Psyllid ID: psy8895

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Secondary Structure (PSIPRED)
ccccccccEEEEEEEccccEEEEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEccccccccEEEEEEcccEEEEEEEEEEEEccccccccEEEEEEEEcccccEEEEEEccccEEEEEEccccccccccccccccEEEEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccEEcccccEEEEccccccEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEcccccEEEEEEEEEEcccccccccEEEEEEcccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccHHHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEEEEcccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccEEEccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEcccccEEEEEccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccEEEEEccccccEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
vwdlatgklklsltghvgsvRGLTVIRHYHghlssvntislhPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVtqasepqvgtkTVLLESCERIMFVLGTAGFLLSClpslldfgtirpWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFIscqelvpstenqlvpttasNTQIIQQAKAkalpmpkpqwhapwkLYRVISGHLGWVRcvavepgnewfatgsadkIIKVWDLATGKLKLsltghvgsvrgltvsprhpylfscgddrtvkcwdleynkapvqpgsmdsesgifsmtfdnsgsrlittEADKTVKlykeddsateeshpvitgshdcTIRLwdlaagkslctltnhkksvrsvalhptlymfasaspdnikqwkcpegkfiqnlpghnaiinsicvnnegvlvsgadngtmcfwdwrtgynfqRLQVRcvsgfpkpsVFFFFLAFSYLNRVGVF
Flexible Loop (DISEMBL)
vwdlatgklklsltghvgsVRGLTVIRHYHGHLssvntislhPTIDVLITagrdstarvWDVRTKANVYTLTGHTNTiasvvtqasepqVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHvgsvrgltvsprhpyLFSCGDDRTVKCWDLEYNKApvqpgsmdseSGIFSMTFDNSGSRLITTEADKTVKLYKeddsateeshpvitgshDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Low Complexity Region (SEG)
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Disordered region (IsUnstruct)
***LATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE*QLV********II*******L*MPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK**************************************************VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVG**
Disordered Region (DISOPRED)
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Disordered Region (DISEMBL)
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK************ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Disordered Region (DISPRO)
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q922V4	513	Pleiotropic regulator 1 O	yes	N/A	0.613	0.573	0.568	2e-97
O43660	514	Pleiotropic regulator 1 O	yes	N/A	0.615	0.573	0.568	2e-97
Q9WUC8	514	Pleiotropic regulator 1 O	yes	N/A	0.615	0.573	0.568	3e-97
Q2KID6	513	Pleiotropic regulator 1 O	yes	N/A	0.592	0.553	0.571	1e-96
O13615	473	Pre-mRNA-splicing factor	yes	N/A	0.557	0.564	0.520	8e-85
Q4WT34	453	Pre-mRNA-splicing factor	yes	N/A	0.530	0.560	0.538	7e-84
Q5BE22	452	Pre-mRNA-splicing factor	yes	N/A	0.557	0.590	0.520	1e-82
P0CS48	473	Pre-mRNA-splicing factor	yes	N/A	0.517	0.524	0.539	9e-81
P0CS49	473	Pre-mRNA-splicing factor	N/A	N/A	0.517	0.524	0.535	4e-80
Q6C709	441	Pre-mRNA-splicing factor	yes	N/A	0.538	0.585	0.494	3e-73

>sp|Q922V4|PLRG1_MOUSE Pleiotropic regulator 1 OS=Mus musculus GN=Plrg1 PE=2 SV=1

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/315 (56%), Positives = 212/315 (67%), Gaps = 21/315 (6%)

Query: 173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
           P+  N ++ T   NT+       KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct: 159 PTAMNSIMET--GNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 216

Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct: 217 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 276

Query: 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------- 339
           NK  V        S ++ +    +   L+T   D T +++     A+             
Sbjct: 277 NK--VIRHYHGHLSAVYGLDLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVAT 334

Query: 340 ---EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI 395
              + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP LY FAS SPDNI
Sbjct: 335 VRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLLYTFASGSPDNI 394

Query: 396 KQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCV 455
           KQWK P+G FIQNL GHNAIIN++ VN +GVLVSGADNGTM  WDWRTGYNFQR+     
Sbjct: 395 KQWKFPDGGFIQNLSGHNAIINTLAVNADGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQ 454

Query: 456 SGFPKPSVFFFFLAF 470
            G        F  AF
Sbjct: 455 PGSLDSESGIFACAF 469

Necessary for spliceosome assembly and for pre-mRNA splicing.
Mus musculus (taxid: 10090)

>sp|O43660|PLRG1_HUMAN Pleiotropic regulator 1 OS=Homo sapiens GN=PLRG1 PE=1 SV=1

 Score =  356 bits (913), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 179/315 (56%), Positives = 212/315 (67%), Gaps = 20/315 (6%)

Query: 173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
           P+  N +V  T +       AK KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct: 159 PTAMNSIVMETGNTKNSALMAK-KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 217

Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct: 218 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 277

Query: 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------- 339
           NK  V        S ++ +    +   L+T   D T +++     A+             
Sbjct: 278 NK--VIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVAT 335

Query: 340 ---EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI 395
              + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNI
Sbjct: 336 VRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNI 395

Query: 396 KQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCV 455
           KQWK P+G FIQNL GHNAIIN++ VN++GVLVSGADNGTM  WDWRTGYNFQR+     
Sbjct: 396 KQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQ 455

Query: 456 SGFPKPSVFFFFLAF 470
            G        F  AF
Sbjct: 456 PGSLDSESGIFACAF 470

Necessary for spliceosome assembly and for pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q9WUC8|PLRG1_RAT Pleiotropic regulator 1 OS=Rattus norvegicus GN=Plrg1 PE=2 SV=1

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/315 (56%), Positives = 212/315 (67%), Gaps = 20/315 (6%)

Query: 173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
           P+  N ++  T SNT+       KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct: 159 PTAMNSMIMET-SNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 217

Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct: 218 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 277

Query: 293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------- 339
           NK  V        S ++ +    +   L+T   D T +++     A+             
Sbjct: 278 NK--VIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVAT 335

Query: 340 ---EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI 395
              + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNI
Sbjct: 336 VRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDNI 395

Query: 396 KQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCV 455
           KQWK P+G FIQNL GHNAIIN++ VN +GVLVSGADNGTM  WDWRTGYNFQR+     
Sbjct: 396 KQWKFPDGGFIQNLSGHNAIINTLAVNTDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQ 455

Query: 456 SGFPKPSVFFFFLAF 470
            G        F  AF
Sbjct: 456 PGSLDSESGIFACAF 470

Necessary for spliceosome assembly and for pre-mRNA splicing.

Rattus norvegicus (taxid: 10116)

>sp|Q2KID6|PLRG1_BOVIN Pleiotropic regulator 1 OS=Bos taurus GN=PLRG1 PE=2 SV=1

 Score =  353 bits (907), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/306 (57%), Positives = 210/306 (68%), Gaps = 22/306 (7%)

Query: 182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADK 241
           + A N+ ++ +   KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+WF TGSAD+
Sbjct: 169 SNAKNSALMAK---KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADR 225

Query: 242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
            IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEYNK  V    
Sbjct: 226 TIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNK--VIRHY 283

Query: 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHP- 344
               S ++ +    +   L+T   D T +++     A+                + + P 
Sbjct: 284 HGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQ 343

Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGK 404
           +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNIKQWK P+G 
Sbjct: 344 IITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGS 403

Query: 405 FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVF 464
           FIQNL GHNAIIN++ VN++GVLVSGADNGTM  WDWRTGYNFQR+      G       
Sbjct: 404 FIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESG 463

Query: 465 FFFLAF 470
            F  AF
Sbjct: 464 IFACAF 469

Necessary for spliceosome assembly and for pre-mRNA splicing.

Bos taurus (taxid: 9913)

>sp|O13615|PRP46_SCHPO Pre-mRNA-splicing factor prp5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp5 PE=1 SV=1

 Score =  314 bits (805), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 149/286 (52%), Positives = 193/286 (67%), Gaps = 19/286 (6%)

Query: 202 KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV 261
           +P+WHAPW L RVISGHLGWVRCV VEPGN+WF TG+ D+ IK+WDLA+G LKL+LTGH+
Sbjct: 146 RPEWHAPWTLMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHI 205

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
            +VRGL VSPRHPYLFSCG+D+ VKCWDLE NK  V        SG++++    +   L+
Sbjct: 206 ATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNK--VIRHYHGHLSGVYALKLHPTLDVLV 263

Query: 322 TTEADKTVKLYKEDDS----------------ATEESHP-VITGSHDCTIRLWDLAAGKS 364
           T   D   +++                     A +E  P V+TGS D TIRLWDLAAGK+
Sbjct: 264 TAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKT 323

Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNE 424
           L TLT+HKK+VR+++LHP  + FAS S DNIK WK PEG F+ N  GHNAI+N++ +N++
Sbjct: 324 LTTLTHHKKTVRALSLHPDEFTFASGSSDNIKHWKFPEGAFMGNFEGHNAIVNTLSINSD 383

Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAF 470
            V+ SGADNG+MCFWDW++G+ +Q LQ     G        F  +F
Sbjct: 384 NVMFSGADNGSMCFWDWKSGHKYQELQSVVQPGSLDSEAGIFASSF 429

Required for both cell cycle progression at G2/M and pre-mRNA splicing. Interacts genetically with the PRP4 kinase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4WT34|PRP46_ASPFU Pre-mRNA-splicing factor prp46 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prp46 PE=3 SV=1

 Score =  311 bits (797), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 147/273 (53%), Positives = 187/273 (68%), Gaps = 19/273 (6%)

Query: 202 KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV 261
           +P WH PWKL RVISGHLGWVR +AVEP NEWFA+G+ D+ IK+W+LATG L+L+LTGH+
Sbjct: 127 RPDWHPPWKLMRVISGHLGWVRSLAVEPNNEWFASGAGDRTIKIWNLATGALRLTLTGHI 186

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
            +VRGL VSPRHPYLFSCG+D+ VKCWDLE NK  V        SG++++        L+
Sbjct: 187 STVRGLAVSPRHPYLFSCGEDKMVKCWDLETNK--VIRHYHGHLSGVYTLALHPRLDLLV 244

Query: 322 TTEADKTVKLYKED----------------DSATEESHP-VITGSHDCTIRLWDLAAGKS 364
           T   D   +++                   D   +E+ P +ITGS D T+RLWDLAAGK+
Sbjct: 245 TGGRDGVARVWDMRTRSNIHVLSGHKGTVADLKCQEADPQIITGSLDATVRLWDLAAGKT 304

Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNE 424
           +  LT+HKK VR++A+HP  + FASAS  +IKQWKCPEG F+QN  GHNA+INS+ VN +
Sbjct: 305 MGVLTHHKKGVRNLAIHPREFTFASASTGSIKQWKCPEGDFMQNFEGHNAVINSLAVNED 364

Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG 457
            VL SG DNG+MCFWDW+TGY FQ +      G
Sbjct: 365 NVLFSGGDNGSMCFWDWKTGYKFQSIDTMAQPG 397

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5BE22|PRP46_EMENI Pre-mRNA-splicing factor prp46 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=prp46 PE=3 SV=1

 Score =  307 bits (786), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 150/288 (52%), Positives = 192/288 (66%), Gaps = 21/288 (7%)

Query: 187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVW 246
           T +IQ  +  A     P+WHAPWKL RVISGHLGWVR +AVEP NEWFA+G+ D+ IK+W
Sbjct: 113 TSLIQ--RPSATRQQPPEWHAPWKLMRVISGHLGWVRSLAVEPNNEWFASGAGDRTIKIW 170

Query: 247 DLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES 306
           +LATG L+L+LTGH+ +VRGL VSPRHPYLFSCG+D+ VKCWDLE NK  V        S
Sbjct: 171 NLATGALRLTLTGHISTVRGLAVSPRHPYLFSCGEDKMVKCWDLETNK--VIRHYHGHLS 228

Query: 307 GIFSMTFDNSGSRLITTEADKTVKLYKED----------------DSATEESHP-VITGS 349
           G++++        L+T   D   +++                   D   +E+ P VITGS
Sbjct: 229 GVYTLALHPRLDLLVTGGRDGVARVWDMRTRSNIHVLSGHTGTVADVQCQEADPQVITGS 288

Query: 350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
            D T+RLWDLAAGK++  LT+HKK +RS+A HP  + FASAS  +IKQWKCP G+F+QN 
Sbjct: 289 LDATVRLWDLAAGKTMGVLTHHKKGIRSLATHPREFTFASASTGSIKQWKCPGGEFMQNF 348

Query: 410 PGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG 457
            GHNAIIN++ VN + VL SG DNG+M FWDW+TGY +Q +      G
Sbjct: 349 EGHNAIINTLSVNEDNVLFSGGDNGSMSFWDWKTGYRYQTIDTTAQPG 396

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|P0CS48|PRP46_CRYNJ Pre-mRNA-splicing factor PRP46 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PRP46 PE=3 SV=1

 Score =  301 bits (770), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 145/269 (53%), Positives = 193/269 (71%), Gaps = 21/269 (7%)

Query: 202 KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV 261
           KP++H  WKL RVISGH+GWVR VA++PGN+WFATG+ D++IK+WDLA+G+LKLSLTGH+
Sbjct: 165 KPEYHPEWKLTRVISGHMGWVRAVAMDPGNQWFATGAGDRVIKIWDLASGELKLSLTGHI 224

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
            ++RGL VS RHPYLFSC +D+ VKCWDLE NK  V        SG++S++   +   L+
Sbjct: 225 STIRGLAVSDRHPYLFSCAEDKMVKCWDLETNK--VIRHYHGHFSGVYSLSVHPTLDVLV 282

Query: 322 TTEADKTVKLYKE----------------DDSATEESHP-VITGSHDCTIRLWDLAAGKS 364
           T   D +V+++                   D  T++S P +I+GS D T+RLWDLAAGK 
Sbjct: 283 TGGRDASVRVWDMRTRANIFTLTGHTSTVGDVKTQDSDPQIISGSMDSTVRLWDLAAGKC 342

Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASP--DNIKQWKCPEGKFIQNLPGHNAIINSICVN 422
           + TLT+HKKSVR++A+HPT Y FASAS   +NIK+WKCPEG F+ N  GH AIIN++ +N
Sbjct: 343 MNTLTHHKKSVRALAIHPTEYSFASASSGGNNIKKWKCPEGIFVNNFVGHEAIINTLSIN 402

Query: 423 NEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
           +E VL SGADNGT+  WD++TG  FQ L+
Sbjct: 403 SENVLFSGADNGTLTLWDYKTGLPFQHLK 431

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS49|PRP46_CRYNB Pre-mRNA-splicing factor PRP46 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PRP46 PE=3 SV=1

 Score =  299 bits (765), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 144/269 (53%), Positives = 193/269 (71%), Gaps = 21/269 (7%)

Query: 202 KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV 261
           KP++H  WKL RVISGH+GWVR VA++PG++WFATG+ D++IK+WDLA+G+LKLSLTGH+
Sbjct: 165 KPEYHPEWKLTRVISGHMGWVRAVAMDPGSQWFATGAGDRVIKIWDLASGELKLSLTGHI 224

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
            ++RGL VS RHPYLFSC +D+ VKCWDLE NK  V        SG++S++   +   L+
Sbjct: 225 STIRGLAVSDRHPYLFSCAEDKMVKCWDLETNK--VIRHYHGHFSGVYSLSVHPTLDVLV 282

Query: 322 TTEADKTVKLYKE----------------DDSATEESHP-VITGSHDCTIRLWDLAAGKS 364
           T   D +V+++                   D  T++S P +I+GS D T+RLWDLAAGK 
Sbjct: 283 TGGRDASVRVWDMRTRANIFTLTGHTSTVGDVKTQDSDPQIISGSMDSTVRLWDLAAGKC 342

Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASP--DNIKQWKCPEGKFIQNLPGHNAIINSICVN 422
           + TLT+HKKSVR++A+HPT Y FASAS   +NIK+WKCPEG F+ N  GH AIIN++ +N
Sbjct: 343 MNTLTHHKKSVRALAIHPTEYSFASASSGGNNIKKWKCPEGIFVNNFVGHEAIINTLSIN 402

Query: 423 NEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
           +E VL SGADNGT+  WD++TG  FQ L+
Sbjct: 403 SENVLFSGADNGTLTLWDYKTGLPFQHLK 431

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q6C709|PRP46_YARLI Pre-mRNA-splicing factor PRP46 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PRP46 PE=3 SV=2

 Score =  276 bits (706), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 137/277 (49%), Positives = 181/277 (65%), Gaps = 19/277 (6%)

Query: 198 LPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           L   KP WHAPW++YRVI+GH GWVR V VEP N+WFATGSADK IK+WDLATGKL+L+L
Sbjct: 111 LTQSKPAWHAPWEIYRVITGHQGWVRSVCVEPENQWFATGSADKTIKIWDLATGKLRLTL 170

Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
           TGH+  VR L VSPRHPY+FS G+D+ VKCWDLE NK  V        S ++S+    + 
Sbjct: 171 TGHIMGVRALGVSPRHPYMFSGGEDKMVKCWDLETNK--VVRHYHGHLSAVYSLDIHPTL 228

Query: 318 SRLITTEADKTVKLY--KEDDSAT--------------EESHP-VITGSHDCTIRLWDLA 360
             L++   D   +++  +  D                 + S P VIT S D T+RLW+L 
Sbjct: 229 DVLVSAGRDAVARVWDIRTRDPVVVLSGHKSTINRVKFQASEPQVITASADETVRLWNLQ 288

Query: 361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSIC 420
           AGK++ TLT+HKKSVR + LHP  + F++AS ++ KQWKCPEG  + N    NAIIN++ 
Sbjct: 289 AGKTMTTLTHHKKSVRGLTLHPEEFTFSTASANSSKQWKCPEGDLVLNYDDQNAIINTLS 348

Query: 421 VNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG 457
           VN + V+ SG DNG++ F+DW+TG+ FQ  Q   + G
Sbjct: 349 VNQDNVMFSGGDNGSIGFYDWKTGHMFQSTQSIPIPG 385

Involved in pre-mRNA splicing and required for cell cycle progression at G2/M.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
170036953	456	pleiotropic regulator 1 [Culex quinquefa	0.615	0.646	0.601	1e-107
157126630	477	striatin, putative [Aedes aegypti] gi|10	0.626	0.628	0.593	1e-106
312377118	379	hypothetical protein AND_11686 [Anophele	0.613	0.775	0.596	1e-105
158294509	461	AGAP005631-PA [Anopheles gambiae str. PE	0.613	0.637	0.596	1e-105
332375320	453	unknown [Dendroctonus ponderosae]	0.682	0.721	0.504	1e-105
91077474	455	PREDICTED: similar to Transport and Golg	0.705	0.742	0.528	1e-104
340730082	457	PREDICTED: pleiotropic regulator 1-like	0.613	0.643	0.597	1e-104
350395961	457	PREDICTED: pleiotropic regulator 1-like	0.613	0.643	0.597	1e-103
242016674	456	Pleiotropic regulator, putative [Pedicul	0.678	0.712	0.496	1e-103
195469864	480	GE16491 [Drosophila yakuba] gi|194187380	0.592	0.591	0.598	1e-103

>gi|170036953|ref|XP_001846325.1| pleiotropic regulator 1 [Culex quinquefasciatus] gi|167879953|gb|EDS43336.1| pleiotropic regulator 1 [Culex quinquefasciatus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 230/319 (72%), Gaps = 24/319 (7%)

Query: 174 STENQLVPTTASNTQ-----IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE 228
           +T+  L+PT+++ +Q      +Q    KA  +PKP+WHAPWKLYRVISGHLGWVRCVAVE
Sbjct: 96  NTQTALLPTSSAGSQNSTSNTVQILPKKAPTIPKPKWHAPWKLYRVISGHLGWVRCVAVE 155

Query: 229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW 288
           PGNEWFATG+AD++IK+WDLA+GKLKLSLTGHV +VRGL VSPRHPYLFSCG+DR VKCW
Sbjct: 156 PGNEWFATGAADRVIKIWDLASGKLKLSLTGHVSTVRGLCVSPRHPYLFSCGEDRQVKCW 215

Query: 289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------- 339
           DLEYNK  V        S +++M+   +   L+T   D T +++     A          
Sbjct: 216 DLEYNK--VIRHYHGHLSAVYTMSLHPTIDVLVTAGRDSTARVWDMRTKANIHTLGGHTN 273

Query: 340 -------EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
                  + ++P VITGSHD T+RLWDLAAGKS+ TLTNHKKSVRS+ LHP+LYMFASAS
Sbjct: 274 TVASVVCQAANPQVITGSHDSTVRLWDLAAGKSMGTLTNHKKSVRSIVLHPSLYMFASAS 333

Query: 392 PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
           PDNIKQW+CPEG FIQNL GHNAI+N++ VN EGVLVSG DNGTM FWDWRTGYNFQR Q
Sbjct: 334 PDNIKQWRCPEGNFIQNLNGHNAIVNAMAVNPEGVLVSGGDNGTMFFWDWRTGYNFQRFQ 393

Query: 452 VRCVSGFPKPSVFFFFLAF 470
                G        F + F
Sbjct: 394 AAVQPGSMDSEAGIFSMTF 412

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126630|ref|XP_001654681.1| striatin, putative [Aedes aegypti] gi|108873204|gb|EAT37429.1| AAEL010588-PA, partial [Aedes aegypti]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 193/325 (59%), Positives = 230/325 (70%), Gaps = 25/325 (7%)

Query: 169 QELVPSTENQLVPTTAS------NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWV 222
           Q+   +T++ L+P  AS      N+  +Q    KA  +PKP+WHAPWKL RVISGHLGWV
Sbjct: 111 QDQGANTQSALLPVGASQSSQNTNSNTVQILPKKAPTIPKPKWHAPWKLCRVISGHLGWV 170

Query: 223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD 282
           RCVAVEPGNEWFATG+AD++IK+WDLA+GKLKLSLTGHV +VRGL VSPRHPYLFSCG+D
Sbjct: 171 RCVAVEPGNEWFATGAADRVIKIWDLASGKLKLSLTGHVSTVRGLCVSPRHPYLFSCGED 230

Query: 283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--- 339
           R VKCWDLEYNK  V        S +++M    +   L+T   D T +++     A    
Sbjct: 231 RQVKCWDLEYNK--VIRHYHGHLSAVYTMALHPTIDVLVTAGRDSTARVWDMRTKANIHT 288

Query: 340 -------------EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY 385
                        + ++P VITGSHD T+RLWDLAAGKS+CTLTNHKKSVRS+ LHP+LY
Sbjct: 289 LGGHTNTVASVVCQAANPQVITGSHDSTVRLWDLAAGKSMCTLTNHKKSVRSIVLHPSLY 348

Query: 386 MFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY 445
           MFASASPDNIKQW+CPEG FIQNL GHN+I+N++ VN EGVLVSG DNGTM FWDWRTGY
Sbjct: 349 MFASASPDNIKQWRCPEGNFIQNLNGHNSIVNTMAVNPEGVLVSGGDNGTMFFWDWRTGY 408

Query: 446 NFQRLQVRCVSGFPKPSVFFFFLAF 470
           NFQR Q     G        F + F
Sbjct: 409 NFQRFQAAVQPGSMDSEAGIFAMTF 433

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377118|gb|EFR24030.1| hypothetical protein AND_11686 [Anopheles darlingi]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/317 (59%), Positives = 226/317 (71%), Gaps = 23/317 (7%)

Query: 171 LVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG 230
           LVP+      P T + +  +Q    KA  +PKP+WHAPWKL RVI+GHLGWVRCVAVEPG
Sbjct: 25  LVPAA----TPATQNTSNAVQILPKKAPTIPKPKWHAPWKLCRVIAGHLGWVRCVAVEPG 80

Query: 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290
           NEWFATG+AD++IK+WDLA+GKLKLSLTGHV +VRGL VSPRHPYLFSCG+DR VKCWDL
Sbjct: 81  NEWFATGAADRVIKIWDLASGKLKLSLTGHVSTVRGLAVSPRHPYLFSCGEDRQVKCWDL 140

Query: 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------ 338
           EYNK  V        S +++M+   +   L+T   D T +++     A            
Sbjct: 141 EYNK--VIRHYHGHLSAVYTMSLHPTIDVLVTAGRDSTARVWDMRTKANIHTLTGHTNTV 198

Query: 339 ----TEESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD 393
               T+ ++P +ITGSHD T+RLWDLAAGKS+CTLTNHKKSVR++ LHP+LYMFASASPD
Sbjct: 199 ASVVTQAANPQIITGSHDSTVRLWDLAAGKSMCTLTNHKKSVRAIVLHPSLYMFASASPD 258

Query: 394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453
           NIKQW+CPEG FIQNL GHN+I+N + VN EGVLVSG DNGTM FWDWRTGYNFQR Q  
Sbjct: 259 NIKQWRCPEGNFIQNLGGHNSIVNCMAVNPEGVLVSGGDNGTMFFWDWRTGYNFQRFQAA 318

Query: 454 CVSGFPKPSVFFFFLAF 470
              G        F + F
Sbjct: 319 VQPGSMDSEAGIFSMVF 335

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294509|ref|XP_315646.3| AGAP005631-PA [Anopheles gambiae str. PEST] gi|157015595|gb|EAA11740.4| AGAP005631-PA [Anopheles gambiae str. PEST]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/317 (59%), Positives = 225/317 (70%), Gaps = 23/317 (7%)

Query: 171 LVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG 230
           LVP+      PT  + +  +Q    KA  +PKP+WHAPWKL RVISGHLGWVRCVAVEPG
Sbjct: 107 LVPAA----TPTPQAASSAVQILPKKAPTIPKPKWHAPWKLCRVISGHLGWVRCVAVEPG 162

Query: 231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL 290
           NEWFATG+AD++IK+WDLA+GKLKLSLTGHV +VR L VSPRHPYLFSCG+DR VKCWDL
Sbjct: 163 NEWFATGAADRVIKIWDLASGKLKLSLTGHVSTVRALAVSPRHPYLFSCGEDRQVKCWDL 222

Query: 291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------ 338
           EYNK  V        S +++M+   +   L+T   D T +++     A            
Sbjct: 223 EYNK--VIRHYHGHLSAVYTMSLHPTIDVLVTAGRDSTARVWDMRTKANIHTLTGHTNTV 280

Query: 339 ----TEESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD 393
               T+ ++P +ITGSHD T+RLWDLAAGKS+CTLTNHKKSVR++ LHP+LYMFASASPD
Sbjct: 281 ASVVTQAANPQIITGSHDSTVRLWDLAAGKSMCTLTNHKKSVRAIVLHPSLYMFASASPD 340

Query: 394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453
           NIKQW+CPEG FIQNL GHN+I+N + VN EGVLVSG DNGTM FWDWRTGYNFQR Q  
Sbjct: 341 NIKQWRCPEGNFIQNLGGHNSIVNCMAVNPEGVLVSGGDNGTMFFWDWRTGYNFQRFQAA 400

Query: 454 CVSGFPKPSVFFFFLAF 470
              G        F + F
Sbjct: 401 VQPGSMDSEAGIFSMTF 417

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375320|gb|AEE62801.1| unknown [Dendroctonus ponderosae]

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/410 (50%), Positives = 246/410 (60%), Gaps = 83/410 (20%)

Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ---------------LVPTTASNT 187
           ++VQRHSVHTLVFRSLKR+HDMF++ Q L+P  + +               LV       
Sbjct: 3   EDVQRHSVHTLVFRSLKRSHDMFLANQGLLPPVDEKAENVRRTVKARDFYGLVFDDVKKM 62

Query: 188 QIIQQAK-AKALPMPKP------------------------------------------- 203
           Q ++  + A+A P P P                                           
Sbjct: 63  QAMKNLREAEAGPNPPPPGTDHQENSINENAVVPYMEAPLATRGQQNNQNQLANIIKKSP 122

Query: 204 -----QWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258
                +WH PWKLYRVI+GHLGWVRCVA+EPGNEWFATG+AD+IIK+WDLA+G+LK+SLT
Sbjct: 123 AMPKPKWHPPWKLYRVIAGHLGWVRCVALEPGNEWFATGAADRIIKIWDLASGQLKVSLT 182

Query: 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS 318
           GHV +VRGL VS RHPYLFSCG+DR VKCWDLEYNK  V        S ++S+    +  
Sbjct: 183 GHVSTVRGLAVSTRHPYLFSCGEDRQVKCWDLEYNK--VIRHYHGHLSAVYSLALHPTID 240

Query: 319 RLITTEADKTVKLYKEDDSAT----------------EESHP-VITGSHDCTIRLWDLAA 361
            L++   D T +++     A                 + S P VITGSHD TIRLWDLAA
Sbjct: 241 VLLSAGRDSTARVWDMRTKANIHTLTGHSHTVAKVIAQASEPQVITGSHDTTIRLWDLAA 300

Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV 421
           GKS+CTLTNHKKSVR +  HPTL MFAS SPDNIKQWKCP+GKFIQNL GHNAIIN + V
Sbjct: 301 GKSICTLTNHKKSVRDLVFHPTLNMFASGSPDNIKQWKCPDGKFIQNLSGHNAIINCLAV 360

Query: 422 NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFS 471
           N E VLVSG DNGT+ FWDWRTGYNFQRLQ     G        F + F 
Sbjct: 361 NAESVLVSGGDNGTLHFWDWRTGYNFQRLQAPVQPGSMDSEAGIFSMTFD 410

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077474|ref|XP_968267.1| PREDICTED: similar to Transport and Golgi organization 4 CG1796-PA [Tribolium castaneum] gi|270002139|gb|EEZ98586.1| hypothetical protein TcasGA2_TC001100 [Tribolium castaneum]

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 243/382 (63%), Gaps = 44/382 (11%)

Query: 131 LQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMF---------------ISCQELVPST 175
           L  + E+  +  + ++   ++ LVF  +K+   M                    +  P+T
Sbjct: 32  LPSVDEKAEMVRKAIKARDLYGLVFDDVKKMQAMKHLREAEAGPNPPPPGTRTDDAAPNT 91

Query: 176 ENQLVPTT---------ASNTQIIQQAKAKALP-MPKPQWHAPWKLYRVISGHLGWVRCV 225
           E  +VP T          +NTQ       K +P MPKP+WHAPWKLYRVI+GHLGWVRCV
Sbjct: 92  EGAVVPYTDTSLMTRSVQNNTQNQLANLMKKVPTMPKPKWHAPWKLYRVIAGHLGWVRCV 151

Query: 226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285
           +VEPGNEWFATG+AD+IIK+WDLA+G+LK+SLTGHV +VRGL VS RHPYLFSCG+DR V
Sbjct: 152 SVEPGNEWFATGAADRIIKIWDLASGQLKVSLTGHVSTVRGLAVSSRHPYLFSCGEDRQV 211

Query: 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------ 339
           KCWDLEYNK  V        S ++S+    +   L+T   D T +++     A       
Sbjct: 212 KCWDLEYNK--VIRHYHGHLSAVYSLALHPTIDVLLTAGRDSTARVWDMRTKANVHTLTG 269

Query: 340 ----------EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFA 388
                     + S P VITGSHD TIRLWDLAAGKS+CTLTNHKKSVR V LHPTL MFA
Sbjct: 270 HTHTVASVVAQASEPQVITGSHDTTIRLWDLAAGKSICTLTNHKKSVRDVILHPTLNMFA 329

Query: 389 SASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448
           S SPDNIKQWKCP+GKFIQNL GHNAI+N + VN EGVLVSG DNGT+ FWDWRTGYNFQ
Sbjct: 330 SGSPDNIKQWKCPDGKFIQNLSGHNAIVNCLAVNPEGVLVSGGDNGTLHFWDWRTGYNFQ 389

