999999999993 66776332 23444555554 5788888 644
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.45 E-value=6e-07 Score=83.62 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=83.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCC-c---eecCee-ccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGG-K---THLDLP-VFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g-~---~i~Gip-~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+.||+|||+ |++|+...+.+.+. ++++++..+++... + +..|++ +|.+++++.+..++|++++++|+..+.
T Consensus 2 ~~rigiiG~-G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 80 (334)
T 3ohs_X 2 ALRWGIVSV-GLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHK 80 (334)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred ccEEEEECc-hHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHH
Confidence 468999998 99998888888765 35788888876411 1 234774 899999998865699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.+.+|+++|.+ |++=-+ ..+.++.+++. ++|+++|+.+.
T Consensus 81 ~~~~~al~~Gkh-Vl~EKP~a~~~~e~~~l~-~~a~~~~~~~~ 121 (334)
T 3ohs_X 81 AAVMLCLAAGKA-VLCEKPMGVNAAEVREMV-TEARSRGLFLM 121 (334)
T ss_dssp HHHHHHHHTTCE-EEEESSSSSSHHHHHHHH-HHHHHTTCCEE
T ss_pred HHHHHHHhcCCE-EEEECCCCCCHHHHHHHH-HHHHHhCCEEE
Confidence 999999999965 565333 33445555555 57888887443
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.6e-07 Score=84.95 Aligned_cols=111 Identities=16% Similarity=0.116 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCC-----ceecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 29 SKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGG-----KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g-----~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
++.+|+|||+ |++|+. ..+.+.+. ++++++..+++... ++..+.++|.+++++.+..++|++++++|+..+.
T Consensus 4 ~~~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~ 82 (359)
T 3m2t_A 4 SLIKVGLVGI-GAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHF 82 (359)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHH
T ss_pred CcceEEEECC-CHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHH
Confidence 3579999999 998875 67788776 88888888876411 1223678999999998865699999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+.+|+++|++ |++=-+ ..+.++.+++. +++++.|+.+
T Consensus 83 ~~~~~al~aGkh-Vl~EKPla~~~~e~~~l~-~~a~~~g~~~ 122 (359)
T 3m2t_A 83 EMGLLAMSKGVN-VFVEKPPCATLEELETLI-DAARRSDVVS 122 (359)
T ss_dssp HHHHHHHHTTCE-EEECSCSCSSHHHHHHHH-HHHHHHTCCE
T ss_pred HHHHHHHHCCCe-EEEECCCcCCHHHHHHHH-HHHHHcCCEE
Confidence 999999999977 454222 33444555554 4788888643
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=3.5e-07 Score=88.72 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=85.0
Q ss_pred CCCcEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCCCc----eecCee-----ccCCHHhhhhcCCCcEEEEecC
Q psy8894 28 TSKSKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKGGK----THLDLP-----VFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip-----~y~sl~el~~~~~iDlavi~vp 96 (306)
+++.+|+|||+ |++|+ .+.+.+.+. ++++++.++++.... +..|++ +|.+++++.+..++|++++++|
T Consensus 81 ~~~irigiIG~-G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp 159 (433)
T 1h6d_A 81 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 159 (433)
T ss_dssp CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred CCceEEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCC
Confidence 34679999999 99997 777877775 788888888764111 123554 7999999987546999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
+..+.+.+.+|+++|++ |++--+ ..+.++.+++. +++++.|+.+ +|.+
T Consensus 160 ~~~h~~~~~~al~aGk~-Vl~EKPla~~~~e~~~l~-~~a~~~g~~~~v~~~ 209 (433)
T 1h6d_A 160 NSLHAEFAIRAFKAGKH-VMCEKPMATSVADCQRMI-DAAKAANKKLMIGYR 209 (433)
T ss_dssp GGGHHHHHHHHHHTTCE-EEECSSCCSSHHHHHHHH-HHHHHHTCCEEECCG
T ss_pred chhHHHHHHHHHHCCCc-EEEcCCCCCCHHHHHHHH-HHHHHhCCeEEEEec
Confidence 99999999999999976 555222 34455555554 5788888644 4444
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.9e-06 Score=82.39 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCcEEEEEcCCCC---CChHHHHHHHHc-CCeEEE-eeCCCCCCc----eecCe---eccCCHHhhhhc-----CCCcEE
Q psy8894 29 SKSKVICQGFTGK---QGTFHSKQAIEY-GTKVVG-GVSPGKGGK----THLDL---PVFNTVKEARDA-----TGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~---~G~~~~~~l~~~-g~~vv~-~VnP~~~g~----~i~Gi---p~y~sl~el~~~-----~~iDla 91 (306)
++.+|+|||+ |. +|+.+...+... ++++++ ..++..... +..|+ ++|.+++++.+. .++|++
T Consensus 11 ~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V 89 (398)
T 3dty_A 11 QPIRWAMVGG-GSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAV 89 (398)
T ss_dssp SCEEEEEEEC-CTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEE
T ss_pred CcceEEEEcC-CccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEE
Confidence 4689999999 88 999888877766 588887 457653111 23577 699999999764 359999
Q ss_pred EEecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 92 VIYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
++++|+..+.+.+.+|+++|++ |++=-+ ..+.++.+++. ++++++|+.+
T Consensus 90 ~i~tp~~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~ 139 (398)
T 3dty_A 90 SIATPNGTHYSITKAALEAGLH-VVCEKPLCFTVEQAENLR-ELSHKHNRIV 139 (398)
T ss_dssp EEESCGGGHHHHHHHHHHTTCE-EEECSCSCSCHHHHHHHH-HHHHHTTCCE
T ss_pred EECCCcHHHHHHHHHHHHCCCe-EEEeCCCcCCHHHHHHHH-HHHHHcCCeE
Confidence 9999999999999999999976 554111 23445555555 5788888744
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.4e-06 Score=83.87 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=84.3
Q ss_pred CCCcEEEEEcCCCC---CChHHHHHHHHc-CCeEEE-eeCCCCCCc----eecCe---eccCCHHhhhhc-----CCCcE
Q psy8894 28 TSKSKVICQGFTGK---QGTFHSKQAIEY-GTKVVG-GVSPGKGGK----THLDL---PVFNTVKEARDA-----TGAEA 90 (306)
Q Consensus 28 ~~~~~VaVvGasg~---~G~~~~~~l~~~-g~~vv~-~VnP~~~g~----~i~Gi---p~y~sl~el~~~-----~~iDl 90 (306)
.++.+|+|||+ |+ +|+.+.+.+... ++++++ .+++..... +..|+ ++|.+++++.+. .++|+
T Consensus 35 m~~~rvgiiG~-G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~ 113 (417)
T 3v5n_A 35 QKRIRLGMVGG-GSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEA 113 (417)
T ss_dssp CCCEEEEEESC-C--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSE
T ss_pred CCcceEEEEcC-CCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcE
Confidence 35789999999 88 888887777766 578886 567753111 23477 599999999875 46999
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCe-EEccC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSR-LIGPN 146 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~-iiGPN 146 (306)
+++++|+..+.+++.+|+++|++ |+|=-+ ..+.++.+++. +++++.|+. .+|-|
T Consensus 114 V~I~tp~~~H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~~~v~~~ 169 (417)
T 3v5n_A 114 VAIVTPNHVHYAAAKEFLKRGIH-VICDKPLTSTLADAKKLK-KAADESDALFVLTHN 169 (417)
T ss_dssp EEECSCTTSHHHHHHHHHTTTCE-EEEESSSCSSHHHHHHHH-HHHHHCSSCEEEECG
T ss_pred EEECCCcHHHHHHHHHHHhCCCe-EEEECCCcCCHHHHHHHH-HHHHHcCCEEEEEec
Confidence 99999999999999999999977 555223 33455555555 578888874 44444
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.7e-07 Score=80.97 Aligned_cols=110 Identities=12% Similarity=0.067 Sum_probs=88.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
...+||+++|. |++|+...+. . ++++++..+ ...+ ++ |+.+..+++++.. ++|++|-|.+++.+.+.+..+
T Consensus 10 ~~~~rV~i~G~-GaIG~~v~~~--~-~leLv~v~~-~k~g-el-gv~a~~d~d~lla--~pD~VVe~A~~~av~e~~~~i 80 (253)
T 1j5p_A 10 HHHMTVLIIGM-GNIGKKLVEL--G-NFEKIYAYD-RISK-DI-PGVVRLDEFQVPS--DVSTVVECASPEAVKEYSLQI 80 (253)
T ss_dssp -CCCEEEEECC-SHHHHHHHHH--S-CCSEEEEEC-SSCC-CC-SSSEECSSCCCCT--TCCEEEECSCHHHHHHHHHHH
T ss_pred cccceEEEECc-CHHHHHHHhc--C-CcEEEEEEe-cccc-cc-CceeeCCHHHHhh--CCCEEEECCCHHHHHHHHHHH
Confidence 44689999999 9999999887 4 899888777 3323 44 8888899999985 499999999999999999999
Q ss_pred HHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 108 LDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 108 ~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
+++|+..++ .+.| +...+..+.++++|++.|-++..|.-
T Consensus 81 L~aG~dvv~-~S~gaLad~~l~~~L~~aA~~gg~~l~vpSG 120 (253)
T 1j5p_A 81 LKNPVNYII-ISTSAFADEVFRERFFSELKNSPARVFFPSG 120 (253)
T ss_dssp TTSSSEEEE-CCGGGGGSHHHHHHHHHHHHTCSCEEECCCT
T ss_pred HHCCCCEEE-cChhhhcCHHHHHHHHHHHHHCCCeEEecCC
Confidence 999999655 5666 45555556666789999999977653
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=84.96 Aligned_cols=115 Identities=15% Similarity=0.080 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc-e------ecC---eeccC----CHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK-T------HLD---LPVFN----TVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~-~------i~G---ip~y~----sl~el~~~~~iDlavi 93 (306)
++.+|+|||+ |.+|+.+.+.+.+. ++++++..+++.... + ..| .++|. +++++.+..++|++++
T Consensus 19 ~~~rvgiIG~-G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i 97 (444)
T 2ixa_A 19 KKVRIAFIAV-GLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFV 97 (444)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEE
T ss_pred CCceEEEEec-CHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEE
Confidence 4679999998 99998888888875 888988888764111 1 124 57898 9999987556999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE-EccC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL-IGPN 146 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i-iGPN 146 (306)
++|+..+.+.+.+|+++|++ |++=-+ ..+.++.+++. ++|++.|+.+ ++-|
T Consensus 98 ~tp~~~h~~~~~~al~aGkh-V~~EKP~a~~~~ea~~l~-~~a~~~g~~~~v~~~ 150 (444)
T 2ixa_A 98 SSPWEWHHEHGVAAMKAGKI-VGMEVSGAITLEECWDYV-KVSEQTGVPLMALEN 150 (444)
T ss_dssp CCCGGGHHHHHHHHHHTTCE-EEECCCCCSSHHHHHHHH-HHHHHHCCCEEECCG
T ss_pred cCCcHHHHHHHHHHHHCCCe-EEEeCCCcCCHHHHHHHH-HHHHHhCCeEEEEec
Confidence 99999999999999999975 554222 22344555554 4788888744 4544
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=98.28 E-value=8.2e-07 Score=84.14 Aligned_cols=117 Identities=13% Similarity=0.136 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCCChH-HH----HHHHHcC-CeEE---------EeeCCCCCC-c---eecCee-ccCCHHhhhhcCC
Q psy8894 28 TSKSKVICQGFTGKQGTF-HS----KQAIEYG-TKVV---------GGVSPGKGG-K---THLDLP-VFNTVKEARDATG 87 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~-~~----~~l~~~g-~~vv---------~~VnP~~~g-~---~i~Gip-~y~sl~el~~~~~ 87 (306)
.++.+|+|+|+.|.+|+. +. +.+.+.+ +.++ +.++++... + +..|++ +|.+++++.+..+
T Consensus 4 ~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~ 83 (383)
T 3oqb_A 4 TQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKN 83 (383)
T ss_dssp CEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSS
T ss_pred CceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCC
Confidence 356799999966999987 65 6666653 3321 355554311 1 235774 8999999998667
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCe-EEccC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSR-LIGPN 146 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~-iiGPN 146 (306)
+|++++++|+..+.+.+.+|+++|++ |++=-+ ..+.++.+++. ++|+++|+. .++.|
T Consensus 84 iD~V~i~tp~~~h~~~~~~al~~Gk~-V~~EKP~a~~~~~~~~l~-~~a~~~~~~~~v~~~ 142 (383)
T 3oqb_A 84 DTMFFDAATTQARPGLLTQAINAGKH-VYCEKPIATNFEEALEVV-KLANSKGVKHGTVQD 142 (383)
T ss_dssp CCEEEECSCSSSSHHHHHHHHTTTCE-EEECSCSCSSHHHHHHHH-HHHHHTTCCEEECCG
T ss_pred CCEEEECCCchHHHHHHHHHHHCCCe-EEEcCCCCCCHHHHHHHH-HHHHHcCCeEEEEec
Confidence 99999999999999999999999977 454112 34455666655 478888874 34444
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.3e-06 Score=81.46 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=79.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Ccee------cC--eeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTH------LD--LPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i------~G--ip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.||+|||+ |..++...+.+ ..++++++..++... .+.. .| .++|.+++++.+..++|++++++|+..
T Consensus 2 ~~rvgiiG~-G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~ 79 (337)
T 3ip3_A 2 SLKICVIGS-SGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSL 79 (337)
T ss_dssp CEEEEEECS-SSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHH
T ss_pred ceEEEEEcc-chhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcch
Confidence 368999999 77777666666 558899988887531 1111 24 479999999987556999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCe
Q psy8894 100 AAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSR 141 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ 141 (306)
+.+.+.+|+++|++ |++==+ ..+.++.+++. ++|++.|..
T Consensus 80 H~~~~~~al~aGkh-Vl~EKPla~~~~ea~~l~-~~a~~~g~~ 120 (337)
T 3ip3_A 80 NGKILLEALERKIH-AFVEKPIATTFEDLEKIR-SVYQKVRNE 120 (337)
T ss_dssp HHHHHHHHHHTTCE-EEECSSSCSSHHHHHHHH-HHHHHHTTT
T ss_pred HHHHHHHHHHCCCc-EEEeCCCCCCHHHHHHHH-HHHHHhCCc
Confidence 99999999999977 454111 23344555555 578888865
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.9e-07 Score=83.90 Aligned_cols=115 Identities=11% Similarity=0.068 Sum_probs=79.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc--------CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY--------GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~--------g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~vp 96 (306)
+-||+|||+ |.+|+.+.+.+++. +.++++..+++.... +..|+ ++|.+++++.+..++|+++|++|
T Consensus 6 klrvgiIG~-G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 6 NLGIGLIGY-AFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEEEECH-HHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred cCcEEEEcC-CHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 468999999 99998887766553 236888888764111 23465 58999999987667999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHH--HHHHhcCCe-EEccC
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKH--RLIRQSKSR-LIGPN 146 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~--~~ar~~gi~-iiGPN 146 (306)
+..+.+.+.+|+++|.+ |+|==+ ..+.++.+++.+ +.+++.|+. .+|-+
T Consensus 85 ~~~H~~~~~~al~aGkh-Vl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~ 137 (390)
T 4h3v_A 85 GDSHAEIAIAALEAGKH-VLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFT 137 (390)
T ss_dssp GGGHHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECG
T ss_pred hHHHHHHHHHHHHcCCC-ceeecCcccchhHHHHHHHHHHHHHhcCCceEEEee
Confidence 99999999999999976 555111 223444444421 225667763 34444
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.8e-07 Score=86.32 Aligned_cols=114 Identities=11% Similarity=-0.069 Sum_probs=80.1
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc-e---ec-C----------------------eeccCC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK-T---HL-D----------------------LPVFNT 78 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~-~---i~-G----------------------ip~y~s 78 (306)
..++.||+|||+ |++|+...+.+.+. ++++++..+++.... + .. | .++|.+
T Consensus 20 ~~k~IRVGIIGa-G~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D 98 (446)
T 3upl_A 20 TGKPIRIGLIGA-GEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDD 98 (446)
T ss_dssp TTCCEEEEEECC-SHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESC
T ss_pred cCCceEEEEECC-hHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECC
Confidence 456789999999 99999888877765 888888877654111 0 01 3 568999
Q ss_pred HHhhhhcCCCcEEEEecCc-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 79 VKEARDATGAEATVIYVPP-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
++++.+..++|++++++|. +.+.+.+.+|+++|.+. ++.......++..++ .++|+++|+.+.
T Consensus 99 ~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHV-v~~nk~l~~~eg~eL-~~~A~e~Gvvl~ 162 (446)
T 3upl_A 99 NDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHL-VMMNVEADVTIGPYL-KAQADKQGVIYS 162 (446)
T ss_dssp HHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEE-EECCHHHHHHHHHHH-HHHHHHHTCCEE
T ss_pred HHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcE-EecCcccCHHHHHHH-HHHHHHhCCeee
Confidence 9999876579999999975 57799999999999885 433322211222333 356778776543
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.9e-06 Score=68.04 Aligned_cols=87 Identities=13% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC--CCceecCeeccCCHHhhh---hcCCCcEEEEecCchh--
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK--GGKTHLDLPVFNTVKEAR---DATGAEATVIYVPPPG-- 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~--~g~~i~Gip~y~sl~el~---~~~~iDlavi~vp~~~-- 99 (306)
++.++++|+|+ |..|+...+.+.+. ||++++.++++. .+..+.|+|++. ++++. +++.+|.+++++|...
T Consensus 2 ~~~~~vlIiGa-G~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g-~~~l~~~~~~~~id~viia~~~~~~~ 79 (141)
T 3nkl_A 2 NAKKKVLIYGA-GSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYR-PKYLERLIKKHCISTVLLAVPSASQV 79 (141)
T ss_dssp -CCEEEEEECC-SHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEEC-GGGHHHHHHHHTCCEEEECCTTSCHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEEC-HHHHHHHHHHCCCCEEEEeCCCCCHH
Confidence 45689999999 88898888888775 899998887653 345688999987 55554 3446999999998543
Q ss_pred -HHHHHHHHHHcCCCEEE
Q psy8894 100 -AAKAIHEALDAEMPLIV 116 (306)
Q Consensus 100 -~~~~~~e~~~~Gi~~vv 116 (306)
..++++.|.+.|++..+
T Consensus 80 ~~~~i~~~l~~~gv~v~~ 97 (141)
T 3nkl_A 80 QKKVIIESLAKLHVEVLT 97 (141)
T ss_dssp HHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 37888999999999554
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.09 E-value=8.7e-06 Score=75.32 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=75.4
Q ss_pred cEEEEEcCCCCCCh-HHHHHHHHc-CCeEEEeeCCCCCCc----eecCeec-cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGT-FHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPV-FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~-~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~-y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.+|+|||+ |++|+ ...+.+.+. +++++ ..+++.... +..|++. |.+..++.. .++|++++++|+..+.+.
T Consensus 3 ~~igiIG~-G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~-~~~D~V~i~tp~~~h~~~ 79 (323)
T 1xea_A 3 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQ-YGVDAVMIHAATDVHSTL 79 (323)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGG-GCCSEEEECSCGGGHHHH
T ss_pred cEEEEECC-CHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCCccccCHHHHhh-cCCCEEEEECCchhHHHH
Confidence 58999999 99998 477888775 78887 877764111 1246664 554434332 259999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.+|+++|.+. ++=-+ ..+.++.+++. +++++.|+.+.
T Consensus 80 ~~~al~~Gk~V-~~EKP~~~~~~~~~~l~-~~a~~~g~~~~ 118 (323)
T 1xea_A 80 AAFFLHLGIPT-FVDKPLAASAQECENLY-ELAEKHHQPLY 118 (323)
T ss_dssp HHHHHHTTCCE-EEESCSCSSHHHHHHHH-HHHHHTTCCEE
T ss_pred HHHHHHCCCeE-EEeCCCcCCHHHHHHHH-HHHHhcCCeEE
Confidence 99999999874 44222 33445555554 57888887544
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00024 Score=69.36 Aligned_cols=238 Identities=14% Similarity=0.182 Sum_probs=142.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc----hhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP----PGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~----~~~~~~~~e 106 (306)
-+|++|.-||.++......+.+.|.-.-..|.-.. + .++..-+-|+-+.++.+.++++++.-. ..-.++++.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~--~--~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~~f~~~a~~ 225 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGN--M--ADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKR 225 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTT--C--CSSCHHHHHHHHTTCSSCCEEEEEESCCSCHHHHHHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCC--c--CCCCHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHHHHH
Confidence 56999999988887777777776554333444432 2 132222223444444457788877443 455566666
Q ss_pred HHHcCCCEEEEecCCCChhHH-------------HHHHHHHHHhcCCeEE-ccCCCceecCccccccCCCCCCCCCCCEE
Q psy8894 107 ALDAEMPLIVCITEGIPQLDM-------------VKVKHRLIRQSKSRLI-GPNCPGIIAPEQCKIGIMPGHIHQRGCVG 172 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~~-------------~~~~~~~ar~~gi~ii-GPNc~Gi~~~~~~~~~~~~~~~~~~G~va 172 (306)
+ ..+.+. +.+-.|-++... .+....+-|+.|+..+ -|. -+... .. .+....++-++|+
T Consensus 226 ~-~~~KPV-v~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v~~~~--El~~~---~~-~l~~~~~~g~rva 297 (457)
T 2csu_A 226 V-TKKKPI-IALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTID--EMLSM---AR-AFSQPLPRGNKVA 297 (457)
T ss_dssp H-HHHSCE-EEEECC------------------CHHHHHHHHHHTTCEEESSHH--HHHHH---HT-TTTSCCCSSSEEE
T ss_pred h-cCCCCE-EEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEECCHH--HHHHH---HH-HhcCCCCCCCcEE
Confidence 6 355564 445666654421 2223345577886322 221 11110 01 1111223456899
Q ss_pred EEecChhhHHHHHHHHHhCCCceE---------------------EEEecCCCCCCC-CCHHHHHHHhhcCCCccEEEEE
Q psy8894 173 VVSRSGTLTYEAVHQTTQVGLGQT---------------------LCVGIGGDPFNG-TNFIDCLEVFLKDPETKGIILI 230 (306)
Q Consensus 173 ~vSqSG~~~~~~~~~~~~~g~g~s---------------------~~vs~Gn~~~~d-v~~~d~l~~l~~D~~t~~I~ly 230 (306)
+++-||+++...++.+...|+-+. ..+-+|.+ ++ -.+.+.++-+.+||++.+|++.
T Consensus 298 iitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~--a~~~~~~~al~~~l~dp~vd~vlv~ 375 (457)
T 2csu_A 298 IMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIAS--ARGEDYYRTAKLLLQDPNVDMLIAI 375 (457)
T ss_dssp EEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTT--CCHHHHHHHHHHHHHSTTCSEEEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCC--CCHHHHHHHHHHHhcCCCCCEEEEE
Confidence 999999999999999999888642 34555544 22 2356788899999999999987
Q ss_pred Eee--C-----C------------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhH
Q psy8894 231 GEI--G-----G------------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQ 291 (306)
Q Consensus 231 ~E~--~-----~------------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~e 291 (306)
+-. . . ...+|||++...+.+. . ....+.|+++|+...+++++
T Consensus 376 ~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~------------------~-~~~~~~L~~~Gip~~~spe~ 436 (457)
T 2csu_A 376 CVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV------------------S-EKAKELLEKNGIPTYERPED 436 (457)
T ss_dssp EECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT------------------T-HHHHHHHHTTTCCEESSHHH
T ss_pred ccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcc------------------h-HHHHHHHHhCCCCccCCHHH
Confidence 731 1 1 1267999996544321 1 22357899999999999999
Q ss_pred HHHHHHHHHH
Q psy8894 292 MGNELLKEMK 301 (306)
Q Consensus 292 l~~~~~~~~~ 301 (306)
-..++.++..
T Consensus 437 Av~al~~l~~ 446 (457)
T 2csu_A 437 VASAAYALVE 446 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.3e-05 Score=73.42 Aligned_cols=157 Identities=16% Similarity=0.069 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHH---------cCCeEEEeeCCCCCCcee-------------cCeeccC--CHHhhhhcC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE---------YGTKVVGGVSPGKGGKTH-------------LDLPVFN--TVKEARDAT 86 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~---------~g~~vv~~VnP~~~g~~i-------------~Gip~y~--sl~el~~~~ 86 (306)
.+|+|+|+ |++|+...+.+.+ .++++++..+++. ... ...++|. +++++.+..
T Consensus 3 irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~--~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~ 79 (327)
T 3do5_A 3 IKIAIVGF-GTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKS--SISGDFSLVEALRMKRETGMLRDDAKAIEVVRSA 79 (327)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSC--EEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHS
T ss_pred EEEEEEec-cHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCCh--HhccccCHHHHHhhhccCccccCCCCHHHHhcCC
Confidence 58999998 9999988776655 3677888888763 111 1234676 899998766
Q ss_pred CCcEEEEecCchhH----HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCC
Q psy8894 87 GAEATVIYVPPPGA----AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMP 162 (306)
Q Consensus 87 ~iDlavi~vp~~~~----~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~ 162 (306)
++|++++++|+..+ .+.+.+|+++|++. ++-..+.-.....++ .++|+++|..+.-..+.|-..|.-...-
T Consensus 80 ~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhV-v~~NKkpla~~~~eL-~~~A~~~g~~~~~ea~v~~g~Pii~~l~--- 154 (327)
T 3do5_A 80 DYDVLIEASVTRVDGGEGVNYIREALKRGKHV-VTSNKGPLVAEFHGL-MSLAERNGVRLMYEATVGGAMPVVKLAK--- 154 (327)
T ss_dssp CCSEEEECCCCC----CHHHHHHHHHTTTCEE-EECCSHHHHHHHHHH-HHHHHHTTCCEECGGGSSTTSCCHHHHH---
T ss_pred CCCEEEECCCCcccchhHHHHHHHHHHCCCeE-EecCchhhHHHHHHH-HHHHHhhCCcEEEEEEeeecCHHHHHHH---
Confidence 79999999998875 89999999999984 432212211223344 4589999987764433333333211100
Q ss_pred CCCCCCCCEEEEe--cChhhHHHHHHHHHhCCCceEE
Q psy8894 163 GHIHQRGCVGVVS--RSGTLTYEAVHQTTQVGLGQTL 197 (306)
Q Consensus 163 ~~~~~~G~va~vS--qSG~~~~~~~~~~~~~g~g~s~ 197 (306)
.....+.|.=|. .||+... ++......|..|+.
T Consensus 155 -~~l~~~~I~~I~GIlnGT~ny-ilt~m~~~g~~f~~ 189 (327)
T 3do5_A 155 -RYLALCEIESVKGIFNGTCNY-ILSRMEEERLPYEH 189 (327)
T ss_dssp -TTTTTSCEEEEEEECCHHHHH-HHHHHHHHCCCHHH
T ss_pred -HHhhCCCccEEEEEECCCcCc-chhhcCcCCcCHHH
Confidence 112345565554 3777554 44444344555554
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.93 E-value=6.1e-06 Score=80.45 Aligned_cols=113 Identities=12% Similarity=0.035 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH----------cCCeEEEeeCCCCCCc-e-ecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE----------YGTKVVGGVSPGKGGK-T-HLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~----------~g~~vv~~VnP~~~g~-~-i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
.++.+|+|+|+ |+.|+..++.+.+ .++++++..+++.... . ..+.++|.+++++.++.++|++++++
T Consensus 8 Mk~irIgIIG~-G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~t 86 (444)
T 3mtj_A 8 MKPIHVGLLGL-GTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELI 86 (444)
T ss_dssp CSCEEEEEECC-HHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECC
T ss_pred hCcccEEEECC-CHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcC
Confidence 35789999998 9999877655432 3667888888764111 1 23567899999998766799999999
Q ss_pred Cc-hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 96 PP-PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 96 p~-~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
|+ +.+.+.+.+|+++|++ |++-.+....++..++ .++|+++|+.+.
T Consensus 87 p~~~~h~~~~~~AL~aGKh-Vvtenkal~a~~~~eL-~~~A~~~gv~l~ 133 (444)
T 3mtj_A 87 GGLEPARELVMQAIANGKH-VVTANKHLVAKYGNEI-FAAAQAKGVMVT 133 (444)
T ss_dssp CSSTTHHHHHHHHHHTTCE-EEECCHHHHHHHHHHH-HHHHHHHTCCEE
T ss_pred CCchHHHHHHHHHHHcCCE-EEECCcccCHHHHHHH-HHHHHHhCCeEE
Confidence 96 8999999999999988 4432222112223344 358899998774
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.84 E-value=9.2e-05 Score=68.59 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~~ 105 (306)
.++|+|||+ |.+|+...+.|.+.|++++ ..|++... ++ -.|+..+.+++++.+. .|++++++|. ..+.+++.
T Consensus 31 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~e~~~~--aDvVi~~vp~~~~~~~v~~ 106 (320)
T 4dll_A 31 ARKITFLGT-GSMGLPMARRLCEAGYALQ-VWNRTPARAASLAALGATIHEQARAAARD--ADIVVSMLENGAVVQDVLF 106 (320)
T ss_dssp CSEEEEECC-TTTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCEEESSHHHHHTT--CSEEEECCSSHHHHHHHHT
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHCCCEeeCCHHHHHhc--CCEEEEECCCHHHHHHHHc
Confidence 468999999 9999999999999999965 66765310 11 2377888899998876 9999999996 45555554
Q ss_pred --HHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 106 --EALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 106 --e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+..+ ..-..+++-.+..+....+++. +..++.|+.++.
T Consensus 107 ~~~~~~~l~~~~~vi~~st~~~~~~~~~~-~~~~~~g~~~~~ 147 (320)
T 4dll_A 107 AQGVAAAMKPGSLFLDMASITPREARDHA-ARLGALGIAHLD 147 (320)
T ss_dssp TTCHHHHCCTTCEEEECSCCCHHHHHHHH-HHHHHTTCEEEE
T ss_pred chhHHhhCCCCCEEEecCCCCHHHHHHHH-HHHHHcCCEEEe
Confidence 3333 2223334333333333333333 345677887764
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=4.3e-05 Score=71.58 Aligned_cols=111 Identities=14% Similarity=0.037 Sum_probs=75.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--------CCeEEEeeCCCCCC-ce-e-----------cCee-ccC---CHHhhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--------GTKVVGGVSPGKGG-KT-H-----------LDLP-VFN---TVKEAR 83 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--------g~~vv~~VnP~~~g-~~-i-----------~Gip-~y~---sl~el~ 83 (306)
++.+|+|+|+ |.+|+...+.+.+. ++++++..+++... .+ + .+++ +|. +++++.
T Consensus 5 ~~irvgIiG~-G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll 83 (331)
T 3c8m_A 5 KTINLSIFGL-GNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEAL 83 (331)
T ss_dssp EEEEEEEECC-SHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHH
T ss_pred cEEeEEEEec-CHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHh
Confidence 4679999999 99999887776553 36788887766410 01 1 1332 555 888887
Q ss_pred hcCCCcEEEEecCch----hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 84 DATGAEATVIYVPPP----GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 84 ~~~~iDlavi~vp~~----~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
..++|++++++|+. .+.+.+.+|+++|++. ++-..+.-.++..++ .++|+++|+++.
T Consensus 84 -~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhV-vtanK~pla~~~~eL-~~~A~~~gv~~~ 144 (331)
T 3c8m_A 84 -ARDFDIVVDATPASADGKKELAFYKETFENGKDV-VTANKSGLANFWPEI-MEYARSNNRRIR 144 (331)
T ss_dssp -HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEE-EECCCHHHHHHHHHH-HHHHHHHTCCEE
T ss_pred -CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeE-EecCchhhHHHHHHH-HHHHHHcCCEEE
Confidence 55799999999995 8889999999999884 431222211223344 357899997664
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.2e-05 Score=71.28 Aligned_cols=112 Identities=11% Similarity=0.082 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeeccCCHHhhhhc-CCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVFNTVKEARDA-TGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y~sl~el~~~-~~iDlavi~vp~~~~~~~~ 104 (306)
+.++|+|||. |+||+...++|.+.|++++ ..|++... + .-.|+..+.+++++... ..+|++++++|+..+.+++
T Consensus 21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl 98 (358)
T 4e21_A 21 QSMQIGMIGL-GRMGADMVRRLRKGGHECV-VYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML 98 (358)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred cCCEEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence 4578999998 9999999999999999875 66765310 0 12377788899998765 1359999999999888888
Q ss_pred HHHHHc-CCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 HEALDA-EMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+++... .-..+++ .++.. ..+..++.+ .+++.|+++++
T Consensus 99 ~~l~~~l~~g~iiId~st~~-~~~~~~~~~-~l~~~g~~~vd 138 (358)
T 4e21_A 99 QRMTPLLAANDIVIDGGNSH-YQDDIRRAD-QMRAQGITYVD 138 (358)
T ss_dssp HHHGGGCCTTCEEEECSSCC-HHHHHHHHH-HHHTTTCEEEE
T ss_pred HHHHhhCCCCCEEEeCCCCC-hHHHHHHHH-HHHHCCCEEEe
Confidence 777653 2233343 34443 333333333 45677887764
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.76 E-value=6.8e-05 Score=68.10 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecC-chhHHHHH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVP-PPGAAKAI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp-~~~~~~~~-- 104 (306)
++|+|+|+ |++|+...+.+.+.|++++ ..|++....+ -.|+..+.+++++.+. .|++++++| +..+.+++
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--aDvvi~~vp~~~~~~~v~~~ 77 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVT-IWNRSPEKAEELAALGAERAATPCEVVES--CPVTFAMLADPAAAEEVCFG 77 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHhc--CCEEEEEcCCHHHHHHHHcC
Confidence 58999999 9999999999999999875 6676541111 2378888999998876 899999999 56777777
Q ss_pred -HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 -HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 -~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+++.+. .-..+++-+++......+++. +..++.|+.++.
T Consensus 78 ~~~l~~~l~~~~~vi~~st~~~~~~~~~~-~~~~~~g~~~~~ 118 (287)
T 3pef_A 78 KHGVLEGIGEGRGYVDMSTVDPATSQRIG-VAVVAKGGRFLE 118 (287)
T ss_dssp TTCHHHHCCTTCEEEECSCCCHHHHHHHH-HHHHHTTCEEEE
T ss_pred cchHhhcCCCCCEEEeCCCCCHHHHHHHH-HHHHHhCCEEEE
Confidence 555442 222344434454444444443 345667877664
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.74 E-value=9.3e-05 Score=67.41 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=71.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC---eEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT---KVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~---~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++|+|||+ |+||+...+.+.+.|+ +++ ..|++.... +..|+.++.+..++.+. .|++++++|++...+
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~-v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~--aDvVilav~p~~~~~ 78 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANGYDPNRIC-VTNRSLDKLDFFKEKCGVHTTQDNRQGALN--ADVVVLAVKPHQIKM 78 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEE-EECSSSHHHHHHHHTTCCEEESCHHHHHSS--CSEEEECSCGGGHHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEE-EEeCCHHHHHHHHHHcCCEEeCChHHHHhc--CCeEEEEeCHHHHHH
Confidence 368999999 9999999999999988 554 677764111 12388888888887765 999999999999999
Q ss_pred HHHHHHHc--CCC-EEEEecCCCChhHHH
Q psy8894 103 AIHEALDA--EMP-LIVCITEGIPQLDMV 128 (306)
Q Consensus 103 ~~~e~~~~--Gi~-~vvi~t~Gf~e~~~~ 128 (306)
+++++... .-+ .++..+.|++-+.++
T Consensus 79 vl~~l~~~~l~~~~iiiS~~agi~~~~l~ 107 (280)
T 3tri_A 79 VCEELKDILSETKILVISLAVGVTTPLIE 107 (280)
T ss_dssp HHHHHHHHHHTTTCEEEECCTTCCHHHHH
T ss_pred HHHHHHhhccCCCeEEEEecCCCCHHHHH
Confidence 99888653 334 555567898755433
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.5e-05 Score=68.29 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCC--CCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGK--GGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~--~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+.++|+|||+ |.||....+.|.+.|+ +++ ..|++. ... ...|+..+.+++++.+. .|++++++|+....+
T Consensus 23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~--aDvVi~~vp~~~~~~ 98 (312)
T 3qsg_A 23 NAMKLGFIGF-GEAASAIASGLRQAGAIDMA-AYDAASAESWRPRAEELGVSCKASVAEVAGE--CDVIFSLVTAQAALE 98 (312)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHHSCCEEE-EECSSCHHHHHHHHHHTTCEECSCHHHHHHH--CSEEEECSCTTTHHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCCeEE-EEcCCCCHHHHHHHHHCCCEEeCCHHHHHhc--CCEEEEecCchhHHH
Confidence 3478999999 9999999999999999 654 677641 001 12478888899998776 899999999999999
Q ss_pred HHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhc--CCeEEcc
Q psy8894 103 AIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQS--KSRLIGP 145 (306)
Q Consensus 103 ~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~--gi~iiGP 145 (306)
++++.... .-..+++-.+........++.+ ..++. |++++.+
T Consensus 99 ~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~-~~~~~~~g~~~vd~ 143 (312)
T 3qsg_A 99 VAQQAGPHLCEGALYADFTSCSPAVKRAIGD-VISRHRPSAQYAAV 143 (312)
T ss_dssp HHHHHGGGCCTTCEEEECCCCCHHHHHHHHH-HHHHHCTTCEEEEE
T ss_pred HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHH-HHHhhcCCCeEEec
Confidence 88877663 2233444344444433333333 33455 7766543
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.7e-05 Score=66.08 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=68.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|+|+|+ |++|+...+.|.+.| +++. .+|++. +. .|+.++.+.+++.+. .|++++++|+..+.+++++
T Consensus 5 m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~-~~~~~~--~~-~g~~~~~~~~~~~~~--~D~vi~~v~~~~~~~v~~~ 77 (262)
T 2rcy_A 5 IKLGFMGL-GQMGSALAHGIANANIIKKENLF-YYGPSK--KN-TTLNYMSSNEELARH--CDIIVCAVKPDIAGSVLNN 77 (262)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHHTSSCGGGEE-EECSSC--CS-SSSEECSCHHHHHHH--CSEEEECSCTTTHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCCCCCeEE-EEeCCc--cc-CceEEeCCHHHHHhc--CCEEEEEeCHHHHHHHHHH
Confidence 57999999 999999999998888 4553 667664 22 678888888887765 9999999999999999987
Q ss_pred HHHc-CCCEEEEecCCCChhH
Q psy8894 107 ALDA-EMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~~-Gi~~vvi~t~Gf~e~~ 126 (306)
+... .-+.++..+.|++.+.
T Consensus 78 l~~~l~~~~vv~~~~gi~~~~ 98 (262)
T 2rcy_A 78 IKPYLSSKLLISICGGLNIGK 98 (262)
T ss_dssp SGGGCTTCEEEECCSSCCHHH
T ss_pred HHHhcCCCEEEEECCCCCHHH
Confidence 7543 2345666778887643
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0001 Score=69.49 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec-------C---eeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL-------D---LPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~-------G---ip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|++|..|+...+.|.++ .+++++..+....|..+. | +. +.+++++ . ++|++++++|..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~~-~--~vDvV~~a~g~~ 79 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEKL-E--PADILVLALPHG 79 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGGC-C--CCSEEEECCCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhHh-c--CCCEEEEcCCcH
Confidence 468999999999999999988876 567876666543333222 1 11 2234333 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+.++.+.++|++ ++..+.-|.
T Consensus 80 ~s~~~a~~~~~aG~~-VId~Sa~~r 103 (345)
T 2ozp_A 80 VFAREFDRYSALAPV-LVDLSADFR 103 (345)
T ss_dssp HHHHTHHHHHTTCSE-EEECSSTTS
T ss_pred HHHHHHHHHHHCCCE-EEEcCcccc
Confidence 999999999999998 444566564
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=66.11 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=73.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~~ 105 (306)
.++|+|||. |.+|+...+.|.+.|++++ ..|++.... . -.|+..+.+++++.+ .|++++++|. ..+.++++
T Consensus 15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~---aDvvi~~vp~~~~~~~v~~ 89 (296)
T 3qha_A 15 QLKLGYIGL-GNMGAPMATRMTEWPGGVT-VYDIRIEAMTPLAEAGATLADSVADVAA---ADLIHITVLDDAQVREVVG 89 (296)
T ss_dssp CCCEEEECC-STTHHHHHHHHTTSTTCEE-EECSSTTTSHHHHHTTCEECSSHHHHTT---SSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCEEcCCHHHHHh---CCEEEEECCChHHHHHHHH
Confidence 468999998 9999999999999999965 556553111 1 247788889999875 8999999995 56677777
Q ss_pred HHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 106 EALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 106 e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
++... .-..+++-.+.......+++. +..++.|+.++.
T Consensus 90 ~l~~~l~~g~ivv~~st~~~~~~~~~~-~~~~~~g~~~~~ 128 (296)
T 3qha_A 90 ELAGHAKPGTVIAIHSTISDTTAVELA-RDLKARDIHIVD 128 (296)
T ss_dssp HHHTTCCTTCEEEECSCCCHHHHHHHH-HHHGGGTCEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCHHHHHHHH-HHHHHcCCEEEe
Confidence 77653 223344333443333333333 345667877664
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.6e-05 Score=67.66 Aligned_cols=93 Identities=16% Similarity=0.191 Sum_probs=69.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|+|+|+ |++|+...+.+.+.|++++..++++.... +..|+.++.+++++.+. .|++++++|+..+.+++++
T Consensus 11 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~Dvvi~av~~~~~~~v~~~ 87 (266)
T 3d1l_A 11 TPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPY--AKLYIVSLKDSAFAELLQG 87 (266)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSC--CSEEEECCCHHHHHHHHHH
T ss_pred CeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcC--CCEEEEecCHHHHHHHHHH
Confidence 57999999 99999999999888998666777753100 11277888888887665 9999999999998888887
Q ss_pred HHHc--CCCEEEEecCCCChhH
Q psy8894 107 ALDA--EMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~~--Gi~~vvi~t~Gf~e~~ 126 (306)
+... .=+.++..++|++.+.
T Consensus 88 l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 88 IVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp HHTTCCTTCEEEECCTTSCGGG
T ss_pred HHhhcCCCcEEEECCCCCchHH
Confidence 7652 1234555677887544
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.66 E-value=4e-05 Score=75.27 Aligned_cols=118 Identities=11% Similarity=0.137 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc------CCeEEEeeCCCCCCc---eecCeecc----CCHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY------GTKVVGGVSPGKGGK---THLDLPVF----NTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~------g~~vv~~VnP~~~g~---~i~Gip~y----~sl~el~~~~~iDlavi~vp~ 97 (306)
++|+|||. |+||....++|++. |++++...+...... ...|+... .+++|+... .|++++++|+
T Consensus 55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~--ADVVILaVP~ 131 (525)
T 3fr7_A 55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSG--SDLVLLLISD 131 (525)
T ss_dssp SEEEEECC-TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHH--CSEEEECSCH
T ss_pred CEEEEEeE-hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhc--CCEEEECCCh
Confidence 78999998 99999999999998 998664554432111 23577652 578888876 8999999999
Q ss_pred hhHHHHHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 98 PGAAKAIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 98 ~~~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
....+++++.... .-..++.++.||+-...++.....-+...+-.+-||+.|-.
T Consensus 132 ~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~ 186 (525)
T 3fr7_A 132 AAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPS 186 (525)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchh
Confidence 9888888876542 34456789999864332210001112223455579998876
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.7e-05 Score=67.88 Aligned_cols=91 Identities=15% Similarity=0.127 Sum_probs=66.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
.++|+|+|+ |++|+...+.+.+.|+++ ...|++... +. ..|+..+.+++++... +|++++++|+..+.++++
T Consensus 3 ~m~i~iiG~-G~mG~~~a~~l~~~g~~v-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~D~Vi~~v~~~~~~~v~~ 78 (259)
T 2ahr_A 3 AMKIGIIGV-GKMASAIIKGLKQTPHEL-IISGSSLERSKEIAEQLALPYAMSHQDLIDQ--VDLVILGIKPQLFETVLK 78 (259)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTSSCEE-EEECSSHHHHHHHHHHHTCCBCSSHHHHHHT--CSEEEECSCGGGHHHHHT
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCCeE-EEECCCHHHHHHHHHHcCCEeeCCHHHHHhc--CCEEEEEeCcHhHHHHHH
Confidence 468999998 999999999998888765 467765310 11 2378888899888765 999999999998888887
Q ss_pred HHHHcCCCEEEEecCCCChhH
Q psy8894 106 EALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
++. .|. .++..+.|.+.+.
T Consensus 79 ~l~-~~~-~vv~~~~~~~~~~ 97 (259)
T 2ahr_A 79 PLH-FKQ-PIISMAAGISLQR 97 (259)
T ss_dssp TSC-CCS-CEEECCTTCCHHH
T ss_pred Hhc-cCC-EEEEeCCCCCHHH
Confidence 653 443 3444556787544
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.61 E-value=9.2e-05 Score=69.27 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-------CCeEEEeeCCCCCC--ce-----------ecC-ee--ccCCHHhhhhc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-------GTKVVGGVSPGKGG--KT-----------HLD-LP--VFNTVKEARDA 85 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-------g~~vv~~VnP~~~g--~~-----------i~G-ip--~y~sl~el~~~ 85 (306)
++.+|+|+|+ |++|+...+.+.+. ++++++..|.+... .. -.| ++ .| +..++...
T Consensus 3 k~irVgIiG~-G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~ 80 (325)
T 3ing_A 3 KEIRIILMGT-GNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG 80 (325)
T ss_dssp CEEEEEEECC-SHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred ceEEEEEEcC-cHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence 3578999998 99999988877653 56688887765310 00 012 22 23 56666655
Q ss_pred CCCcEEEEecCchh----HHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCC
Q psy8894 86 TGAEATVIYVPPPG----AAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIM 161 (306)
Q Consensus 86 ~~iDlavi~vp~~~----~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~ 161 (306)
.++|++++++|+.. +.+.+.+|+++|++.+. -..+.-.++..++ .++|+++|..+.=.-+.|--.|.....-
T Consensus 81 ~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVt-aNK~~la~~~~eL-~~lA~~~g~~~~~Ea~vg~giPii~~l~-- 156 (325)
T 3ing_A 81 EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVT-ANKSGLANKWHDI-MDSANQNSKYIRYEATVAGGVPLFSVLD-- 156 (325)
T ss_dssp SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEE-CCCHHHHHHHHHH-HHHHHHHTCCEECGGGSSTTSCCHHHHH--
T ss_pred CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEE-cCchhHHHHHHHH-HHHHHHcCCeEEEEeeecccCHHHHHHH--
Confidence 57999999999753 36899999999998533 2333222233344 4688999987754443333333211000
Q ss_pred CCCCCCCCCEEEEe--cChhhHHHHHHHHHhCCCceEEEE
Q psy8894 162 PGHIHQRGCVGVVS--RSGTLTYEAVHQTTQVGLGQTLCV 199 (306)
Q Consensus 162 ~~~~~~~G~va~vS--qSG~~~~~~~~~~~~~g~g~s~~v 199 (306)
.....+.|.-|. .||+... +++.. +.|..|+.++
T Consensus 157 --~~l~g~~I~~i~Gi~nGT~ny-il~~m-~~g~~f~~~l 192 (325)
T 3ing_A 157 --YSILPSKVKRFRGIVSSTINY-VIRNM-ANGRSLRDVV 192 (325)
T ss_dssp --HTCTTCCEEEEEEECCHHHHH-HHHHH-HTTCCHHHHH
T ss_pred --HHhhCCCeeEEEEEEEeeeeE-Eeecc-cCCCCHHHHH
Confidence 012335565554 6777644 44433 5566555443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=66.39 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~ 105 (306)
.++|+|||. |+||+...++|.+.|++++ ..|++.... .-.|...+.+++++.+. .|++++++|... +.+++.
T Consensus 9 ~~~IgiIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~e~~~~--aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 9 EFDVSVIGL-GAMGTIMAQVLLKQGKRVA-IWNRSPGKAAALVAAGAHLCESVKAALSA--SPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp SCSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTCEECSSHHHHHHH--SSEEEECCSSHHHHHHHHT
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHhc--CCEEEEEeCCHHHHHHHhc
Confidence 468999999 9999999999999999865 567653100 12377888899998876 999999999765 566654
Q ss_pred --HHHHcCC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 106 --EALDAEM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 106 --e~~~~Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.+....- +.++..++ .+....+++. +..++.|++++.
T Consensus 85 ~~~l~~~~~g~ivid~st-~~~~~~~~l~-~~~~~~g~~~vd 124 (306)
T 3l6d_A 85 MPGVARALAHRTIVDYTT-NAQDEGLALQ-GLVNQAGGHYVK 124 (306)
T ss_dssp STTHHHHTTTCEEEECCC-CCTTHHHHHH-HHHHHTTCEEEE
T ss_pred ccchhhccCCCEEEECCC-CCHHHHHHHH-HHHHHcCCeEEe
Confidence 3322222 33444444 3333334443 345677887664
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00015 Score=65.81 Aligned_cols=109 Identities=12% Similarity=0.073 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~-- 104 (306)
++|+|+|+ |++|+...+.|.+.|+++. ..|++.... . -.|+....+++++.+. .|++++++|.. .+.+++
T Consensus 2 ~~I~iiG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--advvi~~v~~~~~~~~v~~~ 77 (287)
T 3pdu_A 2 TTYGFLGL-GIMGGPMAANLVRAGFDVT-VWNRNPAKCAPLVALGARQASSPAEVCAA--CDITIAMLADPAAAREVCFG 77 (287)
T ss_dssp CCEEEECC-STTHHHHHHHHHHHTCCEE-EECSSGGGGHHHHHHTCEECSCHHHHHHH--CSEEEECCSSHHHHHHHHHS
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHCCCeecCCHHHHHHc--CCEEEEEcCCHHHHHHHHcC
Confidence 47999998 9999999999999999865 566654111 1 2377888899998876 89999999986 566666
Q ss_pred -HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 -HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 -~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
++..+. .-..+++-++.......+++. +..++.|++++.
T Consensus 78 ~~~l~~~l~~g~~vv~~st~~~~~~~~~~-~~~~~~g~~~~~ 118 (287)
T 3pdu_A 78 ANGVLEGIGGGRGYIDMSTVDDETSTAIG-AAVTARGGRFLE 118 (287)
T ss_dssp TTCGGGTCCTTCEEEECSCCCHHHHHHHH-HHHHHTTCEEEE
T ss_pred chhhhhcccCCCEEEECCCCCHHHHHHHH-HHHHHcCCEEEE
Confidence 444432 122333333333333333333 345667877664
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00064 Score=62.48 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CCc-eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH-H
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GGK-THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI-H 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~-~ 105 (306)
+||++||. |+||....++|.+.||+++ +.|++. ... .-.|.....|+.|+.+. .|++++++|...+.. ++ .
T Consensus 6 ~kIgfIGL-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~G~~~~~s~~e~~~~--~dvvi~~l~~~~~~~~v~~~ 81 (297)
T 4gbj_A 6 EKIAFLGL-GNLGTPIAEILLEAGYELV-VWNRTASKAEPLTKLGATVVENAIDAITP--GGIVFSVLADDAAVEELFSM 81 (297)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EC-------CTTTTTTCEECSSGGGGCCT--TCEEEECCSSHHHHHHHSCH
T ss_pred CcEEEEec-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCeEeCCHHHHHhc--CCceeeeccchhhHHHHHHH
Confidence 47999999 9999999999999999975 445432 111 12478888999999876 999999999876544 32 2
Q ss_pred HHHH-cCCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEE-ccCC
Q psy8894 106 EALD-AEMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLI-GPNC 147 (306)
Q Consensus 106 e~~~-~Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc 147 (306)
+... ..-..+++ .++. +.+..+++. +.++++|++++ .|-+
T Consensus 82 ~~~~~~~~~~iiid~sT~-~p~~~~~~~-~~~~~~g~~~ldapVs 124 (297)
T 4gbj_A 82 ELVEKLGKDGVHVSMSTI-SPETSRQLA-QVHEWYGAHYVGAPIF 124 (297)
T ss_dssp HHHHHHCTTCEEEECSCC-CHHHHHHHH-HHHHHTTCEEEECCEE
T ss_pred HHHhhcCCCeEEEECCCC-ChHHHHHHH-HHHHhcCCceecCCcC
Confidence 2222 23333444 4444 344444443 35678888777 4444
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00017 Score=66.42 Aligned_cols=110 Identities=15% Similarity=0.101 Sum_probs=73.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI- 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~- 104 (306)
.++|+|||+ |++|+...+.|.+.|++++ ..|++.... . -.|+..+.+++++.+. .|++++++|.. .+.+++
T Consensus 21 m~~I~iIG~-G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~~~~~~~~~--aDvvi~~vp~~~~~~~v~~ 96 (310)
T 3doj_A 21 MMEVGFLGL-GIMGKAMSMNLLKNGFKVT-VWNRTLSKCDELVEHGASVCESPAEVIKK--CKYTIAMLSDPCAALSVVF 96 (310)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSGGGGHHHHHTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeEcCCHHHHHHh--CCEEEEEcCCHHHHHHHHh
Confidence 468999999 9999999999999999865 667654111 1 2477888899998876 89999999975 555555
Q ss_pred --HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 --HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 --~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+++... .-..+++-++..+....+++. +..++.|+.++.
T Consensus 97 ~~~~l~~~l~~g~~vv~~st~~~~~~~~~~-~~~~~~g~~~v~ 138 (310)
T 3doj_A 97 DKGGVLEQICEGKGYIDMSTVDAETSLKIN-EAITGKGGRFVE 138 (310)
T ss_dssp STTCGGGGCCTTCEEEECSCCCHHHHHHHH-HHHHHTTCEEEE
T ss_pred CchhhhhccCCCCEEEECCCCCHHHHHHHH-HHHHHcCCEEEe
Confidence 443332 222334434444444333333 345677887765
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=64.01 Aligned_cols=108 Identities=10% Similarity=0.096 Sum_probs=68.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~ 105 (306)
+++|+|+|+ |++|+...+.|.+.|++++ .+| +... +. -.|+..+.+++++.+. .|++++++|... +.+++.
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~--~D~vi~~vp~~~~~~~v~~ 77 (295)
T 1yb4_A 3 AMKLGFIGL-GIMGSPMAINLARAGHQLH-VTT-IGPVADELLSLGAVNVETARQVTEF--ADIIFIMVPDTPQVEDVLF 77 (295)
T ss_dssp -CEEEECCC-STTHHHHHHHHHHTTCEEE-ECC-SSCCCHHHHTTTCBCCSSHHHHHHT--CSEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhCCCEEE-EEc-CHHHHHHHHHcCCcccCCHHHHHhc--CCEEEEECCCHHHHHHHHh
Confidence 368999998 9999999999998999864 555 4311 11 1377788899888765 999999998876 455554
Q ss_pred ---HHHH-cCCCEEE-EecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 106 ---EALD-AEMPLIV-CITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 106 ---e~~~-~Gi~~vv-i~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+... ..-..++ ..++|. ....+++. +..++.+++++.
T Consensus 78 ~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~-~~~~~~g~~~~~ 119 (295)
T 1yb4_A 78 GEHGCAKTSLQGKTIVDMSSIS-PIETKRFA-QRVNEMGADYLD 119 (295)
T ss_dssp STTSSTTSCCTTEEEEECSCCC-HHHHHHHH-HHHHTTTEEEEE
T ss_pred CchhHhhcCCCCCEEEECCCCC-HHHHHHHH-HHHHHcCCeEEE
Confidence 2322 1223333 345553 22233333 344556777663
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.51 E-value=7.8e-05 Score=65.30 Aligned_cols=95 Identities=15% Similarity=0.120 Sum_probs=64.8
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e---ecCeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T---HLDLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
.+.+.++|+|+|+ |++|+...+.+.+.|++++...+++.... . ..|+..+.+..+.... .|++++++|+..+.
T Consensus 19 ~~m~mmkI~IIG~-G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~--aDvVilavp~~~~~ 95 (220)
T 4huj_A 19 YFQSMTTYAIIGA-GAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQ--ADVVILAVPYDSIA 95 (220)
T ss_dssp TGGGSCCEEEEEC-HHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTT--SSEEEEESCGGGHH
T ss_pred hhhcCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhc--CCEEEEeCChHHHH
Confidence 4444578999997 99999999999999999764466653111 1 1255554444444443 89999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCC
Q psy8894 102 KAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
++++++....-+.++-.+.|+.
T Consensus 96 ~v~~~l~~~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 96 DIVTQVSDWGGQIVVDASNAID 117 (220)
T ss_dssp HHHTTCSCCTTCEEEECCCCBC
T ss_pred HHHHHhhccCCCEEEEcCCCCC
Confidence 9988764322234555666763
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00064 Score=61.64 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
++++|+|+|+ |++|+...+.+.+.|++++ .+|++... +. -.|+..+.+++++... .|++++++|... +.+++
T Consensus 3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~D~vi~~vp~~~~~~~v~ 78 (301)
T 3cky_A 3 KSIKIGFIGL-GAMGKPMAINLLKEGVTVY-AFDLMEANVAAVVAQGAQACENNQKVAAA--SDIIFTSLPNAGIVETVM 78 (301)
T ss_dssp -CCEEEEECC-CTTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHTTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHCCCeecCCHHHHHhC--CCEEEEECCCHHHHHHHH
Confidence 4578999998 9999999999998899865 66665310 11 1277788889888766 999999998654 55565
Q ss_pred H---HHHH-cCC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 H---EALD-AEM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~---e~~~-~Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
. +... ..- +.++..++|.++ ..+++. +..++.+++++
T Consensus 79 ~~~~~l~~~l~~~~~vv~~~~~~~~-~~~~l~-~~~~~~g~~~~ 120 (301)
T 3cky_A 79 NGPGGVLSACKAGTVIVDMSSVSPS-STLKMA-KVAAEKGIDYV 120 (301)
T ss_dssp HSTTCHHHHSCTTCEEEECCCCCHH-HHHHHH-HHHHHTTCEEE
T ss_pred cCcchHhhcCCCCCEEEECCCCCHH-HHHHHH-HHHHHcCCeEE
Confidence 3 3332 221 344556666632 222332 33455677776
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0039 Score=61.20 Aligned_cols=236 Identities=14% Similarity=0.128 Sum_probs=136.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCc--h-hHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPP--P-GAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~--~-~~~~~ 103 (306)
++-+|++|.-||.++......+.+.|.-.-..|.-... ..++.|+..-+-|+-+.++.+.++++++.-. + ...+.
T Consensus 111 ~~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~~~f 190 (480)
T 3dmy_A 111 PEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKI 190 (480)
T ss_dssp CEEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHHHHH
T ss_pred CCCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHHHHH
Confidence 47899999999998888877777764433333433220 0123444333334444444457888887631 2 12445
Q ss_pred HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccc--------cccCCC-----CCCCCCCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQC--------KIGIMP-----GHIHQRGC 170 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~--------~~~~~~-----~~~~~~G~ 170 (306)
++.+-+.+.+.| .+-.|-++.. .|+. |++..... ...... ...+.-.+
T Consensus 191 ~~~ar~~~KPVV-~~k~Grs~~g--------~r~~----------Gvirv~~~~el~~~a~~l~~~~~~~~~qp~~~G~r 251 (480)
T 3dmy_A 191 VNAMKATGKPTV-ALFLGYTPAV--------ARDE----------NVWFASSLDEAARLACLLSRVTARRNAIAPVSSGF 251 (480)
T ss_dssp HHHHHHHCSCEE-EEETTCCCSS--------SEET----------TEEEESSHHHHHHHHHHHHHHHHHHHHHCCCSCCE
T ss_pred HHHHHhCCCCEE-EEEeCCCCcc--------cccC----------CEEEECCHHHHHHHHHHHhcCccccccCCCCCCCe
Confidence 555545666654 4566665543 0111 12111100 000000 00123346
Q ss_pred EEEEecChhhHHHHHHHHHhCCCceE----------------EEEe-------cCCCCCCCC----CHHHHHHHhhcCCC
Q psy8894 171 VGVVSRSGTLTYEAVHQTTQVGLGQT----------------LCVG-------IGGDPFNGT----NFIDCLEVFLKDPE 223 (306)
Q Consensus 171 va~vSqSG~~~~~~~~~~~~~g~g~s----------------~~vs-------~Gn~~~~dv----~~~d~l~~l~~D~~ 223 (306)
|++||-||+++....+.+.+ |+++. ..+. .||- .|+ .+.+.++-+.+||+
T Consensus 252 vaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NP--vD~~d~~~~~~al~~~l~D~~ 328 (480)
T 3dmy_A 252 ICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRP--HPMIDPTLRNQLIADLGAKPQ 328 (480)
T ss_dssp EEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSC--CTTTCCHHHHHHHHHGGGCTT
T ss_pred EEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCC--cCCCCHHHHHHHHHHHhcCCC
Confidence 99999999999999998877 66653 3333 4454 343 26778889999999
Q ss_pred ccEEEE-EEeeCC-----------------CCC--CCc--EEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHc
Q psy8894 224 TKGIIL-IGEIGG-----------------GPN--AKP--VVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKA 281 (306)
Q Consensus 224 t~~I~l-y~E~~~-----------------~~~--~KP--Vvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~a 281 (306)
+-+|++ |+-+.+ ... +|| ++++-.|.... . .......+.|+++
T Consensus 329 vd~vlv~~v~~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~-~--------------~~~~~~~~~L~~a 393 (480)
T 3dmy_A 329 VRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERD-P--------------QCRSQQIATLEDA 393 (480)
T ss_dssp EEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTS-T--------------TCHHHHHHHHHHT
T ss_pred CCEEEEEeecCCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccc-h--------------hhHHHHHHHHHhC
Confidence 998877 231111 122 799 45555555311 0 1222235789999
Q ss_pred CCeEeCCHhHHHHHHHHHHH
Q psy8894 282 GVIVTRSPAQMGNELLKEMK 301 (306)
Q Consensus 282 Gvi~~~~~~el~~~~~~~~~ 301 (306)
|+..-+++++-..++..++.
T Consensus 394 GIp~f~spe~Av~a~~~l~~ 413 (480)
T 3dmy_A 394 GIAVVSSLPEATLLAAALIH 413 (480)
T ss_dssp TCEECSSHHHHHHHHHHHTS
T ss_pred CCcccCCHHHHHHHHHHHHh
Confidence 99999999998888876654
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=67.23 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-c-CCeEEEeeCCCCCC--ce---ecCeec-cCCHHhhhhc---CCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-Y-GTKVVGGVSPGKGG--KT---HLDLPV-FNTVKEARDA---TGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~-g~~vv~~VnP~~~g--~~---i~Gip~-y~sl~el~~~---~~iDlavi~vp~ 97 (306)
++.+|+|+|+ |..|+...+.+.+ . +.++++.++++... .+ ..|.+. +.+++++.+. .++|++++++|.
T Consensus 3 ~~irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~ 81 (312)
T 1nvm_B 3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSA 81 (312)
T ss_dssp SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCH
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCCh
Confidence 4679999996 9999998888855 4 77888777766321 11 346653 5667887543 359999999999
Q ss_pred hhHHHHHHHHHHc--CCCEEEEecC
Q psy8894 98 PGAAKAIHEALDA--EMPLIVCITE 120 (306)
Q Consensus 98 ~~~~~~~~e~~~~--Gi~~vvi~t~ 120 (306)
+.+.+.+.+++++ |.+ |++.++
T Consensus 82 ~~h~~~a~~al~a~~Gk~-Vi~ekp 105 (312)
T 1nvm_B 82 SAHVQNEALLRQAKPGIR-LIDLTP 105 (312)
T ss_dssp HHHHHHHHHHHHHCTTCE-EEECST
T ss_pred HHHHHHHHHHHHhCCCCE-EEEcCc
Confidence 9999999999999 988 455454
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0005 Score=63.69 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCCc---eecCe--eccCCHHh-hhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGGK---THLDL--PVFNTVKE-ARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g~---~i~Gi--p~y~sl~e-l~~~~~iDlavi~vp~~~~~~ 102 (306)
++|+|||+ |.+|....+.+.+.|+ +++ +.|++.... ...|+ ..+.++++ +... .|++++++|+....+
T Consensus 34 ~kI~IIG~-G~mG~slA~~l~~~G~~~~V~-~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~--aDvVilavp~~~~~~ 109 (314)
T 3ggo_A 34 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVDLGIIDEGTTSIAKVEDFS--PDFVMLSSPVRTFRE 109 (314)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHTTSCSEEESCTTGGGGGC--CSEEEECSCGGGHHH
T ss_pred CEEEEEee-CHHHHHHHHHHHhCCCCCEEE-EEECCHHHHHHHHHCCCcchhcCCHHHHhhcc--CCEEEEeCCHHHHHH
Confidence 68999998 9999999999999999 654 677764100 11344 45677887 6655 999999999999999
Q ss_pred HHHHHHHc-CCCEEEEecCCCC
Q psy8894 103 AIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
+++++... .-..+++-.++..
T Consensus 110 vl~~l~~~l~~~~iv~d~~Svk 131 (314)
T 3ggo_A 110 IAKKLSYILSEDATVTDQGSVK 131 (314)
T ss_dssp HHHHHHHHSCTTCEEEECCSCC
T ss_pred HHHHHhhccCCCcEEEECCCCc
Confidence 99888763 4444554334443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.44 E-value=8.6e-05 Score=68.99 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cC-----------eeccCCHHhhhhcCCCcEEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LD-----------LPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~G-----------ip~y~sl~el~~~~~iDlavi~ 94 (306)
-|.+|+|+|+ |.||......|.+.|+++. .+++...- +.+ .| +++..+.++ .+. .|+++++
T Consensus 13 ~~~kI~iIG~-G~mG~ala~~L~~~G~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~--aDvVil~ 87 (335)
T 1z82_A 13 MEMRFFVLGA-GSWGTVFAQMLHENGEEVI-LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK--EDILVIA 87 (335)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT--TEEEEEC
T ss_pred cCCcEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC--CCEEEEE
Confidence 3789999999 9999999999999999864 56654200 111 12 456667777 443 8999999
Q ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 95 VPPPGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
+|+..+.++++++.. .=+.++.++.|++.+
T Consensus 88 vk~~~~~~v~~~l~~-~~~~vv~~~nGi~~~ 117 (335)
T 1z82_A 88 IPVQYIREHLLRLPV-KPSMVLNLSKGIEIK 117 (335)
T ss_dssp SCGGGHHHHHTTCSS-CCSEEEECCCCCCTT
T ss_pred CCHHHHHHHHHHhCc-CCCEEEEEeCCCCCC
Confidence 999888888876543 223566677788653
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00043 Score=62.73 Aligned_cols=107 Identities=13% Similarity=0.216 Sum_probs=70.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecC-chhHHHHH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVP-PPGAAKAI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp-~~~~~~~~-- 104 (306)
++|+|+|+ |.+|+...+.+.+.|+++. .+|++... +. -.|+..+.+++++.+. .|++++++| +..+.+++
T Consensus 6 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~D~vi~~v~~~~~~~~~~~~ 81 (299)
T 1vpd_A 6 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAEQ--CDVIITMLPNSPHVKEVALG 81 (299)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHHHS
T ss_pred ceEEEECc-hHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHCCCeecCCHHHHHhC--CCEEEEECCCHHHHHHHHhC
Confidence 48999998 9999999999999999864 66765310 11 1377888899887765 999999999 45556666
Q ss_pred -HHHHH---cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 -HEALD---AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 -~e~~~---~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
++... .| +.++..++|.+. ..+++. +..++.|+.++.
T Consensus 82 ~~~l~~~l~~~-~~vv~~s~~~~~-~~~~l~-~~~~~~g~~~~~ 122 (299)
T 1vpd_A 82 ENGIIEGAKPG-TVLIDMSSIAPL-ASREIS-DALKAKGVEMLD 122 (299)
T ss_dssp TTCHHHHCCTT-CEEEECSCCCHH-HHHHHH-HHHHTTTCEEEE
T ss_pred cchHhhcCCCC-CEEEECCCCCHH-HHHHHH-HHHHHcCCeEEE
Confidence 33332 33 234545666532 223332 344566776664
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00043 Score=62.64 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-ce--ecCe--eccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-KT--HLDL--PVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~~--i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.++|+|||+ |++|+...+.+.+. +++++ .+|++... +. -.|. ..+.+++++.+. .|++++++|+....+
T Consensus 6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~--aDvVilavp~~~~~~ 81 (290)
T 3b1f_A 6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIV-GYNRSDRSRDIALERGIVDEATADFKVFAAL--ADVIILAVPIKKTID 81 (290)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEE-EECSSHHHHHHHHHTTSCSEEESCTTTTGGG--CSEEEECSCHHHHHH
T ss_pred cceEEEEee-CHHHHHHHHHHHhCCCCcEEE-EEcCCHHHHHHHHHcCCcccccCCHHHhhcC--CCEEEEcCCHHHHHH
Confidence 368999998 99999998888887 56654 67765310 11 1344 355677776655 899999999999999
Q ss_pred HHHHHHHc--CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 103 AIHEALDA--EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 103 ~~~e~~~~--Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+++++... .-+.+++..++......+.+. +...+.+.++++
T Consensus 82 v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~-~~l~~~~~~~v~ 124 (290)
T 3b1f_A 82 FIKILADLDLKEDVIITDAGSTKYEIVRAAE-YYLKDKPVQFVG 124 (290)
T ss_dssp HHHHHHTSCCCTTCEEECCCSCHHHHHHHHH-HHHTTSSCEEEE
T ss_pred HHHHHHhcCCCCCCEEEECCCCchHHHHHHH-HhccccCCEEEE
Confidence 99887654 234455433443322222222 233333677775
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00045 Score=63.94 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=68.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC----CeEEEeeCCCCC---Cce--ecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG----TKVVGGVSPGKG---GKT--HLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g----~~vv~~VnP~~~---g~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.++|+|||+ |+||......|.+.| +++. ..|++.. -+. ..|+.+..+..++... .|++++++|+..+
T Consensus 22 ~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~--aDvVilav~~~~~ 97 (322)
T 2izz_A 22 SMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALRKMGVKLTPHNKETVQH--SDVLFLAVKPHII 97 (322)
T ss_dssp CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHHHHTCEEESCHHHHHHH--CSEEEECSCGGGH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHHHcCCEEeCChHHHhcc--CCEEEEEeCHHHH
Confidence 357999999 999999999999988 6654 6676541 011 2377777788777765 8999999999999
Q ss_pred HHHHHHHHHc-CC-CEEEEecCCCChhH
Q psy8894 101 AKAIHEALDA-EM-PLIVCITEGIPQLD 126 (306)
Q Consensus 101 ~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~ 126 (306)
.++++++... .- +.++.++.|.+.+.
T Consensus 98 ~~vl~~l~~~l~~~~ivvs~s~gi~~~~ 125 (322)
T 2izz_A 98 PFILDEIGADIEDRHIVVSCAAGVTISS 125 (322)
T ss_dssp HHHHHHHGGGCCTTCEEEECCTTCCHHH
T ss_pred HHHHHHHHhhcCCCCEEEEeCCCCCHHH
Confidence 9999887543 22 34454667887544
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00063 Score=62.33 Aligned_cols=109 Identities=14% Similarity=0.115 Sum_probs=70.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecC-chhHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVP-PPGAAKAIH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp-~~~~~~~~~ 105 (306)
.++|+|+|+ |++|+...+.+.+.|++++ .+|++.... . -.|+.++.+++++... .|++++++| +..+.+++.
T Consensus 30 ~~~I~iIG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~DvVi~av~~~~~~~~v~~ 105 (316)
T 2uyy_A 30 DKKIGFLGL-GLMGSGIVSNLLKMGHTVT-VWNRTAEKCDLFIQEGARLGRTPAEVVST--CDITFACVSDPKAAKDLVL 105 (316)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSGGGGHHHHHTTCEECSCHHHHHHH--CSEEEECCSSHHHHHHHHH
T ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHHcCCEEcCCHHHHHhc--CCEEEEeCCCHHHHHHHHc
Confidence 468999998 9999999999998899864 666653111 1 1367778888887765 899999999 677777766
Q ss_pred HHH---H-cCCC-EEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 106 EAL---D-AEMP-LIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 106 e~~---~-~Gi~-~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+.. + ..-. .++..++ ......+++. +...+.+.++++
T Consensus 106 ~~~~~~~~l~~~~~vv~~s~-~~~~~~~~l~-~~~~~~~~~~v~ 147 (316)
T 2uyy_A 106 GPSGVLQGIRPGKCYVDMST-VDADTVTELA-QVIVSRGGRFLE 147 (316)
T ss_dssp STTCGGGGCCTTCEEEECSC-CCHHHHHHHH-HHHHHTTCEEEE
T ss_pred CchhHhhcCCCCCEEEECCC-CCHHHHHHHH-HHHHHcCCEEEE
Confidence 431 1 2222 3333444 3333333333 234456777764
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00012 Score=56.35 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-cee--cCeecc-------CCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-KTH--LDLPVF-------NTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~~i--~Gip~y-------~sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|+|+|+ |.+|+...+.+.+.| ++++ .++++... +.. .++..+ .++.++.. ++|+++.++|..
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~-~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~ 80 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVT-VADHDLAALAVLNRMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF 80 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEE-EEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence 368999999 999999999999999 7754 55544200 011 132222 12444444 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.|++.+. +++
T Consensus 81 ~~~~~~~~~~~~g~~~~~-~~~ 101 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYFD-LTE 101 (118)
T ss_dssp GHHHHHHHHHHTTCEEEC-CCS
T ss_pred hhHHHHHHHHHhCCCEEE-ecC
Confidence 999999999999999754 453
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=97.35 E-value=3.9e-05 Score=73.83 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=68.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC--CCCCCceecCeeccCCHHhhhh--cCCCcEEEEecCchhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS--PGKGGKTHLDLPVFNTVKEARD--ATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn--P~~~g~~i~Gip~y~sl~el~~--~~~iDlavi~vp~~~~~~~ 103 (306)
++.++++|+|| |..|+...+.+.+.|+++++.+| |...|..+.|+|++.. +++++ ..+++.+++++ ....++
T Consensus 50 ~~~~~v~IiGA-G~~G~~l~~~l~~~g~~ivgfiDdd~~~~g~~i~GipV~~~-~~l~~~~~~~~~~viiai--~~r~~i 125 (409)
T 2py6_A 50 GNATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIIST-DRFTELATHDRDLVALNT--CRYDGP 125 (409)
T ss_dssp GGGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECH-HHHHHHHHTCTTEEEEEC--CCSHHH
T ss_pred CCCCeEEEEeC-CHHHHHHHHHHHHCCCEEEEEEeCCcccccCEECCEEEECH-HHHHHHHhCCCCEEEEec--cHHHHH
Confidence 66678999999 99999998877777999998887 4555678999999974 45543 34578888888 345788
Q ss_pred HHHHHHcCCCEEEEe
Q psy8894 104 IHEALDAEMPLIVCI 118 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~ 118 (306)
++.+.+.|++.+|.|
T Consensus 126 ~~~l~~~g~~~il~f 140 (409)
T 2py6_A 126 KRFFDQICRTHGIPH 140 (409)
T ss_dssp HHHHHHHHHHTTCCE
T ss_pred HHHHHhcCCCEEEec
Confidence 888888887777766
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0003 Score=66.12 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC---CCCceec-------C---eeccC--CHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG---KGGKTHL-------D---LPVFN--TVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~---~~g~~i~-------G---ip~y~--sl~el~~~~~iDlavi~ 94 (306)
.+|+|+|++|..|+...+.|.++ +++++.....+ ..|+.+. | +++.+ +.+++.+ ++|+++.|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~--~~Dvvf~a 82 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSP--GVDVVFLA 82 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCT--TCSEEEEC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhc--CCCEEEEC
Confidence 68999999999999999988885 77877654433 4444322 2 22221 3444433 49999999
Q ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 95 VPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+|...+.+.+.++.++|++.|- .++-|.
T Consensus 83 ~p~~~s~~~~~~~~~~g~~vID-lSa~fR 110 (337)
T 3dr3_A 83 TAHEVSHDLAPQFLEAGCVVFD-LSGAFR 110 (337)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEE-CSSTTS
T ss_pred CChHHHHHHHHHHHHCCCEEEE-cCCccc
Confidence 9999999999999999998554 677774
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00091 Score=60.45 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAIHEA 107 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~~e~ 107 (306)
+|+|+|+ |++|+...+.+.+.|++++ .+|++... +. -.|+.++.+++++... .|++++++|.. .+.+++++.
T Consensus 2 ~i~iiG~-G~mG~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~Dvvi~~vp~~~~~~~v~~~~ 77 (296)
T 2gf2_A 2 PVGFIGL-GNMGNPMAKNLMKHGYPLI-IYDVFPDACKEFQDAGEQVVSSPADVAEK--ADRIITMLPTSINAIEAYSGA 77 (296)
T ss_dssp CEEEECC-STTHHHHHHHHHHTTCCEE-EECSSTHHHHHHHTTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHHHST
T ss_pred eEEEEec-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeecCCHHHHHhc--CCEEEEeCCCHHHHHHHHhCc
Confidence 6999999 9999999999999999865 66765310 11 1377888899887765 89999999754 556666542
Q ss_pred ---HH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 108 ---LD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 108 ---~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.. ..-..+++-++|.+....+++.+ ..++.+..++
T Consensus 78 ~~~~~~l~~~~~vv~~s~~~~~~~~~~~~-~~~~~g~~~~ 116 (296)
T 2gf2_A 78 NGILKKVKKGSLLIDSSTIDPAVSKELAK-EVEKMGAVFM 116 (296)
T ss_dssp TSGGGTCCTTCEEEECSCCCHHHHHHHHH-HHHHTTCEEE
T ss_pred hhHHhcCCCCCEEEECCCCCHHHHHHHHH-HHHHcCCEEE
Confidence 11 12223444477877665554433 3344565443
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00018 Score=68.06 Aligned_cols=109 Identities=12% Similarity=0.017 Sum_probs=73.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCCCcee---c-CeeccCCHHhhhhcC--------------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKGGKTH---L-DLPVFNTVKEARDAT-------------- 86 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~g~~i---~-Gip~y~sl~el~~~~-------------- 86 (306)
++.+|+|+|+ |.+|+...+.+.+. ++++++..+.+. ... . |++.|.++.++.+..
T Consensus 3 k~i~vgIiG~-G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~--~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~ 79 (358)
T 1ebf_A 3 KVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAER--SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHL 79 (358)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSB--EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHH
T ss_pred ceEEEEEEec-CHHHHHHHHHHHhcCCCCCEEEEEEEECCh--hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHh
Confidence 4578999999 99999988888875 357887777543 222 1 677777777665431
Q ss_pred ----CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC-CC--hhHHHHHHHHHHHhcCCeEE
Q psy8894 87 ----GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG-IP--QLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 87 ----~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G-f~--e~~~~~~~~~~ar~~gi~ii 143 (306)
.+|++|+|+|...+.+...+|+++|++. ++...+ ++ .++..++ . +|+++|+.+.
T Consensus 80 ~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhV-VtaNkkpla~~~~~~~eL-~-~A~~~gv~~~ 140 (358)
T 1ebf_A 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISI-ATPNKKAFSSDLATWKAL-F-SNKPTNGFVY 140 (358)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEE-ECCCCGGGSSCHHHHHHH-T-CCCTTCCCEE
T ss_pred hhccCCcEEEEcCCChHHHHHHHHHHHCCCeE-EecCcccccCCHHHHHHH-H-HHHHcCCEEE
Confidence 2379999999887777778999999884 321232 22 1233343 4 6788887654
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00027 Score=66.08 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC--CCc--eec------------------CeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK--GGK--THL------------------DLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~--~g~--~i~------------------Gip~y~sl~el~~~~~ 87 (306)
.+|+|+|+ |.+|+...+.+.+. ++++++..++.. .+. +.. ++++|.+.+++...
T Consensus 3 irVgIiG~-G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred cEEEEEeE-hHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 58999999 99999999988876 778887665432 100 011 23677788888764
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
+|++++++|...+.+.++.++++|.+ |+ ++...
T Consensus 80 vDvV~~aTp~~~h~~~a~~~l~aGk~-Vi-~sap~ 112 (334)
T 2czc_A 80 VDIIVDATPGGIGAKNKPLYEKAGVK-AI-FQGGE 112 (334)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCE-EE-ECTTS
T ss_pred CCEEEECCCccccHHHHHHHHHcCCc-eE-eeccc
Confidence 99999999999999999999999966 55 35443
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00039 Score=68.24 Aligned_cols=110 Identities=17% Similarity=0.160 Sum_probs=74.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee------cCeeccCCHHhhhhc-CCCcEEEEecCc-hhH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH------LDLPVFNTVKEARDA-TGAEATVIYVPP-PGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i------~Gip~y~sl~el~~~-~~iDlavi~vp~-~~~ 100 (306)
.++|+|+|+ |.||+...++|.+.|+++. ..|++... +++ .|+....+++++... ..+|++++++|+ ..+
T Consensus 15 ~~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 92 (480)
T 2zyd_A 15 KQQIGVVGM-AVMGRNLALNIESRGYTVS-IFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT 92 (480)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred CCeEEEEcc-HHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence 467999999 9999999999999999864 66765310 111 177788889887652 138999999999 578
Q ss_pred HHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 101 AKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 101 ~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.++++++... .- +.++..++|..+ +..++. +..++.|++++
T Consensus 93 ~~vl~~l~~~l~~g~iIId~s~g~~~-~t~~l~-~~l~~~g~~~v 135 (480)
T 2zyd_A 93 DAAIDSLKPYLDKGDIIIDGGNTFFQ-DTIRRN-RELSAEGFNFI 135 (480)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHH-HHHHHTTCEEE
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHH-HHHHHCCCCee
Confidence 8888877653 22 234445666543 223333 34456687766
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00019 Score=67.34 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=69.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc---------CCeEEEeeCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCch-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY---------GTKVVGGVSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPP- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~---------g~~vv~~VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~- 98 (306)
+.+|+|+|+ |.+|+...+.+.+. ++++++..+.+.... .+....+|.+++++. + +|++++++|..
T Consensus 3 ~irvgIiG~-G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~--iDvVve~t~~~~ 78 (332)
T 2ejw_A 3 ALKIALLGG-GTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-E--ADLVVEAMGGVE 78 (332)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-T--CSEEEECCCCSH
T ss_pred eeEEEEEcC-CHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-C--CCEEEECCCCcH
Confidence 568999999 99999888877664 467877777653111 122224677888888 4 99999999976
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhc
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQS 138 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~ 138 (306)
.+.+.+++|+++|++. ++-..+.-.++..++. ++|+++
T Consensus 79 ~a~~~~~~AL~aGKhV-VtaNkkpla~~~~eL~-~~A~~~ 116 (332)
T 2ejw_A 79 APLRLVLPALEAGIPL-ITANKALLAEAWESLR-PFAEEG 116 (332)
T ss_dssp HHHHHHHHHHHTTCCE-EECCHHHHHHSHHHHH-HHHHTT
T ss_pred HHHHHHHHHHHcCCeE-EECCchhHHHHHHHHH-HHHHhC
Confidence 5688999999999994 4311111112233443 577776
|
| >3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=63.72 Aligned_cols=110 Identities=24% Similarity=0.335 Sum_probs=85.7
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeCC-----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIGG----------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~~----------- 235 (306)
..|+|++++-||+++...++.+...|.....++-+|+.+ ..-.+.+.++.+.+||++++|++++-+.-
T Consensus 246 l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a-~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~ 324 (397)
T 3ufx_B 246 LDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGA-KADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVI 324 (397)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCC-CHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHH
T ss_pred CCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCC-CHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 569999999999999999999999999999999999984 23357778888899999999998654321
Q ss_pred ---CC--CCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHH
Q psy8894 236 ---GP--NAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELL 297 (306)
Q Consensus 236 ---~~--~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~ 297 (306)
.. .+||||+--.|... ..-.+.|++.|+...+++++-...+.
T Consensus 325 ~a~~~~~~~kPvvv~~~G~~~--------------------~~~~~~l~~~gip~~~~~e~Aa~~~~ 371 (397)
T 3ufx_B 325 RALEEGLLTKPVVMRVAGTAE--------------------EEAKKLLEGKPVYMYPTSIEAAKVTV 371 (397)
T ss_dssp HHHTTTCCCSCEEEEEEEECH--------------------HHHHHHTTTSSEEECSSHHHHHHHHH
T ss_pred HHHHhhCCCCcEEEEccCCCH--------------------HHHHHHHHhCCCcccCCHHHHHHHHH
Confidence 12 37999998887532 12246778889888888777666554
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00067 Score=66.52 Aligned_cols=109 Identities=9% Similarity=0.088 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee-------cCeeccCCHHhhhhc-CCCcEEEEecCch-hH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH-------LDLPVFNTVKEARDA-TGAEATVIYVPPP-GA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i-------~Gip~y~sl~el~~~-~~iDlavi~vp~~-~~ 100 (306)
++|+|||+ |.||+....+|.+.|+++. ..|++... +++ .|+..+.+++++.+. .++|++++++|+. .+
T Consensus 3 m~IgvIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v 80 (482)
T 2pgd_A 3 ADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80 (482)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred CeEEEECh-HHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHH
Confidence 47999999 9999999999999999864 66765310 011 457778889988641 1399999999995 77
Q ss_pred HHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 101 AKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 101 ~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.++++++... .- +.++..++|... +..++. +..++.|+.++
T Consensus 81 ~~vl~~l~~~l~~g~iII~~s~~~~~-~~~~l~-~~l~~~g~~~v 123 (482)
T 2pgd_A 81 DNFIEKLVPLLDIGDIIIDGGNSEYR-DTMRRC-RDLKDKGILFV 123 (482)
T ss_dssp HHHHHHHHHHCCTTCEEEECSCCCHH-HHHHHH-HHHHHTTCEEE
T ss_pred HHHHHHHHhhcCCCCEEEECCCCCHH-HHHHHH-HHHHHcCCeEe
Confidence 8888776542 22 334445566543 222332 33455677665
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=68.92 Aligned_cols=101 Identities=14% Similarity=0.157 Sum_probs=76.0
Q ss_pred cccccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC---CC-----ceecCeeccCCHHhhhhcC
Q psy8894 15 EEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK---GG-----KTHLDLPVFNTVKEARDAT 86 (306)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~---~g-----~~i~Gip~y~sl~el~~~~ 86 (306)
+.+|++.. + +-+.++|||+|. |..|.+...||++.|.+++-++-|.. .+ .+..|..+++ ++|+...
T Consensus 25 ~~eF~~~~-~--~lkgK~IaVIGy-GsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~-~~eA~~~- 98 (491)
T 3ulk_A 25 RDEFADGA-S--YLQGKKVVIVGC-GAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGT-YEELIPQ- 98 (491)
T ss_dssp GGGGTTTT-G--GGTTSEEEEESC-SHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEE-HHHHGGG-
T ss_pred HHHhcchh-H--HHcCCEEEEeCC-ChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecC-HHHHHHh-
Confidence 44565544 3 334589999999 99999999999999999765655321 00 1356888886 8888776
Q ss_pred CCcEEEEecCchhHHHHHHHHHHc--CCCEEEEecCCCC
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDA--EMPLIVCITEGIP 123 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~--Gi~~vvi~t~Gf~ 123 (306)
-|++++.+|.+...++.++ ++. .-...+.|+.||.
T Consensus 99 -ADvV~~L~PD~~q~~vy~~-I~p~lk~G~~L~faHGFn 135 (491)
T 3ulk_A 99 -ADLVINLTPDKQHSDVVRT-VQPLMKDGAALGYSHGFN 135 (491)
T ss_dssp -CSEEEECSCGGGHHHHHHH-HGGGSCTTCEEEESSCHH
T ss_pred -CCEEEEeCChhhHHHHHHH-HHhhCCCCCEEEecCccc
Confidence 8999999999988888876 553 3456778999994
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00028 Score=62.60 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=66.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC----eEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT----KVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~----~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
++|+|||+ |++|+...+.+.+.|+ ++. ..|++... + +..|+..+.+..++.+. .|++++++|+....+
T Consensus 3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~-~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~--aDvVilav~~~~~~~ 78 (247)
T 3gt0_A 3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQII-CSDLNTANLKNASEKYGLTTTTDNNEVAKN--ADILILSIKPDLYAS 78 (247)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEE-EECSCHHHHHHHHHHHCCEECSCHHHHHHH--CSEEEECSCTTTHHH
T ss_pred CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEE-EEeCCHHHHHHHHHHhCCEEeCChHHHHHh--CCEEEEEeCHHHHHH
Confidence 57999998 9999999999999998 654 66765311 1 12488888899888776 999999999999999
Q ss_pred HHHHHHHc-CCC-EEEEecCCCChhH
Q psy8894 103 AIHEALDA-EMP-LIVCITEGIPQLD 126 (306)
Q Consensus 103 ~~~e~~~~-Gi~-~vvi~t~Gf~e~~ 126 (306)
+++++... .-. .++..+.|++.+.
T Consensus 79 v~~~l~~~l~~~~~vvs~~~gi~~~~ 104 (247)
T 3gt0_A 79 IINEIKEIIKNDAIIVTIAAGKSIES 104 (247)
T ss_dssp HC---CCSSCTTCEEEECSCCSCHHH
T ss_pred HHHHHHhhcCCCCEEEEecCCCCHHH
Confidence 99876543 222 3443678887544
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00026 Score=66.19 Aligned_cols=89 Identities=22% Similarity=0.230 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+.++|+|||+ |++|+...+.|.+.|++++ ..+++... . ...|+.++ +++++... .|++++++|+....+++
T Consensus 15 ~~~~I~IIG~-G~mG~alA~~L~~~G~~V~-~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~--aDvVilavp~~~~~~v~ 89 (338)
T 1np3_A 15 QGKKVAIIGY-GSQGHAHACNLKDSGVDVT-VGLRSGSATVAKAEAHGLKVA-DVKTAVAA--ADVVMILTPDEFQGRLY 89 (338)
T ss_dssp HTSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHTTCEEE-CHHHHHHT--CSEEEECSCHHHHHHHH
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCcCEEE-EEECChHHHHHHHHHCCCEEc-cHHHHHhc--CCEEEEeCCcHHHHHHH
Confidence 3578999999 9999999999999999865 55655311 0 12466666 78787665 99999999999998888
Q ss_pred H-HHHHc-CCCEEEEecCCC
Q psy8894 105 H-EALDA-EMPLIVCITEGI 122 (306)
Q Consensus 105 ~-e~~~~-Gi~~vvi~t~Gf 122 (306)
+ +.... .-..+++...|+
T Consensus 90 ~~~i~~~l~~~~ivi~~~gv 109 (338)
T 1np3_A 90 KEEIEPNLKKGATLAFAHGF 109 (338)
T ss_dssp HHHTGGGCCTTCEEEESCCH
T ss_pred HHHHHhhCCCCCEEEEcCCc
Confidence 7 55432 233455566665
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0015 Score=60.20 Aligned_cols=108 Identities=10% Similarity=0.132 Sum_probs=72.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.++|++||. |+||....++|.+.||++. +-|...... .-.|.....|+.|+.+. .|+++.|+|...+.+.+-.
T Consensus 3 M~kIgfIGl-G~MG~~mA~~L~~~G~~v~-v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~--~dvv~~~l~~~~~v~~V~~ 78 (300)
T 3obb_A 3 MKQIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQG--ADVVISMLPASQHVEGLYL 78 (300)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHTT--CSEEEECCSCHHHHHHHHH
T ss_pred cCEEEEeee-hHHHHHHHHHHHhCCCeEE-EEcCCHHHHHHHHHcCCEEcCCHHHHHhc--CCceeecCCchHHHHHHHh
Confidence 368999999 9999999999999999965 556553101 12478888999999876 9999999998665544332
Q ss_pred H----HHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 107 A----LDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 107 ~----~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
- .+. .- +.++..|+.. .+..+++. +.++++|++++
T Consensus 79 ~~~g~~~~~~~g~iiId~sT~~-p~~~~~~a-~~~~~~G~~~l 119 (300)
T 3obb_A 79 DDDGLLAHIAPGTLVLECSTIA-PTSARKIH-AAARERGLAML 119 (300)
T ss_dssp SSSSSTTSCCC-CEEEECSCCC-HHHHHHHH-HHHHTTTCEEE
T ss_pred chhhhhhcCCCCCEEEECCCCC-HHHHHHHH-HHHHHcCCEEE
Confidence 1 111 11 2344355544 34444443 45678898777
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0004 Score=65.24 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccC-----------------CHHhhhhcCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFN-----------------TVKEARDATGA 88 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~-----------------sl~el~~~~~i 88 (306)
.||+|+|+ |++|+...+.+.+. ++++++..++..... .-.|+++|. +++++.+. +
T Consensus 2 ikVgIiGa-G~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~--v 78 (340)
T 1b7g_O 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT--S 78 (340)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH--C
T ss_pred eEEEEEec-CHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC--C
Confidence 48999999 99999999988876 788887766542100 012455553 33344334 9
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
|++++|+|+....+..+.++++|++.+.+
T Consensus 79 DvV~~aTp~~~s~~~a~~~~~aG~kvV~~ 107 (340)
T 1b7g_O 79 DIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107 (340)
T ss_dssp SEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred CEEEECCCCchhHHHHHHHHHcCCeEEEe
Confidence 99999999999999999999999997653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00044 Score=65.10 Aligned_cols=110 Identities=16% Similarity=0.231 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeE-EEeeCCCCCC---c--eecCeec--cCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKV-VGGVSPGKGG---K--THLDLPV--FNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~v-v~~VnP~~~g---~--~i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.+||+|+|+ |..|+.+.+.|.+ .+++ ++.++++... + ....+.+ ..++.++..+ .|++|.++|+...
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~--~DvVi~~~p~~~~ 90 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKE--FELVIGALPGFLG 90 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTT--CSEEEECCCGGGH
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhC--CCEEEEecCCccc
Confidence 4578999999 9999998888765 4553 3334432100 0 0111112 2235555554 8999999999999
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
..+++.|++.|++.+- + +...++ ..++. +.|++.|+.++ |.|
T Consensus 91 ~~v~~~~~~~g~~yvD-~-s~~~~~-~~~l~-~~a~~~g~~~i-~~~ 132 (365)
T 3abi_A 91 FKSIKAAIKSKVDMVD-V-SFMPEN-PLELR-DEAEKAQVTIV-FDA 132 (365)
T ss_dssp HHHHHHHHHHTCEEEE-C-CCCSSC-GGGGH-HHHHHTTCEEE-CCC
T ss_pred chHHHHHHhcCcceEe-e-eccchh-hhhhh-hhhccCCceee-ecC
Confidence 9999999999999654 2 333332 22332 45778887776 444
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00052 Score=64.33 Aligned_cols=106 Identities=18% Similarity=0.242 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH-H-H
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI-H-E 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~-~-e 106 (306)
.++|+|+|+ |++|+...+.+..+|++++ ..|+.. +...|...+.+++++..+ .|++++++|.. .+..++ + .
T Consensus 164 g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~dr~~--~~~~g~~~~~~l~ell~~--aDvVil~vP~~~~t~~li~~~~ 237 (333)
T 3ba1_A 164 GKRVGIIGL-GRIGLAVAERAEAFDCPIS-YFSRSK--KPNTNYTYYGSVVELASN--SDILVVACPLTPETTHIINREV 237 (333)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSC--CTTCCSEEESCHHHHHHT--CSEEEECSCCCGGGTTCBCHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCc--hhccCceecCCHHHHHhc--CCEEEEecCCChHHHHHhhHHH
Confidence 468999999 9999999999999999975 667664 223366667889998776 99999999974 343333 1 1
Q ss_pred --HHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 107 --ALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 107 --~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
..+.| ..+++.+.|... +.+++.+ ..++.+++-.|
T Consensus 238 l~~mk~g-ailIn~srG~~v-d~~aL~~-aL~~g~i~ga~ 274 (333)
T 3ba1_A 238 IDALGPK-GVLINIGRGPHV-DEPELVS-ALVEGRLGGAG 274 (333)
T ss_dssp HHHHCTT-CEEEECSCGGGB-CHHHHHH-HHHHTSSCEEE
T ss_pred HhcCCCC-CEEEECCCCchh-CHHHHHH-HHHcCCCeEEE
Confidence 22233 234556666432 2233333 33555554444
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00045 Score=65.07 Aligned_cols=90 Identities=23% Similarity=0.196 Sum_probs=62.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEee-CCCCCCceec----------------CeeccC-CHHhhhhcCCCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGV-SPGKGGKTHL----------------DLPVFN-TVKEARDATGAE 89 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~V-nP~~~g~~i~----------------Gip~y~-sl~el~~~~~iD 89 (306)
+..+|+|+||+|..|+...+.|.++ .+++++.. ..+..|+.+. .+.+.. +.+++ . ++|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--~vD 79 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K--DVD 79 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T--TCS
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c--CCC
Confidence 3478999999999999999988876 66777554 2322233221 111211 23343 3 499
Q ss_pred EEEEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
++++++|...+.+.++.+.+.|++ ++-.++-|
T Consensus 80 vVf~atp~~~s~~~a~~~~~aG~~-VId~s~~~ 111 (350)
T 2ep5_A 80 VVLSALPNELAESIELELVKNGKI-VVSNASPF 111 (350)
T ss_dssp EEEECCCHHHHHHHHHHHHHTTCE-EEECSSTT
T ss_pred EEEECCChHHHHHHHHHHHHCCCE-EEECCccc
Confidence 999999999999999999999999 44455544
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0015 Score=61.56 Aligned_cols=114 Identities=23% Similarity=0.273 Sum_probs=80.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHH---HHHHc--CCeEEEeeCCCCCCcee--------cCeeccCCHHhhhhcCCCcEEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSK---QAIEY--GTKVVGGVSPGKGGKTH--------LDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~---~l~~~--g~~vv~~VnP~~~g~~i--------~Gip~y~sl~el~~~~~iDlav 92 (306)
.+..+++++|.|- |.+|+...| .+.++ ++++++.+ +...|+.. .|+|++.|++++.+. ++|+++
T Consensus 18 ~~~~~~~~vi~~~-g~~g~~~aKta~gllr~~~~~~iVgvi-~~~~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~lv 94 (350)
T 2g0t_A 18 LYQPGTPAAIVAW-GQLGTAHAKTTYGLLRHSRLFKPVCVV-AEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLI 94 (350)
T ss_dssp HSCTTEEEEEECT-TTTTSGGGHHHHHHHHHCSSEEEEEEE-SSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEE
T ss_pred hhCcCCCEEEEeC-CCCChHHHHHHHHHHhhCCCCeEEEEe-ecCCCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCEEE
Confidence 4556788999998 888876654 34555 68999999 87766542 369999999999864 599999
Q ss_pred EecCc------hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 93 IYVPP------PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 93 i~vp~------~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.+.+ +...+.+++|+++|... +..-.-+ ..+..++ .++|+++|..+++=
T Consensus 95 ig~a~~gg~l~~~~~~~I~~Al~~G~nV-vsglh~~-l~~~pel-~~~A~~~Gv~i~dv 150 (350)
T 2g0t_A 95 IGVSNPGGYLEEQIATLVKKALSLGMDV-ISGLHFK-ISQQTEF-LKIAHENGTRIIDI 150 (350)
T ss_dssp ECCCSCCHHHHHHHHHHHHHHHHTTCEE-EECCCC---CCHHHH-HHHHHHHTCCEEES
T ss_pred EEecCCCCCCCHHHHHHHHHHHHcCCcE-EeCChhh-hhCCHHH-HHHHHHCCCEEEEe
Confidence 98622 35568999999999984 4322222 2222333 35789999888864
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0009 Score=59.53 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
+|+|+|+ |++|+...+.|.+.|++++ ..|+....+. -.|+. .+++++.+. .|++++++|+....+.+++
T Consensus 2 ~I~iIG~-G~mG~~la~~l~~~g~~V~-~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~--aDvvi~~v~~~~~~~~~~~ 75 (264)
T 1i36_A 2 RVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVT--ETSEEDVYS--CPVVISAVTPGVALGAARR 75 (264)
T ss_dssp EEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCE--ECCHHHHHT--SSEEEECSCGGGHHHHHHH
T ss_pred eEEEEec-hHHHHHHHHHHHHCCCeEE-EeCCccCHHHHHHHHHCCCc--CCHHHHHhc--CCEEEEECCCHHHHHHHHH
Confidence 7999999 9999999999999999876 4676311011 13555 667777665 9999999999887777777
Q ss_pred HHHcCCCEEEEecCCCChhH
Q psy8894 107 ALDAEMPLIVCITEGIPQLD 126 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~ 126 (306)
+...--+ +++-.++.....
T Consensus 76 ~~~~~~~-~vi~~s~~~~~~ 94 (264)
T 1i36_A 76 AGRHVRG-IYVDINNISPET 94 (264)
T ss_dssp HHTTCCS-EEEECSCCCHHH
T ss_pred HHHhcCc-EEEEccCCCHHH
Confidence 6654333 444445554433
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00096 Score=65.77 Aligned_cols=110 Identities=10% Similarity=0.076 Sum_probs=73.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----e---cCeeccCCHHhhhhc-CCCcEEEEecCc-hhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----H---LDLPVFNTVKEARDA-TGAEATVIYVPP-PGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----i---~Gip~y~sl~el~~~-~~iDlavi~vp~-~~~ 100 (306)
.+|+|||+ |.||+....+|.+.|+++. ..|++... ++ . .|+....+++++.+. ..+|++++++|+ ..+
T Consensus 11 ~~IgvIGl-G~MG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v 88 (497)
T 2p4q_A 11 ADFGLIGL-AVMGQNLILNAADHGFTVC-AYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV 88 (497)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred CCEEEEee-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence 57999999 9999999999999999875 66665310 11 1 367788889887652 138999999999 578
Q ss_pred HHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 101 AKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 101 ~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.++++++... .- +.++..+++.++ +..++.+ ..++.|+++++
T Consensus 89 ~~vl~~l~~~l~~g~iIId~s~~~~~-~~~~l~~-~l~~~g~~~v~ 132 (497)
T 2p4q_A 89 DALINQIVPLLEKGDIIIDGGNSHFP-DSNRRYE-ELKKKGILFVG 132 (497)
T ss_dssp HHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHH-HHHHTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEECCCCChh-HHHHHHH-HHHHcCCceeC
Confidence 8888776653 22 233435555533 3333333 34566877664
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.001 Score=59.80 Aligned_cols=107 Identities=9% Similarity=-0.062 Sum_probs=66.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~~e 106 (306)
++|+|+|+ |++|+...+.+.+ |++++ .+|++... +.+ .|+..+. ++++... .|++++++|... +.+++++
T Consensus 2 ~~i~iiG~-G~~G~~~a~~l~~-g~~V~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~--~D~vi~~v~~~~~~~~v~~~ 75 (289)
T 2cvz_A 2 EKVAFIGL-GAMGYPMAGHLAR-RFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVAE--ARVIFTCLPTTREVYEVAEA 75 (289)
T ss_dssp CCEEEECC-STTHHHHHHHHHT-TSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGGG--CSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEcc-cHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHCCCcccC-HHHHHhC--CCEEEEeCCChHHHHHHHHH
Confidence 47999999 9999999999998 99864 66765310 111 2555555 6666555 999999999775 6667766
Q ss_pred HHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 107 ALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 107 ~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+... .-..+++..+.......+++. +..++.++.++.
T Consensus 76 l~~~l~~~~~vv~~s~~~~~~~~~l~-~~~~~~g~~~~~ 113 (289)
T 2cvz_A 76 LYPYLREGTYWVDATSGEPEASRRLA-ERLREKGVTYLD 113 (289)
T ss_dssp HTTTCCTTEEEEECSCCCHHHHHHHH-HHHHTTTEEEEE
T ss_pred HHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCEEEE
Confidence 5442 233444433333323333333 345556766653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00084 Score=57.75 Aligned_cols=88 Identities=20% Similarity=0.158 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Ccee-cCeeccC-------CHHhhhhcCCCcEEEEecCch--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GKTH-LDLPVFN-------TVKEARDATGAEATVIYVPPP-- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~~i-~Gip~y~-------sl~el~~~~~iDlavi~vp~~-- 98 (306)
.++|.|.|++|..|+...+.|.+.|++++.. +.+.. .... .++.++. ++.++.+ ++|++|-+..+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~ 80 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAV-VRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGWN 80 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEE-CSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC---
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEE-EcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCCC
Confidence 4789999999999999999999999997744 33210 0111 2333332 2444444 499999876543
Q ss_pred ----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 81 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 112 (227)
T 3dhn_A 81 NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112 (227)
T ss_dssp ---CCSHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4566888888999988887665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00056 Score=64.56 Aligned_cols=93 Identities=19% Similarity=0.129 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----------ec------CeeccCCHHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----------HL------DLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----------i~------Gip~y~sl~el~~~~~iDla 91 (306)
++++|+|+|+ |.+|......|.+.|+++. .++++..- +. .. ++....++++..+. .|++
T Consensus 28 ~~mkI~VIGa-G~mG~alA~~La~~G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~--aDvV 103 (356)
T 3k96_A 28 FKHPIAILGA-GSWGTALALVLARKGQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG--VTDI 103 (356)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT--CCEE
T ss_pred cCCeEEEECc-cHHHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc--CCEE
Confidence 3568999999 9999999999999898854 44443100 00 01 23455678777654 8999
Q ss_pred EEecCchhHHHHHHHHHHc-C-CCEEEEecCCCChh
Q psy8894 92 VIYVPPPGAAKAIHEALDA-E-MPLIVCITEGIPQL 125 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e~ 125 (306)
++++|+....+++++.... . =..++..+.|+...
T Consensus 104 ilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~ 139 (356)
T 3k96_A 104 LIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKG 139 (356)
T ss_dssp EECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred EECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence 9999999999998887653 2 22455577888654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00083 Score=62.16 Aligned_cols=107 Identities=8% Similarity=0.015 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCC--C--ce------ecCeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKG--G--KT------HLDLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~--g--~~------i~Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
++|+|||+ |.+|....+.|.+.| ++++ ..|++.. . ++ -.|+ +. +++++.+. .|++++++|+.
T Consensus 25 m~IgvIG~-G~mG~~lA~~L~~~G~~~V~-~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~--aDvVi~avp~~ 98 (317)
T 4ezb_A 25 TTIAFIGF-GEAAQSIAGGLGGRNAARLA-AYDLRFNDPAASGALRARAAELGV--EPLDDVAGIAC--ADVVLSLVVGA 98 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTTTCSEEE-EECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGG--CSEEEECCCGG
T ss_pred CeEEEECc-cHHHHHHHHHHHHcCCCeEE-EEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhc--CCEEEEecCCH
Confidence 68999998 999999999999999 8865 5565420 0 01 1255 66 78888776 89999999999
Q ss_pred hHHHHHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 99 GAAKAIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 99 ~~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
...+.+++.... .-..+++-.++.+....+++. +..++.|++++.
T Consensus 99 ~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~-~~l~~~g~~~~d 144 (317)
T 4ezb_A 99 ATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAA-GAIATGKGSFVE 144 (317)
T ss_dssp GHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHH-HHHHTSSCEEEE
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHH-HHHHHcCCeEEe
Confidence 999988777653 223344434455444444443 345667776553
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0014 Score=58.86 Aligned_cols=90 Identities=13% Similarity=0.117 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCCc-e--ecCee--ccCCHHhhhh-cCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGGK-T--HLDLP--VFNTVKEARD-ATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g~-~--i~Gip--~y~sl~el~~-~~~iDlavi~vp~~~~~~ 102 (306)
++|+|+|+ |++|+...+.+.+.|+ +++ .+|++.... . -.|+. .+.+++++.. . .|++++++|+....+
T Consensus 2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--aDvVilavp~~~~~~ 77 (281)
T 2g5c_A 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVDLGIIDEGTTSIAKVEDFS--PDFVMLSSPVRTFRE 77 (281)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHHTTSCSEEESCGGGGGGTC--CSEEEECSCHHHHHH
T ss_pred cEEEEEec-CHHHHHHHHHHHhcCCCcEEE-EEeCCHHHHHHHHHCCCcccccCCHHHHhcCC--CCEEEEcCCHHHHHH
Confidence 47999998 9999999999998888 654 677753100 0 12443 3567777665 5 999999999999999
Q ss_pred HHHHHHHc-CCCEEEEecCCCCh
Q psy8894 103 AIHEALDA-EMPLIVCITEGIPQ 124 (306)
Q Consensus 103 ~~~e~~~~-Gi~~vvi~t~Gf~e 124 (306)
+++++... .-+.+++..++...
T Consensus 78 v~~~l~~~l~~~~iv~~~~~~~~ 100 (281)
T 2g5c_A 78 IAKKLSYILSEDATVTDQGSVKG 100 (281)
T ss_dssp HHHHHHHHSCTTCEEEECCSCCT
T ss_pred HHHHHHhhCCCCcEEEECCCCcH
Confidence 98887652 33344544445443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0004 Score=63.54 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeec-cCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPV-FNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~-y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.++|+|+|+ |++|+...+.|.+.|++++ ..|++... +. -.|... ..+++|+.+. .|++++++|.. .+..++
T Consensus 7 ~~~I~iIG~-G~mG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~--aDvvi~~vp~~~~~~~v~ 82 (303)
T 3g0o_A 7 DFHVGIVGL-GSMGMGAARSCLRAGLSTW-GADLNPQACANLLAEGACGAAASAREFAGV--VDALVILVVNAAQVRQVL 82 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCSEEESSSTTTTTT--CSEEEECCSSHHHHHHHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccCCHHHHHhc--CCEEEEECCCHHHHHHHH
Confidence 468999999 9999999999999999865 66765310 01 135555 7788888765 89999999986 444444
Q ss_pred ---HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 ---HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 ---~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
+++... .-..+++-++.......+++. +..++.|+.++.
T Consensus 83 ~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~-~~~~~~g~~~~~ 125 (303)
T 3g0o_A 83 FGEDGVAHLMKPGSAVMVSSTISSADAQEIA-AALTALNLNMLD 125 (303)
T ss_dssp C--CCCGGGSCTTCEEEECSCCCHHHHHHHH-HHHHTTTCEEEE
T ss_pred hChhhHHhhCCCCCEEEecCCCCHHHHHHHH-HHHHHcCCeEEe
Confidence 333332 223344434444443333333 345667776664
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.001 Score=65.50 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=72.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee-----cC--eeccCCHHhhhhc-CCCcEEEEecCch-h
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH-----LD--LPVFNTVKEARDA-TGAEATVIYVPPP-G 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i-----~G--ip~y~sl~el~~~-~~iDlavi~vp~~-~ 99 (306)
.++|+|||. |+||....++|.+.|++++ ..|++... +.. .| +..+.+++|+.+. .++|++++++|+. .
T Consensus 4 ~~kIgiIGl-G~MG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 81 (484)
T 4gwg_A 4 QADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQA 81 (484)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHH
T ss_pred CCEEEEECh-hHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHH
Confidence 367999999 9999999999999999875 66665410 011 13 2336788888752 1389999999995 6
Q ss_pred HHHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 100 AAKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.++++++... .- +.++..+++. ..+..++.+ ..++.|+++++.
T Consensus 82 v~~vl~~l~~~L~~g~iIId~st~~-~~~t~~~~~-~l~~~Gi~fvd~ 127 (484)
T 4gwg_A 82 VDDFIEKLVPLLDTGDIIIDGGNSE-YRDTTRRCR-DLKAKGILFVGS 127 (484)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCC-HHHHHHHHH-HHHHTTCEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCC-chHHHHHHH-HHHhhccccccC
Confidence 77788777653 22 2333344444 333333333 346678877653
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0018 Score=59.10 Aligned_cols=81 Identities=12% Similarity=0.171 Sum_probs=60.2
Q ss_pred cEEEEEc-CCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQG-FTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvG-asg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
++|+||| + |.+|....+.+.+.|++++ .++++. . .+..++... .|++++++|+....+++++...
T Consensus 22 ~~I~iIGg~-G~mG~~la~~l~~~G~~V~-~~~~~~--~--------~~~~~~~~~--aDvVilavp~~~~~~vl~~l~~ 87 (298)
T 2pv7_A 22 HKIVIVGGY-GKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILAN--ADVVIVSVPINLTLETIERLKP 87 (298)
T ss_dssp CCEEEETTT-SHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHTT--CSEEEECSCGGGHHHHHHHHGG
T ss_pred CEEEEEcCC-CHHHHHHHHHHHhCCCeEE-EEECCc--c--------cCHHHHhcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 5799999 6 9999999999999999865 677664 2 245566554 8999999999999999988765
Q ss_pred c-CCCEEEEecCCCChh
Q psy8894 110 A-EMPLIVCITEGIPQL 125 (306)
Q Consensus 110 ~-Gi~~vvi~t~Gf~e~ 125 (306)
. .-..+++..++....
T Consensus 88 ~l~~~~iv~~~~svk~~ 104 (298)
T 2pv7_A 88 YLTENMLLADLTSVKRE 104 (298)
T ss_dssp GCCTTSEEEECCSCCHH
T ss_pred hcCCCcEEEECCCCCcH
Confidence 2 333455445565443
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00066 Score=64.20 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec-------Ce---e-ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL-------DL---P-VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~-------Gi---p-~y~sl~el~~~~~iDlavi~vp~ 97 (306)
..+|+|+|++|..|+...+.|.++ .+++++..++...+..+. |. . .+.+ ++... ++|++++|+|.
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~--~vDvVf~atp~ 92 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFS--TVDAVFCCLPH 92 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGG--GCSEEEECCCT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhc--CCCEEEEcCCc
Confidence 468999999999999999998887 568886666554333221 11 0 0111 22222 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.+..+ +.|++ ++-.++-|.
T Consensus 93 ~~s~~~a~~~-~aG~~-VId~sa~~R 116 (359)
T 1xyg_A 93 GTTQEIIKEL-PTALK-IVDLSADFR 116 (359)
T ss_dssp TTHHHHHHTS-CTTCE-EEECSSTTT
T ss_pred hhHHHHHHHH-hCCCE-EEECCcccc
Confidence 9999999999 99997 444566564
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00084 Score=65.65 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=72.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee------cCeeccCCHHhhhhc-CCCcEEEEecCch-hHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH------LDLPVFNTVKEARDA-TGAEATVIYVPPP-GAA 101 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i------~Gip~y~sl~el~~~-~~iDlavi~vp~~-~~~ 101 (306)
++|+|||+ |.||+...++|.+.|+++. ..|++... +.+ .|+..+.+++++.+. .++|++++++|+. .+.
T Consensus 6 ~~IgvIG~-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~ 83 (474)
T 2iz1_A 6 ANFGVVGM-AVMGKNLALNVESRGYTVA-IYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATD 83 (474)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHH
T ss_pred CcEEEEee-HHHHHHHHHHHHhCCCEEE-EEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHH
Confidence 57999999 9999999999999999864 67765310 111 167788899887652 1389999999994 677
Q ss_pred HHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 102 KAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 102 ~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
++++++... .- +.++..++|... +..++. +..++.|+++++
T Consensus 84 ~vl~~l~~~l~~g~iiId~s~~~~~-~~~~l~-~~l~~~g~~~v~ 126 (474)
T 2iz1_A 84 ATIKSLLPLLDIGDILIDGGNTHFP-DTMRRN-AELADSGINFIG 126 (474)
T ss_dssp HHHHHHGGGCCTTCEEEECSCCCHH-HHHHHH-HHTTTSSCEEEE
T ss_pred HHHHHHHhhCCCCCEEEECCCCCHH-HHHHHH-HHHHHCCCeEEC
Confidence 788766542 11 234445556532 333333 234556777663
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0038 Score=56.42 Aligned_cols=86 Identities=14% Similarity=0.107 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-------cCeeccCCHHhhhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-------LDLPVFNTVKEARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-------~Gip~y~sl~el~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|-.|+...+.|.+.|+++++...... ..++ .++. ..++.++.+. +|++|-+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~Dl~-~~~~~~~~~~--~d~Vih~a~~~~~~~~ 78 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG-NKAINDYEYRVSDYT-LEDLINQLND--VDAVVHLAATRGSQGK 78 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTT--CSEEEECCCCCCSSSC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC-cccCCceEEEEcccc-HHHHHHhhcC--CCEEEEccccCCCCCh
Confidence 68999999999999999999999999875543311 1111 2333 3446666654 9999977543
Q ss_pred --------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS 109 (311)
T 3m2p_A 79 ISEFHDNEILTQNLYDACYENNISNIVYAST 109 (311)
T ss_dssp GGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 23467888888999998776664
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00064 Score=64.35 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecC----------------eeccC-CHHhhhhcCCC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLD----------------LPVFN-TVKEARDATGA 88 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~G----------------ip~y~-sl~el~~~~~i 88 (306)
+++..+|+|+|++|-.|....+.|.++ .+++......+..|+.+.. +.+.. +.+++ . ++
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~-~--~v 80 (359)
T 4dpk_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM-D--DV 80 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC-T--TC
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh-c--CC
Confidence 345689999999999999999988777 5677766666665654321 11211 12222 2 49
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
|+++.|+|...+.+.+.++.+.|++.|. .|+-|.
T Consensus 81 Dvvf~a~p~~~s~~~a~~~~~~G~~vID-lSa~~R 114 (359)
T 4dpk_A 81 DIIFSPLPQGAAGPVEEQFAKEGFPVIS-NSPDHR 114 (359)
T ss_dssp CEEEECCCTTTHHHHHHHHHHTTCEEEE-CSSTTT
T ss_pred CEEEECCChHHHHHHHHHHHHCCCEEEE-cCCCcc
Confidence 9999999999999999999999998655 576553
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00064 Score=64.35 Aligned_cols=93 Identities=16% Similarity=0.074 Sum_probs=66.6
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecC----------------eeccC-CHHhhhhcCCC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLD----------------LPVFN-TVKEARDATGA 88 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~G----------------ip~y~-sl~el~~~~~i 88 (306)
+++..+|+|+|++|-.|....+.|.++ .+++......+..|+.+.. +.+.. +.+++ . ++
T Consensus 4 M~~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~~-~--~v 80 (359)
T 4dpl_A 4 MRRTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKLM-D--DV 80 (359)
T ss_dssp --CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGGC-T--TC
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHHHh-c--CC
Confidence 345689999999999999999988777 5677766666665654321 11211 12222 2 49
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
|+++.|+|...+.+.+.++.+.|++.|. .|+-|.
T Consensus 81 Dvvf~a~p~~~s~~~a~~~~~~G~~vID-lSa~~R 114 (359)
T 4dpl_A 81 DIIFSPLPQGAAGPVEEQFAKEGFPVIS-NSPDHR 114 (359)
T ss_dssp CEEEECCCTTTHHHHHHHHHHTTCEEEE-CSSTTT
T ss_pred CEEEECCChHHHHHHHHHHHHCCCEEEE-cCCCcc
Confidence 9999999999999999999999998655 576553
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.001 Score=62.30 Aligned_cols=86 Identities=19% Similarity=0.218 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---------ee-------------cCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---------TH-------------LDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---------~i-------------~Gip~y~sl~el~~~~~ 87 (306)
.||+|+|+ |.+|+...+.+.++ ++++++..+...... .+ .++++..+.+++...
T Consensus 2 ikVgIiGa-G~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~-- 78 (337)
T 1cf2_P 2 KAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE-- 78 (337)
T ss_dssp EEEEEECC-STTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT--
T ss_pred eEEEEEeE-CHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC--
Confidence 48999999 99999999988874 888886654431000 00 122222345555544
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+|++++|+|...+.+.++.++++|++ ++. +.+
T Consensus 79 vDvV~~atp~~~~~~~a~~~l~aG~~-VId-~sp 110 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMYKEKGIK-AIF-QGG 110 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCC-EEE-CTT
T ss_pred CCEEEECCCchhhHHHHHHHHHcCCE-EEE-ecC
Confidence 99999999999999999999999988 443 444
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=59.07 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCee--ccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLP--VFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip--~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++|+|+|+ |++|+...+.+.+.|++++ .++++... +. -.|++ .+.+++++ .. .|++++++|+....++++
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~D~vi~av~~~~~~~~~~ 75 (279)
T 2f1k_A 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLL-QT--AKIIFLCTPIQLILPTLE 75 (279)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGG-TT--CSEEEECSCHHHHHHHHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHhCCCCccccCCHHHh-CC--CCEEEEECCHHHHHHHHH
Confidence 37999998 9999999999999999865 66765310 01 12442 56778888 54 999999999999999998
Q ss_pred HHHHc-CCCEEEEecCCCChhH
Q psy8894 106 EALDA-EMPLIVCITEGIPQLD 126 (306)
Q Consensus 106 e~~~~-Gi~~vvi~t~Gf~e~~ 126 (306)
++... .-..+++-.++.+...
T Consensus 76 ~l~~~~~~~~~vv~~~~~~~~~ 97 (279)
T 2f1k_A 76 KLIPHLSPTAIVTDVASVKTAI 97 (279)
T ss_dssp HHGGGSCTTCEEEECCSCCHHH
T ss_pred HHHhhCCCCCEEEECCCCcHHH
Confidence 87653 2233444344554433
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=62.91 Aligned_cols=87 Identities=15% Similarity=0.210 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-ce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-KT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++|+|+|+ |++|+...+.|.+.| +++. .+|++... +. ..|+.++.++.++. . .|++++++|+..+.++++
T Consensus 1 m~i~iiG~-G~mG~~~a~~l~~~g~~~v~-~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~--~D~vi~~v~~~~~~~v~~ 75 (263)
T 1yqg_A 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGVETSATLPELH-S--DDVLILAVKPQDMEAACK 75 (263)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCCEEESSCCCCC-T--TSEEEECSCHHHHHHHHT
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCeEE-EECCCHHHHHHHHHhcCCEEeCCHHHHh-c--CCEEEEEeCchhHHHHHH
Confidence 37999999 999999999998889 7754 66765310 11 13777777777766 5 999999999888888877
Q ss_pred HHHHcCCCEEEE-ecCCCCh
Q psy8894 106 EALDAEMPLIVC-ITEGIPQ 124 (306)
Q Consensus 106 e~~~~Gi~~vvi-~t~Gf~e 124 (306)
++.. . ..+++ ++.|++.
T Consensus 76 ~l~~-~-~~ivv~~~~g~~~ 93 (263)
T 1yqg_A 76 NIRT-N-GALVLSVAAGLSV 93 (263)
T ss_dssp TCCC-T-TCEEEECCTTCCH
T ss_pred Hhcc-C-CCEEEEecCCCCH
Confidence 6543 3 33443 4578875
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0012 Score=64.69 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=70.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecC-------eeccCCHHhhhhc-CCCcEEEEecCch
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLD-------LPVFNTVKEARDA-TGAEATVIYVPPP 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~G-------ip~y~sl~el~~~-~~iDlavi~vp~~ 98 (306)
++|+|||+ |.||+....+|.+.|+++. .+|++... ++ ..| +..+.+++++.+. .++|++++++|+.
T Consensus 2 MkIgVIG~-G~mG~~lA~~La~~G~~V~-v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~ 79 (478)
T 1pgj_A 2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (478)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEECh-HHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCCh
Confidence 47999998 9999999999999999864 66765310 01 114 6777888887651 1389999999995
Q ss_pred -hHHHHHHHHHHc-CC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 -GAAKAIHEALDA-EM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 -~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.++++++... .- +.++..+.|... +..++. +..++.|+.++
T Consensus 80 ~~v~~vl~~l~~~l~~g~iIId~sng~~~-~~~~l~-~~l~~~g~~~v 125 (478)
T 1pgj_A 80 AATDSTIEQLKKVFEKGDILVDTGNAHFK-DQGRRA-QQLEAAGLRFL 125 (478)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECCCCCHH-HHHHHH-HHHHTTTCEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCCChH-HHHHHH-HHHHHCCCeEE
Confidence 677888766542 22 234445556533 223333 34456676655
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00084 Score=60.73 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
++|+|+|++|++|+...+.|.+.|++++ .+|++... +.. .|+.+. +..++.+. .|++++++|+..+.++++++
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~~--aDvVi~av~~~~~~~v~~~l 87 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLA-AIEIAPEGRDRLQGMGIPLT-DGDGWIDE--ADVVVLALPDNIIEKVAEDI 87 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEE-EECCSHHHHHHHHHTTCCCC-CSSGGGGT--CSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHhcCCCcC-CHHHHhcC--CCEEEEcCCchHHHHHHHHH
Confidence 5899999999999999999999999875 67765310 011 354443 55565554 99999999999999888877
Q ss_pred HHc-CCCEEE-EecCCC
Q psy8894 108 LDA-EMPLIV-CITEGI 122 (306)
Q Consensus 108 ~~~-Gi~~vv-i~t~Gf 122 (306)
... .-..++ ..++|.
T Consensus 88 ~~~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 88 VPRVRPGTIVLILDAAA 104 (286)
T ss_dssp GGGSCTTCEEEESCSHH
T ss_pred HHhCCCCCEEEECCCCc
Confidence 653 223333 345554
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0013 Score=61.69 Aligned_cols=89 Identities=12% Similarity=0.022 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCce--ecCe--eccC-CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKT--HLDL--PVFN-TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~--i~Gi--p~y~-sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|+||+|..|+...+.|.+. .+++++..+++..|+. +.|. .+.. +.+++ . ++|+++.++|.....+
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~~~-~--~~DvV~~a~g~~~s~~ 83 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDF-S--SVGLAFFAAAAEVSRA 83 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCG-G--GCSEEEECSCHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHHHh-c--CCCEEEEcCCcHHHHH
Confidence 57999999999999999988844 4556655555443432 2232 2221 12222 2 4999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.++.+.+.|++. +.+++-|.
T Consensus 84 ~a~~~~~aG~kv-Id~Sa~~r 103 (340)
T 2hjs_A 84 HAERARAAGCSV-IDLSGALE 103 (340)
T ss_dssp HHHHHHHTTCEE-EETTCTTT
T ss_pred HHHHHHHCCCEE-EEeCCCCC
Confidence 999999999984 44676664
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0027 Score=60.22 Aligned_cols=88 Identities=10% Similarity=0.009 Sum_probs=60.0
Q ss_pred cEEEEEcCCCCCChHHHH-HHHHcCCe---EEEeeCCCCCCceec---C--eeccC--CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSK-QAIEYGTK---VVGGVSPGKGGKTHL---D--LPVFN--TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~-~l~~~g~~---vv~~VnP~~~g~~i~---G--ip~y~--sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+|+|+||+|..|+...+ .+.+.+|. ++ .+..+..|+.+. | +.+.. +.+++ . ++|+++.|+|...
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~-~~~~~s~G~~v~~~~g~~i~~~~~~~~~~~-~--~~DvVf~a~g~~~ 77 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPV-FFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-K--ALDIIVTCQGGDY 77 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEE-EEESSSTTSBCCGGGTCCCBCEETTCHHHH-H--TCSEEEECSCHHH
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEE-EEEeCCCCCCccccCCCceEEEecCChHHh-c--CCCEEEECCCchh
Confidence 479999999999999998 56656653 33 333322344432 2 22332 23343 3 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCC
Q psy8894 100 AAKAIHEALDAEMPLIVC-ITEGI 122 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi-~t~Gf 122 (306)
..+.+..+.+.|+|.+|| .++-|
T Consensus 78 s~~~a~~~~~~G~k~vVID~ss~~ 101 (367)
T 1t4b_A 78 TNEIYPKLRESGWQGYWIDAASSL 101 (367)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSTT
T ss_pred HHHHHHHHHHCCCCEEEEcCChhh
Confidence 999999999999976665 34444
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0018 Score=61.73 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC-CeEEEee-CCCCCCceecCe-e--------------ccCCHHh--hhhcCCCcE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGV-SPGKGGKTHLDL-P--------------VFNTVKE--ARDATGAEA 90 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~V-nP~~~g~~i~Gi-p--------------~y~sl~e--l~~~~~iDl 90 (306)
..+|+|+|++|-.|....+.|.++. +++.... ..+..|+.+..+ | .+.++++ ..+ ++|+
T Consensus 19 ~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~--~~Dv 96 (381)
T 3hsk_A 19 VKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFL--ECDV 96 (381)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGG--GCSE
T ss_pred ccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcc--cCCE
Confidence 4689999999999999999888874 5665444 565556554210 0 1111211 112 3999
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
++.|+|...+.+.+.++.+.|++.|- .++-|.
T Consensus 97 vf~alp~~~s~~~~~~~~~~G~~VID-lSa~fR 128 (381)
T 3hsk_A 97 VFSGLDADVAGDIEKSFVEAGLAVVS-NAKNYR 128 (381)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEE-CCSTTT
T ss_pred EEECCChhHHHHHHHHHHhCCCEEEE-cCCccc
Confidence 99999999999999999999998544 576663
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0013 Score=61.75 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhc--CCCcEEEEecCchhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDA--TGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~--~~iDlavi~vp~~~~~~~~ 104 (306)
.++|+|||+ |.+|....+.|.+.|++++ +.|++.... .-.|+..+.+++++... .+.|++++++|+..+.+++
T Consensus 8 ~~kIgIIG~-G~mG~slA~~L~~~G~~V~-~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl 85 (341)
T 3ktd_A 8 SRPVCILGL-GLIGGSLLRDLHAANHSVF-GYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLL 85 (341)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHH
T ss_pred CCEEEEEee-cHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHH
Confidence 467999998 9999999999999999875 677663101 12466667788776542 1379999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCC
Q psy8894 105 HEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+++....-..+++-.++..
T Consensus 86 ~~l~~~~~~~iv~Dv~Svk 104 (341)
T 3ktd_A 86 DAVHTHAPNNGFTDVVSVK 104 (341)
T ss_dssp HHHHHHCTTCCEEECCSCS
T ss_pred HHHHccCCCCEEEEcCCCC
Confidence 8877654444444344443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0015 Score=61.38 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH-HHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI-HEA 107 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~-~e~ 107 (306)
-++|+|+|. |++|+...+.++.+|++++ ..|+.. ....+...+.+++++.++ .|++++++|. +.+..++ ++.
T Consensus 171 gktiGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~sl~ell~~--aDvVil~vP~t~~t~~li~~~~ 244 (340)
T 4dgs_A 171 GKRIGVLGL-GQIGRALASRAEAFGMSVR-YWNRST--LSGVDWIAHQSPVDLARD--SDVLAVCVAASAATQNIVDASL 244 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSC--CTTSCCEECSSHHHHHHT--CSEEEECC----------CHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCc--ccccCceecCCHHHHHhc--CCEEEEeCCCCHHHHHHhhHHH
Confidence 578999999 9999999999999999976 667764 223345567799999886 9999999994 3444444 333
Q ss_pred H-HcCCCE-EEEecCCC
Q psy8894 108 L-DAEMPL-IVCITEGI 122 (306)
Q Consensus 108 ~-~~Gi~~-vvi~t~Gf 122 (306)
. ..+-.. +++.+.|-
T Consensus 245 l~~mk~gailIN~aRG~ 261 (340)
T 4dgs_A 245 LQALGPEGIVVNVARGN 261 (340)
T ss_dssp HHHTTTTCEEEECSCC-
T ss_pred HhcCCCCCEEEECCCCc
Confidence 3 333333 44455553
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00082 Score=59.67 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=61.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---------------ce---ecCeeccCCHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---------------KT---HLDLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---------------~~---i~Gip~y~sl~el~~~~~iDla 91 (306)
.++|+|+|+ |+||+...+.|.+.|++++ ..|++... .+ ..|...+.++.++.+. .|++
T Consensus 19 ~~kIgiIG~-G~mG~alA~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--aDvV 94 (245)
T 3dtt_A 19 GMKIAVLGT-GTVGRTMAGALADLGHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAG--AELV 94 (245)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHH--CSEE
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhc--CCEE
Confidence 578999998 9999999999999999865 45554310 00 1133445678887766 8999
Q ss_pred EEecCchhHHHHHHHH-HH-cCCCEEEEecCC
Q psy8894 92 VIYVPPPGAAKAIHEA-LD-AEMPLIVCITEG 121 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~-~~-~Gi~~vvi~t~G 121 (306)
++++|+....+++++. .. ..=+.++..+.|
T Consensus 95 ilavp~~~~~~~~~~i~~~~l~g~ivi~~s~~ 126 (245)
T 3dtt_A 95 VNATEGASSIAALTAAGAENLAGKILVDIANP 126 (245)
T ss_dssp EECSCGGGHHHHHHHHCHHHHTTSEEEECCCC
T ss_pred EEccCcHHHHHHHHHhhhhhcCCCEEEECCCC
Confidence 9999999999888765 32 122345555633
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0016 Score=61.31 Aligned_cols=90 Identities=18% Similarity=0.051 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEee-CCCCCCcee---cC-------------eecc-CCHHhhhhcCCCcEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGV-SPGKGGKTH---LD-------------LPVF-NTVKEARDATGAEAT 91 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~V-nP~~~g~~i---~G-------------ip~y-~sl~el~~~~~iDla 91 (306)
.+|+|+|++|..|+...+.|.++ ++++++.. ++...++.+ .+ +.+. .+.+++.+ .++|++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEF-EDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGG-TTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhc-CCCCEE
Confidence 68999999999999999988876 56777555 454333332 11 1111 13344433 149999
Q ss_pred EEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 92 VIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
++++|...+.+.++.+.+.|++ ++-.++-|
T Consensus 88 ~~atp~~~~~~~a~~~~~aG~~-VId~s~~~ 117 (354)
T 1ys4_A 88 FSALPSDLAKKFEPEFAKEGKL-IFSNASAY 117 (354)
T ss_dssp EECCCHHHHHHHHHHHHHTTCE-EEECCSTT
T ss_pred EECCCchHHHHHHHHHHHCCCE-EEECCchh
Confidence 9999999999999999999998 34334333
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0015 Score=61.29 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC-C-------------CCc----e----------ecC--eeccC--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG-K-------------GGK----T----------HLD--LPVFN-- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~-~-------------~g~----~----------i~G--ip~y~-- 77 (306)
.+|+|+|+ |+.|+.+.+.+.+. ++++++..+|. . .|. + +.| ++++.
T Consensus 4 ikVgI~G~-GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 4 IKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred eEEEEECc-CHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 58999999 99999999988876 88888776651 0 000 0 111 23453
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.++++- +.++|+++.|+|.....+.+..++++|+|.++|
T Consensus 83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVI 123 (337)
T 3e5r_O 83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI 123 (337)
T ss_dssp CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred ChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEE
Confidence 6777741 124999999999999999999999999998775
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0014 Score=60.33 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||.. ..........+++++.++ .|++++++|. +.+..++
T Consensus 122 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~l~ell~~--aDiV~l~~P~t~~t~~li 191 (290)
T 3gvx_A 122 GKALGILGY-GGIGRRVAHLAKAFGMRVI-AYTRSS--VDQNVDVISESPADLFRQ--SDFVLIAIPLTDKTRGMV 191 (290)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSSC--CCTTCSEECSSHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred cchheeecc-CchhHHHHHHHHhhCcEEE-EEeccc--cccccccccCChHHHhhc--cCeEEEEeeccccchhhh
Confidence 578999999 9999999999999999976 667764 222334556689999887 9999999995 4444443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.006 Score=57.90 Aligned_cols=114 Identities=12% Similarity=0.049 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCChHHHH-HHHHcCC---eEEEeeCCCCCCceec---C--eeccC--CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSK-QAIEYGT---KVVGGVSPGKGGKTHL---D--LPVFN--TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~-~l~~~g~---~vv~~VnP~~~g~~i~---G--ip~y~--sl~el~~~~~iDlavi~vp~~~ 99 (306)
.+|+|+||+|-.|+..++ .|.++.| +++..-..+ .|+.+. | +.+.. +.+++ + ++|+++.|+|...
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~~ 76 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKDAGMLHDAFDIESL-K--QLDAVITCQGGSY 76 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSCCCBCEETTCHHHH-T--TCSEEEECSCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCCceEEEecCChhHh-c--cCCEEEECCChHH
Confidence 479999999999999998 7777664 555343334 455432 2 12211 12333 2 4999999999999
Q ss_pred HHHHHHHHHHcCCCEEEE-ecCCCChh-H----HHHHHH-HH--HHhcCC-eEEccCCC
Q psy8894 100 AAKAIHEALDAEMPLIVC-ITEGIPQL-D----MVKVKH-RL--IRQSKS-RLIGPNCP 148 (306)
Q Consensus 100 ~~~~~~e~~~~Gi~~vvi-~t~Gf~e~-~----~~~~~~-~~--ar~~gi-~iiGPNc~ 148 (306)
+.+.+..+.+.|++.+|| .++-|.-+ + .-++-. ++ +++.++ .|..|||.
T Consensus 77 s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i~~~~~~~i~~Ianp~C~ 135 (370)
T 3pzr_A 77 TEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGTKTFVGGNCT 135 (370)
T ss_dssp HHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCchhccCCCCcEEcccCCHHHHhhhhhcCCcEEEcCChH
Confidence 999999999999964444 44444322 1 011111 12 234666 47799994
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0036 Score=57.28 Aligned_cols=92 Identities=9% Similarity=0.119 Sum_probs=57.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCC-CC--cee------cCeeccC-------CHHhhhhcCCCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGK-GG--KTH------LDLPVFN-------TVKEARDATGAE 89 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~-~g--~~i------~Gip~y~-------sl~el~~~~~iD 89 (306)
.+.++|.|.|++|-.|+.+.+.|++.| ++++ .++... .. ..+ .++..+. ++.++.+..++|
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKII-NFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEE-EEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEE-EEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 345789999999999999999999988 6665 333221 00 011 1233221 244444323489
Q ss_pred EEEEecCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 90 ATVIYVPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 90 lavi~vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++|-+.... .+..+++.|.+.|++.++.+++
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 149 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVST 149 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEE
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 998764321 1366788888999998776664
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0012 Score=61.93 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC-CCCC--------ce-----------------ecC--eecc--CCH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP-GKGG--------KT-----------------HLD--LPVF--NTV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP-~~~g--------~~-----------------i~G--ip~y--~sl 79 (306)
.||+|+|+ |+.|+.+.+.+.+. ++++++..+| ...+ +. +.| ++++ .+.
T Consensus 4 ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 4 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEEcc-CHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 58999998 99999999987775 7898877665 1100 00 112 2334 257
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++++- +.++|+++.++|.....+.+..++++|++.|++ +.
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~i-Sa 123 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII-SA 123 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE-SS
T ss_pred HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEe-cc
Confidence 77752 125999999999999999999999999998775 54
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0062 Score=57.96 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=71.9
Q ss_pred CcEEEEEcCCCCCChHHHH-HHHHcCC---eEEEeeCCCCCCceec---C--eeccC--CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSK-QAIEYGT---KVVGGVSPGKGGKTHL---D--LPVFN--TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~-~l~~~g~---~vv~~VnP~~~g~~i~---G--ip~y~--sl~el~~~~~iDlavi~vp~~ 98 (306)
+.+|+|+||+|-.|+..++ .|.++.| +++..-.. ..|+.+. | +.+.. +.+++ . ++|+++.|+|..
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~-~aG~~~~~~~~~~~~v~~~~~~~~~-~--~vDvvf~a~~~~ 79 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS-NAGGKAPSFAKNETTLKDATSIDDL-K--KCDVIITCQGGD 79 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS-CTTSBCCTTCCSCCBCEETTCHHHH-H--TCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech-hcCCCHHHcCCCceEEEeCCChhHh-c--CCCEEEECCChH
Confidence 4689999999999999998 7777664 45433333 4454432 2 12211 22333 2 499999999999
Q ss_pred hHHHHHHHHHHcCCCEEEE-ecCCCChh-H-------H-HHHHHHHHHhcCC-eEEccCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVC-ITEGIPQL-D-------M-VKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi-~t~Gf~e~-~-------~-~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.+.+.+..+.+.|++.+|| .++-|.-+ + . .+.+ +-+++.++ .|..|||.
T Consensus 80 ~s~~~~~~~~~~G~k~~VID~ss~fR~~~~~p~~vpevN~~~i-~~~~~~~i~~Ianp~C~ 139 (377)
T 3uw3_A 80 YTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI-KDALVNGTKNFIGGNCT 139 (377)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSSTTTTCTTEEEECHHHHHHHH-HHHHHTTCCEEEECCHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccccCCCCceECCcCCHHHH-hhhhhcCCcEEEcCCHH
Confidence 9999999999999964443 45545322 1 1 1111 11234565 57799995
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0023 Score=58.01 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-----ee-----------------------cCeeccCCHHh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-----TH-----------------------LDLPVFNTVKE 81 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-----~i-----------------------~Gip~y~sl~e 81 (306)
.++|+|+|+ |.||....+.+.+.|++++ .+|++.... .+ ..+....++++
T Consensus 4 ~~kV~VIGa-G~mG~~iA~~la~~G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 4 ITNVTVLGT-GVLGSQIAFQTAFHGFAVT-AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 478999999 9999999999999999975 566653100 00 01345567777
Q ss_pred hhhcCCCcEEEEecCch--hHHHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 82 ARDATGAEATVIYVPPP--GAAKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~--~~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
+... .|++|.++|.. ...++++++.+. .-..+++ .|++.+.++
T Consensus 82 ~~~~--aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~ 128 (283)
T 4e12_A 82 AVKD--ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSD 128 (283)
T ss_dssp HTTT--CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH
T ss_pred Hhcc--CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH
Confidence 6554 99999999987 666677776653 3344544 567776544
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0011 Score=62.09 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee----------------cCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH----------------LDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i----------------~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
+|+|+|+ |.+|......|.+.|+++. .++++... +.+ .++....+++++.+. .|+++++
T Consensus 17 kI~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDvVila 92 (366)
T 1evy_A 17 KAVVFGS-GAFGTALAMVLSKKCREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG--AEIILFV 92 (366)
T ss_dssp EEEEECC-SHHHHHHHHHHTTTEEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT--CSSEEEC
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC--CCEEEEC
Confidence 8999999 9999999989988888864 55554200 001 134555677776654 8999999
Q ss_pred cCchhHHHHHHH----HHH---c-CCCEEEEecCCCChh
Q psy8894 95 VPPPGAAKAIHE----ALD---A-EMPLIVCITEGIPQL 125 (306)
Q Consensus 95 vp~~~~~~~~~e----~~~---~-Gi~~vvi~t~Gf~e~ 125 (306)
+|+..+.+++++ +.. . +. .++.++.|+..+
T Consensus 93 v~~~~~~~v~~~~~~gl~~~l~~~~~-ivv~~~~gi~~~ 130 (366)
T 1evy_A 93 IPTQFLRGFFEKSGGNLIAYAKEKQV-PVLVCTKGIERS 130 (366)
T ss_dssp CCHHHHHHHHHHHCHHHHHHHHHHTC-CEEECCCSCCTT
T ss_pred CChHHHHHHHHHhHHHHHHhcCccCC-EEEEECCcCCCc
Confidence 999888888876 432 2 43 345567687654
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0041 Score=54.07 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhh--cCCCcEEEEecCchhH-HHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARD--ATGAEATVIYVPPPGA-AKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~--~~~iDlavi~vp~~~~-~~~~~e 106 (306)
.++++|+|| |..|+.+.+.+++.+|++++.+|.+....++.|+|++...+++++ +..+|.+++++|.... .++.+.
T Consensus 12 ~k~v~IiGA-Gg~g~~v~~~l~~~~~~~vgfiDd~~~~~~~~g~~Vlg~~~~~~~~~~~~~~~v~iAIg~~~~R~~i~~~ 90 (220)
T 4ea9_A 12 IGGVVIIGG-GGHAKVVIESLRACGETVAAIVDADPTRRAVLGVPVVGDDLALPMLREQGLSRLFVAIGDNRLRQKLGRK 90 (220)
T ss_dssp SSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECSCC---CBTTBCEEESGGGHHHHHHTTCCEEEECCCCHHHHHHHHHH
T ss_pred CCCEEEEcC-CHHHHHHHHHHHhCCCEEEEEEeCCcccCcCCCeeEECCHHHHHHhhcccccEEEEecCCHHHHHHHHHH
Confidence 457999999 778898888888889999999987653345889999986555432 1236778888876443 556677
Q ss_pred HHHcCCCEEEEec
Q psy8894 107 ALDAEMPLIVCIT 119 (306)
Q Consensus 107 ~~~~Gi~~vvi~t 119 (306)
+.+.|++....+.
T Consensus 91 l~~~g~~~~~~i~ 103 (220)
T 4ea9_A 91 ARDHGFSLVNAIH 103 (220)
T ss_dssp HHHTTCEECCEEC
T ss_pred HHhcCCCcCCcCC
Confidence 7788876544333
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.002 Score=55.23 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cC-------eeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LD-------LPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~G-------ip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|++|.+|+...+.|.+.|++++ .++++... +.+ .+ +. +.+++++.+. .|++++++|+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~D~Vi~~~~~~~ 76 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA--CDIAVLTIPWEH 76 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH--CSEEEECSCHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc--CCEEEEeCChhh
Confidence 3799999669999999999999999865 55554210 111 12 33 4567776665 999999999998
Q ss_pred HHHHHHHHHHc-CCCEEEEecCCCC
Q psy8894 100 AAKAIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 100 ~~~~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
+.++++++... .-+.++..++|++
T Consensus 77 ~~~~~~~l~~~~~~~~vi~~~~g~~ 101 (212)
T 1jay_A 77 AIDTARDLKNILREKIVVSPLVPVS 101 (212)
T ss_dssp HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 88888765431 2234555777776
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0059 Score=56.56 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-------CeEEEeeCCCCC------Ccee----------------cCeeccCCHHh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-------TKVVGGVSPGKG------GKTH----------------LDLPVFNTVKE 81 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-------~~vv~~VnP~~~------g~~i----------------~Gip~y~sl~e 81 (306)
++|+|+|+ |.+|......|.+.| +++. .++++.. .+.+ .++....++++
T Consensus 9 mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (354)
T 1x0v_A 9 KKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVT-MWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ 86 (354)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEE-EECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEE-EEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence 58999999 999999888888877 6654 5555431 0001 12444567777
Q ss_pred hhhcCCCcEEEEecCchhHHHHHHHHHHc-C-CCEEEEecCCCC
Q psy8894 82 ARDATGAEATVIYVPPPGAAKAIHEALDA-E-MPLIVCITEGIP 123 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf~ 123 (306)
+.+. .|++++++|+....+++++.... + =..++.++.|+.
T Consensus 87 ~~~~--aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 87 AAED--ADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp HHTT--CSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred HHcC--CCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 6554 89999999999989988877543 2 124555777885
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0035 Score=59.14 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec--------CeeccC-CHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL--------DLPVFN-TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~--------Gip~y~-sl~el~~~~~iDlavi~vp~~ 98 (306)
...+|+|+|++|-.|....+.|.++ .+++...-..+..|+.+. .+++.+ +.+++..+ +|++++++|..
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~--~Dvvf~alp~~ 89 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKN--CDVLFTALPAG 89 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHH--CSEEEECCSTT
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcC--CCEEEECCCcH
Confidence 3568999999999999999999887 566665445555555443 222222 23444333 99999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+.+.+.++ +|++. +=.++-|.
T Consensus 90 ~s~~~~~~~--~g~~V-IDlSsdfR 111 (351)
T 1vkn_A 90 ASYDLVREL--KGVKI-IDLGADFR 111 (351)
T ss_dssp HHHHHHTTC--CSCEE-EESSSTTT
T ss_pred HHHHHHHHh--CCCEE-EECChhhh
Confidence 999999988 78874 33677674
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.004 Score=59.09 Aligned_cols=89 Identities=21% Similarity=0.124 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCCceec--C--eeccC-CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGGKTHL--D--LPVFN-TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g~~i~--G--ip~y~-sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|+||+|..|+...+.|.+.++. +.....++..|+.+. | +.+-+ +.+++ + ++|+++.|+|...+.+
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~~~~-~--~~Dvvf~a~~~~~s~~ 79 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAF-E--GVDIALFSAGSSTSAK 79 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCTTTT-T--TCSEEEECSCHHHHHH
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCHHHh-c--CCCEEEECCChHhHHH
Confidence 58999999999999999988887653 444455655555432 2 11111 11222 2 4999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
.+..+.+.|++. +-.++-|.
T Consensus 80 ~a~~~~~~G~~v-IDlSa~~R 99 (366)
T 3pwk_A 80 YAPYAVKAGVVV-VDNTSYFR 99 (366)
T ss_dssp HHHHHHHTTCEE-EECSSTTT
T ss_pred HHHHHHHCCCEE-EEcCCccc
Confidence 999999999984 44676663
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=60.13 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC--CCCC-cee--cC-----------eeccC--CHHhhhhcCCCcEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP--GKGG-KTH--LD-----------LPVFN--TVKEARDATGAEATV 92 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP--~~~g-~~i--~G-----------ip~y~--sl~el~~~~~iDlav 92 (306)
++|+|+|+ |.+|......|.+.|+++. .+++ +... +.+ .| +.+.. ++++..+. .|+++
T Consensus 1 m~I~iiG~-G~mG~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~D~vi 76 (335)
T 1txg_A 1 MIVSILGA-GAMGSALSVPLVDNGNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN--AEVVL 76 (335)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT--CSEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc--CCEEE
Confidence 37999999 9999999999988899865 5665 3200 000 11 14444 66665544 99999
Q ss_pred EecCchhHHHHHHHHHHcCC-CEEEEecCCC
Q psy8894 93 IYVPPPGAAKAIHEALDAEM-PLIVCITEGI 122 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi-~~vvi~t~Gf 122 (306)
+++|+..+.++++++...+- +.++.++.|+
T Consensus 77 ~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 77 LGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp ECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred EcCChHHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 99999999998887654221 2344455687
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.013 Score=56.31 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=53.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---------------------cC-eeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---------------------LD-LPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---------------------~G-ip~y~sl~el~~~~~ 87 (306)
++|+|+|+ |.+|......|.+.|++++ .+|.+... +.+ .| +....++++....
T Consensus 1 mkI~VIG~-G~vG~~~A~~la~~G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT--
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhcc--
Confidence 37999998 9999999999999999975 55553200 000 22 4555667765554
Q ss_pred CcEEEEecCchh----------HHHHHHHHHH
Q psy8894 88 AEATVIYVPPPG----------AAKAIHEALD 109 (306)
Q Consensus 88 iDlavi~vp~~~----------~~~~~~e~~~ 109 (306)
.|++++++|... +.+++++...
T Consensus 77 aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~ 108 (436)
T 1mv8_A 77 SDVSFICVGTPSKKNGDLDLGYIETVCREIGF 108 (436)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCcccCCCcchHHHHHHHHHHHH
Confidence 899999998766 7777776654
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0051 Score=57.97 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=76.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHH----HHHHcCCeEEEeeCCCCCCcee-------cCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSK----QAIEYGTKVVGGVSPGKGGKTH-------LDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~----~l~~~g~~vv~~VnP~~~g~~i-------~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
.+..+++++|.+- |..|+...| .++..++++++.++....|+.. .|+|++.|++++.+. ++|++++.
T Consensus 3 ~~~~~~~~vi~~~-g~~~~~~aKta~gl~r~~~~~iVgvid~~~~G~d~ge~~g~~~gipi~~~l~~al~~-~~d~lvig 80 (349)
T 2obn_A 3 RLPLNQRVAILLH-EGTTGTIGKTGLALLRYSEAPIVAVIDRNCAGQSLREITGIYRYVPIVKSVEAALEY-KPQVLVIG 80 (349)
T ss_dssp ----CCCEEEECT-TTSSSSSCHHHHHHHHHCCSCEEEEECGGGTTSCHHHHHCCCSCCCEESSHHHHGGG-CCSEEEEC
T ss_pred cCCCCCcEEEEeC-CCCCcHHHHHhHHhhhcCCCcEEEEEeCCCCCCcHHHhcCCcCCCCccCCHHHHHhC-CCCEEEEE
Confidence 3445677888886 777654433 3444489999999987767543 259999999999864 69999998
Q ss_pred cCc------hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 95 VPP------PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 95 vp~------~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.+ +...+.+.+|+++|... +.. -...-.+..++ .++|++ |..++.=
T Consensus 81 ~a~~gG~l~~~~~~~i~~Al~~G~~V-vsg-lh~~l~~~pel-~~~A~~-g~~i~dv 133 (349)
T 2obn_A 81 IAPKGGGIPDDYWIELKTALQAGMSL-VNG-LHTPLANIPDL-NALLQP-GQLIWDV 133 (349)
T ss_dssp CCCCCC-SCGGGHHHHHHHHHTTCEE-EEC-SSSCCTTCHHH-HHHCCT-TCCEEET
T ss_pred ecCCCCCCCHHHHHHHHHHHHcCCcE-EeC-ccchhhCCHHH-HHHHHc-CCEEEEe
Confidence 622 46778999999999984 432 22222222223 357888 9888753
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0079 Score=58.24 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=67.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--------------------cCeeccCCHHhhhhcCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--------------------LDLPVFNTVKEARDATGA 88 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--------------------~Gip~y~sl~el~~~~~i 88 (306)
.++|+|+|+ |.+|......|.+ |++++ .+|.+..- +.+ .++....++++.... .
T Consensus 36 ~mkIaVIGl-G~mG~~lA~~La~-G~~V~-~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~--a 110 (432)
T 3pid_A 36 FMKITISGT-GYVGLSNGVLIAQ-NHEVV-ALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN--A 110 (432)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHT-TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT--C
T ss_pred CCEEEEECc-CHHHHHHHHHHHc-CCeEE-EEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC--C
Confidence 468999999 9999887777777 99976 55544200 000 134555667666655 8
Q ss_pred cEEEEecCch-----------hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCC
Q psy8894 89 EATVIYVPPP-----------GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCP 148 (306)
Q Consensus 89 Dlavi~vp~~-----------~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~ 148 (306)
|++++++|.. .+.++++......-..+++..+..+....+++.+ ...+.++. ..|..+
T Consensus 111 DvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~-~l~~~~v~-~sPe~~ 179 (432)
T 3pid_A 111 DYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKE-RLGIDNVI-FSPEFL 179 (432)
T ss_dssp SEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHH-HHTCCCEE-ECCCCC
T ss_pred CEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHH-HHhhccEe-ecCccC
Confidence 9999999986 4566666655533344555555555443344433 23344432 255543
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0019 Score=59.96 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc---CCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF---NTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y---~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..|+.. ....++..+ .+++++..+ .|++++++|. +.+..++
T Consensus 138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~-~~dr~~--~~~~~~~~~~~~~~l~ell~~--aDiV~l~~Plt~~t~~li 211 (315)
T 3pp8_A 138 EEFSVGIMGA-GVLGAKVAESLQAWGFPLR-CWSRSR--KSWPGVESYVGREELRAFLNQ--TRVLINLLPNTAQTVGII 211 (315)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCCEE-EEESSC--CCCTTCEEEESHHHHHHHHHT--CSEEEECCCCCGGGTTCB
T ss_pred CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EEcCCc--hhhhhhhhhcccCCHHHHHhh--CCEEEEecCCchhhhhhc
Confidence 3578999999 9999999999999999976 555543 223344333 578888876 9999999994 4455555
Q ss_pred -HHHHH-cCCCEEEE
Q psy8894 105 -HEALD-AEMPLIVC 117 (306)
Q Consensus 105 -~e~~~-~Gi~~vvi 117 (306)
++..+ ..-..+++
T Consensus 212 ~~~~l~~mk~gailI 226 (315)
T 3pp8_A 212 NSELLDQLPDGAYVL 226 (315)
T ss_dssp SHHHHTTSCTTEEEE
T ss_pred cHHHHhhCCCCCEEE
Confidence 33333 34444443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.016 Score=56.32 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce----------------------ecCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT----------------------HLDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~----------------------i~Gip~y~sl~el~~~~~ 87 (306)
++|+|+|+ |.+|......|.+.|++++ .+|.+..- +. ...+....+++++.+.