Query: 449 RLQVRCVSGFPKPSVFFFFLAF 470
           RLQ     G        F + F
Sbjct: 390 RLQAPVQPGSMDSEAGIFSMIF 411

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340730082|ref|XP_003403317.1| PREDICTED: pleiotropic regulator 1-like [Bombus terrestris]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 222/323 (68%), Gaps = 29/323 (8%)

Query: 173 PSTENQLVPTTASNTQ--------IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRC 224
           P   N +V TT +N+         II Q K  +  M KP+WHAPWKLYRVISGHLGWVRC
Sbjct: 95  PIQNNNMVVTTQTNSGGNSINMSLIIPQKKTPS--MAKPKWHAPWKLYRVISGHLGWVRC 152

Query: 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT 284
            AVEPGNEWFATGSAD++IK+WDLATGKLK+SLTGH+ SVRGL  S RHPYLFSCG+DR 
Sbjct: 153 CAVEPGNEWFATGSADRVIKIWDLATGKLKVSLTGHISSVRGLAFSQRHPYLFSCGEDRQ 212

Query: 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----- 339
           VKCWDLEYNK  V        S ++SM    S   L+T   D T +++     A      
Sbjct: 213 VKCWDLEYNK--VIRHYHGHLSAVYSMALHPSIDVLVTAGRDSTARVWDMRTKANVHTLV 270

Query: 340 -----------EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
                      + + P ++TGSHDCTIRLWDLAAG+S  TLTNHKKS+R+V  HP+LYMF
Sbjct: 271 GHTNTVASVICQTAEPQIVTGSHDCTIRLWDLAAGRSRATLTNHKKSIRAVTFHPSLYMF 330

Query: 388 ASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
           ASASPDNIKQWKCPEGKFIQNL GHNAI+N + VN +GVLVSGADNGTM  WDWRTGYNF
Sbjct: 331 ASASPDNIKQWKCPEGKFIQNLSGHNAIVNCLAVNADGVLVSGADNGTMHLWDWRTGYNF 390

Query: 448 QRLQVRCVSGFPKPSVFFFFLAF 470
           QRLQ     G        F + F
Sbjct: 391 QRLQAPVQPGSMDSEAGVFSITF 413

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350395961|ref|XP_003484391.1| PREDICTED: pleiotropic regulator 1-like [Bombus impatiens]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/323 (59%), Positives = 222/323 (68%), Gaps = 29/323 (8%)

Query: 173 PSTENQLVPTTASNTQ--------IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRC 224
           P   N +V TT +N+         II Q K  +  M KP+WHAPWKLYRVISGHLGWVRC
Sbjct: 95  PIQNNNMVVTTQTNSGGNSVNMSLIIPQKKTPS--MAKPKWHAPWKLYRVISGHLGWVRC 152

Query: 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT 284
            AVEPGNEWFATGSAD++IK+WDLATGKLK+SLTGH+ SVRGL  S RHPYLFSCG+DR 
Sbjct: 153 CAVEPGNEWFATGSADRVIKIWDLATGKLKVSLTGHISSVRGLAFSQRHPYLFSCGEDRQ 212

Query: 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----- 339
           VKCWDLEYNK  V        S ++SM    S   L+T   D T +++     A      
Sbjct: 213 VKCWDLEYNK--VIRHYHGHLSAVYSMALHPSIDVLVTAGRDSTARVWDMRTKANVHTLV 270

Query: 340 -----------EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
                      + + P ++TGSHDCT+RLWDLAAGKS  TLTNHKKS+R+V  HP+LYMF
Sbjct: 271 GHTNTVASVICQTAEPQIVTGSHDCTVRLWDLAAGKSRATLTNHKKSIRAVTFHPSLYMF 330

Query: 388 ASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
           ASASPDNIKQWKCPEGKFIQNL GHNAI+N + VN +GVLVSGADNGTM  WDWRTGYNF
Sbjct: 331 ASASPDNIKQWKCPEGKFIQNLSGHNAIVNCLAVNADGVLVSGADNGTMHLWDWRTGYNF 390

Query: 448 QRLQVRCVSGFPKPSVFFFFLAF 470
           QRLQ     G        F + F
Sbjct: 391 QRLQAPVQPGSMDSEAGVFSITF 413

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016674|ref|XP_002428875.1| Pleiotropic regulator, putative [Pediculus humanus corporis] gi|212513639|gb|EEB16137.1| Pleiotropic regulator, putative [Pediculus humanus corporis]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/411 (49%), Positives = 241/411 (58%), Gaps = 86/411 (20%)

Query: 144 EVQRHSVHTLVFRSLKRTH---------------------------DMFISCQELVPSTE 176
           ++QRHSVHTLVFRSLKRTH                           D +    E + +++
Sbjct: 4   DIQRHSVHTLVFRSLKRTHDMFLSNQGLLPAVDEKAEKLKKAVKARDCYSGVFERMKNSK 63

Query: 177 NQLV-----------------------PTTASNTQIIQQAKA-----------------K 196
           N +V                       P    N  ++  A A                 K
Sbjct: 64  NNIVKKSNPLTNEEEISVNENGAENNVPLNNENLPLVPAAPAAGALITTNTTTQMLTPRK 123

Query: 197 ALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS 256
              MPKP+WH PWKLYRV+SGHLGWVRC+AVEPGNEW ATGS D++IK+WDLA+GKLK+S
Sbjct: 124 PPTMPKPKWHPPWKLYRVLSGHLGWVRCIAVEPGNEWIATGSGDRVIKIWDLASGKLKVS 183

Query: 257 LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNS 316
           LTGH+ +VRGL VS RHPYLFSCG+DR VKCWDLEYNK  V        S ++S+     
Sbjct: 184 LTGHISTVRGLEVSARHPYLFSCGEDRQVKCWDLEYNK--VIRHYHGHLSAVYSLALHPQ 241

Query: 317 GSRLITTEADKTVKLYKEDDSAT----------------EESHP-VITGSHDCTIRLWDL 359
              L T   D T +++     A                 + + P +ITGSHDCTIRLWDL
Sbjct: 242 IDVLTTAGRDSTARVWDMRTKANVHTLTGHSNTVASVICQAAEPQIITGSHDCTIRLWDL 301

Query: 360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSI 419
           AAGKS  TLTNHKKSVRS+  HP LYMFASASPDNIKQWKCP+GKFIQNL GHNAI+N +
Sbjct: 302 AAGKSRVTLTNHKKSVRSLVFHPLLYMFASASPDNIKQWKCPDGKFIQNLSGHNAIVNCL 361

Query: 420 CVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAF 470
            VN +GVLVSG DNGT+ FWDWRTGYNFQRLQ     G        F + F
Sbjct: 362 AVNQDGVLVSGGDNGTLHFWDWRTGYNFQRLQALVQPGSMDSEAGIFAMNF 412

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469864|ref|XP_002099856.1| GE16491 [Drosophila yakuba] gi|194187380|gb|EDX00964.1| GE16491 [Drosophila yakuba]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/306 (59%), Positives = 220/306 (71%), Gaps = 22/306 (7%)

Query: 182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADK 241
           TTASN Q+I +   KA  +PKP+WHAPWKL RVISGHLGWVRC+AVEPGNEWFATG+ D+
Sbjct: 136 TTASNLQLIPK---KAPSIPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDR 192

Query: 242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
           +IK+WDLA+GKLKLSLTGHV +VRG+ VS +HPYLFSCG+DR VKCWDLEYNK  V    
Sbjct: 193 VIKIWDLASGKLKLSLTGHVSTVRGVAVSSKHPYLFSCGEDRQVKCWDLEYNK--VIRHY 250

Query: 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHP- 344
               S ++S+    +   L T+  D T +++     A                 + ++P 
Sbjct: 251 HGHLSAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNTVASVVAQATNPQ 310

Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGK 404
           +ITGSHD T+RLWDLAAGKS+CTLTNHKKSVRS+ LHP+LYMFASASPDNIKQW+CPEG 
Sbjct: 311 IITGSHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHPSLYMFASASPDNIKQWRCPEGN 370

Query: 405 FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVF 464
           F+QN+ GH AI+N +  NN+GVLVSG DNGTM FWDWRTGYNFQR Q     G       
Sbjct: 371 FVQNISGHTAIVNCMAANNDGVLVSGGDNGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAG 430

Query: 465 FFFLAF 470
            F + F
Sbjct: 431 IFAMCF 436

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
FB|FBgn0030365	482	Tango4 "Transport and Golgi or	0.592	0.589	0.589	8.2e-106
UNIPROTKB|O43660	514	PLRG1 "Pleiotropic regulator 1	0.613	0.571	0.566	3.6e-101
RGD|621047	514	Plrg1 "pleiotropic regulator 1	0.613	0.571	0.563	5.9e-101
MGI|MGI:1858197	513	Plrg1 "pleiotropic regulator 1	0.611	0.571	0.566	7.5e-101
UNIPROTKB|E2QYT6	515	PLRG1 "Uncharacterized protein	0.586	0.545	0.580	8.6e-100
UNIPROTKB|E1BVN5	516	PLRG1 "Uncharacterized protein	0.540	0.501	0.607	2.3e-99
ZFIN|ZDB-GENE-040426-2787	519	plrg1 "pleiotropic regulator 1	0.540	0.499	0.597	2.3e-97
UNIPROTKB|Q2KID6	513	PLRG1 "Pleiotropic regulator 1	0.590	0.551	0.576	2.2e-89
WB|WBGene00006481	494	plrg-1 [Caenorhabditis elegans	0.540	0.524	0.576	3.9e-87
POMBASE|SPBP22H7.07	473	prp5 "WD repeat protein Prp5"	0.544	0.551	0.519	1.1e-78

FB|FBgn0030365 Tango4 "Transport and Golgi organization 4" [Drosophila melanogaster (taxid:7227)]

 Score = 940 (336.0 bits), Expect = 8.2e-106, Sum P(2) = 8.2e-106
 Identities = 178/302 (58%), Positives = 225/302 (74%)

Query:   184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKII 243
             AS+ Q+I +   KA  +PKP+WHAPWKL RVISGHLGWVRC+AVEPGNEWFATG+ D++I
Sbjct:   140 ASHLQLIPK---KAPSIPKPKWHAPWKLSRVISGHLGWVRCIAVEPGNEWFATGAGDRVI 196

Query:   244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK--------- 294
             K+WDLA+GKLKLSLTGHV +VRG+ VS +HPYLFSCG+DR VKCWDLEYNK         
Sbjct:   197 KIWDLASGKLKLSLTGHVSTVRGVAVSTKHPYLFSCGEDRQVKCWDLEYNKVIRHYHGHL 256

Query:   295 APVQPGSMDSESGIFSMTFDNSGSRL--ITTEAD-KTVKLYKEDDSAT--EESHP-VITG 348
             + V   ++     + + +  +S +R+  + T+A+  T+  +    ++   + ++P +ITG
Sbjct:   257 SAVYSLALHPTIDVLATSGRDSTARIWDMRTKANVHTLTGHTNTVASVVAQATNPQIITG 316

Query:   349 SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQN 408
             SHD T+RLWDLAAGKS+CTLTNHKKSVRS+ LHP+LYMFASASPDNIKQW+CPEGKF+QN
Sbjct:   317 SHDSTVRLWDLAAGKSVCTLTNHKKSVRSIVLHPSLYMFASASPDNIKQWRCPEGKFVQN 376

Query:   409 LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFL 468
             + GH +I+N +  N+EGVLVSG DNGTM FWDWRTGYNFQR Q     G        F +
Sbjct:   377 ISGHTSIVNCMAANSEGVLVSGGDNGTMFFWDWRTGYNFQRFQAPVQPGSMDSEAGIFAM 436

Query:   469 AF 470
              F
Sbjct:   437 CF 438

GO:0003674 "molecular_function" evidence=ND

GO:0009306 "protein secretion" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007030 "Golgi organization" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

UNIPROTKB|O43660 PLRG1 "Pleiotropic regulator 1" [Homo sapiens (taxid:9606)]

 Score = 904 (323.3 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
 Identities = 179/316 (56%), Positives = 213/316 (67%)

Query:   173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
             P+  N +V  T +       AK KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct:   159 PTAMNSIVMETGNTKNSALMAK-KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 217

Query:   233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
             WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct:   218 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 277

Query:   293 NKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------ 339
             NK      G +   S ++ +    +   L+T   D T +++     A+            
Sbjct:   278 NKVIRHYHGHL---SAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVA 334

Query:   340 ----EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN 394
                 + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDN
Sbjct:   335 TVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDN 394

Query:   395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
             IKQWK P+G FIQNL GHNAIIN++ VN++GVLVSGADNGTM  WDWRTGYNFQR+    
Sbjct:   395 IKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAV 454

Query:   455 VSGFPKPSVFFFFLAF 470
               G        F  AF
Sbjct:   455 QPGSLDSESGIFACAF 470

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003714 "transcription corepressor activity" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

RGD|621047 Plrg1 "pleiotropic regulator 1" [Rattus norvegicus (taxid:10116)]

 Score = 902 (322.6 bits), Expect = 5.9e-101, Sum P(2) = 5.9e-101
 Identities = 178/316 (56%), Positives = 213/316 (67%)

Query:   173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
             P+  N ++  T++       AK KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct:   159 PTAMNSMIMETSNTKNSALMAK-KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 217

Query:   233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
             WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct:   218 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 277

Query:   293 NKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------ 339
             NK      G +   S ++ +    +   L+T   D T +++     A+            
Sbjct:   278 NKVIRHYHGHL---SAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVA 334

Query:   340 ----EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN 394
                 + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDN
Sbjct:   335 TVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLHYTFASGSPDN 394

Query:   395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
             IKQWK P+G FIQNL GHNAIIN++ VN +GVLVSGADNGTM  WDWRTGYNFQR+    
Sbjct:   395 IKQWKFPDGGFIQNLSGHNAIINTLAVNTDGVLVSGADNGTMHLWDWRTGYNFQRVHAAV 454

Query:   455 VSGFPKPSVFFFFLAF 470
               G        F  AF
Sbjct:   455 QPGSLDSESGIFACAF 470

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO

MGI|MGI:1858197 Plrg1 "pleiotropic regulator 1, PRL1 homolog (Arabidopsis)" [Mus musculus (taxid:10090)]

 Score = 901 (322.2 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
 Identities = 179/316 (56%), Positives = 213/316 (67%)

Query:   173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE 232
             P+  N ++ T   NT+       KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+
Sbjct:   159 PTAMNSIMET--GNTKNSALMAKKAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQ 216

Query:   233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
             WF TGSAD+ IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEY
Sbjct:   217 WFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEY 276

Query:   293 NKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------ 339
             NK      G +   S ++ +    +   L+T   D T +++     A+            
Sbjct:   277 NKVIRHYHGHL---SAVYGLDLHPTLDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVA 333

Query:   340 ----EESHP-VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN 394
                 + + P +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP LY FAS SPDN
Sbjct:   334 TVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPLLYTFASGSPDN 393

Query:   395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
             IKQWK P+G FIQNL GHNAIIN++ VN +GVLVSGADNGTM  WDWRTGYNFQR+    
Sbjct:   394 IKQWKFPDGGFIQNLSGHNAIINTLAVNADGVLVSGADNGTMHLWDWRTGYNFQRVHAAV 453

Query:   455 VSGFPKPSVFFFFLAF 470
               G        F  AF
Sbjct:   454 QPGSLDSESGIFACAF 469

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|E2QYT6 PLRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 891 (318.7 bits), Expect = 8.6e-100, Sum P(2) = 8.6e-100
 Identities = 177/305 (58%), Positives = 211/305 (69%)

Query:   184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKII 243
             A N+ ++  AK KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+WF TGSAD+ I
Sbjct:   173 AKNSALM--AK-KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTI 229