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~-- 78 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGANVR-CIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE-- 78 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCCEEE-EEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc--
Confidence 58999999 9999988889999999976 55554200 00 0124455677776655
Q ss_pred CcEEEEecCch----------hHHHHHHHHHHc-CCCEEEEecCCCChh
Q psy8894 88 AEATVIYVPPP----------GAAKAIHEALDA-EMPLIVCITEGIPQL 125 (306)
Q Consensus 88 iDlavi~vp~~----------~~~~~~~e~~~~-Gi~~vvi~t~Gf~e~ 125 (306)
.|++++++|.. .+.++++..... .-..+++..+.++..
T Consensus 79 aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg 127 (450)
T 3gg2_A 79 ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVG 127 (450)
T ss_dssp CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCc
Confidence 89999999987 788888777663 334555555555433
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0065 Score=55.95 Aligned_cols=96 Identities=17% Similarity=0.215 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC------Cce--------ecCeeccCCHHhhhhcCCCcEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG------GKT--------HLDLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~------g~~--------i~Gip~y~sl~el~~~~~iDla 91 (306)
+...+++|+|+|+ |.+|......|.+.|+++....++... |.. ...+++..+++++ . +.|++
T Consensus 15 ~~~~~~kI~IiGa-Ga~G~~~a~~L~~~G~~V~l~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~v 90 (318)
T 3hwr_A 15 LYFQGMKVAIMGA-GAVGCYYGGMLARAGHEVILIARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSAV-Q--GADLV 90 (318)
T ss_dssp -----CEEEEESC-SHHHHHHHHHHHHTTCEEEEECCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGGG-T--TCSEE
T ss_pred hhccCCcEEEECc-CHHHHHHHHHHHHCCCeEEEEEcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHHc-C--CCCEE
Confidence 3455689999999 999999998998889986533333210 000 0123344556554 2 38999
Q ss_pred EEecCchhHHHHHHHHHHc-C-CCEEEEecCCCChh
Q psy8894 92 VIYVPPPGAAKAIHEALDA-E-MPLIVCITEGIPQL 125 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e~ 125 (306)
++++|+....++++++... + =..++.++.|+..+
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~ 126 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENA 126 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHH
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcH
Confidence 9999999999998887643 2 13466689999654
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.014 Score=51.97 Aligned_cols=87 Identities=23% Similarity=0.227 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEee-CCCCCCce--ecCeeccC-------CHHhhhhcCCCcEEEEecCc--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGV-SPGKGGKT--HLDLPVFN-------TVKEARDATGAEATVIYVPP-- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~V-nP~~~g~~--i~Gip~y~-------sl~el~~~~~iDlavi~vp~-- 97 (306)
++|.|.|++|..|+...+.|.+. |+++++.+ +|... .. -.++.++. ++.++.+ ++|+++.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~-~~~~~~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV-PDDWRGKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS-CGGGBTTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH-HHhhhCCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc
Confidence 36999999999999999888887 89977553 23211 11 12333322 2444444 49999988654
Q ss_pred ------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 78 ~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss 106 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSGVAHIIFIGY 106 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 45567888999999998887665
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=54.22 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=57.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee----cCeeccCCHHhhhhcCCCcEEEEecCc------
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH----LDLPVFNTVKEARDATGAEATVIYVPP------ 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i----~Gip~y~sl~el~~~~~iDlavi~vp~------ 97 (306)
.+.++|.|.|++|-.|+...+.|++.|+++++...... ...+ .++.-..++.++.+ ++|+++-+...
T Consensus 17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~A~~~~~~~~ 93 (347)
T 4id9_A 17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS-GTGGEEVVGSLEDGQALSDAIM--GVSAVLHLGAFMSWAPA 93 (347)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC-SSCCSEEESCTTCHHHHHHHHT--TCSEEEECCCCCCSSGG
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC-CCCccEEecCcCCHHHHHHHHh--CCCEEEECCcccCcchh
Confidence 34578999999999999999999999999875533221 1111 11111223455555 49999876432
Q ss_pred ----------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ----------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ----------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 94 ~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS 126 (347)
T 4id9_A 94 DRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS 126 (347)
T ss_dssp GHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 12456788888899988887665
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0035 Score=57.46 Aligned_cols=90 Identities=14% Similarity=0.176 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e------------cCeeccC-------CHHhhhhcCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H------------LDLPVFN-------TVKEARDATGA 88 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i------------~Gip~y~-------sl~el~~~~~i 88 (306)
+.++|.|.|++|-.|+...+.|++.|+++++.........+ . .++..+. ++.++.+ ++
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 101 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK--GV 101 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT--TC
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc--CC
Confidence 46899999999999999999999999998755432210010 0 2333221 2444444 49
Q ss_pred cEEEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 89 EATVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 89 Dlavi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|++|-+... ..+..+++.|.+.|++.++.+++
T Consensus 102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS 151 (351)
T 3ruf_A 102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAAS 151 (351)
T ss_dssp SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 999977642 11334788888999988876654
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0061 Score=52.19 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCceecCeeccC-C-------HHhhhhcCCCcEEEEecCch---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKTHLDLPVFN-T-------VKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~i~Gip~y~-s-------l~el~~~~~iDlavi~vp~~--- 98 (306)
++|.|.|++|..|+...+.|.+.|+++++.. ++.. -.+..++.++. + +.++.+ ++|++|-+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~--~~d~vi~~ag~~~~~ 77 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQ-VPQYNNVKAVHFDVDWTPEEMAKQLH--GMDAIINVSGSGGKS 77 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGG-SCCCTTEEEEECCTTSCHHHHHTTTT--TCSEEEECCCCTTSS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccc-hhhcCCceEEEecccCCHHHHHHHHc--CCCEEEECCcCCCCC
Confidence 3799999999999999999999999977543 2221 01112333222 2 333333 499999876543
Q ss_pred -------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 78 ~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 106 (219)
T 3dqp_A 78 LLKVDLYGAVKLMQAAEKAEVKRFILLST 106 (219)
T ss_dssp CCCCCCHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cEeEeHHHHHHHHHHHHHhCCCEEEEECc
Confidence 3677889998999998887775
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0059 Score=53.16 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC-CeEEEee-CCCCCCce--ecCeeccC-------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGV-SPGKGGKT--HLDLPVFN-------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~V-nP~~~g~~--i~Gip~y~-------sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|.|++|..|+...+.|.+.| ++++... ++... .+ -.++.++. ++.++.+ ++|++|.+....
T Consensus 23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a~~~ 99 (236)
T 3qvo_A 23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-HKPYPTNSQIIMGDVLNHAALKQAMQ--GQDIVYANLTGE 99 (236)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-CSSCCTTEEEEECCTTCHHHHHHHHT--TCSEEEEECCST
T ss_pred ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-cccccCCcEEEEecCCCHHHHHHHhc--CCCEEEEcCCCC
Confidence 4789999999999999999999999 7866432 22210 11 11232221 2444444 489999776653
Q ss_pred h----HHHHHHHHHHcCCCEEEEecC
Q psy8894 99 G----AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ~----~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
. +..+++.+.+.|++.++.+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 100 DLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred chhHHHHHHHHHHHHcCCCEEEEEec
Confidence 3 455677788889998888776
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0075 Score=52.15 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=56.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.++|+|+|+ |++|+...+.|.+.|++++ .++++. + ..+ +.|++++++|+....++++++..
T Consensus 19 ~~~I~iiG~-G~mG~~la~~l~~~g~~V~-~~~~~~--~-------------~~~--~aD~vi~av~~~~~~~v~~~l~~ 79 (209)
T 2raf_A 19 GMEITIFGK-GNMGQAIGHNFEIAGHEVT-YYGSKD--Q-------------ATT--LGEIVIMAVPYPALAALAKQYAT 79 (209)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTC--C-------------CSS--CCSEEEECSCHHHHHHHHHHTHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEE-EEcCCH--H-------------Hhc--cCCEEEEcCCcHHHHHHHHHHHH
Confidence 568999998 9999999999999999865 677764 2 223 38999999999888888877643
Q ss_pred -cCCCEEEEecCCCC
Q psy8894 110 -AEMPLIVCITEGIP 123 (306)
Q Consensus 110 -~Gi~~vvi~t~Gf~ 123 (306)
..=+.++..+.|++
T Consensus 80 ~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 80 QLKGKIVVDITNPLN 94 (209)
T ss_dssp HHTTSEEEECCCCBC
T ss_pred hcCCCEEEEECCCCC
Confidence 23234555677876
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0066 Score=55.94 Aligned_cols=69 Identities=26% Similarity=0.273 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||... +. +...+.+++++..+ .|++++++|... +..++
T Consensus 123 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~dr~~~-~~--~~~~~~~l~ell~~--aDvV~l~~P~~~~t~~~i 192 (303)
T 1qp8_A 123 QGEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTPK-EG--PWRFTNSLEEALRE--ARAAVCALPLNKHTRGLV 192 (303)
T ss_dssp TTCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSCC-CS--SSCCBSCSHHHHTT--CSEEEECCCCSTTTTTCB
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-cc--CcccCCCHHHHHhh--CCEEEEeCcCchHHHHHh
Confidence 3578999999 9999999999999999976 6777652 22 44456689898876 999999999763 44444
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0054 Score=55.32 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCeeccC------------CHHhhhhc-CCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDLPVFN------------TVKEARDA-TGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gip~y~------------sl~el~~~-~~iDlavi~ 94 (306)
++|+|+|+ |.+|......|.+.|+++. .++++... +.+ .|+.... +.+++.+. .+.|+++++
T Consensus 4 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 81 (316)
T 2ew2_A 4 MKIAIAGA-GAMGSRLGIMLHQGGNDVT-LIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIAL 81 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEEC
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCcEE-EEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEE
Confidence 58999999 9999999999999999865 56654200 111 1322211 23344330 148999999
Q ss_pred cCchhHHHHHHHHHHc-C-CCEEEEecCCCCh
Q psy8894 95 VPPPGAAKAIHEALDA-E-MPLIVCITEGIPQ 124 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e 124 (306)
+|+....++++++... + =+.++.++.|+..
T Consensus 82 v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~ 113 (316)
T 2ew2_A 82 TKAQQLDAMFKAIQPMITEKTYVLCLLNGLGH 113 (316)
T ss_dssp SCHHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred eccccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 9999988888877653 2 2345556778863
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0066 Score=56.77 Aligned_cols=91 Identities=20% Similarity=0.046 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC---CeEEEeeCCCCCCcee--cCeec-cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG---TKVVGGVSPGKGGKTH--LDLPV-FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g---~~vv~~VnP~~~g~~i--~Gip~-y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..+|+|+||+|..|+...+.|.+.+ +++++..+++..|+.+ .|..+ +.+++..+- .++|+++.|+|.....+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~-~~vDvVf~a~g~~~s~~~ 81 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDW-SQVHIALFSAGGELSAKW 81 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCG-GGCSEEEECSCHHHHHHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHh-cCCCEEEECCCchHHHHH
Confidence 4689999999999999999888863 4677555555434422 23221 122221111 149999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCC
Q psy8894 104 IHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf 122 (306)
++.+.+.|++. +..++-|
T Consensus 82 a~~~~~~G~~v-Id~s~~~ 99 (336)
T 2r00_A 82 APIAAEAGVVV-IDNTSHF 99 (336)
T ss_dssp HHHHHHTTCEE-EECSSTT
T ss_pred HHHHHHcCCEE-EEcCCcc
Confidence 99999999974 4355544
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0026 Score=59.86 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~- 104 (306)
+.++|+|||. |++|+...+.++.+|++++ ..||..... ...|...+.+++++..+ .|++++++|.. .+..++
T Consensus 167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~ 242 (347)
T 1mx3_A 167 RGETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLFH--SDCVTLHCGLNEHNHHLIN 242 (347)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHHH--CSEEEECCCCCTTCTTSBS
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhHhhcCCeecCCHHHHHhc--CCEEEEcCCCCHHHHHHhH
Confidence 3578999999 9999999999999999976 577754211 12366656689999876 99999999974 344444
Q ss_pred HHHHH-cCCCEE-EEecCCCChhHHHHHHHHHHHhcCCe
Q psy8894 105 HEALD-AEMPLI-VCITEGIPQLDMVKVKHRLIRQSKSR 141 (306)
Q Consensus 105 ~e~~~-~Gi~~v-vi~t~Gf~e~~~~~~~~~~ar~~gi~ 141 (306)
++.++ ..-..+ ++.+.|-.. +.+++.+ ..++.++.
T Consensus 243 ~~~l~~mk~gailIN~arg~~v-d~~aL~~-aL~~g~i~ 279 (347)
T 1mx3_A 243 DFTVKQMRQGAFLVNTARGGLV-DEKALAQ-ALKEGRIR 279 (347)
T ss_dssp HHHHTTSCTTEEEEECSCTTSB-CHHHHHH-HHHHTSEE
T ss_pred HHHHhcCCCCCEEEECCCChHH-hHHHHHH-HHHhCCCc
Confidence 33333 333444 445555332 2233332 34555554
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=59.65 Aligned_cols=115 Identities=17% Similarity=0.286 Sum_probs=71.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeec--cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPV--FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+.++|+|+|+ |++|+...+.++.+|++++ ..||.....+ ..|..+ +.+++++... .|++++++|.....+.
T Consensus 156 ~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~--aDvVi~~~p~~~i~~~ 231 (300)
T 2rir_A 156 HGSQVAVLGL-GRTGMTIARTFAALGANVK-VGARSSAHLARITEMGLVPFHTDELKEHVKD--IDICINTIPSMILNQT 231 (300)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTCEEEEGGGHHHHSTT--CSEEEECCSSCCBCHH
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHCCCeEEchhhHHHHhhC--CCEEEECCChhhhCHH
Confidence 4689999999 9999999999999999865 6776531011 125443 3577777765 9999999998544321
Q ss_pred HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~ 153 (306)
.-...+.| ..+++++.|-...+. +.+++.|++++ -||..|.+.+
T Consensus 232 ~~~~mk~g-~~lin~a~g~~~~~~-----~~a~~~G~~~i~~pg~~g~v~~ 276 (300)
T 2rir_A 232 VLSSMTPK-TLILDLASRPGGTDF-----KYAEKQGIKALLAPGLPGIVAP 276 (300)
T ss_dssp HHTTSCTT-CEEEECSSTTCSBCH-----HHHHHHTCEEEECCCHHHHHCH
T ss_pred HHHhCCCC-CEEEEEeCCCCCcCH-----HHHHHCCCEEEECCCCCCcHHH
Confidence 11112222 234445544333322 24567788765 5776666644
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0051 Score=56.57 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-------ec----------CeeccCCHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-------HL----------DLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-------i~----------Gip~y~sl~el~~~~~iDlavi 93 (306)
++|+|+|+ |.+|......|.+.|+++. .++++.. +. +. .++++.+.+++.+. .|++++
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~--~DlVil 77 (320)
T 3i83_A 3 LNILVIGT-GAIGSFYGALLAKTGHCVS-VVSRSDY-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK--PDCTLL 77 (320)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHTTCEEE-EECSTTH-HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC--CSEEEE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEE-EEeCChH-HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC--CCEEEE
Confidence 68999999 9999999888888898865 5555421 11 11 12345567776543 899999
Q ss_pred ecCchhHHHHHHHHHHc-C-CCEEEEecCCCChh
Q psy8894 94 YVPPPGAAKAIHEALDA-E-MPLIVCITEGIPQL 125 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf~e~ 125 (306)
+||+....++++++... + =..++.++.|+...
T Consensus 78 avK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~ 111 (320)
T 3i83_A 78 CIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIE 111 (320)
T ss_dssp CCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCS
T ss_pred ecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChH
Confidence 99999999888887643 2 13566688999643
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.016 Score=49.51 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCChHHHHHHH-HcCCeEEEee-CCC-CCCce----ecCeecc-------CCHHhhhhcCCCcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI-EYGTKVVGGV-SPG-KGGKT----HLDLPVF-------NTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~V-nP~-~~g~~----i~Gip~y-------~sl~el~~~~~iDlavi~vp 96 (306)
++|.|.|++|..|+...+.|. +.|++++... ++. .. ++ ..++..+ .++.++.+ ++|++|.+..
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~ag 82 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-PPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGAM 82 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-CHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-hhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcCC
Confidence 569999999999999999998 7899976432 222 10 11 1122222 22444444 4999998775
Q ss_pred c---hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 P---PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~---~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
. . +..+++.+.+.|++.++.+++
T Consensus 83 ~~n~~-~~~~~~~~~~~~~~~iv~iSs 108 (221)
T 3r6d_A 83 ESGSD-MASIVKALSRXNIRRVIGVSM 108 (221)
T ss_dssp CCHHH-HHHHHHHHHHTTCCEEEEEEE
T ss_pred CCChh-HHHHHHHHHhcCCCeEEEEee
Confidence 4 3 677788888899988887665
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0082 Score=55.37 Aligned_cols=89 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCe--------------eccCCHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDL--------------PVFNTVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gi--------------p~y~sl~el~~~~~iDla 91 (306)
+++|+|+|+ |.+|......|.+.|+++. .++++... +.+ .++ ..+.+++++... .|++
T Consensus 4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~v 79 (359)
T 1bg6_A 4 SKTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD--ADVI 79 (359)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT--CSEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc--CCEE
Confidence 468999999 9999998888988899864 66654200 011 122 245678776554 9999
Q ss_pred EEecCchhHHHHHHHHHHc-CCCEEEEecCCC
Q psy8894 92 VIYVPPPGAAKAIHEALDA-EMPLIVCITEGI 122 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~-Gi~~vvi~t~Gf 122 (306)
++++|+....++++++... .-..+++...|.
T Consensus 80 i~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~~ 111 (359)
T 1bg6_A 80 LIVVPAIHHASIAANIASYISEGQLIILNPGA 111 (359)
T ss_dssp EECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEeCCchHHHHHHHHHHHhCCCCCEEEEcCCC
Confidence 9999999999988877543 223334434553
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0053 Score=58.70 Aligned_cols=94 Identities=15% Similarity=0.092 Sum_probs=62.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcC--------Ce-EEEeeCCCCCCc-------------------e-ecCeecc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYG--------TK-VVGGVSPGKGGK-------------------T-HLDLPVF 76 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g--------~~-vv~~VnP~~~g~-------------------~-i~Gip~y 76 (306)
...+|.||+|+|+ |..|++....+.+.| .+ .+|.-++....+ . -..+...
T Consensus 30 ~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 30 AAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp ---CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred ccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4677999999999 999998877665532 12 334433221000 0 1245566
Q ss_pred CCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHc---CCCEEEEecCCCC
Q psy8894 77 NTVKEARDATGAEATVIYVPPPGAAKAIHEALDA---EMPLIVCITEGIP 123 (306)
Q Consensus 77 ~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~---Gi~~vvi~t~Gf~ 123 (306)
.++.++.+. .|++|+++|.....+++++.... +.. ++..+-|+.
T Consensus 109 ~dl~~al~~--ad~ii~avPs~~~r~~l~~l~~~~~~~~~-iv~~~KGie 155 (391)
T 4fgw_A 109 PDLIDSVKD--VDIIVFNIPHQFLPRICSQLKGHVDSHVR-AISCLKGFE 155 (391)
T ss_dssp SCHHHHHTT--CSEEEECSCGGGHHHHHHHHTTTSCTTCE-EEECCCSCE
T ss_pred CCHHHHHhc--CCEEEEECChhhhHHHHHHhccccCCCce-eEEeccccc
Confidence 778887765 99999999999999999998653 333 455678983
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0056 Score=55.75 Aligned_cols=92 Identities=13% Similarity=-0.002 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------------------------ecCeeccC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------------------------HLDLPVFN 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------------------------i~Gip~y~ 77 (306)
.++|+|+|+ |.||......+.+.|++++ .+|++...-+ ...+....
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 468999999 9999988888888899875 6676531000 01244556
Q ss_pred CHHhhhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChh
Q psy8894 78 TVKEARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQL 125 (306)
Q Consensus 78 sl~el~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~ 125 (306)
++++.... .|++|+++|... ..++++++.+. .-+.+++ .|++++.+
T Consensus 93 ~~~~~~~~--aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~ 142 (302)
T 1f0y_A 93 DAASVVHS--TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT 142 (302)
T ss_dssp CHHHHTTS--CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH
T ss_pred CHHHhhcC--CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH
Confidence 77755554 899999999864 34555655432 2233443 46677644
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.017 Score=51.69 Aligned_cols=88 Identities=9% Similarity=0.041 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC----CCceecCe----eccCCHHhhhhcCCCcEEEEecCch---
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK----GGKTHLDL----PVFNTVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~----~g~~i~Gi----p~y~sl~el~~~~~iDlavi~vp~~--- 98 (306)
.++|.|.|++|..|+...+.|.+.|+++++...... ....+... .+..-..|+. ++|+++-+....
T Consensus 7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~---~~d~vi~~a~~~~~~ 83 (321)
T 3vps_A 7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS---DVRLVYHLASHKSVP 83 (321)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT---TEEEEEECCCCCCHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc---cCCEEEECCccCChH
Confidence 578999999999999999999999999875432211 00111111 0111123333 389888654321
Q ss_pred --------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 84 ~~~~~~~~~~~n~~~~~~ll~a~~~~~v~~~v~~SS 119 (321)
T 3vps_A 84 RSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGST 119 (321)
T ss_dssp HHTTSTTTTHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecC
Confidence 2356888888899988886664
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.022 Score=44.65 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCeecc-C---CHHhhhh--cCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDLPVF-N---TVKEARD--ATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gip~y-~---sl~el~~--~~~iDlavi~vp~~~~ 100 (306)
++|+|+|+ |.+|+...+.|.+.|++++ .++++... +.+ .|+.++ . +.+.+.+ -.+.|++++++|....
T Consensus 5 m~i~IiG~-G~iG~~~a~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 82 (140)
T 1lss_A 5 MYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV 82 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH
Confidence 58999999 9999999999999998865 55554210 111 144332 2 2222211 1248999999998766
Q ss_pred HHHH-HHHHHcCCCEEEEecCCC
Q psy8894 101 AKAI-HEALDAEMPLIVCITEGI 122 (306)
Q Consensus 101 ~~~~-~e~~~~Gi~~vvi~t~Gf 122 (306)
...+ +.+...+.+.++..+.+.
T Consensus 83 ~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 83 NLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp HHHHHHHHHHTTCCCEEEECSST
T ss_pred HHHHHHHHHHcCCCEEEEEecCH
Confidence 5544 444456777777666554
|
| >2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.036 Score=52.79 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=80.7
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEee-CC----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEI-GG---------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~-~~---------- 235 (306)
..|+|++++-+|+++...++.....|.-...++-+|+.+ ..-.+.+.++.+..||++++|++.+=+ +-
T Consensus 255 l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a-~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~gii 333 (388)
T 2nu8_B 255 LDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA-TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGII 333 (388)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCC-CHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCC-CHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHHHH
Confidence 579999999999999999999999998888899998874 223456677788899999999997621 11
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEe--CCHhHHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT--RSPAQMGNELL 297 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~--~~~~el~~~~~ 297 (306)
...+||||+-..|.. .+.-...|++.|+-.. +|+++-...+.
T Consensus 334 ~a~~~~~~~~pivvrl~G~n--------------------~~~g~~~l~~~g~~~~~~~~~~~aa~~~v 382 (388)
T 2nu8_B 334 GAVAEVGVNVPVVVRLEGNN--------------------AELGAKKLADSGLNIIAAKGLTDAAQQVV 382 (388)
T ss_dssp HHHHHHTCCSCEEEEEESTT--------------------HHHHHHHHHTTCSSEEECSSHHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEeCCCC--------------------HHHHHHHHHHCCCceecCCCHHHHHHHHH
Confidence 126899999554433 2333578888886555 66666555443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.011 Score=51.23 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee--cCe-ecc-----CCHHhhhhcCCCcEEEEecCch--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH--LDL-PVF-----NTVKEARDATGAEATVIYVPPP-- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i--~Gi-p~y-----~sl~el~~~~~iDlavi~vp~~-- 98 (306)
.++|.|.|++|..|+...+.|.+.|++++.. ..+.... +. .++ ..+ .++.+... ++|++|-+....
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~--~~D~vi~~ag~~~~ 97 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAM-VRNEEQGPELRERGASDIVVANLEEDFSHAFA--SIDAVVFAAGSGPH 97 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ESSGGGHHHHHHTTCSEEEECCTTSCCGGGGT--TCSEEEECCCCCTT
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEE-ECChHHHHHHHhCCCceEEEcccHHHHHHHHc--CCCEEEECCCCCCC
Confidence 5789999999999999999999999997644 3221000 10 122 222 33444444 499999876532
Q ss_pred ------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 98 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 131 (236)
T 3e8x_A 98 TGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSS 131 (236)
T ss_dssp SCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCccccchhhHHHHHHHHHHHHHcCCCEEEEEec
Confidence 2566788888899998887665
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0026 Score=58.01 Aligned_cols=115 Identities=14% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeec--cCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPV--FNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~--y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
+.++|+|+|+ |++|+...+.++.+|++++ ..||.....+ ..|... +.+++++... .|++++++|.....+.
T Consensus 154 ~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~--aDvVi~~~p~~~i~~~ 229 (293)
T 3d4o_A 154 HGANVAVLGL-GRVGMSVARKFAALGAKVK-VGARESDLLARIAEMGMEPFHISKAAQELRD--VDVCINTIPALVVTAN 229 (293)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSHHHHHHHHHTTSEEEEGGGHHHHTTT--CSEEEECCSSCCBCHH
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHHCCCeecChhhHHHHhcC--CCEEEECCChHHhCHH
Confidence 4689999998 9999999999999999865 6776531011 124443 3567777665 9999999997554322
Q ss_pred HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE-ccCCCceecC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI-GPNCPGIIAP 153 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii-GPNc~Gi~~~ 153 (306)
.-+..+.| ..+++++.|-.+.+. +.+++.|++++ -||..|.+.|
T Consensus 230 ~l~~mk~~-~~lin~ar~~~~~~~-----~~a~~~Gv~~~~~~~l~~~v~p 274 (293)
T 3d4o_A 230 VLAEMPSH-TFVIDLASKPGGTDF-----RYAEKRGIKALLVPGLPGIVAP 274 (293)
T ss_dssp HHHHSCTT-CEEEECSSTTCSBCH-----HHHHHHTCEEEECCCHHHHHCH
T ss_pred HHHhcCCC-CEEEEecCCCCCCCH-----HHHHHCCCEEEECCCCCcccCH
Confidence 11222223 234444444333332 24577788775 5676666644
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.034 Score=45.22 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=57.9
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeecc-CC---HHhhhh--cCCCcEEE
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVF-NT---VKEARD--ATGAEATV 92 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y-~s---l~el~~--~~~iDlav 92 (306)
|+.... .++|+|+|+ |.+|+...+.|.+.|++++ .++++... +. -.|..++ .+ .+.+.+ -.+.|+++
T Consensus 13 ~~~~~~-~~~v~IiG~-G~iG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 13 MSKKQK-SKYIVIFGC-GRLGSLIANLASSSGHSVV-VVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp ----CC-CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred hhcccC-CCcEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 443333 468999998 9999999999999999865 55443210 11 1243322 22 222211 01489999
Q ss_pred EecCchhHHHHHHHHHH--cCCCEEEEecCCC
Q psy8894 93 IYVPPPGAAKAIHEALD--AEMPLIVCITEGI 122 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~--~Gi~~vvi~t~Gf 122 (306)
++++.......+.++++ .+...++..+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 90 AFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp ECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred EEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 99998777666555554 4677666655553
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=96.26 E-value=0.012 Score=55.29 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHH-HcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAI-EYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
.++|+|||. |++|+...+.+. .+|++++ ..|+.....+ ..|+....+++++..+ .|++++++|... ...++
T Consensus 163 g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVil~vp~~~~t~~li 238 (348)
T 2w2k_A 163 GHVLGAVGL-GAIQKEIARKAVHGLGMKLV-YYDVAPADAETEKALGAERVDSLEELARR--SDCVSVSVPYMKLTHHLI 238 (348)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHHH--CSEEEECCCCSGGGTTCB
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHhcCCEEE-EECCCCcchhhHhhcCcEEeCCHHHHhcc--CCEEEEeCCCChHHHHHh
Confidence 478999999 999999999999 8999976 6777542111 1266555689888776 999999999854 33333
Q ss_pred --HHHHHcCCCEEE-EecCC
Q psy8894 105 --HEALDAEMPLIV-CITEG 121 (306)
Q Consensus 105 --~e~~~~Gi~~vv-i~t~G 121 (306)
+......-..++ +.+.|
T Consensus 239 ~~~~l~~mk~gailin~srg 258 (348)
T 2w2k_A 239 DEAFFAAMKPGSRIVNTARG 258 (348)
T ss_dssp CHHHHHHSCTTEEEEECSCG
T ss_pred hHHHHhcCCCCCEEEECCCC
Confidence 122233444444 34444
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=55.62 Aligned_cols=89 Identities=20% Similarity=0.094 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH- 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~- 105 (306)
.++|+|+|+ |++|+...+.+.+.|++++ .++++... +. -.|+... +++++.+. .|++++++|+....++++
T Consensus 28 ~~~I~iiG~-G~~G~~la~~l~~~g~~V~-~~~r~~~~~~~~~~~g~~~~-~~~~~~~~--~DvVi~av~~~~~~~v~~l 102 (215)
T 2vns_A 28 APKVGILGS-GDFARSLATRLVGSGFKVV-VGSRNPKRTARLFPSAAQVT-FQEEAVSS--PEVIFVAVFREHYSSLCSL 102 (215)
T ss_dssp -CCEEEECC-SHHHHHHHHHHHHTTCCEE-EEESSHHHHHHHSBTTSEEE-EHHHHTTS--CSEEEECSCGGGSGGGGGG
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCcee-cHHHHHhC--CCEEEECCChHHHHHHHHH
Confidence 468999996 9999999999999999865 56654310 11 1255554 67776654 999999999876655543
Q ss_pred -HHHHcCCCEEEEecCCCChh
Q psy8894 106 -EALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 106 -e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
... .+ +.++.++.|.+.+
T Consensus 103 ~~~~-~~-~~vv~~s~g~~~~ 121 (215)
T 2vns_A 103 SDQL-AG-KILVDVSNPTEQE 121 (215)
T ss_dssp HHHH-TT-CEEEECCCCCHHH
T ss_pred HHhc-CC-CEEEEeCCCcccc
Confidence 222 23 4556678887543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.014 Score=51.89 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--c---Ce----e-ccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--L---DL----P-VFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~---Gi----p-~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|+ |.+|......|.+.|+++. .++++... +.+ . |. . ...+. +..+. .|++++++|+..
T Consensus 1 m~i~iiG~-G~~G~~~a~~l~~~g~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~--~d~vi~~v~~~~ 75 (291)
T 1ks9_A 1 MKITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDP-DFLAT--SDLLLVTLKAWQ 75 (291)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCH-HHHHT--CSEEEECSCGGG
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCCEE-EEEcCccceeeEEEEcCCCceeeeeeeecCc-cccCC--CCEEEEEecHHh
Confidence 37999999 9999999999999999865 55554311 111 1 21 1 12333 33333 899999999999
Q ss_pred HHHHHHHHHHc-C-CCEEEEecCCCCh
Q psy8894 100 AAKAIHEALDA-E-MPLIVCITEGIPQ 124 (306)
Q Consensus 100 ~~~~~~e~~~~-G-i~~vvi~t~Gf~e 124 (306)
+.++++++... + =..++.++.|+..
T Consensus 76 ~~~v~~~l~~~l~~~~~vv~~~~g~~~ 102 (291)
T 1ks9_A 76 VSDAVKSLASTLPVTTPILLIHNGMGT 102 (291)
T ss_dssp HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence 99988877653 1 1235556888854
|
| >2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.04 Score=52.62 Aligned_cols=109 Identities=13% Similarity=0.158 Sum_probs=80.5
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEe-eCC----------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGE-IGG---------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E-~~~---------- 235 (306)
..|+|++++-+|+++...++....+|.-...++-+|+.+ ..-.+.+.++.+..||++++|++-+= ++-
T Consensus 262 l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a-~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii 340 (395)
T 2fp4_B 262 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV-KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGIT 340 (395)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSC-CHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHH
T ss_pred cCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCC-CHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHH
Confidence 479999999999999999999999998888999999874 22345667888889999999998542 221
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEe--CCHhHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVT--RSPAQMGNEL 296 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~--~~~~el~~~~ 296 (306)
...+||||+-..|.. .+.-.+.|++.|+-.. +++++-...+
T Consensus 341 ~a~~~~~~~~Pivvrl~G~n--------------------~~~g~~~L~~~gl~~~~~~~~~~Aa~~~ 388 (395)
T 2fp4_B 341 KACRELELKVPLVVRLEGTN--------------------VHEAQNILTNSGLPITSAVDLEDAAKKA 388 (395)
T ss_dssp HHHHHHTCCSCEEEEEEETT--------------------HHHHHHHHHHTCSCCEECSSHHHHHHHH
T ss_pred HHHHhcCCCCeEEEEcCCCC--------------------HHHHHHHHHHCCCceEeCCCHHHHHHHH
Confidence 126799999665543 2223678888886544 6666555444
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0071 Score=56.82 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-------CeEEEeeCCCCC------Ccee----------------cCeeccCCHHh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-------TKVVGGVSPGKG------GKTH----------------LDLPVFNTVKE 81 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-------~~vv~~VnP~~~------g~~i----------------~Gip~y~sl~e 81 (306)
++|+|+|+ |.+|......|.+.| +++. .++++.. -+.+ .++....++++
T Consensus 22 ~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~-~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 22 LKISILGS-GNWASAISKVVGTNAKNNYLFENEVR-MWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp BCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEE-EECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEE-EEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 57999999 999999888888878 7754 5554321 0000 13455567777
Q ss_pred hhhcCCCcEEEEecCchhHHHHHHHHHH----c-CC-CEEEEecCCCCh
Q psy8894 82 ARDATGAEATVIYVPPPGAAKAIHEALD----A-EM-PLIVCITEGIPQ 124 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~~~~~~~e~~~----~-Gi-~~vvi~t~Gf~e 124 (306)
+... .|++++++|+..+.++++++.. . +- +.++.++.|+..
T Consensus 100 a~~~--aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~ 146 (375)
T 1yj8_A 100 VIND--ADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIV 146 (375)
T ss_dssp HHTT--CSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred HHcC--CCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence 6554 8999999999988888887654 2 11 245556678764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.022 Score=52.14 Aligned_cols=88 Identities=10% Similarity=0.069 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--cC--------------eeccCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--LD--------------LPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--~G--------------ip~y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......|.+.|.++. .++++.. +.+ .| ++++.+.+++. +.|+++++
T Consensus 3 mkI~IiGa-GaiG~~~a~~L~~~g~~V~-~~~r~~~-~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~~~---~~D~vila 76 (312)
T 3hn2_A 3 LRIAIVGA-GALGLYYGALLQRSGEDVH-FLLRRDY-EAIAGNGLKVFSINGDFTLPHVKGYRAPEEIG---PMDLVLVG 76 (312)
T ss_dssp -CEEEECC-STTHHHHHHHHHHTSCCEE-EECSTTH-HHHHHTCEEEEETTCCEEESCCCEESCHHHHC---CCSEEEEC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCeEE-EEEcCcH-HHHHhCCCEEEcCCCeEEEeeceeecCHHHcC---CCCEEEEe
Confidence 57999999 9999999888988898865 5554321 111 11 22345566543 38999999
Q ss_pred cCchhHHHHHHHHHHc-CC-CEEEEecCCCCh
Q psy8894 95 VPPPGAAKAIHEALDA-EM-PLIVCITEGIPQ 124 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e 124 (306)
||+....++++++... +- ..++.++.|+..
T Consensus 77 vk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~ 108 (312)
T 3hn2_A 77 LKTFANSRYEELIRPLVEEGTQILTLQNGLGN 108 (312)
T ss_dssp CCGGGGGGHHHHHGGGCCTTCEEEECCSSSSH
T ss_pred cCCCCcHHHHHHHHhhcCCCCEEEEecCCCCc
Confidence 9999999999888653 22 356667889863
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0045 Score=58.43 Aligned_cols=90 Identities=18% Similarity=0.138 Sum_probs=63.5
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC---------ce-----------------ecC--eeccC
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG---------KT-----------------HLD--LPVFN 77 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g---------~~-----------------i~G--ip~y~ 77 (306)
.....+|+|+|+ |+.|+...+.+.++ ++++++.-+|...- +. +.| ++++.
T Consensus 14 ~~~~ikVgI~G~-G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~ 92 (354)
T 3cps_A 14 LYFQGTLGINGF-GRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQ 92 (354)
T ss_dssp ----CEEEEECC-SHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEEC
T ss_pred cCcceEEEEECC-CHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEe
Confidence 334568999999 99999999988887 89988665543210 00 112 33453
Q ss_pred --CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 --TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 --sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.++++- +.++|+++.++|.....+.+...++.|+|.+||
T Consensus 93 ~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVI 135 (354)
T 3cps_A 93 AKDPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVII 135 (354)
T ss_dssp CSCGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred cCChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEE
Confidence 4566641 124999999999999999999999999998775
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.011 Score=55.53 Aligned_cols=84 Identities=13% Similarity=0.125 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH--H
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI--H 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~--~ 105 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||.....+ ..|...+.+++++..+ .|++++++|. +.+..++ +
T Consensus 173 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~g~~~~~~l~ell~~--sDvV~l~~Plt~~T~~li~~~ 248 (345)
T 4g2n_A 173 GRRLGIFGM-GRIGRAIATRARGFGLAIH-YHNRTRLSHALEEGAIYHDTLDSLLGA--SDIFLIAAPGRPELKGFLDHD 248 (345)
T ss_dssp TCEEEEESC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHTTCEECSSHHHHHHT--CSEEEECSCCCGGGTTCBCHH
T ss_pred CCEEEEEEe-ChhHHHHHHHHHHCCCEEE-EECCCCcchhhhcCCeEeCCHHHHHhh--CCEEEEecCCCHHHHHHhCHH
Confidence 578999999 9999999999999999976 6777641111 2266555689999886 9999999994 3444443 2
Q ss_pred HHHHcCCCEEEE
Q psy8894 106 EALDAEMPLIVC 117 (306)
Q Consensus 106 e~~~~Gi~~vvi 117 (306)
.....+-..+++
T Consensus 249 ~l~~mk~gailI 260 (345)
T 4g2n_A 249 RIAKIPEGAVVI 260 (345)
T ss_dssp HHHHSCTTEEEE
T ss_pred HHhhCCCCcEEE
Confidence 333455555554
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.014 Score=48.70 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCce--ecCeecc-------CCHHhhhhcCCCcEEEEecCch--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGKT--HLDLPVF-------NTVKEARDATGAEATVIYVPPP-- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~~--i~Gip~y-------~sl~el~~~~~iDlavi~vp~~-- 98 (306)
++|.|+|++|..|+...+.|.+.|++++... ++... .+ ..++..+ .++.++.+. +|+++.+....
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~~~~ 80 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-PSEGPRPAHVVVGDVLQAADVDKTVAG--QDAVIVLLGTRND 80 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-CSSSCCCSEEEESCTTSHHHHHHHHTT--CSEEEECCCCTTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhc-ccccCCceEEEEecCCCHHHHHHHHcC--CCEEEECccCCCC
Confidence 6899999999999999999999999976442 22110 11 1122222 124444443 89999876543
Q ss_pred ---------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ---------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ---------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+++.++.+++
T Consensus 81 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss 111 (206)
T 1hdo_A 81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (206)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CCccchHHHHHHHHHHHHHHhCCCeEEEEee
Confidence 3667788888889988886665
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.015 Score=55.58 Aligned_cols=113 Identities=12% Similarity=0.114 Sum_probs=69.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-C--eEEEeeCCCCCC-ce----ec-----Ceec-------cCCHHhhhhcCCCcE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-T--KVVGGVSPGKGG-KT----HL-----DLPV-------FNTVKEARDATGAEA 90 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~--~vv~~VnP~~~g-~~----i~-----Gip~-------y~sl~el~~~~~iDl 90 (306)
++|+|+|+ |..|+.+.+.|.+.| . ++ ...+.+... ++ +. .+.. +.+++++.+..++|+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V-~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHI-TLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEE-EEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEE-EEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 58999999 899999999998886 2 54 354443200 00 10 1111 234555554334899
Q ss_pred EEEecCchhHHHHHHHHHHcCCCEEEEecCCCChh-------HHHHHHHHHHHhcCCe-EEccCC
Q psy8894 91 TVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQL-------DMVKVKHRLIRQSKSR-LIGPNC 147 (306)
Q Consensus 91 avi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~-------~~~~~~~~~ar~~gi~-iiGPNc 147 (306)
+|.++|+.....+++.|++.|++.+- ++++... .....+.+.+++.|+. +.|++|
T Consensus 80 Vin~ag~~~~~~v~~a~l~~g~~vvD--~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G~ 142 (405)
T 4ina_A 80 VLNIALPYQDLTIMEACLRTGVPYLD--TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSGF 142 (405)
T ss_dssp EEECSCGGGHHHHHHHHHHHTCCEEE--SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCBT
T ss_pred EEECCCcccChHHHHHHHHhCCCEEE--ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCCC
Confidence 99999999999999999999999653 3333211 1111222356777764 455554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.025 Score=55.01 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=45.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-ce----------------e-----cCeeccCCHHhhhhcC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-KT----------------H-----LDLPVFNTVKEARDAT 86 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~~----------------i-----~Gip~y~sl~el~~~~ 86 (306)
++|+|+|+ |.+|......|.+. |++++ .+|.+... +. + .++....++++....
T Consensus 6 mkI~VIG~-G~mG~~lA~~La~~g~G~~V~-~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~- 82 (467)
T 2q3e_A 6 KKICCIGA-GYVGGPTCSVIAHMCPEIRVT-VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE- 82 (467)
T ss_dssp CEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc-
Confidence 68999998 99999998888887 78865 55554200 01 0 245555677766655
Q ss_pred CCcEEEEecCchh
Q psy8894 87 GAEATVIYVPPPG 99 (306)
Q Consensus 87 ~iDlavi~vp~~~ 99 (306)
.|++++++|...
T Consensus 83 -aDvViiaVptp~ 94 (467)
T 2q3e_A 83 -ADLVFISVNTPT 94 (467)
T ss_dssp -CSEEEECCCCCB
T ss_pred -CCEEEEEcCCch
Confidence 899999987544
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.016 Score=55.52 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~--~ 105 (306)
+-++++|+|. |++|+...+.++.+|++++ ..||... ....+...+.+++++... .|++++++|.. .+..++ +
T Consensus 144 ~gktlGiIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~ 218 (404)
T 1sc6_A 144 RGKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAK 218 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHH
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EEcCCch-hccCCceecCCHHHHHhc--CCEEEEccCCChHHHHHhhHH
Confidence 3578999999 9999999999999999976 6787541 223345556689999887 99999999975 333333 2
Q ss_pred HHHHcCCCEEE-EecCCC
Q psy8894 106 EALDAEMPLIV-CITEGI 122 (306)
Q Consensus 106 e~~~~Gi~~vv-i~t~Gf 122 (306)
.+....-..++ +.+.|-
T Consensus 219 ~l~~mk~ga~lIN~aRg~ 236 (404)
T 1sc6_A 219 EISLMKPGSLLINASRGT 236 (404)
T ss_dssp HHHHSCTTEEEEECSCSS
T ss_pred HHhhcCCCeEEEECCCCh
Confidence 23334444444 455553
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0062 Score=56.51 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=53.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-CCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-GKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..|| ..... ...|+....+++++... .|++++++|... +..++
T Consensus 145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvVil~~p~~~~t~~~i 220 (320)
T 1gdh_A 145 DNKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLSV--SQFFSLNAPSTPETRYFF 220 (320)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcChhhhhhcCcEEcCCHHHHHhh--CCEEEEeccCchHHHhhc
Confidence 3578999999 9999999999999999976 7787 54111 11366555589998876 999999999642 34444
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0053 Score=57.88 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC------CeEEEeeCCCCCCceec-------C---eeccC-CHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG------TKVVGGVSPGKGGKTHL-------D---LPVFN-TVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g------~~vv~~VnP~~~g~~i~-------G---ip~y~-sl~el~~~~~iDlavi 93 (306)
.+|+|+||+|..|+...+.|.+++ ++++.....+..|+.+. + +.+.+ +.+++. ++|+++.
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~---~~DvVf~ 86 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLG---GHDAVFL 86 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHT---TCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhc---CCCEEEE
Confidence 689999999999999999988876 46665554443333221 1 12111 122222 4999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
++|...+.+.++.+ +.|++. +..|+-|.
T Consensus 87 alg~~~s~~~~~~~-~~G~~v-IDlSa~~R 114 (352)
T 2nqt_A 87 ALPHGHSAVLAQQL-SPETLI-IDCGADFR 114 (352)
T ss_dssp CCTTSCCHHHHHHS-CTTSEE-EECSSTTT
T ss_pred CCCCcchHHHHHHH-hCCCEE-EEECCCcc
Confidence 99999999999999 999874 44677665
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.0011 Score=57.53 Aligned_cols=90 Identities=17% Similarity=0.104 Sum_probs=59.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
...++|+|+|+ |++|+...+.|.+.|+++. .++++...+. ..|+... +++++.+. .|++++++|+..+.+++
T Consensus 17 ~~~~~I~iIG~-G~mG~~la~~L~~~G~~V~-~~~r~~~~~~~~~~g~~~~-~~~~~~~~--aDvVilav~~~~~~~v~- 90 (201)
T 2yjz_A 17 EKQGVVCIFGT-GDFGKSLGLKMLQCGYSVV-FGSRNPQVSSLLPRGAEVL-CYSEAASR--SDVIVLAVHREHYDFLA- 90 (201)
Confidence 34568999998 9999999999988888854 5565431111 1255544 66666654 89999999998776665
Q ss_pred HHHHcCC-CEEEEecCCCC
Q psy8894 106 EALDAEM-PLIVCITEGIP 123 (306)
Q Consensus 106 e~~~~Gi-~~vvi~t~Gf~ 123 (306)
+.....- +.++.++.|++
T Consensus 91 ~l~~~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 91 ELADSLKGRVLIDVSNNQK 109 (201)
Confidence 3222111 23455677875
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.018 Score=45.28 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCee-ccC---CHHhhhh--cCCCcEEEEecCch--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLP-VFN---TVKEARD--ATGAEATVIYVPPP-- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip-~y~---sl~el~~--~~~iDlavi~vp~~-- 98 (306)
.++|+|+|+ |..|+...+.+.+.|++++ .++++... +. ..|.. ++. +.+.+.+ -.++|+++++++..
T Consensus 6 ~~~v~I~G~-G~iG~~~a~~l~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 6 NKQFAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 357999999 9999999999999998855 45443200 00 11222 222 2222221 12489999999864
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
....+++.+.+.|++.++..+.+. ...+ ..++.|. .++.|..
T Consensus 84 ~~~~~~~~~~~~~~~~ii~~~~~~---~~~~----~l~~~g~~~vi~p~~ 126 (144)
T 2hmt_A 84 ASTLTTLLLKELDIPNIWVKAQNY---YHHK----VLEKIGADRIIHPEK 126 (144)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCSH---HHHH----HHHHHTCSEEECHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCH---HHHH----HHHHcCCCEEECccH
Confidence 345566777788888776655442 1112 2344665 5666653
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.041 Score=50.84 Aligned_cols=78 Identities=10% Similarity=0.007 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC-------------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP------------- 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp------------- 96 (306)
++|.|.|++|-.|+...+.|.+.|+ +++ .++... -..++.++.+. +|+++-+..
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~-~~d~~~---------d~~~l~~~~~~--~d~Vih~a~~~~~~~~~~~~~~ 68 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIF-EVHRQT---------KEEELESALLK--ADFIVHLAGVNRPEHDKEFSLG 68 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEE-ECCTTC---------CHHHHHHHHHH--CSEEEECCCSBCTTCSTTCSSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEE-EECCCC---------CHHHHHHHhcc--CCEEEECCcCCCCCCHHHHHHH
Confidence 4799999999999999999999998 776 455421 12235566555 899887642
Q ss_pred -chhHHHHHHHHHHcCCC-EEEEecC
Q psy8894 97 -PPGAAKAIHEALDAEMP-LIVCITE 120 (306)
Q Consensus 97 -~~~~~~~~~e~~~~Gi~-~vvi~t~ 120 (306)
-..+..+++.|.+.|++ .++.+++
T Consensus 69 n~~~~~~l~~a~~~~~~~~~~v~~Ss 94 (369)
T 3st7_A 69 NVSYLDHVLDILTRNTKKPAILLSSS 94 (369)
T ss_dssp CCBHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCc
Confidence 23356688888889987 6665554
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.018 Score=54.50 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=71.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEe---------------eCCCCCCceecCeeccC-----------CHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGG---------------VSPGKGGKTHLDLPVFN-----------TVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~---------------VnP~~~g~~i~Gip~y~-----------sl~el~ 83 (306)
++|+|+|++|..|+...+.+.++ .|++++. .+|+. -.+.+-..|. .+.++.
T Consensus 4 k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~~--v~v~~~~~~~~~l~~~~~G~~~l~el~ 81 (376)
T 3a06_A 4 RTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVKN--VAITGDVEFEDSSINVWKGSHSIEEML 81 (376)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCCE--EEECSSCCCCCSSSEEEESTTHHHHHH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCCE--EEEccHHHHHHHHHHHccCHHHHHHHh
Confidence 78999999999999888888776 6887765 22322 0111112221 124554
Q ss_pred hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
...++|+++.+++......-...++++|.+. . ++.. |.- .-++..++++++|.+++
T Consensus 82 ~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~v-a-LANK--EsLV~aG~li~~~a~~~g~~ll 139 (376)
T 3a06_A 82 EALKPDITMVAVSGFSGLRAVLASLEHSKRV-C-LANK--ESLVCGGFLVKKKLKEKGTELI 139 (376)
T ss_dssp HHHCCSEEEECCCSTTHHHHHHHHHHHCSEE-E-ECCS--HHHHHHHHHHHHHHHHHCCEEE
T ss_pred cCCCCCEEEEEeeCHHHHHHHHHHHHCCCEE-E-EeCh--HHHHhhHHHHHHHHHHcCCEEE
Confidence 3224999999999999999999999999664 3 3544 321 12334457888888775
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.043 Score=48.71 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.++|+|||+ |++|....+.|.+.|++++ .++.. +++. . .| ++++|.....++++++..
T Consensus 6 ~mkI~IIG~-G~~G~sLA~~L~~~G~~V~-~~~~~---------------~~~~-~--aD--ilavP~~ai~~vl~~l~~ 63 (232)
T 3dfu_A 6 RLRVGIFDD-GSSTVNMAEKLDSVGHYVT-VLHAP---------------EDIR-D--FE--LVVIDAHGVEGYVEKLSA 63 (232)
T ss_dssp CCEEEEECC-SCCCSCHHHHHHHTTCEEE-ECSSG---------------GGGG-G--CS--EEEECSSCHHHHHHHHHT
T ss_pred CcEEEEEee-CHHHHHHHHHHHHCCCEEE-EecCH---------------HHhc-c--CC--EEEEcHHHHHHHHHHHHH
Confidence 358999999 9999999999999999876 45541 3343 2 78 999999999999988876
Q ss_pred c-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 110 A-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 110 ~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
. .-..+++-++|-...+..+ . +++.|.+++|
T Consensus 64 ~l~~g~ivvd~sgs~~~~vl~---~-~~~~g~~fvg 95 (232)
T 3dfu_A 64 FARRGQMFLHTSLTHGITVMD---P-LETSGGIVMS 95 (232)
T ss_dssp TCCTTCEEEECCSSCCGGGGH---H-HHHTTCEEEE
T ss_pred hcCCCCEEEEECCcCHHHHHH---H-HHhCCCcEEE
Confidence 4 3344554445543322111 1 2355666664
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.031 Score=54.21 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCcee----------------------cCeeccCCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKTH----------------------LDLPVFNTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~i----------------------~Gip~y~sl~el~~~~ 86 (306)
..+|+|+|. |.+|......|.+.|+++++. +|+... +.+ ..+....++++..+.
T Consensus 8 ~~~~~vIGl-G~vG~~~A~~La~~G~~V~~~D~~~~kv-~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~- 84 (446)
T 4a7p_A 8 SVRIAMIGT-GYVGLVSGACFSDFGHEVVCVDKDARKI-ELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD- 84 (446)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTH-HHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT-
T ss_pred ceEEEEEcC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc-
Confidence 468999999 999998888999999997632 444421 111 113445567666654
Q ss_pred CCcEEEEecCch-----------hHHHHHHHHHHc-CCCEEEEecCCCChhHHHHHH
Q psy8894 87 GAEATVIYVPPP-----------GAAKAIHEALDA-EMPLIVCITEGIPQLDMVKVK 131 (306)
Q Consensus 87 ~iDlavi~vp~~-----------~~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~ 131 (306)
.|++++++|.. .+.++++...+. .-..+++..++++....+++.
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~ 140 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVE 140 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHH
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHH
Confidence 89999997654 377777776653 233445556666654444443
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.011 Score=55.09 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~ 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..|+..... .......+.+++++..+ .|++++++|. +.+..++
T Consensus 136 ~gktvGIiGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~~--aDvV~l~lPlt~~t~~li 209 (324)
T 3evt_A 136 TGQQLLIYGT-GQIGQSLAAKASALGMHVI-GVNTTGHPADHFHETVAFTATADALAT--ANFIVNALPLTPTTHHLF 209 (324)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSCCCCTTCSEEEEGGGCHHHHHH--CSEEEECCCCCGGGTTCB
T ss_pred cCCeEEEECc-CHHHHHHHHHHHhCCCEEE-EECCCcchhHhHhhccccCCHHHHHhh--CCEEEEcCCCchHHHHhc
Confidence 3578999999 9999999999999999976 566643111 11112235678898876 9999999994 3444444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0083 Score=57.39 Aligned_cols=89 Identities=12% Similarity=0.136 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..|+.....+ ..|+..+.+++++..+ .|++++++|.. .+..++
T Consensus 190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~~~~~~~~~~G~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li 265 (393)
T 2nac_A 190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYPV--CDVVTLNCPLHPETEHMI 265 (393)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGGG--CSEEEECSCCCTTTTTCB
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EEcCCccchhhHhhcCceecCCHHHHHhc--CCEEEEecCCchHHHHHh
Confidence 3578999999 9999999999999999976 6676541121 2466666789999876 99999999953 334444
Q ss_pred -HHHHH-cCCCEEEE-ecCC
Q psy8894 105 -HEALD-AEMPLIVC-ITEG 121 (306)
Q Consensus 105 -~e~~~-~Gi~~vvi-~t~G 121 (306)
++.++ ..-..+++ .+.|
T Consensus 266 ~~~~l~~mk~gailIN~aRG 285 (393)
T 2nac_A 266 NDETLKLFKRGAYIVNTARG 285 (393)
T ss_dssp SHHHHTTSCTTEEEEECSCG
T ss_pred hHHHHhhCCCCCEEEECCCc
Confidence 23333 34444443 4444
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=55.07 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.++|+|+|. |++|+...+.++.+|++++ ..||... ........|.+++++... .|++++++|...
T Consensus 145 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDvV~~~~P~~~ 209 (333)
T 1dxy_A 145 QQTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPM-KGDHPDFDYVSLEDLFKQ--SDVIDLHVPGIE 209 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-SSCCTTCEECCHHHHHHH--CSEEEECCCCCG
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhhHhccccCCHHHHHhc--CCEEEEcCCCch
Confidence 578999999 9999999999999999976 6776542 111111235689998876 999999999754
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.2 Score=44.06 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCeecc-CCHHhhhhcCCCcEEEEecCch-----hHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLPVF-NTVKEARDATGAEATVIYVPPP-----GAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip~y-~sl~el~~~~~iDlavi~vp~~-----~~~~ 102 (306)
++|.|.|+ |..|+...+.|++.|+++++.......... -.++..+ -++.++. -.++|++|-+.... ....
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~-~~~~d~vi~~a~~~~~~~~~~~~ 83 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS-LDGVTHLLISTAPDSGGDPVLAA 83 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC-CTTCCEEEECCCCBTTBCHHHHH
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc-cCCCCEEEECCCccccccHHHHH
Confidence 68999998 999999999999999998755432210001 1234333 2444432 23599999876432 3455
Q ss_pred HHHHHHH--cCCCEEEEecC
Q psy8894 103 AIHEALD--AEMPLIVCITE 120 (306)
Q Consensus 103 ~~~e~~~--~Gi~~vvi~t~ 120 (306)
+++.|.+ .+++.++.+++
T Consensus 84 l~~a~~~~~~~~~~~v~~Ss 103 (286)
T 3ius_A 84 LGDQIAARAAQFRWVGYLST 103 (286)
T ss_dssp HHHHHHHTGGGCSEEEEEEE
T ss_pred HHHHHHhhcCCceEEEEeec
Confidence 6677777 68888776554
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.00073 Score=61.01 Aligned_cols=89 Identities=9% Similarity=-0.014 Sum_probs=54.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|+|||+ |++|+...+.+.+. ++++...|++... + +..|. .+.+++++.+. .|++++++|+....+++++
T Consensus 3 m~I~iIG~-G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~--~DvVilav~~~~~~~v~~~ 77 (276)
T 2i76_A 3 LVLNFVGT-GTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPEL--NGVVFVIVPDRYIKTVANH 77 (276)
T ss_dssp -CCEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC-----CEEECSCTTTHHHHHTT
T ss_pred ceEEEEeC-CHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhc--CCEEEEeCChHHHHHHHHH
Confidence 47999998 99999888877766 7664456665310 1 12255 66777776554 8999999999998888877
Q ss_pred HHHcCCCEEEEecCCCChh
Q psy8894 107 ALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~ 125 (306)
+...+ +.++..+++.+.+
T Consensus 78 l~~~~-~ivi~~s~~~~~~ 95 (276)
T 2i76_A 78 LNLGD-AVLVHCSGFLSSE 95 (276)
T ss_dssp TCCSS-CCEEECCSSSCGG
T ss_pred hccCC-CEEEECCCCCcHH
Confidence 64222 3344445566554
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.031 Score=49.93 Aligned_cols=87 Identities=14% Similarity=0.185 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--c---------eecCeeccC-------CHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--K---------THLDLPVFN-------TVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~---------~i~Gip~y~-------sl~el~~~~~iDla 91 (306)
.++|+|+|++|..|+...+.|.+.|++++..+...... . ...|+.++. ++.++.+. +|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~--~d~v 81 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKN--VDVV 81 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHT--CSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcC--CCEE
Confidence 46799999999999999999999999876543321100 0 012333321 24444444 9999
Q ss_pred EEecCc---hhHHHHHHHHHHcC-CCEEEEec
Q psy8894 92 VIYVPP---PGAAKAIHEALDAE-MPLIVCIT 119 (306)
Q Consensus 92 vi~vp~---~~~~~~~~e~~~~G-i~~vvi~t 119 (306)
+.+.+. .....+++.|.+.| ++.++ ++
T Consensus 82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v-~S 112 (308)
T 1qyc_A 82 ISTVGSLQIESQVNIIKAIKEVGTVKRFF-PS 112 (308)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCSEEE-CS
T ss_pred EECCcchhhhhHHHHHHHHHhcCCCceEe-ec
Confidence 988764 34677888888898 99876 44
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.011 Score=55.05 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||... ........|.+++++..+ .|++++++|..
T Consensus 145 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDvV~~~~p~t 209 (331)
T 1xdw_A 145 RNCTVGVVGL-GRIGRVAAQIFHGMGATVI-GEDVFEI-KGIEDYCTQVSLDEVLEK--SDIITIHAPYI 209 (331)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CSCTTTCEECCHHHHHHH--CSEEEECCCCC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCcc-HHHHhccccCCHHHHHhh--CCEEEEecCCc
Confidence 3578999999 9999999999999999976 6776542 111111235689898876 99999999864
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0084 Score=55.42 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|.. +.+++++... .|++++++|...
T Consensus 141 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~~--aDvVvl~~P~~~ 208 (313)
T 2ekl_A 141 AGKTIGIVGF-GRIGTKVGIIANAMGMKVL-AYDILDIREKAEKINAK-AVSLEELLKN--SDVISLHVTVSK 208 (313)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCE-ECCHHHHHHH--CSEEEECCCCCT
T ss_pred CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCcchhHHHhcCce-ecCHHHHHhh--CCEEEEeccCCh
Confidence 3578999999 9999999999999999976 677764211 123555 3479888876 999999999643
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.007 Score=54.84 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=59.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-----C-CeEEEeeCCCCCCce--e-cCeecc--------------CCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-----G-TKVVGGVSPGKGGKT--H-LDLPVF--------------NTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-----g-~~vv~~VnP~~~g~~--i-~Gip~y--------------~sl~el~~~~ 86 (306)
+++|+|+|+ |.+|......|.+. | +++. .+++...-+. - .|+.+. .+.+.+ .
T Consensus 8 ~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-- 82 (317)
T 2qyt_A 8 PIKIAVFGL-GGVGGYYGAMLALRAAATDGLLEVS-WIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEV-G-- 82 (317)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHHHHHTTSSEEEE-EECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHH-C--
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCccccCCCCCEE-EEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCcccc-C--
Confidence 468999999 99999888888887 8 7765 5665210011 1 344433 233332 3
Q ss_pred CCcEEEEecCchhHHHHHHHHHHc-CC-CEEEEecCCCCh
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDA-EM-PLIVCITEGIPQ 124 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~-Gi-~~vvi~t~Gf~e 124 (306)
+.|++++++|+..+.+++++.... +- +.++.++.|+..
T Consensus 83 ~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~ 122 (317)
T 2qyt_A 83 TVDYILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADI 122 (317)
T ss_dssp CEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred CCCEEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence 389999999999998888877543 11 234456788754
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=54.61 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHH---c-CCeEEEeeCC-------------CCCCc----------e--ecC--eecc--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE---Y-GTKVVGGVSP-------------GKGGK----------T--HLD--LPVF--N 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~---~-g~~vv~~VnP-------------~~~g~----------~--i~G--ip~y--~ 77 (306)
.+|+|+|+ |+.|+...+.+.+ + ++++++.-+. ...|. . +.| ++++ .
T Consensus 3 ikVgI~G~-G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 3 VRVAINGF-GRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 58999999 9999999998887 5 8888765433 00010 0 123 3444 2
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+.++++- +.++|+++.|+|.....+.+...++.|+|.++|=.++
T Consensus 82 dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a 126 (339)
T 2x5j_O 82 SLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG 126 (339)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence 4566641 1149999999999999999999999999988763344
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.02 Score=53.76 Aligned_cols=89 Identities=11% Similarity=0.008 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCCceec--Cee-ccCCHHh-hhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGGKTHL--DLP-VFNTVKE-ARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g~~i~--Gip-~y~sl~e-l~~~~~iDlavi~vp~~~~~~~ 103 (306)
.+|+|+|++|-.|....+.|.++.|. +...-..+..|+.+. |.. .+.++++ ..+ ++|+++.|+|...+.+.
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~a~~~~~s~~~ 79 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPS--GLDIALFSAGSAMSKVQ 79 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCT--TCSEEEECSCHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhc--cCCEEEECCChHHHHHH
Confidence 47999999999999999988887554 444455666565442 210 1111111 112 49999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCC
Q psy8894 104 IHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf 122 (306)
+..+.+.|++. +-.++-|
T Consensus 80 a~~~~~~G~~v-ID~Sa~~ 97 (344)
T 3tz6_A 80 APRFAAAGVTV-IDNSSAW 97 (344)
T ss_dssp HHHHHHTTCEE-EECSSTT
T ss_pred HHHHHhCCCEE-EECCCcc
Confidence 99999999974 4456655
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.022 Score=55.73 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=61.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--c-------C-------------eeccCCHHhhhhcC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--L-------D-------------LPVFNTVKEARDAT 86 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~-------G-------------ip~y~sl~el~~~~ 86 (306)
.++|+|+|+ |.+|......|.+.|++++ .+|.+... +.+ . | +....++++..+.
T Consensus 8 ~~~I~VIG~-G~vG~~lA~~la~~G~~V~-~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGS-GSVGLVTGACLADIGHDVF-CLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH-
T ss_pred CceEEEECc-CHHHHHHHHHHHhCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc-
Confidence 578999999 9999988888999999976 55543200 000 1 1 3344456555544
Q ss_pred CCcEEEEecCc----------hhHHHHHHHHHH-cCCCEEEEecCCCCh
Q psy8894 87 GAEATVIYVPP----------PGAAKAIHEALD-AEMPLIVCITEGIPQ 124 (306)
Q Consensus 87 ~iDlavi~vp~----------~~~~~~~~e~~~-~Gi~~vvi~t~Gf~e 124 (306)
.|++++++|. ..+.++++.... ..-..+++..++.+.
T Consensus 85 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~ 132 (478)
T 2y0c_A 85 -GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPV 132 (478)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCT
T ss_pred -CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCC
Confidence 8999999998 788888887765 333455555666644
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.012 Score=55.47 Aligned_cols=85 Identities=9% Similarity=0.105 Sum_probs=59.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..|+.....+ ..|+..+.+++++..+ .|++++++|.. .+..++
T Consensus 163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li 238 (351)
T 3jtm_A 163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLL-YHDRLQMAPELEKETGAKFVEDLNEMLPK--CDVIVINMPLTEKTRGMF 238 (351)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHGGGCCEEE-EECSSCCCHHHHHHHCCEECSCHHHHGGG--CSEEEECSCCCTTTTTCB
T ss_pred cCCEEeEEEe-CHHHHHHHHHHHHCCCEEE-EeCCCccCHHHHHhCCCeEcCCHHHHHhc--CCEEEECCCCCHHHHHhh
Confidence 3578999999 9999999999999999975 6676531111 2466666789999887 99999999953 333333
Q ss_pred --HHHHHcCCCEEEE
Q psy8894 105 --HEALDAEMPLIVC 117 (306)
Q Consensus 105 --~e~~~~Gi~~vvi 117 (306)
+......-..+++
T Consensus 239 ~~~~l~~mk~gailI 253 (351)
T 3jtm_A 239 NKELIGKLKKGVLIV 253 (351)
T ss_dssp SHHHHHHSCTTEEEE
T ss_pred cHHHHhcCCCCCEEE
Confidence 2233344455444
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.02 Score=53.54 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC-------------CCCC----------cee--cC--eeccC--CHHhh
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP-------------GKGG----------KTH--LD--LPVFN--TVKEA 82 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP-------------~~~g----------~~i--~G--ip~y~--sl~el 82 (306)
+|+|+|+ |+.|+...+.+.++++++++.-++ +..| +.+ .| ++++. +.+++
T Consensus 2 kVgInG~-G~IGr~vlr~l~~~~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~l 80 (331)
T 2g82_O 2 KVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI 80 (331)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGS
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhhC
Confidence 7999999 999999999877778888754332 1112 111 23 45552 46666
Q ss_pred hh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 83 RD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 83 ~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+- +.++|+++.++|.....+.+...++.|.|.+|+=.+
T Consensus 81 ~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsap 119 (331)
T 2g82_O 81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP 119 (331)
T ss_dssp CTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred cccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCC
Confidence 52 125899999999999999999999999999886333
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.013 Score=54.19 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
+.++|+|+|. |++|+...+.++.+|++++ ..||.....+ + .+.+++++..+ .|++++++|... ...++
T Consensus 143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~---~-~~~~l~ell~~--aDvV~l~~p~~~~t~~li 211 (311)
T 2cuk_A 143 QGLTLGLVGM-GRIGQAVAKRALAFGMRVV-YHARTPKPLP---Y-PFLSLEELLKE--ADVVSLHTPLTPETHRLL 211 (311)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSS---S-CBCCHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred CCCEEEEEEE-CHHHHHHHHHHHHCCCEEE-EECCCCcccc---c-ccCCHHHHHhh--CCEEEEeCCCChHHHhhc
Confidence 3578999999 9999999999999999975 6777642122 2 36789998876 899999999863 44444
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.033 Score=49.86 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---------eecCeeccC-------CHHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---------THLDLPVFN-------TVKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---------~i~Gip~y~-------sl~el~~~~~iDlav 92 (306)
.++|+|+|++|..|+...+.|.+.|+++++........ . ...|+.++. ++.++.+ ++|+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi 81 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDVVI 81 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCEEE
Confidence 46799999999999999999999999987543321100 0 012333321 2444444 499999
Q ss_pred EecCc-------hhHHHHHHHHHHcC-CCEEE
Q psy8894 93 IYVPP-------PGAAKAIHEALDAE-MPLIV 116 (306)
Q Consensus 93 i~vp~-------~~~~~~~~e~~~~G-i~~vv 116 (306)
.+... .....+++.|.+.| ++.++
T Consensus 82 ~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v 113 (313)
T 1qyd_A 82 SALAGGVLSHHILEQLKLVEAIKEAGNIKRFL 113 (313)
T ss_dssp ECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred ECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence 87653 35677888898999 99876
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.1 Score=50.94 Aligned_cols=90 Identities=21% Similarity=0.182 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-cee--c-------------------CeeccCCHHhhhhc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-KTH--L-------------------DLPVFNTVKEARDA 85 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-~~i--~-------------------Gip~y~sl~el~~~ 85 (306)
.++|+|+|+ |.+|......|.+. |++++ .+|.+... +.+ . ++....++.+....
T Consensus 9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~ 86 (481)
T 2o3j_A 9 VSKVVCVGA-GYVGGPTCAMIAHKCPHITVT-VVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE 86 (481)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc
Confidence 368999999 99999888888877 78876 55543200 000 0 23344455555554
Q ss_pred CCCcEEEEecCchh---------------HHHHHHHHHHc-CCCEEEEecCCCC
Q psy8894 86 TGAEATVIYVPPPG---------------AAKAIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 86 ~~iDlavi~vp~~~---------------~~~~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
.|++++++|... +.++++..... .-..+++..+..+
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~ 138 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP 138 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 899999987643 66667666553 3345665544444
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.018 Score=54.95 Aligned_cols=83 Identities=19% Similarity=0.054 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCe------------------eccCCHHhhhhcCCCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDL------------------PVFNTVKEARDATGAE 89 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gi------------------p~y~sl~el~~~~~iD 89 (306)
++|+|+|+ |.+|......|.+ |++++ .+|.+... +.+ .+. ....++++.... .|
T Consensus 1 MkI~VIG~-G~vG~~~A~~La~-G~~V~-~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~--aD 75 (402)
T 1dlj_A 1 MKIAVAGS-GYVGLSLGVLLSL-QNEVT-IVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE--AE 75 (402)
T ss_dssp CEEEEECC-SHHHHHHHHHHTT-TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH--CS
T ss_pred CEEEEECC-CHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC--CC
Confidence 37999999 9999988888888 98865 56554200 011 122 334456555554 89
Q ss_pred EEEEecCch-----------hHHHHHHHHHHcCCCEEEEe
Q psy8894 90 ATVIYVPPP-----------GAAKAIHEALDAEMPLIVCI 118 (306)
Q Consensus 90 lavi~vp~~-----------~~~~~~~e~~~~Gi~~vvi~ 118 (306)
++++++|+. .+.++++......-..+++.
T Consensus 76 vviiavpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~ 115 (402)
T 1dlj_A 76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLII 115 (402)
T ss_dssp EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEEecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEE
Confidence 999999997 47777777665444455554
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.036 Score=50.29 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=59.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCcee---------cCeecc-------CCHHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKTH---------LDLPVF-------NTVKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~i---------~Gip~y-------~sl~el~~~~~iDla 91 (306)
..++|.|.|++|-.|+...+.|.+.|++++.... +.. ..+. .++..+ .++.++.+..++|++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 82 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNS-KREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA 82 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSS-CTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcc-hHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence 4578999999999999999999999999774422 221 0110 022222 234445443359999
Q ss_pred EEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 92 VIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 92 vi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|-+... ..+..+++.|.+.+++.++.+++
T Consensus 83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 129 (341)
T 3enk_A 83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSS 129 (341)
T ss_dssp EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 876532 12445778888899988887765
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.046 Score=52.58 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~--~ 105 (306)
+-++++|+|. |++|+...+.++.+|++++ ..||... ....+...+.+++++..+ .|++++++|... +..++ +
T Consensus 155 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~yd~~~~-~~~~~~~~~~sl~ell~~--aDvV~lhvPlt~~T~~li~~~ 229 (416)
T 3k5p_A 155 RGKTLGIVGY-GNIGSQVGNLAESLGMTVR-YYDTSDK-LQYGNVKPAASLDELLKT--SDVVSLHVPSSKSTSKLITEA 229 (416)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECTTCC-CCBTTBEECSSHHHHHHH--CSEEEECCCC-----CCBCHH
T ss_pred CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCcch-hcccCcEecCCHHHHHhh--CCEEEEeCCCCHHHhhhcCHH
Confidence 3578999999 9999999999999999976 6776531 223345556789999987 999999999743 33333 3
Q ss_pred HHHHcCCCEEEE-ecCCC
Q psy8894 106 EALDAEMPLIVC-ITEGI 122 (306)
Q Consensus 106 e~~~~Gi~~vvi-~t~Gf 122 (306)
......-..+++ ++.|-
T Consensus 230 ~l~~mk~gailIN~aRG~ 247 (416)
T 3k5p_A 230 KLRKMKKGAFLINNARGS 247 (416)
T ss_dssp HHHHSCTTEEEEECSCTT
T ss_pred HHhhCCCCcEEEECCCCh
Confidence 333445455444 45554
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.054 Score=49.57 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=59.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--------ecCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--------HLDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--------i~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|+|.|++|..|+.+.+.|++.|+++++.+....... . -.++.++ .++.++.++.++|++|-
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 468999999999999999999999998775543321000 0 0233322 23455555235999998
Q ss_pred ecCc---hhHHHHHHHHHHcC-CCEEEE
Q psy8894 94 YVPP---PGAAKAIHEALDAE-MPLIVC 117 (306)
Q Consensus 94 ~vp~---~~~~~~~~e~~~~G-i~~vvi 117 (306)
+... .....+++.|.+.| ++.++.
T Consensus 90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 90 TVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 7664 45677888999999 998763
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.024 Score=54.10 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-C-CeEEEe-eCCCCC---------C-c--eecC---------------eeccC--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-G-TKVVGG-VSPGKG---------G-K--THLD---------------LPVFN-- 77 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g-~~vv~~-VnP~~~---------g-~--~i~G---------------ip~y~-- 77 (306)
.++|+|+|++|..|+..++.+.++ + |++++. .+.+.. + + .+.+ ..++.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~ 83 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 83 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCcEEEEcChHHHHHHHHHhccCCcEEEeCc
Confidence 378999999999999988888876 4 787644 332210 0 0 0001 11211
Q ss_pred -CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhH--HHHHHHHHHHhcCCeEE
Q psy8894 78 -TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLD--MVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 78 -sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~--~~~~~~~~ar~~gi~ii 143 (306)
.+.++.... +|+++.+++.........+|+++|.+. ++ ... |.. .-.++.++|+++|+.++
T Consensus 84 ~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~V-vl-ANK--E~lv~~G~~l~~~A~~~gv~li 147 (388)
T 1r0k_A 84 DALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTV-AL-ANK--ESLVSAGGLMIDAVREHGTTLL 147 (388)
T ss_dssp HHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEE-EE-CCS--HHHHTTHHHHHHHHHHHTCEEE
T ss_pred cHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEE-EE-eCc--HHHHhhHHHHHHHHHHcCCEEE
Confidence 123444443 899999998888888889999999764 42 332 221 11333457899998884
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.024 Score=52.74 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~~ 105 (306)
..++|+|+|. |++|+...+.+..+|++++ ..|+....+ ...|+.. .+++++..+ .|++++++|.. .+..++.
T Consensus 145 ~g~~vgIIG~-G~iG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~e~l~~--aDiVil~vp~~~~t~~~i~ 219 (333)
T 2d0i_A 145 YGKKVGILGM-GAIGKAIARRLIPFGVKLY-YWSRHRKVNVEKELKARY-MDIDELLEK--SDIVILALPLTRDTYHIIN 219 (333)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCHHHHHHHTEEE-CCHHHHHHH--CSEEEECCCCCTTTTTSBC
T ss_pred CcCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCcee-cCHHHHHhh--CCEEEEcCCCChHHHHHhC
Confidence 3578999999 9999999999999999975 677764211 1135543 478887766 89999999987 3333332
Q ss_pred ----HHHHcCCCEEEEecCCC
Q psy8894 106 ----EALDAEMPLIVCITEGI 122 (306)
Q Consensus 106 ----e~~~~Gi~~vvi~t~Gf 122 (306)
...+.| .+++.+.|.