Query:   244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSM 302
             K+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEYNK      G +
Sbjct:   230 KIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHL 289

Query:   303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHP-V 345
                S ++ +    +   L+T   D T +++     A+                + + P +
Sbjct:   290 ---SAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQI 346

Query:   346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF 405
             ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNIKQWK P+G F
Sbjct:   347 ITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSF 406

Query:   406 IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF 465
             IQNL GHNAIIN++ VN++GVLVSGADNGTM  WDWRTGYNFQR+      G        
Sbjct:   407 IQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSESGI 466

Query:   466 FFLAF 470
             F  AF
Sbjct:   467 FACAF 471

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E1BVN5 PLRG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 887 (317.3 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
 Identities = 170/280 (60%), Positives = 201/280 (71%)

Query:   196 KALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL 255
             KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+WF TGSAD+ IK+WDLA+GKLKL
Sbjct:   183 KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKL 242

Query:   256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFD 314
             SLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEYNK      G +   S ++ +   
Sbjct:   243 SLTGHISTVRGVIVSARSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHL---SAVYGLDLH 299

Query:   315 NSGSRLITTEADKTVKLYKEDDSAT----------------EESHP-VITGSHDCTIRLW 357
              +   L+T   D T +++     A+                + + P V+TGSHD TIRLW
Sbjct:   300 PTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVKCQAAEPQVVTGSHDTTIRLW 359

Query:   358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIIN 417
             DL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNIKQWK P+G FIQNL GHNAIIN
Sbjct:   360 DLVAGKTRVTLTNHKKSVRAVILHPRHYTFASGSPDNIKQWKFPDGNFIQNLSGHNAIIN 419

Query:   418 SICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG 457
             ++ VN++GVLVSGADNGTM  WDWRTGYNFQR+      G
Sbjct:   420 TLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPG 459

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

ZFIN|ZDB-GENE-040426-2787 plrg1 "pleiotropic regulator 1" [Danio rerio (taxid:7955)]

 Score = 864 (309.2 bits), Expect = 2.3e-97, Sum P(2) = 2.3e-97
 Identities = 168/281 (59%), Positives = 201/281 (71%)

Query:   196 KALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL 255
             KA  MPKPQWH PWKLYRVISGHLGWVR +AVEPGN+WF TGSAD+ IK+WDLA+GKLKL
Sbjct:   185 KAPTMPKPQWHPPWKLYRVISGHLGWVRSIAVEPGNQWFVTGSADRTIKIWDLASGKLKL 244

Query:   256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFD 314
             SLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEYNK      G +   S ++ +   
Sbjct:   245 SLTGHISTVRGVAVSNRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHL---SAVYDLDLH 301

Query:   315 NSGSRLITTEADKTVKLYK-------------EDDSAT---EESHP-VIT-GSHDCTIRL 356
              +   L+T   D T +++               +  AT   + + P V+T GSHD TIRL
Sbjct:   302 PTIDVLVTCSRDATARVWDIRTKANVHTLSGHTNTVATVKCQSAEPQVVTVGSHDTTIRL 361

Query:   357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAII 416
             WDL AGK+  TLTNHKKSVR++ LHP  Y FAS SPDNIKQWK P+G FIQNL GHNAII
Sbjct:   362 WDLVAGKTRATLTNHKKSVRALVLHPRQYTFASGSPDNIKQWKFPDGNFIQNLSGHNAII 421

Query:   417 NSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG 457
             N++ VN++GVLVSGADNGT+  WDWRTGYNFQR+      G
Sbjct:   422 NTLAVNSDGVLVSGADNGTIHMWDWRTGYNFQRIHAAVQPG 462

GO:0003824 "catalytic activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IGI;IMP

UNIPROTKB|Q2KID6 PLRG1 "Pleiotropic regulator 1" [Bos taurus (taxid:9913)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 177/307 (57%), Positives = 212/307 (69%)

Query:   182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADK 241
             + A N+ ++  AK KA  MPKPQWH PWKLYRVISGHLGWVRC+AVEPGN+WF TGSAD+
Sbjct:   169 SNAKNSALM--AK-KAPTMPKPQWHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADR 225

Query:   242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PG 300
              IK+WDLA+GKLKLSLTGH+ +VRG+ VS R PYLFSCG+D+ VKCWDLEYNK      G
Sbjct:   226 TIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHG 285

Query:   301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHP 344
              +   S ++ +    +   L+T   D T +++     A+                + + P
Sbjct:   286 HL---SAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEP 342

Query:   345 -VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG 403
              +ITGSHD TIRLWDL AGK+  TLTNHKKSVR+V LHP  Y FAS SPDNIKQWK P+G
Sbjct:   343 QIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDG 402

Query:   404 KFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSV 463
              FIQNL GHNAIIN++ VN++GVLVSGADNGTM  WDWRTGYNFQR+      G      
Sbjct:   403 SFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAAVQPGSLDSES 462

Query:   464 FFFFLAF 470
               F  AF
Sbjct:   463 GIFACAF 469

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

WB|WBGene00006481 plrg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 843 (301.8 bits), Expect = 3.9e-87, Sum P(2) = 3.9e-87
 Identities = 158/274 (57%), Positives = 201/274 (73%)

Query:   195 AKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK 254
             +KA  M KP+WHAPWKLYRV SGH GWVR V VEPGN+WFA+G AD+IIK+WDLA+G+LK
Sbjct:   160 SKAPMMMKPKWHAPWKLYRVASGHTGWVRAVDVEPGNQWFASGGADRIIKIWDLASGQLK 219

Query:   255 LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK---------APVQPGSMDSE 305
             LSLTGH+ SVR + VSPRHP+LFS G+D+ VKCWDLEYNK         + VQ  S+   
Sbjct:   220 LSLTGHISSVRAVKVSPRHPFLFSGGEDKQVKCWDLEYNKVIRHYHGHLSAVQALSVHPS 279

Query:   306 SGIFSMTFDNSGSRLITTEADKTVKLYKED-----DSATEESHP-VITGSHDCTIRLWDL 359
               +      +S +R+        V  +        D   +   P VIT SHD T+RLWDL
Sbjct:   280 LDVLVTCARDSTARVWDMRTKAQVHCFAGHTNTVADVVCQSVDPQVITASHDATVRLWDL 339

Query:   360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSI 419
             AAG+S+CTLT+HKKSVR++ +HP L MFASASPDNIKQWK P+G+F+QNL GHNAIIN++
Sbjct:   340 AAGRSMCTLTHHKKSVRALTIHPRLNMFASASPDNIKQWKLPKGEFMQNLSGHNAIINTL 399

Query:   420 CVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453
               N++GV+VSGADNG++CFWDWR+G+ FQ++Q +
Sbjct:   400 SSNDDGVVVSGADNGSLCFWDWRSGFCFQKIQTK 433

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0018996 "molting cycle, collagen and cuticulin-based cuticle" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

POMBASE|SPBP22H7.07 prp5 "WD repeat protein Prp5" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 148/285 (51%), Positives = 201/285 (70%)

Query:   185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIK 244
             S   ++++  A+ +   +P+WHAPW L RVISGHLGWVRCV VEPGN+WF TG+ D+ IK
Sbjct:   132 SQASLVKRTLAEQI---RPEWHAPWTLMRVISGHLGWVRCVDVEPGNQWFCTGAGDRTIK 188

Query:   245 VWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSMD 303
             +WDLA+G LKL+LTGH+ +VRGL VSPRHPYLFSCG+D+ VKCWDLE NK      G + 
Sbjct:   189 IWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHL- 247

Query:   304 SESGIFSMTFDNSGSRLITTEADKTVKLY----KED------------DSATEESHP-VI 346
               SG++++    +   L+T   D   +++    +++              A +E  P V+
Sbjct:   248 --SGVYALKLHPTLDVLVTAGRDAVARVWDMRTRQNVHVLSGHKSTVASLAVQEFDPQVV 305

Query:   347 TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFI 406
             TGS D TIRLWDLAAGK+L TLT+HKK+VR+++LHP  + FAS S DNIK WK PEG F+
Sbjct:   306 TGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHPDEFTFASGSSDNIKHWKFPEGAFM 365

Query:   407 QNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
              N  GHNAI+N++ +N++ V+ SGADNG+MCFWDW++G+ +Q LQ
Sbjct:   366 GNFEGHNAIVNTLSINSDNVMFSGADNGSMCFWDWKSGHKYQELQ 410

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9WUC8	PLRG1_RAT	No assigned EC number	0.5682	0.6158	0.5739	yes	N/A
Q2KID6	PLRG1_BOVIN	No assigned EC number	0.5718	0.5929	0.5536	yes	N/A
O13615	PRP46_SCHPO	No assigned EC number	0.5209	0.5574	0.5644	yes	N/A
Q5BE22	PRP46_EMENI	No assigned EC number	0.5208	0.5574	0.5907	yes	N/A
Q4WT34	PRP46_ASPFU	No assigned EC number	0.5384	0.5302	0.5607	yes	N/A
P0CS48	PRP46_CRYNJ	No assigned EC number	0.5390	0.5177	0.5243	yes	N/A
Q922V4	PLRG1_MOUSE	No assigned EC number	0.5682	0.6137	0.5730	yes	N/A
O43660	PLRG1_HUMAN	No assigned EC number	0.5682	0.6158	0.5739	yes	N/A
Q6BU94	PRP46_DEBHA	No assigned EC number	0.3373	0.6325	0.7266	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	479
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-59
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-43
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-42
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-38
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-29
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-22
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-16
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
smart00320	40	smart00320, WD40, WD40 repeats	9e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	2e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	7e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  195 bits (498), Expect = 6e-59
 Identities = 99/280 (35%), Positives = 133/280 (47%), Gaps = 28/280 (10%)

Query: 211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS 270
           L R + GH G V CVA  P  +  ATGS D  IKVWDL TG+L  +L GH G VR +  S
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60

Query: 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-ESGIFSMTFDNSGSRLITTEADKTV 329
               YL S   D+T++ WDLE         ++    S + S+ F   G  L ++  DKT+
Sbjct: 61  ADGTYLASGSSDKTIRLWDLE---TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 330 KLYKEDD---SATEESHP--------------VITGSHDCTIRLWDLAAGKSLCTLTNHK 372
           K++  +      T   H               V + S D TI+LWDL  GK + TLT H 
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT 177

Query: 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG 430
             V SVA  P      S+S D  IK W    GK +  L GH   +NS+  + +G +L SG
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237

Query: 431 ADNGTMCFWDWRTGYNFQRLQ-----VRCVSGFPKPSVFF 465
           +++GT+  WD RTG   Q L      V  ++  P      
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  153 bits (388), Expect = 6e-43
 Identities = 78/235 (33%), Positives = 109/235 (46%), Gaps = 33/235 (14%)

Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
           +  R ++GH  +V  VA  P     ++ S DK IKVWD+ TGK   +L GH   V  +  
Sbjct: 84  ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143

Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADK 327
           SP   ++ S   D T+K WDL   K  V    G       + S+ F   G +L       
Sbjct: 144 SPDGTFVASSSQDGTIKLWDLRTGK-CVATLTG---HTGEVNSVAFSPDGEKL------- 192

Query: 328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF 387
                             ++ S D TI+LWDL+ GK L TL  H+  V SVA  P  Y+ 
Sbjct: 193 ------------------LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 388 ASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
           AS S D  I+ W    G+ +Q L GH   + S+  + +G  L SG+ +GT+  WD
Sbjct: 235 ASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  152 bits (385), Expect = 2e-42
 Identities = 100/377 (26%), Positives = 140/377 (37%), Gaps = 92/377 (24%)

Query: 26  IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
            R   GH   V  ++  P   +L T   D T +VWD+ T   + TL GHT  +  V   A
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA 61

Query: 86  SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
                                L +               TIR W L+             
Sbjct: 62  DGTY-----------------LASGS----------SDKTIRLWDLE------------- 81

Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
               V TL        H  ++S   +  S + +++ +++ +  I               W
Sbjct: 82  TGECVRTL------TGHTSYVSS--VAFSPDGRILSSSSRDKTIK-------------VW 120

Query: 206 HAPW-KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264
                K    + GH  WV  VA  P   + A+ S D  IK+WDL TGK   +LTGH G V
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV 180

Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-ESGIFSMTFDNSGSRLITT 323
             +  SP    L S   D T+K WDL         G++   E+G+ S+ F   G  L+  
Sbjct: 181 NSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDG-YLLA- 235

Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
                                  +GS D TIR+WDL  G+ + TL+ H  SV S+A  P 
Sbjct: 236 -----------------------SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD 272

Query: 384 LYMFASASPDN-IKQWK 399
               AS S D  I+ W 
Sbjct: 273 GKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  139 bits (353), Expect = 7e-38
 Identities = 88/333 (26%), Positives = 132/333 (39%), Gaps = 78/333 (23%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           VWDL TG+L  +L GH G VR                 ++       L +   D T R+W
Sbjct: 35  VWDLETGELLRTLKGHTGPVR----------------DVAASADGTYLASGSSDKTIRLW 78

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
           D+ T   V TLTGHT+ ++SV                             G +LS   S 
Sbjct: 79  DLETGECVRTLTGHTSYVSSVAFSPD------------------------GRILSS--SS 112

Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
            D  TI+ W   +   +C           + TL      R H  +++   +  S +   V
Sbjct: 113 RD-KTIKVW--DVETGKC-----------LTTL------RGHTDWVNS--VAFSPDGTFV 150

Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
             ++S    I+    +             K    ++GH G V  VA  P  E   + S+D
Sbjct: 151 -ASSSQDGTIKLWDLRT-----------GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG 300
             IK+WDL+TGK   +L GH   V  +  SP    L S  +D T++ WDL      VQ  
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR-TGECVQTL 257

Query: 301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
           S    + + S+ +   G RL +  AD T++++ 
Sbjct: 258 SG-HTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  123 bits (308), Expect = 2e-30
 Identities = 107/437 (24%), Positives = 176/437 (40%), Gaps = 80/437 (18%)

Query: 31  GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
           GH  S+ +I+  P  ++L++   D T ++WD+                  + +       
Sbjct: 63  GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE------------KLIKSLEGLHDS 110

Query: 91  GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSV 150
               + L S +    +L ++             GT++ W L           + ++    
Sbjct: 111 SVSKLALSSPDGNSILLASSSL----------DGTVKLWDLST-------PGKLIRTLEG 153

Query: 151 HTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWK 210
           H+    SL  + D              +L+ + +S    I           K       K
Sbjct: 154 HSESVTSLAFSPD-------------GKLLASGSSLDGTI-----------KLWDLRTGK 189

Query: 211 LYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLS-LTGHVGSVRGLT 268
               ++GH   V  +A  P G    A+GS+D  I++WDL+TGKL  S L+GH  SV   +
Sbjct: 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSS 248

Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
            SP    L S   D T++ WDL  + + ++  S  S S + S+ F   G  L +  +D T
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS-VLSVAFSPDGKLLASGSSDGT 307

Query: 329 VKLYKEDDSAT--------------------EESHPVITGSHDCTIRLWDLAAGKSLCTL 368
           V+L+  +                        + S  V  GS D TIRLWDL  GK L   
Sbjct: 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-KT 366

Query: 369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGV- 426
                +V SV+  P   + +S S D  ++ W    G  ++NL GH + + S+  + +G  
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS 426

Query: 427 LVSGADNGTMCFWDWRT 443
           L SG+ + T+  WD +T
Sbjct: 427 LASGSSDNTIRLWDLKT 443

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  119 bits (299), Expect = 2e-29
 Identities = 82/267 (30%), Positives = 124/267 (46%), Gaps = 26/267 (9%)

Query: 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGS-ADKIIKVWDLATGKLKLSLTGHVGSVRG 266
           P KL R + GH   V  +A  P  +  A+GS  D  IK+WDL TGK   +L GH   V  
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203

Query: 267 LTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
           L  SP    L  S   D T++ WDL   K  +   ++   S     +F   GS L +  +
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGK--LLRSTLSGHSDSVVSSFSPDGSLLASGSS 261

Query: 326 DKTVKLYKEDDSATE------------------ESHPVITGSHDCTIRLWDLAAGKSLCT 367
           D T++L+    S++                   +   + +GS D T+RLWDL  GK L +
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321

Query: 368 LT--NHKKSVRSVALHPTLYMFASASPDN--IKQWKCPEGKFIQNLPGHNAIINSICVNN 423
           LT   H+  V S++  P   +  S   D+  I+ W    GK ++ L GH+ +++     +
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD 381

Query: 424 EGVLVSGADNGTMCFWDWRTGYNFQRL 450
             V+ SG+ +GT+  WD  TG   + L
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLRNL 408

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.0 bits (245), Expect = 3e-22
 Identities = 79/265 (29%), Positives = 112/265 (42%), Gaps = 39/265 (14%)

Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTG-HVGSVRGLTV-SP 271
           + GH   +  +A  P  E   +GS+D  IK+WDL  G+  + SL G H  SV  L + SP
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 272 RHPYLFSCG--DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
               +       D TVK WDL      ++     SES + S+ F   G  L +       
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLAS------- 172

Query: 330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFA 388
                              S D TI+LWDL  GK L TL  H   V S+A  P    + A
Sbjct: 173 -----------------GSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215

Query: 389 SASPDN-IKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYN 446
           S S D  I+ W    GK +++ L GH+  + S    +  +L SG+ +GT+  WD R+  +
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275

Query: 447 FQRL------QVRCVSGFPKPSVFF 465
             R        V  V+  P   +  
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLA 300

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.4 bits (194), Expect = 8e-16
 Identities = 73/330 (22%), Positives = 118/330 (35%), Gaps = 88/330 (26%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLT----------------VIRHY------------HGH 32
           +WDL TGK   +L GH   V  L                  IR +             GH
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 33  LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKAN-VYTLTGHTNTIASVVTQASEPQVG 91
             SV + S  P   +L +   D T R+WD+R+ ++ + TL+GH++++             
Sbjct: 242 SDSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV------------- 287

Query: 92  TKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVH 151
             +V      +++    + G             T+R W L+  +    L L+        
Sbjct: 288 -LSVAFSPDGKLLASGSSDG-------------TVRLWDLETGKLLSSLTLK-------- 325

Query: 152 TLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKL 211
                     H+  +S   L  S +  L+ +  S+   I+             W      
Sbjct: 326 ---------GHEGPVSS--LSFSPDGSLLVSGGSDDGTIRL------------WDLRTGK 362

Query: 212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP 271
                     V  V+  P     ++GS D  +++WDL+TG L  +L GH   V  L  SP
Sbjct: 363 PLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP 422

Query: 272 RHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
               L S   D T++ WDL+ +   V    
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 74.4 bits (181), Expect = 3e-14
 Identities = 74/330 (22%), Positives = 124/330 (37%), Gaps = 51/330 (15%)

Query: 26  IRHYHGHLSSVNTISLHPTIDVLITAGR-DSTARVWDVRTKANVYTLTGHTNTIAS---- 80
           IR   GH  SV +++  P   +L +    D T ++WD+RT   + TL GHT+ ++S    
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207

Query: 81  ------VVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDF------GTIRP 128
                 + + +S+  +    +      R      +   + S  P           GTIR 
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRL 267

Query: 129 WQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ 188
           W L+        +   ++  S H+    S+  + D               L   ++  T 
Sbjct: 268 WDLRS-------SSSLLRTLSGHSSSVLSVAFSPD------------GKLLASGSSDGTV 308

Query: 189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATG-SADKIIKVWD 247
            +   +   L                + GH G V  ++  P      +G S D  I++WD
Sbjct: 309 RLWDLETGKLLSSLT-----------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Query: 248 LATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG 307
           L TGK   +L GH  +V  ++ SP    + S   D TV+ WDL             S   
Sbjct: 358 LRTGKPLKTLEGH-SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-- 414

Query: 308 IFSMTFDNSGSRLITTEADKTVKLYKEDDS 337
           + S+ F   G  L +  +D T++L+    S
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
             +L + + GH G V  VA  P  ++ A+GS D  IK+WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query: 250 TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
           +G+L  +L GH G V  +  SP   YL S  DD T+K WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 17/39 (43%), Positives = 21/39 (53%)

Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
            KL R + GH G V  VA  P     A+GS D  ++VWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 21/39 (53%)

Query: 251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
           GKL  +L GH G V  +  SP    L S  DD TV+ WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
           ++R   GH   V +++  P  ++L +   D T RVWD
Sbjct: 2  KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
           +++   GH   V +++  P    L +   D T ++WD
Sbjct: 3  ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 32/154 (20%)

Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYN 293
           A+ + + +++VWD+A  +L   +  H   V  +  S   P L + G DD +VK W +   
Sbjct: 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG 608

Query: 294 KAPVQPGSMDSESGIFSMTF-DNSGSRLITTEAD----------------------KTVK 330
              V  G++ +++ I  + F   SG  L    AD                      KTV 
Sbjct: 609 ---VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665

Query: 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS 364
             +  DS+T     +++ S D T++LWDL+   S
Sbjct: 666 YVRFVDSST-----LVSSSTDNTLKLWDLSMSIS 694

Length = 793

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 2   WDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPT-IDVLITAGRDSTARVW 60
           W +    L  +++           I H  GH   V  +S HP+ ++VL +AG D    VW
Sbjct: 103 WGIPEEGLTQNISDP---------IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153

Query: 61  DVRTKANVYTLTGHTNTIASV 81
           DV     V  +  H++ I S+
Sbjct: 154 DVERGKAVEVIKCHSDQITSL 174

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 403 GKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
           G+ ++ L GH   + S+  + +G  L SG+D+GT+  WD
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWK 399
           GK L TL  H   V SVA  P   + AS S D  ++ W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 403 GKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD 440
           GK ++ L GH   + S+  + +G +L SG+D+GT+  WD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWK 399
           G+ L TL  H   V SVA  P     AS S D  IK W 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
KOG0271|consensus	480		100.0
KOG0285|consensus	460		100.0
KOG0272|consensus	459		100.0
KOG0319|consensus	775		100.0
KOG0286|consensus	343		100.0
KOG0271|consensus	480		100.0
KOG0319|consensus	775		100.0
KOG0295|consensus	406		100.0
KOG0279|consensus	315		100.0
KOG0279|consensus	315		100.0
KOG0291|consensus	893		100.0
KOG0315|consensus	311		100.0
KOG0318|consensus	603		100.0
KOG0263|consensus	707		100.0
KOG0306|consensus	888		100.0
KOG0272|consensus	459		100.0
KOG0285|consensus	460		100.0
KOG0296|consensus	399		100.0
KOG0318|consensus	603		100.0
KOG0265|consensus	338		100.0
KOG0291|consensus	893		100.0
KOG0286|consensus	343		100.0
KOG0645|consensus	312		100.0
KOG0266|consensus	456		100.0
KOG0292|consensus	1202		100.0
KOG0273|consensus	524		100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295|consensus	406		100.0
KOG0293|consensus	519		100.0
KOG0284|consensus	464		100.0
KOG0282|consensus	503		100.0
KOG0315|consensus	311		100.0
KOG0313|consensus	423		100.0
KOG0263|consensus	707		100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316|consensus	307		99.98
KOG0278|consensus	334		99.98
KOG0281|consensus	499		99.98
KOG0276|consensus	794		99.97
KOG0316|consensus	307		99.97
KOG0281|consensus	499		99.97
KOG0292|consensus	1202		99.97
KOG0306|consensus	888		99.97
KOG0300|consensus	481		99.97
KOG0640|consensus	430		99.97
KOG0273|consensus	524		99.97
KOG0276|consensus	794		99.97
KOG0283|consensus	712		99.97
KOG0274|consensus	537		99.96
KOG0284|consensus	464		99.96
KOG0266|consensus	456		99.96
KOG0643|consensus	327		99.96
KOG0275|consensus	508		99.96
KOG0296|consensus	399		99.96
KOG0313|consensus	423		99.96
KOG0645|consensus	312		99.96
KOG0282|consensus	503		99.96
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.96
KOG0293|consensus	519		99.95
KOG0265|consensus	338		99.95
KOG0274|consensus	537		99.95
KOG1446|consensus	311		99.95
KOG0294|consensus	362		99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0299|consensus	479		99.95
PLN00181	793	protein SPA1-RELATED; Provisional	99.95
KOG0305|consensus	484		99.95
KOG0268|consensus	433		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1407|consensus	313		99.94
KOG0277|consensus	311		99.94
KOG0650|consensus	733		99.94
KOG0301|consensus	745		99.94
KOG1407|consensus	313		99.94
KOG0973|consensus	942		99.94
KOG1063|consensus	764		99.94
KOG2106|consensus	626		99.94
KOG1539|consensus	910		99.94
KOG1408|consensus	1080		99.94
KOG0278|consensus	334		99.93
KOG1539|consensus	910		99.93
KOG0640|consensus	430		99.93
KOG0310|consensus	487		99.93
PTZ00420	568	coronin; Provisional	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0288|consensus	459		99.93
KOG0647|consensus	347		99.93
KOG0288|consensus	459		99.93
KOG0275|consensus	508		99.93
KOG1446|consensus	311		99.93
KOG0643|consensus	327		99.92
KOG0310|consensus	487		99.92
KOG2096|consensus	420		99.92
KOG0772|consensus	641		99.92
KOG0289|consensus	506		99.92
KOG0264|consensus	422		99.92
KOG0647|consensus	347		99.91
KOG0641|consensus	350		99.91
KOG0308|consensus	735		99.91
KOG0301|consensus	745		99.91
KOG0299|consensus	479		99.91
KOG1036|consensus	323		99.91
KOG0277|consensus	311		99.91
KOG0300|consensus	481		99.91
KOG1408|consensus	1080		99.9
KOG0641|consensus	350		99.9
KOG0308|consensus	735		99.9
KOG2445|consensus	361		99.89
KOG0268|consensus	433		99.89
KOG0646|consensus	476		99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0283|consensus	712		99.89
KOG1332|consensus	299		99.89
KOG0646|consensus	476		99.89
KOG1036|consensus	323		99.88
KOG0289|consensus	506		99.88
KOG0267|consensus	825		99.88
KOG1063|consensus	764		99.88
KOG0267|consensus	825		99.88
KOG0639|consensus	705		99.87
KOG2106|consensus	626		99.87
KOG2048|consensus	691		99.87
KOG1332|consensus	299		99.87
KOG2055|consensus	514		99.86
KOG4283|consensus	397		99.86
KOG0973|consensus	942		99.86
KOG1274|consensus	933		99.85
KOG0305|consensus	484		99.85
KOG0270|consensus	463		99.85
KOG4283|consensus	397		99.84
KOG0294|consensus	362		99.84
KOG2096|consensus	420		99.84
KOG0772|consensus	641		99.84
KOG0264|consensus	422		99.84
KOG0302|consensus	440		99.83
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.83
KOG0644|consensus	1113		99.82
KOG1445|consensus	1012		99.82
KOG0321|consensus	720		99.81
KOG1273|consensus	405		99.81
KOG0302|consensus	440		99.81
KOG0321|consensus	720		99.81
KOG4328|consensus	498		99.8
KOG0642|consensus	577		99.8
KOG0642|consensus	577		99.8
KOG4227|consensus	609		99.8
KOG1273|consensus	405		99.8
KOG0269|consensus	839		99.8
KOG2445|consensus	361		99.8
KOG0269|consensus	839		99.8
KOG1009|consensus	434		99.79
KOG0307|consensus	1049		99.78
KOG0307|consensus	1049		99.76
KOG0270|consensus	463		99.76
KOG0322|consensus	323		99.76
KOG1034|consensus	385		99.76
KOG0771|consensus	398		99.75
KOG0303|consensus	472		99.75
KOG0650|consensus	733		99.75
KOG2055|consensus	514		99.75
KOG4378|consensus	673		99.74
KOG4328|consensus	498		99.74
KOG2048|consensus	691		99.74
COG2319	466	FOG: WD40 repeat [General function prediction only	99.73
KOG4378|consensus	673		99.73
KOG0639|consensus	705		99.72
KOG0303|consensus	472		99.71
KOG0322|consensus	323		99.71
KOG0644|consensus	1113		99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.7
KOG2919|consensus	406		99.7
KOG1963|consensus	792		99.7
KOG1034|consensus	385		99.66
KOG1274|consensus	933		99.65
KOG1334|consensus	559		99.64
KOG1310|consensus	758		99.63
KOG2919|consensus	406		99.63
KOG1538|consensus	1081		99.63
KOG1007|consensus	370		99.62
KOG0649|consensus	325		99.61
KOG0649|consensus	325		99.6
KOG1517|consensus	1387		99.6
KOG4227|consensus	609		99.59
KOG1007|consensus	370		99.59
KOG1009|consensus	434		99.58
KOG1524|consensus	737		99.58
KOG1240|consensus	1431		99.58
KOG1963|consensus	792		99.58
KOG1188|consensus	376		99.56
KOG1445|consensus	1012		99.55
KOG1538|consensus	1081		99.55
KOG1240|consensus	1431		99.55
KOG1587|consensus	555		99.55
KOG1188|consensus	376		99.53
KOG0290|consensus	364		99.51
KOG2110|consensus	391		99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.5
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
KOG0771|consensus	398		99.47
PRK01742	429	tolB translocation protein TolB; Provisional	99.47
PRK11028	330	6-phosphogluconolactonase; Provisional	99.47
KOG0290|consensus	364		99.45
KOG1524|consensus	737		99.44
KOG1310|consensus	758		99.43
KOG1587|consensus	555		99.41
KOG2110|consensus	391		99.4
KOG1334|consensus	559		99.39
KOG1523|consensus	361		99.39
KOG1272|consensus	545		99.39
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.38
KOG2394|consensus	636		99.37
PRK11028	330	6-phosphogluconolactonase; Provisional	99.35
KOG3881|consensus	412		99.35
KOG1517|consensus	1387		99.32
KOG2111|consensus	346		99.31
KOG2394|consensus	636		99.3
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.27
KOG2321|consensus	703		99.24
PRK03629	429	tolB translocation protein TolB; Provisional	99.23
PRK05137	435	tolB translocation protein TolB; Provisional	99.23
KOG0974|consensus	967		99.2
PRK03629	429	tolB translocation protein TolB; Provisional	99.2
KOG1354|consensus	433		99.19
PRK04922	433	tolB translocation protein TolB; Provisional	99.19
KOG1409|consensus	404		99.17
KOG1523|consensus	361		99.17
KOG1272|consensus	545		99.17
KOG4547|consensus	541		99.16
KOG4497|consensus	447		99.15
PRK02889	427	tolB translocation protein TolB; Provisional	99.14
KOG4190|consensus	1034		99.12
KOG2321|consensus	703		99.11
KOG4497|consensus	447		99.1
KOG1409|consensus	404		99.09
KOG2139|consensus	445		99.07
KOG2139|consensus	445		99.06
KOG0974|consensus	967		99.04
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.04
PRK04922	433	tolB translocation protein TolB; Provisional	99.01
KOG3881|consensus	412		99.01
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.98
KOG4547|consensus	541		98.98
PRK05137	435	tolB translocation protein TolB; Provisional	98.98
KOG3914|consensus	390		98.97
KOG0280|consensus	339		98.95
PRK02889	427	tolB translocation protein TolB; Provisional	98.95
KOG1354|consensus	433		98.95
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.93
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.91
PRK00178	430	tolB translocation protein TolB; Provisional	98.88
KOG4190|consensus	1034		98.86
KOG2111|consensus	346		98.85
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
KOG1064|consensus	2439		98.8
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.79
PRK01029	428	tolB translocation protein TolB; Provisional	98.79
KOG1064|consensus	2439		98.77
KOG2041|consensus	1189		98.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.73
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.72
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.68
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.66
PRK00178	430	tolB translocation protein TolB; Provisional	98.62
KOG2315|consensus	566		98.6
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.59
PRK04792	448	tolB translocation protein TolB; Provisional	98.56
KOG0882|consensus	558		98.55
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.49
KOG1912|consensus	1062		98.48
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.45
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.44
PRK01029	428	tolB translocation protein TolB; Provisional	98.43
KOG3914|consensus	390		98.41
KOG1645|consensus	463		98.36
KOG0309|consensus	1081		98.33
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.31
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.31
KOG0280|consensus	339		98.28
KOG4714|consensus	319		98.27
COG4946	668	Uncharacterized protein related to the periplasmic	98.26
KOG2695|consensus	425		98.24
KOG4532|consensus	344		98.22
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.21
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.21
KOG0309|consensus	1081		98.19
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.18
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.17
PRK04043	419	tolB translocation protein TolB; Provisional	98.16
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.14
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.12
KOG2041|consensus	1189		98.12
KOG2066|consensus	846		98.11
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.1
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.1
KOG2695|consensus	425		98.09
KOG2066|consensus	846		98.07
KOG0882|consensus	558		98.06
COG4946	668	Uncharacterized protein related to the periplasmic	98.02
KOG4532|consensus	344		98.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.97
KOG2114|consensus	933		97.97
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.96
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.95
KOG1832|consensus	1516		97.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.93
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.9
KOG1912|consensus	1062		97.87
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.86
KOG1645|consensus	463		97.84
KOG1920|consensus	1265		97.82
KOG2315|consensus	566		97.81
KOG4714|consensus	319		97.77
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.75
KOG2314|consensus	698		97.75
KOG1832|consensus	1516		97.73
PRK04043	419	tolB translocation protein TolB; Provisional	97.68
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.68
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.67
KOG1275|consensus	1118		97.66
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.58
KOG1275|consensus	1118		97.55
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.53
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.46
KOG2314|consensus	698		97.41
KOG2114|consensus	933		97.26
KOG4649|consensus	354		97.26
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.16
KOG3621|consensus	726		97.01
KOG4640|consensus	665		97.01
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.96
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.75
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.57
KOG3617|consensus	1416		96.55
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.47
KOG2444|consensus	238		96.46
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.43
PRK02888	635	nitrous-oxide reductase; Validated	96.41
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.4
PRK13616	591	lipoprotein LpqB; Provisional	96.26
KOG1008|consensus	783		96.24
KOG4640|consensus	665		96.23
KOG4649|consensus	354		96.22
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	96.08
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.07
KOG2395|consensus	644		96.03
KOG1920|consensus	1265		96.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	95.78
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	95.73
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.63
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.51
KOG1008|consensus	783		95.51
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	95.43
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.36
KOG2444|consensus	238		95.36
KOG3621|consensus	726		95.2
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	95.19
PRK13616	591	lipoprotein LpqB; Provisional	95.02
KOG3617|consensus	1416		95.01
KOG2395|consensus	644		94.82
PRK02888	635	nitrous-oxide reductase; Validated	94.81
KOG2079|consensus	1206		94.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	94.65
KOG4441|consensus	571		94.63
PHA02713	557	hypothetical protein; Provisional	94.6
KOG2079|consensus	1206		94.56
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.47
COG3391	381	Uncharacterized conserved protein [Function unknow	93.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.77
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.67
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.45
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	93.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	92.03
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.99
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	91.81
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.53
PRK10115	686	protease 2; Provisional	90.84
COG3391	381	Uncharacterized conserved protein [Function unknow	90.8
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	90.45
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	89.13
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.92
PHA03098	534	kelch-like protein; Provisional	88.2
COG5167	776	VID27 Protein involved in vacuole import and degra	87.89
KOG4499|consensus	310		87.88
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.8
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	87.52
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.84
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	86.57
KOG4441|consensus	571		86.35
KOG3616|consensus	1636		86.28
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	85.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.7
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	85.35
PHA02790	480	Kelch-like protein; Provisional	85.06
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.01
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	84.77
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.36
PHA02713	557	hypothetical protein; Provisional	82.07
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	81.6
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.44