T Consensus 220 ~~~~~~mk~g--ilin~srg~ 238 (333)
T 2d0i_A 220 EERVKKLEGK--YLVNIGRGA 238 (333)
T ss_dssp HHHHHHTBTC--EEEECSCGG
T ss_pred HHHHhhCCCC--EEEECCCCc
Confidence 223344 555555553
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.032 Score=52.30 Aligned_cols=86 Identities=12% Similarity=0.044 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-------------CCCCc----------e--ecC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-------------GKGGK----------T--HLD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-------------~~~g~----------~--i~G--ip~y~--s 78 (306)
.+|+|+|+ |+.|+...+.+.++ ++++++.-++ +..|. . +.| ++++. +
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred eEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 58999999 99999999988776 4788754333 11111 1 123 34443 5
Q ss_pred HHhhhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.++++-. .++|+++.|+|.....+.+...++.|++.+++
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVI 121 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 6677621 25999999999999999999999999998875
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.034 Score=49.69 Aligned_cols=186 Identities=17% Similarity=0.044 Sum_probs=98.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC-CeEEEee-CCCCCC-c--eecCeeccC-------CHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGV-SPGKGG-K--THLDLPVFN-------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~V-nP~~~g-~--~i~Gip~y~-------sl~el~~~~~iDlavi~vp~ 97 (306)
.++|.|.|++|..|+...+.|.+.| +++++.. +|.... . ...|+.++. ++.++.+ ++|.++.+.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~ 82 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALN--GAYATFIVTNY 82 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHh--cCCEEEEeCCC
Confidence 4789999999999999999999888 8877544 232100 0 012333221 2444444 49999987653
Q ss_pred h----------hHHHHHHHHHHcCCCEEEEecCCC----Ch----hH---HHHHHHHHHHhcCC--eEEccCCCceecCc
Q psy8894 98 P----------GAAKAIHEALDAEMPLIVCITEGI----PQ----LD---MVKVKHRLIRQSKS--RLIGPNCPGIIAPE 154 (306)
Q Consensus 98 ~----------~~~~~~~e~~~~Gi~~vvi~t~Gf----~e----~~---~~~~~~~~ar~~gi--~iiGPNc~Gi~~~~ 154 (306)
. ....+++.|.+.|++.++..++.- ++ .. .....+++.++.|+ .++=|.. ++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~gi~~~ilrp~~--~~~~~ 160 (299)
T 2wm3_A 83 WESCSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDIGVPMTSVRLPC--YFENL 160 (299)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHHTCCEEEEECCE--EGGGG
T ss_pred CccccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHHHHHHHCCCCEEEEeecH--Hhhhc
Confidence 1 345677888888999888644321 01 00 11122235566676 4444432 22111
Q ss_pred cc-ccc-CC-CC------CCCCCCCEEEEecChhhHHHHHHHHHhC--CCceEEEEecCCCCCCCCCHHHHHHHhhcCCC
Q psy8894 155 QC-KIG-IM-PG------HIHQRGCVGVVSRSGTLTYEAVHQTTQV--GLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPE 223 (306)
Q Consensus 155 ~~-~~~-~~-~~------~~~~~G~va~vSqSG~~~~~~~~~~~~~--g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~ 223 (306)
.. ... .. .. .....+.+.+++.. -++..+...+... -.|-.+.+ +++ . +++.|+.+.+.+--.
T Consensus 161 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~-Dva~~~~~~l~~~~~~~g~~~~~--~g~--~-~s~~e~~~~~~~~~g 234 (299)
T 2wm3_A 161 LSHFLPQKAPDGKSYLLSLPTGDVPMDGMSVS-DLGPVVLSLLKMPEKYVGQNIGL--STC--R-HTAEEYAALLTKHTR 234 (299)
T ss_dssp GTTTCCEECTTSSSEEECCCCTTSCEEEECGG-GHHHHHHHHHHSHHHHTTCEEEC--CSE--E-ECHHHHHHHHHHHHS
T ss_pred hhhcCCcccCCCCEEEEEecCCCCccceecHH-HHHHHHHHHHcChhhhCCeEEEe--eec--c-CCHHHHHHHHHHHHC
Confidence 00 000 00 00 00123456777655 4555554444321 13433433 335 3 899999998876433
Q ss_pred cc
Q psy8894 224 TK 225 (306)
Q Consensus 224 t~ 225 (306)
.+
T Consensus 235 ~~ 236 (299)
T 2wm3_A 235 KV 236 (299)
T ss_dssp SC
T ss_pred CC
Confidence 33
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.015 Score=53.64 Aligned_cols=66 Identities=17% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.++|+|+|. |++|+...+.++.+|++++ .+||..... ...|+.. .+++++... .|++++++|...
T Consensus 141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~-~~l~ell~~--aDvV~l~~p~~~ 208 (307)
T 1wwk_A 141 EGKTIGIIGF-GRIGYQVAKIANALGMNIL-LYDPYPNEERAKEVNGKF-VDLETLLKE--SDVVTIHVPLVE 208 (307)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHTTCEE-CCHHHHHHH--CSEEEECCCCST
T ss_pred CCceEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCCChhhHhhcCccc-cCHHHHHhh--CCEEEEecCCCh
Confidence 3578999999 9999999999999999976 677764211 1235543 378888876 999999999643
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.014 Score=54.72 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=49.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||... .+..+.-.|.+++++..+ .|++++++|.
T Consensus 148 gktvgIiGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~l~ell~~--aDvV~l~~Pl 210 (343)
T 2yq5_A 148 NLTVGLIGV-GHIGSAVAEIFSAMGAKVI-AYDVAYN-PEFEPFLTYTDFDTVLKE--ADIVSLHTPL 210 (343)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-GGGTTTCEECCHHHHHHH--CSEEEECCCC
T ss_pred CCeEEEEec-CHHHHHHHHHHhhCCCEEE-EECCChh-hhhhccccccCHHHHHhc--CCEEEEcCCC
Confidence 578999999 9999999999999999976 6777642 222222345589999887 9999999995
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.014 Score=55.08 Aligned_cols=66 Identities=12% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++|+|+|. |++|+...+.++.+|++ ++ ..|+.....+ ..|+..+.+++++..+ .|++++++|..
T Consensus 163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~-~~d~~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~~P~t 232 (364)
T 2j6i_A 163 EGKTIATIGA-GRIGYRVLERLVPFNPKELL-YYDYQALPKDAEEKVGARRVENIEELVAQ--ADIVTVNAPLH 232 (364)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHGGGCCSEEE-EECSSCCCHHHHHHTTEEECSSHHHHHHT--CSEEEECCCCS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCcEEE-EECCCccchhHHHhcCcEecCCHHHHHhc--CCEEEECCCCC
Confidence 3578999999 99999999999999997 76 6776531111 2466656789999876 99999999985
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.035 Score=48.93 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=56.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEee-CCCCCCcee--cCeecc-------CCHHhhhhcCCCcEEEEecCc--
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGV-SPGKGGKTH--LDLPVF-------NTVKEARDATGAEATVIYVPP-- 97 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V-nP~~~g~~i--~Gip~y-------~sl~el~~~~~iDlavi~vp~-- 97 (306)
+|.|.|++|..|+...+.|.+. |+++++.. +|.. ..+. .++.++ .++.++.+ ++|+++-+...
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~a~~~~ 77 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAK-AQALAAQGITVRQADYGDEAALTSALQ--GVEKLLLISSSEV 77 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTT-CHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECC----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHh-hhhhhcCCCeEEEcCCCCHHHHHHHHh--CCCEEEEeCCCCc
Confidence 4899999999999999999887 89877543 2221 1111 123222 12444444 48999877543
Q ss_pred ----hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ----PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ----~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 78 ~~~~~~~~~l~~a~~~~~~~~~v~~Ss 104 (286)
T 2zcu_A 78 GQRAPQHRNVINAAKAAGVKFIAYTSL 104 (286)
T ss_dssp ----CHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 35677888888899998887665
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.042 Score=46.39 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee-cCeecc-CCHHh----hhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH-LDLPVF-NTVKE----ARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i-~Gip~y-~sl~e----l~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|..|+...+.|.+.|++++... .+... .+. .++..+ -++.+ ... ++|++|.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~-R~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~~ 77 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV-RNAGKITQTHKDINILQKDIFDLTLSDLS--DQNVVVDAYGISPDEAE 77 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-SCSHHHHHHCSSSEEEECCGGGCCHHHHT--TCSEEEECCCSSTTTTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEE-cCchhhhhccCCCeEEeccccChhhhhhc--CCCEEEECCcCCccccc
Confidence 4799999999999999999999999977443 22100 000 222222 23332 222 48988877644
Q ss_pred ---hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ---PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ---~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++++++
T Consensus 78 ~~~~~~~~l~~a~~~~~~~~~v~~SS 103 (221)
T 3ew7_A 78 KHVTSLDHLISVLNGTVSPRLLVVGG 103 (221)
T ss_dssp SHHHHHHHHHHHHCSCCSSEEEEECC
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEec
Confidence 23456667777777777776664
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=54.70 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-cCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-LDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|+|+|. |++|+...+.++.+|++++ ..||... ... .+.....+++++... .|++++++|..
T Consensus 146 g~~vgIiG~-G~IG~~~A~~l~~~G~~V~-~~d~~~~-~~~~~~~~~~~~l~ell~~--aDvV~l~~p~~ 210 (333)
T 1j4a_A 146 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRN-PELEKKGYYVDSLDDLYKQ--ADVISLHVPDV 210 (333)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-HHHHHTTCBCSCHHHHHHH--CSEEEECSCCC
T ss_pred CCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EECCCcc-hhHHhhCeecCCHHHHHhh--CCEEEEcCCCc
Confidence 578999999 9999999999999999976 6777641 111 122323378888876 99999999954
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.028 Score=52.47 Aligned_cols=88 Identities=13% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~- 104 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+. +.+++++..+ .|++++++|... +..++
T Consensus 164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~~--aDvV~l~~P~t~~t~~li~ 238 (335)
T 2g76_A 164 NGKTLGILGL-GRIGREVATRMQSFGMKTI-GYDPIISPEVSASFGVQ-QLPLEEIWPL--CDFITVHTPLLPSTTGLLN 238 (335)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSSCHHHHHHTTCE-ECCHHHHGGG--CSEEEECCCCCTTTTTSBC
T ss_pred CcCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCcchhhhhhcCce-eCCHHHHHhc--CCEEEEecCCCHHHHHhhC
Confidence 3578999999 9999999999999999976 678764211 123554 3589998876 999999999864 44444
Q ss_pred HHHHH-cCCCEEEE-ecCC
Q psy8894 105 HEALD-AEMPLIVC-ITEG 121 (306)
Q Consensus 105 ~e~~~-~Gi~~vvi-~t~G 121 (306)
++..+ ..-..+++ .+.|
T Consensus 239 ~~~l~~mk~gailIN~arg 257 (335)
T 2g76_A 239 DNTFAQCKKGVRVVNCARG 257 (335)
T ss_dssp HHHHTTSCTTEEEEECSCT
T ss_pred HHHHhhCCCCcEEEECCCc
Confidence 23333 34444443 4444
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.12 Score=50.69 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CC-eEEEeeCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GT-KVVGGVSPG 64 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~-~vv~~VnP~ 64 (306)
.++|+|+|+ |.+|......|.+. |+ +++ .+|.+
T Consensus 18 ~mkIaVIGl-G~mG~~lA~~la~~~G~~~V~-~~D~~ 52 (478)
T 3g79_A 18 IKKIGVLGM-GYVGIPAAVLFADAPCFEKVL-GFQRN 52 (478)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHSTTCCEEE-EECCC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCCeEE-EEECC
Confidence 568999999 99999998999999 99 876 44443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.028 Score=52.29 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.++|+|+|+ |++|+...+.+..+|++++ .+|+....+. ..|+. +.+++++... .|++++++|...
T Consensus 150 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~-~~~l~~~l~~--aDvVil~vp~~~ 216 (334)
T 2dbq_A 150 GKTIGIIGL-GRIGQAIAKRAKGFNMRIL-YYSRTRKEEVERELNAE-FKPLEDLLRE--SDFVVLAVPLTR 216 (334)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHCCE-ECCHHHHHHH--CSEEEECCCCCT
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhCCCEEE-EECCCcchhhHhhcCcc-cCCHHHHHhh--CCEEEECCCCCh
Confidence 478999999 9999999999999999975 6777642111 12544 3578887776 899999999865
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.031 Score=53.14 Aligned_cols=86 Identities=12% Similarity=0.045 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-------------CCCCc----------e--ecC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-------------GKGGK----------T--HLD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-------------~~~g~----------~--i~G--ip~y~--s 78 (306)
.||+|+|+ |+.|+...+.+.++ ++++++.-++ +..|. . +.| ++++. +
T Consensus 3 ikVgInGf-GrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 3 IRVAINGF-GRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred cEEEEECc-CHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 58999999 99999999988775 4788765443 11111 1 234 34443 5
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.++++- +.++|+++.|++.....+.+...++.|++.|++
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVI 121 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLI 121 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEE
Confidence 667752 124999999999999999999999999998875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.049 Score=48.63 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-CCC----c-------eecCeeccC-------CHHhhhhcCCCcEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-KGG----K-------THLDLPVFN-------TVKEARDATGAEAT 91 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-~~g----~-------~i~Gip~y~-------sl~el~~~~~iDla 91 (306)
++|+|+|++|..|+.+.+.|.+.|+++++.+-.. ... . ...|+.++. ++.++.+ ++|++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d~v 80 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QVDIV 80 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CCCEE
Confidence 5799999999999999999999999876554322 000 0 012333221 2444444 49999
Q ss_pred EEecCc---hhHHHHHHHHHHcC-CCEEEEec
Q psy8894 92 VIYVPP---PGAAKAIHEALDAE-MPLIVCIT 119 (306)
Q Consensus 92 vi~vp~---~~~~~~~~e~~~~G-i~~vvi~t 119 (306)
|.+.+. .....+++.|.+.| ++.++ ++
T Consensus 81 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v-~S 111 (307)
T 2gas_A 81 ICAAGRLLIEDQVKIIKAIKEAGNVKKFF-PS 111 (307)
T ss_dssp EECSSSSCGGGHHHHHHHHHHHCCCSEEE-CS
T ss_pred EECCcccccccHHHHHHHHHhcCCceEEe-ec
Confidence 988764 45677888888888 99876 44
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.05 Score=49.04 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=58.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC-CCC--c--------eecCeecc-------CCHHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG-KGG--K--------THLDLPVF-------NTVKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~-~~g--~--------~i~Gip~y-------~sl~el~~~~~iDla 91 (306)
.++|+|+|++|..|+.+.+.|.+.|++++...... ... . .-.++.++ .++.++.+ ++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d~v 81 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVDIV 81 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEE
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCCEE
Confidence 35799999999999999999999999976543322 100 0 01233322 12444444 49999
Q ss_pred EEecCc---hhHHHHHHHHHHcC-CCEEE
Q psy8894 92 VIYVPP---PGAAKAIHEALDAE-MPLIV 116 (306)
Q Consensus 92 vi~vp~---~~~~~~~~e~~~~G-i~~vv 116 (306)
+.+... .....+++.|.+.| ++.++
T Consensus 82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 82 ISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred EECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 988764 45678889999999 99876
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.077 Score=45.62 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEee-CCCCCCc-eecCeecc-------CCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGV-SPGKGGK-THLDLPVF-------NTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~V-nP~~~g~-~i~Gip~y-------~sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|.|.|++|..|+...+.|.+.|+ +++... ++..... ...++..+ .++.++.+ ++|++|-+....
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vi~~ag~~ 95 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQ--GHDVGFCCLGTT 95 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGS--SCSEEEECCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhc--CCCEEEECCCcc
Confidence 47899999999999999999999999 876432 2321100 01122211 23334443 499999876532
Q ss_pred ---------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ---------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ---------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.+.+.+++.++.+++
T Consensus 96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS 132 (242)
T 2bka_A 96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132 (242)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEcc
Confidence 3455677788889988887776
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.026 Score=52.76 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC-------------CCCCc----------e--ecC--eeccC--CHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP-------------GKGGK----------T--HLD--LPVFN--TVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP-------------~~~g~----------~--i~G--ip~y~--sl~ 80 (306)
.+|+|+|+ |+.|+...+.+.++ .+++++.-+. ...|. . +.| ++++. +.+
T Consensus 2 ikVgI~G~-G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (334)
T 3cmc_O 2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (334)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-CHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence 47999999 99999999988876 7888755443 11111 0 123 34552 456
Q ss_pred hhh-hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EAR-DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~-~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++ .+.++|+++.++|.....+.+...++.|+|.++|
T Consensus 81 ~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVI 118 (334)
T 3cmc_O 81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII 118 (334)
T ss_dssp GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEE
Confidence 664 2125999999999999999999999999998775
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.045 Score=49.57 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec--CeeccC-------CHHhhhhcCCCcEEEEecCch---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL--DLPVFN-------TVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~--Gip~y~-------sl~el~~~~~iDlavi~vp~~--- 98 (306)
++|.|.|++|..|+...+.|.+.|+++++........+.+. ++..+. ++.++.+ ++|++|-+....
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih~a~~~~~~ 91 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSAGYYPSR 91 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTT--TCSEEEEC-------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHc--CCCEEEECCccCcCC
Confidence 48999999999999999999999999875433221111111 332221 2344444 499998765421
Q ss_pred -------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 92 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 126 (342)
T 2x4g_A 92 PRRWQEEVASALGQTNPFYAACLQARVPRILYVGS 126 (342)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 2356778888889887776665
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.14 Score=43.92 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC-----cee----cCeeccCCHHhhhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG-----KTH----LDLPVFNTVKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g-----~~i----~Gip~y~sl~el~~~~~iDlavi~vp~- 97 (306)
.++|.|.|++|..|+...+.|.+. |++++.. +.+... ..+ .++.-..++.++.+. +|++|-+...
T Consensus 4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~--~d~vi~~a~~~ 80 (253)
T 1xq6_A 4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL-VRSAQGKEKIGGEADVFIGDITDADSINPAFQG--IDALVILTSAV 80 (253)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEE-ESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTT--CSEEEECCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEE-EcCCCchhhcCCCeeEEEecCCCHHHHHHHHcC--CCEEEEecccc
Confidence 478999999999999999999998 8887744 322100 000 111112235555544 9999876431
Q ss_pred ------------------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.+++.++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 133 (253)
T 1xq6_A 81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGS 133 (253)
T ss_dssp CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 12466788888889988887665
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.027 Score=52.65 Aligned_cols=86 Identities=16% Similarity=0.146 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-------------CCCCc----------e--ecC--eeccC--C
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-------------GKGGK----------T--HLD--LPVFN--T 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-------------~~~g~----------~--i~G--ip~y~--s 78 (306)
.+|+|+|+ |+.|+...+.+.++ ++++++.-+. +..|. . +.| ++++. +
T Consensus 1 ~kVgI~G~-G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 79 (332)
T 1hdg_O 1 ARVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD 79 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CEEEEEcc-CHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCC
Confidence 37999999 99999999987765 5888755332 11111 1 123 44552 5
Q ss_pred HHhhh-hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEAR-DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~-~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.++++ .+.++|+++.++|.....+.+...++.|+|.+||
T Consensus 80 p~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVI 119 (332)
T 1hdg_O 80 PSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119 (332)
T ss_dssp GGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hHHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEE
Confidence 66664 2124999999999999999999999999998775
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0069 Score=55.66 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=59.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce----------ecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT----------HLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~----------i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
...++|+|+|+ |.||.-...++. .|++++ ..|++...-+ ..++....+++++ .. .|++|.++|.
T Consensus 10 ~~~~~V~vIG~-G~MG~~iA~~la-aG~~V~-v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~-~~--aDlVieavpe 83 (293)
T 1zej_A 10 HHHMKVFVIGA-GLMGRGIAIAIA-SKHEVV-LQDVSEKALEAAREQIPEELLSKIEFTTTLEKV-KD--CDIVMEAVFE 83 (293)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHSCGGGGGGEEEESSCTTG-GG--CSEEEECCCS
T ss_pred cCCCeEEEEee-CHHHHHHHHHHH-cCCEEE-EEECCHHHHHHHHHHHHHHHhCCeEEeCCHHHH-cC--CCEEEEcCcC
Confidence 45689999999 999998888899 999975 6776531000 0156666778774 33 8999999998
Q ss_pred hhH--HHHHHHHHHcCCCEEEE-ecCCCChhH
Q psy8894 98 PGA--AKAIHEALDAEMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 98 ~~~--~~~~~e~~~~Gi~~vvi-~t~Gf~e~~ 126 (306)
... ..++.++... -..++. -|+.++.++
T Consensus 84 ~~~vk~~l~~~l~~~-~~~IlasntSti~~~~ 114 (293)
T 1zej_A 84 DLNTKVEVLREVERL-TNAPLCSNTSVISVDD 114 (293)
T ss_dssp CHHHHHHHHHHHHTT-CCSCEEECCSSSCHHH
T ss_pred CHHHHHHHHHHHhcC-CCCEEEEECCCcCHHH
Confidence 775 3344555444 333442 245665543
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.028 Score=52.60 Aligned_cols=91 Identities=15% Similarity=-0.022 Sum_probs=63.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCC-------------CCCC-----------ce--ecCe--eccC--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSP-------------GKGG-----------KT--HLDL--PVFN-- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP-------------~~~g-----------~~--i~Gi--p~y~-- 77 (306)
.+|+|+|+ |+.|+...+.+.++ .+++++.-+. +..| +. +.|. +++.
T Consensus 2 ikVgInG~-G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 2 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 47999999 99999999988876 4567643321 1111 11 3332 2332
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+.++++- +.++|+++.++|.....+.+...++.|++.|++ |.-+.
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~i-Sap~r 126 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI-TAPGK 126 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEE-SSCCB
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEE-CCccc
Confidence 4555531 124999999999999999999999999998775 65554
|
| >2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus influenzae; hypothetical protein, structural genomics, PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=0.057 Score=49.18 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
.+++|+|+ |..|+..+..++.. .+++++..++..-++.+.|.|++. .+|+... +.|-++++..- .-.++=.+
T Consensus 2 ~~~~I~g~-~~~~~~a~n~~~~~~~~~~~~i~~~~~~dk~a~~idg~~v~s-~~~i~~~-e~DyiiIa~~~-~~~qi~~~ 77 (306)
T 2g6t_A 2 YKCLIWGV-NDEYTLAYDKLLFEISKGNLSIEALISKDKYAKYIDGKEVID-KTEISNY-EFDYIIIFNKE-RYSDIKNE 77 (306)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHHHHTTSEEEEEEECSSCSCSBSSSCBEEC-GGGGGGS-CCSEEEECCTT-THHHHHHH
T ss_pred ceEEEEec-cHHHHHHHHHHHHHhhcccceEEEEecchhhhhhhCCeeccC-HHHHhcC-CCCEEEEeccc-cHHHHHHH
Confidence 47999999 77777776655443 477888888876678899999998 5666543 59999999865 56777778
Q ss_pred HHHcCCCEEEEecCCC---ChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 107 ALDAEMPLIVCITEGI---PQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf---~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
+++.||+.==+++..+ +..+.++.. .-+..++.|+..||.|-.-.
T Consensus 78 l~~~gi~~~ki~~~~~~~i~~~~~~r~~--rL~N~~~TIISnNC~Gg~iy 125 (306)
T 2g6t_A 78 ALELGIPERKILNGKFFFISNFDFKRYC--KLIENPITIISDDCWGGLVS 125 (306)
T ss_dssp HHHTTCCGGGEECSGGGGSTTCCHHHHH--HHHHTTCEEEESSSHHHHHH
T ss_pred HHHcCCchhheeeeEEEecccccHHHHH--HhcCCCcEEEecCchhHHHH
Confidence 8899987544444422 222333322 24788999999999875543
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=95.18 E-value=0.023 Score=52.73 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|+|+|+ |++|+...+.+...|++++ .+|++....+ ..|+... +++++... .|++++++|..
T Consensus 155 g~~vgIIG~-G~iG~~iA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~~~-~l~e~l~~--aDvVi~~vp~~ 221 (330)
T 2gcg_A 155 QSTVGIIGL-GRIGQAIARRLKPFGVQRF-LYTGRQPRPEEAAEFQAEFV-STPELAAQ--SDFIVVACSLT 221 (330)
T ss_dssp TCEEEEECC-SHHHHHHHHHHGGGTCCEE-EEESSSCCHHHHHTTTCEEC-CHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EECCCCcchhHHHhcCceeC-CHHHHHhh--CCEEEEeCCCC
Confidence 568999999 9999999999999999975 5665431111 1244433 78888766 89999999975
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0092 Score=56.87 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
.++|+|+|. |++|+...+.++.+|++++ ..||.. ....+...+.+++++..+ .|++++++|..
T Consensus 119 gktvGIIGl-G~IG~~vA~~l~a~G~~V~-~~d~~~--~~~~~~~~~~sl~ell~~--aDiV~l~~Plt 181 (381)
T 3oet_A 119 DRTIGIVGV-GNVGSRLQTRLEALGIRTL-LCDPPR--AARGDEGDFRTLDELVQE--ADVLTFHTPLY 181 (381)
T ss_dssp GCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHH--HHTTCCSCBCCHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EECCCh--HHhccCcccCCHHHHHhh--CCEEEEcCcCC
Confidence 578999999 9999999999999999976 667743 111122357789999887 99999999844
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.042 Score=45.76 Aligned_cols=108 Identities=13% Similarity=0.124 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-ce--ecCeecc-CC------HHhh-hhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-KT--HLDLPVF-NT------VKEA-RDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~~--i~Gip~y-~s------l~el-~~~~~iDlavi~vp~ 97 (306)
..+|+|+|+ |++|+...+.|.+. |++++ .++.+... +. ..|..++ .+ +.++ .- .+.|++++++|.
T Consensus 39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~-vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~-~~ad~vi~~~~~ 115 (183)
T 3c85_A 39 HAQVLILGM-GRIGTGAYDELRARYGKISL-GIEIREEAAQQHRSEGRNVISGDATDPDFWERILDT-GHVKLVLLAMPH 115 (183)
T ss_dssp TCSEEEECC-SHHHHHHHHHHHHHHCSCEE-EEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSC-CCCCEEEECCSS
T ss_pred CCcEEEECC-CHHHHHHHHHHHhccCCeEE-EEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCC-CCCCEEEEeCCC
Confidence 357999998 99999999999998 99876 56554310 01 1244432 22 2332 11 248999999996
Q ss_pred hhH-HHHHHHHHHcC-CCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 98 PGA-AKAIHEALDAE-MPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 98 ~~~-~~~~~e~~~~G-i~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
... ..++..+.+.+ ...++..+.+ .+. .+ ..++.|+ .++.|..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~ii~~~~~--~~~-~~----~l~~~G~~~vi~p~~ 161 (183)
T 3c85_A 116 HQGNQTALEQLQRRNYKGQIAAIAEY--PDQ-LE----GLLESGVDAAFNIYS 161 (183)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEESS--HHH-HH----HHHHHTCSEEEEHHH
T ss_pred hHHHHHHHHHHHHHCCCCEEEEEECC--HHH-HH----HHHHcCCCEEEchHH
Confidence 554 44455555666 4445543332 221 11 2345566 5666654
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.04 Score=53.88 Aligned_cols=83 Identities=11% Similarity=0.021 Sum_probs=59.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CC---eEEEeeCCCCCCcee---cCeecc-----CC-----HHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GT---KVVGGVSPGKGGKTH---LDLPVF-----NT-----VKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~---~vv~~VnP~~~g~~i---~Gip~y-----~s-----l~el~~~~~iDlav 92 (306)
..+|.|+|+ |.+|+.+.+.+.+. ++ +++ .++|...+.++ .|++.. .+ ++++..+ .|++|
T Consensus 13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~--~DvVI 88 (480)
T 2ph5_A 13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEE--NDFLI 88 (480)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCT--TCEEE
T ss_pred CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEE-EeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcC--CCEEE
Confidence 467999998 99999998877664 66 343 67776533321 243322 22 3334443 59999
Q ss_pred EecCchhHHHHHHHHHHcCCCEEE
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vv 116 (306)
-..++.....+++.|++.|+..+=
T Consensus 89 N~s~~~~~l~Im~acleaGv~YlD 112 (480)
T 2ph5_A 89 DVSIGISSLALIILCNQKGALYIN 112 (480)
T ss_dssp ECCSSSCHHHHHHHHHHHTCEEEE
T ss_pred ECCccccCHHHHHHHHHcCCCEEE
Confidence 999999999999999999999743
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.06 Score=52.46 Aligned_cols=106 Identities=8% Similarity=0.067 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-cee---cCeec----c---CCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-KTH---LDLPV----F---NTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~~i---~Gip~----y---~sl~el~~~~~iDlavi~vp~ 97 (306)
.++|+|+|+ |..|+.+.+.|.+. ++++ ..++++... +++ .++.. + .++.++... +|++|.++|.
T Consensus 23 ~k~VlIiGA-GgiG~aia~~L~~~~g~~V-~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~--~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGS-GFVAQPVIDTLAANDDINV-TVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLAD--NDVVISLIPY 98 (467)
T ss_dssp CEEEEEECC-STTHHHHHHHHHTSTTEEE-EEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHT--SSEEEECSCG
T ss_pred CCEEEEECC-hHHHHHHHHHHHhCCCCeE-EEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcC--CCEEEECCch
Confidence 468999998 99999999999887 7774 366654210 111 23321 1 134444444 9999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.....+.+.|++.|+..+- .+ -+.+ +..++. +.|++.|+.++
T Consensus 99 ~~~~~v~~a~l~~g~~vvd-~~-~~~p-~~~~Ll-~~Ak~aGv~~i 140 (467)
T 2axq_A 99 TFHPNVVKSAIRTKTDVVT-SS-YISP-ALRELE-PEIVKAGITVM 140 (467)
T ss_dssp GGHHHHHHHHHHHTCEEEE-CS-CCCH-HHHHHH-HHHHHHTCEEE
T ss_pred hhhHHHHHHHHhcCCEEEE-ee-cCCH-HHHHHH-HHHHHcCCEEE
Confidence 8777888999999887543 22 2232 223333 35777787655
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.022 Score=52.09 Aligned_cols=89 Identities=11% Similarity=0.061 Sum_probs=59.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCeeccC----------CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDLPVFN----------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gip~y~----------sl~el~~~~~iDlavi~vp~ 97 (306)
++|+|+|+ |.+|......|. .|.++. .++++... +.+ .|+.+.. .-++... +.|+++++|++
T Consensus 3 mkI~IiGa-Ga~G~~~a~~L~-~g~~V~-~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~--~~D~vilavK~ 77 (307)
T 3ego_A 3 LKIGIIGG-GSVGLLCAYYLS-LYHDVT-VVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINS--DFDLLVVTVKQ 77 (307)
T ss_dssp CEEEEECC-SHHHHHHHHHHH-TTSEEE-EECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCS--CCSEEEECCCG
T ss_pred CEEEEECC-CHHHHHHHHHHh-cCCceE-EEECCHHHHHHHHhCCceEecCCCeecccccccccccC--CCCEEEEEeCH
Confidence 68999999 999998888888 888765 56654200 111 2333221 0012222 48999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCCh
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQ 124 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e 124 (306)
....++++++...+-+.|+.++.|+..
T Consensus 78 ~~~~~~l~~l~~~~~~~ivs~~nGi~~ 104 (307)
T 3ego_A 78 HQLQSVFSSLERIGKTNILFLQNGMGH 104 (307)
T ss_dssp GGHHHHHHHTTSSCCCEEEECCSSSHH
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCccH
Confidence 999999988765444446778889854
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.012 Score=52.53 Aligned_cols=101 Identities=14% Similarity=-0.003 Sum_probs=63.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHH---HHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAA---KAI 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~---~~~ 104 (306)
+|+|+|+ |.+|+...+.+.+.|+++ ...|++... ++ ..|.. +.+++++ .+ .|+++.++|+...+ ..+
T Consensus 118 ~v~iiG~-G~~g~~~a~~l~~~g~~v-~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~--~Divi~~tp~~~~~~~~~~l 191 (263)
T 2d5c_A 118 PALVLGA-GGAGRAVAFALREAGLEV-WVWNRTPQRALALAEEFGLR-AVPLEKA-RE--ARLLVNATRVGLEDPSASPL 191 (263)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCE-EEECSSHHHHHHHHHHHTCE-ECCGGGG-GG--CSEEEECSSTTTTCTTCCSS
T ss_pred eEEEECC-cHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHHHHhccc-hhhHhhc-cC--CCEEEEccCCCCCCCCCCCC
Confidence 8999999 999999999999999864 477876311 11 12444 6778888 65 99999999988543 222
Q ss_pred -HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 -HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 -~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.++++.|. .++-++.+..+. ++. +.+++.|.+++
T Consensus 192 ~~~~l~~g~-~viD~~~~p~~t---~l~-~~a~~~g~~~v 226 (263)
T 2d5c_A 192 PAELFPEEG-AAVDLVYRPLWT---RFL-REAKAKGLKVQ 226 (263)
T ss_dssp CGGGSCSSS-EEEESCCSSSSC---HHH-HHHHHTTCEEE
T ss_pred CHHHcCCCC-EEEEeecCCccc---HHH-HHHHHCcCEEE
Confidence 23333343 233333332222 233 35678888877
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.022 Score=56.32 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~~e 106 (306)
.++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+... +++++..+ .|++++++|.. .+..++.+
T Consensus 142 g~~vgIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~g~~~~-~l~e~~~~--aDvV~l~~P~~~~t~~~i~~ 216 (529)
T 1ygy_A 142 GKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIELL-SLDDLLAR--ADFISVHLPKTPETAGLIDK 216 (529)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCEEC-CHHHHHHH--CSEEEECCCCSTTTTTCBCH
T ss_pred CCEEEEEee-CHHHHHHHHHHHhCCCEEE-EECCCCChhHHHhcCcEEc-CHHHHHhc--CCEEEECCCCchHHHHHhCH
Confidence 578999999 9999999999999999976 678764111 12365544 78888876 99999999987 66666654
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.033 Score=51.81 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
-++|+|+|. |++|+...+.++.+|++++ ..|+.... ....+...+.+++++..+ .|++++++|.
T Consensus 140 g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~dr~~~~~~~~~~~~~~~~l~ell~~--aDvV~l~lPl 204 (324)
T 3hg7_A 140 GRTLLILGT-GSIGQHIAHTGKHFGMKVL-GVSRSGRERAGFDQVYQLPALNKMLAQ--ADVIVSVLPA 204 (324)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCCCTTCSEEECGGGHHHHHHT--CSEEEECCCC
T ss_pred cceEEEEEE-CHHHHHHHHHHHhCCCEEE-EEcCChHHhhhhhcccccCCHHHHHhh--CCEEEEeCCC
Confidence 578999999 9999999999999999976 56665311 112223345689999876 9999999995
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.081 Score=42.77 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=62.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--ce-----ecCeecc-CC------HHhhhhcCCCcEEEEec
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--KT-----HLDLPVF-NT------VKEARDATGAEATVIYV 95 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~~-----i~Gip~y-~s------l~el~~~~~iDlavi~v 95 (306)
.++|+|+|+ |+.|+...+.|.+.|++++ .++++... +. -.|++++ .+ +.++.- .+.|++++++
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~-vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~ 79 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVT-VISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGI-DRCRAILALS 79 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTT-TTCSEEEECS
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcCh-hhCCEEEEec
Confidence 467999998 9999999999999999876 56554100 01 1234333 12 333211 2489999999
Q ss_pred CchhHHHHH-HHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 96 PPPGAAKAI-HEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 96 p~~~~~~~~-~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
+.+.....+ ..+.+. +...++....+.. . .+ ..++.|. .++.|.-
T Consensus 80 ~~d~~n~~~~~~a~~~~~~~~ii~~~~~~~--~-~~----~l~~~G~~~vi~p~~ 127 (153)
T 1id1_A 80 DNDADNAFVVLSAKDMSSDVKTVLAVSDSK--N-LN----KIKMVHPDIILSPQL 127 (153)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCEEEECSSGG--G-HH----HHHTTCCSEEECHHH
T ss_pred CChHHHHHHHHHHHHHCCCCEEEEEECCHH--H-HH----HHHHcCCCEEEcHHH
Confidence 876655444 334444 5555665444321 1 11 2255676 5666643
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.011 Score=53.78 Aligned_cols=93 Identities=16% Similarity=0.042 Sum_probs=60.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---cCe---eccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---LDL---PVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---~Gi---p~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |.+|......|.+.|.++. .++++..+-+. .|. ++..+..+... .+.|+++++||+....+++
T Consensus 3 mkI~iiGa-Ga~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~D~vilavk~~~~~~~l 79 (294)
T 3g17_A 3 LSVAIIGP-GAVGTTIAYELQQSLPHTT-LIGRHAKTITYYTVPHAPAQDIVVKGYEDVT-NTFDVIIIAVKTHQLDAVI 79 (294)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHCTTCE-EEESSCEEEEEESSTTSCCEEEEEEEGGGCC-SCEEEEEECSCGGGHHHHG
T ss_pred cEEEEECC-CHHHHHHHHHHHHCCCeEE-EEEeccCcEEEEecCCeeccceecCchHhcC-CCCCEEEEeCCccCHHHHH
Confidence 57999999 9999988888888888754 45544311111 231 22222223221 2489999999999999999
Q ss_pred HHHHHc-CC-CEEEEecCCCChhH
Q psy8894 105 HEALDA-EM-PLIVCITEGIPQLD 126 (306)
Q Consensus 105 ~e~~~~-Gi-~~vvi~t~Gf~e~~ 126 (306)
+++... +- ..|+.++.|+..++
T Consensus 80 ~~l~~~l~~~~~iv~~~nGi~~~~ 103 (294)
T 3g17_A 80 PHLTYLAHEDTLIILAQNGYGQLE 103 (294)
T ss_dssp GGHHHHEEEEEEEEECCSSCCCGG
T ss_pred HHHHHhhCCCCEEEEeccCcccHh
Confidence 887653 22 24566788986543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.92 E-value=0.052 Score=47.95 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=57.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCcee--cCeecc-------CCHHhhhhcCCCcEEEEecCc--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGKTH--LDLPVF-------NTVKEARDATGAEATVIYVPP-- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~~i--~Gip~y-------~sl~el~~~~~iDlavi~vp~-- 97 (306)
++|.|.|++|..|+...+.|.+. |+++++.........+. .++.++ .++.++.+ ++|+++-+...
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~~ 78 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFA--GVSKLLFISGPHY 78 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTT--TCSEEEECCCCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHh--cCCEEEEcCCCCc
Confidence 46999999999999999999887 89877544321101111 133222 12444444 49999877643
Q ss_pred ------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 107 (287)
T 2jl1_A 79 DNTLLIVQHANVVKAARDAGVKHIAYTGY 107 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 24566788888899988887665
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.051 Score=48.85 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-----------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP----------- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~----------- 98 (306)
.++|.|.|++|-.|+...+.|.+.|++++. +..+.. .++.-..++.++.+..++|++|-+....
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~-~~r~~~----~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~ 77 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELV-LRTRDE----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPA 77 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEE-CCCTTT----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEE-EecCcc----CCccCHHHHHHHHHhcCCCEEEEcCeecCCcchhhhCHH
Confidence 368999999999999999999999999764 333221 1111223455655522499998765321
Q ss_pred --------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+++.++.+++
T Consensus 78 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 107 (321)
T 1e6u_A 78 DFIYQNMMIESNIIHAAHQNDVNKLLFLGS 107 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2345678888889988876665
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.017 Score=55.07 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
..++|+|||. |++|+...+.++.+|++++ ..||... ..-.|. .+.+++++..+ .|++++++|...
T Consensus 115 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~-~~~~g~-~~~~l~ell~~--aDvV~l~~Plt~ 179 (380)
T 2o4c_A 115 AERTYGVVGA-GQVGGRLVEVLRGLGWKVL-VCDPPRQ-AREPDG-EFVSLERLLAE--ADVISLHTPLNR 179 (380)
T ss_dssp GGCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECHHHH-HHSTTS-CCCCHHHHHHH--CSEEEECCCCCS
T ss_pred CCCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCChh-hhccCc-ccCCHHHHHHh--CCEEEEeccCcc
Confidence 3578999999 9999999999999999976 5776431 111232 46789999876 999999998654
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.019 Score=51.69 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.++|+|+|+ |.+|+...+.|.+.|+++ ..+|++... + +..|+.++++++++..+ .|++|.++|+...
T Consensus 128 ~~~~v~iiGa-G~~g~aia~~L~~~g~~V-~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~--aDiVi~atp~~~~ 199 (275)
T 2hk9_A 128 KEKSILVLGA-GGASRAVIYALVKEGAKV-FLWNRTKEKAIKLAQKFPLEVVNSPEEVIDK--VQVIVNTTSVGLK 199 (275)
T ss_dssp GGSEEEEECC-SHHHHHHHHHHHHHTCEE-EEECSSHHHHHHHTTTSCEEECSCGGGTGGG--CSEEEECSSTTSS
T ss_pred CCCEEEEECc-hHHHHHHHHHHHHcCCEE-EEEECCHHHHHHHHHHcCCeeehhHHhhhcC--CCEEEEeCCCCCC
Confidence 3578999998 999999999999989854 477876310 1 12366677778777765 9999999998764
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.048 Score=50.84 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC--------c--------e---------ecC--eeccC--CHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG--------K--------T---------HLD--LPVFN--TVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g--------~--------~---------i~G--ip~y~--sl~ 80 (306)
.+|+|+|+ |+.|+...+.+.++ .+++++.-+....+ + + +.| ++++. +.+
T Consensus 2 ikVgI~G~-G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (330)
T 1gad_O 2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 80 (330)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECc-CHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChh
Confidence 47999997 99999999988876 67887654331101 0 0 111 12343 356
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
+++- ..++|+++.++|.....+.+...++.|+|.|+ +|..|
T Consensus 81 ~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVd-lSa~~ 122 (330)
T 1gad_O 81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVV-MTGPS 122 (330)
T ss_dssp GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEE-ESSCC
T ss_pred hCccccccCCEEEECCCccccHHHHHHHHHCCCEEEE-ECCCC
Confidence 6641 12499999999999999999999999999876 57666
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.018 Score=54.23 Aligned_cols=66 Identities=11% Similarity=0.127 Sum_probs=52.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+..+.+++++..+ .|++++++|..
T Consensus 159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~g~~~~~~l~ell~~--aDiV~l~~Plt 226 (352)
T 3gg9_A 159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVL-VWGRENSKERARADGFAVAESKDALFEQ--SDVLSVHLRLN 226 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSHHHHHHHHHTTCEECSSHHHHHHH--CSEEEECCCCS
T ss_pred CCCEEEEEeE-CHHHHHHHHHHHhCCCEEE-EECCCCCHHHHHhcCceEeCCHHHHHhh--CCEEEEeccCc
Confidence 3578999999 9999999999999999976 677753101 13477666789999887 99999999854
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.061 Score=49.88 Aligned_cols=188 Identities=12% Similarity=0.063 Sum_probs=101.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCC-cee---cCeecc-CC-------HHhhhhcCCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGG-KTH---LDLPVF-NT-------VKEARDATGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g-~~i---~Gip~y-~s-------l~el~~~~~iDlavi~vp 96 (306)
.++|.|.|++|..|+...+.|.+.|+++++... +.... ..+ .++.++ -+ +.++.+ ++|+++.+..
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEcCC
Confidence 468999999999999999999999999875543 22100 000 122221 12 344444 4999987654
Q ss_pred ch------hHHHHHHHHHHcC-CCEEEEecCCC-Chh---------HHHHHHHHHHHhcCC--eEEccCCCceecCcccc
Q psy8894 97 PP------GAAKAIHEALDAE-MPLIVCITEGI-PQL---------DMVKVKHRLIRQSKS--RLIGPNCPGIIAPEQCK 157 (306)
Q Consensus 97 ~~------~~~~~~~e~~~~G-i~~vvi~t~Gf-~e~---------~~~~~~~~~ar~~gi--~iiGPNc~Gi~~~~~~~ 157 (306)
.. ....+++.|.+.| ++.++.+|+.. .+. ......++++++.++ .++=|+ ++-+....
T Consensus 83 ~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~gi~~~ivrpg---~~g~~~~~ 159 (352)
T 1xgk_A 83 SQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAG---IYNNNFTS 159 (352)
T ss_dssp STTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEEEEEEC---EEGGGCBS
T ss_pred CCCcHHHHHHHHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHcCCCEEEEecc---eecCCchh
Confidence 32 3466778888889 98888777643 110 112222345677675 333343 33322110
Q ss_pred c--cCC-----CCCC-----C--CCCCEEEEecChhhHHHHHHHHHhCC---CceEEEEecCCCCCCCCCHHHHHHHhhc
Q psy8894 158 I--GIM-----PGHI-----H--QRGCVGVVSRSGTLTYEAVHQTTQVG---LGQTLCVGIGGDPFNGTNFIDCLEVFLK 220 (306)
Q Consensus 158 ~--~~~-----~~~~-----~--~~G~va~vSqSG~~~~~~~~~~~~~g---~g~s~~vs~Gn~~~~dv~~~d~l~~l~~ 220 (306)
. ..+ .... + ..+.+.+++--.-++..++..+.... .|-.+.++ ++ . +++.|+++.+.+
T Consensus 160 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~--~~--~-~s~~e~~~~i~~ 234 (352)
T 1xgk_A 160 LPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT--FE--T-LSPVQVCAAFSR 234 (352)
T ss_dssp SSCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC--SE--E-ECHHHHHHHHHH
T ss_pred cccccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEe--cC--C-CCHHHHHHHHHH
Confidence 0 000 0000 1 22456666532455555554444320 34455555 34 3 899999998887
Q ss_pred CCCccEE
Q psy8894 221 DPETKGI 227 (306)
Q Consensus 221 D~~t~~I 227 (306)
--..+.-
T Consensus 235 ~~G~~~~ 241 (352)
T 1xgk_A 235 ALNRRVT 241 (352)
T ss_dssp HHTSCEE
T ss_pred HHCCCCc
Confidence 4444443
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.071 Score=51.61 Aligned_cols=106 Identities=13% Similarity=0.087 Sum_probs=65.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecCeec-------cCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLDLPV-------FNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~Gip~-------y~sl~el~~~~~iDlavi~vp~ 97 (306)
.++|+|+|+ |.+|+.+.+.|.+.|++++ .++.+... + ...++.. +.++.++.+ ++|++|.++|.
T Consensus 3 ~k~VlViGa-G~iG~~ia~~L~~~G~~V~-v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~ 78 (450)
T 1ff9_A 3 TKSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPY 78 (450)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEE-EEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCcCEEE-EEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCcc
Confidence 368999995 9999999999998898854 55543200 0 1112211 113445444 49999999998
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.....+.+.|++.|.+. +. . ........++. +.|++.|++++
T Consensus 79 ~~~~~i~~a~l~~g~~v-vd-~-~~~~~~~~~l~-~aA~~aGv~~i 120 (450)
T 1ff9_A 79 TFHATVIKSAIRQKKHV-VT-T-SYVSPAMMELD-QAAKDAGITVM 120 (450)
T ss_dssp -CHHHHHHHHHHHTCEE-EE-S-SCCCHHHHHTH-HHHHHTTCEEE
T ss_pred ccchHHHHHHHhCCCeE-EE-e-ecccHHHHHHH-HHHHHCCCeEE
Confidence 77777788888888763 33 2 22223333443 46788888665
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.019 Score=53.44 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
.-++|+|+|. |++|+...+.++.+|++++ ..||.....+ ..|+. +.+++++... .|++++++|.. .+..++
T Consensus 144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~~~~~~g~~-~~~l~ell~~--aDvV~l~~P~t~~t~~li 218 (330)
T 4e5n_A 144 DNATVGFLGM-GAIGLAMADRLQGWGATLQ-YHEAKALDTQTEQRLGLR-QVACSELFAS--SDFILLALPLNADTLHLV 218 (330)
T ss_dssp TTCEEEEECC-SHHHHHHHHHTTTSCCEEE-EECSSCCCHHHHHHHTEE-ECCHHHHHHH--CSEEEECCCCSTTTTTCB
T ss_pred CCCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCCCCcHhHHHhcCce-eCCHHHHHhh--CCEEEEcCCCCHHHHHHh
Confidence 3579999999 9999999999999999976 6677531111 23554 4589999876 99999999953 333334
Q ss_pred -HHHHH-cCCCEEEE
Q psy8894 105 -HEALD-AEMPLIVC 117 (306)
Q Consensus 105 -~e~~~-~Gi~~vvi 117 (306)
++..+ ..-..+++
T Consensus 219 ~~~~l~~mk~gailI 233 (330)
T 4e5n_A 219 NAELLALVRPGALLV 233 (330)
T ss_dssp CHHHHTTSCTTEEEE
T ss_pred CHHHHhhCCCCcEEE
Confidence 23333 34444443
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.17 Score=46.22 Aligned_cols=90 Identities=19% Similarity=0.165 Sum_probs=56.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCcee-------cCeecc-------CCHHhhhhcCCCcEEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKTH-------LDLPVF-------NTVKEARDATGAEATVIY 94 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~i-------~Gip~y-------~sl~el~~~~~iDlavi~ 94 (306)
.++|.|.|++|-.|+...+.|.+.|+++++... +.. .... .++..+ .++.++.+..++|++|-+
T Consensus 9 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 87 (357)
T 1rkx_A 9 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT-VPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM 87 (357)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS-SSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcc-cchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence 468999999999999999999999999775432 221 0110 122222 123344332248999987
Q ss_pred cCch------------------hHHHHHHHHHHcC-CCEEEEecC
Q psy8894 95 VPPP------------------GAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 95 vp~~------------------~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
.... .+..+++.|.+.+ ++.++.+++
T Consensus 88 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 132 (357)
T 1rkx_A 88 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS 132 (357)
T ss_dssp CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred CCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 5421 1234677777776 888887776
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.084 Score=47.53 Aligned_cols=87 Identities=16% Similarity=0.146 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce------ecCeeccC-------CHHhhhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT------HLDLPVFN-------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~------i~Gip~y~-------sl~el~~~~~iDlavi~vp~ 97 (306)
++|+|+|++|..|+.+.+.|++.|+++++.........+ -.|+.++. ++.++.+ ++|+++.+.+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a~~ 89 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISALAF 89 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECCCG
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECCch
Confidence 579999999999999999999999997654332210011 12443332 2444444 49999988764
Q ss_pred ---hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 98 ---PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 98 ---~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
.....+++.|.+.| ++.++ ++.
T Consensus 90 ~~~~~~~~l~~aa~~~g~v~~~v-~S~ 115 (318)
T 2r6j_A 90 PQILDQFKILEAIKVAGNIKRFL-PSD 115 (318)
T ss_dssp GGSTTHHHHHHHHHHHCCCCEEE-CSC
T ss_pred hhhHHHHHHHHHHHhcCCCCEEE-eec
Confidence 45677888888888 99876 443
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.14 Score=42.86 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCCceecCeecc-CCHHhhh---hcCCCcEEEEecCch-----
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGGKTHLDLPVF-NTVKEAR---DATGAEATVIYVPPP----- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g~~i~Gip~y-~sl~el~---~~~~iDlavi~vp~~----- 98 (306)
.++|.|.|++|..|+...+.|.+.|. +++ .++.+.. ....++..+ -++.+.. +.. +|++|-+....
T Consensus 5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~-~~~r~~~-~~~~~~~~~~~D~~~~~~~~~~~-~d~vi~~a~~~~~~~~ 81 (215)
T 2a35_A 5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGS-IDTAFCCLGTTIKEAG 81 (215)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSC-CSEEEECCCCCHHHHS
T ss_pred CceEEEECCCcHHHHHHHHHHHhCCCCCeEE-EEeCCCc-ccCCCceEEeccccCHHHHHHhh-hcEEEECeeeccccCC
Confidence 46899999999999999999999987 776 4443321 122233333 2444432 222 79998876432
Q ss_pred -----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.|++.++.+++
T Consensus 82 ~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss 114 (215)
T 2a35_A 82 SEEAFRAVDFDLPLAVGKRALEMGARHYLVVSA 114 (215)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3456778888889998877666
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.082 Score=51.66 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-----------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP----------- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~----------- 98 (306)
+++|.|.|++|-.|+.+.+.|++.|+++++.+........+.+- .-..+.++.+ ++|++|-+....
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d-~~~~~~~~l~--~~D~Vih~A~~~~~~~~~~~~~~ 223 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWD-PLNPASDLLD--GADVLVHLAGEPIFGRFNDSHKE 223 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECC-TTSCCTTTTT--TCSEEEECCCC-----CCGGGHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeec-ccchhHHhcC--CCCEEEECCCCccccccchhHHH
Confidence 78999999999999999999999999987554332211122110 1122333333 499998764321
Q ss_pred --------hHHHHHHH-HHHcCCCEEEEecC
Q psy8894 99 --------GAAKAIHE-ALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------~~~~~~~e-~~~~Gi~~vvi~t~ 120 (306)
.+..+++. +.+.|++.++.+++
T Consensus 224 ~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS 254 (516)
T 3oh8_A 224 AIRESRVLPTKFLAELVAESTQCTTMISASA 254 (516)
T ss_dssp HHHHHTHHHHHHHHHHHHHCSSCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14455666 44568888776554
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.034 Score=52.60 Aligned_cols=105 Identities=9% Similarity=0.092 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH-H
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI-H 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~-~ 105 (306)
-++|+|+|. |++|+...+.++.+|++++ ..||..... ...|+. +.+++++..+ .|++++++|.. .+..++ +
T Consensus 176 gktvGIIGl-G~IG~~vA~~l~~fG~~V~-~~d~~~~~~~~~~~g~~-~~~l~ell~~--aDvV~l~~Plt~~T~~li~~ 250 (365)
T 4hy3_A 176 GSEIGIVGF-GDLGKALRRVLSGFRARIR-VFDPWLPRSMLEENGVE-PASLEDVLTK--SDFIFVVAAVTSENKRFLGA 250 (365)
T ss_dssp SSEEEEECC-SHHHHHHHHHHTTSCCEEE-EECSSSCHHHHHHTTCE-ECCHHHHHHS--CSEEEECSCSSCC---CCCH
T ss_pred CCEEEEecC-CcccHHHHHhhhhCCCEEE-EECCCCCHHHHhhcCee-eCCHHHHHhc--CCEEEEcCcCCHHHHhhcCH
Confidence 579999999 9999999999999999976 677763111 124554 5689999887 99999999964 333333 2
Q ss_pred HHH-HcCCCEEE-EecCCCChhHHHHHHHHHHHhcCCe
Q psy8894 106 EAL-DAEMPLIV-CITEGIPQLDMVKVKHRLIRQSKSR 141 (306)
Q Consensus 106 e~~-~~Gi~~vv-i~t~Gf~e~~~~~~~~~~ar~~gi~ 141 (306)
+.. ..+-..++ +.+.|-. -+.+++.+ ..++..+.
T Consensus 251 ~~l~~mk~gailIN~aRG~~-vde~aL~~-aL~~g~i~ 286 (365)
T 4hy3_A 251 EAFSSMRRGAAFILLSRADV-VDFDALMA-AVSSGHIV 286 (365)
T ss_dssp HHHHTSCTTCEEEECSCGGG-SCHHHHHH-HHHTTSSE
T ss_pred HHHhcCCCCcEEEECcCCch-hCHHHHHH-HHHcCCce
Confidence 333 34444444 3444422 22233433 34555554
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.041 Score=50.81 Aligned_cols=88 Identities=10% Similarity=0.144 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--cC-------------eeccCCHHhhhhcCCCcEEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--LD-------------LPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--~G-------------ip~y~sl~el~~~~~iDlavi~ 94 (306)
.++|+|+|+ |.+|......|.+.|+++. .+++...-+.+ .| +++..+++++ . +.|+++++
T Consensus 3 ~mkI~IiGa-G~~G~~~a~~L~~~g~~V~-~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~Vila 77 (335)
T 3ghy_A 3 LTRICIVGA-GAVGGYLGARLALAGEAIN-VLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-G--EQDVVIVA 77 (335)
T ss_dssp CCCEEEESC-CHHHHHHHHHHHHTTCCEE-EECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-C--CCSEEEEC
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCEEE-EEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-C--CCCEEEEe
Confidence 368999999 9999999889988898865 55542100110 12 2334567765 3 38999999
Q ss_pred cCchhHHHHHHHHHHc-C-CCEEEEecCCC
Q psy8894 95 VPPPGAAKAIHEALDA-E-MPLIVCITEGI 122 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~-G-i~~vvi~t~Gf 122 (306)
+|+....++++++... + =..++.++.|+
T Consensus 78 vk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 78 VKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp CCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred CCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 9999888888776542 2 23455578896
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.037 Score=49.13 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh--------
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG-------- 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-------- 99 (306)
..+++|.|.|++|-.|+...+.|.+.|+++++ ++.+. .. +.-..++.++.+..++|++|-+.....
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~--~D---l~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~ 83 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVIP-TDVQD--LD---ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQY 83 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEEE-ECTTT--CC---TTCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCH
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEEe-ccCcc--CC---CCCHHHHHHHHHhcCCCEEEECCccCCHHHHhcCH
Confidence 45789999999999999999999999998774 44432 11 112234555554224999987654211
Q ss_pred ----------HHHHHHHHHHcCCCEEEEecC
Q psy8894 100 ----------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 100 ----------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+..+++.|.+.|+ .++.+++
T Consensus 84 ~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS 113 (292)
T 1vl0_A 84 DLAYKINAIGPKNLAAAAYSVGA-EIVQIST 113 (292)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-eEEEech
Confidence 3567788888888 5555554
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.079 Score=46.78 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=57.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCCceecCeec-------cCCHHhhhhcCCCcEEEEecC---c-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGGKTHLDLPV-------FNTVKEARDATGAEATVIYVP---P- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g~~i~Gip~-------y~sl~el~~~~~iDlavi~vp---~- 97 (306)
.++|.|.|++|-+|+...+.|.+.|++++.. .++.. .+-.++.. ..++.++.+. +|++|-+.. .
T Consensus 3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~--~D~vi~~Ag~~~~~ 78 (267)
T 3rft_A 3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLD--PAGPNEECVQCDLADANAVNAMVAG--CDGIVHLGGISVEK 78 (267)
T ss_dssp EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCC--CCCTTEEEEECCTTCHHHHHHHHTT--CSEEEECCSCCSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcc--ccCCCCEEEEcCCCCHHHHHHHHcC--CCEEEECCCCcCcC
Confidence 3689999999999999999999999987643 33322 11112222 2234455554 999987532 1
Q ss_pred ----------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ----------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ----------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.+++.++.+++
T Consensus 79 ~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 111 (267)
T 3rft_A 79 PFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111 (267)
T ss_dssp CHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 12345778888899988887775
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.098 Score=48.58 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--cCeecc-------CCHHhhhhcCCCcEEEEecCch-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--LDLPVF-------NTVKEARDATGAEATVIYVPPP- 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--~Gip~y-------~sl~el~~~~~iDlavi~vp~~- 98 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++........... .++.++ .++.++.+ ++|++|-+....
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~--~~d~Vih~A~~~~ 105 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADMG 105 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCCCC
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhC--CCCEEEECceecC
Confidence 347899999999999999999999999987543322101111 122222 12444444 499998765321
Q ss_pred ------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 106 ~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS 145 (379)
T 2c5a_A 106 GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145 (379)
T ss_dssp CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEee
Confidence 1345677888889988877665
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.094 Score=47.35 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=55.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--------eecCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--------THLDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--------~i~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
..++|.|.|++|-.|+...+.|.+.|+++++......... .-.++..+ .++.++.+...+|++|-
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 3578999999999999999999999999875543221000 00122222 12334443224799987
Q ss_pred ecCch------------------hHHHHHHHHHHcCC-CEEEEecC
Q psy8894 94 YVPPP------------------GAAKAIHEALDAEM-PLIVCITE 120 (306)
Q Consensus 94 ~vp~~------------------~~~~~~~e~~~~Gi-~~vvi~t~ 120 (306)
+.... .+..+++.|.+.|+ +.++.+++
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS 138 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST 138 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 64321 13456777888886 77776664
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.16 Score=45.54 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCeecc------CCHHhhhhcCCCcEEEEecCc-----
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLPVF------NTVKEARDATGAEATVIYVPP----- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip~y------~sl~el~~~~~iDlavi~vp~----- 97 (306)
++|.|.|++|-.|+...+.|.+.| .++...+......+ -.++..+ .++.++.+. +|+++-+...
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~d~vih~a~~~~~~~ 78 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFVNEAARLVKADLAADDIKDYLKG--AEEVWHIAANPDVRI 78 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGSCTTEEEECCCTTTSCCHHHHTT--CSEEEECCCCCCCC-
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhcCCCcEEEECcCChHHHHHHhcC--CCEEEECCCCCChhh
Confidence 479999999999999999999989 54434433221111 1112111 345555544 9999866432
Q ss_pred -------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 -------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 -------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS 114 (313)
T 3ehe_A 79 GAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTST 114 (313)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCc
Confidence 12344777888889988887776
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.033 Score=51.90 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=57.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCCce--ecC--eeccC-CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGGKT--HLD--LPVFN-TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g~~--i~G--ip~y~-sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
.+|+|+||+|..|+...+.+.+.++. ++.....+..|+. +.| ++++. +.+++ ++|+++.|+|.....+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~~~----~~DvV~~a~g~~~s~~ 76 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL----PVDLVLASAGGGISRA 76 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSSCC----CCSEEEECSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChhhc----CCCEEEECCCccchHH
Confidence 36999999999999999988865544 3222222222222 222 23332 11222 4899999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf 122 (306)
.+..+.+.|++.|. .++-|
T Consensus 77 ~a~~~~~~G~~vId-~s~~~ 95 (331)
T 2yv3_A 77 KALVWAEGGALVVD-NSSAW 95 (331)
T ss_dssp HHHHHHHTTCEEEE-CSSSS
T ss_pred HHHHHHHCCCEEEE-CCCcc
Confidence 99999999997443 56555
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.069 Score=42.36 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce--ecCeec-cCC------HHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT--HLDLPV-FNT------VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~--i~Gip~-y~s------l~el~~~~~iDlavi~vp~~~~ 100 (306)
++|+|+|+ |+.|+...+.|.+.|++++ .++.+... ++ -.|..+ +.+ +.++.. .+.|++++++|....
T Consensus 7 ~~v~I~G~-G~iG~~la~~L~~~g~~V~-~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~-~~~d~vi~~~~~~~~ 83 (141)
T 3llv_A 7 YEYIVIGS-EAAGVGLVRELTAAGKKVL-AVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDL-EGVSAVLITGSDDEF 83 (141)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCC-TTCSEEEECCSCHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCc-ccCCEEEEecCCHHH
Confidence 57999999 9999999999999999976 55544210 00 124332 222 222211 248999999986544
Q ss_pred -HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccC
Q psy8894 101 -AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPN 146 (306)
Q Consensus 101 -~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPN 146 (306)
..++..+.+.|...++.-+.. ++..+ ..++.|+ .++-|.
T Consensus 84 n~~~~~~a~~~~~~~iia~~~~--~~~~~-----~l~~~G~~~vi~p~ 124 (141)
T 3llv_A 84 NLKILKALRSVSDVYAIVRVSS--PKKKE-----EFEEAGANLVVLVA 124 (141)
T ss_dssp HHHHHHHHHHHCCCCEEEEESC--GGGHH-----HHHHTTCSEEEEHH
T ss_pred HHHHHHHHHHhCCceEEEEEcC--hhHHH-----HHHHcCCCEEECHH
Confidence 334555556675555543433 22211 2355666 455554
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.14 Score=45.67 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=54.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--ecCeecc-CCHHhh--hhcCCCcEEEEecCc--------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--HLDLPVF-NTVKEA--RDATGAEATVIYVPP-------- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--i~Gip~y-~sl~el--~~~~~iDlavi~vp~-------- 97 (306)
++|.|.|++|-.|+...+.|.+.|++++..........+ ..++..+ .++.+. .+....|++|-+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~~~~~~~ 80 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKGDVVFHFAANPEVRLSTT 80 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCCSEEEECCSSCSSSGGGS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCCCEEEECCCCCCchhhhh
Confidence 479999999999999999999999998744321110011 1122222 233221 111112888865431
Q ss_pred ----------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ----------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ----------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 81 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 113 (312)
T 3ko8_A 81 EPIVHFNENVVATFNVLEWARQTGVRTVVFASS 113 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCc
Confidence 12346778888889988887665
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=94.35 E-value=0.045 Score=48.11 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-------CHHhhhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-------TVKEARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-------sl~el~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|..|+...+.|.+.|++++. ++.+.......++..+. ++.++.+ ++|++|-+...
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~~~~~ 79 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRL-SDIVDLGAAEAHEEIVACDLADAQAVHDLVK--DCDGIIHLGGVSVERPW 79 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEE-CCSSCCCCCCTTEEECCCCTTCHHHHHHHHT--TCSEEEECCSCCSCCCH
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEE-EeCCCccccCCCccEEEccCCCHHHHHHHHc--CCCEEEECCcCCCCCCH
Confidence 57999999999999999999888988764 43322111112222221 2333333 37887765422
Q ss_pred --------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 80 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS 110 (267)
T 3ay3_A 80 NDILQANIIGAYNLYEAARNLGKPRIVFASS 110 (267)
T ss_dssp HHHHHHTHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 11345566666677776665554
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.13 Score=46.28 Aligned_cols=90 Identities=13% Similarity=0.160 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ceec-Ceecc-------CCHHhhhhcCCCcEEEEecCch---
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTHL-DLPVF-------NTVKEARDATGAEATVIYVPPP--- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i~-Gip~y-------~sl~el~~~~~iDlavi~vp~~--- 98 (306)
++|.|.|++|-.|+...+.|.+.|+++++........ +.+. ++..+ .++.++.++.++|++|-+....
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~~~ 81 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVG 81 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccCcc
Confidence 5799999999999999999999999987543322100 1111 22211 1244444422489998765321
Q ss_pred ---------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ---------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ---------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss 118 (330)
T 2c20_A 82 VSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118 (330)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2345677788889988887665
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.12 Score=46.83 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCC---ceecCeeccC-------CHHhhhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGG---KTHLDLPVFN-------TVKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g---~~i~Gip~y~-------sl~el~~~~~iDlavi~vp~- 97 (306)
.++|.|.|++|-.|+...+.|.+.|+++++... +.... .++.++..+. ++.++.++.++|++|-+...
T Consensus 20 ~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~ 99 (330)
T 2pzm_A 20 HMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAY 99 (330)
T ss_dssp CCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCccC
Confidence 368999999999999999999999999875443 21100 1112332221 24444441149999976532
Q ss_pred --------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 100 ~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS 136 (330)
T 2pzm_A 100 KDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQT 136 (330)
T ss_dssp SCTTCHHHHHHHHTHHHHHHHHHHHHHTCSEEEEEEE
T ss_pred CCccccChhHHHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 12456778888889988887664
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.029 Score=49.66 Aligned_cols=82 Identities=11% Similarity=0.077 Sum_probs=55.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh------------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG------------ 99 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~------------ 99 (306)
+|.|.|++|..|+...+.|.+.|+++++ ++... .. +.-..++.++.+..++|++|-+.....
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~-~~r~~--~D---~~d~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~ 80 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYP-FDKKL--LD---ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAY 80 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEE-ECTTT--SC---TTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEE-ecccc--cC---CCCHHHHHHHHHhcCCCEEEECCcccChHHHhcCHHHHH
Confidence 8999999999999999999988998774 44322 11 112234555555324999987643211
Q ss_pred ------HHHHHHHHHHcCCCEEEEecC
Q psy8894 100 ------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 100 ------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+..+++.|.+.|++ ++.+++
T Consensus 81 ~~n~~~~~~l~~~~~~~~~~-~v~~SS 106 (287)
T 3sc6_A 81 VINAIGARNVAVASQLVGAK-LVYIST 106 (287)
T ss_dssp HHHTHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence 34578888888997 554554
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.014 Score=47.07 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCee--ccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLP--VFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip--~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
.++|+|+|+ |.+|+...+.+.+.|++ +..++++.... +..|.. .+.++.++.+. .|+++.++|...
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~-v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~Divi~at~~~~ 92 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYK-VTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN--NDVIITATSSKT 92 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCE-EEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHT--CSEEEECSCCSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCE-EEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcC--CCEEEEeCCCCC
Confidence 679999998 99999998888888999 55777653111 112333 56678887765 999999998763
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.14 Score=46.88 Aligned_cols=85 Identities=9% Similarity=-0.019 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCceec-----------------CeeccCCHHhhhhcCCCcE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKTHL-----------------DLPVFNTVKEARDATGAEA 90 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~i~-----------------Gip~y~sl~el~~~~~iDl 90 (306)
++++|+|+|+ |.+|......+.+.|+ ++ ..+|++. +... .+....+++++ . +.|+
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V-~l~D~~~--~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~-~--~aDi 75 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADV-VLFDIAE--GIPQGKALDITHSMVMFGSTSKVIGTDDYADI-S--GSDV 75 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEE-EEECSSS--SHHHHHHHHHHHHHHHHTCCCCEEEESCGGGG-T--TCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceE-EEEeCCc--hHHHHHHHHHHhhhhhcCCCcEEEECCCHHHh-C--CCCE
Confidence 4578999999 9999988888888888 74 4666653 1111 12223455333 3 3899
Q ss_pred EEEecC----------------chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 91 TVIYVP----------------PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 91 avi~vp----------------~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+|++++ .+...++++++.+..-+.+++..+
T Consensus 76 Vi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~s 121 (317)
T 2ewd_A 76 VIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121 (317)
T ss_dssp EEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 999983 123456667766655555444333
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.42 Score=46.06 Aligned_cols=109 Identities=18% Similarity=0.228 Sum_probs=66.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee--cCeeccC-CHHhhhh-------------cCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH--LDLPVFN-TVKEARD-------------ATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i--~Gip~y~-sl~el~~-------------~~~iDlav 92 (306)
-.+.-|+|. |.+|......|.+.|++++ ++|.+..- +++ ...|+|. .++++.. ..+.|+++
T Consensus 11 ~~~~~ViGl-GyvGlp~A~~La~~G~~V~-~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 11 GSKLTVVGL-GYIGLPTSIMFAKHGVDVL-GVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp -CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred CCccEEEee-CHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 356889999 9999998899999999976 55544300 111 1345554 3444310 12489999
Q ss_pred EecCchh------------HHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCC
Q psy8894 93 IYVPPPG------------AAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKS 140 (306)
Q Consensus 93 i~vp~~~------------~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi 140 (306)
+++|... +....+...+ ..-..+++..+..+....+++.+.+.++.|.
T Consensus 89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~ 149 (431)
T 3ojo_A 89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGF 149 (431)
T ss_dssp ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTC
T ss_pred EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCC
Confidence 9999875 4555555554 2345566667777655445544444455554
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.091 Score=44.52 Aligned_cols=86 Identities=19% Similarity=0.173 Sum_probs=50.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--cCeecc-CCHHh----hhhcCCCcEEEEecCc------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--LDLPVF-NTVKE----ARDATGAEATVIYVPP------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--~Gip~y-~sl~e----l~~~~~iDlavi~vp~------ 97 (306)
++|.|.|++|..|+...+.|.+.|++++...-......+. .++..+ -++.+ ... ++|++|-+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~--~~d~vi~~ag~~~~~~~ 78 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLD--SVDAVVDALSVPWGSGR 78 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHT--TCSEEEECCCCCTTSSC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcc--cCCEEEECCccCCCcch
Confidence 3699999999999999999999999977443211000000 122222 13322 222 37888776533
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEec
Q psy8894 98 -----PGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 98 -----~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
..+..+++.|.+.| +.++.++
T Consensus 79 ~~~n~~~~~~l~~a~~~~~-~~~v~~S 104 (224)
T 3h2s_A 79 GYLHLDFATHLVSLLRNSD-TLAVFIL 104 (224)
T ss_dssp THHHHHHHHHHHHTCTTCC-CEEEEEC
T ss_pred hhHHHHHHHHHHHHHHHcC-CcEEEEe
Confidence 23445556666667 5566554
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.12 Score=45.90 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=53.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCCc---eecCeeccC------CHHhhhhc---CCCcEEEEecCch
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGGK---THLDLPVFN------TVKEARDA---TGAEATVIYVPPP 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g~---~i~Gip~y~------sl~el~~~---~~iDlavi~vp~~ 98 (306)
+|.|.|++|-.|+...+.|.+.| +++++...... .. ...++.+.. ++.++.+. .++|++|-+....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 79 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSS-GGGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCC-CchhhhcCcceeccccccHHHHHHHHhccccCCCcEEEECcccc
Confidence 48999999999999999999999 78764433221 11 111221111 23444331 1389998765321
Q ss_pred ----------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|+ .++.+++
T Consensus 80 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS 116 (310)
T 1eq2_A 80 STTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS 116 (310)
T ss_dssp CTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred cCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEee
Confidence 14567788888888 4554554
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.04 Score=51.43 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=58.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHH--HH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKA--IH 105 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~--~~ 105 (306)
-+++.|+|. |+.|+...+.++.+|++++ ..||..... ...++ .|.+++++..+ .|++++.+|-.. +..+ -+
T Consensus 141 g~tvGIiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~-~~~~l~ell~~--sDivslh~Plt~~T~~li~~~ 215 (334)
T 3kb6_A 141 RLTLGVIGT-GRIGSRVAMYGLAFGMKVL-CYDVVKREDLKEKGC-VYTSLDELLKE--SDVISLHVPYTKETHHMINEE 215 (334)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-EECCHHHHHHH--CSEEEECCCCCTTTTTCBCHH
T ss_pred CcEEEEECc-chHHHHHHHhhcccCceee-ecCCccchhhhhcCc-eecCHHHHHhh--CCEEEEcCCCChhhccCcCHH
Confidence 578999999 9999999999999999987 567754111 11233 36789999987 999999988532 2222 24
Q ss_pred HHHHcCCCEEEE
Q psy8894 106 EALDAEMPLIVC 117 (306)
Q Consensus 106 e~~~~Gi~~vvi 117 (306)
+...+.-.+++|
T Consensus 216 ~l~~mk~~a~lI 227 (334)
T 3kb6_A 216 RISLMKDGVYLI 227 (334)
T ss_dssp HHHHSCTTEEEE
T ss_pred HHhhcCCCeEEE
Confidence 444555565554
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.1 Score=48.40 Aligned_cols=90 Identities=14% Similarity=0.095 Sum_probs=57.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCCc-e---ecCeeccC-C------HHhhhhcCCCcEEEEecC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGGK-T---HLDLPVFN-T------VKEARDATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g~-~---i~Gip~y~-s------l~el~~~~~iDlavi~vp 96 (306)
+.++|.|.|++|-.|+...+.|.+.| +++++......... . ..++..+. + +.++.+ ++|++|-+..
T Consensus 31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~--~~d~Vih~A~ 108 (377)
T 2q1s_A 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQD--EYDYVFHLAT 108 (377)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCS--CCSEEEECCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhh--CCCEEEECCC
Confidence 34789999999999999999999999 99875432211000 0 12333222 2 333333 4999997654
Q ss_pred ch------------------hHHHHHHHHHHc-CCCEEEEecC
Q psy8894 97 PP------------------GAAKAIHEALDA-EMPLIVCITE 120 (306)
Q Consensus 97 ~~------------------~~~~~~~e~~~~-Gi~~vvi~t~ 120 (306)
.. .+..+++.|.+. +++.++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS 151 (377)
T 2q1s_A 109 YHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAA 151 (377)
T ss_dssp CSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEE
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence 32 234566777777 8988776665
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.13 Score=46.19 Aligned_cols=91 Identities=13% Similarity=0.183 Sum_probs=55.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeecc-------CCHHhhhhcCCCcEEEEecCchh-
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVF-------NTVKEARDATGAEATVIYVPPPG- 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y-------~sl~el~~~~~iDlavi~vp~~~- 99 (306)
.+.++|.|.|++|-.|+...+.|.+.|+++++...... ... .++..+ .++.++.+...+|++|-+.....
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~-~~~-l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~ 87 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNE-AKL-PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSV 87 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTT-CCC-TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc-ccc-ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcccch
Confidence 45688999999999999999999999999875433221 111 122222 12334433224899997654211
Q ss_pred -----------------HHHHHHHHHHc-CCCEEEEecC
Q psy8894 100 -----------------AAKAIHEALDA-EMPLIVCITE 120 (306)
Q Consensus 100 -----------------~~~~~~e~~~~-Gi~~vvi~t~ 120 (306)
+..+++.|.+. +++.++.+++
T Consensus 88 ~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 126 (321)
T 2pk3_A 88 KDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGS 126 (321)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcc
Confidence 34566777555 6888877665
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.1 Score=47.61 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=58.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee------------cCeecc-------CCHHhhhhcCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH------------LDLPVF-------NTVKEARDATGA 88 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i------------~Gip~y-------~sl~el~~~~~i 88 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++........ ... .++..+ .++.++.+ ++
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~ 103 (352)
T 1sb8_A 26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV 103 (352)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CC
Confidence 357899999999999999999999999987543321100 000 123222 12444444 49
Q ss_pred cEEEEecCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 89 EATVIYVPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 89 Dlavi~vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|++|-+.... .+..+++.|.+.|++.++.+++
T Consensus 104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 153 (352)
T 1sb8_A 104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAAS 153 (352)
T ss_dssp SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 9999875421 1345677888889988876664
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.22 Score=44.81 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee---------cCeecc--------CCHHhhhhcCCCcEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH---------LDLPVF--------NTVKEARDATGAEAT 91 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i---------~Gip~y--------~sl~el~~~~~iDla 91 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++..........+ .++..+ .++.++.+ ++|++
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGV 87 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc--CCCEE
Confidence 357899999999999999999999999987543321000000 122222 23444443 48999
Q ss_pred EEecCc---------------hhHHHHHHHHHH-cCCCEEEEecC
Q psy8894 92 VIYVPP---------------PGAAKAIHEALD-AEMPLIVCITE 120 (306)
Q Consensus 92 vi~vp~---------------~~~~~~~~e~~~-~Gi~~vvi~t~ 120 (306)
|-+... ..+..+++.|.+ .+++.++.+++
T Consensus 88 ih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS 132 (342)
T 1y1p_A 88 AHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp EECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence 876532 123456666763 67888887776
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.18 Score=46.30 Aligned_cols=88 Identities=17% Similarity=0.118 Sum_probs=56.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCcee---cCeecc--------CCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTH---LDLPVF--------NTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i---~Gip~y--------~sl~el~~~~~iDlavi~vp~ 97 (306)
.++|.|.|++|-.|+.+.+.|++. |+++++.......-... .++.++ .++.++.+. +|++|-+...