>KOG0271|consensus

Probab=100.00  E-value=3.6e-47  Score=335.74  Aligned_cols=311  Identities=27%  Similarity=0.457  Sum_probs=263.1

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      -..+.||..+|-|++|+|+|..|||||-|.|+|+||++|...++++++|+.-|.+++++++...                
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~----------------  171 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKK----------------  171 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcch----------------
Confidence            3457899999999999999999999999999999999999999999999999999999887532                


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                 +.++..+|+|++|+-...                                                   
T Consensus       172 -----------iASG~~dg~I~lwdpktg---------------------------------------------------  189 (480)
T KOG0271|consen  172 -----------IASGSKDGSIRLWDPKTG---------------------------------------------------  189 (480)
T ss_pred             -----------hhccccCCeEEEecCCCC---------------------------------------------------
Confidence                       233345567777752210                                                   


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcC-----CCcEEEEEeCCCeEEEEECCCCceEEEEecC
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP-----GNEWFATGSADKIIKVWDLATGKLKLSLTGH  260 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h  260 (479)
                                             ...-+.+.||...|++++|.|     ...+||++|.||.++|||+..++++..+.+|
T Consensus       190 -----------------------~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH  246 (480)
T KOG0271|consen  190 -----------------------QQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH  246 (480)
T ss_pred             -----------------------CcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence                                   001135779999999999964     6789999999999999999999999999999


Q ss_pred             CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEE-----------eCCC------------
Q psy8895         261 VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTF-----------DNSG------------  317 (479)
Q Consensus       261 ~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~-----------~~~~------------  317 (479)
                      +.+|+|+.|-.+| +++++|.|++|++|+...+......  .++...|..++.           ++.+            
T Consensus       247 T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l--kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~  323 (480)
T KOG0271|consen  247 TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL--KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKK  323 (480)
T ss_pred             ccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh--cccchheeeeeccchhhhhccccccccccCCChHHHHHH
Confidence            9999999998766 8899999999999998765543222  233344444433           3333            


Q ss_pred             -------------CEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         318 -------------SRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       318 -------------~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                                   ..+++|+.|.++.+|+.....                  +++..+++++|.|..|++||.++|+.+.
T Consensus       324 Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la  403 (480)
T KOG0271|consen  324 ALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA  403 (480)
T ss_pred             HHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhh
Confidence                         359999999999999875432                  2456789999999999999999999999


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      +|.+|-.+|..++|+.|.++++++|.|. +++|++.+.++...++||.+.|.++.++||| .+++|+.|+.+++|.
T Consensus       404 sfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  404 SFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             hhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999995 9999999999999999999999999999999 899999999999994

>KOG0285|consensus

Probab=100.00  E-value=1.6e-44  Score=316.49  Aligned_cols=278  Identities=59%  Similarity=1.036  Sum_probs=253.3

Q ss_pred             hHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC
Q psy8895         194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH  273 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~  273 (479)
                      ......++++.|+.+|++.+.+.||.++|.|+++.|..++|++|+.|++|+|||+.+|+++.++.||...|+.+++|+..
T Consensus       126 ~k~~~~~~rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH  205 (460)
T KOG0285|consen  126 EKKASRMPRPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH  205 (460)
T ss_pred             hhccccCCCccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC
Confidence            34455678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------  339 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------  339 (479)
                      +++++++.|+.|+.||++..+.+..+  .++-++++|+...|.-..+++++.|.++++||.+....              
T Consensus       206 pYlFs~gedk~VKCwDLe~nkvIR~Y--hGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V  283 (460)
T KOG0285|consen  206 PYLFSAGEDKQVKCWDLEYNKVIRHY--HGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASV  283 (460)
T ss_pred             ceEEEecCCCeeEEEechhhhhHHHh--ccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeE
Confidence            99999999999999999987765443  56778999999999999999999999999999875422              


Q ss_pred             ---CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceE
Q psy8895         340 ---EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAII  416 (479)
Q Consensus       340 ---~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v  416 (479)
                         +....+++||.|++|++||++.++...++..|...|++++.+|...+||+++.|+++.|+++.|++++.+.+|.+.+
T Consensus       284 ~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~ii  363 (460)
T KOG0285|consen  284 MCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAII  363 (460)
T ss_pred             EeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccccccee
Confidence               22456899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEeEecCCCCCceEEeeehhhhc
Q psy8895         417 NSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYL  473 (479)
Q Consensus       417 ~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (479)
                      +++..+.|+++++|++.|.+.+||+++|..+|+.|...-.+--..+++.++-.|+.-
T Consensus       364 ntl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt  420 (460)
T KOG0285|consen  364 NTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT  420 (460)
T ss_pred             eeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence            999999999999999999999999999999999988775555566666777777654

>KOG0272|consensus

Probab=100.00  E-value=4.4e-43  Score=313.80  Aligned_cols=284  Identities=26%  Similarity=0.428  Sum_probs=249.4

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT  109 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (479)
                      .|-+.||....|++|++.|||||-+|.+++|+..+...+.+|.||...+.++.|.+...+.                   
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~-------------------  232 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDL-------------------  232 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCcc-------------------
Confidence            4778899999999999999999999999999999999999999999999999997763211                   


Q ss_pred             cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895         110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI  189 (479)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  189 (479)
                            .+.+...+|++++|+....                                                       
T Consensus       233 ------~lat~s~Dgtvklw~~~~e-------------------------------------------------------  251 (459)
T KOG0272|consen  233 ------NLATASADGTVKLWKLSQE-------------------------------------------------------  251 (459)
T ss_pred             ------ceeeeccCCceeeeccCCC-------------------------------------------------------
Confidence                  1122335577887764310                                                       


Q ss_pred             HHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEE
Q psy8895         190 IQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV  269 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~  269 (479)
                                          .+...+.||...|..++|+|+|++|+|+|.|.+=++||++++..+...+||...|.+++|
T Consensus       252 --------------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf  311 (459)
T KOG0272|consen  252 --------------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAF  311 (459)
T ss_pred             --------------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEe
Confidence                                001135689999999999999999999999999999999999998889999999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEe
Q psy8895         270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGS  349 (479)
Q Consensus       270 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs  349 (479)
                      ++||..++|||.|..-++||+++++++...  .++...|..|.|+|+|..+                         +|||
T Consensus       312 ~~DGSL~~tGGlD~~~RvWDlRtgr~im~L--~gH~k~I~~V~fsPNGy~l-------------------------ATgs  364 (459)
T KOG0272|consen  312 QPDGSLAATGGLDSLGRVWDLRTGRCIMFL--AGHIKEILSVAFSPNGYHL-------------------------ATGS  364 (459)
T ss_pred             cCCCceeeccCccchhheeecccCcEEEEe--cccccceeeEeECCCceEE-------------------------eecC
Confidence            999999999999999999999999877554  2466789999999987664                         6777


Q ss_pred             CCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-E
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-V  426 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  426 (479)
                      .|++++|||++..++++++..|..-|+.+.|+| .+.+|++++.|+ +++|...+..+++.+.||.+.|-++.+++|+ .
T Consensus       365 ~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~  444 (459)
T KOG0272|consen  365 SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQA  444 (459)
T ss_pred             CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCce
Confidence            888899999999899999999999999999999 688999999886 9999999999999999999999999999999 8


Q ss_pred             EEEEeCCCcEEEEe
Q psy8895         427 LVSGADNGTMCFWD  440 (479)
Q Consensus       427 l~sg~~dg~i~lWd  440 (479)
                      ++|++.|.++++|.
T Consensus       445 i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  445 IATSSFDRTIKLWR  458 (459)
T ss_pred             EEEeccCceeeecc
Confidence            99999999999995

>KOG0319|consensus

Probab=100.00  E-value=1.4e-40  Score=316.73  Aligned_cols=415  Identities=20%  Similarity=0.318  Sum_probs=296.9

Q ss_pred             CcccccCceEEEeec-ccceeEeeE--------------------------EeeecCCcccceEEEEEccCCc--eEEEe
Q psy8895           1 VWDLATGKLKLSLTG-HVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTID--VLITA   51 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g-~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~--~laSg   51 (479)
                      +|.+.+|+++..+-. |.+++--..                          +.+.|+||.+.|.++.|+|+-+  .|++|
T Consensus        88 v~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg  167 (775)
T KOG0319|consen   88 VWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASG  167 (775)
T ss_pred             EEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeec
Confidence            588888888777666 776665432                          4667899999999999999965  59999


Q ss_pred             cCCCeEEEEeecccce-EeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc---------------------
Q psy8895          52 GRDSTARVWDVRTKAN-VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT---------------------  109 (479)
Q Consensus        52 s~D~~vriWd~~t~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  109 (479)
                      +.|++||+||+++++. ++++..|.+.|+++.+.+++..     ++...-+.++.++..                     
T Consensus       168 ~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~-----~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l  242 (775)
T KOG0319|consen  168 ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLE-----LLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRL  242 (775)
T ss_pred             CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCce-----EEEeccCcEEEEeehhhhhhhheechhhheeeEEEe
Confidence            9999999999997765 8889999999999999877432     122222222222211                     


Q ss_pred             ---cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895         110 ---AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN  186 (479)
Q Consensus       110 ---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  186 (479)
                         .+..-.++-..+.+|.++.|+....+-.....-++  ...                +......+.....+..+...+
T Consensus       243 ~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~--~~e----------------~~~~~~~~~~~~~l~vtaeQn  304 (775)
T KOG0319|consen  243 REELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD--SEE----------------IDHLLAIESMSQLLLVTAEQN  304 (775)
T ss_pred             chhcCCcceEEEEecCCceEEEEecccchhhhhhccCC--chh----------------hhcceeccccCceEEEEccce
Confidence               00000112223334445555432211000000000  000                000000011111122222222


Q ss_pred             hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEc-CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895         187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE-PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR  265 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~  265 (479)
                      ..++.              ....++.+.+.|..+.|..++|- |+.+++|.+++...+|++++.+..+. .+.||+..|.
T Consensus       305 l~l~d--------------~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vl  369 (775)
T KOG0319|consen  305 LFLYD--------------EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVL  369 (775)
T ss_pred             EEEEE--------------ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhee
Confidence            11110              01234445677899999999985 67789999999999999999888776 8899999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccC--CCCCCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCC---
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNS-GSRLITTEADKTVKLYKEDDSAT---  339 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~---  339 (479)
                      +++...+|-+++|||.|+++++|.++.+.....  .....+.+.|.+++++.. ...+++++.|.++++|++...+.   
T Consensus       370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~  449 (775)
T KOG0319|consen  370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF  449 (775)
T ss_pred             eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence            999777788999999999999999854433211  112356677888887643 36899999999999999876211   


Q ss_pred             -----------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-E
Q psy8895         340 -----------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-I  395 (479)
Q Consensus       340 -----------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i  395 (479)
                                             ++..+++|||+|.+.+||+++....+.++.+|+..|.++.|+|..++++++|.|. |
T Consensus       450 ~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~Tv  529 (775)
T KOG0319|consen  450 PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTV  529 (775)
T ss_pred             cceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceE
Confidence                                   2346789999999999999999999999999999999999999999999999885 9


Q ss_pred             EEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         396 KQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++|.+.+..+++++.||...|....|-.++ .|+|++.||.|++|++++++|.+++...
T Consensus       530 KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H  588 (775)
T KOG0319|consen  530 KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAH  588 (775)
T ss_pred             EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhc
Confidence            999999999999999999999999887776 9999999999999999999998887544

>KOG0286|consensus

Probab=100.00  E-value=4.1e-39  Score=275.63  Aligned_cols=293  Identities=25%  Similarity=0.412  Sum_probs=239.2

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ...++++||.+.|.++.|++|.++|+|+|.||.+.|||.-|...++.+......|+.++|.++...+             
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~V-------------  112 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFV-------------  112 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeE-------------
Confidence            3467899999999999999999999999999999999999888888888888999999998765321             