T Consensus 24 ~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~--~d~Vih~A~~ 101 (372)
T 3slg_A 24 AKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKK--CDVILPLVAI 101 (372)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHH--CSEEEECBCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhcc--CCEEEEcCcc
Confidence 468999999999999999999988 99987554322111111 233322 124444444 9999865331
Q ss_pred ------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.| +.++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS 141 (372)
T 3slg_A 102 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPST 141 (372)
T ss_dssp CCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECC
T ss_pred ccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCc
Confidence 12245788888889 77776665
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.047 Score=51.18 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccC--------------------CHHhhhhc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFN--------------------TVKEARDA 85 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~--------------------sl~el~~~ 85 (306)
.||+|+|+ |+.|+...+.+.+. ++++++..+...... ...|..+|. +..++..
T Consensus 3 ikVgI~G~-G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~- 80 (343)
T 2yyy_A 3 AKVLINGY-GSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE- 80 (343)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG-
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc-
Confidence 48999999 99999999988776 788886644321000 011222222 2333333
Q ss_pred CCCcEEEEecCchhHHHHHH-HHHHcCCCEEEEecCCC
Q psy8894 86 TGAEATVIYVPPPGAAKAIH-EALDAEMPLIVCITEGI 122 (306)
Q Consensus 86 ~~iDlavi~vp~~~~~~~~~-e~~~~Gi~~vvi~t~Gf 122 (306)
++|+++.|+|.....+..+ .++++|.+ ++ .+.+.
T Consensus 81 -~vDiV~eatg~~~s~~~a~~~~l~aG~~-VI-~sap~ 115 (343)
T 2yyy_A 81 -DADIVVDGAPKKIGKQNLENIYKPHKVK-AI-LQGGE 115 (343)
T ss_dssp -GCSEEEECCCTTHHHHHHHHTTTTTTCE-EE-ECTTS
T ss_pred -CCCEEEECCCccccHHHHHHHHHHCCCE-EE-ECCCc
Confidence 4999999999988888886 88899955 44 45554
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.032 Score=54.64 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=59.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--------------c-------------CeeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--------------L-------------DLPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--------------~-------------Gip~y~sl~el 82 (306)
.++|+|||+ |.||......+.+.|++++ ..|++...-+- . .+....+++++
T Consensus 5 ~~kVgVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 82 (483)
T 3mog_A 5 VQTVAVIGS-GTMGAGIAEVAASHGHQVL-LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHAL 82 (483)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEE-EECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGGG
T ss_pred CCEEEEECc-CHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHHh
Confidence 468999999 9999999999999999965 56655310000 1 23345566654
Q ss_pred hhcCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEE-EecCCCChh
Q psy8894 83 RDATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIV-CITEGIPQL 125 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vv-i~t~Gf~e~ 125 (306)
. . .|++|.++|.... .++++++.+. .-..++ .-|++++.+
T Consensus 83 ~-~--aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~ 126 (483)
T 3mog_A 83 A-A--ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT 126 (483)
T ss_dssp G-G--CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred c-C--CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH
Confidence 3 3 8999999998743 4666666543 334444 246777654
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.27 Score=44.32 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCce----e---cCeecc-------CCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKT----H---LDLPVF-------NTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~----i---~Gip~y-------~sl~el~~~~~iDlavi~v 95 (306)
++|.|.|++|-.|+...+.|.+.|+++++... .+....+ + ..+..+ .++.++.+...+|++|-+.
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence 57999999999999999999999999875432 1110000 0 012211 1233443322389998765
Q ss_pred Cch------------------hHHHHHHHHHHcCCC-EEEEecC
Q psy8894 96 PPP------------------GAAKAIHEALDAEMP-LIVCITE 120 (306)
Q Consensus 96 p~~------------------~~~~~~~e~~~~Gi~-~vvi~t~ 120 (306)
... .+..+++.|.+.+++ .++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS 125 (347)
T 1orr_A 82 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST 125 (347)
T ss_dssp CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred cccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence 431 134577888888886 6665554
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.053 Score=49.81 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc----eecC--eeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK----THLD--LPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~----~i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+.++|+|+|+ |.+|+...+.+.+. |++.+...|+..... +..+ +..+.+++++.+. .|+++.++|.. .
T Consensus 134 ~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~--aDiVi~atp~~--~ 208 (312)
T 2i99_A 134 SSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAG--ADVIITVTLAT--E 208 (312)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTT--CSEEEECCCCS--S
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhc--CCEEEEEeCCC--C
Confidence 4678999999 99999998888775 885555777764111 1124 6678889888765 99999999853 3
Q ss_pred HHHH-HHHHcCC
Q psy8894 102 KAIH-EALDAEM 112 (306)
Q Consensus 102 ~~~~-e~~~~Gi 112 (306)
++++ +.++.|.
T Consensus 209 ~v~~~~~l~~g~ 220 (312)
T 2i99_A 209 PILFGEWVKPGA 220 (312)
T ss_dssp CCBCGGGSCTTC
T ss_pred cccCHHHcCCCc
Confidence 4443 3444554
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.21 Score=44.08 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch-------
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP------- 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~------- 98 (306)
+.++|.|.|++|-.|+...+.|++.|+. ....+.... .++.-..++.++.+..++|++|-+....
T Consensus 5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~~~-----~D~~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~ 79 (319)
T 4b8w_A 5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKD-----ADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNI 79 (319)
T ss_dssp CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCTTT-----CCTTSHHHHHHHHHHSCCSEEEECCCCCCCHHHHT
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCcee-----cccCCHHHHHHHHhhcCCCEEEECceecccccccc
Confidence 4678999999999999999999998761 111111111 1111122355555544599999764321
Q ss_pred ------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 80 ~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS 113 (319)
T 4b8w_A 80 KYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLS 113 (319)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcc
Confidence 1234688888899998876565
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.064 Score=42.91 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeecc-CC------HHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVF-NT------VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y-~s------l~el~~~~~iDlavi~vp~~~~ 100 (306)
.+|+|+|+ |+.|+...+.|.+.|++++ .++.+...- + -.|++++ .+ +.++.- .+.|++|+++|.+..
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~~~~ 84 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLASDIPLV-VIETSRTRVDELRERGVRAVLGNAANEEIMQLAHL-ECAKWLILTIPNGYE 84 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTG-GGCSEEEECCSCHHH
T ss_pred CCEEEECc-CHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCc-ccCCEEEEECCChHH
Confidence 57999999 9999999999999999976 666553100 0 1355533 22 222211 148999999998654
Q ss_pred HH-HHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccC
Q psy8894 101 AK-AIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPN 146 (306)
Q Consensus 101 ~~-~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPN 146 (306)
.. ++..+.+. +...++.-+.. ++. . +..++.|+ .++-|.
T Consensus 85 n~~~~~~a~~~~~~~~iiar~~~--~~~-~----~~l~~~G~d~vi~p~ 126 (140)
T 3fwz_A 85 AGEIVASARAKNPDIEIIARAHY--DDE-V----AYITERGANQVVMGE 126 (140)
T ss_dssp HHHHHHHHHHHCSSSEEEEEESS--HHH-H----HHHHHTTCSEEEEHH
T ss_pred HHHHHHHHHHHCCCCeEEEEECC--HHH-H----HHHHHCCCCEEECch
Confidence 43 44545444 22334433322 221 1 13356776 566554
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.47 E-value=0.29 Score=44.97 Aligned_cols=90 Identities=11% Similarity=0.154 Sum_probs=55.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-----Ccee---------cCeecc-CC------HHhhhhcCCCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-----GKTH---------LDLPVF-NT------VKEARDATGAE 89 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-----g~~i---------~Gip~y-~s------l~el~~~~~iD 89 (306)
++|.|.|++|-.|+...+.|.+.|++++........ -+.+ .++..+ -+ +.++.+...+|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999998754322110 0000 122222 12 33333322479
Q ss_pred EEEEecCch------------------hHHHHHHHHHHcCC---CEEEEecC
Q psy8894 90 ATVIYVPPP------------------GAAKAIHEALDAEM---PLIVCITE 120 (306)
Q Consensus 90 lavi~vp~~------------------~~~~~~~e~~~~Gi---~~vvi~t~ 120 (306)
++|-+.... .+..+++.|.+.++ +.++.+++
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS 156 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST 156 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence 998764321 12456778888888 67776664
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.17 Score=46.53 Aligned_cols=89 Identities=13% Similarity=0.265 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CC-eEEEeeCCCCCCc-----ee--cCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GT-KVVGGVSPGKGGK-----TH--LDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~-~vv~~VnP~~~g~-----~i--~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|.|.|++|..|+...+.|.+. |+ +++ .++.+.... ++ .++..+ .++.++.+ ++|++|-
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vih 97 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKII-VYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE--GVDICIH 97 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEE-EEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT--TCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEE-EEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh--cCCEEEE
Confidence 478999999999999999999888 97 766 443321000 00 122222 23444444 4999997
Q ss_pred ecCchh------------------HHHHHHHHHHcCCCEEEEecCC
Q psy8894 94 YVPPPG------------------AAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 94 ~vp~~~------------------~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+..... +..+++.|.+.|++.++.+++.
T Consensus 98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~ 143 (344)
T 2gn4_A 98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD 143 (344)
T ss_dssp CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG
T ss_pred CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC
Confidence 754221 2467788888999998887763
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.2 Score=45.45 Aligned_cols=91 Identities=21% Similarity=0.276 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee---cCeecc-CC------HHhhhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH---LDLPVF-NT------VKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i---~Gip~y-~s------l~el~~~~~iDlavi~vp~- 97 (306)
.++|.|.|++|..|+...+.|.+.|+++++......... .+ .++.++ -+ +.++.+...+|++|-+...
T Consensus 21 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~~ 100 (333)
T 2q1w_A 21 MKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASY 100 (333)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECceec
Confidence 468999999999999999999999999875533211001 11 233222 12 3333332238999876432
Q ss_pred --------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 101 ~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS 137 (333)
T 2q1w_A 101 KDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQT 137 (333)
T ss_dssp SCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 12456778888889988876664
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.1 Score=46.25 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=56.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeec-------cCCHHhhhhcCCCcEEEEecCc-----
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPV-------FNTVKEARDATGAEATVIYVPP----- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~-------y~sl~el~~~~~iDlavi~vp~----- 97 (306)
.++|.|.|+ |-.|+...+.|.+.|+++++...... ..-.++.. ..++.++.+. .+|++|-+...
T Consensus 3 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~~~~~ 78 (286)
T 3gpi_A 3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQ--PMPAGVQTLIADVTRPDTLASIVHL-RPEILVYCVAASEYSD 78 (286)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTS--CCCTTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHHHHC-
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcc--ccccCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCCCCCH
Confidence 368999995 99999999999999999875432211 11112222 1223344332 39999877532
Q ss_pred --------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++.++.+++
T Consensus 79 ~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS 109 (286)
T 3gpi_A 79 EHYRLSYVEGLRNTLSALEGAPLQHVFFVSS 109 (286)
T ss_dssp ----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence 23667788888889988876664
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.34 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.++|+|+|+ |..|....++|...|..-+..||+..
T Consensus 31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 578999999 88999999999999986455888875
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.21 Score=45.23 Aligned_cols=90 Identities=12% Similarity=0.029 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC------Cce----e-----cCeecc-------CCHHhhhhcCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG------GKT----H-----LDLPVF-------NTVKEARDATGA 88 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~------g~~----i-----~Gip~y-------~sl~el~~~~~i 88 (306)
++|.|.|++|-.|+...+.|.+.|+++++....... ..+ + .++..+ .++.++.+..++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (348)
T 1ek6_A 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcCC
Confidence 689999999999999999999999998754321110 000 0 011111 124444442248
Q ss_pred cEEEEecCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 89 EATVIYVPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 89 Dlavi~vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
|++|-+.... .+..+++.|.+.|++.++.+++
T Consensus 83 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 132 (348)
T 1ek6_A 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSS 132 (348)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 9988765421 2345677777889988877664
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.42 Score=43.61 Aligned_cols=90 Identities=10% Similarity=0.082 Sum_probs=54.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-----cee--------cCeeccC-C------HHhhhhcCCCcE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-----KTH--------LDLPVFN-T------VKEARDATGAEA 90 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-----~~i--------~Gip~y~-s------l~el~~~~~iDl 90 (306)
++|.|.|++|-.|+...+.|.+.|++++......... .++ .++..+. + +.++.+...+|+
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (372)
T 1db3_A 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (372)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCCE
Confidence 5799999999999999999999999977443211100 000 1222221 2 333333224799
Q ss_pred EEEecCc------------------hhHHHHHHHHHHcCC---CEEEEecC
Q psy8894 91 TVIYVPP------------------PGAAKAIHEALDAEM---PLIVCITE 120 (306)
Q Consensus 91 avi~vp~------------------~~~~~~~~e~~~~Gi---~~vvi~t~ 120 (306)
+|-+... ..+..+++.|.+.++ +.++.+++
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS 132 (372)
T 1db3_A 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST 132 (372)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred EEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence 8876431 123456788888888 67776664
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.096 Score=46.45 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-cCeeccCCHHhhhhcCCCcEEEEecCch-----------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-LDLPVFNTVKEARDATGAEATVIYVPPP----------- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-~Gip~y~sl~el~~~~~iDlavi~vp~~----------- 98 (306)
++|.|.|++|-.|+...+.|. .|+++++ ++.+. ..+ .++.-..++.++.+..++|+++-+....
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~-~~r~~--~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~ 76 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIA-LDVHS--KEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPEL 76 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEE-ECTTC--SSSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEE-ecccc--ccccccCCCHHHHHHHHHhcCCCEEEECcccCCHhhhhcCHHH
Confidence 379999999999999999888 7999874 44332 111 1121122344444322489998765321
Q ss_pred -------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 -------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 -------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++ ++.+++
T Consensus 77 ~~~~n~~~~~~l~~a~~~~~~~-~v~~SS 104 (299)
T 1n2s_A 77 AQLLNATSVEAIAKAANETGAW-VVHYST 104 (299)
T ss_dssp HHHHHTHHHHHHHHHHTTTTCE-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCc-EEEEec
Confidence 145677777778885 554554
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.17 Score=45.26 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc------------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP------------ 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~------------ 97 (306)
++|.|.|++|-.|+...+.|.+.|+++++... +...+--..++.-..++.++.+..++|++|-+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~ 82 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDA 82 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--------------
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcccChhhhhcCHHH
Confidence 68999999999999999999999999874431 21100000111112334444432248998876432
Q ss_pred ------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 ------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.|.+.|++ ++.+++
T Consensus 83 ~~~~n~~~~~~l~~a~~~~~~~-~v~~SS 110 (315)
T 2ydy_A 83 ASQLNVDASGNLAKEAAAVGAF-LIYISS 110 (315)
T ss_dssp -----CHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCe-EEEEch
Confidence 1245677888888885 554554
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.23 Score=44.72 Aligned_cols=91 Identities=11% Similarity=0.182 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--ee------cCeeccC-C------HHhhhhcCCCcEEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--TH------LDLPVFN-T------VKEARDATGAEATVIY 94 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i------~Gip~y~-s------l~el~~~~~iDlavi~ 94 (306)
.++|.|.|++|-.|+...+.|.+.|++++.......... .+ .++..+. + +.++.+..++|++|-+
T Consensus 3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 82 (345)
T 2z1m_A 3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNL 82 (345)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEEC
Confidence 368999999999999999999999999874432211000 00 1232221 2 3333332247999876
Q ss_pred cCch------------------hHHHHHHHHHHcCC-CEEEEecC
Q psy8894 95 VPPP------------------GAAKAIHEALDAEM-PLIVCITE 120 (306)
Q Consensus 95 vp~~------------------~~~~~~~e~~~~Gi-~~vvi~t~ 120 (306)
.... .+..+++.|.+.|+ +.++.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (345)
T 2z1m_A 83 AAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAST 127 (345)
T ss_dssp CCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred CCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEec
Confidence 5421 14456778888887 67776655
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.13 Score=45.74 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=55.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCce-ecCeec-------cCCHHhhhhcCCCcEEEEecCch--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGKT-HLDLPV-------FNTVKEARDATGAEATVIYVPPP-- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~~-i~Gip~-------y~sl~el~~~~~iDlavi~vp~~-- 98 (306)
++|.|.|++|-.|+...+.|.+. |++++... .+....+ ..++.. ..++.++.++.++|++|-+....
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~-r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~ 81 (312)
T 2yy7_A 3 PKILIIGACGQIGTELTQKLRKLYGTENVIASD-IRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSA 81 (312)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEE-SCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHH
T ss_pred ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEc-CCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCccCCC
Confidence 57999999999999999998887 88877443 2211111 112211 12344554422599999775321
Q ss_pred ---------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ---------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ---------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 82 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS 118 (312)
T 2yy7_A 82 TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSS 118 (312)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEE
T ss_pred chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2335677787889988775553
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.41 Score=43.51 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=54.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCC-CCC-cee------cCeecc-------CCHHhhhhcCCCcEEEEec
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPG-KGG-KTH------LDLPVF-------NTVKEARDATGAEATVIYV 95 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~-~~g-~~i------~Gip~y-------~sl~el~~~~~iDlavi~v 95 (306)
+|.|.|++|-.|+...+.|.+. |++++...... ... +.+ .++..+ .++.++.++.++|++|-+.
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A 81 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLA 81 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 6999999999999999988887 78877543211 000 111 122221 1244444312499998765
Q ss_pred Cch------------------hHHHHHHHHHHc--CCC-------EEEEecC
Q psy8894 96 PPP------------------GAAKAIHEALDA--EMP-------LIVCITE 120 (306)
Q Consensus 96 p~~------------------~~~~~~~e~~~~--Gi~-------~vvi~t~ 120 (306)
... .+..+++.|.+. +++ .++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS 133 (361)
T 1kew_A 82 AESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHIST 133 (361)
T ss_dssp SCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEE
T ss_pred CCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCC
Confidence 321 234567778777 887 7776665
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.21 Score=45.84 Aligned_cols=90 Identities=11% Similarity=-0.017 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH--cCCeEEEeeC-CC------------CCCceec--Ceec-------cCCHHhhhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE--YGTKVVGGVS-PG------------KGGKTHL--DLPV-------FNTVKEARD 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~--~g~~vv~~Vn-P~------------~~g~~i~--Gip~-------y~sl~el~~ 84 (306)
+.++|.|.|++|-.|+...+.|.+ .|+++++... +. ..-.... ++.. ..+++++ .
T Consensus 9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~ 87 (362)
T 3sxp_A 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL-E 87 (362)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-h
Confidence 357899999999999999999999 8999875432 21 0000111 1111 1224444 1
Q ss_pred cCCCcEEEEecCc----------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 85 ATGAEATVIYVPP----------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 85 ~~~iDlavi~vp~----------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..++|++|-+... ..+..+++.|.+.|++ ++.+++
T Consensus 88 ~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS 138 (362)
T 3sxp_A 88 KLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASS 138 (362)
T ss_dssp TSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred ccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCc
Confidence 1359999865431 2345677888888998 665565
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.31 Score=45.48 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCC-------------CCCC----------c--eecC--eeccC--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSP-------------GKGG----------K--THLD--LPVFN-- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP-------------~~~g----------~--~i~G--ip~y~-- 77 (306)
.+|+|.|+ |+.|+...+.+.+. ++++++.-++ +..| + .+.| ++++.
T Consensus 2 ikVaInGf-GrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence 48999999 99999999987765 6788866553 1111 1 1223 34553
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+.++++- +.++|+++.+++.....+.+...++.|.|.+++
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVvi 121 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEE
Confidence 4556652 136999999999988899999999999998775
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.62 Score=42.89 Aligned_cols=90 Identities=12% Similarity=-0.017 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCC-Cc--eec------Ceecc---CCHHhhhhcCCCcEEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKG-GK--THL------DLPVF---NTVKEARDATGAEATVIY 94 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~-g~--~i~------Gip~y---~sl~el~~~~~iDlavi~ 94 (306)
++++|+|+|++|..|......|.+.| .+++ .+|.... +. ++. .+..+ .++++... +.|+++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~-l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~--gaDvVi~~ 83 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLH-LYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALT--GMDLIIVP 83 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE-EEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHT--TCSEEEEC
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcC--CCCEEEEc
Confidence 35789999988999998877777777 4554 4553321 10 011 01111 13444444 49999998
Q ss_pred cC--c--------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 95 VP--P--------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 95 vp--~--------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
.+ . ..+.++++.+.+.+.+.++++.+.
T Consensus 84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SN 126 (326)
T 1smk_A 84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126 (326)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 64 2 335667788888888877766654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.25 Score=48.10 Aligned_cols=93 Identities=13% Similarity=0.014 Sum_probs=58.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-Cc-----------------------eecCeeccCCHHhhhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-GK-----------------------THLDLPVFNTVKEARD 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-g~-----------------------~i~Gip~y~sl~el~~ 84 (306)
+.++|+|||+ |.||......+.+.|++++ .+|++.. +. ....+....+++++.
T Consensus 53 ~i~kVaVIGa-G~MG~~IA~~la~aG~~V~-l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~al~- 129 (460)
T 3k6j_A 53 DVNSVAIIGG-GTMGKAMAICFGLAGIETF-LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFHKLS- 129 (460)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGGGCT-
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHHHHc-
Confidence 3478999999 9999998899999999975 5665431 00 001223455665443
Q ss_pred cCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChhH
Q psy8894 85 ATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQLD 126 (306)
Q Consensus 85 ~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~~ 126 (306)
+.|++|.++|... -.++++++.+. .-..+++ -|++.+-.+
T Consensus 130 --~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ 173 (460)
T 3k6j_A 130 --NCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNE 173 (460)
T ss_dssp --TCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHH
T ss_pred --cCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHH
Confidence 3899999999653 34566665542 3344442 456666443
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.24 Score=44.20 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=55.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee-cCeecc-------CCHHhhhhcCCCcEEEEecCch----
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH-LDLPVF-------NTVKEARDATGAEATVIYVPPP---- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i-~Gip~y-------~sl~el~~~~~iDlavi~vp~~---- 98 (306)
+|.|.|++|-.|+...+.|.+.|++++.......... .. .++..+ .++.++.+..++|.++-+....
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~ 81 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKV 81 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCchh
Confidence 6999999999999999999999999874432111001 11 122222 1233444322489988764321
Q ss_pred --------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 82 ~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS 117 (311)
T 2p5y_A 82 SVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFAST 117 (311)
T ss_dssp HHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 1345677788889988887665
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.47 Score=44.42 Aligned_cols=91 Identities=22% Similarity=0.234 Sum_probs=67.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--------------Cc------------eecC--eeccC--
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--------------GK------------THLD--LPVFN-- 77 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--------------g~------------~i~G--ip~y~-- 77 (306)
.++.+|+|.|. |+.|+.+.+.+.+.++++++.-||... |. .+.| ++++.
T Consensus 5 ~~~~kvgInGF-GRIGrlv~R~~~~~~veivainDp~~d~~~~a~l~~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 83 (346)
T 3h9e_O 5 ARELTVGINGF-GRIGRLVLRACMEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK 83 (346)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CCeeEEEEECC-ChHHHHHHHHHHhCCCEEEEEeCCCCChhHhcccccccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence 34678999999 999999999888888998876666310 11 1234 34552
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEec
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
+.++++= +.++|+++.++......+-+...++.|.|.++|=.
T Consensus 84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsa 126 (346)
T 3h9e_O 84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISA 126 (346)
T ss_dssp SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESS
T ss_pred ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECC
Confidence 4666662 22599999999999999999999999999988633
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.44 Score=42.24 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..+|+|+|+ |..|+.+.++|...|..-+..+|+..
T Consensus 28 ~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~ 62 (251)
T 1zud_1 28 DSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDD 62 (251)
T ss_dssp TCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred cCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999 88999999999999997666888764
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.37 Score=42.98 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=54.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHc--CCeEEEee-CCCCC-Cce-e-cCeeccCCHHhhhhcCCCcEEEEecCch-------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY--GTKVVGGV-SPGKG-GKT-H-LDLPVFNTVKEARDATGAEATVIYVPPP------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V-nP~~~-g~~-i-~Gip~y~sl~el~~~~~iDlavi~vp~~------- 98 (306)
+|.|.|++|-.|+...+.|.+. |+++++.. ++... +.+ + .++.-..++.++.+..++|++|-+....
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~~~~~~ 80 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKD 80 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCTTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCHHHHHHC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccCCccccC
Confidence 4899999999999999988887 78876442 22210 000 0 1111112344554423599999775421
Q ss_pred ----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.|++.++.+++
T Consensus 81 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS 112 (317)
T 3ajr_A 81 PALAYKVNMNGTYNILEAAKQHRVEKVVIPST 112 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHHHhhhhhHHHHHHHHHHHHcCCCEEEEecC
Confidence 1345677788889988876654
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.21 Score=48.25 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCce------------------------ecCeecc----
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKT------------------------HLDLPVF---- 76 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~------------------------i~Gip~y---- 76 (306)
.+.++|.|.|++|-.|+...+.|.+. |+++++.+-... ..+ ..++.++
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAES-DEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSS-HHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCC-cHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 45689999999999999999999888 899875543211 000 0122211
Q ss_pred ---------CCHHhhhhcCCCcEEEEecCc--------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 77 ---------NTVKEARDATGAEATVIYVPP--------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 77 ---------~sl~el~~~~~iDlavi~vp~--------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.++.++.+. +|++|-+... ..+..+++.|.+.+++.++.+++
T Consensus 150 ~~~~~gld~~~~~~~~~~--~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS 214 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAET--VDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST 214 (478)
T ss_dssp TSGGGGCCHHHHHHHHHH--CCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred CCcccCCCHHHHHHHHcC--CCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence 123444444 8999866422 24566788888889877776665
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.88 E-value=0.29 Score=44.51 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=52.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCC-c----eec--------Ceec-cCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGG-K----THL--------DLPV-FNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g-~----~i~--------Gip~-y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......|.+.| .+++ .+|.+... + ++. .+.+ ..+++++ . +.|+++++
T Consensus 2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~-l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~-~--~aDvViia 76 (309)
T 1hyh_A 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL-A--DADVVIST 76 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG-T--TCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHh-C--CCCEEEEe
Confidence 48999997 999999888888878 4554 66654310 0 111 1233 2445333 3 38999999
Q ss_pred cCchh--------------------HHHHHHHHHHcCCCEEEE
Q psy8894 95 VPPPG--------------------AAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 95 vp~~~--------------------~~~~~~e~~~~Gi~~vvi 117 (306)
+++.. ..++++++.+...+.+++
T Consensus 77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii 119 (309)
T 1hyh_A 77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV 119 (309)
T ss_dssp CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 99765 357777776655554443
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.4 Score=44.02 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCCc-----eecCeeccC--CHHhhh-hcCCCcEEEEe--cC
Q psy8894 28 TSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGGK-----THLDLPVFN--TVKEAR-DATGAEATVIY--VP 96 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g~-----~i~Gip~y~--sl~el~-~~~~iDlavi~--vp 96 (306)
|.+++|.|+|. |..|-. ..+.|.+.|+++. +.|.+.... +..|++++. +-+++. .. +|++|+. +|
T Consensus 2 ~~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~-~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~--~d~vV~Spgi~ 77 (326)
T 3eag_A 2 NAMKHIHIIGI-GGTFMGGLAAIAKEAGFEVS-GCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFK--ADVYVIGNVAK 77 (326)
T ss_dssp -CCCEEEEESC-CSHHHHHHHHHHHHTTCEEE-EEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCC--CSEEEECTTCC
T ss_pred CCCcEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCC--CCEEEECCCcC
Confidence 45789999999 888875 5678888999976 555442111 124777763 345554 33 8988875 44
Q ss_pred chhHHHHHHHHHHcCCC
Q psy8894 97 PPGAAKAIHEALDAEMP 113 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~ 113 (306)
++ .+.++++.++|++
T Consensus 78 ~~--~p~~~~a~~~gi~ 92 (326)
T 3eag_A 78 RG--MDVVEAILNLGLP 92 (326)
T ss_dssp TT--CHHHHHHHHTTCC
T ss_pred CC--CHHHHHHHHcCCc
Confidence 33 3345666666665
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.37 Score=44.52 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=53.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCce-----e----------cCeeccCCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGKT-----H----------LDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~~-----i----------~Gip~y~sl~el~~~~~iDlavi 93 (306)
+++|+|+|+ |.+|......+...|+ + +..+|.+...-+ + ..+....+++++. +.|++|+
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~---~aD~VI~ 88 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQ---NSDVVII 88 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGT---TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHC---CCCEEEE
Confidence 368999999 9999988777877788 7 446665531000 0 0122234564443 3899999
Q ss_pred ec--Cc--------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 94 YV--PP--------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 94 ~v--p~--------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++ |. +...++++++.+..-+.++++.+.
T Consensus 89 avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 89 TAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp CCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 98 43 225666777777666665544443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.35 Score=45.50 Aligned_cols=75 Identities=17% Similarity=0.103 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeC---CCC---------CCceec-----C--e------e-ccCCHHhhh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVS---PGK---------GGKTHL-----D--L------P-VFNTVKEAR 83 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~Vn---P~~---------~g~~i~-----G--i------p-~y~sl~el~ 83 (306)
++|+|+|+ |.+|......|.+ .|+++. .++ ++. .+-.+. | . . +..+++++.
T Consensus 3 mkI~ViGa-G~~G~~~a~~La~~~G~~V~-~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (404)
T 3c7a_A 3 VKVCVCGG-GNGAHTLSGLAASRDGVEVR-VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI 80 (404)
T ss_dssp EEEEEECC-SHHHHHHHHHHTTSTTEEEE-EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHhCCCCEEE-EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence 58999999 9999988888877 488865 555 311 000000 2 1 1 344676665
Q ss_pred hcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 84 DATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.. .|++++++|+....++++++..
T Consensus 81 ~~--aD~Vilav~~~~~~~v~~~l~~ 104 (404)
T 3c7a_A 81 SG--ADVVILTVPAFAHEGYFQAMAP 104 (404)
T ss_dssp TT--CSEEEECSCGGGHHHHHHHHTT
T ss_pred CC--CCEEEEeCchHHHHHHHHHHHh
Confidence 54 8999999999999998888765
|
| >1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=91.54 E-value=1.3 Score=41.71 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=49.7
Q ss_pred HHhhhhcCCCcEEEEecCchhHHH---HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCcc
Q psy8894 79 VKEARDATGAEATVIYVPPPGAAK---AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQ 155 (306)
Q Consensus 79 l~el~~~~~iDlavi~vp~~~~~~---~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~ 155 (306)
+.+..+++++|++|...|...... .+..|++.|+.. +++++-+.-..- ++ .++++++|+.+.|-+
T Consensus 130 i~~~~~~~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~f-vN~~P~~~~~~P-~~-~el~~~~g~pi~GdD--------- 197 (367)
T 1gr0_A 130 VVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAF-VNALPVFIASDP-VW-AKKFTDARVPIVGDD--------- 197 (367)
T ss_dssp HHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEE-EECSSCCSTTSH-HH-HHHHHHHTCEEEESS---------
T ss_pred HHHHHHHhCCcEEEEeeeCCCcCHHHHHHHHHHHcCCce-EecCCccccCCH-HH-HHHHHHcCCCEeccc---------
Confidence 333334455666655555432221 334555566663 456654433211 11 135566666666654
Q ss_pred ccccCCCCCCCCCCCEEEEecChhhH--HHHHHHHHhCCCceEEEEec
Q psy8894 156 CKIGIMPGHIHQRGCVGVVSRSGTLT--YEAVHQTTQVGLGQTLCVGI 201 (306)
Q Consensus 156 ~~~~~~~~~~~~~G~va~vSqSG~~~--~~~~~~~~~~g~g~s~~vs~ 201 (306)
+=||+|+-- ..+...+..||+.+..+.|+
T Consensus 198 -----------------~Ksq~G~T~~k~~La~~l~~rg~kv~~~~q~ 228 (367)
T 1gr0_A 198 -----------------IKSQVGATITHRVLAKLFEDRGVQLDRTMQL 228 (367)
T ss_dssp -----------------BCCSSCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----------------cccccCCChHHHHHHHHHHHcCCceeEEEEE
Confidence 125677433 22456778899988888875
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.65 Score=42.82 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCChHHHHHHH-HcCCeEEEee
Q psy8894 31 SKVICQGFTGKQGTFHSKQAI-EYGTKVVGGV 61 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~-~~g~~vv~~V 61 (306)
++|.|.|++|-.|+...+.|. +.|++++...
T Consensus 3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~ 34 (397)
T 1gy8_A 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD 34 (397)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEe
Confidence 479999999999999999999 8999987543
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.18 Score=48.92 Aligned_cols=90 Identities=20% Similarity=0.114 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----e---------cC-----------eeccCCHHhhhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----H---------LD-----------LPVFNTVKEARD 84 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----i---------~G-----------ip~y~sl~el~~ 84 (306)
.++|+|+|+ |.||......+.+.|++++ .+|++...-+ + .| ..+..+++++ .
T Consensus 37 ~~kV~VIGa-G~MG~~iA~~la~~G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 113 (463)
T 1zcj_A 37 VSSVGVLGL-GTMGRGIAISFARVGISVV-AVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL-S 113 (463)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGGGG-T
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHHHH-C
Confidence 468999999 9999988889998999875 5665431000 0 01 1234556443 3
Q ss_pred cCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEEE-ecCCCCh
Q psy8894 85 ATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIVC-ITEGIPQ 124 (306)
Q Consensus 85 ~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vvi-~t~Gf~e 124 (306)
+.|++|.++|.... .++++++... .-..+++ -|++.+.
T Consensus 114 --~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~ 155 (463)
T 1zcj_A 114 --TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNV 155 (463)
T ss_dssp --TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH
T ss_pred --CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCH
Confidence 38999999997542 4455554442 2233443 2445543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=0.53 Score=43.51 Aligned_cols=90 Identities=12% Similarity=-0.009 Sum_probs=56.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCC--c---ee------cC----eeccCCHHhhhhcCCCcEE
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGG--K---TH------LD----LPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g--~---~i------~G----ip~y~sl~el~~~~~iDla 91 (306)
.++++|+|+|+ |.+|......+...|+ + +..+|.+..- . ++ .+ +....++++.... .|++
T Consensus 7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~--aDiV 82 (331)
T 1pzg_A 7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG--ADCV 82 (331)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT--CSEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC--CCEE
Confidence 34579999999 9999988888877787 7 4466554310 0 00 01 2223567644443 8999
Q ss_pred EEec--Cch-------------------hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 92 VIYV--PPP-------------------GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 92 vi~v--p~~-------------------~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
|+++ |.. ...++++++.+..-+++++..+.
T Consensus 83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 133 (331)
T 1pzg_A 83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 133 (331)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 9997 532 15667777777766666555543
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=91.07 E-value=1.4 Score=39.53 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=55.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCCc-----ee---cCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGGK-----TH---LDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g~-----~i---~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|.|.|++|-.|+...+.|++.|+++++.+ ++..... .+ .++..+ .++.++.+. +|+++-
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~D~Vih 86 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAG--CDFVFH 86 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTT--CSEEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcC--CCEEEE
Confidence 36899999999999999999999999987544 3321000 00 122222 234445443 898886
Q ss_pred ecCc---------h--------hHHHHHHHHHHcC-CCEEEEecC
Q psy8894 94 YVPP---------P--------GAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 94 ~vp~---------~--------~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
+..+ + .+..+++.|.+.+ ++.++..++
T Consensus 87 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS 131 (338)
T 2rh8_A 87 VATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS 131 (338)
T ss_dssp ESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred eCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence 4311 0 1334667777775 888887665
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.76 Score=41.32 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---C---CeEEEeeCCCCCC--cee------cCeecc-CC------HHhhhhcCCCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---G---TKVVGGVSPGKGG--KTH------LDLPVF-NT------VKEARDATGAE 89 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g---~~vv~~VnP~~~g--~~i------~Gip~y-~s------l~el~~~~~iD 89 (306)
++|.|.|++|-.|+...+.|.+. | ++++........+ ..+ .++..+ -+ +.++.. ++|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d 78 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR--GVD 78 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT--TCC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhc--CCC
Confidence 36999999999999999999886 7 8877543221100 111 122222 12 334443 499
Q ss_pred EEEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 90 ATVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 90 lavi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++|-+... ..+..+++.|.+.+++.++.+++
T Consensus 79 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS 127 (337)
T 1r6d_A 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (337)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 99876542 12456778888889988876664
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=90.72 E-value=0.26 Score=46.86 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e---ecCeec--cCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T---HLDLPV--FNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~---i~Gip~--y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.++|+|+|+ |.+|+...+.+...|++-|..+|+..... + ..|..+ |.++.++... .|+++.++|.
T Consensus 166 ~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~--aDvVi~at~~ 237 (404)
T 1gpj_A 166 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLAR--SDVVVSATAA 237 (404)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHT--CSEEEECCSS
T ss_pred cCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcC--CCEEEEccCC
Confidence 4689999999 99999999999999994334788763110 1 113322 2344444433 6777777654
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.23 Score=46.47 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-----ee---cC--eeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-----TH---LD--LPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-----~i---~G--ip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
+.++++|+|+ |.+|+...+.+.. .+.+.+...|+..... +. .| +..+.+++++... .|+++.+||.
T Consensus 128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~--aDiVi~aTps 204 (350)
T 1x7d_A 128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG--VDIITTVTAD 204 (350)
T ss_dssp TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT--CSEEEECCCC
T ss_pred cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc--CCEEEEeccC
Confidence 4679999999 9999998887654 4666566778763111 11 15 4567889888765 9999999997
Q ss_pred hhHHHHH-HHHHHcCCCE
Q psy8894 98 PGAAKAI-HEALDAEMPL 114 (306)
Q Consensus 98 ~~~~~~~-~e~~~~Gi~~ 114 (306)
....+++ .+.++.|...
T Consensus 205 ~~~~pvl~~~~l~~G~~V 222 (350)
T 1x7d_A 205 KAYATIITPDMLEPGMHL 222 (350)
T ss_dssp SSEEEEECGGGCCTTCEE
T ss_pred CCCCceecHHHcCCCCEE
Confidence 6322222 3455666653
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=90.49 E-value=0.32 Score=45.80 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee------cCeeccCCHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH------LDLPVFNTVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i------~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+-++|+|+|+ |++|+...+.+.+.|.+++ ..|+.. +.+ .|.... +.+++... +.|+++.|........
T Consensus 172 ~GktV~V~G~-G~VG~~~A~~L~~~GakVv-v~D~~~--~~l~~~a~~~ga~~v-~~~~ll~~-~~DIvip~a~~~~I~~ 245 (364)
T 1leh_A 172 EGLAVSVQGL-GNVAKALCKKLNTEGAKLV-VTDVNK--AAVSAAVAEEGADAV-APNAIYGV-TCDIFAPCALGAVLND 245 (364)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHHHHCCEEC-CGGGTTTC-CCSEEEECSCSCCBST
T ss_pred CcCEEEEECc-hHHHHHHHHHHHHCCCEEE-EEcCCH--HHHHHHHHHcCCEEE-ChHHHhcc-CCcEeeccchHHHhCH
Confidence 4588999999 9999999999999999987 777754 211 133222 44555442 4899988754432211
Q ss_pred HHHHHHHcCCCEEEEecCCCCh-hHHHHHHHHHHHhcCCeEEccC
Q psy8894 103 AIHEALDAEMPLIVCITEGIPQ-LDMVKVKHRLIRQSKSRLIGPN 146 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf~e-~~~~~~~~~~ar~~gi~iiGPN 146 (306)
+.+...|.+.|+..+.+... ++.. ++.++.|+ ++.|.
T Consensus 246 --~~~~~lg~~iV~e~An~p~t~~ea~----~~L~~~Gi-~~~Pd 283 (364)
T 1leh_A 246 --FTIPQLKAKVIAGSADNQLKDPRHG----KYLHELGI-VYAPD 283 (364)
T ss_dssp --THHHHCCCSEECCSCSCCBSSHHHH----HHHHHHTC-EECCH
T ss_pred --HHHHhCCCcEEEeCCCCCcccHHHH----HHHHhCCC-EEecc
Confidence 12334477765543333321 1222 24567776 44563
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.26 Score=46.17 Aligned_cols=86 Identities=14% Similarity=0.111 Sum_probs=61.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCC-------------CCCC----------ce--ecC--eeccC--CHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSP-------------GKGG----------KT--HLD--LPVFN--TVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP-------------~~~g----------~~--i~G--ip~y~--sl~ 80 (306)
.+|+|.|+ |+.|+...+.+.+. ++++++.-+. +..| +. +.| ++++. +.+
T Consensus 3 ikV~InGf-GrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~ 81 (342)
T 2ep7_A 3 IKVGINGF-GRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPS 81 (342)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChh
Confidence 58999999 99999999988776 8898866443 1111 11 223 34553 455
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++- +.++|+++.+++.....+.....++.|.+.+++
T Consensus 82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvi 119 (342)
T 2ep7_A 82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVII 119 (342)
T ss_dssp GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEE
T ss_pred hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEe
Confidence 5542 125999999999999999999999999998775
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.48 Score=42.82 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=53.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCC--c---ee--cCeecc-C------CHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGG--K---TH--LDLPVF-N------TVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g--~---~i--~Gip~y-~------sl~el~~~~~iDlavi~ 94 (306)
++|.|.|++|-.|+...+.|.+. |+++++.......+ . ++ .++..+ . ++.++.+. +|++|-+
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~vih~ 82 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAK--ADAIVHY 82 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTT--CSEEEEC
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhc--CCEEEEC
Confidence 68999999999999999998887 88877543321100 0 11 122222 1 24444444 8999876
Q ss_pred cCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.... .+..+++.|.+.|+ .++.+++
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS 125 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVST 125 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEE
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecc
Confidence 5422 14556778888888 4555554
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=90.24 E-value=0.8 Score=41.24 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=54.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcC-------CeEEEeeC-CCCC----Cceec----CeeccCCHHhhhhcCCCcEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYG-------TKVVGGVS-PGKG----GKTHL----DLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g-------~~vv~~Vn-P~~~----g~~i~----Gip~y~sl~el~~~~~iDlav 92 (306)
+.++|.|.|++|-.|+...+.|.+.| ++++.... +... +..+. ++.-..++.++.+ .++|++|
T Consensus 13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vi 91 (342)
T 2hrz_A 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVE-ARPDVIF 91 (342)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHH-TCCSEEE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHh-cCCCEEE
Confidence 45789999999999999999999989 67664322 2110 01111 1111223444443 2499999
Q ss_pred EecCch-----------------hHHHHHHHHHHcC-----CCEEEEecC
Q psy8894 93 IYVPPP-----------------GAAKAIHEALDAE-----MPLIVCITE 120 (306)
Q Consensus 93 i~vp~~-----------------~~~~~~~e~~~~G-----i~~vvi~t~ 120 (306)
-+.... .+..+++.|.+.+ ++.++.+++
T Consensus 92 h~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS 141 (342)
T 2hrz_A 92 HLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSS 141 (342)
T ss_dssp ECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred ECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCc
Confidence 765421 1234566676666 787776654
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.2 Score=51.41 Aligned_cols=92 Identities=14% Similarity=0.048 Sum_probs=56.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee--------------cC-------------eeccCCHHh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH--------------LD-------------LPVFNTVKE 81 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i--------------~G-------------ip~y~sl~e 81 (306)
+.++|+|||+ |.||......+.+.|++++ .+|++...-+- .| +....+++.
T Consensus 313 ~i~kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~ 390 (715)
T 1wdk_A 313 DVKQAAVLGA-GIMGGGIAYQSASKGTPIL-MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD 390 (715)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT
T ss_pred cCCEEEEECC-ChhhHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCHHH
Confidence 3567999999 9999998889999999975 66654310000 12 233345533
Q ss_pred hhhcCCCcEEEEecCchh--HHHHHHHHHHc-CCCEEEE-ecCCCChh
Q psy8894 82 ARDATGAEATVIYVPPPG--AAKAIHEALDA-EMPLIVC-ITEGIPQL 125 (306)
Q Consensus 82 l~~~~~iDlavi~vp~~~--~~~~~~e~~~~-Gi~~vvi-~t~Gf~e~ 125 (306)
+ .. .|++|.++|... -.++++++.+. .-..+++ .|++++.+
T Consensus 391 ~-~~--aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~ 435 (715)
T 1wdk_A 391 F-GN--VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS 435 (715)
T ss_dssp G-GG--CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred H-CC--CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH
Confidence 3 33 899999999665 34555655432 2233443 46677654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.83 E-value=0.25 Score=48.54 Aligned_cols=69 Identities=20% Similarity=0.151 Sum_probs=50.6
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
....++|+|+|+ |.+|+...+.++.+|++++ .+++..... .-.|.. +.+++++... .|+++++++....
T Consensus 271 ~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Vi-v~d~~~~~~~~A~~~Ga~-~~~l~e~l~~--aDvVi~atgt~~~ 342 (494)
T 3ce6_A 271 LIGGKKVLICGY-GDVGKGCAEAMKGQGARVS-VTEIDPINALQAMMEGFD-VVTVEEAIGD--ADIVVTATGNKDI 342 (494)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCE-ECCHHHHGGG--CSEEEECSSSSCS
T ss_pred CCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCCHHHHHHHHHcCCE-EecHHHHHhC--CCEEEECCCCHHH
Confidence 345689999999 9999999999999999865 667653111 124655 3467777655 9999999887654
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=89.78 E-value=0.72 Score=46.49 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=57.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----ee-----cCeecc-------CCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----TH-----LDLPVF-------NTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i-----~Gip~y-------~sl~el~~~~~iDlavi 93 (306)
.++|.|.|++|-.|+...+.|.+.|+++++......... .+ .++..+ .++.++.+..++|++|-
T Consensus 11 ~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vih 90 (699)
T 1z45_A 11 SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH 90 (699)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEEE
Confidence 478999999999999999999999999875432211000 00 122211 23444444224999987
Q ss_pred ecCch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 94 YVPPP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 94 ~vp~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+.... .+..+++.|.+.+++.++.+++
T Consensus 91 ~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS 135 (699)
T 1z45_A 91 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 135 (699)
T ss_dssp CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 64321 2344667777789988887665
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.95 Score=40.69 Aligned_cols=89 Identities=12% Similarity=0.142 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-e------cC--eecc-C------CHHhhhhcCCCcEEEEec
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-H------LD--LPVF-N------TVKEARDATGAEATVIYV 95 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i------~G--ip~y-~------sl~el~~~~~iDlavi~v 95 (306)
+|.|.|++|-.|+...+.|.+.|++++..........+ . .+ +..+ - ++.++.+..++|++|-+.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A 81 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence 69999999999999999999999997744221110000 0 01 1111 1 233443323489998654
Q ss_pred Cc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 96 PP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 96 p~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.. ..+..+++.|.+.|++.++.+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS 124 (338)
T 1udb_A 82 GLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS 124 (338)
T ss_dssp SCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred ccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 31 11234566777789988877664
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.68 Score=40.04 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=25.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
+++.|.|+++-.|+...+.|.+.|++++.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~ 30 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVG 30 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999763
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=89.66 E-value=1.1 Score=40.19 Aligned_cols=87 Identities=11% Similarity=0.099 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce---ecCeecc-CC-------HHhhhhcCCCcEEEEecCc-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT---HLDLPVF-NT-------VKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~---i~Gip~y-~s-------l~el~~~~~iDlavi~vp~- 97 (306)
++|.|.|++|-.|+...+.|.+. |+++++.......... ..++..+ -+ +.++.+. +|++|-+...
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~d~vih~A~~~ 78 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKK--CDVVLPLVAIA 78 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHH--CSEEEECBCCC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccC--CCEEEEccccc
Confidence 47999999999999999999997 8997754332110000 1122222 12 3444444 8999875321
Q ss_pred --h---------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --P---------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --~---------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
. ....+++.|.+.| +.++.+++
T Consensus 79 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS 117 (345)
T 2bll_A 79 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST 117 (345)
T ss_dssp CHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred CccchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence 1 2345677788888 66776665
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.42 Score=43.57 Aligned_cols=89 Identities=17% Similarity=0.142 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCCc---eecCeeccC------CHHhhhhc---CCCcEEEEecC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGGK---THLDLPVFN------TVKEARDA---TGAEATVIYVP 96 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g~---~i~Gip~y~------sl~el~~~---~~iDlavi~vp 96 (306)
.++|.|.|++|-.|+...+.|.+.| ++++....... .. .+.++.+.. +++++.+. .++|++|-+..
T Consensus 46 ~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~A~ 124 (357)
T 2x6t_A 46 GRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD-GTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA 124 (357)
T ss_dssp --CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSS-GGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCC-cchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEECCc
Confidence 4789999999999999999999999 78764433221 11 111211111 23444431 04899987643
Q ss_pred ch----------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 PP----------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~~----------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.. .+..+++.|.+.|+ .++.+++
T Consensus 125 ~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS 163 (357)
T 2x6t_A 125 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASS 163 (357)
T ss_dssp CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred ccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcc
Confidence 21 24567788888888 4554554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.58 E-value=0.35 Score=44.32 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCCceec--------C------eecc-CCHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGGKTHL--------D------LPVF-NTVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g~~i~--------G------ip~y-~sl~el~~~~~iDlavi 93 (306)
++|+|+|+ |.+|......+.+.|+ +++ .+|.+. +... + ..+. .+.+++ . +.|++|+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~-l~D~~~--~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~-~--~aDvVii 73 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMV-LIDVDK--KRAEGDALDLIHGTPFTRRANIYAGDYADL-K--GSDVVIV 73 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSSH--HHHHHHHHHHHHHGGGSCCCEEEECCGGGG-T--TCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEE-EEeCCh--HHHHHHHHHHHhhhhhcCCcEEEeCCHHHh-C--CCCEEEE
Confidence 47999999 9999988888888787 654 666542 1111 1 1121 233333 2 4899999
Q ss_pred ecCchh----------------HHHHHHHHHHcCCCEEEEe
Q psy8894 94 YVPPPG----------------AAKAIHEALDAEMPLIVCI 118 (306)
Q Consensus 94 ~vp~~~----------------~~~~~~e~~~~Gi~~vvi~ 118 (306)
++|... ..++++++.+...+.+++.
T Consensus 74 av~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~ 114 (319)
T 1a5z_A 74 AAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114 (319)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Confidence 998643 3566677766655554443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=0.9 Score=41.06 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=53.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---e---cCeeccC-CHHhhhhcCCCcEEEEecCchh-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---H---LDLPVFN-TVKEARDATGAEATVIYVPPPG- 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i---~Gip~y~-sl~el~~~~~iDlavi~vp~~~- 99 (306)
+.++|.|.|++|-.|+...+.|.+.|+++++........ .. . .++.++. ++.+-.- .++|++|-+.....
T Consensus 26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~d~vih~A~~~~~ 104 (343)
T 2b69_A 26 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLY-IEVDQIYHLASPASP 104 (343)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCC-CCCSEEEECCSCCSH
T ss_pred CCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhh-cCCCEEEECccccCc
Confidence 457899999999999999999999999987543211100 00 0 1222221 2222111 24899987653211
Q ss_pred -----------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 100 -----------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 100 -----------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+..+++.|.+.|++ ++.+++
T Consensus 105 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~v~~SS 141 (343)
T 2b69_A 105 PNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR-LLLAST 141 (343)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEEE
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCc-EEEECc
Confidence 34567778788885 444453
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.35 Score=44.56 Aligned_cols=31 Identities=23% Similarity=0.448 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
++|.|.|++|-.|+...+.|.+.|+++++..
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~ 59 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLI 59 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 5899999999999999999999999977543
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=89.34 E-value=0.93 Score=40.28 Aligned_cols=31 Identities=29% Similarity=0.354 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
++|.|.|++|-.|+...+.|.+.|+++++.+
T Consensus 2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~ 32 (322)
T 2p4h_X 2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTI 32 (322)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECChhHHHHHHHHHHHHCCCEEEEEE
Confidence 5799999999999999999999999987554
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.34 Score=43.89 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPG 64 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~ 64 (306)
+++|+|+|+ |.+|......|...|+ +++ .++.+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~-l~d~~ 41 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIV-LEDIA 41 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCC
Confidence 468999999 9999988888888887 654 66654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.98 Score=38.43 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeecc-CC------HHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVF-NT------VKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y-~s------l~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|+ |+.|+...+.|.+.|++++ .++.+... ++ ..|.+++ .+ +.++.- .+.|+++++++.+.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~-vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i-~~ad~vi~~~~~d~ 77 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVV-IINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEV-SKNDVVVILTPRDE 77 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEE-EEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTC-CTTCEEEECCSCHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEE-EEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCc-ccCCEEEEecCCcH
Confidence 36999998 9999999999999999876 55544210 11 1244332 22 223211 25899999999887
Q ss_pred HHHHHHHHHH--cCCCEEEEecC
Q psy8894 100 AAKAIHEALD--AEMPLIVCITE 120 (306)
Q Consensus 100 ~~~~~~e~~~--~Gi~~vvi~t~ 120 (306)
....+...++ .+...++.-+.
T Consensus 78 ~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 78 VNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp HHHHHHHHHHHTSCCCEEEECCC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe
Confidence 6666555554 47777765443
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=1.1 Score=40.29 Aligned_cols=89 Identities=19% Similarity=0.233 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCCC--c---eec----Ceec-------cCCHHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKGG--K---THL----DLPV-------FNTVKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~g--~---~i~----Gip~-------y~sl~el~~~~~iDlav 92 (306)
.++|.|.|++|-.|+...+.|++.|+++++.+ ++.... . ++. ++.. ..++.++.+. +|+++
T Consensus 5 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~--~d~Vi 82 (337)
T 2c29_D 5 SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKG--CTGVF 82 (337)
T ss_dssp -CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTT--CSEEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcC--CCEEE
Confidence 46899999999999999999999999987544 332100 0 000 1221 2234455543 89888
Q ss_pred EecCc--------h---------hHHHHHHHHHHcC-CCEEEEecC
Q psy8894 93 IYVPP--------P---------GAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 93 i~vp~--------~---------~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
-+..+ . .+..+++.|.+.+ ++.++..++
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS 128 (337)
T 2c29_D 83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS 128 (337)
T ss_dssp ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence 64321 0 1244667777777 888887665
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.82 Score=41.58 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=48.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCC---Cc--ee-c------Ceecc-CCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKG---GK--TH-L------DLPVF-NTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~---g~--~i-~------Gip~y-~sl~el~~~~~iDlavi~v 95 (306)
++|+|+|+ |.+|......+...|+ +++ .+|.+.. +. ++ . ..++. .+.+++. +.|++|+++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~-L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~---~aDvVIi~~ 75 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELV-LVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELA---DAQVVILTA 75 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGT---TCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhC---CCCEEEEcC
Confidence 47999999 9999888777777787 654 6655431 00 00 1 11222 2333332 489999998
Q ss_pred Cchh----------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 96 PPPG----------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 96 p~~~----------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+... ..++++++.+...+.+++..+
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 76 GANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 5433 255666666666565554433
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=88.34 E-value=1.3 Score=41.24 Aligned_cols=86 Identities=15% Similarity=0.177 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC--------------CCc------------eecC--eecc--CCH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK--------------GGK------------THLD--LPVF--NTV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~--------------~g~------------~i~G--ip~y--~sl 79 (306)
.+|+|-|+ |+.|+.+.|.+.+. ++++++.-||.. .|. .+.| ++++ .+.
T Consensus 2 ~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~dp 80 (332)
T 3pym_A 2 VRVAINGF-GRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMFKYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERDP 80 (332)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred eEEEEECC-CcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEEeeccc
Confidence 47999999 99999999977765 788887666621 011 1234 4455 356
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++- +.++|+++-++......+-+...++.|.|.+++
T Consensus 81 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 119 (332)
T 3pym_A 81 ANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVI 119 (332)
T ss_dssp GGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEE
T ss_pred ccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEE
Confidence 67653 236999999999999999999999999998886
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=88.32 E-value=0.64 Score=40.30 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=50.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCee----ccCCHHhhhhcCCCcEEEEecCch---------
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLP----VFNTVKEARDATGAEATVIYVPPP--------- 98 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip----~y~sl~el~~~~~iDlavi~vp~~--------- 98 (306)
+|.|.|++|..|+...+.|.+ |++++....... .. .+++ -..++.++.+..++|++|-+....
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~--~~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~ 77 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE-RHEVIKVYNSSE--IQ-GGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEK 77 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSC--CT-TCEECCTTSHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCH
T ss_pred EEEEECCCChhHHHHHHHHhc-CCeEEEecCCCc--CC-CCceeccCCHHHHHHHHHhcCCCEEEECCcccChhhhhhCH
Confidence 699999999999999998885 888764432211 11 1211 111233433322489998765421
Q ss_pred ---------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ---------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ---------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.|++ ++.+++
T Consensus 78 ~~~~~~n~~~~~~l~~~~~~~~~~-iv~~SS 107 (273)
T 2ggs_A 78 EKAYKINAEAVRHIVRAGKVIDSY-IVHIST 107 (273)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTTCE-EEEEEE
T ss_pred HHHHHHhHHHHHHHHHHHHHhCCe-EEEEec
Confidence 245677777777874 554554
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=88.26 E-value=0.22 Score=46.87 Aligned_cols=92 Identities=14% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC--------------C---------CCc--eecC--eeccC--C
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG--------------K---------GGK--THLD--LPVFN--T 78 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~--------------~---------~g~--~i~G--ip~y~--s 78 (306)
..+.+|+|.|+ |+.|+...+.+.+.++++++.-+|. + .++ .+.| ++++. +
T Consensus 19 ~~~~kVaInGf-GrIGr~vlr~l~e~~~~ivaIndl~d~~~~a~llkydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~d 97 (356)
T 3hja_A 19 PGSMKLAINGF-GRIGRNVFKIAFERGIDIVAINDLTDPKTLAHLLKYDSTFGVYNKKVESRDGAIVVDGREIKIIAERD 97 (356)
T ss_dssp ---CEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred CCCeEEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCCCHHHhhhhhccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence 44678999999 9999999998888889987654443 0 001 1334 34554 4
Q ss_pred HHhhhh-cCCCcEEEEecCchhH----HHHHHHHHH-cCCCEEEEecC
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGA----AKAIHEALD-AEMPLIVCITE 120 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~----~~~~~e~~~-~Gi~~vvi~t~ 120 (306)
.++++- +.++|+++.++..... .+-+...++ .|.+.++|=.+
T Consensus 98 p~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsap 145 (356)
T 3hja_A 98 PKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVP 145 (356)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSC
T ss_pred hhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCC
Confidence 566552 2359999998876666 666677778 89998876333
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=88.19 E-value=0.46 Score=43.70 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCc-e----e----cCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGK-T----H----LDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~-~----i----~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+.++++|+|+ |.+|+...+.+.+ .+.+.+...|+..... + . ..+. +.+++++. + .|+++.+||..
T Consensus 124 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~--aDvVi~aTp~~ 198 (322)
T 1omo_A 124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-R--CDVLVTTTPSR 198 (322)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-S--SSEEEECCCCS
T ss_pred CCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-C--CCEEEEeeCCC
Confidence 4679999999 9999998888877 4677666888764111 1 1 1245 78888887 6 99999999975
Q ss_pred hHHHHH-HHHHHcCCC
Q psy8894 99 GAAKAI-HEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~-~e~~~~Gi~ 113 (306)
. .++ .++++.|..
T Consensus 199 ~--pv~~~~~l~~G~~ 212 (322)
T 1omo_A 199 K--PVVKAEWVEEGTH 212 (322)
T ss_dssp S--CCBCGGGCCTTCE
T ss_pred C--ceecHHHcCCCeE
Confidence 3 333 345566654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.90 E-value=0.97 Score=39.91 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=51.2
Q ss_pred ccccccccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE
Q psy8894 12 KVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT 91 (306)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla 91 (306)
+-+...+...++..+..+.+++.|.|+++-.|+...+.|.+.|++++....... +... .. .+++.. ...++.
T Consensus 9 ~~~~~~~~~~~~~~m~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~--~~~~--~~---~~~~~~-~~~~~~ 80 (267)
T 3u5t_A 9 SGVDLGTENLYFQSMMETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKA--AAAE--EV---AGKIEA-AGGKAL 80 (267)
T ss_dssp ------------------CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCS--HHHH--HH---HHHHHH-TTCCEE
T ss_pred cccccccccccccccccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCH--HHHH--HH---HHHHHh-cCCeEE
Confidence 334444445555555556788999999999999999999999999763323221 1110 01 111111 112222
Q ss_pred ---EEecCchhHHHHHHHHHHc--CCCEEEEecCCC
Q psy8894 92 ---VIYVPPPGAAKAIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 92 ---vi~vp~~~~~~~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
.+.+.++.+.++++++.+. ++..+++ ..|+
T Consensus 81 ~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lvn-nAG~ 115 (267)
T 3u5t_A 81 TAQADVSDPAAVRRLFATAEEAFGGVDVLVN-NAGI 115 (267)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCEEEEEE-CCCC
T ss_pred EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE-CCCC
Confidence 2345667777778777764 5776654 5554
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=87.85 E-value=0.61 Score=40.19 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee-cCeecc-CC---HHhhhhc--CCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH-LDLPVF-NT---VKEARDA--TGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i-~Gip~y-~s---l~el~~~--~~iDlavi~vp~~~~ 100 (306)
..++|+|+|+ |+.|+...+.|.+.|+ ++ .++.+...- +. .|+.++ .+ .+.+.+. .+.|+++++++.+..
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~-vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~ 84 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FV-LAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE 84 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EE-EESCGGGHHHHHHTTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EE-EEECCHHHHHHHhcCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH
Confidence 3568999999 9999888898888888 55 777653100 01 344432 22 2222111 248999999988654
Q ss_pred H-HHHHHHHHcCCC-EEEEec
Q psy8894 101 A-KAIHEALDAEMP-LIVCIT 119 (306)
Q Consensus 101 ~-~~~~e~~~~Gi~-~vvi~t 119 (306)
- .++..+.+.+.+ .++.-.
T Consensus 85 n~~~~~~a~~~~~~~~iia~~ 105 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIAEA 105 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEE
Confidence 3 344556667776 555433
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=87.76 E-value=1 Score=38.51 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|-.|+...+.|.+.|++++..
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~ 31 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGI 31 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999997643
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=87.44 E-value=0.25 Score=44.07 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=64.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCeeccCCHHhhhhcCCCcEEEEecCchhHH---HHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDLPVFNTVKEARDATGAEATVIYVPPPGAA---KAI 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gip~y~sl~el~~~~~iDlavi~vp~~~~~---~~~ 104 (306)
++.|+|+ |.+|+.....|.+.|.+-+..+|++... +++ .+...+.++.+..++ .|++|.++|....+ .+-
T Consensus 110 ~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~--aDiVInatp~gm~p~~~~i~ 186 (253)
T 3u62_A 110 PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKK--AKSLFNTTSVGMKGEELPVS 186 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHT--CSEEEECSSTTTTSCCCSCC
T ss_pred eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcC--CCEEEECCCCCCCCCCCCCC
Confidence 8999999 9999999999999999534477776411 111 122245667676665 99999999853221 111
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCe-EEccCCCcee
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSR-LIGPNCPGII 151 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~-iiGPNc~Gi~ 151 (306)
.+.+..+ ..++=+..+ +.. ++ +.|++.|.+ ++ ||.-.++
T Consensus 187 ~~~l~~~-~~V~Divy~--~T~---ll-~~A~~~G~~~~~-~Gl~MLv 226 (253)
T 3u62_A 187 DDSLKNL-SLVYDVIYF--DTP---LV-VKARKLGVKHII-KGNLMFY 226 (253)
T ss_dssp HHHHTTC-SEEEECSSS--CCH---HH-HHHHHHTCSEEE-CTHHHHH
T ss_pred HHHhCcC-CEEEEeeCC--CcH---HH-HHHHHCCCcEEE-CCHHHHH
Confidence 2334433 233334455 333 22 246778887 54 6654444
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=87.37 E-value=0.53 Score=48.27 Aligned_cols=91 Identities=13% Similarity=-0.072 Sum_probs=55.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------------ecC-------------eeccCCHHhh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------------HLD-------------LPVFNTVKEA 82 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------------i~G-------------ip~y~sl~el 82 (306)
.++|+|||+ |.||......+.+.|++++ .+|.+...-+ -.| +....+++++
T Consensus 312 ~~kV~VIGa-G~MG~~iA~~la~aG~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~~~ 389 (725)
T 2wtb_A 312 IKKVAIIGG-GLMGSGIATALILSNYPVI-LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYESF 389 (725)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHTTTCCEE-EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSGGG
T ss_pred CcEEEEEcC-CHhhHHHHHHHHhCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHHHH
Confidence 367999999 9999988889998999965 5555421000 011 2333455443
Q ss_pred hhcCCCcEEEEecCchhH--HHHHHHHHHc-CCCEEEE-ecCCCChh
Q psy8894 83 RDATGAEATVIYVPPPGA--AKAIHEALDA-EMPLIVC-ITEGIPQL 125 (306)
Q Consensus 83 ~~~~~iDlavi~vp~~~~--~~~~~e~~~~-Gi~~vvi-~t~Gf~e~ 125 (306)
. +.|++|.++|.... .+++.++.+. .-+.+++ -|++++.+
T Consensus 390 -~--~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~ 433 (725)
T 2wtb_A 390 -R--DVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN 433 (725)
T ss_dssp -T--TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred -C--CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH
Confidence 3 38999999998753 3455554432 2233432 35676544
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=87.34 E-value=0.58 Score=45.90 Aligned_cols=88 Identities=17% Similarity=0.084 Sum_probs=57.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
-..++|+|+|. |++|+...+.++.+|++++ ..||..... ...|..+ .+++++... .|++++++....... -
T Consensus 275 L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~-v~d~~~~~~~~a~~~G~~~-~~l~ell~~--aDiVi~~~~t~~lI~-~ 348 (494)
T 3d64_A 275 IAGKIAVVAGY-GDVGKGCAQSLRGLGATVW-VTEIDPICALQAAMEGYRV-VTMEYAADK--ADIFVTATGNYHVIN-H 348 (494)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSCHHHHHHHHTTTCEE-CCHHHHTTT--CSEEEECSSSSCSBC-H
T ss_pred cCCCEEEEEcc-CHHHHHHHHHHHHCCCEEE-EEeCChHhHHHHHHcCCEe-CCHHHHHhc--CCEEEECCCcccccC-H
Confidence 35689999999 9999999999999999976 667653101 1135543 479898876 999999985433321 1
Q ss_pred HHHHHcCCCEEEE-ecCC
Q psy8894 105 HEALDAEMPLIVC-ITEG 121 (306)
Q Consensus 105 ~e~~~~Gi~~vvi-~t~G 121 (306)
+......-..+++ ++.|
T Consensus 349 ~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 349 DHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp HHHHHCCTTEEEEECSSS
T ss_pred HHHhhCCCCcEEEEcCCC
Confidence 2233344455554 4444
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.21 E-value=0.57 Score=43.71 Aligned_cols=89 Identities=18% Similarity=0.045 Sum_probs=52.9
Q ss_pred cccccCCCcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCC---Cc--eec-------CeeccCCHHhhhhcCCC
Q psy8894 23 PNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKG---GK--THL-------DLPVFNTVKEARDATGA 88 (306)
Q Consensus 23 ~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~---g~--~i~-------Gip~y~sl~el~~~~~i 88 (306)
|++.+.+.++|+|+|++|..|......+...|. +++ .+|.... |. ++. .+....+..+..+. .
T Consensus 1 ~~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evv-LiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d--A 77 (343)
T 3fi9_A 1 MSLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLC-LYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD--A 77 (343)
T ss_dssp -CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEE-EECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT--E
T ss_pred CCccccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEE-EEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC--C
Confidence 445666678999999989999887766766665 454 6776530 10 011 11222355554443 8
Q ss_pred cEEEEecCc----------------hhHHHHHHHHHHcCCCE
Q psy8894 89 EATVIYVPP----------------PGAAKAIHEALDAEMPL 114 (306)
Q Consensus 89 Dlavi~vp~----------------~~~~~~~~e~~~~Gi~~ 114 (306)
|++|++... ....++++.+.+.+.+.
T Consensus 78 DvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a 119 (343)
T 3fi9_A 78 KYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDC 119 (343)
T ss_dssp EEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999987422 22345566666777666
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=86.98 E-value=0.87 Score=41.25 Aligned_cols=86 Identities=10% Similarity=-0.013 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-----CeEEEeeCCCCCCc-eecCeecc-C------CHHhhhhcCC-CcEEEEecC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-----TKVVGGVSPGKGGK-THLDLPVF-N------TVKEARDATG-AEATVIYVP 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-----~~vv~~VnP~~~g~-~i~Gip~y-~------sl~el~~~~~-iDlavi~vp 96 (306)
++|.|.|++|-.|+...+.|.+.| +++++......... ...++..+ - ++.++.+... +|+++-+..
T Consensus 2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a~ 81 (364)
T 2v6g_A 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVTW 81 (364)
T ss_dssp EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECCC
Confidence 579999999999999999999888 88775543221001 01122222 1 2333333222 899987743
Q ss_pred c-------------hhHHHHHHHHHHc--CCCEEE
Q psy8894 97 P-------------PGAAKAIHEALDA--EMPLIV 116 (306)
Q Consensus 97 ~-------------~~~~~~~~e~~~~--Gi~~vv 116 (306)
. ..+..+++.|.+. +++.++
T Consensus 82 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v 116 (364)
T 2v6g_A 82 ANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116 (364)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEE
T ss_pred CCcchHHHHHHHhHHHHHHHHHHHHHhccccceEE
Confidence 2 2245667777776 788876
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=86.97 E-value=0.94 Score=42.23 Aligned_cols=87 Identities=21% Similarity=0.181 Sum_probs=63.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC------------------CC-c---------eecC--eecc--
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK------------------GG-K---------THLD--LPVF-- 76 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~------------------~g-~---------~i~G--ip~y-- 76 (306)
+.+|+|-|+ |+.|+.+.|.+.+. ++++++.-||.. .| + .+.| +++|
T Consensus 3 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e 81 (337)
T 3v1y_O 3 KIKIGINGF-GRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHHHCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEECC-ChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHhhhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence 468999999 99999999987765 677887666621 11 0 1223 3454
Q ss_pred CCHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 77 NTVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 77 ~sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.+.++++- +.++|+++-++......+-+...++.|.|.+++
T Consensus 82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 123 (337)
T 3v1y_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVI 123 (337)
T ss_dssp SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEE
T ss_pred cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEE
Confidence 34666652 135999999999999999999999999998886
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=86.90 E-value=1.5 Score=39.90 Aligned_cols=84 Identities=13% Similarity=0.141 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEeeCCCCCCc-----ee-cC---------eeccCCHHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGVSPGKGGK-----TH-LD---------LPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~VnP~~~g~-----~i-~G---------ip~y~sl~el~~~~~iDlavi 93 (306)
++|+|+|+ |.+|......+.+. |.+++ .+|.+...- ++ .. +....+++++. +.|++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~---~aDvVii 75 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTA---NSDIVII 75 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGT---TCSEEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHC---CCCEEEE
Confidence 37999999 99998877666664 67765 555543100 01 11 22234566643 3899999
Q ss_pred ecCchh----------------HHHHHHHHHHcCCCEEEEec
Q psy8894 94 YVPPPG----------------AAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 94 ~vp~~~----------------~~~~~~e~~~~Gi~~vvi~t 119 (306)
++|... ..++++.+.+.+.+..++.-
T Consensus 76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~ 117 (310)
T 1guz_A 76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117 (310)
T ss_dssp CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 986431 23555555556555544433
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.63 E-value=2.6 Score=36.49 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVV 58 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv 58 (306)
+.+++.|.|+++-.|+...+.|.+.|++++
T Consensus 18 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~ 47 (249)
T 1o5i_A 18 RDKGVLVLAASRGIGRAVADVLSQEGAEVT 47 (249)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 357899999999999999999999999976
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=86.60 E-value=4 Score=37.27 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCC---CCc--ee-c------CeeccC-CHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGK---GGK--TH-L------DLPVFN-TVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~---~g~--~i-~------Gip~y~-sl~el~~~~~iDlavi 93 (306)
++.+|+|+|+ |..|....-.+...+. +++ .+|.+. .|. ++ . ...+.. +.+++. +.|++|+
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~-L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~---~aDvVii 80 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELV-LIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK---DCDVIVV 80 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEE-EECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT---TCSEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEE-EEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC---CCCEEEE
Confidence 4679999999 8888776656666665 554 555432 110 01 1 122222 223332 4899999
Q ss_pred ecCchh----------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 94 YVPPPG----------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 94 ~vp~~~----------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+++... ..++++++.+...+++++..+
T Consensus 81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp CCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 877544 456777777766666665543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=1.6 Score=40.50 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC-----------CHHhhhhcCCCcEEEEecCch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN-----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~-----------sl~el~~~~~iDlavi~vp~~ 98 (306)
..+|+|+|+ |-.|..+.++|...|..-+..+|+......-.+-..|- .+.+...+..|++-+...+..
T Consensus 36 ~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~ 114 (346)
T 1y8q_A 36 ASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTED 114 (346)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecc
Confidence 578999999 88899999999999997666888765322111111111 111111222355555444432
Q ss_pred hHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 99 GAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 99 ~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
... ..++.. .+...|+. +.. +.+ ....+.++|+++++.++--.+.|+.
T Consensus 115 ~~~-~~~~~~-~~~dvVv~-~~d-~~~-~r~~ln~~~~~~~ip~i~~~~~G~~ 162 (346)
T 1y8q_A 115 IEK-KPESFF-TQFDAVCL-TCC-SRD-VIVKVDQICHKNSIKFFTGDVFGYH 162 (346)
T ss_dssp GGG-CCHHHH-TTCSEEEE-ESC-CHH-HHHHHHHHHHHTTCEEEEEEEEBTE
T ss_pred cCc-chHHHh-cCCCEEEE-cCC-CHH-HHHHHHHHHHHcCCCEEEEeecccE
Confidence 211 122332 46776664 332 222 2334456889999988866666654
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=86.40 E-value=2.9 Score=40.44 Aligned_cols=108 Identities=13% Similarity=0.180 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCCc-ee--------------------cCeeccCCHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGGK-TH--------------------LDLPVFNTVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g~-~i--------------------~Gip~y~sl~ 80 (306)
+-++|+|.|. |+.|....+.|.+.|.++|+. +||+..-. ++ .|...++ -+
T Consensus 234 ~Gk~vaVQG~-GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~-~~ 311 (450)
T 4fcc_A 234 EGMRVSVSGS-GNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE-GQ 311 (450)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE-TC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec-Cc
Confidence 3689999998 999999999999999998864 45542100 00 0111111 11
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
++-. .++|+++=| +...-..+.++.+.+.|++.|+-.+-+....+..+ +-+++|+.++
T Consensus 312 ~i~~-~~~DI~iPcAl~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA~~----iL~~rGIl~~ 370 (450)
T 4fcc_A 312 QPWS-VPVDIALPCATQNELDVDAAHQLIANGVKAVAEGANMPTTIEATE----LFQQAGVLFA 370 (450)
T ss_dssp CGGG-SCCSEEEECSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHH----HHHHTTCEEE
T ss_pred cccc-CCccEEeeccccccccHHHHHHHHhcCceEEecCCCCCCCHHHHH----HHHHCCCEEE
Confidence 1211 258999877 55566678889999999998775555554444433 3467776554
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.37 E-value=0.48 Score=44.58 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.+.++|.|.|++|-.|+.+.+.|.+.|+++++.+
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~ 100 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFI 100 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 3457899999999999999999988899877554
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.52 Score=41.80 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=53.6
Q ss_pred ccccccccccccccc----cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCC
Q psy8894 12 KVAEEIYAATRPNLR----LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATG 87 (306)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~ 87 (306)
.++++.|....++.+ -.+.+++.|.|+++-+|+...+.|.+.|++++....... +.. -...+++.+. +
T Consensus 9 ~~~~~~~~~~~~~~mm~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~--~~~-----~~~~~~l~~~-~ 80 (271)
T 3v2g_A 9 SGVDLGTENLYFQSMMTSISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAA--ERA-----QAVVSEIEQA-G 80 (271)
T ss_dssp -----------CHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHH-----HHHHHHHHHT-T
T ss_pred ccccccccccchhhhccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCH--HHH-----HHHHHHHHhc-C
Confidence 455666665554322 234578999999999999999999999999763322221 110 0111222211 1
Q ss_pred CcEE---EEecCchhHHHHHHHHHHc--CCCEEEEecCCC
Q psy8894 88 AEAT---VIYVPPPGAAKAIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 88 iDla---vi~vp~~~~~~~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
.++. .+.+-++.+.++++++.+. ++..+++ ..|.