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                        +.|.            -+....++++..                                       +..        
T Consensus       113 --AcGG------------LdN~Csiy~ls~---------------------------------------~d~--------  131 (343)
T KOG0286|consen  113 --ACGG------------LDNKCSIYPLST---------------------------------------RDA--------  131 (343)
T ss_pred             --EecC------------cCceeEEEeccc---------------------------------------ccc--------
Confidence              1110            000111111100                                       000        


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                        +                    ..-+..+.+.+|++.+.|..|.+ ...|+++|.|.+.-+||+++|+.+..|.+|.+.
T Consensus       132 --~--------------------g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD  188 (343)
T KOG0286|consen  132 --E--------------------GNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGD  188 (343)
T ss_pred             --c--------------------ccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCccc
Confidence              0                    00123356889999999999987 557999999999999999999999999999999


Q ss_pred             EEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         264 VRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       264 v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      |.+++++| +++.+++|+.|+..++||++.+.+...  ...+++.|..+.|.|+|..+                      
T Consensus       189 V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt--F~ghesDINsv~ffP~G~af----------------------  244 (343)
T KOG0286|consen  189 VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT--FEGHESDINSVRFFPSGDAF----------------------  244 (343)
T ss_pred             EEEEecCCCCCCeEEecccccceeeeeccCcceeEe--ecccccccceEEEccCCCee----------------------
Confidence            99999999 999999999999999999998765543  35678899999999998765                      


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEcc--CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTN--HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                         ++||.|+++|+||++..+.+..+..  -...|++++||..|++|.++..| ++.+||.-.++.+..|.||...|+||
T Consensus       245 ---atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl  321 (343)
T KOG0286|consen  245 ---ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL  321 (343)
T ss_pred             ---eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE
Confidence               5666677777778887777776652  23579999999999999888777 59999999999999999999999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEe
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ..+||| .++|||.|.++|||.
T Consensus       322 ~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  322 GVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EECCCCcEEEecchhHheeecC
Confidence            999999 899999999999994

>KOG0271|consensus

Probab=100.00  E-value=6.6e-40  Score=289.82  Aligned_cols=292  Identities=26%  Similarity=0.416  Sum_probs=240.9

Q ss_pred             eEEEeecccceeEeeEE--------------------------eeecCCcccceEEEEEccCCceEEEecCCCeEEEEee
Q psy8895           9 LKLSLTGHVGSVRGLTV--------------------------IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDV   62 (479)
Q Consensus         9 ~~~~~~g~~~~v~~~~~--------------------------~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~   62 (479)
                      +-..++||.+.|-++.+                          ..+.+||..=|.|++|+|||+.||||+.||+|++||.
T Consensus       107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            33467889888877642                          4456899999999999999999999999999999999


Q ss_pred             cccceEe-eecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccc
Q psy8895          63 RTKANVY-TLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLN  141 (479)
Q Consensus        63 ~t~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  141 (479)
                      .+|+.+. .|.||+..+++++|.+-+..++.+.                      +.+...++++++|+.+..       
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~----------------------las~skDg~vrIWd~~~~-------  237 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRR----------------------LASSSKDGSVRIWDTKLG-------  237 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccc----------------------eecccCCCCEEEEEccCc-------
Confidence            9998765 7899999999999977655444332                      122334577888875321       


Q ss_pred             hhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCcc
Q psy8895         142 LQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW  221 (479)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  221 (479)
                                                                                          .....+.||+.+
T Consensus       238 --------------------------------------------------------------------~~~~~lsgHT~~  249 (480)
T KOG0271|consen  238 --------------------------------------------------------------------TCVRTLSGHTAS  249 (480)
T ss_pred             --------------------------------------------------------------------eEEEEeccCccc
Confidence                                                                                123457899999


Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC-----------CC-----------------
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP-----------RH-----------------  273 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~-----------~~-----------------  273 (479)
                      |+|+++-.+ .+|+|||.|++|++|+...|.+...+++|...|+.++.+.           .+                 
T Consensus       250 VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY  328 (480)
T KOG0271|consen  250 VTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY  328 (480)
T ss_pred             eEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence            999999754 4899999999999999999999999999999999999872           22                 


Q ss_pred             --------CEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------
Q psy8895         274 --------PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------  338 (479)
Q Consensus       274 --------~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------  338 (479)
                              ..+++|++|.++.+|+....+.+... ..++..-|..+.|+|++.++++++.|+.|++|+-+...       
T Consensus       329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRG  407 (480)
T KOG0271|consen  329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRG  407 (480)
T ss_pred             HHhhccCcceeEEecCCceEEEecccccccchhh-hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhh
Confidence                    24999999999999998654433222 24566779999999999999999999999999977653       


Q ss_pred             ----------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEe
Q psy8895         339 ----------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWK  399 (479)
Q Consensus       339 ----------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~  399 (479)
                                ..++.++++||.|.++++||+++.+....+.+|.+.|.+++|+|||..+++++.|+ +++|.
T Consensus       408 Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  408 HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                      24567899999999999999999999999999999999999999999999999997 78884

>KOG0319|consensus

Probab=100.00  E-value=1.1e-38  Score=303.71  Aligned_cols=415  Identities=23%  Similarity=0.318  Sum_probs=279.9

Q ss_pred             CcccccCceEEEeecccceeEeeEE-----------------------------eeecCCcccceEEEEEccCCceEEEe
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLTV-----------------------------IRHYHGHLSSVNTISLHPTIDVLITA   51 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~~-----------------------------~~~~~gH~~~V~~l~~sp~g~~laSg   51 (479)
                      |||+..+.+.+.|.||.+.|-++.+                             +.+..+|.+.|++|+|++|+.-++++
T Consensus       131 VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  131 VWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             EEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEe
Confidence            6999999999999999999988742                             33457999999999999999999999


Q ss_pred             cCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhh
Q psy8895          52 GRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQL  131 (479)
Q Consensus        52 s~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  131 (479)
                      |+|..+.|||+.+.+.+.++.--. .+.++.+..+..  |.+       ...++..|..+....+-....   .+ ++..
T Consensus       211 ~RDkvi~vwd~~~~~~l~~lp~ye-~~E~vv~l~~~~--~~~-------~~~~~TaG~~g~~~~~d~es~---~~-~~~~  276 (775)
T KOG0319|consen  211 GRDKVIIVWDLVQYKKLKTLPLYE-SLESVVRLREEL--GGK-------GEYIITAGGSGVVQYWDSESG---KC-VYKQ  276 (775)
T ss_pred             ccCcEEEEeehhhhhhhheechhh-heeeEEEechhc--CCc-------ceEEEEecCCceEEEEecccc---hh-hhhh
Confidence            999999999998877777665432 334444433311  111       011222222222111110000   00 0000


Q ss_pred             hhhhhhcccch---hhhhcc-------ceeeEEeeccccc-----cceeccccccccccccccc-cCCCCchhHHHHHhH
Q psy8895         132 QIIQEQCFLNL---QEVQRH-------SVHTLVFRSLKRT-----HDMFISCQELVPSTENQLV-PTTASNTQIIQQAKA  195 (479)
Q Consensus       132 ~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~  195 (479)
                      +....+....+   ....+.       .+..+........     +..-+....+.-+.++.++ ++......+++    
T Consensus       277 ~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~----  352 (775)
T KOG0319|consen  277 RQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYT----  352 (775)
T ss_pred             ccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEe----
Confidence            00000000000   000000       0000000000000     0000000111111122222 22111111110    


Q ss_pred             hcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc----eEEEEecCCcCEEEEEEcC
Q psy8895         196 KALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK----LKLSLTGHVGSVRGLTVSP  271 (479)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~----~~~~~~~h~~~v~~v~~~~  271 (479)
                                 .+.....++.||.+.|.++....+|.+|+|||.|.++++|.++++.    ++....+|++.|.+++++.
T Consensus       353 -----------~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~  421 (775)
T KOG0319|consen  353 -----------LPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK  421 (775)
T ss_pred             -----------cCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecc
Confidence                       0111123788999999999977788999999999999999885443    3456789999999999977


Q ss_pred             CC-CEEEEEECCCcEEEEECCCCCccc-------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----
Q psy8895         272 RH-PYLFSCGDDRTVKCWDLEYNKAPV-------QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----  339 (479)
Q Consensus       272 ~~-~~l~s~~~d~~i~~wd~~~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----  339 (479)
                      .+ .+++++|.|.++++|++...+...       +.....|...|.++++.|+.+.+++|+.|++.++|++++...    
T Consensus       422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vL  501 (775)
T KOG0319|consen  422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVL  501 (775)
T ss_pred             cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEe
Confidence            54 488999999999999997632211       112234566799999999999999999999999999885431    


Q ss_pred             -------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE
Q psy8895         340 -------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF  405 (479)
Q Consensus       340 -------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~  405 (479)
                                   ...+.++|+|.|+||+||.+.+..++++|.||+.+|..+.|-.++..|++++.|+ +++|+++++++
T Consensus       502 sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC  581 (775)
T KOG0319|consen  502 SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC  581 (775)
T ss_pred             eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence                         3456899999999999999999999999999999999999988887777777665 99999999999


Q ss_pred             EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         406 IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       406 ~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      ..++.+|.+.|+++..++.. +++||+.||.|.+|.-.|.
T Consensus       582 ~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  582 EMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             hhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            99999999999999999888 9999999999999986654

>KOG0295|consensus

Probab=100.00  E-value=7.8e-39  Score=281.55  Aligned_cols=304  Identities=24%  Similarity=0.421  Sum_probs=252.7

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      ++..+.||..+|+.+-|||+-..+|+++.|.+|++||..||+.+..++||.+++..+.|.+...+     ++..+     
T Consensus       100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~-----l~tcS-----  169 (406)
T KOG0295|consen  100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKY-----LATCS-----  169 (406)
T ss_pred             chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccE-----EEecC-----
Confidence            45567899999999999999999999999999999999999999999999999999998765421     11111     


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                                       .+-.++.|+...-                                                  
T Consensus       170 -----------------sDl~~~LWd~~~~--------------------------------------------------  182 (406)
T KOG0295|consen  170 -----------------SDLSAKLWDFDTF--------------------------------------------------  182 (406)
T ss_pred             -----------------CccchhheeHHHH--------------------------------------------------
Confidence                             1112444443210                                                  


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV  264 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v  264 (479)
                                              .+..+.+.+|...|.++.|-|.|.+|+|++.|.+|+.|++.+|.+++++.+|...|
T Consensus       183 ------------------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewv  238 (406)
T KOG0295|consen  183 ------------------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWV  238 (406)
T ss_pred             ------------------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhE
Confidence                                    01112356899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCe
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP  344 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  344 (479)
                      +.+..+.||..+++++.|.++++|-+++.++....  .+++..+.|++|.|...+--+..          ........+.
T Consensus       239 r~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l--R~hEh~vEci~wap~~~~~~i~~----------at~~~~~~~~  306 (406)
T KOG0295|consen  239 RMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL--REHEHPVECIAWAPESSYPSISE----------ATGSTNGGQV  306 (406)
T ss_pred             EEEEecCCeeEEEecCCCceEEEEEeccchhhhhh--hccccceEEEEecccccCcchhh----------ccCCCCCccE
Confidence            99999999999999999999999999887554333  35677899999988643211100          0011123467


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      +.++|.|++|++||+.++.++.++.+|..-|+.++|+|.|++++++.+|+ +++||+.++++.+++..|...|+++.|..
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence            89999999999999999999999999999999999999999999999986 99999999999999999999999999998


Q ss_pred             CC-EEEEEeCCCcEEEEec
Q psy8895         424 EG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       424 ~~-~l~sg~~dg~i~lWd~  441 (479)
                      +. +++||+-|.++++|+-
T Consensus       387 ~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CCceEEeccccceeeeeec
Confidence            87 9999999999999973

>KOG0279|consensus

Probab=100.00  E-value=2.3e-37  Score=263.36  Aligned_cols=219  Identities=22%  Similarity=0.371  Sum_probs=189.6

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+.||...|..+..++||++++|+|.|+++++||+.+++....|.+|...|.+++|++|.+.+++|+.|++|++|++...
T Consensus        58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~  137 (315)
T KOG0279|consen   58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV  137 (315)
T ss_pred             eeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999998643


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK  373 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~  373 (479)
                      .. .......+...|.|+.|+|+..                       ...++++++|++|++||+++.+....+.+|..
T Consensus       138 ck-~t~~~~~~~~WVscvrfsP~~~-----------------------~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~  193 (315)
T KOG0279|consen  138 CK-YTIHEDSHREWVSCVRFSPNES-----------------------NPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG  193 (315)
T ss_pred             EE-EEEecCCCcCcEEEEEEcCCCC-----------------------CcEEEEccCCceEEEEccCCcchhhccccccc
Confidence            32 2222222367899999999742                       24578999999999999999999999999999


Q ss_pred             ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         374 SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      .++.+++||||.++++|+.|. +.+||++.++.++.+ +|...|.+++|+|+.+.+....+..|+|||+.+++++..+.+
T Consensus       194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~  272 (315)
T KOG0279|consen  194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKL  272 (315)
T ss_pred             cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccc
Confidence            999999999999999999885 999999999998776 477899999999999655566677899999999998887765


Q ss_pred             eEecC
Q psy8895         453 RCVSG  457 (479)
Q Consensus       453 ~~~~~  457 (479)
                      -.+..
T Consensus       273 d~~g~  277 (315)
T KOG0279|consen  273 DGIGP  277 (315)
T ss_pred             ccccc
Confidence            54433

>KOG0279|consensus

Probab=100.00  E-value=2.3e-36  Score=257.31  Aligned_cols=201  Identities=27%  Similarity=0.446  Sum_probs=168.0

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC--CcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH--VGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      +.|.||...|.+++|++|...|+|||.|++|++|+... .+..++..+  .+.|.|+.|+|+  .+.++++|.|+++|+|
T Consensus        99 ~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW  177 (315)
T KOG0279|consen   99 RRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW  177 (315)
T ss_pred             EEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Confidence            35778999999999999999999999999999999865 455555443  789999999998  7899999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      |+++.+..  ....++.+.+..+.++|+|...                         ++|+.||.+.+||++.++.++++
T Consensus       178 nl~~~~l~--~~~~gh~~~v~t~~vSpDGslc-------------------------asGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  178 NLRNCQLR--TTFIGHSGYVNTVTVSPDGSLC-------------------------ASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             ccCCcchh--hccccccccEEEEEECCCCCEE-------------------------ecCCCCceEEEEEccCCceeEec
Confidence            99865543  2335677888999999988764                         56777888999999999998888


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec----CC-----cceEEEEEEcCCC-EEEEEeCCCcEEE
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP----GH-----NAIINSICVNNEG-VLVSGADNGTMCF  438 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~----~h-----~~~v~~l~~~~~~-~l~sg~~dg~i~l  438 (479)
                       .|...|.+++|+|..+.|+.+....|+|||..++.++..+.    +.     .....++++++|| .|.+|..|+.|++
T Consensus       231 -~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv  309 (315)
T KOG0279|consen  231 -EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRV  309 (315)
T ss_pred             -cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEE
Confidence             47889999999999999999988899999999988776553    22     2245667889999 8999999999999


Q ss_pred             EecC
Q psy8895         439 WDWR  442 (479)
Q Consensus       439 Wd~~  442 (479)
                      |.+.
T Consensus       310 ~qv~  313 (315)
T KOG0279|consen  310 WQVA  313 (315)
T ss_pred             EEee
Confidence            9874

>KOG0291|consensus

Probab=100.00  E-value=5.4e-36  Score=285.80  Aligned_cols=402  Identities=19%  Similarity=0.295  Sum_probs=279.4