T Consensus 81 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn-nAg~ 119 (271)
T 3v2g_A 81 GRAVAIRADNRDAEAIEQAIRETVEALGGLDILVN-SAGI 119 (271)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE-CCCC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHcCCCcEEEE-CCCC
Confidence 2322 2345667777777777764 6887765 5554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=0.63 Score=44.44 Aligned_cols=81 Identities=19% Similarity=0.281 Sum_probs=51.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c--eecCeecc-CC------HHhhhhcCCCcEEEEecCchh
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K--THLDLPVF-NT------VKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~--~i~Gip~y-~s------l~el~~~~~iDlavi~vp~~~ 99 (306)
..+|+|+|+ |+.|+.+.+.|.+.|++++ .|+.+... + .-.|++++ .+ |.++.- .+.|++|++++...
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vv-vId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi-~~A~~viv~~~~~~ 80 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMV-VLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGA-AKAEVLINAIDDPQ 80 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEE-EEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTT-TTCSEEEECCSSHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEE-EEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCC-CccCEEEECCCChH
Confidence 457999999 9999999999999999976 55554300 0 12366655 22 333311 24899999998754
Q ss_pred H-HHHHHHHHHcCCC
Q psy8894 100 A-AKAIHEALDAEMP 113 (306)
Q Consensus 100 ~-~~~~~e~~~~Gi~ 113 (306)
. ..++..+.+.+.+
T Consensus 81 ~n~~i~~~ar~~~p~ 95 (413)
T 3l9w_A 81 TNLQLTEMVKEHFPH 95 (413)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 4 3344555555544
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=85.88 E-value=0.61 Score=41.45 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=51.7
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEE---EecCchhHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATV---IYVPPPGAAK 102 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlav---i~vp~~~~~~ 102 (306)
.+.+.+++.|.|+++-+|+...+.|.+.|++++ .++.+. +.. -...+++.+. ..++.. +.+.++.+.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~-~~~r~~--~~~-----~~~~~~l~~~-~~~~~~~~~Dv~d~~~v~~ 90 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVY-GCARDA--KNV-----SAAVDGLRAA-GHDVDGSSCDVTSTDEVHA 90 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEE-EEESCH--HHH-----HHHHHHHHTT-TCCEEEEECCTTCHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEeCCH--HHH-----HHHHHHHHhc-CCcEEEEECCCCCHHHHHH
Confidence 344578899999999999999999999999976 444332 111 1112223221 223322 3456677777
Q ss_pred HHHHHHHc--CCCEEEEecCCC
Q psy8894 103 AIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 103 ~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
.++++.+. ++..+++ ..|.
T Consensus 91 ~~~~~~~~~g~id~lv~-nAg~ 111 (279)
T 3sju_A 91 AVAAAVERFGPIGILVN-SAGR 111 (279)
T ss_dssp HHHHHHHHHCSCCEEEE-CCCC
T ss_pred HHHHHHHHcCCCcEEEE-CCCC
Confidence 77777764 6887665 5555
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=85.82 E-value=1.6 Score=40.12 Aligned_cols=89 Identities=8% Similarity=-0.068 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCC-------eEEEeeCCC----C---CC----------ceecCeeccCCHHhhhh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGT-------KVVGGVSPG----K---GG----------KTHLDLPVFNTVKEARD 84 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~-------~vv~~VnP~----~---~g----------~~i~Gip~y~sl~el~~ 84 (306)
++++|+|+|++|..|+.....|...|+ +++ .+|.. . .+ .....+....++.+..+
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~-l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ-LLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEE-EEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 468999999999999887777766664 444 56654 1 00 01112333355655554
Q ss_pred cCCCcEEEEecCc----------------hhHHHHHHHHHHcC-CCEEEEecC
Q psy8894 85 ATGAEATVIYVPP----------------PGAAKAIHEALDAE-MPLIVCITE 120 (306)
Q Consensus 85 ~~~iDlavi~vp~----------------~~~~~~~~e~~~~G-i~~vvi~t~ 120 (306)
. .|+++++... ....++++.+.+.+ .++.+++.+
T Consensus 83 ~--aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S 133 (329)
T 1b8p_A 83 D--ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG 133 (329)
T ss_dssp T--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred C--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 3 8999986431 12456778888885 774444443
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.4 Score=38.58 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=52.5
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEE---EecCchhHHH
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATV---IYVPPPGAAK 102 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlav---i~vp~~~~~~ 102 (306)
.+.+.+++.|.|+++..|+...+.|.+.|++++.....+. +... .. .+++.+. ..++.. +.+..+.+..
T Consensus 22 ~m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~--~~~~--~~---~~~~~~~-~~~~~~~~~Dl~~~~~v~~ 93 (272)
T 4e3z_A 22 SMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR--EAAD--AV---VAAITES-GGEAVAIPGDVGNAADIAA 93 (272)
T ss_dssp --CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH--HHHH--HH---HHHHHHT-TCEEEEEECCTTCHHHHHH
T ss_pred hccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh--hHHH--HH---HHHHHhc-CCcEEEEEcCCCCHHHHHH
Confidence 3445678999999999999999999999999753334332 1110 01 1122211 123322 3455666777
Q ss_pred HHHHHHHc--CCCEEEEecCCC
Q psy8894 103 AIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 103 ~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
+++++.+. ++..+++ ..|+
T Consensus 94 ~~~~~~~~~g~id~li~-nAg~ 114 (272)
T 4e3z_A 94 MFSAVDRQFGRLDGLVN-NAGI 114 (272)
T ss_dssp HHHHHHHHHSCCCEEEE-CCCC
T ss_pred HHHHHHHhCCCCCEEEE-CCCC
Confidence 77777664 6887665 5554
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=85.41 E-value=5.4 Score=36.22 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCC--Cce--e-----cCeeccCCHHhhhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKG--GKT--H-----LDLPVFNTVKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~--g~~--i-----~Gip~y~sl~el~~~~~iDlavi~vp~- 97 (306)
.++|+|+|+ |.+|......+...|+ +++ .+|.+.. +.. + ..+..+.+++++. +.|++|++...
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~-L~Di~~~~~g~a~dl~~~~~~~i~~t~d~~~l~---~aD~Vi~aag~~ 88 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLV-LLDLSEGTKGATMDLEIFNLPNVEISKDLSASA---HSKVVIFTVNSL 88 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECCC-----CHHHHHHHTCTTEEEESCGGGGT---TCSEEEECCCC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEE-EEcCCcchHHHHHHHhhhcCCCeEEeCCHHHHC---CCCEEEEcCCCC
Confidence 368999998 9888877666666666 554 6555431 110 0 1344445665554 38999998622
Q ss_pred --------------hhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 98 --------------PGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 98 --------------~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
+...++++++.+...++++++.+.
T Consensus 89 ~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 89 GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 225567777777666766555544
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=85.26 E-value=8.7 Score=36.79 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=39.8
Q ss_pred CCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCCc----eecCeeccC--CHHhhhhcCCCcEEEEe
Q psy8894 28 TSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGGK----THLDLPVFN--TVKEARDATGAEATVIY 94 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip~y~--sl~el~~~~~iDlavi~ 94 (306)
++.++|.|+|. |..|.. ..+.|.+.|+++. +.|-+.... +..|++++. +.+.+ . +.|++|+.
T Consensus 16 ~~~~~i~viG~-G~sG~s~~A~~l~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~g~~~~~~-~--~a~~vv~s 84 (475)
T 1p3d_A 16 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIADGVVTQRLAQAGAKIYIGHAEEHI-E--GASVVVVS 84 (475)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESCCSHHHHHHHHTTCEEEESCCGGGG-T--TCSEEEEC
T ss_pred ccCCEEEEEee-cHHHHHHHHHHHHhCCCEEE-EECCCCCHHHHHHHhCCCEEECCCCHHHc-C--CCCEEEEC
Confidence 45678999999 999986 6788888899876 555432100 124666652 22333 2 37887764
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.14 E-value=1.7 Score=38.91 Aligned_cols=88 Identities=16% Similarity=0.131 Sum_probs=52.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC--CeEEEeeCCCCCC--cee------cCeecc-CC------HHhhhhcCCCcEEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG--TKVVGGVSPGKGG--KTH------LDLPVF-NT------VKEARDATGAEATVI 93 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g--~~vv~~VnP~~~g--~~i------~Gip~y-~s------l~el~~~~~iDlavi 93 (306)
++|.|.|++|-.|+...+.|.+.| ++++........+ +.+ .++..+ -+ +.++.. ++|++|-
T Consensus 4 m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vih 81 (336)
T 2hun_A 4 MKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVR--KVDGVVH 81 (336)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHH--TCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhh--CCCEEEE
Confidence 579999999999999999988875 8876443211000 111 122222 12 344443 4999987
Q ss_pred ecCch------------------hHHHHHHHHHHcCC-CEEEEecC
Q psy8894 94 YVPPP------------------GAAKAIHEALDAEM-PLIVCITE 120 (306)
Q Consensus 94 ~vp~~------------------~~~~~~~e~~~~Gi-~~vvi~t~ 120 (306)
+.... .+..+++.|.+.+. +.++.+++
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS 127 (336)
T 2hun_A 82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVST 127 (336)
T ss_dssp CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecc
Confidence 65431 23456777777775 56666664
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=85.03 E-value=0.69 Score=45.18 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=49.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~ 99 (306)
-..++|+|+|. |++|+...+.++.+|++++ ..||..... .-.|+.+ .+++++... .|++++++....
T Consensus 255 l~GktVgIIG~-G~IG~~vA~~l~~~G~~Vi-v~d~~~~~~~~a~~~g~~~-~~l~ell~~--aDiVi~~~~t~~ 324 (479)
T 1v8b_A 255 ISGKIVVICGY-GDVGKGCASSMKGLGARVY-ITEIDPICAIQAVMEGFNV-VTLDEIVDK--GDFFITCTGNVD 324 (479)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHHTCEEE-EECSCHHHHHHHHTTTCEE-CCHHHHTTT--CSEEEECCSSSS
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhCcCEEE-EEeCChhhHHHHHHcCCEe-cCHHHHHhc--CCEEEECCChhh
Confidence 35689999998 9999999999999999976 677664111 1235543 479888876 999999864433
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=2 Score=39.45 Aligned_cols=86 Identities=13% Similarity=0.065 Sum_probs=52.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCc-----eec--------C--eeccCCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGK-----THL--------D--LPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~-----~i~--------G--ip~y~sl~el~~~~~iDlavi 93 (306)
.++|+|+|+ |.+|......+...|+ + +..+|.+...- ++. . +....+++++. +.|++|+
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~---~aD~Vi~ 78 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLA---GADVVIV 78 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGT---TCSEEEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhC---CCCEEEE
Confidence 468999999 9999887777777787 7 45766543100 010 1 22224564443 3899999
Q ss_pred ec--Cch-------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 94 YV--PPP-------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 94 ~v--p~~-------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++ |.. ...++.+++.+..-++++++.+
T Consensus 79 a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 79 TAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp CCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred eCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 97 421 3455666666666665554443
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=84.86 E-value=2.4 Score=38.14 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=61.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee--cCeeccCCHHhhhhcCCCcEEEEecCchhH------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH--LDLPVFNTVKEARDATGAEATVIYVPPPGA------ 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i--~Gip~y~sl~el~~~~~iDlavi~vp~~~~------ 100 (306)
.+++.|+|+ |.+|+.....|.+.|.++ ..+|+..... ++ .|+.+. +++++. +.|++|-+||....
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v-~V~nRt~~ka~~la~~~~~~~-~~~~l~---~~DiVInaTp~Gm~~~~~l~ 191 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQV-SVLNRSSRGLDFFQRLGCDCF-MEPPKS---AFDLIINATSASLHNELPLN 191 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEE-EEECSSCTTHHHHHHHTCEEE-SSCCSS---CCSEEEECCTTCCCCSCSSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEE-EEEeCCHHHHHHHHHCCCeEe-cHHHhc---cCCEEEEcccCCCCCCCCCC
Confidence 679999999 999999999999999554 4788765211 11 133322 244554 38999999886422
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.+.+.+.+..+. .++=+.... ++. ++ +.|++.|.+++
T Consensus 192 ~~~l~~~l~~~~-~v~D~vY~P-~T~---ll-~~A~~~G~~~~ 228 (269)
T 3phh_A 192 KEVLKGYFKEGK-LAYDLAYGF-LTP---FL-SLAKELKTPFQ 228 (269)
T ss_dssp HHHHHHHHHHCS-EEEESCCSS-CCH---HH-HHHHHTTCCEE
T ss_pred hHHHHhhCCCCC-EEEEeCCCC-chH---HH-HHHHHCcCEEE
Confidence 233333444432 233244443 333 33 35788888766
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=4.4 Score=37.59 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC--ceecC---eeccCC---HHhhhhcCCCcEEEEecCchh
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG--KTHLD---LPVFNT---VKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g--~~i~G---ip~y~s---l~el~~~~~iDlavi~vp~~~ 99 (306)
.+.++|+|+|. |..|+...+.+++.|++++ .+||.... ..+.. ..-|.+ +.++.+. +|++... ....
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi-~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~--~dvI~~~-~e~~ 86 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIA-VLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEI--SDVVTYE-FENI 86 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHT--CSEEEES-CCCC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEE-EEeCCCCCchHHhCCceEecCcCCHHHHHHHHHh--CCEeeec-cccc
Confidence 35679999998 8888888999999999976 56664311 11111 123334 4455544 7876432 2233
Q ss_pred HHHHHHHHHHcCC
Q psy8894 100 AAKAIHEALDAEM 112 (306)
Q Consensus 100 ~~~~~~e~~~~Gi 112 (306)
..+.++.+.+.|+
T Consensus 87 ~~~~~~~l~~~g~ 99 (389)
T 3q2o_A 87 DYRCLQWLEKHAY 99 (389)
T ss_dssp CHHHHHHHHHHSC
T ss_pred cHHHHHHHHhhCc
Confidence 4455666666653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=84.75 E-value=1.2 Score=38.88 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.++|.|||+ |+.|..-.+.|++.|.++. .|+|..
T Consensus 29 L~gk~VLVVGg-G~va~~ka~~Ll~~GA~Vt-Vvap~~ 64 (223)
T 3dfz_A 29 LKGRSVLVVGG-GTIATRRIKGFLQEGAAIT-VVAPTV 64 (223)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHGGGCCCEE-EECSSC
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EECCCC
Confidence 44688999999 7777777788999998875 788864
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=84.63 E-value=0.41 Score=43.35 Aligned_cols=69 Identities=7% Similarity=0.052 Sum_probs=44.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee-cCee--ccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH-LDLP--VFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i-~Gip--~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+.+++.|+|+ |.+|+.....|.+.|++.+..+|++... +++ ..+. .|.++.++..+ .|++|-+||....
T Consensus 116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~--aDiVInaTp~Gm~ 188 (277)
T 3don_A 116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDE--FDIIINTTPAGMN 188 (277)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGG--CSEEEECCC----
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcC--CCEEEECccCCCC
Confidence 3578999999 8899999999999999533477776411 111 1222 24445554444 8999999987543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=84.58 E-value=1.5 Score=42.06 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--Cc-----eecCeeccCC--HHhhhhcCCCcEEEEe--cCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GK-----THLDLPVFNT--VKEARDATGAEATVIY--VPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~-----~i~Gip~y~s--l~el~~~~~iDlavi~--vp~ 97 (306)
+.++|.|+|. |..|....+.|.+.|+++. +.|.+.. .. +-.|++++.. -+++.+. ++|++|+. +|+
T Consensus 8 ~~k~v~viG~-G~sG~s~A~~l~~~G~~V~-~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~-~~d~vv~spgi~~ 84 (451)
T 3lk7_A 8 ENKKVLVLGL-ARSGEAAARLLAKLGAIVT-VNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDE-DFCYMIKNPGIPY 84 (451)
T ss_dssp TTCEEEEECC-TTTHHHHHHHHHHTTCEEE-EEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGS-CEEEEEECTTSCT
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCCEEE-EEeCCcccCChHHHHHHhCCCEEEECCChHHhhcC-CCCEEEECCcCCC
Confidence 4689999999 9999888899999999976 5555320 00 1247776631 2233221 27988875 443
Q ss_pred hhHHHHHHHHHHcCCC
Q psy8894 98 PGAAKAIHEALDAEMP 113 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~ 113 (306)
+ -+.+.++.++|++
T Consensus 85 ~--~p~~~~a~~~gi~ 98 (451)
T 3lk7_A 85 N--NPMVKKALEKQIP 98 (451)
T ss_dssp T--SHHHHHHHHTTCC
T ss_pred C--ChhHHHHHHCCCc
Confidence 3 3346777777766
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=2.3 Score=39.07 Aligned_cols=32 Identities=19% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
+..+|.|.|++|-.|+...+.|.+.|+++++.
T Consensus 10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~ 41 (404)
T 1i24_A 10 HGSRVMVIGGDGYCGWATALHLSKKNYEVCIV 41 (404)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 45789999999999999999999999997744
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=84.38 E-value=1.5 Score=40.74 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------C----------c--eecC--eecc--CC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------G----------K--THLD--LPVF--NT 78 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g----------~--~i~G--ip~y--~s 78 (306)
.+|+|-|+ |+.|+.+.|.+.+. ++++++.-||... | + .+.| ++++ .+
T Consensus 3 ~kv~INGf-GrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 81 (335)
T 3doc_A 3 VRVAINGF-GRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLLRYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVRN 81 (335)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHHHEETTTEECSSCCEECSSEEESSSSEEEEECCSS
T ss_pred EEEEEECC-CcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHhcccCCCCCCCCeEEEecCEEEECCEEEEEEeecc
Confidence 58999999 99999999877765 5678866555210 1 0 1223 3455 24
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.++++- +.++|+++-++......+-+...++.|.|.+++
T Consensus 82 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (335)
T 3doc_A 82 PAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIV 121 (335)
T ss_dssp TTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred cccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEE
Confidence 566652 236999999999999999999999999998886
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=84.21 E-value=0.33 Score=45.69 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
++++|+|+|+ |.+|+...+.++..|++++ .+|++
T Consensus 167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~-~~d~~ 200 (377)
T 2vhw_A 167 EPADVVVIGA-GTAGYNAARIANGMGATVT-VLDIN 200 (377)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEeCC
Confidence 4789999999 9999999999999999865 66665
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=84.13 E-value=2.4 Score=41.22 Aligned_cols=117 Identities=10% Similarity=0.078 Sum_probs=69.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-------CCCCCCc-ee-----------cCeeccC---------CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-------SPGKGGK-TH-----------LDLPVFN---------TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-------nP~~~g~-~i-----------~Gip~y~---------sl~ 80 (306)
+.++|+|.|. |+.|....+.|.+.|.++|+.. ||+..-. ++ ..+.-|. +-+
T Consensus 251 ~g~~vaVqG~-GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v~~~ 329 (470)
T 2bma_A 251 EKQTAVVSGS-GNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYFPNE 329 (470)
T ss_dssp GGCEEEEECS-SHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEECSSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEecCc
Confidence 3579999998 9999999999999999988654 4542100 11 0111111 001
Q ss_pred hhhhcCCCcEEEEec-CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceec
Q psy8894 81 EARDATGAEATVIYV-PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIA 152 (306)
Q Consensus 81 el~~~~~iDlavi~v-p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~ 152 (306)
++-. .++|+++=|. +..-..+.++.+++.+++.|+=.+-++...+..+ +-+++|+.++ | |+-|++.
T Consensus 330 ~~~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA~~----~L~~rGIl~~-PD~~aNAGGV~~ 400 (470)
T 2bma_A 330 KPWG-VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDAIN----LFKSNNIIYC-PSKAANAGGVAI 400 (470)
T ss_dssp CTTS-SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHHHH----HHHHTTCEEE-CHHHHTTHHHHH
T ss_pred Ceee-cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHHHH----HHHHCCcEEE-ChHHhhCCCcee
Confidence 2222 2589998764 4455577788888889997654444443333332 4467787554 5 4445544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=84.13 E-value=2.3 Score=39.62 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
..+|+|+|+ |..|..+.++|...|..-+..||+..
T Consensus 118 ~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~ 152 (353)
T 3h5n_A 118 NAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQ 152 (353)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 578999999 88999999999999987666888764
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=84.11 E-value=1.9 Score=39.24 Aligned_cols=111 Identities=8% Similarity=0.061 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccC----------CHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN----------TVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~----------sl~el~~~~~iDlavi~vp~~ 98 (306)
+..+|+|+|+ |-.|..+.++|...|..-+..||+......-..-..|. ...+-..+..|++-|...+..
T Consensus 35 ~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~ 113 (292)
T 3h8v_A 35 RTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113 (292)
T ss_dssp GGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCC
T ss_pred hCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEeccc
Confidence 3578999999 88999999999999987666888765221111101121 111211222466666655543
Q ss_pred hH-HHHHHHHHH----------cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 99 GA-AKAIHEALD----------AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 99 ~~-~~~~~e~~~----------~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.. .+.+++..+ .+...|+..+..| +...++.++|.+.++.++
T Consensus 114 l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~---~~R~~in~~c~~~~~Pli 166 (292)
T 3h8v_A 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF---EARMTINTACNELGQTWM 166 (292)
T ss_dssp TTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH---HHHHHHHHHHHHHTCCEE
T ss_pred CCcHHHHHHHhhhhcccccccCCCCCEEEECCcch---hhhhHHHHHHHHhCCCEE
Confidence 32 244444442 5778766544443 223344467888887665
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=83.95 E-value=2.3 Score=38.66 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCCCCc-----ee-c-------C--eeccCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGKGGK-----TH-L-------D--LPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~~g~-----~i-~-------G--ip~y~sl~el~~~~~iDlavi~ 94 (306)
++|+|+|+ |.+|......+...|. + +..+|.+...- ++ . . +..+.+.+++. +.|++|++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~---~aD~Vi~a 77 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTA---NSDVIVVT 77 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGT---TCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHC---CCCEEEEc
Confidence 58999999 9999887777777775 7 55777553100 00 0 1 12224564443 38999998
Q ss_pred cCch----------------hHHHHHHHHHHcCCCEEEEecCC
Q psy8894 95 VPPP----------------GAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 95 vp~~----------------~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
++.. ...++.+++.+.+.+.++++.+.
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN 120 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence 6432 22345566666677766655543
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=83.94 E-value=2.1 Score=39.85 Aligned_cols=87 Identities=15% Similarity=0.154 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCC-------------CCc------------eecC--eecc--CCH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGK-------------GGK------------THLD--LPVF--NTV 79 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~-------------~g~------------~i~G--ip~y--~sl 79 (306)
+.+|+|-|+ |+.|+.+.+.+.+. ++++++.-|... .|. .+.| +++| .+.
T Consensus 4 ~~kv~INGf-GrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp 82 (338)
T 3lvf_P 4 AVKVAINGF-GRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDA 82 (338)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred cEEEEEECC-CcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHHhccCCCCCCcCCeEEEcCCEEEECCEEEEEEEeccc
Confidence 358999999 99999999877765 677775433210 010 1234 4555 356
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++- +.++|+++.++......+-+...++.|.|.+++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (338)
T 3lvf_P 83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLI 121 (338)
T ss_dssp GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEE
T ss_pred ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEE
Confidence 77663 236999999999999999999999999998886
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=2.7 Score=38.25 Aligned_cols=89 Identities=10% Similarity=0.002 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC-------eEEEeeCCCC-----CCc--ee--------cCeeccCCHHhhhhc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT-------KVVGGVSPGK-----GGK--TH--------LDLPVFNTVKEARDA 85 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~-------~vv~~VnP~~-----~g~--~i--------~Gip~y~sl~el~~~ 85 (306)
.++++|+|+|++|..|+.....|.+.|+ +++ .+|... .+. ++ .++....++.+..+
T Consensus 2 ~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~-l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~- 79 (327)
T 1y7t_A 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQ-LLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK- 79 (327)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT-
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEE-EEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC-
Confidence 3567899999999999988888887776 554 565431 010 11 12222344555544
Q ss_pred CCCcEEEEecCc----------------hhHHHHHHHHHHcC-CC-EEEEec
Q psy8894 86 TGAEATVIYVPP----------------PGAAKAIHEALDAE-MP-LIVCIT 119 (306)
Q Consensus 86 ~~iDlavi~vp~----------------~~~~~~~~e~~~~G-i~-~vvi~t 119 (306)
++|+++.+... ..+..+++.+.+.+ .+ .++++|
T Consensus 80 -~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~s 130 (327)
T 1y7t_A 80 -DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (327)
T ss_dssp -TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred -CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 49999986321 12344667777776 65 444444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=83.52 E-value=1.6 Score=42.12 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
-++..+|+|||. |..|-...-.|.+.|+++++.
T Consensus 18 ~~~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~ 50 (444)
T 3vtf_A 18 GSHMASLSVLGL-GYVGVVHAVGFALLGHRVVGY 50 (444)
T ss_dssp TCCCCEEEEECC-SHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEE
Confidence 345678999998 777755566777789998843
|
| >3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis} | Back alignment and structure |
|---|
Probab=83.37 E-value=12 Score=34.93 Aligned_cols=31 Identities=19% Similarity=0.080 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
.+.++++|+|. ++....+.+..++.|++++.
T Consensus 3 ~~~k~l~Il~~-~~~~~~i~~aa~~lG~~vv~ 33 (425)
T 3vot_A 3 KRNKNLAIICQ-NKHLPFIFEEAERLGLKVTF 33 (425)
T ss_dssp CCCCEEEEECC-CTTCCHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECC-ChhHHHHHHHHHHCCCEEEE
Confidence 46789999998 67777889999999999763
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=83.36 E-value=0.67 Score=45.01 Aligned_cols=91 Identities=16% Similarity=0.106 Sum_probs=58.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-eCCCCCC-ceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-VSPGKGG-KTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-VnP~~~g-~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
-.-++++|+|+ |+.|+...+.++.+|.+++.. ++|...- ....|+.+ .+++++... .|+++.+++...... -+
T Consensus 245 L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~--ADIVv~atgt~~lI~-~e 319 (464)
T 3n58_A 245 MAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAAST--ADIVVTTTGNKDVIT-ID 319 (464)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGG--CSEEEECCSSSSSBC-HH
T ss_pred ccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhh--CCEEEECCCCccccC-HH
Confidence 34589999999 999999999999999997632 4553200 01245554 468888876 999998775433211 13
Q ss_pred HHHHcCCCEEEEecCCCC
Q psy8894 106 EALDAEMPLIVCITEGIP 123 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~ 123 (306)
......-.++++-+..+.
T Consensus 320 ~l~~MK~GAILINvGRgd 337 (464)
T 3n58_A 320 HMRKMKDMCIVGNIGHFD 337 (464)
T ss_dssp HHHHSCTTEEEEECSSST
T ss_pred HHhcCCCCeEEEEcCCCC
Confidence 333455566665455443
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=83.31 E-value=0.93 Score=43.72 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
-++|+|+|+ |+.|+...+.++.+|++++ ..+|..... ...|.. +.+++++... .|+++++........ -+.
T Consensus 211 GktVgIiG~-G~IG~~vA~~Lka~Ga~Vi-v~D~~p~~a~~A~~~G~~-~~sL~eal~~--ADVVilt~gt~~iI~-~e~ 284 (436)
T 3h9u_A 211 GKTACVCGY-GDVGKGCAAALRGFGARVV-VTEVDPINALQAAMEGYQ-VLLVEDVVEE--AHIFVTTTGNDDIIT-SEH 284 (436)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCE-ECCHHHHTTT--CSEEEECSSCSCSBC-TTT
T ss_pred CCEEEEEee-CHHHHHHHHHHHHCCCEEE-EECCChhhhHHHHHhCCe-ecCHHHHHhh--CCEEEECCCCcCccC-HHH
Confidence 578999999 9999999999999999976 566642101 123544 3479999876 999998765443322 112
Q ss_pred HHHcCCCEEEE
Q psy8894 107 ALDAEMPLIVC 117 (306)
Q Consensus 107 ~~~~Gi~~vvi 117 (306)
.....-..+++
T Consensus 285 l~~MK~gAIVI 295 (436)
T 3h9u_A 285 FPRMRDDAIVC 295 (436)
T ss_dssp GGGCCTTEEEE
T ss_pred HhhcCCCcEEE
Confidence 22334455554
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=83.27 E-value=1.3 Score=40.73 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEeeCCCCCCcee-------cCee--ccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGVSPGKGGKTH-------LDLP--VFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~VnP~~~g~~i-------~Gip--~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
..++++|+|+ |.+|+...+.+.+ .+.+.|...|+. ..++. .|++ .+ +++++... .|+++.+||..
T Consensus 120 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~-~~~eav~~--aDIVi~aT~s~ 194 (313)
T 3hdj_A 120 RSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA-APADIAAQ--ADIVVTATRST 194 (313)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC-CHHHHHHH--CSEEEECCCCS
T ss_pred CCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe-CHHHHHhh--CCEEEEccCCC
Confidence 4689999999 9999999888877 467656678887 22221 2543 44 88888776 99999999875
Q ss_pred hHHHHH-HHHHHcCCC
Q psy8894 99 GAAKAI-HEALDAEMP 113 (306)
Q Consensus 99 ~~~~~~-~e~~~~Gi~ 113 (306)
. .++ .+.++.|..
T Consensus 195 ~--pvl~~~~l~~G~~ 208 (313)
T 3hdj_A 195 T--PLFAGQALRAGAF 208 (313)
T ss_dssp S--CSSCGGGCCTTCE
T ss_pred C--cccCHHHcCCCcE
Confidence 3 233 233455544
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=82.92 E-value=3.1 Score=41.61 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=55.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCcee---cCeecc-CC-------HHhhhhcCCCcEEEEecC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTH---LDLPVF-NT-------VKEARDATGAEATVIYVP 96 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i---~Gip~y-~s-------l~el~~~~~iDlavi~vp 96 (306)
+.++|.|.|++|-.|+...+.|.+. |+++++........... .++..+ -+ ++++.+. +|+++-+..
T Consensus 314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~--~D~Vih~Aa 391 (660)
T 1z7e_A 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKK--CDVVLPLVA 391 (660)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHH--CSEEEECCC
T ss_pred cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcC--CCEEEECce
Confidence 4578999999999999999999987 88877554322100111 122222 12 3333333 899987532
Q ss_pred c------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 P------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
. ..+..+++.|.+.| +.++.+++
T Consensus 392 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS 432 (660)
T 1z7e_A 392 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPST 432 (660)
T ss_dssp CCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECC
T ss_pred ecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEec
Confidence 1 12445678888888 77776665
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=82.77 E-value=1.8 Score=37.99 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
.+++.|.|+++-.|+...+.|.+.|++++..
T Consensus 5 ~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 35 (281)
T 3m1a_A 5 AKVWLVTGASSGFGRAIAEAAVAAGDTVIGT 35 (281)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999997643
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.73 E-value=1.9 Score=40.34 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------C----------c--eecC--eecc--CCH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------G----------K--THLD--LPVF--NTV 79 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g----------~--~i~G--ip~y--~sl 79 (306)
..+|+|-|+ |+.|+.+.+.+.+. ++++++.-||... | + .+.| +++| .+.
T Consensus 4 ~~kv~INGf-GrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~llkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp 82 (345)
T 4dib_A 4 MTRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRDP 82 (345)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSCG
T ss_pred cEEEEEECC-CcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHHhcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCCh
Confidence 468999999 99999999877765 6888866555210 0 0 1234 4455 356
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++++- +.++|+++-++......+-+...++.|.|.+++
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViI 121 (345)
T 4dib_A 83 KELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVIL 121 (345)
T ss_dssp GGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEE
Confidence 67653 236999999999988999999999999998886
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=82.52 E-value=3.1 Score=38.87 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=60.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc---e---------ecC--eeccC--C
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK---T---------HLD--LPVFN--T 78 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~---~---------i~G--ip~y~--s 78 (306)
..+|+|-|. |+.|+...+.+.+. .+++++.-+|-.. |. + +.| ++++. +
T Consensus 11 ~~kv~INGf-GrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~~d 89 (345)
T 2b4r_O 11 ATKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD 89 (345)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS
T ss_pred heEEEEeCC-chHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHhccCCCCCcCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence 468999998 99999999887765 7888865553210 10 1 122 33443 4
Q ss_pred HHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 79 VKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 79 l~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
.++++- +.++|+++.+++.....+.+...++.|.|.+++
T Consensus 90 p~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVI 129 (345)
T 2b4r_O 90 PSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM 129 (345)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred cccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEE
Confidence 455542 125999999999888888899999999998775
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=82.49 E-value=1.5 Score=38.59 Aligned_cols=82 Identities=20% Similarity=0.196 Sum_probs=51.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE-EEEecCchhHHHHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA-TVIYVPPPGAAKAIHE 106 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl-avi~vp~~~~~~~~~e 106 (306)
.+.+++.|.|+++-+|+...+.|.+.|++++ .++.+. +.. .+++.+. ++.. ..+.+-++.+.+++++
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~-~~~r~~--~~~--------~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~ 92 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGHRVI-ISYRTE--HAS--------VTELRQA-GAVALYGDFSCETGIMAFIDL 92 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTCCEE-EEESSC--CHH--------HHHHHHH-TCEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEeCCh--HHH--------HHHHHhc-CCeEEECCCCCHHHHHHHHHH
Confidence 3457899999999999999999999999976 444432 111 1222221 1222 2244566777777887
Q ss_pred HHHc--CCCEEEEecCCC
Q psy8894 107 ALDA--EMPLIVCITEGI 122 (306)
Q Consensus 107 ~~~~--Gi~~vvi~t~Gf 122 (306)
+.+. ++..+++ ..|.
T Consensus 93 ~~~~~g~iD~lv~-nAg~ 109 (260)
T 3gem_A 93 LKTQTSSLRAVVH-NASE 109 (260)
T ss_dssp HHHHCSCCSEEEE-CCCC
T ss_pred HHHhcCCCCEEEE-CCCc
Confidence 7764 5887665 5554
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=82.39 E-value=4.6 Score=39.01 Aligned_cols=117 Identities=12% Similarity=0.139 Sum_probs=67.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCC-Cc-eec-----------CeeccC--------CHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKG-GK-THL-----------DLPVFN--------TVK 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~-g~-~i~-----------Gip~y~--------sl~ 80 (306)
+.++|+|.|. |++|....+.|.+.|.++|+. +||+.. -. ++. .+.-|+ +-+
T Consensus 229 ~g~~v~VqG~-GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i~~~ 307 (449)
T 1bgv_A 229 VGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGE 307 (449)
T ss_dssp TTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEeCch
Confidence 4589999998 999999999999999998875 455421 00 000 011110 011
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhc-CCeEEcc----CCCceec
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQS-KSRLIGP----NCPGIIA 152 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~-gi~iiGP----Nc~Gi~~ 152 (306)
++.. .++|+.+=| ++..-..+.++++.+.|+|.|+=.+-+....+..+ +-+++ |+.++ | |+-|++.
T Consensus 308 e~~~-~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~~----~l~~~~Gi~~~-PD~~aNaGGV~~ 379 (449)
T 1bgv_A 308 KPWG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALR----FLMQQPNMVVA-PSKAVNAGGVLV 379 (449)
T ss_dssp CGGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHH----HHHHCTTCEEE-CHHHHTTHHHHH
T ss_pred hhhc-CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHHH----HHHHcCCEEEE-ChHHhcCCCcee
Confidence 1221 247888765 34455677888888889996553333333222222 33566 87655 4 4445544
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=82.29 E-value=3.1 Score=35.87 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
.+++.|.|+++..|+...+.|.+.|++++.
T Consensus 15 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 44 (247)
T 1uzm_A 15 SRSVLVTGGNRGIGLAIAQRLAADGHKVAV 44 (247)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 478999999999999999999999999763
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=81.91 E-value=4.3 Score=39.31 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=49.9
Q ss_pred cCCCcEEEEEcCCCCCChH-HHHHHHHcCCeEEEeeCCCCCC--c--eecCeeccC--CHHhhhhcCCCcEEEEe--cCc
Q psy8894 27 LTSKSKVICQGFTGKQGTF-HSKQAIEYGTKVVGGVSPGKGG--K--THLDLPVFN--TVKEARDATGAEATVIY--VPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~-~~~~l~~~g~~vv~~VnP~~~g--~--~i~Gip~y~--sl~el~~~~~iDlavi~--vp~ 97 (306)
..+.++|.|+|. |..|.. ..+.|.+.|+++. +.|.+... + +-.|++++. +.+.+. ++|++|+. +|+
T Consensus 19 ~~~~~~v~viGi-G~sG~s~~A~~l~~~G~~V~-~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~---~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 19 MRRVRHIHFVGI-GGAGMGGIAEVLANEGYQIS-GSDLAPNSVTQHLTALGAQIYFHHRPENVL---DASVVVVSTAISA 93 (494)
T ss_dssp ---CCEEEEETT-TSTTHHHHHHHHHHTTCEEE-EECSSCCHHHHHHHHTTCEEESSCCGGGGT---TCSEEEECTTSCT
T ss_pred hccCCEEEEEEE-cHhhHHHHHHHHHhCCCeEE-EEECCCCHHHHHHHHCCCEEECCCCHHHcC---CCCEEEECCCCCC
Confidence 455689999999 989985 5888999999986 66654310 0 124777764 233332 38998875 444
Q ss_pred hhHHHHHHHHHHcCCC
Q psy8894 98 PGAAKAIHEALDAEMP 113 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~ 113 (306)
+ -+.+.++.++|++
T Consensus 94 ~--~p~~~~a~~~gi~ 107 (494)
T 4hv4_A 94 D--NPEIVAAREARIP 107 (494)
T ss_dssp T--CHHHHHHHHTTCC
T ss_pred C--CHHHHHHHHCCCC
Confidence 2 2345556666655
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=81.89 E-value=1.7 Score=41.88 Aligned_cols=70 Identities=14% Similarity=0.062 Sum_probs=48.9
Q ss_pred CcEEEEEcCCCCCChH---------HHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 30 KSKVICQGFTGKQGTF---------HSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~---------~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+++|+|.|.+=|++.- +.+.|++.|.++. ..||.....+..|.++..+++++.+. .|++|+....+..
T Consensus 332 ~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~-~~DP~~~~~~~~~~~~~~~~~~~~~~--aD~iv~~~~~~~~ 408 (432)
T 3pid_A 332 PKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVI-IYEPVMQEDEFFNSRVVRDLNAFKQE--ADVIISNRMAEEL 408 (432)
T ss_dssp CSSEEEECC-----------CHHHHHHHHHHHTTCCEE-EECTTCCSSEETTEEECCCHHHHHHH--CSEEECSSCCGGG
T ss_pred CCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEE-EECCCCChhhcCCceEECCHHHHHhc--CCEEEECCCChHH
Confidence 6789999998777642 3567888899875 78887644567788888899998876 8999887765544
Q ss_pred HH
Q psy8894 101 AK 102 (306)
Q Consensus 101 ~~ 102 (306)
.+
T Consensus 409 ~~ 410 (432)
T 3pid_A 409 AD 410 (432)
T ss_dssp GG
T ss_pred HH
Confidence 33
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=81.80 E-value=2.4 Score=38.03 Aligned_cols=105 Identities=11% Similarity=0.020 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCeeccCCHHhhhhcCCCcEEEEecCchhHHH--
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDLPVFNTVKEARDATGAEATVIYVPPPGAAK-- 102 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-- 102 (306)
..+++.|+|+ |.+++.+...|.+.|.+-+..+|..... +++ .+.+...++. + . +.|++|-+||......
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~-~-~--~~DivInaTp~gm~~~~~ 192 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE-N-Q--QADILVNVTSIGMKGGKE 192 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT-T-C--CCSEEEECSSTTCTTSTT
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh-c-c--cCCEEEECCCCCccCccc
Confidence 4578999999 9999999999999998644588886411 111 1322222222 2 2 4899999999765321
Q ss_pred -----HHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 103 -----AIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 103 -----~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+-.+++..+. .++-+.....++ .++ +.|++.|.+++
T Consensus 193 ~~~~~~~~~~l~~~~-~v~DlvY~P~~T---~ll-~~A~~~G~~~i 233 (271)
T 1npy_A 193 EMDLAFPKAFIDNAS-VAFDVVAMPVET---PFI-RYAQARGKQTI 233 (271)
T ss_dssp TTSCSSCHHHHHHCS-EEEECCCSSSSC---HHH-HHHHHTTCEEE
T ss_pred cCCCCCCHHHcCCCC-EEEEeecCCCCC---HHH-HHHHHCCCEEE
Confidence 2234554442 222233322222 233 35789998776
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=81.59 E-value=0.82 Score=41.49 Aligned_cols=69 Identities=6% Similarity=-0.051 Sum_probs=45.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-cee---cCe---ecc--CCHHhhhhcCCCcEEEEecCchh
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KTH---LDL---PVF--NTVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~i---~Gi---p~y--~sl~el~~~~~iDlavi~vp~~~ 99 (306)
+.+++.|+|+ |.+|+.....|.+.|++-+..+|.+... +++ .+. .+. .++.+.... .|++|-++|...
T Consensus 140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~--aDivIn~t~~~~ 216 (297)
T 2egg_A 140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAE--YDIIINTTSVGM 216 (297)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGG--CSEEEECSCTTC
T ss_pred CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhcc--CCEEEECCCCCC
Confidence 4578999999 8899999999999998433477876311 111 111 222 234444444 899999998765
Q ss_pred H
Q psy8894 100 A 100 (306)
Q Consensus 100 ~ 100 (306)
.
T Consensus 217 ~ 217 (297)
T 2egg_A 217 H 217 (297)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=81.23 E-value=4.8 Score=35.12 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVG 59 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~ 59 (306)
.+++.|.|+++..|+...+.|.+.|++++.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~ 37 (264)
T 2dtx_A 8 DKVVIVTGASMGIGRAIAERFVDEGSKVID 37 (264)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 578999999999999999999999999763
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=81.05 E-value=4.3 Score=35.06 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
.+++.|.|+++-.|+...+.|.+.|++++ .++.+
T Consensus 4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~-~~~r~ 37 (255)
T 2q2v_A 4 GKTALVTGSTSGIGLGIAQVLARAGANIV-LNGFG 37 (255)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEE-EECSS
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46899999999999999999999999976 44443
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=80.55 E-value=5.1 Score=37.23 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=62.5
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-----------cCeeccCCHHhhhhcCCCcEEEEecCc-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-----------LDLPVFNTVKEARDATGAEATVIYVPP- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-----------~Gip~y~sl~el~~~~~iDlavi~vp~- 97 (306)
..+|+|+|+ |-.|..+.++|...|..-+..||+......- .|.+--..+.+...+..|++-+...+.
T Consensus 34 ~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~ 112 (340)
T 3rui_A 34 NTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLS 112 (340)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 578999999 8899999999999999866688876421111 121111112222222235555544331
Q ss_pred --------------hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 98 --------------PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 98 --------------~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
....+.+++.++ +...|+..+..+. . ..+..++|+++++.++.
T Consensus 113 i~~~g~~~~~~~~~~~~~~~l~~~l~-~~DlVvd~tDn~~-t--R~lin~~c~~~~~plI~ 169 (340)
T 3rui_A 113 IPMIGHKLVNEEAQHKDFDRLRALIK-EHDIIFLLVDSRE-S--RWLPSLLSNIENKTVIN 169 (340)
T ss_dssp CCCTTSCCSCHHHHHHHHHHHHHHHH-HCSEEEECCSSTG-G--GHHHHHHHHHTTCEEEE
T ss_pred ccccCcccchhhhhcCCHHHHHhhhc-cCCEEEecCCCHH-H--HHHHHHHHHHcCCcEEE
Confidence 112333444443 4677666555543 2 23344678999987775
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=80.54 E-value=1 Score=39.98 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=52.2
Q ss_pred CccccccccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE
Q psy8894 11 SKVAEEIYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA 90 (306)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl 90 (306)
+..+.+.|+...++ + +.+++.|.|+++-.|+...+.|.+.|++++ .++.+.. +... .. .+++.......+
T Consensus 9 ~~~~~~~~n~~~~~--l-~~k~~lVTGas~GIG~~ia~~la~~G~~V~-~~~r~~~-~~~~--~~---~~~~~~~~~~~~ 78 (281)
T 3v2h_A 9 SGVDLGTENLYFQS--M-MTKTAVITGSTSGIGLAIARTLAKAGANIV-LNGFGAP-DEIR--TV---TDEVAGLSSGTV 78 (281)
T ss_dssp -------------C--C-TTCEEEEETCSSHHHHHHHHHHHHTTCEEE-EECCCCH-HHHH--HH---HHHHHTTCSSCE
T ss_pred ccccccccchhhhc--c-CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEeCCCh-HHHH--HH---HHHHhhccCCcE
Confidence 34455555555433 2 247899999999999999999999999976 4544210 1100 01 122221101222
Q ss_pred EE---EecCchhHHHHHHHHHHc--CCCEEEEecCCC
Q psy8894 91 TV---IYVPPPGAAKAIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 91 av---i~vp~~~~~~~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
.. +.+-++.+.++++++.+. ++..+++ ..|.
T Consensus 79 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~-nAg~ 114 (281)
T 3v2h_A 79 LHHPADMTKPSEIADMMAMVADRFGGADILVN-NAGV 114 (281)
T ss_dssp EEECCCTTCHHHHHHHHHHHHHHTSSCSEEEE-CCCC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHCCCCCEEEE-CCCC
Confidence 22 345566777777777764 6887665 5554
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.21 E-value=0.52 Score=45.57 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
.++++|.|.|++|-.|+...+.|.+.|+++++.+
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~ 181 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFI 181 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEE
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEE
Confidence 4568999999999999999999977788887554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=80.10 E-value=1.1 Score=41.97 Aligned_cols=85 Identities=13% Similarity=0.070 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe--eCCCCCCceecC--eeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG--VSPGKGGKTHLD--LPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~--VnP~~~g~~i~G--ip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
..-++|++.|| +..|....+.+.-..-.+.+. .||...|..+.| +|+++ -+++.+ ..||.+++. ++....++
T Consensus 317 ~~gk~v~~yGa-~~~g~~l~~~~~~~~~~i~~~~D~~~~k~g~~~~g~~ipi~~-p~~~~~-~~~d~vl~~-~~~~~~ei 392 (416)
T 4e2x_A 317 AEGRSVVGYGA-TAKSATVTNFCGIGPDLVHSVYDTTPDKQNRLTPGAHIPVRP-ASAFSD-PYPDYALLF-AWNHAEEI 392 (416)
T ss_dssp HTTCCEEEECC-CSHHHHHHHHHTCCTTTSCCEEESCGGGTTEECTTTCCEEEE-GGGCCS-SCCSEEEES-CGGGHHHH
T ss_pred HcCCeEEEEcc-ccHHHHHHHhcCCCcceeeEEEeCCccccCccCCCCCCcCCC-HHHHhh-cCCCEEEEe-cchhHHHH
Confidence 34678999999 544544444332111114344 577766778888 99998 556654 369998776 45556666
Q ss_pred HHHH---HHcCCCEEE
Q psy8894 104 IHEA---LDAEMPLIV 116 (306)
Q Consensus 104 ~~e~---~~~Gi~~vv 116 (306)
+++. .+.|-|-|+
T Consensus 393 ~~~~~~~~~~g~~~~~ 408 (416)
T 4e2x_A 393 MAKEQEFHQAGGRWIL 408 (416)
T ss_dssp HHHCHHHHHTTCEEEE
T ss_pred HHHHHHHHhcCCEEEE
Confidence 6544 467777543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 306 | ||||
| d1euca1 | 130 | c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-c | 3e-57 | |
| d2nu7a1 | 119 | c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-c | 5e-49 | |
| d1oi7a1 | 121 | c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-c | 2e-48 | |
| d1euca2 | 176 | c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alph | 6e-41 | |
| d2nu7a2 | 166 | c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alph | 1e-36 | |
| d1oi7a2 | 167 | c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alph | 2e-35 | |
| d2csua2 | 161 | c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chai | 2e-24 |
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 178 bits (454), Expect = 3e-57
Identities = 95/128 (74%), Positives = 113/128 (88%)
Query: 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFN 77
Y A+R +L + +KVICQGFTGKQGTFHS+QA+EYGT +VGG +PGKGGKTHL LPVFN
Sbjct: 3 YTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFN 62
Query: 78 TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQ 137
TVKEA++ TGA A+VIYVPPP AA AI+EA+DAE+PL+VCITEGIPQ DMV+VKHRL+RQ
Sbjct: 63 TVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQ 122
Query: 138 SKSRLIGP 145
K+RLIGP
Sbjct: 123 GKTRLIGP 130
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Score = 157 bits (398), Expect = 5e-49
Identities = 76/118 (64%), Positives = 92/118 (77%), Gaps = 1/118 (0%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ +KVICQGFTG QGTFHS+QAI YGTK+VGGV+PGKGG THL LPVFNTV+EA AT
Sbjct: 3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAAT 62
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
GA A+VIYVP P +I EA+DA + LI+ ITEGIP LDM+ VK +L ++ R+IG
Sbjct: 63 GATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKL-DEAGVRMIG 119
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Score = 155 bits (394), Expect = 2e-48
Identities = 60/118 (50%), Positives = 82/118 (69%), Gaps = 1/118 (0%)
Query: 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDAT 86
+ +++V+ QG TG++G FH+KQ + YGTK+V GV+PGKGG L +PV++TVKEA
Sbjct: 4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHH 63
Query: 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144
+A++I+VP P AA A EA A +PLIV ITEGIP LDMV+ + + SRLIG
Sbjct: 64 EVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEI-KALGSRLIG 120
|
| >d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 138 bits (348), Expect = 6e-41
Identities = 121/175 (69%), Positives = 144/175 (82%), Gaps = 15/175 (8%)
Query: 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP 205
NCPG+I P +CKIGIMPGHIH++G +G+VSRSGTLTYEAVHQTTQVGLGQ+LCVGIGGDP
Sbjct: 1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDP 60
Query: 206 FNGTNFIDCLEVFLKDPETKGIILIGEIGG---------------GPNAKPVVSFIAGIT 250
FNGT+F DCLE+FL DP T+GIILIGEIGG GP +KPVVSFIAG+T
Sbjct: 61 FNGTDFTDCLEIFLNDPATEGIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLT 120
Query: 251 APPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMKRLNL 305
APPGRRMGHAGAII+GGKGGA++KI AL+ AGV+V+ SPAQ+G + KE ++ +
Sbjct: 121 APPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVSMSPAQLGTTIYKEFEKRKM 175
|
| >d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 126 bits (318), Expect = 1e-36
Identities = 102/165 (61%), Positives = 119/165 (72%), Gaps = 12/165 (7%)
Query: 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP 205
N PG+I P +CKIGI PGHIH+ G VG+VSRSGTLTYEAV QTT G GQ+ CVGIGGDP
Sbjct: 1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDP 60
Query: 206 FNGTNFIDCLEVFLKDPETKGIILIGEIGGGPNA-----------KPVVSFIAGITAPPG 254
G+NFID LE+F KDP+T+ I++IGEIGG KPVV +IAG+TAP G
Sbjct: 61 IPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKG 120
Query: 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299
+RMGHAGAII+GGKG A +K ALE AGV RS A +G E LK
Sbjct: 121 KRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIG-EALKT 164
|
| >d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 123 bits (310), Expect = 2e-35
Identities = 87/165 (52%), Positives = 110/165 (66%), Gaps = 12/165 (7%)
Query: 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDP 205
NCPGII+ E+ KIGIMPGH+ +RG VG++SRSGTLTYEA +Q GLG T VGIGGDP
Sbjct: 1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDP 60
Query: 206 FNGTNFIDCLEVFLKDPETKGIILIGEIGGGP-----------NAKPVVSFIAGITAPPG 254
GT F D L +F +DPET+ ++LIGEIGG KPVV FI G +AP G
Sbjct: 61 VIGTTFKDLLPLFNEDPETEAVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKG 120
Query: 255 RRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKE 299
+RMGHAGAII G G + K+ A +AG+ V + ++ EL+K+
Sbjct: 121 KRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIV-ELVKK 164
|
| >d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 94.7 bits (235), Expect = 2e-24
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 25/157 (15%)
Query: 158 IGIMPGHIH---------QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNG 208
+GIM H+ ++G V +S+SG L V++T + +G + + +G
Sbjct: 1 VGIMNTHVDLNATFITVAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMAD-- 58
Query: 209 TNFIDCLEVFLKDPETKGIILIGEIGGGP-----------NAKPVVSFIAGITAPPGRRM 257
+F + +E E K I L E KP+++ AG + R
Sbjct: 59 VDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKSESGARAA 118
Query: 258 GHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGN 294
++ G + A +++GV+V + +M +
Sbjct: 119 SSHTGSLA---GSWKIYEAAFKQSGVLVANTIDEMLS 152
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 306 | |||
| d1euca2 | 176 | Succinyl-CoA synthetase, alpha-chain, C-terminal d | 100.0 | |
| d1oi7a2 | 167 | Succinyl-CoA synthetase, alpha-chain, C-terminal d | 100.0 | |
| d2nu7a2 | 166 | Succinyl-CoA synthetase, alpha-chain, C-terminal d | 100.0 | |
| d2csua2 | 161 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 100.0 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 99.95 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 99.93 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 99.92 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 99.92 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 99.91 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 99.86 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 99.86 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 99.4 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 99.35 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 99.2 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 99.07 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.95 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.69 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.65 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 98.61 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.6 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.51 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 98.39 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.33 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 98.32 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 97.94 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.87 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.83 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 97.79 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.71 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 97.68 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 97.67 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.59 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.38 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.35 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.32 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.31 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 97.26 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.23 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.18 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 97.12 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.11 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.09 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 97.06 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.04 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.01 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.0 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.99 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.88 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.87 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 96.86 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.77 | |
| d1eucb1 | 148 | Succinyl-CoA synthetase, beta-chain, C-terminal do | 96.62 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.54 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.54 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.49 | |
| d2nu7b1 | 150 | Succinyl-CoA synthetase, beta-chain, C-terminal do | 96.47 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.36 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.11 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 96.0 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 95.86 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 95.84 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.83 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 95.58 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 95.46 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.33 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.22 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 95.18 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 95.13 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 95.1 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 94.92 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.7 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.64 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.54 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 94.48 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.46 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.34 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 94.33 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.23 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.23 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.14 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.1 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 93.99 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.96 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.57 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 93.52 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.48 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 93.28 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 93.17 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 93.12 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 93.03 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 92.98 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.97 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.96 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.66 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 92.53 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.46 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 92.33 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 92.0 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 91.98 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 91.59 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 91.52 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 91.31 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 91.28 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 91.27 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 91.23 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 91.22 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 90.94 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 89.82 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 89.77 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 89.29 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 89.19 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 89.12 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 88.66 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 88.57 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 88.51 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 88.5 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 88.36 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 87.98 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 87.84 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 87.83 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 87.74 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 87.68 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 87.47 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 87.43 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 87.13 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 86.92 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 86.14 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.04 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 85.66 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 85.27 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.44 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 83.6 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 83.47 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 82.8 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.29 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 82.21 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 81.71 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 80.91 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 80.63 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 80.54 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 80.06 |
| >d1euca2 c.23.4.1 (A:131-306) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=100.00 E-value=1.1e-39 Score=280.87 Aligned_cols=156 Identities=71% Similarity=1.261 Sum_probs=140.1
Q ss_pred CCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q psy8894 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225 (306)
Q Consensus 146 Nc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~ 225 (306)
||+|+++|....+++++...+.||+||+|||||+++.++++++.++|+|++.++++||+..+|+++.|+|+||.+||+|+
T Consensus 1 NC~Gii~p~~~~~~~~~~~~~~~G~iaivSQSG~l~~~l~~~~~~~g~g~~~~~~~g~~~~~~~~~~d~l~~~~~d~~t~ 80 (176)
T d1euca2 1 NCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATE 80 (176)
T ss_dssp SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSCSSCSCCHHHHHHHHHHCTTCC
T ss_pred CCCeEEccccceeeEcCCcCCCCCCEEEEeCCcHHHHHHHHHHHhcCCceEEEEecccchhhhhHHHHHHHHHHhhccCc
Confidence 99999999876677777777899999999999999999999999999999999988888779999999999999999999
Q ss_pred EEEEEEeeCC---------------CCCCCcEEEEEecCCCCCCCCc----cCCcccccCCCCCHHHHHHHHHHcCCeEe
Q psy8894 226 GIILIGEIGG---------------GPNAKPVVSFIAGITAPPGRRM----GHAGAIISGGKGGAQDKIDALEKAGVIVT 286 (306)
Q Consensus 226 ~I~ly~E~~~---------------~~~~KPVvvlk~Grs~~~g~~~----sHtga~a~~~~g~~~~~~a~~~~aGvi~~ 286 (306)
+|++|+|+++ .+++||||++|+||+...++++ +|||+++ |++.+|+++|+|+|++++
T Consensus 81 ~i~~~~E~~~~~~~~~~~~~~a~~~~~~~kPvv~~k~grs~~~~~~~~~a~s~tgs~a----gs~~~~~aafrqaGvi~v 156 (176)
T d1euca2 81 GIILIGEIGGNAEENAAEFLKQHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGK----GGAKEKITALQSAGVVVS 156 (176)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHSSSSSCCCEEEEEECTTCCTTSCCSSTTCCCBTTB----SCHHHHHHHHHHTTCEEC
T ss_pred ccceEEEeeccchhhhHHHHHHHHhccCCCceEEEeccccccccccccccchhccCCC----CCHHHHHHHHHHCCCeEc
Confidence 9999999996 3578999999999996533434 5566666 899999999999999999
Q ss_pred CCHhHHHHHHHHHHHhhcC
Q psy8894 287 RSPAQMGNELLKEMKRLNL 305 (306)
Q Consensus 287 ~~~~el~~~~~~~~~~~~~ 305 (306)
+|++||.++++.+|+.+.|
T Consensus 157 ~s~~El~~~l~~~~~~~~~ 175 (176)
T d1euca2 157 MSPAQLGTTIYKEFEKRKM 175 (176)
T ss_dssp SSGGGHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCC
Confidence 9999999999999998765
|
| >d1oi7a2 c.23.4.1 (A:122-288) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.3e-40 Score=281.08 Aligned_cols=155 Identities=55% Similarity=0.928 Sum_probs=127.3
Q ss_pred CCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q psy8894 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225 (306)
Q Consensus 146 Nc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~ 225 (306)
||+|+++|...+.+++|...++||+||+|||||+++.+++++++++|+|+|+++++||+++.|+++.|+++||.+||+|+
T Consensus 1 NC~Gii~p~~~~~g~~p~~~~~~G~va~iSQSG~~~~~~~~~~~~~g~g~s~~~~~G~~~~~~~~~~d~l~~~~~D~~t~ 80 (167)
T d1oi7a2 1 NCPGIISAEETKIGIMPGHVFKRGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETE 80 (167)
T ss_dssp SSCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCC
T ss_pred CCCcEEccCcceEeecccccCCCCcEEEEEeccHHHHHHHHHHHHcCCCceeEEEecceeecCchHHHHHHHHhhccccc
Confidence 99999999766677777777889999999999999999999999999999999999999778899999999999999999
Q ss_pred EEEEEEeeCC-----------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q psy8894 226 GIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGN 294 (306)
Q Consensus 226 ~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~ 294 (306)
+|++|+|+++ ...+||+|++|.|++++.+++++||++++++..|++++|+++|||+||++++|++||+|
T Consensus 81 vI~l~~E~~~~~~~f~~~~~~~~~~kpvvv~~~g~~a~~~~~~~~a~a~~~s~~g~~~~~~aaf~qaGv~~v~~~~El~d 160 (167)
T d1oi7a2 81 AVVLIGEIGGSDEEEAAAWVKDHMKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVADTIDEIVE 160 (167)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBCSSHHHHHH
T ss_pred eeeEeeeccchHHHHHHHHHHHhcCCceEEEeccccccccccccccchhhcCCCCCHHHHHHHHHHCCCEEcCCHHHHHH
Confidence 9999999997 36789999999998876566788888888777799999999999999999999999999
Q ss_pred HHHHHH
Q psy8894 295 ELLKEM 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
+++..|
T Consensus 161 ~lk~~l 166 (167)
T d1oi7a2 161 LVKKAL 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998654
|
| >d2nu7a2 c.23.4.1 (A:122-287) Succinyl-CoA synthetase, alpha-chain, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, alpha-chain, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-39 Score=275.52 Aligned_cols=153 Identities=59% Similarity=0.976 Sum_probs=140.9
Q ss_pred CCCceecCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q psy8894 146 NCPGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225 (306)
Q Consensus 146 Nc~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~ 225 (306)
||+|+++|....++++|...++||+||||||||+++.+++++++++++|+|+++|+||+++.|+++.|+++|+.+||.|+
T Consensus 1 N~~GiI~P~~~~~g~~~~~~~~~G~iaiiSQSG~~~~~l~~~~~~~~~g~s~~vs~Gn~~~~~~~~~~~~~~~~dd~~t~ 80 (166)
T d2nu7a2 1 NSPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTE 80 (166)
T ss_dssp SCCEEEETTTEEEESSCGGGCCEEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCC
T ss_pred CCCcEEcCCccceeeccccCCCCCCEEEEECCchHHHHHHHHhhhhhcCcceeeccCCCcccchHHHHHHHhhccCCccE
Confidence 99999999877788888878999999999999999999999999999999999999999778888999999999999999
Q ss_pred EEEEEEeeCC-----------CCCCCcEEEEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHH
Q psy8894 226 GIILIGEIGG-----------GPNAKPVVSFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQM 292 (306)
Q Consensus 226 ~I~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el 292 (306)
+|++|+|..+ .+++||||+||+|||+. +++ .+|||++++ ..|++.+|+++|+|+|+++++|++||
T Consensus 81 vi~~~~e~~~~~~~~~~~~~~~~~~KPvV~~k~Grs~~-g~~aa~sht~~~a~-~~g~~~~~~aa~r~aGvi~v~~~~el 158 (166)
T d2nu7a2 81 AIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAP-KGKRMGHAGAIIAG-GKGTADEKFAALEAAGVKTVRSLADI 158 (166)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHHCCSCEEEEEECTTCC-TTCCCSSTTCCCGG-GCCCHHHHHHHHHTTTCEECSSGGGH
T ss_pred EEEEEEecccchhhHHHHHHHHhcCCCeEEEeCCcCCc-chhhhhccchhccC-CCCCHHHHHHHHHHCCceEeCCHHHH
Confidence 9999999987 35799999999999986 554 699999984 44899999999999999999999999
Q ss_pred HHHHHHHH
Q psy8894 293 GNELLKEM 300 (306)
Q Consensus 293 ~~~~~~~~ 300 (306)
+++++.+|
T Consensus 159 ~~~l~~vl 166 (166)
T d2nu7a2 159 GEALKTVL 166 (166)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999874
|
| >d2csua2 c.23.4.1 (A:130-290) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.5e-39 Score=273.72 Aligned_cols=143 Identities=23% Similarity=0.320 Sum_probs=116.5
Q ss_pred CceecCccccccCCCCCCCCCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEE
Q psy8894 148 PGIIAPEQCKIGIMPGHIHQRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGI 227 (306)
Q Consensus 148 ~Gi~~~~~~~~~~~~~~~~~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I 227 (306)
+|++|+..+.+.++.+ .++||+||+|||||+++.++++++.++|+|||++||+||+ +|+++.|+|+||.+||+||+|
T Consensus 1 lGi~n~~~~l~~tf~~-~~~~G~valiSqSG~l~~~~~~~~~~~g~G~s~~vs~Gn~--~~~~~~d~l~~l~~D~~t~~i 77 (161)
T d2csua2 1 VGIMNTHVDLNATFIT-VAKKGNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNM--ADVDFAELMEYLADTEEDKAI 77 (161)
T ss_dssp CEEEEGGGTEEEESSC-CCEECSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTC--CSSCHHHHHHHHTTCSSCCEE
T ss_pred CeeeeCcCCcccccCC-CCCCCCEEEEECCHHHHHHHHHHHHhCCCCeeEEEecCCc--cccCHHHHHHHHhcCCCCcEE
Confidence 6999997665544443 4679999999999999999999999999999999999999 999999999999999999999
Q ss_pred EEEEeeCC-----------CCCCCcEEEEEecCCCCCCCC--ccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHH
Q psy8894 228 ILIGEIGG-----------GPNAKPVVSFIAGITAPPGRR--MGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGN 294 (306)
Q Consensus 228 ~ly~E~~~-----------~~~~KPVvvlk~Grs~~~g~~--~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~ 294 (306)
++|+|+++ ..++||||++|+|||+. +++ .+|||+++ |++.+|+++|+|+|+++++|++||+|
T Consensus 78 ~l~~E~~~~~~~f~~~~r~~~~~Kpvv~~k~G~s~~-g~~aa~sHtga~a----g~~~~~~a~~~~aGvi~v~~~~el~~ 152 (161)
T d2csua2 78 ALYIEGVRNGKKFMEVAKRVTKKKPIIALKAGKSES-GARAASSHTGSLA----GSWKIYEAAFKQSGVLVANTIDEMLS 152 (161)
T ss_dssp EEEESCCSCHHHHHHHHHHHHHHSCEEEEECC-----------------------CHHHHHHHHHHTTCEEESSHHHHHH
T ss_pred EEEecCCcCHHHHHHHHHHHhccCCeeEEEeecccc-ccccccccccccc----ccHHHHHHHHHHCCceEeCCHHHHHH
Confidence 99999987 34679999999999986 553 79999999 89999999999999999999999999
Q ss_pred HHHH
Q psy8894 295 ELLK 298 (306)
Q Consensus 295 ~~~~ 298 (306)
+++.
T Consensus 153 ~a~~ 156 (161)
T d2csua2 153 MARA 156 (161)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9874
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=1.3e-27 Score=195.10 Aligned_cols=117 Identities=20% Similarity=0.261 Sum_probs=100.7
Q ss_pred cCCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 27 LTSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
|.+|++|||||+|.++++.+ .++|++.|--.++||||++ +++.|++||+||+|+|+. ||++++++|++.+.++
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~--~~i~G~~~y~sl~dlp~~--vDlvvi~vp~~~~~~~ 80 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKE--EEVQGVKAYKSVKDIPDE--IDLAIIVVPKRFVKDT 80 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSC--SEETTEECBSSTTSCSSC--CSEEEECSCHHHHHHH
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCc--cccCCeEeecchhhcCCC--CceEEEecChHHhHHH
Confidence 55799999999998888875 5666654411456999997 899999999999999987 9999999999999999
Q ss_pred HHHHHHcCCCEEEEecCCCChhH-----HHHHHHHHHHhcCCeEEccCC
Q psy8894 104 IHEALDAEMPLIVCITEGIPQLD-----MVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~Gf~e~~-----~~~~~~~~ar~~gi~iiGPNc 147 (306)
+++|.++|++.+|++++||+|.+ .++.+.++|+++|||++||||
T Consensus 81 ~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~GPNC 129 (129)
T d2csua1 81 LIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNC 129 (129)
T ss_dssp HHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSC
T ss_pred HHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEeCCCC
Confidence 99999999999999999998763 233344678999999999999
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=1.3e-25 Score=179.94 Aligned_cols=111 Identities=18% Similarity=0.264 Sum_probs=97.6
Q ss_pred cEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
++|||+|+|.++++.+ .++|+++||++ +||||+. +++.|++||++++|+|+. ||++++++|++.+.+++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V-~pVnP~~--~~i~G~~~y~sl~~lp~~--~D~vvi~vp~~~~~~~l~~~ 76 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEV-LPVNPNY--DEIEGLKCYRSVRELPKD--VDVIVFVVPPKVGLQVAKEA 76 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTC--SEETTEECBSSGGGSCTT--CCEEEECSCHHHHHHHHHHH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEE-EEEcccc--ccccCccccccchhcccc--ceEEEEEeCHHHHHHHHHHH
Confidence 6899999999988876 56888899985 5999997 899999999999999997 99999999999999999999
Q ss_pred HHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCcee
Q psy8894 108 LDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGII 151 (306)
Q Consensus 108 ~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~ 151 (306)
++.|++.+| +++|...+++. ++++++|++++||||+|+-
T Consensus 77 ~~~g~k~v~-~~~g~~~~~~~----~~a~~~gi~vigpnC~~ve 115 (116)
T d1y81a1 77 VEAGFKKLW-FQPGAESEEIR----RFLEKAGVEYSFGRCIMVE 115 (116)
T ss_dssp HHTTCCEEE-ECTTSCCHHHH----HHHHHHTCEEECSCCHHHH
T ss_pred HhcCCceEE-eccchhhHHHH----HHHHHcCCEEEcCCCCCEe
Confidence 999999988 57775444332 4789999999999999873
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.92 E-value=1.5e-25 Score=184.97 Aligned_cols=126 Identities=15% Similarity=0.119 Sum_probs=108.3
Q ss_pred cccccccccccCCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 17 IYAATRPNLRLTSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi 93 (306)
.++|..++.+|.+|++|||||+|.++++.+ .++|+++||++ +||||++ +++.|+|||++++|+|+. ||++++
T Consensus 6 ~msd~~i~~~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v-~pVnP~~--~~i~G~~~~~sl~dlp~~--iD~v~i 80 (139)
T d2d59a1 6 GLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDV-YPVNPKY--EEVLGRKCYPSVLDIPDK--IEVVDL 80 (139)
T ss_dssp CCCHHHHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHTTCEE-EEECTTC--SEETTEECBSSGGGCSSC--CSEEEE
T ss_pred cCCHHHHHHHHhcCCeEEEEeecCCCCCchHHHHHHHHHCCCEE-EEECCcc--cccCCCcccccccccCcc--ceEEEE
Confidence 578877777888899999999999888876 56788889985 5999997 899999999999999987 999999
Q ss_pred ecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceec
Q psy8894 94 YVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIA 152 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~ 152 (306)
++|++.+.+++++|++.|++.+|+.+.++.| +.+ ++++++|++++||||+.+..
T Consensus 81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~e-e~~----~~a~~~gi~vig~~C~~v~~ 134 (139)
T d2d59a1 81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR-EAS----KKADEAGLIIVANRCMMREH 134 (139)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEECTTCCCH-HHH----HHHHHTTCEEEESCCHHHHH
T ss_pred EeCHHHHHHHHHHHHHhCCCEEEEeccccCH-HHH----HHHHHCCCEEEcCCcChhhh
Confidence 9999999999999999999999864444443 322 36889999999999987654
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.92 E-value=7.4e-25 Score=175.89 Aligned_cols=129 Identities=74% Similarity=1.200 Sum_probs=122.1
Q ss_pred cccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC
Q psy8894 17 IYAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 17 ~~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp 96 (306)
+|+++.|++++++.++|.|.|.+|+.|+++.+.+++||.+++++|+|..+|+++.|+|+|.+++|+.+++++|..++|+|
T Consensus 2 ~~~~~~~sIli~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG~~~~giPVf~tV~eA~~~~~~daSvIfVP 81 (130)
T d1euca1 2 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVP 81 (130)
T ss_dssp CGGGGGGGGCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHHCCCEEEECCC
T ss_pred CccccceeEEEcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCCccccCccchhhHHHHHHhcCCcEEEEecC
Confidence 68999999999999999999999999999999999999999999999998999999999999999998888999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 97 PPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 97 ~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
|..+.+.+.||+++|++.++++|+|.+..|+.++.+.++++.+.|++||
T Consensus 82 p~~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~liGP 130 (130)
T d1euca1 82 PPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGP 130 (130)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECS
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcEEeCc
Confidence 9999999999999999999999999999998877655556777999999
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.4e-25 Score=184.37 Aligned_cols=128 Identities=13% Similarity=0.226 Sum_probs=111.7
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHH---HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFH---SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~---~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
|+|.+++.+|.+|++|||||||.++++.+ .++|++.||+.+ +|||+..++++.|.++|++++|+++. +|+++++
T Consensus 1 M~d~~i~~~L~~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~-~v~~~~~~~~i~g~~~~~~l~~i~~~--iD~v~v~ 77 (136)
T d1iuka_ 1 MNDQELRAYLSQAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVL-PVNPRFQGEELFGEEAVASLLDLKEP--VDILDVF 77 (136)
T ss_dssp CCHHHHHHHHHHCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEE-EECGGGTTSEETTEECBSSGGGCCSC--CSEEEEC
T ss_pred CCHHHHHHHHhCCCeEEEEeecCCCCCchHHHHHHHhcCCCCce-EEEeccccceeeceecccchhhccCC--CceEEEe
Confidence 45666777788899999999999998876 467888899865 89887767899999999999999987 9999999
Q ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecC
Q psy8894 95 VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAP 153 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~ 153 (306)
+|++.+.+++++|.+.|++.+| +++|+.+++.. ++|+++|+++++|||+++-.+
T Consensus 78 ~p~~~v~~~v~~~~~~g~k~i~-~q~G~~~~e~~----~~a~~~Gi~vV~~~C~~ie~~ 131 (136)
T d1iuka_ 78 RPPSALMDHLPEVLALRPGLVW-LQSGIRHPEFE----KALKEAGIPVVADRCLMVEHK 131 (136)
T ss_dssp SCHHHHTTTHHHHHHHCCSCEE-ECTTCCCHHHH----HHHHHTTCCEEESCCHHHHHH
T ss_pred ccHHHHHHHHHHHHhhCCCeEE-EecCccCHHHH----HHHHHcCCEEEcCCccHHHHH
Confidence 9999999999999999999988 69998766543 478999999999999988543
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=1.5e-21 Score=154.79 Aligned_cols=119 Identities=51% Similarity=0.857 Sum_probs=112.4
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+++++.+||.|.|.+|+.|+++.+.+++||.+++++|+|..+|+++.|+|+|.+++|+.+++++|..++|+||..+.+.+
T Consensus 2 ili~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi 81 (121)
T d1oi7a1 2 ILVNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGMEVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAA 81 (121)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCEETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHH
T ss_pred EEecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcEEECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHH
Confidence 37888999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.||+++|++.++|+|+|.+..|+.++.+ .+++.+.+++|
T Consensus 82 ~EAi~agI~liv~ITEgVPv~Dm~~i~~-~~~~~~~~liG 120 (121)
T d1oi7a1 82 LEAAHAGIPLIVLITEGIPTLDMVRAVE-EIKALGSRLIG 120 (121)
T ss_dssp HHHHHTTCSEEEECCSCCCHHHHHHHHH-HHHHHTCEEEE
T ss_pred HHHHhCCCcEEEEecCCCCHHHHHHHHH-HHHhCCCEEeC
Confidence 9999999999999999999999887764 57888999998
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.6e-21 Score=154.27 Aligned_cols=119 Identities=63% Similarity=1.008 Sum_probs=112.5
Q ss_pred cccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 25 LRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
+++++.+||.|.|.+|+.|+++.+.+++||.+++++|+|+.+|+++.|+|+|.+++|+.+++++|..++|+||..+.+.+
T Consensus 1 Ili~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~ 80 (119)
T d2nu7a1 1 ILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSI 80 (119)
T ss_dssp CSCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEEETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHH
T ss_pred CeecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 105 HEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.||++.|++.++|+|+|.+..|+.++. +.+++.+.+++|
T Consensus 81 ~EAi~agI~~iV~ITEgIP~~D~~~i~-~~~~~~~~~liG 119 (119)
T d2nu7a1 81 LEAIDAGIKLIITITEGIPTLDMLTVK-VKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHTTCSEEEECCCCCCHHHHHHHH-HHHHHHTCEEEC
T ss_pred HHHHHCCCCEEEEecCCCCHHHHHHHH-HHHhhCCCEEeC
Confidence 999999999999999999999988775 468999999997
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.8e-13 Score=114.53 Aligned_cols=119 Identities=12% Similarity=0.199 Sum_probs=94.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC---Cc--------eecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG---GK--------THLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~---g~--------~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+.+.+|+|+|++||||+.+.+.+.+. ++++++.++++.. |. ...+++++.+++++.+. +|++|+|+
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~--~DViIDFs 79 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD--FDVFIDFT 79 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS--CSEEEECS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc--cceEEEec
Confidence 34678999999999999999988775 8998888875431 11 12367788888888776 99999999
Q ss_pred CchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC-Ccee
Q psy8894 96 PPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC-PGII 151 (306)
Q Consensus 96 p~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc-~Gi~ 151 (306)
+|+.+.+.++.|.+.|++.|+ .||||++++..++. +++++.+ -++.||. +|+.
T Consensus 80 ~p~~~~~~~~~a~~~~~~~Vi-GTTG~~~~~~~~i~-~~a~~ip-i~~apN~SlGi~ 133 (162)
T d1diha1 80 RPEGTLNHLAFCRQHGKGMVI-GTTGFDEAGKQAIR-DAAADIA-IVFAANFSMTFA 133 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE-CCCCCCHHHHHHHH-HHTTTSC-EEECSCCCHHHH
T ss_pred cHHHHHHHHHHHHhccceeEE-ecCCCcHHHHHHHH-HHcCCCC-EEEEccccHHHH
Confidence 999999999999999999654 89999988765554 4666655 4778995 7864
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=2.6e-12 Score=104.19 Aligned_cols=105 Identities=17% Similarity=0.242 Sum_probs=83.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHc
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDA 110 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~ 110 (306)
||+|+|++||||+.+.+.+.+. ++++++.++++. +++.+.. .++|++|+|+.|+.+.+.++.|.++
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~------------~~~~~~~-~~~DvvIDFS~p~~~~~~~~~~~~~ 67 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD------------PLSLLTD-GNTEVVIDFTHPDVVMGNLEFLIDN 67 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC------------CTHHHHT-TTCSEEEECCCTTTHHHHHHHHHHT
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC------------chhhhcc-ccCCEEEEcccHHHHHHHHHHHHhc
Confidence 6999999999999998877664 899998898753 1233332 2499999999999999999999999
Q ss_pred CCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC-Cce
Q psy8894 111 EMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC-PGI 150 (306)
Q Consensus 111 Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc-~Gi 150 (306)
|++.| +.||||++++.+++...+++..++ -++.||. +|+
T Consensus 68 ~~~~V-iGTTG~~~~~~~~l~~~~~~~~~ipil~apNfSlGv 108 (135)
T d1yl7a1 68 GIHAV-VGTTGFTAERFQQVESWLVAKPNTSVLIAPNFTSFV 108 (135)
T ss_dssp TCEEE-ECCCCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGH
T ss_pred CCCEE-EeccccchhHHHHHHHHHHhcCCCCEEEcCCccHHH
Confidence 99965 589999988877665444556666 5778996 575
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.20 E-value=2.4e-11 Score=97.51 Aligned_cols=97 Identities=18% Similarity=0.190 Sum_probs=77.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHHc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALDA 110 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~ 110 (306)
+||+|+|++||||+.+.+.+.+.++++++.++++. . +++ + .+|++|+|+.|+.+.+.++.|.++
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~--~-----------~~~-~--~~DVvIDFS~p~~~~~~l~~~~~~ 64 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG--V-----------EEL-D--SPDVVIDFSSPEALPKTVDLCKKY 64 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE--E-----------EEC-S--CCSEEEECSCGGGHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc--H-----------HHh-c--cCCEEEEecCHHHHHHHHHHHHhc
Confidence 47999999999999998888888999988888653 1 112 2 389999999999999999999999
Q ss_pred CCCEEEEecCCCChhHHHHHHHHHHHhcCCeE-EccCC
Q psy8894 111 EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRL-IGPNC 147 (306)
Q Consensus 111 Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~i-iGPNc 147 (306)
+++. ++.|||+++++.+++. +++++ +.+ ..||+
T Consensus 65 ~~p~-ViGTTG~~~~~~~~i~-~~ak~--~pv~~a~N~ 98 (128)
T d1vm6a3 65 RAGL-VLGTTALKEEHLQMLR-ELSKE--VPVVQAYSR 98 (128)
T ss_dssp TCEE-EECCCSCCHHHHHHHH-HHTTT--SEEEECSCT
T ss_pred CCCE-EEEcCCCCHHHHHHHH-HHHhh--CCEEeeecc
Confidence 9985 5589999988766554 34443 444 57785
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.07 E-value=6.6e-11 Score=94.47 Aligned_cols=93 Identities=17% Similarity=0.124 Sum_probs=77.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHH-cCCeEEEee--CCCCCCceecCeeccC--CHHhhhhcCCCcEEEEecCchhHHH
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIE-YGTKVVGGV--SPGKGGKTHLDLPVFN--TVKEARDATGAEATVIYVPPPGAAK 102 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~-~g~~vv~~V--nP~~~g~~i~Gip~y~--sl~el~~~~~iDlavi~vp~~~~~~ 102 (306)
+++.+|+|+|| |+.|+..++.+.. .+|++++.+ ||+..|..+.|+|+|. .++++.+ ..++++++++|.+..++
T Consensus 1 ~~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~-~~i~iai~~i~~~~~~~ 78 (126)
T d2dt5a2 1 NRKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVP-GRIEIALLTVPREAAQK 78 (126)
T ss_dssp TSCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHST-TTCCEEEECSCHHHHHH
T ss_pred CCCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHh-hcccEEEEeCCHHHHHH
Confidence 46789999999 9999988876644 489999886 5777789999999994 2444433 36999999999999999
Q ss_pred HHHHHHHcCCCEEEEecCCC
Q psy8894 103 AIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 103 ~~~e~~~~Gi~~vvi~t~Gf 122 (306)
+++.|.+.||+.++.|+++-
T Consensus 79 I~d~l~~~gIk~I~~f~~~~ 98 (126)
T d2dt5a2 79 AADLLVAAGIKGILNFAPVV 98 (126)
T ss_dssp HHHHHHHHTCCEEEECSSSC
T ss_pred HHHHHHHcCCCEEeecCcee
Confidence 99999999999999988754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.95 E-value=6.4e-10 Score=92.65 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=83.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
+.||+|+|+ |++|+.+.+.+++. ++++++.++++.......+.+.+.+++++.++ +|++++++|+..+.+.+..|+
T Consensus 3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~--~D~Vvi~tp~~~h~~~a~~aL 79 (170)
T d1f06a1 3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADD--VDVLFLCMGSATDIPEQAPKF 79 (170)
T ss_dssp CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTT--CSEEEECSCTTTHHHHHHHHH
T ss_pred cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccc--cceEEEeCCCcccHHHHHHHH
Confidence 578999998 99999999988886 89999888877533345566677777777665 999999999999999999999
Q ss_pred HcCCCEEEEecCCC-Ch-hHHHHHHHHHHHhcCCeEE
Q psy8894 109 DAEMPLIVCITEGI-PQ-LDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 109 ~~Gi~~vvi~t~Gf-~e-~~~~~~~~~~ar~~gi~ii 143 (306)
++|++.+. .... .. .+..+.+.++||+.|..++
T Consensus 80 ~aG~~vv~--~~~~~~~~~~~~~~l~~~A~~~~~~~~ 114 (170)
T d1f06a1 80 AQFACTVD--TYDNHRDIPRHRQVMNEAATAAGNVAL 114 (170)
T ss_dssp TTTSEEEC--CCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred HCCCcEEE--ecCccccCHHHHHHHHHHHHhcCceEE
Confidence 99999643 3332 22 2333444568899887554
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=7e-08 Score=79.08 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=81.9
Q ss_pred cEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGGK----THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
.||+|||+ |++|+. +.+.+... ++++++..+|+.... +-.+++.|.+++++.++ +|++++++|+..+.+.+
T Consensus 2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~--~D~V~I~tp~~~h~~~~ 78 (164)
T d1tlta1 2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAAS--CDAVFVHSSTASHFDVV 78 (164)
T ss_dssp EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTT--CSEEEECSCTTHHHHHH
T ss_pred CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhh--cccccccccchhccccc
Confidence 58999998 998865 56667665 889998888875221 23478999999999765 99999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeEE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
..++++|++ +++=-| ..+.++..++. +++++.|+.+.
T Consensus 79 ~~al~~gk~-V~~EKPla~~~~e~~~l~-~~a~~~~~~~~ 116 (164)
T d1tlta1 79 STLLNAGVH-VCVDKPLAENLRDAERLV-ELAARKKLTLM 116 (164)
T ss_dssp HHHHHTTCE-EEEESSSCSSHHHHHHHH-HHHHHTTCCEE
T ss_pred cccccccce-eeccccccCCHHHHHHHH-HHHHHcCCcEE
Confidence 999999965 555333 22345555554 57899987543
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.65 E-value=9.1e-08 Score=79.79 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=83.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCC-c---eecC----eeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGG-K---THLD----LPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g-~---~i~G----ip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
.||+|||+ |++|+.+.+.+... ++++++..+++... + +..+ .++|.+++++.+..++|++++++|+..+.
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV 80 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence 47999998 99999988888776 88898887775310 0 1223 46899999998766799999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCC-CChhHHHHHHHHHHHhcCCeEE
Q psy8894 102 KAIHEALDAEMPLIVCITEG-IPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~G-f~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.+.+|+++|++ +++=-+. .+.++..++. +++++.++.+.
T Consensus 81 ~~~~~~l~~g~~-v~~EKP~~~~~~e~~~l~-~~~~~~~~~~~ 121 (184)
T d1ydwa1 81 EWAIKAAEKGKH-ILLEKPVAMNVTEFDKIV-DACEANGVQIM 121 (184)
T ss_dssp HHHHHHHTTTCE-EEECSSCSSSHHHHHHHH-HHHHTTTCCEE
T ss_pred chhhhhhhccce-eecccccccCHHHHHHHH-HHHHhhCCEEE
Confidence 999999999976 5553333 2445555554 57899887663
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.60 E-value=1.3e-07 Score=78.82 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=81.4
Q ss_pred CcEEEEEcCCCCCChH-HHHHHHHc--CCeEEEeeCCCCCC-c---eecC-eeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 30 KSKVICQGFTGKQGTF-HSKQAIEY--GTKVVGGVSPGKGG-K---THLD-LPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~-~~~~l~~~--g~~vv~~VnP~~~g-~---~i~G-ip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+.||+|||+ |..|+. +.+.+++. .+++++..++.... + +..+ ..+|.+++|+.+..++|++++++|+..+.
T Consensus 3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~ 81 (181)
T d1zh8a1 3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNL 81 (181)
T ss_dssp CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHH
T ss_pred CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccc
Confidence 578999998 888875 57777764 36888888886411 1 1124 45899999998766799999999999999
Q ss_pred HHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 102 KAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+++|+++|++ |++=-| +.+.++..++. +++++++..+
T Consensus 82 ~~~~~al~~gk~-V~~EKPl~~~~~e~~~l~-~~~~~~~~~~ 121 (181)
T d1zh8a1 82 PFIEKALRKGVH-VICEKPISTDVETGKKVV-ELSEKSEKTV 121 (181)
T ss_dssp HHHHHHHHTTCE-EEEESSSSSSHHHHHHHH-HHHHHCSSCE
T ss_pred cccccccccchh-hhcCCCCcCCHHHHHHHH-HHHHHhCCeE
Confidence 999999999965 565333 23445555554 5789988755
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.51 E-value=2.2e-07 Score=80.15 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=87.6
Q ss_pred cccccccccccccCCCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCC-c---eecC-----eeccCCHHhhh
Q psy8894 15 EEIYAATRPNLRLTSKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGG-K---THLD-----LPVFNTVKEAR 83 (306)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g-~---~i~G-----ip~y~sl~el~ 83 (306)
.+-++.....+--+++-+|+|||+ |.+|+. +.+.++.. ++++++.++++... + +-.| ++.|.|++++.
T Consensus 18 ~~~~~~~~~~~~~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell 96 (221)
T d1h6da1 18 GRPMPYAIRPMPEDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIA 96 (221)
T ss_dssp CCCCCCCSSCCCCCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGG
T ss_pred CCcCccccCCCCCCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhc
Confidence 334444444455567889999999 888863 45566554 88999898886311 1 1123 45789999988
Q ss_pred hcCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 84 DATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 84 ~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+..++|++++++|+..+.+.+.+|+++|++ +++=-+ ..+.++..++. +++++++..+
T Consensus 97 ~~~~iD~V~I~tp~~~H~~~~~~al~~gk~-v~~EKPla~~~~e~~~l~-~~a~~~~~~~ 154 (221)
T d1h6da1 97 KDPKIDAVYIILPNSLHAEFAIRAFKAGKH-VMCEKPMATSVADCQRMI-DAAKAANKKL 154 (221)
T ss_dssp GCTTCCEEEECSCGGGHHHHHHHHHHTTCE-EEECSSCCSSHHHHHHHH-HHHHHHTCCE
T ss_pred ccccceeeeeccchhhhhhHHHHhhhcchh-hhcCCCccCCHHHHHHHH-HHHHhcCCcE
Confidence 766799999999999999999999999976 444111 23455555555 5788888755
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.39 E-value=1.2e-06 Score=72.14 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
...+|+|||+ |.+|+...+.+.+. .+.++...+++. -....+.+ |.+++|+.+..++|++++++|+..+.+.+
T Consensus 6 ~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~l~~~~iD~V~I~tp~~~H~~~~ 82 (172)
T d1lc0a1 6 GKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-LGSLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI 82 (172)
T ss_dssp CSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSC-CCEETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred CCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHH-HHHhhccC-cCCHHHHHhCCCcchhhhccccccccccc
Confidence 3568999999 99998887766553 233444444443 13344555 44799998766799999999999999999
Q ss_pred HHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 105 HEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
.+|+++|.+ +++=-| ..+.++..++. +++++.|..+
T Consensus 83 ~~al~~gk~-V~~EKP~a~~~~e~~~l~-~~a~~~~~~~ 119 (172)
T d1lc0a1 83 RQFLQAGKH-VLVEYPMTLSFAAAQELW-ELAAQKGRVL 119 (172)
T ss_dssp HHHHHTTCE-EEEESCSCSCHHHHHHHH-HHHHHTTCCE
T ss_pred ccccccchh-hhcCCCccccHHHHHHHH-HHHHHcCCeE
Confidence 999999975 665333 22344555554 5789988644
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.33 E-value=1.5e-06 Score=71.02 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=77.1
Q ss_pred cEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCCc----eecCe-eccCCHHhhhhcCCCcEEEEecCchhHHHH
Q psy8894 31 SKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGGK----THLDL-PVFNTVKEARDATGAEATVIYVPPPGAAKA 103 (306)
Q Consensus 31 ~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g~----~i~Gi-p~y~sl~el~~~~~iDlavi~vp~~~~~~~ 103 (306)
.||+|||+ |.+|+. +.+.+.+. +++++ .++++.... +..+. ++|.+++++.++ ++|++++++|+..+.+.
T Consensus 2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~iD~V~I~tp~~~H~~~ 78 (167)
T d1xeaa1 2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVSATCTDYRDVLQY-GVDAVMIHAATDVHSTL 78 (167)
T ss_dssp EEEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCCCCCSSTTGGGGG-CCSEEEECSCGGGHHHH
T ss_pred eEEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccccccccHHHhccc-ccceecccccccccccc
Confidence 58999999 888854 56666665 66665 677753111 12354 478999998764 69999999999999999
Q ss_pred HHHHHHcCCCEEEEecC-CCChhHHHHHHHHHHHhcCCeE
Q psy8894 104 IHEALDAEMPLIVCITE-GIPQLDMVKVKHRLIRQSKSRL 142 (306)
Q Consensus 104 ~~e~~~~Gi~~vvi~t~-Gf~e~~~~~~~~~~ar~~gi~i 142 (306)
+.+|+++|++ +++=-+ +.+.++..++. ++++++|..+
T Consensus 79 ~~~al~~gk~-V~~EKP~~~~~~e~~~l~-~~a~~~~~~~ 116 (167)
T d1xeaa1 79 AAFFLHLGIP-TFVDKPLAASAQECENLY-ELAEKHHQPL 116 (167)
T ss_dssp HHHHHHTTCC-EEEESCSCSSHHHHHHHH-HHHHHTTCCE
T ss_pred cccccccccc-cccCCCCcCCHHHHHHHH-HHHHHcCCEE
Confidence 9999999987 554233 33445555554 5789999755
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=98.32 E-value=1.5e-06 Score=75.26 Aligned_cols=112 Identities=10% Similarity=0.076 Sum_probs=80.0
Q ss_pred CCCcEEEEEcCCCCCCh----HHHHHHHHc--CCeEEEeeCCCCCCc-------eecCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 28 TSKSKVICQGFTGKQGT----FHSKQAIEY--GTKVVGGVSPGKGGK-------THLDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~----~~~~~l~~~--g~~vv~~VnP~~~g~-------~i~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
.+|.||+|||+ |..|. .+...+++. ++++++..+|+.... .+...+.|.+++++.+..++|+++++
T Consensus 14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVS 92 (237)
T ss_dssp GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEEC
T ss_pred CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeecc
Confidence 56889999999 55433 345566653 789998888864110 12345679999999876679999999
Q ss_pred cCchhHHHHHHHHHHcCC-----CEEEEecC-CCChhHHHHHHHHHHHhc-CCe
Q psy8894 95 VPPPGAAKAIHEALDAEM-----PLIVCITE-GIPQLDMVKVKHRLIRQS-KSR 141 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~Gi-----~~vvi~t~-Gf~e~~~~~~~~~~ar~~-gi~ 141 (306)
+|+..+.+.+..|+++|+ +.|+|==+ +.+.++..++. ++++++ ++.
T Consensus 93 tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~-~~a~~~~~~~ 145 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELY-SISQQRANLQ 145 (237)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHH-HHHHTCTTCE
T ss_pred CCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHH-HHHhhcCCee
Confidence 999999999999999996 67776333 33444555554 467765 453
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.94 E-value=5.3e-05 Score=61.36 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=81.7
Q ss_pred CEEEEecChhhHHHHHHHHHhCCCceEE---------------EEecCCCCCCCCC-------HHHHHHHhhcCCCccEE
Q psy8894 170 CVGVVSRSGTLTYEAVHQTTQVGLGQTL---------------CVGIGGDPFNGTN-------FIDCLEVFLKDPETKGI 227 (306)
Q Consensus 170 ~va~vSqSG~~~~~~~~~~~~~g~g~s~---------------~vs~Gn~~~~dv~-------~~d~l~~l~~D~~t~~I 227 (306)
+|++||-||+.+..+.+.+...|+-+.. +.+..|- .|+. +.+.++-+.+||++..|
T Consensus 5 rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NP--lD~~~~~~~~~~~~~l~~~~~d~~vd~v 82 (163)
T d2csua3 5 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNP--VDMIASARGEDYYRTAKLLLQDPNVDML 82 (163)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSE--EECCTTCCHHHHHHHHHHHHHSTTCSEE
T ss_pred eEEEEECChHHHHHHHHHHHHcCCccCCCCHHHHHHHHHhCCCcccCCCc--ccccCCCCHHHHHHHHHHHHcCCCcCEE
Confidence 4999999999999999999999876532 2344554 3332 67888999999999988
Q ss_pred EEEEeeC--C-----------------CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCC
Q psy8894 228 ILIGEIG--G-----------------GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRS 288 (306)
Q Consensus 228 ~ly~E~~--~-----------------~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~ 288 (306)
++++-.. . ...+|||++.-.|-.. . ....+.|+++|+-.-++
T Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~------------------~-~~~~~~l~~~Gip~f~~ 143 (163)
T d2csua3 83 IAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV------------------S-EKAKELLEKNGIPTYER 143 (163)
T ss_dssp EEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT------------------T-HHHHHHHHTTTCCEESS
T ss_pred EEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------------h-HHHHHHHHHCCCCcCCC
Confidence 7655321 1 1357899876554321 1 23368899999999999
Q ss_pred HhHHHHHHHHHHH
Q psy8894 289 PAQMGNELLKEMK 301 (306)
Q Consensus 289 ~~el~~~~~~~~~ 301 (306)
+++-..++.++++
T Consensus 144 pe~a~~Al~~l~~ 156 (163)
T d2csua3 144 PEDVASAAYALVE 156 (163)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887665
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.87 E-value=1.3e-05 Score=64.23 Aligned_cols=88 Identities=22% Similarity=0.131 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEA 107 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~ 107 (306)
+||+|||. |+||+...++|++.|++++ ..|+.....+ -.+..+-.+.+|+... .|++++++|++.+.+++.++
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--~diIi~~v~~~~~~~~~~~~ 76 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVV-TSLEGRSPSTIERARTVGVTETSEEDVYS--CPVVISAVTPGVALGAARRA 76 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEE-ECCTTCCHHHHHHHHHHTCEECCHHHHHT--SSEEEECSCGGGHHHHHHHH
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEE-EEcCchhHHHHHhhhcccccccHHHHHhh--cCeEEEEecCchHHHHHHhh
Confidence 47999999 9999999999999999975 5565431111 1244556678888876 99999999999999999888
Q ss_pred HHcCCCEEEEecCCC
Q psy8894 108 LDAEMPLIVCITEGI 122 (306)
Q Consensus 108 ~~~Gi~~vvi~t~Gf 122 (306)
...-=+.++.+|+..
T Consensus 77 ~~~~~~~~id~st~~ 91 (152)
T d1i36a2 77 GRHVRGIYVDINNIS 91 (152)
T ss_dssp HTTCCSEEEECSCCC
T ss_pred cccCCceeeccCcCC
Confidence 765444444455554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.83 E-value=7.5e-05 Score=60.30 Aligned_cols=109 Identities=15% Similarity=0.206 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHH-HH--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAK-AI-- 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~-~~-- 104 (306)
++|++||. |+||+...++|.+.||+++ ..|.+.... .-.+.....+..|+.+. .|++++++|.....+ ++
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~~--~d~ii~~v~~~~~v~~v~~~ 76 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLV-VSDRNPEAIADVIAAGAETASTAKAIAEQ--CDVIITMLPNSPHVKEVALG 76 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECSSHHHHHHH--CSEEEECCSSHHHHHHHHHS
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEE-EEeCCcchhHHHHHhhhhhcccHHHHHhC--CCeEEEEcCCHHHHHHHHhC
Confidence 47999999 9999999999999999975 556543101 12467788899999887 999999998654444 43
Q ss_pred -HHHHH-cCC-CEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc
Q psy8894 105 -HEALD-AEM-PLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP 145 (306)
Q Consensus 105 -~e~~~-~Gi-~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP 145 (306)
+.+.. ..- +.++..++..+ +...++. +.+++.|++++..
T Consensus 77 ~~~~~~~~~~g~iiid~sT~~p-~~~~~~~-~~~~~~g~~~vda 118 (161)
T d1vpda2 77 ENGIIEGAKPGTVLIDMSSIAP-LASREIS-DALKAKGVEMLDA 118 (161)
T ss_dssp TTCHHHHCCTTCEEEECSCCCH-HHHHHHH-HHHHTTTCEEEEC
T ss_pred CcchhhccCCCCEEEECCCCCH-HHHHHHH-HHHHHcCCceecc
Confidence 22333 222 33444555443 3334443 3467788877743
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.79 E-value=1.4e-05 Score=64.43 Aligned_cols=93 Identities=15% Similarity=0.166 Sum_probs=69.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e 106 (306)
++|++||+ |+||+...+.|.+.|++++ ..+++... + +..|+....+..++.+. .|+++++++|+.+.+++++
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~-v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~--~dvIilavkp~~~~~vl~~ 76 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELI-ISGSSLERSKEIAEQLALPYAMSHQDLIDQ--VDLVILGIKPQLFETVLKP 76 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEE-EECSSHHHHHHHHHHHTCCBCSSHHHHHHT--CSEEEECSCGGGHHHHHTT
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEE-EEcChHHhHHhhccccceeeechhhhhhhc--cceeeeecchHhHHHHhhh
Confidence 47999999 9999999999998898864 44443210 1 23488888899999876 9999999999998888876
Q ss_pred HHHcCCCEEEEecCCCChhHHHH
Q psy8894 107 ALDAEMPLIVCITEGIPQLDMVK 129 (306)
Q Consensus 107 ~~~~Gi~~vvi~t~Gf~e~~~~~ 129 (306)
.. .+ +.++-+++|.+-+.+++
T Consensus 77 l~-~~-~~iis~~agi~~~~l~~ 97 (152)
T d2ahra2 77 LH-FK-QPIISMAAGISLQRLAT 97 (152)
T ss_dssp SC-CC-SCEEECCTTCCHHHHHH
T ss_pred cc-cc-eeEecccccccHHHHHh
Confidence 42 33 34566788987655443
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.71 E-value=1.7e-05 Score=65.58 Aligned_cols=101 Identities=24% Similarity=0.361 Sum_probs=77.3
Q ss_pred ccccccccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC---ceecCeeccCCHHhhhhcCCCcEEEEe
Q psy8894 18 YAATRPNLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG---KTHLDLPVFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 18 ~~~~~~~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g---~~i~Gip~y~sl~el~~~~~iDlavi~ 94 (306)
|++|. .+.+-+.++|+|+|. |..|++...||++.|++++-+.-|.... .+..|+.+++ ++|+.+. -|++++.
T Consensus 5 yd~D~-dl~~ik~k~IaViGY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~-~~eA~~~--aDiim~L 79 (182)
T d1np3a2 5 YDKDC-DLSIIQGKKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVAD-VKTAVAA--ADVVMIL 79 (182)
T ss_dssp CGGGC-CHHHHHTSCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEEC-HHHHHHT--CSEEEEC
T ss_pred eeccC-ChHHHCCCEEEEEee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccccc-HHHHhhh--cCeeeee
Confidence 44444 444556789999999 9999999999999999976566664211 1356888877 8888876 9999999
Q ss_pred cCchhHHHHHHHHHHc--CCCEEEEecCCCC
Q psy8894 95 VPPPGAAKAIHEALDA--EMPLIVCITEGIP 123 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~--Gi~~vvi~t~Gf~ 123 (306)
+|.+...++-++-++. .-...+.|+.||+
T Consensus 80 ~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfn 110 (182)
T d1np3a2 80 TPDEFQGRLYKEEIEPNLKKGATLAFAHGFS 110 (182)
T ss_dssp SCHHHHHHHHHHHTGGGCCTTCEEEESCCHH
T ss_pred cchHHHHHHHHHhhhhhcCCCcEEEEeccce
Confidence 9998888888776663 4556677999994
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=97.68 E-value=1e-05 Score=64.99 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=67.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-c---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-K---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
++|++||+ |+||+...+.|.+.| +++ ...|++... + +..|+.++.+.+++.+ .|+++++++|..+.++++
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i-~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~---~Div~lavkP~~~~~v~~ 75 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRI-YIANRGAEKRERLEKELGVETSATLPELHS---DDVLILAVKPQDMEAACK 75 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEE-EEECSSHHHHHHHHHHTCCEEESSCCCCCT---TSEEEECSCHHHHHHHHT
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcE-EEEeCChhHHHHhhhhcccccccccccccc---cceEEEecCHHHHHHhHH
Confidence 47999999 999999999888887 554 477776411 1 2347888888877643 799999999998888887
Q ss_pred HHHHcCCCEEEEecCCCChhHHH
Q psy8894 106 EALDAEMPLIVCITEGIPQLDMV 128 (306)
Q Consensus 106 e~~~~Gi~~vvi~t~Gf~e~~~~ 128 (306)
+.... -+.++-+..|.+.+..+
T Consensus 76 ~l~~~-~~~viS~~ag~~~~~l~ 97 (152)
T d1yqga2 76 NIRTN-GALVLSVAAGLSVGTLS 97 (152)
T ss_dssp TCCCT-TCEEEECCTTCCHHHHH
T ss_pred HHhhc-ccEEeecccCCCHHHHH
Confidence 76433 35555577898765543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=97.67 E-value=3.5e-05 Score=62.29 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecC-e-eccCCHHhhhhcCCCcEEEEecCchhHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLD-L-PVFNTVKEARDATGAEATVIYVPPPGAAKAIH 105 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~G-i-p~y~sl~el~~~~~iDlavi~vp~~~~~~~~~ 105 (306)
+||+|||+ |+||....+.|.+.|++++ ..|++.... .-.| + ....+++.+ ++ .|++++++|++...++++
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~-~~d~~~~~~~~a~~~~~~~~~~~~~~~~-~~--~DiIilavp~~~~~~vl~ 75 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLI-GVSRQQSTCEKAVERQLVDEAGQDLSLL-QT--AKIIFLCTPIQLILPTLE 75 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTSCSEEESCGGGG-TT--CSEEEECSCHHHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEE-EEECCchHHHHHHHhhccceeeeecccc-cc--cccccccCcHhhhhhhhh
Confidence 47999999 9999999999999999976 668763110 1122 2 233445544 33 899999999999999999
Q ss_pred HHHHc-CCCEEEEecCCC
Q psy8894 106 EALDA-EMPLIVCITEGI 122 (306)
Q Consensus 106 e~~~~-Gi~~vvi~t~Gf 122 (306)
++... .-+.+++-+.+.
T Consensus 76 ~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 76 KLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp HHGGGSCTTCEEEECCSC
T ss_pred hhhhhcccccceeecccc
Confidence 99875 344444333333
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.59 E-value=0.00036 Score=56.22 Aligned_cols=108 Identities=10% Similarity=0.121 Sum_probs=72.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHH-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHE- 106 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e- 106 (306)
++|++||. |+||+...++|.+.||++. ..|.+.... ...|.....++.|+... .|++++++|...+.+.+-.
T Consensus 2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~-~~d~~~~~~~~~~~~~~~~~~~~~e~~~~--~diii~~v~~~~~~~~v~~~ 77 (162)
T d3cuma2 2 KQIAFIGL-GHMGAPMATNLLKAGYLLN-VFDLVQSAVDGLVAAGASAARSARDAVQG--ADVVISMLPASQHVEGLYLD 77 (162)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSSHHHHHHHHHTTCEECSSHHHHHTS--CSEEEECCSCHHHHHHHHHS
T ss_pred CEEEEEEE-HHHHHHHHHHHHHCCCeEE-EEECchhhhhhhhhhhccccchhhhhccc--cCeeeecccchhhHHHHHhc
Confidence 57999999 9999999999999999964 556543100 13466677788888876 9999999998876664422
Q ss_pred ---HHH-cCCCEEEE-ecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 107 ---ALD-AEMPLIVC-ITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 107 ---~~~-~Gi~~vvi-~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
... ..-..+|+ .++.. .+...++. +.+++.|++++.
T Consensus 78 ~~~~~~~l~~g~iiid~st~~-p~~~~~~~-~~~~~~gi~~~d 118 (162)
T d3cuma2 78 DDGLLAHIAPGTLVLECSTIA-PTSARKIH-AAARERGLAMLD 118 (162)
T ss_dssp TTCHHHHSCTTCEEEECSCCC-HHHHHHHH-HHHHHTTCEEEE
T ss_pred cccccccCCCCCEEEECCCCC-HHHHHHHH-HHHHHCCCcEEe
Confidence 222 22233444 55544 44444444 356788887774
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.38 E-value=0.00091 Score=53.82 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=64.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--------Cc----------eecCeeccCCHHhhhhcCCCcEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--------GK----------THLDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--------g~----------~i~Gip~y~sl~el~~~~~iDlav 92 (306)
++|+|+|+ |.+|......|.+.|+++. .+++... +. ......+..+++|..+. .|+++
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD--ADVIL 77 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT--CSEEE
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC--CCEEE
Confidence 78999999 9999999999999999865 5554310 00 00122334567777665 99999
Q ss_pred EecCchhHHHHHHHHHHc-CCCEEEEecCCCCh
Q psy8894 93 IYVPPPGAAKAIHEALDA-EMPLIVCITEGIPQ 124 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~-Gi~~vvi~t~Gf~e 124 (306)
+++|+..+.++++++..+ .-+.+++++.|..-
T Consensus 78 i~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~~~ 110 (184)
T d1bg6a2 78 IVVPAIHHASIAANIASYISEGQLIILNPGATG 110 (184)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEESSCCSS
T ss_pred EEEchhHHHHHHHHhhhccCCCCEEEEeCCCCc
Confidence 999999999999998865 33445556777643
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.35 E-value=0.00023 Score=56.78 Aligned_cols=92 Identities=15% Similarity=0.040 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCCCceec----CeeccCCHHhhhhcCCCcEEEEecCchhHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKGGKTHL----DLPVFNTVKEARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~g~~i~----Gip~y~sl~el~~~~~iDlavi~vp~~~~~ 101 (306)
+|.+|+|+||||-.|+...+.|.+. .+++...-..+..|+.+. .+++ .++++... .++|+++.++|.....
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~-~~~~~~~~-~~~d~vf~a~p~~~s~ 78 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV-GDVDSFDF-SSVGLAFFAAAAEVSR 78 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC-EEGGGCCG-GGCSEEEECSCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh-ccchhhhh-ccceEEEecCCcchhh
Confidence 4789999999999999999988754 456665556666566542 1122 22322222 2499999999999999
Q ss_pred HHHHHHHHcCCCEEEEecCCCC
Q psy8894 102 KAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+.+.++.++|++.+ -.++-|.
T Consensus 79 ~~~~~~~~~g~~VI-D~Ss~fR 99 (144)
T d2hjsa1 79 AHAERARAAGCSVI-DLSGALE 99 (144)
T ss_dssp HHHHHHHHTTCEEE-ETTCTTT
T ss_pred hhccccccCCceEE-eechhhc
Confidence 99999999998743 4576665
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.32 E-value=0.0002 Score=59.22 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc---------------------eecCeeccCCHHhhhhcCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK---------------------THLDLPVFNTVKEARDATGA 88 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~---------------------~i~Gip~y~sl~el~~~~~i 88 (306)
.||+|.|+ |+.||.+.+.+.+. ++++++..++..... +..++++...+.++.+. +
T Consensus 2 IKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~--v 78 (178)
T d1b7go1 2 VNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT--S 78 (178)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH--C
T ss_pred eEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhc--C
Confidence 47999998 99999999988876 788887655542100 01356666677777765 9
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCCEEEEecCC
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMPLIVCITEG 121 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~G 121 (306)
|+++.|||.-...+.++..++.|+|. + ++.+
T Consensus 79 DiViecTG~f~~~e~a~~hl~~G~Kv-I-i~~~ 109 (178)
T d1b7go1 79 DIVVDTTPNGVGAQYKPIYLQLQRNA-I-FQGG 109 (178)
T ss_dssp SEEEECCSTTHHHHHHHHHHHTTCEE-E-ECTT
T ss_pred CEEEECCCCcCCHHHHHHHHHcCCEE-E-EECC
Confidence 99999999999999999999999764 4 3544
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.31 E-value=0.00016 Score=58.68 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=60.8
Q ss_pred cCCCcEEEEEcCCCCCChH-HHHHHHHc-CCeEEEeeCCCCCCc-----eecCeeccCC-HHhhh---hcCCCcEEEEec
Q psy8894 27 LTSKSKVICQGFTGKQGTF-HSKQAIEY-GTKVVGGVSPGKGGK-----THLDLPVFNT-VKEAR---DATGAEATVIYV 95 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~-~~~~l~~~-g~~vv~~VnP~~~g~-----~i~Gip~y~s-l~el~---~~~~iDlavi~v 95 (306)
++++.||+|+|+ |+.|+. ..+.+++. .+++++..+.+..+. +..|++.+.. ++++. +..++|++++++
T Consensus 1 M~kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 1 MNQKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp CCSCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCCCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcC
Confidence 356789999995 999875 45666665 667877776553222 2357776653 55553 323589999999
Q ss_pred CchhHHH--HHHHHHHcCCCEEEEecC
Q psy8894 96 PPPGAAK--AIHEALDAEMPLIVCITE 120 (306)
Q Consensus 96 p~~~~~~--~~~e~~~~Gi~~vvi~t~ 120 (306)
|+..+.+ .+.++.++|+..+- .|+
T Consensus 80 pag~h~~~~~~~~aa~~G~~VID-~s~ 105 (157)
T d1nvmb1 80 SASAHVQNEALLRQAKPGIRLID-LTP 105 (157)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEE-CST
T ss_pred CchhHHHhHHHHHHHHcCCEEEE-ccc
Confidence 9877765 44556778888543 454
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.26 E-value=0.00028 Score=56.72 Aligned_cols=91 Identities=22% Similarity=0.143 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCe---EEEeeCCCCCCceec----CeeccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTK---VVGGVSPGKGGKTHL----DLPVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~---vv~~VnP~~~g~~i~----Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
||||+||||-.|....+.|.++.|. +...-..+..|+.+. ........++... +.|+++++.|+..+.+.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~--~~d~~f~~~~~~~s~~~~ 80 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFE--GVDIALFSAGSSTSAKYA 80 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTT--TCSEEEECSCHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhh--hhhhhhhccCccchhhHH
Confidence 7999999999999999999888653 332234444444332 1223333333333 489999999999999999
Q ss_pred HHHHHcCCCEEEEecCCCChh
Q psy8894 105 HEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
.++.+.|++.|= .++-|..+
T Consensus 81 ~~~~~~~~~VID-lSsdfR~~ 100 (154)
T d2gz1a1 81 PYAVKAGVVVVD-NTSYFRQN 100 (154)
T ss_dssp HHHHHTTCEEEE-CSSTTTTC
T ss_pred hhhccccceehh-cChhhhcc
Confidence 999999998554 68877644
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.23 E-value=0.00071 Score=55.43 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=63.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEee---CCCCCCceecC-ee-----------ccCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGV---SPGKGGKTHLD-LP-----------VFNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~V---nP~~~g~~i~G-ip-----------~y~sl~el~~~~~iDlavi~ 94 (306)
.+|+|+||||-.|+...+.|.++ .+++.+.. ..+..|+.+.. .| ...+..+... ++|+++.+
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dvvf~a 79 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSA--DVDVVFLA 79 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCT--TCCEEEEC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhc--ccceeecc
Confidence 58999999999999999999998 88865442 12222333211 01 1111222222 49999999
Q ss_pred cCchhHHHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 95 VPPPGAAKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 95 vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
.|.....+.+..+.+.|++.+ -.+..|...
T Consensus 80 lp~~~s~~~~~~~~~~~~~vI-DlSadfRl~ 109 (179)
T d2g17a1 80 TAHEVSHDLAPQFLQAGCVVF-DLSGAFRVN 109 (179)
T ss_dssp SCHHHHHHHHHHHHHTTCEEE-ECSSTTSSS
T ss_pred ccchhHHHHhhhhhhcCceee-ccccccccc
Confidence 999999999999999999854 468777543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00065 Score=53.85 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=62.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee---------cCeeccCCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH---------LDLPVFNTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i---------~Gip~y~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
+||+|+|+ |.+|+.....|.+.|+++. .++...... .. ....+..+..+.... +|++++++++..+
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~iii~vka~~~ 76 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQ-GWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT--SDLLLVTLKAWQV 76 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT--CSEEEECSCGGGH
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceE-EEEcCHHHhhhhccccCCccccccccccchhhhhcc--cceEEEeecccch
Confidence 58999999 9999999999999999865 554432111 10 111222233344444 9999999999999
Q ss_pred HHHHHHHHHcC--CCEEEEecCCCChhH
Q psy8894 101 AKAIHEALDAE--MPLIVCITEGIPQLD 126 (306)
Q Consensus 101 ~~~~~e~~~~G--i~~vvi~t~Gf~e~~ 126 (306)
.++++.+...- =..|+.++.|+..++
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~~~~~ 104 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGMGTIE 104 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred HHHHHhhccccCcccEEeeccCcccHHH
Confidence 99999988642 233666788986543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=97.12 E-value=0.00063 Score=54.61 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=61.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCe-EEEeeCCCCCCce---ecCe--eccCCHHhhhhcCCCcEEEEecCchhHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTK-VVGGVSPGKGGKT---HLDL--PVFNTVKEARDATGAEATVIYVPPPGAAKAI 104 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~-vv~~VnP~~~g~~---i~Gi--p~y~sl~el~~~~~iDlavi~vp~~~~~~~~ 104 (306)
++|+|+|+ |.+|....+.|.+.|+. -|+++|++....+ -.|. ....+.++... ...|++++++|++.+.+++
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~dlIila~p~~~~~~vl 79 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVED-FSPDFVMLSSPVRTFREIA 79 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGG-TCCSEEEECSCHHHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhc-cccccccccCCchhhhhhh
Confidence 47999999 99999999999998874 4557888741101 1232 23344554443 2489999999999999999
Q ss_pred HHHHHc-CCCEEEEecCC
Q psy8894 105 HEALDA-EMPLIVCITEG 121 (306)
Q Consensus 105 ~e~~~~-Gi~~vvi~t~G 121 (306)
+++... .-..+++-..+
T Consensus 80 ~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGS 97 (171)
T ss_dssp HHHHHHSCTTCEEEECCS
T ss_pred hhhhcccccccccccccc
Confidence 998774 45555543333
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.11 E-value=0.0003 Score=57.80 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce----------------------ecCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT----------------------HLDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~----------------------i~Gip~y~sl~el~~~~~ 87 (306)
.||+|.|+ |+.||.+.+.+.+. ++++++.-++...... ..++++..++.++.+.
T Consensus 3 irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 79 (172)
T d2czca2 3 VKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred EEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc--
Confidence 68999999 99999999988775 7888866554421010 0134444456665544
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEE
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vv 116 (306)
+|+++.|+|.-...+.++.-+++|+|.|+
T Consensus 80 vDvViEcTG~f~~~~~~~~hl~~G~k~Vi 108 (172)
T d2czca2 80 VDIIVDATPGGIGAKNKPLYEKAGVKAIF 108 (172)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEECCCCCCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999765
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.09 E-value=0.0004 Score=57.69 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEE-Eee-------------CCCCC-Cce-ecCeeccCCHHhhhhcCCCcEEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVV-GGV-------------SPGKG-GKT-HLDLPVFNTVKEARDATGAEATVI 93 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~V-------------nP~~~-g~~-i~Gip~y~sl~el~~~~~iDlavi 93 (306)
.++|+|+|+ |.+|++....|.+.|.++. +.- ||++- +-. -..+.+..+++++.+. .|++++
T Consensus 7 m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~--ad~iii 83 (189)
T d1n1ea2 7 LNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG--AEIILF 83 (189)
T ss_dssp EEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT--CSCEEE
T ss_pred eceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC--CCEEEE
Confidence 357999999 9999998888888777743 222 22210 001 1245566678888765 899999
Q ss_pred ecCchhHHHHHHHHH--------HcCCCEEEEecCCCChh
Q psy8894 94 YVPPPGAAKAIHEAL--------DAEMPLIVCITEGIPQL 125 (306)
Q Consensus 94 ~vp~~~~~~~~~e~~--------~~Gi~~vvi~t~Gf~e~ 125 (306)
++|.....+++++.. ..+... ++.|-|+...
T Consensus 84 avPs~~~~~~~~~~~~~~~~~~~~~~~~i-i~~tKGie~~ 122 (189)
T d1n1ea2 84 VIPTQFLRGFFEKSGGNLIAYAKEKQVPV-LVCTKGIERS 122 (189)
T ss_dssp CSCHHHHHHHHHHHCHHHHHHHHHHTCCE-EECCCSCCTT
T ss_pred cCcHHHHHHHHHHHHhhhhhhhccCCcEE-EEEECCCccC
Confidence 999999999888753 455664 4568898433
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.06 E-value=0.0006 Score=55.53 Aligned_cols=109 Identities=9% Similarity=0.052 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-ee----------cCeeccCCHHhhhhcCCCcEEEEecCch-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-TH----------LDLPVFNTVKEARDATGAEATVIYVPPP- 98 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i----------~Gip~y~sl~el~~~~~iDlavi~vp~~- 98 (306)
.+|++||. |+||+...++|.+.||+++ +.|.+...- +. .|.....++.+... ..|.+++++|..
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~ 78 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQ 78 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEE-EEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchH
Confidence 57999999 9999999999999999975 556543100 10 12222223334433 389999888774
Q ss_pred hHHHHHHHHHHcC-CCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 99 GAAKAIHEALDAE-MPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 99 ~~~~~~~e~~~~G-i~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.+.++.+.+...- -..+|+-++-...++..++.+ .+++.|++++.
T Consensus 79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~-~~~~~g~~~ld 124 (176)
T d2pgda2 79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR-DLKDKGILFVG 124 (176)
T ss_dssp HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH-HHHHTTCEEEE
T ss_pred HHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH-HHHhcCCceec
Confidence 5566666666532 223444333333344444433 45777887774
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.04 E-value=0.0021 Score=50.55 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEAL 108 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~ 108 (306)
+.++|+|||..|.||+...++|.+.||++. ..|... . .+.++..+. .|.+++++|...+.+++++..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~-~~d~~~--~--------~~~~~~~~~--~~~v~~~~~~~~~~~v~~~~~ 74 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPIS-ILDRED--W--------AVAESILAN--ADVVIVSVPINLTLETIERLK 74 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEE-EECTTC--G--------GGHHHHHTT--CSEEEECSCGGGHHHHHHHHG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcE-eccccc--c--------cccchhhhh--ccccccccchhhheeeeeccc
Confidence 346899999559999999999999999975 666653 1 223444444 899999999999999999998
Q ss_pred HcC-CCEEEEecCCCChh
Q psy8894 109 DAE-MPLIVCITEGIPQL 125 (306)
Q Consensus 109 ~~G-i~~vvi~t~Gf~e~ 125 (306)
..- -..+|+-.+....+
T Consensus 75 ~~~~~~~iiiD~~Svk~~ 92 (152)
T d2pv7a2 75 PYLTENMLLADLTSVKRE 92 (152)
T ss_dssp GGCCTTSEEEECCSCCHH
T ss_pred ccccCCceEEEecccCHH
Confidence 753 34455544555443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.01 E-value=0.00079 Score=53.88 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=60.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-C---CeEEEeeCCCCCCceecC----eeccCCHH-hhhhcCCCcEEEEecCchhHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-G---TKVVGGVSPGKGGKTHLD----LPVFNTVK-EARDATGAEATVIYVPPPGAA 101 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g---~~vv~~VnP~~~g~~i~G----ip~y~sl~-el~~~~~iDlavi~vp~~~~~ 101 (306)
+||+|+|+||-.|+...+.|+++ . .++...-..+..|+.+.- ...+...+ +... ++|+++.++|...+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~--~~DvvF~alp~~~s~ 78 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLK--QLDAVITCQGGSYTE 78 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHT--TCSEEEECSCHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhc--cccEEEEecCchHHH
Confidence 47999999999999988877753 2 445433333333332211 11221111 2223 499999999999999
Q ss_pred HHHHHHHHcCCCEEEE-ecCCCC
Q psy8894 102 KAIHEALDAEMPLIVC-ITEGIP 123 (306)
Q Consensus 102 ~~~~e~~~~Gi~~vvi-~t~Gf~ 123 (306)
+.++++.+.|.+.+|| .++-|.
T Consensus 79 ~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 79 KVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp HHHHHHHHTTCCSEEEESSSTTT
T ss_pred HHhHHHHHcCCceEEEeCCcccc
Confidence 9999999999985443 677775
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.00 E-value=0.00057 Score=56.06 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=63.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEE-Ee--eC-------------CCCCCceecC--eeccCCHHhhhhcCCCcEEE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVV-GG--VS-------------PGKGGKTHLD--LPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv-~~--Vn-------------P~~~g~~i~G--ip~y~sl~el~~~~~iDlav 92 (306)
++|+|+|+ |.+|......|.+.|.++. +. .| |.. +..+.. +....+++++.+. .|+++
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~--ad~Ii 76 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRL-GVKLNGVEIFWPEQLEKCLEN--AEVVL 76 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTT-TBCCCSEEEECGGGHHHHHTT--CSEEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhh-cchhccccccccccHHHHHhc--cchhh
Confidence 57999999 9999999988888888853 32 12 111 011122 2334567777665 99999
Q ss_pred EecCchhHHHHHHHHHHc-CCCEEEEecCCCC
Q psy8894 93 IYVPPPGAAKAIHEALDA-EMPLIVCITEGIP 123 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~-Gi~~vvi~t~Gf~ 123 (306)
+++|+....++++++... .-+.+++.+.|..
T Consensus 77 ~avps~~~~~~~~~l~~~l~~~~ii~~tkg~~ 108 (180)
T d1txga2 77 LGVSTDGVLPVMSRILPYLKDQYIVLISKGLI 108 (180)
T ss_dssp ECSCGGGHHHHHHHHTTTCCSCEEEECCCSEE
T ss_pred cccchhhhHHHHHhhccccccceecccccCcc
Confidence 999999999999998774 3456666777874
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.00094 Score=54.98 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec-------C-eecc-CCHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL-------D-LPVF-NTVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~-------G-ip~y-~sl~el~~~~~iDlavi~vp~~~~ 100 (306)
.||+|+||||-.|...++.|.++ .+++......+..|+.+. + ..+. .+.+++.+. +|++.+++|....
T Consensus 2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~--~dvvf~a~p~~~s 79 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKN--CDVLFTALPAGAS 79 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHH--CSEEEECCSTTHH
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccc--cceEEEccccHHH
Confidence 58999999999999999999887 677776655555555432 1 1121 245566554 9999999999998
Q ss_pred HHHHHHHHHcCCCEEEEecCCCChh
Q psy8894 101 AKAIHEALDAEMPLIVCITEGIPQL 125 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi~t~Gf~e~ 125 (306)
.+.+.+ ..+++ |+=.++.|.-+
T Consensus 80 ~~~~~~--~~~~~-VIDlSadfRl~ 101 (176)
T d1vkna1 80 YDLVRE--LKGVK-IIDLGADFRFD 101 (176)
T ss_dssp HHHHTT--CCSCE-EEESSSTTTCS
T ss_pred HHHHHh--hccce-EEecCcccccc
Confidence 887765 35665 44578888643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.88 E-value=0.00081 Score=55.42 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCceec---------CeeccCCHH-hhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKTHL---------DLPVFNTVK-EARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~i~---------Gip~y~sl~-el~~~~~iDlavi~vp~ 97 (306)
+..||+|+||||-.|....+.|.++ .+++...-..+..|+.+. ..+.+.... +... ++|++..++|.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvf~alp~ 81 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFS--NVDAVFCCLPH 81 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGG--GCSEEEECCSS
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhc--ccceeeecccc
Confidence 5678999999999999999999887 778766655555555431 122222222 2223 49999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
....+.+..+.+.+ + ++..+..|.
T Consensus 82 ~~s~~~~~~l~~~~-~-~v~~~~~~~ 105 (183)
T d2cvoa1 82 GTTQEIIKGLPQEL-K-IVDLSADFR 105 (183)
T ss_dssp SHHHHHHHTSCSSC-E-EEECSSTTT
T ss_pred chHHHHHHHHHhcC-c-ccccchhhh
Confidence 99999998766554 3 344566664
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.0014 Score=52.18 Aligned_cols=90 Identities=9% Similarity=0.002 Sum_probs=59.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CC---eEEEeeCCCCCCceec----CeeccCC--HHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GT---KVVGGVSPGKGGKTHL----DLPVFNT--VKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~---~vv~~VnP~~~g~~i~----Gip~y~s--l~el~~~~~iDlavi~vp~~~~ 100 (306)
++|+|+||||-.|+...+.|+++ .| +++..-..+..+..+. ....... ..++ . ++|+++.++|.+.+
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~-~--~~DivF~a~~~~~s 78 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL-K--ALDIIVTCQGGDYT 78 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH-H--TCSEEEECSCHHHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh-h--cCcEEEEecCchHH
Confidence 48999999999999888876653 33 3443333333232221 1122221 2223 2 49999999999999
Q ss_pred HHHHHHHHHcCCCEEEE-ecCCCC
Q psy8894 101 AKAIHEALDAEMPLIVC-ITEGIP 123 (306)
Q Consensus 101 ~~~~~e~~~~Gi~~vvi-~t~Gf~ 123 (306)
.+...++.+.|.+.+|+ .++-|.
T Consensus 79 ~~~~~~~~~~g~~~~VID~Ss~fR 102 (146)
T d1t4ba1 79 NEIYPKLRESGWQGYWIDAASSLR 102 (146)
T ss_dssp HHHHHHHHHTTCCCEEEECSSTTT
T ss_pred HHhhHHHHhcCCCeecccCCcccc
Confidence 99999999999985554 556664
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.86 E-value=0.00071 Score=53.96 Aligned_cols=106 Identities=9% Similarity=-0.037 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--CceecCeeccCCHHhhhhcCCCcEEEEecCchhH-HHHHHHHH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--GKTHLDLPVFNTVKEARDATGAEATVIYVPPPGA-AKAIHEAL 108 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~-~~~~~e~~ 108 (306)
||++||. |+||....++|.+.|+.+++ |.... -+.........+..+...+ .|+.++++|.... ......+.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~v~~~~~~l~ 76 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTLVW--NRTFEKALRHQEEFGSEAVPLERVAE--ARVIFTCLPTTREVYEVAEALY 76 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEEEE--CSSTHHHHHHHHHHCCEECCGGGGGG--CSEEEECCSSHHHHHHHHHHHT
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEEEE--eCCHHHHHHHHHHcCCcccccccccc--eeEEEecccchhhhhhhhcccc
Confidence 6999999 99999999999998887653 33320 0111111122333333333 7888888877543 44445444
Q ss_pred HcC-CCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 109 DAE-MPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 109 ~~G-i~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
... -..+|+-++-.+.+...++. +.++++|++++
T Consensus 77 ~~~~~~~~iid~sT~~p~~~~~~~-~~~~~~gi~~l 111 (156)
T d2cvza2 77 PYLREGTYWVDATSGEPEASRRLA-ERLREKGVTYL 111 (156)
T ss_dssp TTCCTTEEEEECSCCCHHHHHHHH-HHHHTTTEEEE
T ss_pred ccccccccccccccCCHHHHHHHH-HHHHHcCCeEE
Confidence 432 33444433333344444444 35678888777
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.002 Score=53.03 Aligned_cols=89 Identities=20% Similarity=0.217 Sum_probs=60.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEee-CCCCC-CceecCeeccC-------CHHhhhhcCCCcEEEEecCc---
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGV-SPGKG-GKTHLDLPVFN-------TVKEARDATGAEATVIYVPP--- 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V-nP~~~-g~~i~Gip~y~-------sl~el~~~~~iDlavi~vp~--- 97 (306)
.+||+|+|+||..|+.+.+.|++.|+++.+.+ ||... ...-.++.++. ++.++.. ++|+++.++..
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~~~~ 80 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGTRND 80 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhc--CCCEEEEEeccCCc
Confidence 47899999999999999999999999987554 34321 01112333222 2344443 48999887643
Q ss_pred --------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 98 --------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 --------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
..+..+++.+.++|++.++.+++
T Consensus 81 ~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss 111 (205)
T d1hdoa_ 81 LSPTTVMSEGARNIVAAMKAHGVDKVVACTS 111 (205)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred hhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence 23456788888899998887654
|
| >d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.62 E-value=0.0066 Score=48.29 Aligned_cols=111 Identities=14% Similarity=0.199 Sum_probs=84.3
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+||++.--++++.+.++.....|--..-|.-+|+.+ ..-.+.+.++.+.+||++|+|++=+=+. +
T Consensus 17 LdG~IG~i~NGAGlaMaTmD~i~~~Gg~pANFlDiGGga-~~e~v~~al~iil~d~~Vk~IlINIfGGI~rcD~vA~GIv 95 (148)
T d1eucb1 17 LDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV-KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGIT 95 (148)
T ss_dssp CSCSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSSC-CHHHHHHHHHHTTSCTTCCEEEEEEECSSSCHHHHHHHHH
T ss_pred ecCcEEEEecCCccchhHHHHHHHcCCCeeeEEecCCCC-CHHHHHHHHHHHHCCCCccEEEEEeeEeehhHHHHHHHHH
Confidence 458999999999999999999999999999999999983 2235788899999999999998643221 2
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCC--eEeCCHhHHHHHHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGV--IVTRSPAQMGNELLKEMK 301 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGv--i~~~~~~el~~~~~~~~~ 301 (306)
....+|||+=-.|..+. .=...|+++|+ ..++| |.++++..-+
T Consensus 96 ~A~~e~~~~iPiVVRL~Gtn~e--------------------eg~~iL~~sgl~i~~~~~---l~eAa~~aV~ 145 (148)
T d1eucb1 96 KACRELELKVPLVVRLEGTNVH--------------------EAQNILTNSGLPITSAVD---LEDAAKKAVA 145 (148)
T ss_dssp HHHHHHTCCSCEEEEEESTTHH--------------------HHHHHHHTTCSSEEECSS---HHHHHHHHHH
T ss_pred HHHHhcCCCccEEEEeccCChH--------------------HHHHHHHHCCCCeEEeCC---HHHHHHHHHH
Confidence 25789999998888642 11578899995 34555 4455554433
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.54 E-value=0.0026 Score=52.32 Aligned_cols=63 Identities=30% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCch
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPP 98 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~ 98 (306)
+-++|+|+|+ |+.|+...+.+..+|++++ ..||.. .+ ...+.+.+++++..+ .|++++++|-.
T Consensus 41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~-~~d~~~--~~-~~~~~~~~l~ell~~--sDiv~~~~pl~ 103 (181)
T d1qp8a1 41 QGEKVAVLGL-GEIGTRVGKILAALGAQVR-GFSRTP--KE-GPWRFTNSLEEALRE--ARAAVCALPLN 103 (181)
T ss_dssp TTCEEEEESC-STHHHHHHHHHHHTTCEEE-EECSSC--CC-SSSCCBSCSHHHHTT--CSEEEECCCCS
T ss_pred cCceEEEecc-ccccccceeeeeccccccc-cccccc--cc-cceeeeechhhhhhc--cchhhcccccc
Confidence 4588999999 9999999999999999976 667764 22 234556789999876 99999998863
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.54 E-value=0.0062 Score=47.99 Aligned_cols=106 Identities=12% Similarity=0.102 Sum_probs=70.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-c----eecCeec-----cC--CHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-K----THLDLPV-----FN--TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~----~i~Gip~-----y~--sl~el~~~~~iDlavi~vp~ 97 (306)
.++|.|+|+ |.+|+...+.|.+.|++++ .+|.+... + +...... +. .+++.... .|.++.++|.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~-v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~i~~~~~ 77 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK--HDLVISLIPY 77 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEE-EEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTT--SSEEEECSCG
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEE-EEECChHHHHHHHhcccccccccccccchhhhHhhhhc--cceeEeeccc
Confidence 479999999 9999999999999999864 77766411 0 1111111 11 23333333 8999999999
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
......+..+.+.+.+.+ ...+..+...++. +.+++.+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~-~~~~~~~~~~~ 119 (182)
T d1e5qa1 78 TFHATVIKSAIRQKKHVV---TTSYVSPAMMELD-QAAKDAGITVM 119 (182)
T ss_dssp GGHHHHHHHHHHHTCEEE---CSSCCCHHHHHTH-HHHHHTTCEEE
T ss_pred hhhhHHHHHHHhhcccee---ecccCcHHHHHHH-HHhccccceee
Confidence 999999999999987743 3333333344433 34566665554
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.49 E-value=0.0024 Score=54.17 Aligned_cols=167 Identities=11% Similarity=0.108 Sum_probs=96.2
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHc------CCeEEEeeCCCCCC---ceecCeeccC----CHHhhhhcCCCcEEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEY------GTKVVGGVSPGKGG---KTHLDLPVFN----TVKEARDATGAEATV 92 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~------g~~vv~~VnP~~~g---~~i~Gip~y~----sl~el~~~~~iDlav 92 (306)
.+...++|+|+|. |..|++...||++. |.+++-++.+.... .+-.|..+.. +++|+... -|+++
T Consensus 40 ~~kg~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~--ADiVm 116 (226)
T d1qmga2 40 AFKGIKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISG--SDLVL 116 (226)
T ss_dssp HTTTCSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHT--CSEEE
T ss_pred HhcCCCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhh--CCEEE
Confidence 3455689999999 99999999999995 46665566665311 1345765322 47777765 89999
Q ss_pred EecCchhHHHHHHHHHH-cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCCCCCCCCE
Q psy8894 93 IYVPPPGAAKAIHEALD-AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGHIHQRGCV 171 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~-~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~~~~~G~v 171 (306)
+.+|.+...++-++... ..-...+.|+-||+-.-......+.-+.-++-++-|-+.|-.--....-+-.-..--.|.-|
T Consensus 117 iLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~Li 196 (226)
T d1qmga2 117 LLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSF 196 (226)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEE
T ss_pred EecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCCCceEEEECCCCCCchHHHHHHcccccCCCCceeEE
Confidence 99999999888876443 34555677999994311110000001223456667888775542211000000000123335
Q ss_pred EEEec-ChhhHHHHHHHHHhCCCce
Q psy8894 172 GVVSR-SGTLTYEAVHQTTQVGLGQ 195 (306)
Q Consensus 172 a~vSq-SG~~~~~~~~~~~~~g~g~ 195 (306)
|+--- ||.--.-.+.|+..-|-|+
T Consensus 197 AV~QD~sG~A~~~alayA~aIG~g~ 221 (226)
T d1qmga2 197 AVHQDVDGRATDVALGWSIALGSPF 221 (226)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCcHHHHHHHHHHhCCCCc
Confidence 55443 5544444456666555554
|
| >d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Succinyl-CoA synthetase, beta-chain, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0099 Score=47.38 Aligned_cols=113 Identities=15% Similarity=0.195 Sum_probs=85.2
Q ss_pred CCCCEEEEecChhhHHHHHHHHHhCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCccEEEEEEeeC--C---------
Q psy8894 167 QRGCVGVVSRSGTLTYEAVHQTTQVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETKGIILIGEIG--G--------- 235 (306)
Q Consensus 167 ~~G~va~vSqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~~I~ly~E~~--~--------- 235 (306)
..|+||++.--++++.+.++.....|--..-|.-+|+.+ ..-.+.+.++.+..||++|+|++=+=+. +
T Consensus 17 LdG~Ig~i~nGAGlamaTmD~i~~~Gg~pANFlDiGG~a-~~e~v~~al~lil~d~~vk~IlINifGGI~rcd~vA~GIv 95 (150)
T d2nu7b1 17 LDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA-TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGII 95 (150)
T ss_dssp CSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCC-CHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHH
T ss_pred ecCcEEEEEcCCccchhhHHHHHHCCCCeeEEEecCCCc-cHHHHHHHHHHHHcCCCCCEEEEEEeeeeehhHHHHHHHH
Confidence 358999999999999999999999999999999999884 2336778889999999999998743321 1
Q ss_pred -----CCCCCcEEEEEecCCCCCCCCccCCcccccCCCCCHHHHHHHHHHcCCeEeCCHhHHHHHHHHHHH
Q psy8894 236 -----GPNAKPVVSFIAGITAPPGRRMGHAGAIISGGKGGAQDKIDALEKAGVIVTRSPAQMGNELLKEMK 301 (306)
Q Consensus 236 -----~~~~KPVvvlk~Grs~~~g~~~sHtga~a~~~~g~~~~~~a~~~~aGvi~~~~~~el~~~~~~~~~ 301 (306)
...++|||+=-.|+.+. .=...|+++|+- +.+.++|.++++.+.+
T Consensus 96 ~A~k~~~~~iPiVVRl~Gtn~e--------------------eg~~iL~~~gl~-i~~~~~l~eAa~~aV~ 145 (150)
T d2nu7b1 96 GAVAEVGVNVPVVVRLEGNNAE--------------------LGAKKLADSGLN-IIAAKGLTDAAQQVVA 145 (150)
T ss_dssp HHHHHHTCCSCEEEEEESTTHH--------------------HHHHHHHHHCSS-EEECSSHHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEecCCCHH--------------------HHHHHHHHCCCC-eEEeCCHHHHHHHHHH
Confidence 25788999988887642 125788999964 3344555566655443
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.36 E-value=0.0025 Score=52.00 Aligned_cols=88 Identities=19% Similarity=0.221 Sum_probs=61.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCce----e------------------cCeeccCCHHhhhhcCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGKT----H------------------LDLPVFNTVKEARDATG 87 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~~----i------------------~Gip~y~sl~el~~~~~ 87 (306)
++|+|-|+ |+.||.+.+.+.+. ++++++.-++...... . .++++..++.++.++
T Consensus 2 ~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~-- 78 (171)
T d1cf2o1 2 KAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE-- 78 (171)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT--
T ss_pred eEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcC--
Confidence 58999999 99999999988776 6778765333321010 0 133444445555444
Q ss_pred CcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCC
Q psy8894 88 AEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIP 123 (306)
Q Consensus 88 iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~ 123 (306)
+|+++.|+|.-...+.++.-+++|+|.| ++++..
T Consensus 79 vDvViEcTG~f~~~~~~~~hl~~G~K~v--i~~~~~ 112 (171)
T d1cf2o1 79 ADIVIDCTPEGIGAKNLKMYKEKGIKAI--FQGGEK 112 (171)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEE--ECTTSC
T ss_pred CCEEEEccCCCCCHHHHHHHHHcCCCEE--EECCCC
Confidence 9999999999999999999999998854 355443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.11 E-value=0.0039 Score=51.95 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH--HH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI--HE 106 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~--~e 106 (306)
.++|+|+|. |+.|+.+.+.++.+|++++ ..||.......... -|.+++++... .|++++.+|... ...++ +.
T Consensus 45 ~ktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~-~~~~l~~l~~~--~D~v~~~~plt~~T~~li~~~~ 119 (199)
T d1dxya1 45 QQTVGVMGT-GHIGQVAIKLFKGFGAKVI-AYDPYPMKGDHPDF-DYVSLEDLFKQ--SDVIDLHVPGIEQNTHIINEAA 119 (199)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCSSCCTTC-EECCHHHHHHH--CSEEEECCCCCGGGTTSBCHHH
T ss_pred ceeeeeeec-ccccccccccccccceeee-ccCCccchhhhcch-hHHHHHHHHHh--cccceeeecccccccccccHHH
Confidence 478999999 9999999999999999986 67875422222232 35689999887 999999988633 23222 23
Q ss_pred HHHcCCCEEEE
Q psy8894 107 ALDAEMPLIVC 117 (306)
Q Consensus 107 ~~~~Gi~~vvi 117 (306)
.....-..++|
T Consensus 120 l~~mk~~a~lI 130 (199)
T d1dxya1 120 FNLMKPGAIVI 130 (199)
T ss_dssp HHHSCTTEEEE
T ss_pred hhccCCceEEE
Confidence 33445555543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=96.00 E-value=0.0025 Score=53.22 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-eecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-THLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
-++|+|+|. |+.|+.+.+.++.+|++++ ..||..... +..+. -+.+++++..+ .|++++++|-
T Consensus 43 gk~vgIiG~-G~IG~~va~~l~~fg~~V~-~~d~~~~~~~~~~~~-~~~~l~~~l~~--sDii~~~~pl 106 (197)
T d1j4aa1 43 DQVVGVVGT-GHIGQVFMQIMEGFGAKVI-TYDIFRNPELEKKGY-YVDSLDDLYKQ--ADVISLHVPD 106 (197)
T ss_dssp GSEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCCHHHHHTTC-BCSCHHHHHHH--CSEEEECSCC
T ss_pred CCeEEEecc-cccchhHHHhHhhhccccc-ccCccccccccccee-eeccccccccc--cccccccCCc
Confidence 578999999 9999999999999999986 678765211 12232 23579999887 9999999985
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=95.86 E-value=0.00026 Score=56.05 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=51.7
Q ss_pred EEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e--ecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 33 VICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T--HLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 33 VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~--i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
|.+||+ |+||+...+.|.+ ++.+....|.+.... + -.+-..+.++.|+.++ .|++++++|++...++++++..
T Consensus 2 IgfIG~-G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~--~DiVil~v~d~~i~~v~~~l~~ 77 (153)
T d2i76a2 2 LNFVGT-GTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEKHPEL--NGVVFVIVPDRYIKTVANHLNL 77 (153)
T ss_dssp CEEESC-CHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC-----CEEECSCTTTHHHHHTTTCC
T ss_pred EEEEeC-cHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhhhhcc--CcEEEEeccchhhhHHHhhhcc
Confidence 578999 9999998888765 555433455543100 1 1122345678887776 8999999999999988877643
Q ss_pred cCCCEEEEecCCCCh
Q psy8894 110 AEMPLIVCITEGIPQ 124 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~e 124 (306)
.+ +.++-++++.+.
T Consensus 78 ~~-~ivi~~s~~~~~ 91 (153)
T d2i76a2 78 GD-AVLVHCSGFLSS 91 (153)
T ss_dssp SS-CCEEECCSSSCG
T ss_pred cc-eeeeecccchhh
Confidence 33 333434555543
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.84 E-value=0.033 Score=48.96 Aligned_cols=92 Identities=10% Similarity=0.052 Sum_probs=58.0
Q ss_pred cCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeec-------cCCHHhhhhcCCCcEEEEecCc
Q psy8894 27 LTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPV-------FNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 27 ~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~-------y~sl~el~~~~~iDlavi~vp~ 97 (306)
+++.++|.|.|++|-.|+.+.+.|++.|+++++.-+.+.... .....+. ...+.++.+ ++|.++-+...
T Consensus 12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~Vih~a~~ 89 (363)
T d2c5aa1 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAAD 89 (363)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhh--cCCeEeecccc
Confidence 456788999999999999999999999999875433322111 1111111 112333333 48988765411
Q ss_pred hh-------------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 98 PG-------------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 98 ~~-------------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.. ...+++.|.++|++.++..++
T Consensus 90 ~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS 131 (363)
T d2c5aa1 90 MGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 131 (363)
T ss_dssp CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred cccccccccccccccccccchhhHHHHhHHhhCccccccccc
Confidence 11 344678888999998876554
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.83 E-value=0.0043 Score=51.46 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~- 104 (306)
+-++|+|+|+ |+.|+...+.+..+|++++ ..+|..... ...++.-+.+++++... .|++++.+|-.. ...++
T Consensus 48 ~gktvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~l~~ll~~--sD~i~~~~plt~~T~~li~ 123 (193)
T d1mx3a1 48 RGETLGIIGL-GRVGQAVALRAKAFGFNVL-FYDPYLSDGVERALGLQRVSTLQDLLFH--SDCVTLHCGLNEHNHHLIN 123 (193)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCTTHHHHHTCEECSSHHHHHHH--CSEEEECCCCCTTCTTSBS
T ss_pred eCceEEEecc-ccccccceeeeecccccee-eccCcccccchhhhccccccchhhcccc--CCEEEEeecccccchhhhh
Confidence 3579999999 9999999999999999986 567754212 23366667789999887 899999988532 33332
Q ss_pred -HHHHHcCCCEEEE
Q psy8894 105 -HEALDAEMPLIVC 117 (306)
Q Consensus 105 -~e~~~~Gi~~vvi 117 (306)
+......-..++|
T Consensus 124 ~~~l~~mk~~a~lI 137 (193)
T d1mx3a1 124 DFTVKQMRQGAFLV 137 (193)
T ss_dssp HHHHTTSCTTEEEE
T ss_pred HHHHhccCCCCeEE
Confidence 2233444555554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=95.58 E-value=0.064 Score=45.16 Aligned_cols=92 Identities=17% Similarity=0.122 Sum_probs=56.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----------eecCeecc----CCHHhhhhc-CCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----------THLDLPVF----NTVKEARDA-TGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----------~i~Gip~y----~sl~el~~~-~~iDlavi 93 (306)
+.+||.|+|++|..|+.+.+.|++.|+++++.+.+..... .-.++.+. .+.+++... .+.+.++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~ 81 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS 81 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence 4577999999999999999999999999875554322100 01122222 122222211 24788777
Q ss_pred ecCch-------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 94 YVPPP-------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 94 ~vp~~-------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+.++. .....++.|.+.+....+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss 115 (312)
T d1qyda_ 82 ALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE 115 (312)
T ss_dssp CCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSC
T ss_pred hhhhcccccchhhhhHHHHHHHHhcCCcEEEEee
Confidence 65443 4566778888876555555543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.46 E-value=0.041 Score=44.65 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=58.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCCCceecCee-ccCCHHhhhhc--CCCcEEEEecCch------
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKGGKTHLDLP-VFNTVKEARDA--TGAEATVIYVPPP------ 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~g~~i~Gip-~y~sl~el~~~--~~iDlavi~vp~~------ 98 (306)
|++|.|.|+||-.|+...+.|.+.|+ +++ .+.++.. .+..-+. .+.++.++.+. ..+|.++.++...
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~-~~~r~~~-~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~~~~~~~ 79 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI-APARKAL-AEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGTTIKEAGS 79 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE-CCBSSCC-CCCTTEECCBSCHHHHGGGCCSCCSEEEECCCCCHHHHSS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE-EEeCCch-hhcccccccccchhhhhhccccchheeeeeeeeecccccc
Confidence 78999999999999999999999876 454 4333321 1111122 23345554432 2479998875221
Q ss_pred ----------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 ----------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 ----------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
....+++.|.+.+++.++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss 111 (212)
T d2a35a1 80 EEAFRAVDFDLPLAVGKRALEMGARHYLVVSA 111 (212)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccccchhhhhhhcccccccccccccccccc
Confidence 2345778888899998887665
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.016 Score=47.50 Aligned_cols=84 Identities=14% Similarity=0.104 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHH--H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAI--H 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~--~ 105 (306)
+.++|+|+|. |+.|+...+.+..+|++++ ..+|... .......-+.+++++... .|++++++|- +....++ +
T Consensus 43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~-~~~~~~~~~~~l~ell~~--sDii~i~~plt~~T~~li~~~ 117 (188)
T d1sc6a1 43 RGKKLGIIGY-GHIGTQLGILAESLGMYVY-FYDIENK-LPLGNATQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAK 117 (188)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSSCC-CCCTTCEECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHH
T ss_pred cceEEEEeec-ccchhhhhhhcccccceEe-ecccccc-chhhhhhhhhhHHHHHhh--ccceeecccCCcchhhhccHH
Confidence 4589999999 9999999999999999976 5666531 233444556789999887 8999999884 3333333 3
Q ss_pred HHHHcCCCEEEE
Q psy8894 106 EALDAEMPLIVC 117 (306)
Q Consensus 106 e~~~~Gi~~vvi 117 (306)
.....+-..++|
T Consensus 118 ~l~~mk~~a~lI 129 (188)
T d1sc6a1 118 EISLMKPGSLLI 129 (188)
T ss_dssp HHHHSCTTEEEE
T ss_pred HHhhCCCCCEEE
Confidence 333445555554
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.011 Score=42.76 Aligned_cols=89 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
.++|+|+|+ |+.|....+.|.+.|.++. ..|.+.. .+ ..+++.+. ... .+.+.. ...+
T Consensus 5 ~K~v~ViGl-G~sG~s~a~~L~~~g~~v~-~~D~~~~-~~--------~~~~~~~~--~~~--~~~~~~--~~~~----- 62 (93)
T d2jfga1 5 GKNVVIIGL-GLTGLSCVDFFLARGVTPR-VMDTRMT-PP--------GLDKLPEA--VER--HTGSLN--DEWL----- 62 (93)
T ss_dssp TCCEEEECC-SHHHHHHHHHHHHTTCCCE-EEESSSS-CT--------TGGGSCTT--SCE--EESBCC--HHHH-----
T ss_pred CCEEEEEeE-CHHHHHHHHHHHHCCCEEE-EeeCCcC-ch--------hHHHHhhc--cce--eecccc--hhhh-----
Confidence 468999999 9999988999999999865 5554421 00 01122211 222 222211 1122
Q ss_pred cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 110 AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.++..++ .|+|++.... ++ +.|+++|+.|+|
T Consensus 63 ~~~d~vi-~SPGi~~~~~--~~-~~a~~~gi~iiG 93 (93)
T d2jfga1 63 MAADLIV-ASPGIALAHP--SL-SAAADAGIEIVG 93 (93)
T ss_dssp HHCSEEE-ECTTSCTTSH--HH-HHHHHTTCEEEC
T ss_pred ccCCEEE-ECCCCCCCCH--HH-HHHHHcCCCeEC
Confidence 2456554 6999987652 22 357899999987
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.18 E-value=0.039 Score=45.22 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCcee-------------------------cCeeccCCHHhhhhc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTH-------------------------LDLPVFNTVKEARDA 85 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i-------------------------~Gip~y~sl~el~~~ 85 (306)
++|+|+|+ |..|....-.|.+.|++++ ++|.+. +.+ ..+....++.+....
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~-g~D~n~--~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 76 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVI-GVDVSS--TKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD 76 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEE-EECSCH--HHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEE-EEeCCH--HHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhh
Confidence 47999999 9999888888888899987 666542 110 123455667776554
Q ss_pred CCCcEEEEecCch
Q psy8894 86 TGAEATVIYVPPP 98 (306)
Q Consensus 86 ~~iDlavi~vp~~ 98 (306)
.|++++|+|..
T Consensus 77 --~d~i~i~VpTP 87 (202)
T d1mv8a2 77 --SDVSFICVGTP 87 (202)
T ss_dssp --CSEEEECCCCC
T ss_pred --CCEEEEecCcc
Confidence 89999999863
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=95.13 E-value=0.015 Score=46.43 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=62.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc----eecCee--ccCCHHhhhhcCCCcEEEEecCch---h
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK----THLDLP--VFNTVKEARDATGAEATVIYVPPP---G 99 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~----~i~Gip--~y~sl~el~~~~~iDlavi~vp~~---~ 99 (306)
+.++|+|+|+ |.+|+...++|.+.|++.+...|+..... ...|.. .|.++.+...+ .|++|.+|+.. .
T Consensus 23 ~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~--~Divi~atss~~~ii 99 (159)
T d1gpja2 23 HDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLAR--SDVVVSATAAPHPVI 99 (159)
T ss_dssp TTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHT--CSEEEECCSSSSCCB
T ss_pred ccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhcc--CCEEEEecCCCCccc
Confidence 5689999999 99999999999999998666888864110 112333 45566666555 99999998764 3
Q ss_pred HHHHHHHHHHcC--CCEEEEecCCCC
Q psy8894 100 AAKAIHEALDAE--MPLIVCITEGIP 123 (306)
Q Consensus 100 ~~~~~~e~~~~G--i~~vvi~t~Gf~ 123 (306)
..+.++...+.. -+..+++--+.|
T Consensus 100 ~~~~i~~~~~~r~~~~~~~iiDlavP 125 (159)
T d1gpja2 100 HVDDVREALRKRDRRSPILIIDIANP 125 (159)
T ss_dssp CHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred cHhhhHHHHHhcccCCCeEEEeecCC
Confidence 467777777642 233444555554
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=95.10 E-value=0.024 Score=45.33 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=63.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc-e----------ecCeeccCCHHhhhhc-CCCcEEEEecCc-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK-T----------HLDLPVFNTVKEARDA-TGAEATVIYVPP- 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~-~----------i~Gip~y~sl~el~~~-~~iDlavi~vp~- 97 (306)
++|+|||. |+||....++|.+.||++. ..|++.... + ........+.+++... ...+.+.+++++
T Consensus 2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T d1pgja2 2 MDVGVVGL-GVMGANLALNIAEKGFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (178)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEEee-hHHHHHHHHHHHHCCCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCc
Confidence 57999999 9999999999999999975 666643100 0 1123344455555432 125666666555
Q ss_pred hhHHHHHHHHHHcCC-C-EEEEecCCCChhHHHHHHHHHHHhcCCeEEc
Q psy8894 98 PGAAKAIHEALDAEM-P-LIVCITEGIPQLDMVKVKHRLIRQSKSRLIG 144 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi-~-~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiG 144 (306)
.....++......-. . .++..++.. .++..++.+ ..++.++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~iii~~st~~-~~~~~~~~~-~l~~~~~~~ld 126 (178)
T d1pgja2 80 AATDSTIEQLKKVFEKGDILVDTGNAH-FKDQGRRAQ-QLEAAGLRFLG 126 (178)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEECCCCC-HHHHHHHHH-HHHTTTCEEEE
T ss_pred chhhhhhhhhhhhccccceecccCccc-hhHHHHHHH-HHhhcceeEec
Confidence 444556666555332 2 333344443 334444443 34677776663
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.016 Score=49.99 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=58.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec-----------Cch
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV-----------PPP 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v-----------p~~ 98 (306)
.++|.|.|++|-.|+.+.+.|++.|+.++...+.+. ..+.-...+.++.....+|.++.+. ++.
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~-----~~~~~~~~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~ 76 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-----LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPA 76 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-----CCTTCHHHHHHHHHHHCCSEEEECCCCCCCHHHHHHCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh-----ccccCHHHHHHHHhhcCCCEEEEcchhccccccchhhHH
Confidence 368999999999999999999999998764444332 1223334455665544589888753 111
Q ss_pred --------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 99 --------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 99 --------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.+..+++.|.+.+++.++..++
T Consensus 77 ~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS 106 (315)
T d1e6ua_ 77 DFIYQNMMIESNIIHAAHQNDVNKLLFLGS 106 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 1234567888899998776655
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.70 E-value=0.087 Score=39.84 Aligned_cols=107 Identities=15% Similarity=0.153 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC--CC--ceecCeecc-C------CHHhhhhcCCCcEEEEecCchh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK--GG--KTHLDLPVF-N------TVKEARDATGAEATVIYVPPPG 99 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~--~g--~~i~Gip~y-~------sl~el~~~~~iDlavi~vp~~~ 99 (306)
++|+|+|+ |+.|+...+.|.+.|++++ .|+.+. .. .+..|..++ . .+.++.- .+.|.++.+++.+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~-vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i-~~a~~vv~~t~~d~ 77 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIV-LIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGI-EDADMYIAVTGKEE 77 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTT-TTCSEEEECCSCHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcc-eecCChhhhhhhhhhhhhhhccCcccchhhhhhcCh-hhhhhhcccCCcHH
Confidence 47999999 9999999999999999976 665542 10 011244432 1 1444432 24899988888775
Q ss_pred HHHH-HHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCC-eEEccCC
Q psy8894 100 AAKA-IHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKS-RLIGPNC 147 (306)
Q Consensus 100 ~~~~-~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi-~iiGPNc 147 (306)
.--. ...+.+.|++.++....- .+.. +..++.|+ .++-|.-
T Consensus 78 ~N~~~~~~~k~~~~~~iI~~~~~---~~~~----~~l~~~G~d~vi~p~~ 120 (132)
T d1lssa_ 78 VNLMSSLLAKSYGINKTIARISE---IEYK----DVFERLGVDVVVSPEL 120 (132)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSS---TTHH----HHHHHTTCSEEECHHH
T ss_pred HHHHHHHHHHHcCCceEEEEecC---HHHH----HHHHHCCCCEEECHHH
Confidence 4332 334445788876654332 1212 23467787 6676653
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.027 Score=43.06 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCC-CCChHH---------HHHHHHcCCeEEEeeCCCCCC--c--eecCeecc------CCHHhhhhcCCC
Q psy8894 29 SKSKVICQGFTG-KQGTFH---------SKQAIEYGTKVVGGVSPGKGG--K--THLDLPVF------NTVKEARDATGA 88 (306)
Q Consensus 29 ~~~~VaVvGasg-~~G~~~---------~~~l~~~g~~vv~~VnP~~~g--~--~i~Gip~y------~sl~el~~~~~i 88 (306)
..++|.|+|.-. +.|+.. .+.|++.|++.+ .||++..- . .+.+ +.| .++.++.+...|
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~I-liN~NPeTVstd~d~aD-~lYfeplt~e~v~~Ii~~E~p 80 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETI-MVNCNPETVSTDYDTSD-RLYFEPVTLEDVLEIVRIEKP 80 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEE-EECCCTTSSTTSTTSSS-EEECCCCSHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEE-EEecChhhhhcChhhcC-ceEEccCCHHHHHHHHHHhCC
Confidence 457899999822 456532 467888999987 77776521 0 1111 222 246666555569
Q ss_pred cEEEEecCchhHHHHHHHHHHcCCC
Q psy8894 89 EATVIYVPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 89 Dlavi~vp~~~~~~~~~e~~~~Gi~ 113 (306)
|.+++....+.+..+..++.+.|++
T Consensus 81 ~~ii~~~GGQtalnla~~L~~~gv~ 105 (121)
T d1a9xa4 81 KGVIVQYGGQTPLKLARALEAAGVP 105 (121)
T ss_dssp SEEECSSSTHHHHTTHHHHHHTTCC
T ss_pred CEEEeehhhhhHHHHHHHHHHcCCc
Confidence 9999999999999999999999998
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=94.54 E-value=0.022 Score=46.12 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=64.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--------------------------eecCe--ecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--------------------------THLDL--PVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--------------------------~i~Gi--p~y--~sl~ 80 (306)
+||+|-|+ ||.||...+.+.+.++++++.-+|...-+ .+.|. +++ .+++
T Consensus 1 ~kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~ 79 (169)
T d1dssg1 1 SKIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE 79 (169)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence 47999999 99999999998888999887666654200 12333 333 2577
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++|= +.++|+++.|+-.-...+.++.-++.|+|.|++
T Consensus 80 ~i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkVii 117 (169)
T d1dssg1 80 NIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVII 117 (169)
T ss_dssp GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEE
T ss_pred HCCccccCCCEEEecCceEcCHHHHHHHHhcCCceEee
Confidence 7762 236999999999988888888888889999886
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=94.48 E-value=0.035 Score=48.62 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=102.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCCC-c---eecCeeccC-C-------HHhhhhcCCCcEEEEe
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKGG-K---THLDLPVFN-T-------VKEARDATGAEATVIY 94 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~g-~---~i~Gip~y~-s-------l~el~~~~~iDlavi~ 94 (306)
++.++|+|+|++|..|+.+.+.|++.|+++++.+- |+... . ...|+.+.. + ++++.. ..|.+.+.
T Consensus 1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~--~~~~~~~~ 78 (350)
T d1xgka_ 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFIN 78 (350)
T ss_dssp CCCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEEC
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhc--CCceEEee
Confidence 35689999999999999999999999999876553 33200 0 112443321 2 222332 47887776
Q ss_pred cCch------hHHHHHHHHHHcCCCEEEEecCCCChh-----------HHHHHHHHHHHhcCC--eEEccCCC-----ce
Q psy8894 95 VPPP------GAAKAIHEALDAEMPLIVCITEGIPQL-----------DMVKVKHRLIRQSKS--RLIGPNCP-----GI 150 (306)
Q Consensus 95 vp~~------~~~~~~~e~~~~Gi~~vvi~t~Gf~e~-----------~~~~~~~~~ar~~gi--~iiGPNc~-----Gi 150 (306)
.+.. ....+++.|.+.|++..+++++..... +......+..++.++ .++-|.+. +.
T Consensus 79 ~~~~~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~vr~~~~~~~~~~~ 158 (350)
T d1xgka_ 79 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGIYNNNFTSL 158 (350)
T ss_dssp CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTSSSCEEEEEECEEGGGCBSS
T ss_pred cccccchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCcccchhhhhhHHHHHHHHHhhccCceeeeeceeecccccc
Confidence 5532 345678888889976666666422111 111222234556554 33433321 11
Q ss_pred ecCccccccCCCC----CC--CCCCCEEEEecChhhHHHHHHHHHh---CCCceEEEEecCCCCCCCCCHHHHHHHhhcC
Q psy8894 151 IAPEQCKIGIMPG----HI--HQRGCVGVVSRSGTLTYEAVHQTTQ---VGLGQTLCVGIGGDPFNGTNFIDCLEVFLKD 221 (306)
Q Consensus 151 ~~~~~~~~~~~~~----~~--~~~G~va~vSqSG~~~~~~~~~~~~---~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D 221 (306)
..+.......... .. ...+.+.+++.---++..+...+.. .-.|-.+.++ ++ . +++.|+.+.+.+-
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~--g~--~-~T~~eia~~l~~~ 233 (350)
T d1xgka_ 159 PYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT--FE--T-LSPVQVCAAFSRA 233 (350)
T ss_dssp SCSSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC--SE--E-ECHHHHHHHHHHH
T ss_pred ccccccccccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCeEEEEe--CC--c-CCHHHHHHHHHHH
Confidence 1111000000000 01 1234466665433344444333322 1134444443 35 3 7999999998876
Q ss_pred CCccEEEEEE
Q psy8894 222 PETKGIILIG 231 (306)
Q Consensus 222 ~~t~~I~ly~ 231 (306)
-..++-..++
T Consensus 234 ~G~~v~~~~v 243 (350)
T d1xgka_ 234 LNRRVTYVQV 243 (350)
T ss_dssp HTSCEEEEEC
T ss_pred HCCcceEEEC
Confidence 5555555554
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.46 E-value=0.027 Score=45.88 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH-
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI- 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~- 104 (306)
..+++.|+|. |+.|+...+.+..+|++++ ..+|..... ...+++ +.+++|+..+ .|++++++|-. .+..++
T Consensus 43 ~~k~vgiiG~-G~IG~~va~~~~~fg~~v~-~~d~~~~~~~~~~~~~~-~~~l~ell~~--sDiv~~~~Plt~~T~~lin 117 (184)
T d1ygya1 43 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVV-AYDPYVSPARAAQLGIE-LLSLDDLLAR--ADFISVHLPKTPETAGLID 117 (184)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECTTSCHHHHHHHTCE-ECCHHHHHHH--CSEEEECCCCSTTTTTCBC
T ss_pred cceeeeeccc-cchhHHHHHHhhhccceEE-eecCCCChhHHhhcCce-eccHHHHHhh--CCEEEEcCCCCchhhhhhh
Confidence 4689999999 9999999999999999986 677764111 122333 4679999887 99999998853 333333
Q ss_pred HHHH-HcCCCEEEE
Q psy8894 105 HEAL-DAEMPLIVC 117 (306)
Q Consensus 105 ~e~~-~~Gi~~vvi 117 (306)
++.. ...-.+++|
T Consensus 118 ~~~l~~mk~~a~lI 131 (184)
T d1ygya1 118 KEALAKTKPGVIIV 131 (184)
T ss_dssp HHHHTTSCTTEEEE
T ss_pred HHHHhhhCCCceEE
Confidence 2333 345555443
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=94.34 E-value=0.038 Score=45.46 Aligned_cols=89 Identities=19% Similarity=0.090 Sum_probs=63.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHc-----CCeEEEeeCCCCCC---------ce-------------------------e
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEY-----GTKVVGGVSPGKGG---------KT-------------------------H 70 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~-----g~~vv~~VnP~~~g---------~~-------------------------i 70 (306)
+.+|+|=|+ ||.||.+.|.+.+. .+++++..||...- +. +
T Consensus 2 ~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlkyDSvhG~~~~~v~~~~~~~~~~~~~~~i~ 80 (190)
T d1k3ta1 2 PIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (190)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHHEETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred CeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhhccccccCCCceEEEccCccccccccceEE
Confidence 468999999 99999999987664 35678777775310 00 1
Q ss_pred cCeec-----cCCHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 71 LDLPV-----FNTVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 71 ~Gip~-----y~sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.|.++ ..+.+++|- +.++|+++.|+-.-...+.++.-++.|+|.|++ |.
T Consensus 81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii-SA 135 (190)
T d1k3ta1 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVI-SA 135 (190)
T ss_dssp TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeee-cc
Confidence 12222 234667663 236999999999888888888889999999886 53
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=94.33 E-value=0.023 Score=46.39 Aligned_cols=89 Identities=11% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
+.++++|+|+ |+.|+.+.+.++.+|++++ ..+|..... ...++..+.+++|+.+. .|++++.+|-.. ...++
T Consensus 43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~~l~~--sD~v~~~~plt~~T~~li 118 (188)
T d2naca1 43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLH-YTDRHRLPESVEKELNLTWHATREDMYPV--CDVVTLNCPLHPETEHMI 118 (188)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHGGGTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHGGG--CSEEEECSCCCTTTTTCB
T ss_pred cccceeeccc-cccchhhhhhhhccCceEE-EEeeccccccccccccccccCCHHHHHHh--ccchhhcccccccchhhh
Confidence 4579999999 9999999999999999976 566543112 12356677889999887 999999988533 23333
Q ss_pred -HHHHH-cCCCEEEEecCCC
Q psy8894 105 -HEALD-AEMPLIVCITEGI 122 (306)
Q Consensus 105 -~e~~~-~Gi~~vvi~t~Gf 122 (306)
++..+ ..-..++ +..+-
T Consensus 119 ~~~~l~~mk~ga~l-IN~aR 137 (188)
T d2naca1 119 NDETLKLFKRGAYI-VNTAR 137 (188)
T ss_dssp SHHHHTTSCTTEEE-EECSC
T ss_pred HHHHHHhCCCCCEE-EecCc
Confidence 33343 3444444 34443
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.23 E-value=0.023 Score=46.71 Aligned_cols=88 Identities=10% Similarity=0.154 Sum_probs=59.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCch-hHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPP-GAAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~-~~~~~~ 104 (306)
+-+++.|+|+ |+.|+.+.+.+..+|++++ ..+|..... ...+..-+.+++++... .|++++.+|-. .+..++
T Consensus 46 ~g~tvgIiG~-G~IG~~va~~l~~fg~~v~-~~d~~~~~~~~~~~~~~~~~~~l~~ll~~--sD~v~l~~plt~~T~~li 121 (191)
T d1gdha1 46 DNKTLGIYGF-GSIGQALAKRAQGFDMDID-YFDTHRASSSDEASYQATFHDSLDSLLSV--SQFFSLNAPSTPETRYFF 121 (191)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEE-EECSSCCCHHHHHHHTCEECSSHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred cccceEEeec-ccchHHHHHHHHhhccccc-cccccccccchhhcccccccCCHHHHHhh--CCeEEecCCCCchHhhee
Confidence 3589999999 9999999999999999976 566654211 12244556789999887 99999998863 333333
Q ss_pred -HHHH-HcCCCEEEEecCC
Q psy8894 105 -HEAL-DAEMPLIVCITEG 121 (306)
Q Consensus 105 -~e~~-~~Gi~~vvi~t~G 121 (306)
++.. ...-..+++ ..+
T Consensus 122 ~~~~l~~mk~~a~lI-N~s 139 (191)
T d1gdha1 122 NKATIKSLPQGAIVV-NTA 139 (191)
T ss_dssp SHHHHTTSCTTEEEE-ECS
T ss_pred cHHHhhCcCCccEEE-ecC
Confidence 2333 344444443 443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.23 E-value=0.16 Score=38.01 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC--------Cc-eecCeeccC-CHHhhhhcCCCcEEEEecCchhH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG--------GK-THLDLPVFN-TVKEARDATGAEATVIYVPPPGA 100 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~--------g~-~i~Gip~y~-sl~el~~~~~iDlavi~vp~~~~ 100 (306)
|+++|+|+ |+.|+...+.|.+.|.+++ .|+++.. +. .+.|-...+ .+.++.-+ +.|.++++++.+..
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vv-vid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~-~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVL-AVDINEEKVNAYASYATHAVIANATEENELLSLGIR-NFEYVIVAIGANIQ 77 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCE-EEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGG-GCSEEEECCCSCHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEE-EecCcHHHHHHHHHhCCcceeeecccchhhhccCCc-cccEEEEEcCchHH
Confidence 57899999 9999999999999999966 5655430 00 111211122 24454322 38999999887544
Q ss_pred HHHH-H-HHHHcCCCEEEEec
Q psy8894 101 AKAI-H-EALDAEMPLIVCIT 119 (306)
Q Consensus 101 ~~~~-~-e~~~~Gi~~vvi~t 119 (306)
...+ . .+...+.+.++.-+
T Consensus 78 ~~~~~~~~~~~~~~~~iiar~ 98 (134)
T d2hmva1 78 ASTLTTLLLKELDIPNIWVKA 98 (134)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC
T ss_pred hHHHHHHHHHHcCCCcEEeec
Confidence 4333 3 23345777666544
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.14 E-value=0.048 Score=43.85 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=65.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCCCc--------------------------eecC--eecc--CCH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKGGK--------------------------THLD--LPVF--NTV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~g~--------------------------~i~G--ip~y--~sl 79 (306)
+||+|=|. ||.||.+.+.+++. .+++++.-+|...-+ .+.| ++++ +++
T Consensus 1 tkigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p 79 (166)
T d2b4ro1 1 TKLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP 79 (166)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred CeEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence 58999999 99999999988875 788885555653200 0123 3344 357
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
+++|= +.++|+++-|+-.-...+.+..-+++|++.|++ |.
T Consensus 80 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii-SA 120 (166)
T d2b4ro1 80 SQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIM-SA 120 (166)
T ss_dssp GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE-SS
T ss_pred HHccccccCCCEEEEecccccchhhhhhhhccCCCEEEE-ec
Confidence 77763 236999999999999999999999999999885 54
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=94.10 E-value=0.05 Score=43.84 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=64.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCC-------------Cc------------eecC--eeccC--CHHh
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKG-------------GK------------THLD--LPVFN--TVKE 81 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~-------------g~------------~i~G--ip~y~--sl~e 81 (306)
.||+|=|+ ||.||...|.+.+.++++++.-+|... |. .+.| ++++. +.++
T Consensus 1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~ 79 (168)
T d2g82a1 1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE 79 (168)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence 47999999 999999999888889998865444321 10 1223 34443 5777
Q ss_pred hhhc-CCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 82 ARDA-TGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 82 l~~~-~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++-. .++|+++.|+-.-...+.++..++.|+|.|++
T Consensus 80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkVii 116 (168)
T d2g82a1 80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVII 116 (168)
T ss_dssp CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred CcccccCCceeEeccccccchHHhhhhhccccceeee
Confidence 7742 46999999999999999999999999999886
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.99 E-value=0.1 Score=45.28 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=31.9
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
+-.+|++|.|.|++|-.|+...+.|.+.|+++++..+
T Consensus 12 ~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 12 LPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4456899999999999999999999999999886544
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.03 Score=48.97 Aligned_cols=90 Identities=12% Similarity=0.132 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-------e--cCeec-------cCCHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-------H--LDLPV-------FNTVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-------i--~Gip~-------y~sl~el~~~~~iDlavi~ 94 (306)
+||.|+|++|-.|+...+.|++.|+++++..+....... . .++.. +..+.++....+||+++=+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 479999999999999999999999998755443321111 0 12222 2235555554569998843
Q ss_pred c-----C-----chh--------HHHHHHHHHHcCCCEEEEecC
Q psy8894 95 V-----P-----PPG--------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 v-----p-----~~~--------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
. + +.. +..+++.|.+.+++.++..++
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss 124 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSS 124 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCc
Confidence 2 1 011 224778888899998876554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.57 E-value=0.16 Score=36.80 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=29.2
Q ss_pred cccCCCcEEEEEcCCCCCCh-HHHHHHHHcCCeEEEeeCCC
Q psy8894 25 LRLTSKSKVICQGFTGKQGT-FHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 25 ~~~~~~~~VaVvGasg~~G~-~~~~~l~~~g~~vv~~VnP~ 64 (306)
..+.+.++|-++|. |..|- ...+.|.+.|++|. +-|.+
T Consensus 3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~Vs-GSD~~ 41 (96)
T d1p3da1 3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQIS-GSDIA 41 (96)
T ss_dssp CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEE-EEESC
T ss_pred ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEE-EEeCC
Confidence 45678899999999 77784 44788899999986 55544
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=93.52 E-value=0.035 Score=47.64 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce--------ecCeecc-------CCHHhhhhcCCCcEEEEecC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT--------HLDLPVF-------NTVKEARDATGAEATVIYVP 96 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~--------i~Gip~y-------~sl~el~~~~~iDlavi~vp 96 (306)
||.|.|++|-.|+...+.|++.|+++++..+....+.. ..+++.+ .+++++.+...||.++-+..
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 79999999999999999999999998865333221110 1122222 23455544445899986532
Q ss_pred ch------------------hHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 PP------------------GAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ~~------------------~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.. .+..+++.|.+.+++..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS 123 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS 123 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 11 1234667788888887776665
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.069 Score=42.96 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------Cc------------eecC--eecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------GK------------THLD--LPVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g~------------~i~G--ip~y--~sl~ 80 (306)
.||+|-|+ ||.||.+.|.+.+. .+++++.-+|... |. .+.| ++++ .+.+
T Consensus 2 ikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~ 80 (166)
T d1gado1 2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 80 (166)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChH
Confidence 47999999 99999999988776 7888754333210 10 1233 3444 3578
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
++|= +.++|+++.|+-.-...+-++.-++.|+|.|++
T Consensus 81 ~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkVii 118 (166)
T d1gado1 81 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVM 118 (166)
T ss_dssp GGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEE
T ss_pred HCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEe
Confidence 8872 346999999999999999898889999999886
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=93.28 E-value=0.11 Score=45.66 Aligned_cols=190 Identities=9% Similarity=0.009 Sum_probs=97.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-----ce--------e-------cCeeccCCHHhhhhcCCCcE
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-----KT--------H-------LDLPVFNTVKEARDATGAEA 90 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-----~~--------i-------~Gip~y~sl~el~~~~~iDl 90 (306)
+.+.|.|++|-.|+...+.|++.|+++++..++.... +. . .++.-+.++.++.....||.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 4566999999999999999999999988654421100 00 0 11222333455555445899
Q ss_pred EEEecCch------------------hHHHHHHHHHHcCCC---EEEEecC----C------CChhH-------------
Q psy8894 91 TVIYVPPP------------------GAAKAIHEALDAEMP---LIVCITE----G------IPQLD------------- 126 (306)
Q Consensus 91 avi~vp~~------------------~~~~~~~e~~~~Gi~---~vvi~t~----G------f~e~~------------- 126 (306)
++-+.-.. .+..+++.|.+.+++ .++..++ | +.|++
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK~ 161 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL 161 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHHH
Confidence 98764221 123356677776665 3554443 2 22321
Q ss_pred -HHHHHHHHHHhcCCeEEccCCCceecCcccc------c-cC-------CCCC-CCCCCC-EEEEecChhhHHHHHHHHH
Q psy8894 127 -MVKVKHRLIRQSKSRLIGPNCPGIIAPEQCK------I-GI-------MPGH-IHQRGC-VGVVSRSGTLTYEAVHQTT 189 (306)
Q Consensus 127 -~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~------~-~~-------~~~~-~~~~G~-va~vSqSG~~~~~~~~~~~ 189 (306)
.+++....++++++.++.-....++-|.... + .. .... ..-.|. .-=.....-++.+++. +.
T Consensus 162 ~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~-~~ 240 (357)
T d1db3a_ 162 YAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWM-ML 240 (357)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHH-HH
Confidence 2344445567777654444444444442110 0 00 0000 000111 1112233344444443 33
Q ss_pred hCCCceEEEEecCCCCCCCCCHHHHHHHhhcCCCcc
Q psy8894 190 QVGLGQTLCVGIGGDPFNGTNFIDCLEVFLKDPETK 225 (306)
Q Consensus 190 ~~g~g~s~~vs~Gn~~~~dv~~~d~l~~l~~D~~t~ 225 (306)
+..-+-.+.++.|.. +++.|+++.+.+.-..+
T Consensus 241 ~~~~~~~yni~sg~~----~s~~~~~~~~~~~~g~~ 272 (357)
T d1db3a_ 241 QQEQPEDFVIATGVQ----YSVRQFVEMAAAQLGIK 272 (357)
T ss_dssp SSSSCCCEEECCCCC----EEHHHHHHHHHHTTTEE
T ss_pred hCCCCCeEEECCCCc----eehHHHHHHHHHHhCCc
Confidence 445555666677654 78899998887776543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=93.17 E-value=0.082 Score=41.76 Aligned_cols=84 Identities=17% Similarity=0.063 Sum_probs=51.4
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHc--CCeEEEe-e--------------CCCCCC-------c----ee--cCeeccCC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEY--GTKVVGG-V--------------SPGKGG-------K----TH--LDLPVFNT 78 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~-V--------------nP~~~g-------~----~i--~Gip~y~s 78 (306)
+|++|+|.|+||..|+-.++.++++ .|++++. . +|+... . .. ..+.++..
T Consensus 1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g 80 (150)
T d1r0ka2 1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAG 80 (150)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEES
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccC
Confidence 5899999999999999888888775 6776654 2 232210 0 00 01233332
Q ss_pred H---HhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCC
Q psy8894 79 V---KEARDATGAEATVIYVPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 79 l---~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~ 113 (306)
. .++.. .++|+++..+....-....-.++++|.+
T Consensus 81 ~~~l~~~~~-~~~D~vv~Ai~G~~GL~~tl~ai~~gk~ 117 (150)
T d1r0ka2 81 ADALVEAAM-MGADWTMAAIIGCAGLKATLAAIRKGKT 117 (150)
T ss_dssp HHHHHHHHT-SCCSEEEECCCSGGGHHHHHHHHHTTSE
T ss_pred ccchheecc-cccceeeeecCchhHHHHHHHHHhcCCE
Confidence 2 22222 2477777777777777777777777755
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.12 E-value=0.33 Score=39.82 Aligned_cols=92 Identities=16% Similarity=0.126 Sum_probs=56.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCCCC---CceecCeec----cCCHHhhhhc-CCCcEEEEecCch-
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPGKG---GKTHLDLPV----FNTVKEARDA-TGAEATVIYVPPP- 98 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~~~---g~~i~Gip~----y~sl~el~~~-~~iDlavi~vp~~- 98 (306)
.++|.|.|+||-.|+.+.+.|++.|+ +++.. +.+.. ......+.. +.+++++.+. .++|.++-+....
T Consensus 14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~-~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~~ 92 (232)
T d2bkaa1 14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLI-GRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTR 92 (232)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEE-ESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCCH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEE-ecChhhhcccccceeeeeeecccccccccccccccccccccccccc
Confidence 36899999999999999999988875 56543 32211 111111111 2233333321 2489988764321
Q ss_pred --------------hHHHHHHHHHHcCCCEEEEecCCC
Q psy8894 99 --------------GAAKAIHEALDAEMPLIVCITEGI 122 (306)
Q Consensus 99 --------------~~~~~~~e~~~~Gi~~vvi~t~Gf 122 (306)
....+++.|.+.|++.++..++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~ 130 (232)
T d2bkaa1 93 GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG 130 (232)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred cccchhhhhhhcccccceeeecccccCccccccCCccc
Confidence 334578888899999877656543
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=93.03 E-value=0.085 Score=42.57 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=63.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC-------------C----c--------eecC--eecc--CCHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG-------------G----K--------THLD--LPVF--NTVK 80 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~-------------g----~--------~i~G--ip~y--~sl~ 80 (306)
.||+|=|. ||.||...+.+.+. ++++++.=+|... | + .+.| ++++ .+++
T Consensus 2 ikIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~ 80 (171)
T d3cmco1 2 VKVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (171)
T ss_dssp EEEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH
Confidence 47999999 99999999887765 7887754333210 0 0 1234 3333 3578
Q ss_pred hhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEEecC
Q psy8894 81 EARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 81 el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++|= +.++|+++.|+-.....+-++.-++.|++.|++ |.
T Consensus 81 ~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkVii-Sa 120 (171)
T d3cmco1 81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVII-SA 120 (171)
T ss_dssp GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE-SS
T ss_pred HccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEE-ec
Confidence 8773 346999999999999888888889999999886 53
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=92.98 E-value=0.056 Score=47.93 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSP 63 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP 63 (306)
++|.|.|++|-.|+...+.|++.|++++..++.
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~ 33 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK 33 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 479999999999999999999999986667654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.97 E-value=0.11 Score=43.24 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=55.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-----------ecCeecc-CC------HHhhhhcCCCcEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-----------HLDLPVF-NT------VKEARDATGAEAT 91 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-----------i~Gip~y-~s------l~el~~~~~iDla 91 (306)
.+||.|+|++|..|+...+.|.+.|+++++.+........ ..++.+. .+ +.+... ..|.+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~v 80 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVDVV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhh--hceee
Confidence 4789999999999999999999999998765532221000 1122221 12 222223 37877
Q ss_pred EEecCchh---HHHHHHHHHHcCCCEEEEec
Q psy8894 92 VIYVPPPG---AAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 92 vi~vp~~~---~~~~~~e~~~~Gi~~vvi~t 119 (306)
+....... ....++.+.+.+++.++..+
T Consensus 81 i~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 111 (307)
T d1qyca_ 81 ISTVGSLQIESQVNIIKAIKEVGTVKRFFPS 111 (307)
T ss_dssp EECCCGGGSGGGHHHHHHHHHHCCCSEEECS
T ss_pred eecccccccchhhHHHHHHHHhccccceeee
Confidence 76654433 35577778888887776544
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=92.96 E-value=0.11 Score=41.97 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=62.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc----CCeEEEeeCCCCC-------------C---c---------eecC--eeccC--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY----GTKVVGGVSPGKG-------------G---K---------THLD--LPVFN-- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~----g~~vv~~VnP~~~-------------g---~---------~i~G--ip~y~-- 77 (306)
.||+|-|+ ||.||...|.+.+. .+++++.-+|... | . .+.| ++++.
T Consensus 2 ikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~ 80 (173)
T d1obfo1 2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (173)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred eEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecC
Confidence 57999999 99999999987652 5677754444210 0 0 1233 33443
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++|= +.++|+++.|+-.-...+.++.-++.|+|.|++
T Consensus 81 ~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkVii 121 (173)
T d1obfo1 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVII 121 (173)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEE
Confidence 5788874 346999999999988888888899999999886
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=92.66 E-value=0.12 Score=41.49 Aligned_cols=86 Identities=20% Similarity=0.217 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc-CCeEEEeeCCCCC--------------Cc------------eecC--eecc--CCH
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY-GTKVVGGVSPGKG--------------GK------------THLD--LPVF--NTV 79 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~-g~~vv~~VnP~~~--------------g~------------~i~G--ip~y--~sl 79 (306)
.||+|=|+ ||.||.+.|.+.+. .+++++.-+|... |. .+.| ++++ .+.
T Consensus 2 ikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p 80 (169)
T d1u8fo1 2 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 80 (169)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred cEEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence 48999999 99999999876665 7898866666431 00 0223 2333 257
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++|= +.++|+++.|+-.-...+.++.-++.|++.+++
T Consensus 81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkVii 119 (169)
T d1u8fo1 81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVII 119 (169)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEE
T ss_pred hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEee
Confidence 77773 246999999999988888888778889999886
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=92.53 E-value=0.13 Score=41.30 Aligned_cols=85 Identities=16% Similarity=0.115 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------Cc------------eecC--eecc--CCH
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------GK------------THLD--LPVF--NTV 79 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g~------------~i~G--ip~y--~sl 79 (306)
||+|=|+ ||.||...|.+.+. ++++++.-++... |. .+.| ++++ .++
T Consensus 2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 7999999 99999999987753 5788865343210 10 1234 3333 357
Q ss_pred Hhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 80 KEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 80 ~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++|= +.++|+++.|+-.-...+.++.-++.|+|.|++
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkVii 119 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVII 119 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEE
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEEE
Confidence 88873 236999999999988888899899999999886
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.1 Score=40.11 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCcEEEEEcCCC-CCChH---------HHHHHHHcCCeEEEeeCCCCCCceec-----Ceecc------CCHHhhhhcC
Q psy8894 28 TSKSKVICQGFTG-KQGTF---------HSKQAIEYGTKVVGGVSPGKGGKTHL-----DLPVF------NTVKEARDAT 86 (306)
Q Consensus 28 ~~~~~VaVvGasg-~~G~~---------~~~~l~~~g~~vv~~VnP~~~g~~i~-----Gip~y------~sl~el~~~~ 86 (306)
++.++|.|+|.-+ +.|+. ..+.|++.|++.+ .||++. .++. --++| .++.++.+..
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~i-liN~NP--~TVstd~d~aD~lYfePlt~e~v~~Ii~~E 81 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVI-NVNSNP--ATIMTDPEMADATYIEPIHWEVVRKIIEKE 81 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEE-EECSCT--TCGGGCGGGSSEEECSCCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEE-EecCch--HhhhcChhhcceeeeecCCHHHHHHHHHHh
Confidence 4568999999832 34542 2467888999977 788876 2220 11222 1355555544
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcC
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAE 111 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~G 111 (306)
+||.++.......+..+..++.+.|
T Consensus 82 ~pd~il~~~GGQtalnla~~L~~~g 106 (127)
T d1a9xa3 82 RPDAVLPTMGGQTALNCALELERQG 106 (127)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTT
T ss_pred CcCCeEEEeeeehHhHHHHHHHHcC
Confidence 5777777777777777666665543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=92.33 E-value=0.096 Score=45.39 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce-------ecCee-------ccCCHHhhhhcCCCcEEEE
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT-------HLDLP-------VFNTVKEARDATGAEATVI 93 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~-------i~Gip-------~y~sl~el~~~~~iDlavi 93 (306)
+.++|.|.|++|-.|+...+.|++.|++++ +++..... .. ..++. -+..+.++.+...+|+++.
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~-~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~ 85 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVK-GYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 85 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEE-EEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE-EEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence 358999999999999999999999999976 44332100 10 01222 2223455554445888887
Q ss_pred ecCchh------------------HHHHHHHHHHcCCCEEEEecC
Q psy8894 94 YVPPPG------------------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 94 ~vp~~~------------------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
++.... +..+++.|.+.+.+.++++++
T Consensus 86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s 130 (356)
T d1rkxa_ 86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT 130 (356)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred hhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence 664321 334566777766555554443
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=92.00 E-value=0.67 Score=36.04 Aligned_cols=39 Identities=18% Similarity=-0.049 Sum_probs=27.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
++.+.++|+|+|+ |+.|....-.+...++.-+..+|.+.
T Consensus 3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEecc
Confidence 4567899999998 98887665555555654234777654
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=91.98 E-value=0.67 Score=34.85 Aligned_cols=94 Identities=21% Similarity=0.115 Sum_probs=60.8
Q ss_pred cEEEEEcCCCCCChHHHHHH-HHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecCchhHHHHHHHHHH
Q psy8894 31 SKVICQGFTGKQGTFHSKQA-IEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVPPPGAAKAIHEALD 109 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l-~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~ 109 (306)
++|.+.+... -.+...+.+ .++++++...-++. -...++.+ + +.|.+++......-.++++.+.+
T Consensus 1 MKIl~~~~~~-~e~~~l~~~~~~~~~~v~~~~~~~----------~~~~~~~~-~--~~d~ii~~~~~~~~~~vl~~l~~ 66 (131)
T d1dxya2 1 MKIIAYGARV-DEIQYFKQWAKDTGNTLEYHTEFL----------DENTVEWA-K--GFDGINSLQTTPYAAGVFEKMHA 66 (131)
T ss_dssp CEEEECSCCT-TTHHHHHHHHHHHCCEEEECSSCC----------CTTGGGGG-T--TCSEEEECCSSCBCHHHHHHHHH
T ss_pred CEEEEEecCc-CcHHHHHHHHHHcCeEEEEcCCCC----------CHHHHHHh-c--CCCEEEEecCCCCCHHHHhhccc
Confidence 3677777633 334445444 44688864211111 01123333 3 38988887767777889999999
Q ss_pred cCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 110 AEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 110 ~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
.++|.|...+.|+.--+.+ .|+++|+.+.
T Consensus 67 ~~Lk~I~~~~vG~d~ID~~-----~a~~~gI~V~ 95 (131)
T d1dxya2 67 YGIKFLTIRNVGTDNIDMT-----AMKQYGIRLS 95 (131)
T ss_dssp TTCCEEEESSSCCTTBCHH-----HHHHTTCEEE
T ss_pred CCeEEEEEccccccccccc-----ccccceEEEE
Confidence 9999988888899655533 5899999887
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.18 Score=43.39 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGG 60 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~ 60 (306)
++|.|.|++|-.|+...+.|++.|+++++.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~ 31 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVV 31 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 789999999999999999999999998855
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=91.52 E-value=0.16 Score=40.85 Aligned_cols=86 Identities=16% Similarity=0.030 Sum_probs=59.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc---CCeEEEeeCCCCC-------------C----------c---eecCe--eccC--
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY---GTKVVGGVSPGKG-------------G----------K---THLDL--PVFN-- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~---g~~vv~~VnP~~~-------------g----------~---~i~Gi--p~y~-- 77 (306)
.||+|-|. ||.||.+.|.+++. .+++++.-+|... | + .+.|. +++.
T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~ 79 (172)
T d1rm4a1 1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 79 (172)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence 37999998 99999999987764 3677755444310 0 0 12343 3332
Q ss_pred CHHhhhh-cCCCcEEEEecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 78 TVKEARD-ATGAEATVIYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 78 sl~el~~-~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++++|= +.++|+++.|+-.-...+-++.-++.|+|.|++
T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkVii 120 (172)
T d1rm4a1 80 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLI 120 (172)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEE
T ss_pred ChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEe
Confidence 4777763 235899999998888888888888889988875
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.35 Score=41.53 Aligned_cols=84 Identities=14% Similarity=0.190 Sum_probs=53.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcC-CeEEEeeCCCCCC-ce---------ec-CeeccCCHHh-hhhcCCCcEEEEecCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYG-TKVVGGVSPGKGG-KT---------HL-DLPVFNTVKE-ARDATGAEATVIYVPP 97 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g-~~vv~~VnP~~~g-~~---------i~-Gip~y~sl~e-l~~~~~iDlavi~vp~ 97 (306)
++|.|.|++|-.|+...+.|++.| ++++ .++....+ .. +. ++.-+.++.+ +.. ++|.++-+...
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~-~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~--~~d~Vih~a~~ 77 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVY-GLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK--KCDVVLPLVAI 77 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEE-EEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH--HCSEEEECBCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEE-EEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHh--CCCcccccccc
Confidence 479999999999999999999887 5666 44332211 11 11 2333334444 333 49998875432
Q ss_pred h------------------hHHHHHHHHHHcCCCEEEE
Q psy8894 98 P------------------GAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 98 ~------------------~~~~~~~e~~~~Gi~~vvi 117 (306)
. .+..+++.|.+.+++.+++
T Consensus 78 ~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ 115 (342)
T d2blla1 78 ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP 115 (342)
T ss_dssp CCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccccCCcccccccccccccccccccccccccccc
Confidence 1 1445778888889987664
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=91.28 E-value=0.26 Score=42.08 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=69.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEe-------eCCCCCC-ceecCe------eccCCH--------------H
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGG-------VSPGKGG-KTHLDL------PVFNTV--------------K 80 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~-------VnP~~~g-~~i~Gi------p~y~sl--------------~ 80 (306)
+.++|+|.|+ |+.|....+.|.+.|.++++. .||+..- +++..+ .-..++ +
T Consensus 35 ~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (255)
T d1bgva1 35 VGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGE 113 (255)
T ss_dssp TTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechh
Confidence 4579999998 999999999999999998865 3444210 000000 001111 1
Q ss_pred hhhhcCCCcEEEEe-cCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEcc----CCCceecC
Q psy8894 81 EARDATGAEATVIY-VPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGP----NCPGIIAP 153 (306)
Q Consensus 81 el~~~~~iDlavi~-vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGP----Nc~Gi~~~ 153 (306)
++.. .++|+.+-| +...-..+.++...+.|+|.|+=.+-+....+..+ .+.++.|+.++ | |+-|++..
T Consensus 114 ~~~~-~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~---~ll~~~gI~vv-PD~laNaGGVivS 186 (255)
T d1bgva1 114 KPWG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALR---FLMQQPNMVVA-PSKAVNAGGVLVS 186 (255)
T ss_dssp CGGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHH---HHHHCTTCEEE-CHHHHTTHHHHHH
T ss_pred hccc-ccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHH---HHHHhcCCEEe-hHhhhcCCceeee
Confidence 1211 258888765 33345577888888999997663333332222222 23467787765 5 44566543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=91.27 E-value=0.36 Score=35.31 Aligned_cols=79 Identities=9% Similarity=-0.002 Sum_probs=48.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceec------Cee----ccCCHHhhhhcCCCcEEEEecCc
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHL------DLP----VFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~------Gip----~y~sl~el~~~~~iDlavi~vp~ 97 (306)
.+.++|.|+|. |+.|..-.+.|++.|.+++ .++|... +++. ++. -|. -+++. +.++++.++..
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~-v~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~dl~---~~~lv~~at~d 82 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGARLT-VNALTFI-PQFTVWANEGMLTLVEGPFD-ETLLD---SCWLAIAATDD 82 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBEEE-EEESSCC-HHHHHHHTTTSCEEEESSCC-GGGGT---TCSEEEECCSC
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCeEE-EEeccCC-hHHHHHHhcCCceeeccCCC-HHHhC---CCcEEeecCCC
Confidence 34689999999 8877777888999999865 5666542 2111 111 121 23333 26777777655
Q ss_pred hhH-HHHHHHHHHcCCC
Q psy8894 98 PGA-AKAIHEALDAEMP 113 (306)
Q Consensus 98 ~~~-~~~~~e~~~~Gi~ 113 (306)
+.. ..+.++|.+.|+.
T Consensus 83 ~~~n~~i~~~a~~~~il 99 (113)
T d1pjqa1 83 DTVNQRVSDAAESRRIF 99 (113)
T ss_dssp HHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 544 4555666666654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=91.23 E-value=0.28 Score=42.49 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC-CCCC------------Cce---e-cCeeccCCHHhhhhcCCCcEEE
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS-PGKG------------GKT---H-LDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn-P~~~------------g~~---i-~Gip~y~sl~el~~~~~iDlav 92 (306)
-++|.|.|++|-.|+...+.|++.|+++++.+. ++.. ... + .++.-..++.++.. ++|.++
T Consensus 11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~~v~ 88 (342)
T d1y1pa1 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGVA 88 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEEE
T ss_pred cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cchhhh
Confidence 479999999999999999999999999887663 1100 000 1 11222223444443 378776
Q ss_pred EecCc---------------hhHHHHHHHHHHc-CCCEEEEecC
Q psy8894 93 IYVPP---------------PGAAKAIHEALDA-EMPLIVCITE 120 (306)
Q Consensus 93 i~vp~---------------~~~~~~~~e~~~~-Gi~~vvi~t~ 120 (306)
-+... ..+..+++.|.+. +++.++..++
T Consensus 89 ~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS 132 (342)
T d1y1pa1 89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS 132 (342)
T ss_dssp ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred hhcccccccccccccccchhhhHHHHHHhhhccccccccccccc
Confidence 54322 1234567777775 7998886665
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=91.22 E-value=0.057 Score=45.08 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=43.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEec
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYV 95 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~v 95 (306)
+||.|.|+||-.|+...+.|.+.|++++ +++.+. -+ +.=+.+++++.....+|+++-+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi-~~~r~~--~D---~~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVI-PTDVQD--LD---ITNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEE-EECTTT--CC---TTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-Eeechh--cc---CCCHHHHHHHHHHcCCCEEEeec
Confidence 6799999999999999999999999987 666653 11 22233456665544689988664
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.94 E-value=0.18 Score=42.98 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
++|.|.|++|-.|+.+.+.|++.|+++++..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~ 31 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLV 31 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEE
Confidence 5899999999999999999999999987554
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=89.82 E-value=0.067 Score=44.81 Aligned_cols=86 Identities=13% Similarity=0.056 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEEEEecC--------------
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEATVIYVP-------------- 96 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDlavi~vp-------------- 96 (306)
++|.|.|++|-.|+...+.|.+.|..++...+.+. ...++.=...++++.+...||++|-+..
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~---~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~ 77 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE---FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELA 77 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSS---SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCCcc---ccCcCCCHHHHHHHHHHcCCCEEEEecccccccccccCcccc
Confidence 47999999999999999988887765432333221 1112222233555555445899987542
Q ss_pred ----chhHHHHHHHHHHcCCCEEEEecC
Q psy8894 97 ----PPGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 97 ----~~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
......+++.|.+.+++.+.+ ++
T Consensus 78 ~~~n~~~~~~l~~~~~~~~~~~~~~-ss 104 (298)
T d1n2sa_ 78 QLLNATSVEAIAKAANETGAWVVHY-ST 104 (298)
T ss_dssp HHHHTHHHHHHHHHHTTTTCEEEEE-EE
T ss_pred ccccccccccchhhhhccccccccc-cc
Confidence 222344566666778776554 43
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.77 E-value=0.3 Score=42.30 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=55.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---------ecCeeccC-------CHHhhhhcCCCcEEEEe
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---------HLDLPVFN-------TVKEARDATGAEATVIY 94 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---------i~Gip~y~-------sl~el~~~~~iDlavi~ 94 (306)
+.|.|.|++|=.|+...+.|++.|+++++..+....... -.+++.+. +++++....+||+++-+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 458899999999999999999999998754333221010 01222221 24444444469999854
Q ss_pred cCc---h-------h--------HHHHHHHHHHcCCCEEEEecC
Q psy8894 95 VPP---P-------G--------AAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 95 vp~---~-------~--------~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
... . . ...+++.|.+.+++.++..++
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS 125 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS 125 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence 321 1 1 124567788899998877665
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=89.29 E-value=0.34 Score=43.84 Aligned_cols=87 Identities=14% Similarity=0.183 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC--CCCceecCeeccCC--HHhhhhcCCCcEEEE-ecCchhHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG--KGGKTHLDLPVFNT--VKEARDATGAEATVI-YVPPPGAAKA 103 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~--~~g~~i~Gip~y~s--l~el~~~~~iDlavi-~vp~~~~~~~ 103 (306)
+.+.|.+.|+ |.-|+...+.|.+.|.++++.+|-. ..|+.+.|+|++++ +.|+... ..+++.+ +.-+......
T Consensus 37 ~~~~~~l~g~-~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~g~pv~s~~~~~~~~~~-~~~~~~v~~~~~~~~~~~ 114 (395)
T d2py6a1 37 NATRLVILGT-KGFGAHLMNVRHERPCEVIAAVDDFRYHSGELYYGLPIISTDRFTELATH-DRDLVALNTCRYDGPKRF 114 (395)
T ss_dssp GGCEEEEECS-SSTHHHHHSCSSSCSSEEEEEECTTTTTSCCEETTEEEECHHHHHHHHHT-CTTEEEEECCCSHHHHHH
T ss_pred CCceEEEEcC-chhHHHHHHHHHHCCceEEEEecCchhhcCceecceEeecHHHhhhhhhc-cCcEEEEEeccccchhhH
Confidence 3457999999 9999999999999999999999853 24578999999973 4455433 3554444 4434444443
Q ss_pred H-HHHHHcCCCEEEE
Q psy8894 104 I-HEALDAEMPLIVC 117 (306)
Q Consensus 104 ~-~e~~~~Gi~~vvi 117 (306)
. ..|...|++.+..
T Consensus 115 ~~~~~~~~~~~~~~~ 129 (395)
T d2py6a1 115 FDQICRTHGIPHLNF 129 (395)
T ss_dssp HHHHHHHTTCCEEEH
T ss_pred HHHHHHhcCCcccch
Confidence 3 5566789988664
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=89.19 E-value=0.58 Score=40.32 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHcCCe
Q psy8894 30 KSKVICQGFTGKQGTFHSKQAIEYGTK 56 (306)
Q Consensus 30 ~~~VaVvGasg~~G~~~~~~l~~~g~~ 56 (306)
.++|.|.|+||-.|+...+.|++.|++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~ 28 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPD 28 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTT
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCC
Confidence 478999999999999999999988875
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=89.12 E-value=1.2 Score=33.62 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=41.3
Q ss_pred CCcEEEEecCchhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 87 GAEATVIYVPPPGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 87 ~iDlavi~vp~~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
+.|.+++........++++.+.+.|+|.|...+.|+..-|.+ .|+++|+.+.
T Consensus 45 ~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID~~-----aa~~~gI~V~ 96 (134)
T d1j4aa2 45 GADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMA-----KAKELGFQIT 96 (134)
T ss_dssp TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHH-----HHHHTTCEEE
T ss_pred CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccCHH-----HHHhCCeEEE
Confidence 389877766666678889999999999998888898655533 5789999887
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=88.66 E-value=0.37 Score=40.75 Aligned_cols=74 Identities=19% Similarity=0.223 Sum_probs=51.5
Q ss_pred cCeeccCCHHhhhhcCCCcEEEEecCc-hhHHHHHHHHHHc-CCCEEEEecCCCChhHHHHHHHHHHHhcCCeEEccCC
Q psy8894 71 LDLPVFNTVKEARDATGAEATVIYVPP-PGAAKAIHEALDA-EMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLIGPNC 147 (306)
Q Consensus 71 ~Gip~y~sl~el~~~~~iDlavi~vp~-~~~~~~~~e~~~~-Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~iiGPNc 147 (306)
.|+.+..|..|+.+. .|++++++|. +.+.+++++..+. .-..+|+-++-.+.....++.+ .+++.+++++++-.
T Consensus 127 ~Gv~v~~d~~Eav~~--ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e-~l~~kgi~vi~~hp 202 (242)
T d2b0ja2 127 VGLKVTSDDREAVEG--ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK-DLGREDLNITSYHP 202 (242)
T ss_dssp GTCEEESCHHHHHTT--CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH-HTTCTTSEEEECBC
T ss_pred CCCEEECCHHHHHhc--CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH-hcccCCCEEECCCc
Confidence 688999999999876 9999999986 5578899888875 3445554334444444444433 34677888886553
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.57 E-value=2.3 Score=32.44 Aligned_cols=33 Identities=18% Similarity=-0.023 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCC
Q psy8894 32 KVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPG 64 (306)
Q Consensus 32 ~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~ 64 (306)
||+|+||+|+.|+...-.+...+. .-+..+|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence 799999999999888766666665 333366654
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=88.51 E-value=0.46 Score=38.89 Aligned_cols=112 Identities=12% Similarity=0.148 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc---eecCeeccCCHHhhhhcCCCcEEEEecCchh-HHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK---THLDLPVFNTVKEARDATGAEATVIYVPPPG-AAKAI 104 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~---~i~Gip~y~sl~el~~~~~iDlavi~vp~~~-~~~~~ 104 (306)
+-++|+|.|+ |+.|+...+.|.+.|.+++ .++++...- ...|.+..+ .+++... ++|+.+-|.-... ..+.
T Consensus 26 ~gk~v~IqG~-G~VG~~~A~~L~~~Gakvv-v~d~d~~~~~~~~~~g~~~~~-~~~~~~~-~~DI~iPcA~~~~I~~~~- 100 (201)
T d1c1da1 26 DGLTVLVQGL-GAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAVA-LEDVLST-PCDVFAPCAMGGVITTEV- 100 (201)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCHHHHHHHHHTTCEECC-GGGGGGC-CCSEEEECSCSCCBCHHH-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEE-EecchHHHHHHHHhhcccccC-ccccccc-cceeeecccccccccHHH-
Confidence 4589999998 9999999999999999976 555543100 123444443 5666553 5898887643332 2333
Q ss_pred HHHHHcCCCEEEEecCCC-ChhHHHHHHHHHHHhcCCeEEccC----CCceec
Q psy8894 105 HEALDAEMPLIVCITEGI-PQLDMVKVKHRLIRQSKSRLIGPN----CPGIIA 152 (306)
Q Consensus 105 ~e~~~~Gi~~vvi~t~Gf-~e~~~~~~~~~~ar~~gi~iiGPN----c~Gi~~ 152 (306)
+-+.+.+.|+=.+-+. +.++.. ++.+++|+.+ -|. +-|++.
T Consensus 101 --a~~i~ak~i~e~AN~p~~~~~~~----~~L~~rgI~~-iPD~laNAGGVi~ 146 (201)
T d1c1da1 101 --ARTLDCSVVAGAANNVIADEAAS----DILHARGILY-APDFVANAGGAIH 146 (201)
T ss_dssp --HHHCCCSEECCSCTTCBCSHHHH----HHHHHTTCEE-CCHHHHTTHHHHH
T ss_pred --HhhhhhheeeccCCCCcchhhHH----HHhcccceEE-EehhhhccchHHH
Confidence 3345677544222221 222222 2457888755 464 345553
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.48 Score=36.93 Aligned_cols=90 Identities=17% Similarity=0.089 Sum_probs=57.4
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCee---cc--CCHHhhhh------cCCCcEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLP---VF--NTVKEARD------ATGAEAT 91 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip---~y--~sl~el~~------~~~iDla 91 (306)
.+.+-.+|+|+|+ |.+|....+.++..|.+.|..++++....+ -.|.. .+ .+..+..+ ...+|++
T Consensus 23 ~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv 101 (171)
T d1pl8a2 23 GVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT 101 (171)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred CCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence 4455678999998 989988888888889853336665431011 12321 11 23333221 1358999
Q ss_pred EEecCchhHHHHHHHHHHcCCCEEE
Q psy8894 92 VIYVPPPGAAKAIHEALDAEMPLIV 116 (306)
Q Consensus 92 vi~vp~~~~~~~~~e~~~~Gi~~vv 116 (306)
+.+++.+.+.+..-.+++.|=+.++
T Consensus 102 id~~G~~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 102 IECTGAEASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred EeccCCchhHHHHHHHhcCCCEEEE
Confidence 9999988888887788777765443
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.36 E-value=0.3 Score=38.64 Aligned_cols=85 Identities=11% Similarity=0.008 Sum_probs=53.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHc--CC--eEEEeeCCCCC-----Cce------------ecCeeccCCHHhhh---
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEY--GT--KVVGGVSPGKG-----GKT------------HLDLPVFNTVKEAR--- 83 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~--g~--~vv~~VnP~~~-----g~~------------i~Gip~y~sl~el~--- 83 (306)
++.-+|+++|. |+.|+..++.+++. ++ ++++..+-+.. +-. ....+. .+++++.
T Consensus 2 ~k~i~I~l~G~-G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (168)
T d1ebfa1 2 TKVVNVAVIGA-GVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKT-LPLDDLIAHL 79 (168)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBC-CCHHHHHHHH
T ss_pred CCEEEEEEEeC-CHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhccccc-ccHHHHHHHh
Confidence 35678999999 99999998888764 34 35554443210 000 001111 1122222
Q ss_pred -hcCCCcEEEEecCchhHHHHHHHHHHcCCCE
Q psy8894 84 -DATGAEATVIYVPPPGAAKAIHEALDAEMPL 114 (306)
Q Consensus 84 -~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~ 114 (306)
....+|++++++..+...+...+++++|++.
T Consensus 80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hV 111 (168)
T d1ebfa1 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISI 111 (168)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEE
T ss_pred ccCCCceEEEEecCChHHHHHHHHHHHcCCeE
Confidence 1234788888998888888889999999984
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.98 E-value=0.28 Score=43.20 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
+||.|.|++|-.|+...+.|++.|++++ ++
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~-~i 31 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVC-IV 31 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEE-EE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEE-EE
Confidence 6899999999999999999999999986 44
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=87.84 E-value=0.78 Score=35.35 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC-eEEEeeCCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT-KVVGGVSPGK 65 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~-~vv~~VnP~~ 65 (306)
.+.++|+|+|+ |+.|......+...|. .-+..+|.+.
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 34679999998 9999877666666553 2334777653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.83 E-value=0.27 Score=39.79 Aligned_cols=32 Identities=28% Similarity=0.195 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
++|+|+|+ |.||+-....+...|++++ .+|++
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~-l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVV-LVDQT 36 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSC
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEE-EEECC
Confidence 78999999 9999988888888999976 66665
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=87.74 E-value=0.81 Score=35.31 Aligned_cols=86 Identities=13% Similarity=0.016 Sum_probs=49.3
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCe---ecc----CCHHhhh----h--cCCCc
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDL---PVF----NTVKEAR----D--ATGAE 89 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gi---p~y----~sl~el~----~--~~~iD 89 (306)
.+....+|+|+|+ |.+|....+.++..|.+++ .++++....+ -.|. -.+ .+..+.. + ...+|
T Consensus 23 ~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi-~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D 100 (170)
T d1e3ja2 23 GVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVV-CTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 100 (170)
T ss_dssp TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCEEEEEcc-cccchhhHhhHhhhccccc-ccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence 4556678999996 8899888888888899876 5665431011 0111 011 1222221 1 12477
Q ss_pred EEEEecCchhHHHHHHHHHHcCCC
Q psy8894 90 ATVIYVPPPGAAKAIHEALDAEMP 113 (306)
Q Consensus 90 lavi~vp~~~~~~~~~e~~~~Gi~ 113 (306)
+++.++..+.+.+..-++++.+=+
T Consensus 101 ~vid~~g~~~~~~~a~~~~~~~G~ 124 (170)
T d1e3ja2 101 VTIDCSGNEKCITIGINITRTGGT 124 (170)
T ss_dssp EEEECSCCHHHHHHHHHHSCTTCE
T ss_pred eeeecCCChHHHHHHHHHHhcCCc
Confidence 777777776655555555555433
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=87.68 E-value=0.36 Score=38.53 Aligned_cols=84 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhh---hhcCCCcEEEEecCc----hhHHHHHHHHHHcCCCEEEEec
Q psy8894 47 SKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEA---RDATGAEATVIYVPP----PGAAKAIHEALDAEMPLIVCIT 119 (306)
Q Consensus 47 ~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el---~~~~~iDlavi~vp~----~~~~~~~~e~~~~Gi~~vvi~t 119 (306)
...|...||++++. . .+.+.+++ ..+.++|++.+++-. +.+.++++++-+.|.+.+.++-
T Consensus 58 a~~l~~~G~eVi~l---g----------~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~Viv 124 (168)
T d7reqa2 58 ATAYADLGFDVDVG---P----------LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITV 124 (168)
T ss_dssp HHHHHHTTCEEEEC---C----------TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHhCCcceecC---C----------CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEE
Confidence 34667779997631 1 12222222 223479999998543 4556677777788866565566
Q ss_pred CCC-ChhHHHHHHHHHHHhcCC-eEEccCCC
Q psy8894 120 EGI-PQLDMVKVKHRLIRQSKS-RLIGPNCP 148 (306)
Q Consensus 120 ~Gf-~e~~~~~~~~~~ar~~gi-~iiGPNc~ 148 (306)
.|. ++++.++ .++.|+ ++.||.+.
T Consensus 125 GG~ip~~d~~~-----l~~~Gv~~iF~pgt~ 150 (168)
T d7reqa2 125 GGVIPEQDFDE-----LRKDGAVEIYTPGTV 150 (168)
T ss_dssp EESCCGGGHHH-----HHHHTEEEEECTTCC
T ss_pred eCCCCHHHHHH-----HHhCCCCEEECcCCC
Confidence 674 5555433 356787 78899864
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=87.47 E-value=0.5 Score=40.31 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEE-----EeeC-CCCCCc--------eecCeeccC-------CHHhhhhcCCCc
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVV-----GGVS-PGKGGK--------THLDLPVFN-------TVKEARDATGAE 89 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv-----~~Vn-P~~~g~--------~i~Gip~y~-------sl~el~~~~~iD 89 (306)
+||.|.|++|-.|+...+.|++.|+++. ..+| ....+. ....+..+. .+.... ..+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~d 78 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLAREL--RGVD 78 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHT--TTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccc--cccc
Confidence 4799999999999999999999877532 1222 111000 011222221 122222 2488
Q ss_pred EEEEecCc------------------hhHHHHHHHHHHcCCCEEEEecC
Q psy8894 90 ATVIYVPP------------------PGAAKAIHEALDAEMPLIVCITE 120 (306)
Q Consensus 90 lavi~vp~------------------~~~~~~~~e~~~~Gi~~vvi~t~ 120 (306)
.++.+... ..+..+++.|.+.+++.++..++
T Consensus 79 ~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss 127 (322)
T d1r6da_ 79 AIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST 127 (322)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred eEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeec
Confidence 88866422 12356788999999998776554
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=87.43 E-value=0.07 Score=42.41 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=45.4
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCC-ce---ecCeeccCCHHhhhhcCCCcEEEEecCc
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGG-KT---HLDLPVFNTVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g-~~---i~Gip~y~sl~el~~~~~iDlavi~vp~ 97 (306)
....++.++|.|+|+ |-.++.+...|.+.|++-+..+|.+... +. ..+... +.+... .+.|++|=+||.
T Consensus 11 ~~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~---~~~~~~-~~~DliINaTpi 83 (167)
T d1npya1 11 KYHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY---INSLEN-QQADILVNVTSI 83 (167)
T ss_dssp HTTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE---ESCCTT-CCCSEEEECSST
T ss_pred HcCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh---hhcccc-cchhhheecccc
Confidence 334556789999999 9999999999999999755688876410 11 122222 222222 248999888883
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.13 E-value=4.7 Score=31.11 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCe
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTK 56 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~ 56 (306)
+.++|.|.|++|..|+...+.|++.|.+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~ 29 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDK 29 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCc
Confidence 3578999999999999999999998865
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.92 E-value=0.62 Score=39.98 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
+||.|.|++|-.|+...+.|++.|+++++..+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 68999999999999999999999999875544
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=86.14 E-value=0.97 Score=35.25 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHc--CCeEEEee---------------CCCCCC--ce-------------ecCeeccC-
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEY--GTKVVGGV---------------SPGKGG--KT-------------HLDLPVFN- 77 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~--g~~vv~~V---------------nP~~~g--~~-------------i~Gip~y~- 77 (306)
++|+|.|++|..|+-..+.++++ .|++++.. +|+... ++ ..+++++.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g 81 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG 81 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence 58999999999999888888876 57766542 232210 00 01233332
Q ss_pred --CHHhhhhcCCCcEEEEecCchhHHHHHHHHHHcCCCE
Q psy8894 78 --TVKEARDATGAEATVIYVPPPGAAKAIHEALDAEMPL 114 (306)
Q Consensus 78 --sl~el~~~~~iDlavi~vp~~~~~~~~~e~~~~Gi~~ 114 (306)
++.++....++|+++..+....-..-.-++++.|.+.
T Consensus 82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~i 120 (151)
T d1q0qa2 82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 120 (151)
T ss_dssp HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEE
T ss_pred hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeE
Confidence 2333333335788888888877777788888888653
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.04 E-value=0.13 Score=40.98 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=30.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.+-.+|+|+|+ |-.|....+.++..|.+.|..++++.
T Consensus 24 ~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 24 DIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCCCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh
Confidence 4556778999998 88888888888888986344777653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=85.66 E-value=2.2 Score=35.49 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcE---EEEecCchhHHHHHH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEA---TVIYVPPPGAAKAIH 105 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDl---avi~vp~~~~~~~~~ 105 (306)
+-+++.|.|+++.+|+...+.|.+.|++++ .++.+. +... .+ .+++.+. ..++ ..+.+..+.+.++++
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~-i~~r~~--~~l~--~~---~~~~~~~-~~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVY-TCSRNE--KELD--EC---LEIWREK-GLNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEE-EEESCH--HHHH--HH---HHHHHHT-TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHHH--HH---HHHHHhc-CCCceEEEeecCCHHHHHHHHH
Confidence 568899999999999999999999999965 454432 1110 01 2222221 1222 124466666677777
Q ss_pred HHHHc
Q psy8894 106 EALDA 110 (306)
Q Consensus 106 e~~~~ 110 (306)
++.+.
T Consensus 76 ~~~~~ 80 (258)
T d1ae1a_ 76 TVAHV 80 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=85.27 E-value=4.6 Score=35.31 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=91.0
Q ss_pred ccCCCcEEEEEcCCCCC----ChHHHHHHHHc-CCeEEEeeCCCCCCce----e----cCeeccCCHHhhhhcCCCcEEE
Q psy8894 26 RLTSKSKVICQGFTGKQ----GTFHSKQAIEY-GTKVVGGVSPGKGGKT----H----LDLPVFNTVKEARDATGAEATV 92 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~----G~~~~~~l~~~-g~~vv~~VnP~~~g~~----i----~Gip~y~sl~el~~~~~iDlav 92 (306)
++...++.+|. +-|.. ||.+.-.++.. .+.++ .|+.+..|+. + .++|+|.|++++.+. ++|..|
T Consensus 6 m~~p~~~a~Il-~~g~~~~~~gKTa~gLlRy~~~~~v~-~V~~~~aG~~~~~~l~g~~~~IPIv~s~~~A~~~-g~~~li 82 (338)
T d2g0ta1 6 LYQPGTPAAIV-AWGQLGTAHAKTTYGLLRHSRLFKPV-CVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLI 82 (338)
T ss_dssp HSCTTEEEEEE-CTTTTTSGGGHHHHHHHHHCSSEEEE-EEESSCTTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEE
T ss_pred hcCCCCCEEEE-eCCCcCCCCchHhhhHHhccCCCeEE-EEECCCCCCchhhhcCCCCCCCCEeCCHHHHHhc-CCCEEE
Confidence 34444555555 43544 44444344332 34555 4444444542 2 279999999999875 799999
Q ss_pred EecCc------hhHHHHHHHHHHcCCCEEEEecCCCCh--hHHHHHHHHHHHhcCCeEEccCCCceecCccccccCCCCC
Q psy8894 93 IYVPP------PGAAKAIHEALDAEMPLIVCITEGIPQ--LDMVKVKHRLIRQSKSRLIGPNCPGIIAPEQCKIGIMPGH 164 (306)
Q Consensus 93 i~vp~------~~~~~~~~e~~~~Gi~~vvi~t~Gf~e--~~~~~~~~~~ar~~gi~iiGPNc~Gi~~~~~~~~~~~~~~ 164 (306)
+-+.+ +...+.+.+|+++|.. |++ |.=+ .+..++ .++|+++|.+++-=. .|.. ...++...
T Consensus 83 iGvAp~GG~lp~~w~~~i~~Al~~Gl~-Ivs---GLH~~L~ddpel-~~~A~~~g~~i~DvR-----~p~~-~l~v~~G~ 151 (338)
T d2g0ta1 83 IGVSNPGGYLEEQIATLVKKALSLGMD-VIS---GLHFKISQQTEF-LKIAHENGTRIIDIR-----IPPL-ELDVLRGG 151 (338)
T ss_dssp ECCCSCCHHHHHHHHHHHHHHHHTTCE-EEE---CCCC--CCHHHH-HHHHHHHTCCEEESS-----SCCS-SCCCCCSG
T ss_pred EEecccCCcCCHHHHHHHHHHHHcCCe-EEe---cchhhhccCHHH-HHHHHhCCCEEEEee-----CCCC-ccchhhcc
Confidence 86543 5667799999999998 343 4321 122233 247889997776311 1111 01111111
Q ss_pred -CCCCC-CEEEEe---cChhhHHH--HHHHHHhCCCceEEEEecCC
Q psy8894 165 -IHQRG-CVGVVS---RSGTLTYE--AVHQTTQVGLGQTLCVGIGG 203 (306)
Q Consensus 165 -~~~~G-~va~vS---qSG~~~~~--~~~~~~~~g~g~s~~vs~Gn 203 (306)
.-..+ .|.+|- ..|=+.++ +...++++|+- +.|+.||.
T Consensus 152 ~~~~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~-a~fiaTGQ 196 (338)
T d2g0ta1 152 IYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIK-AGFLATGQ 196 (338)
T ss_dssp GGGCCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCC-EEEEECSH
T ss_pred hhccCCcEEEEeccCccccHHHHHHHHHHHHHhCCCC-eeEEEcCC
Confidence 11223 355554 45555544 34667788874 55777764
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.44 E-value=1.8 Score=35.57 Aligned_cols=110 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce-ecCeeccC----------CHHhhhhcCCCcEEEEecCc
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT-HLDLPVFN----------TVKEARDATGAEATVIYVPP 97 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~-i~Gip~y~----------sl~el~~~~~iDlavi~vp~ 97 (306)
+..+|+|+|+ |-.|..+.++|...|..-+..||+...... +.-...|. .+.+-..+..||+-|...+.
T Consensus 29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 3579999999 989999999999999986678998763221 11111222 12222222357877777766
Q ss_pred hhHHHHHHHHHHcCCCEEEEecCCCChhHHHHHHHHHHHhcCCeEE
Q psy8894 98 PGAAKAIHEALDAEMPLIVCITEGIPQLDMVKVKHRLIRQSKSRLI 143 (306)
Q Consensus 98 ~~~~~~~~e~~~~Gi~~vvi~t~Gf~e~~~~~~~~~~ar~~gi~ii 143 (306)
............ ....++..+.. .....+..++|+++++.++
T Consensus 108 ~~~~~~~~~~~~-~~divid~~d~---~~~~~~in~~~~~~~ip~i 149 (247)
T d1jw9b_ 108 LLDDAELAALIA-EHDLVLDCTDN---VAVRNQLNAGCFAAKVPLV 149 (247)
T ss_dssp CCCHHHHHHHHH-TSSEEEECCSS---HHHHHHHHHHHHHHTCCEE
T ss_pred hhhhcccccccc-ccceeeeccch---hhhhhhHHHHHHHhCCCcc
Confidence 555555544443 34544432322 2233444567888887666
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.60 E-value=0.85 Score=33.54 Aligned_cols=81 Identities=10% Similarity=0.054 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCc--eecCee---ccCCHHhh---hhcCCCcEEEEecCchhH
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGK--THLDLP---VFNTVKEA---RDATGAEATVIYVPPPGA 100 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~--~i~Gip---~y~sl~el---~~~~~iDlavi~vp~~~~ 100 (306)
..++|+|+|. |-.|+.......+.|++++ ..+|..... .+...- -|.+.+.+ .....+|++..= -+.+
T Consensus 10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~-v~d~~~~~PA~~va~~~i~~~~~d~~~l~~~~~~~~~DviT~E--~EnI 85 (111)
T d1kjqa2 10 AATRVMLLGS-GELGKEVAIECQRLGVEVI-AVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPE--IEAI 85 (111)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTTCEEE-EEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEEC--SSCS
T ss_pred CCCEEEEEeC-CHHHHHHHHHHHHCCCEEE-EEcCCCCCchhhcCCeEEECCCCCHHHHHHHHHhhCCceEEEE--ecCc
Confidence 4568999998 8888888888899999975 677764211 122211 24443333 222236766431 1222
Q ss_pred -HHHHHHHHHcCCC
Q psy8894 101 -AKAIHEALDAEMP 113 (306)
Q Consensus 101 -~~~~~e~~~~Gi~ 113 (306)
.++++++.+.|++
T Consensus 86 ~~~~L~~le~~g~~ 99 (111)
T d1kjqa2 86 ATDMLIQLEEEGLN 99 (111)
T ss_dssp CHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHCCCe
Confidence 4556666666655
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.47 E-value=0.88 Score=38.76 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=26.9
Q ss_pred cEE-EEEcCCCCCChHHHHHHHHcCCeEEEee
Q psy8894 31 SKV-ICQGFTGKQGTFHSKQAIEYGTKVVGGV 61 (306)
Q Consensus 31 ~~V-aVvGasg~~G~~~~~~l~~~g~~vv~~V 61 (306)
++| .|.|++|-.|+...+.|++.|+++++..
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~ 32 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIV 32 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEE
Confidence 578 5889999999999999999999988553
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=82.80 E-value=1.4 Score=34.63 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=31.0
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCC
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGK 65 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~ 65 (306)
.+.+-.+|+|+|+ |-.|-...+.++..|.+.|..++++.
T Consensus 25 ~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 25 KVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccch
Confidence 4566689999998 88898889999989987555677664
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.29 E-value=1.2 Score=34.34 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=53.3
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCce---ecCee-c--c----CCHHhhhh---cCCCcEEE
Q psy8894 26 RLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKT---HLDLP-V--F----NTVKEARD---ATGAEATV 92 (306)
Q Consensus 26 ~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~---i~Gip-~--y----~sl~el~~---~~~iDlav 92 (306)
.+.+-.+|+|.|+ |-.|....+.++..|.+.|..++++....+ ..|.. + | ..+.+... ...+|+++
T Consensus 25 ~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vi 103 (176)
T d2fzwa2 25 KLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSF 103 (176)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEee
Confidence 4666788999999 567888888888889875556665531111 11211 1 1 11222211 12467777
Q ss_pred EecCchhHHHHHHHHHHcCCCEEEE
Q psy8894 93 IYVPPPGAAKAIHEALDAEMPLIVC 117 (306)
Q Consensus 93 i~vp~~~~~~~~~e~~~~Gi~~vvi 117 (306)
+++....+.+...++.+.|-..+++
T Consensus 104 d~~G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 104 ECIGNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp ECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred ecCCCHHHHHHHHHhhcCCceeEEE
Confidence 7777666666666666666554443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.21 E-value=3.3 Score=31.53 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHcCC--eEEEeeCCC
Q psy8894 28 TSKSKVICQGFTGKQGTFHSKQAIEYGT--KVVGGVSPG 64 (306)
Q Consensus 28 ~~~~~VaVvGasg~~G~~~~~~l~~~g~--~vv~~VnP~ 64 (306)
++.+||+|+|+ |+.|......+...+. +++ .+|.+
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~-L~Di~ 40 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIV-LIDAN 40 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEE-EECSS
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEE-EEeec
Confidence 45679999998 9999877655555544 454 77765
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=81.71 E-value=0.77 Score=38.38 Aligned_cols=89 Identities=10% Similarity=0.154 Sum_probs=56.5
Q ss_pred ccccCCCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCCCCCceecCeeccCCHHhhhhcCCCcEE---EEecCchhH
Q psy8894 24 NLRLTSKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPGKGGKTHLDLPVFNTVKEARDATGAEAT---VIYVPPPGA 100 (306)
Q Consensus 24 ~~~~~~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~~~g~~i~Gip~y~sl~el~~~~~iDla---vi~vp~~~~ 100 (306)
++.|. -|++.|.|+++.+|+...+.|.+.|++++ .++.+. +.. -...+++.++.+.++. .+.+.++.+
T Consensus 4 ~m~l~-gK~alITGas~GIG~aia~~la~~Ga~V~-i~~r~~--~~~-----~~~~~~~~~~~g~~~~~~~~Dv~~~~~v 74 (260)
T d1h5qa_ 4 TISFV-NKTIIVTGGNRGIGLAFTRAVAAAGANVA-VIYRSA--ADA-----VEVTEKVGKEFGVKTKAYQCDVSNTDIV 74 (260)
T ss_dssp EECCT-TEEEEEETTTSHHHHHHHHHHHHTTEEEE-EEESSC--TTH-----HHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred cccCC-CCEEEEeCCCCHHHHHHHHHHHHCCCEEE-EEECCH--HHH-----HHHHHHHHHHhCCceEEEEccCCCHHHH
Confidence 33444 47899999999999999999999999965 555443 111 1112333222123332 245778888
Q ss_pred HHHHHHHHHc--CCCEEEEecCCC
Q psy8894 101 AKAIHEALDA--EMPLIVCITEGI 122 (306)
Q Consensus 101 ~~~~~e~~~~--Gi~~vvi~t~Gf 122 (306)
.++++++.+. ++..+++ ..|+
T Consensus 75 ~~~~~~~~~~~g~iDilVn-nAg~ 97 (260)
T d1h5qa_ 75 TKTIQQIDADLGPISGLIA-NAGV 97 (260)
T ss_dssp HHHHHHHHHHSCSEEEEEE-CCCC
T ss_pred HHHHHHHHHHhCCCcEecc-cccc
Confidence 8899888875 4775554 5554
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.91 E-value=0.89 Score=38.53 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
+++.|.|+||-.|+.+.+.|++.|++|++...
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r 33 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR 33 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEEC
Confidence 67889999999999999999999999886554
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=80.63 E-value=0.92 Score=38.02 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
+.++|+|.|+ |+.|+...+.|.+.|.++++.-|
T Consensus 30 ~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 30 EGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeec
Confidence 4689999999 99999999999999999886543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.54 E-value=0.38 Score=36.95 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHcCCeEEEeeCCC
Q psy8894 31 SKVICQGFTGKQGTFHSKQAIEYGTKVVGGVSPG 64 (306)
Q Consensus 31 ~~VaVvGasg~~G~~~~~~l~~~g~~vv~~VnP~ 64 (306)
+||+|+|.+|.+|+...+.|.+.|++++ ..+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~-l~~R~ 33 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIV-VGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEE-EEESS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence 4799996669999999999999999965 44443
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=80.06 E-value=4.1 Score=33.65 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHcCCeEEEeeC
Q psy8894 29 SKSKVICQGFTGKQGTFHSKQAIEYGTKVVGGVS 62 (306)
Q Consensus 29 ~~~~VaVvGasg~~G~~~~~~l~~~g~~vv~~Vn 62 (306)
+-+.+.|.|+++.+|+...+.|.+.|++++ ..+
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga~V~-~~~ 42 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGASVV-VSD 42 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTCEEE-EEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE-EEE
Confidence 458899999999999999999999999965 444
|