Q ss_pred             eeEeeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccce--EeeecccccceEEEEecCCCCccccceEE
Q psy8895          19 SVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVL   96 (479)
Q Consensus        19 ~v~~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~   96 (479)
                      +.....+.++|.||.+.|.+|.|+.|.++|++||.|.++|||+++.-+.  .+.+.+|++.|.++.|..+...     +.
T Consensus       131 ~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~-----l~  205 (893)
T KOG0291|consen  131 EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLD-----LY  205 (893)
T ss_pred             ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcce-----EE
Confidence            3444567889999999999999999999999999999999999987776  6678899999999988665321     11


Q ss_pred             eccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccc----eeccccccc
Q psy8895          97 LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHD----MFISCQELV  172 (479)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  172 (479)
                      .-+-++.++++.-.      ..+....+..+-.+-...    ......... ..++..+....+.+-    ..+.+..+.
T Consensus       206 tvskdG~l~~W~~~------~~P~~~~~~~kd~eg~~d----~~~~~~~Ee-k~~~~~~~k~~k~~ln~~~~kvtaa~fH  274 (893)
T KOG0291|consen  206 TVSKDGALFVWTCD------LRPPELDKAEKDEEGSDD----EEMDEDGEE-KTHKIFWYKTKKHYLNQNSSKVTAAAFH  274 (893)
T ss_pred             EEecCceEEEEEec------CCCccccccccccccccc----ccccccchh-hhcceEEEEEEeeeecccccceeeeecc
Confidence            11222222222211      000000000000000000    000000000 011111111100000    011111111


Q ss_pred             cccccccccCCCCc-hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCC-CeEEEEECCC
Q psy8895         173 PSTENQLVPTTASN-TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD-KIIKVWDLAT  250 (479)
Q Consensus       173 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d-~~i~iWd~~~  250 (479)
                      +.. +.++..-.+. ..+..              -+.+.+.+.+.--...|..++|+..|++||.||.. |.+.||+.++
T Consensus       275 ~~t-~~lvvgFssG~f~Lye--------------lP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqs  339 (893)
T KOG0291|consen  275 KGT-NLLVVGFSSGEFGLYE--------------LPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQS  339 (893)
T ss_pred             CCc-eEEEEEecCCeeEEEe--------------cCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeec
Confidence            111 1111111111 11110              12355666666666789999999999999998875 8999999999


Q ss_pred             CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895         251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK  330 (479)
Q Consensus       251 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  330 (479)
                      ...+...++|...+.+++++|||.+++||++||.||+||...+-+....  .++.+.+..+.|...++.+++++-||+++
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~~~g~~llssSLDGtVR  417 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFTARGNVLLSSSLDGTVR  417 (893)
T ss_pred             cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe--ccCCCceEEEEEEecCCEEEEeecCCeEE
Confidence            9999999999999999999999999999999999999999887776544  46788999999999999999999999999


Q ss_pred             EEeCCCCCC------------------CCCCeEEEEeCCC-cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc
Q psy8895         331 LYKEDDSAT------------------EESHPVITGSHDC-TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS  391 (479)
Q Consensus       331 ~~~~~~~~~------------------~~~~~l~sgs~d~-~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s  391 (479)
                      .||+....+                  +.+..+..|+.|. .|.+|++.+|+.+-.+.+|+++|.+++|+|++..|+++|
T Consensus       418 AwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S  497 (893)
T KOG0291|consen  418 AWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS  497 (893)
T ss_pred             eeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence            999875432                  1234566777776 699999999999999999999999999999999999999


Q ss_pred             CCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         392 PDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       392 ~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      -|+ |++||+-.......--.+...|..++|.|+| .|+.+..||.|.+||.+.+.....+..|
T Consensus       498 WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idgr  561 (893)
T KOG0291|consen  498 WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGR  561 (893)
T ss_pred             ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccch
Confidence            885 9999985543322223356678999999999 8999999999999999988777555433

>KOG0315|consensus

Probab=100.00  E-value=4.4e-36  Score=251.47  Aligned_cols=287  Identities=21%  Similarity=0.341  Sum_probs=226.9

Q ss_pred             CceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccc
Q psy8895          45 IDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFG  124 (479)
Q Consensus        45 g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (479)
                      .-+|||+|.|.|||+|.+.||.+..+++-..+.|..+...++....               +.+             ...
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~L---------------Aaa-------------~~q   61 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDL---------------AAA-------------GNQ   61 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchh---------------hhc-------------cCC
Confidence            3689999999999999999999999998767777777665543221               000             112


Q ss_pred             cccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCC
Q psy8895         125 TIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQ  204 (479)
Q Consensus       125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  204 (479)
                      .||++|++...                                                                     
T Consensus        62 hvRlyD~~S~n---------------------------------------------------------------------   72 (311)
T KOG0315|consen   62 HVRLYDLNSNN---------------------------------------------------------------------   72 (311)
T ss_pred             eeEEEEccCCC---------------------------------------------------------------------
Confidence            34444432100                                                                     


Q ss_pred             CCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         205 WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       205 ~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                          ..+..++.+|++.|.++.|..+|+++++||.||++||||++...+...++ |..+|+++..+|+...|++|..+|.
T Consensus        73 ----p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~  147 (311)
T KOG0315|consen   73 ----PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGN  147 (311)
T ss_pred             ----CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCc
Confidence                01234678999999999999999999999999999999999966655554 7799999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      |++||+....+..+.. .+....|.++...|+|+.++.+...|+..+|++-....                   ...-++
T Consensus       148 irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~-------------------~s~l~P  207 (311)
T KOG0315|consen  148 IRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQT-------------------ASELEP  207 (311)
T ss_pred             EEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCc-------------------cccceE
Confidence            9999998765443321 23446788999999999988887777777776543110                   112356


Q ss_pred             EEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC-eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         365 LCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG-KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +..++.|.+.+..+-+|||.++||+++.|. +++|+..+. +.-..+.+|..+++..+||.|+ +|+||+.|+++|+||+
T Consensus       208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~  287 (311)
T KOG0315|consen  208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL  287 (311)
T ss_pred             hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence            777889999999999999999999999885 999999887 6667889999999999999999 9999999999999999


Q ss_pred             CCCeEEEEEEEe
Q psy8895         442 RTGYNFQRLQVR  453 (479)
Q Consensus       442 ~~~~~~~~~~~~  453 (479)
                      ..|+.++.++.+
T Consensus       288 ~~~k~v~qy~gh  299 (311)
T KOG0315|consen  288 SAGKEVRQYQGH  299 (311)
T ss_pred             ccCceeeecCCc
Confidence            999988776544

>KOG0318|consensus

Probab=100.00  E-value=3.5e-35  Score=269.85  Aligned_cols=378  Identities=19%  Similarity=0.274  Sum_probs=272.2

Q ss_pred             cCceEEEeecccceeEeeE---------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEE
Q psy8895           6 TGKLKLSLTGHVGSVRGLT---------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTAR   58 (479)
Q Consensus         6 ~~~~~~~~~g~~~~v~~~~---------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vr   58 (479)
                      +|.-+-.++||...+.+..                           +-.+++.|..-|+|++|+|||+++||+|.||+|.
T Consensus       136 SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  136 SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence            4566677899999888764                           3445678999999999999999999999999999


Q ss_pred             EEeecccceEeeec---ccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhh
Q psy8895          59 VWDVRTKANVYTLT---GHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQ  135 (479)
Q Consensus        59 iWd~~t~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  135 (479)
                      |+|-.+|+.+..+.   +|++++.+++++++..+.     +..                      ..+.++|+|+.....
T Consensus       216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-----~T~----------------------SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-----LTV----------------------SADKTIKIWDVSTNS  268 (603)
T ss_pred             EEcCCCccEEEEecCCCCccccEEEEEECCCCceE-----EEe----------------------cCCceEEEEEeeccc
Confidence            99999999999998   899999999999887552     212                      234577888765321


Q ss_pred             hhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC-CchhHHHHHhHhcCCCCCCCCCCcceeEEE
Q psy8895         136 EQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA-SNTQIIQQAKAKALPMPKPQWHAPWKLYRV  214 (479)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (479)
                      -.  .           +.....  ...+..+   .+.+. +..++..+. +....+.              .......++
T Consensus       269 lv--~-----------t~~~~~--~v~dqqv---G~lWq-kd~lItVSl~G~in~ln--------------~~d~~~~~~  315 (603)
T KOG0318|consen  269 LV--S-----------TWPMGS--TVEDQQV---GCLWQ-KDHLITVSLSGTINYLN--------------PSDPSVLKV  315 (603)
T ss_pred             eE--E-----------EeecCC--chhceEE---EEEEe-CCeEEEEEcCcEEEEec--------------ccCCChhhe
Confidence            00  0           000000  0000110   01112 112222111 1111110              001124467


Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +.||...|++++.+|++++|+||+.||.|.-||..+|..-... ++|...|..++.+..+ .++++|.|.++++.++...
T Consensus       316 i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~  394 (603)
T KOG0318|consen  316 ISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDN  394 (603)
T ss_pred             ecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccC
Confidence            8999999999999999999999999999999999988664332 7899999999988655 5789999999999988644


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-------------CCCCCCeEEEEeCCCcEEEEECC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS-------------ATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-------------~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      ....... .....+...++..+++..++..+.++.+.+-+....             ..++...++.|++|+.|++|.+.
T Consensus       395 ~~t~~~~-~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~  473 (603)
T KOG0318|consen  395 GYTKSEV-VKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS  473 (603)
T ss_pred             cccccce-eecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEec
Confidence            3322110 112233447777888777777777666655443321             12345678999999999999998


Q ss_pred             CCee--EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE-eeecCCcceEEEEEEcCCC-EEEEEeCCCc
Q psy8895         361 AGKS--LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI-QNLPGHNAIINSICVNNEG-VLVSGADNGT  435 (479)
Q Consensus       361 ~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~-~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~  435 (479)
                      ....  ...+..|+.+|+.+++|||+.+||++... ++.+||..+.+.. ..+.-|.+.|+|++++|+. ++||||.|-.
T Consensus       474 g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~  553 (603)
T KOG0318|consen  474 GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTN  553 (603)
T ss_pred             CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccce
Confidence            7543  33456799999999999999999999876 4999999888763 3456699999999999999 8999999999


Q ss_pred             EEEEecCCCe
Q psy8895         436 MCFWDWRTGY  445 (479)
Q Consensus       436 i~lWd~~~~~  445 (479)
                      |.||+++...
T Consensus       554 Viiysv~kP~  563 (603)
T KOG0318|consen  554 VIIYSVKKPA  563 (603)
T ss_pred             EEEEEccChh
Confidence            9999998653

>KOG0263|consensus

Probab=100.00  E-value=1.8e-36  Score=291.57  Aligned_cols=206  Identities=29%  Similarity=0.529  Sum_probs=188.7

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +++.||.++|...+|+|+.++|+++|.|+++|+|.+.+..+...++||..+|+++.|+|.|-+++|+|.|++.++|....
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ..+...  ..++.+.+.|+.|+|+..++                         ++||.|.+||+||+.+|..++.|.||.
T Consensus       525 ~~PlRi--faghlsDV~cv~FHPNs~Y~-------------------------aTGSsD~tVRlWDv~~G~~VRiF~GH~  577 (707)
T KOG0263|consen  525 NKPLRI--FAGHLSDVDCVSFHPNSNYV-------------------------ATGSSDRTVRLWDVSTGNSVRIFTGHK  577 (707)
T ss_pred             CCchhh--hcccccccceEEECCccccc-------------------------ccCCCCceEEEEEcCCCcEEEEecCCC
Confidence            544332  24567789999999987664                         567778899999999999999999999


Q ss_pred             CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ++|.+++|||+|.+|++|+.|. |++||+.+++++..+.+|.+.|.++.|+.|| .||+||.|.+|++||+..-.
T Consensus       578 ~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  578 GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9999999999999999999986 9999999999999999999999999999999 99999999999999987543

>KOG0306|consensus

Probab=100.00  E-value=9.9e-36  Score=283.90  Aligned_cols=433  Identities=22%  Similarity=0.330  Sum_probs=282.3

Q ss_pred             CcccccCceEEEeecccceeEeeEE--------------------------eeecCCcccceEEEEEccCCceEEEecCC
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLTV--------------------------IRHYHGHLSSVNTISLHPTIDVLITAGRD   54 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~~--------------------------~~~~~gH~~~V~~l~~sp~g~~laSgs~D   54 (479)
                      ||++.++....+|+||...|+.+.+                          +..++||.+.|+..-|..+.++++|.|.|
T Consensus        91 if~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKD  170 (888)
T KOG0306|consen   91 IFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKD  170 (888)
T ss_pred             eeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccC
Confidence            6888888888899999999996642                          33478999999999999989999999999


Q ss_pred             CeEEEEeecccceEeeecccccceEEEEecCCCC-----ccccceEEec-----------------------cccE-EEE
Q psy8895          55 STARVWDVRTKANVYTLTGHTNTIASVVTQASEP-----QVGTKTVLLE-----------------------SCER-IMF  105 (479)
Q Consensus        55 ~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~-----~~~~~~~~~~-----------------------~~~~-~~~  105 (479)
                      +.||+||+++..+..+.-.|.+.+..+++....-     .....++-++                       +-++ +-+
T Consensus       171 s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l  250 (888)
T KOG0306|consen  171 SMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINL  250 (888)
T ss_pred             ceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEE
Confidence            9999999999999999999999988887654100     0000111110                       0000 000


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccc---hhhhhccceeeEE--------------eeccccccceeccc
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLN---LQEVQRHSVHTLV--------------FRSLKRTHDMFISC  168 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~  168 (479)
                      +.......+.   ..+.+..+..+.+...++....-   +....+.......              +..+...+.+....
T Consensus       251 ~~d~s~r~~~---c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~d  327 (888)
T KOG0306|consen  251 VTDFSDRFLV---CQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFD  327 (888)
T ss_pred             eecCcccEEE---EecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEE
Confidence            0000000000   01111122222221111000000   0000000000000              00000000000000


Q ss_pred             cccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCccee-EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEE
Q psy8895         169 QELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKL-YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD  247 (479)
Q Consensus       169 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd  247 (479)
                      .......++.++. ...+...+...... .+.    -..+.+. .-.+.||...|.+++++.+...++||+ .+.++||+
T Consensus       328 v~~~~~~~~~lv~-l~nNtv~~ysl~~s-~~~----~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn  400 (888)
T KOG0306|consen  328 VTPSGGTENTLVL-LANNTVEWYSLENS-GKT----SPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWN  400 (888)
T ss_pred             EEecCCcceeEEE-eecCceEEEEeccC-CCC----CccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEE
Confidence            0000011112221 11111111000000 000    0011111 124668999999999998877777765 46789999


Q ss_pred             CCCCceEEE----------------------------------------EecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         248 LATGKLKLS----------------------------------------LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       248 ~~~~~~~~~----------------------------------------~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      ..+.+++.+                                        +++|.+.|++++.+||+..+++||.|++|++
T Consensus       401 ~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkf  480 (888)
T KOG0306|consen  401 RDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKF  480 (888)
T ss_pred             ccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEE
Confidence            887665433                                        3579999999999999999999999999999


Q ss_pred             EECCCCCc----------ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CC
Q psy8895         288 WDLEYNKA----------PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TE  340 (479)
Q Consensus       288 wd~~~~~~----------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~  340 (479)
                      ||.+....          .......+-+..+.|+.++|++++++++--|.++++|-++...                 ..
T Consensus       481 Wdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~  560 (888)
T KOG0306|consen  481 WDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP  560 (888)
T ss_pred             EeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence            99742111          0011123345679999999999999999999999999877532                 35


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                      ++..++|||.|.+|++|-+.-|.+-+.+-+|+++|+++.|-|..++|.+++.|. ++.||-..-+.++.+.+|...|+|+
T Consensus       561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL  640 (888)
T KOG0306|consen  561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL  640 (888)
T ss_pred             CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence            678899999999999999999999999999999999999999999999998885 9999999999999999999999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      +++|+| +++|+|.|.+||+|+...
T Consensus       641 av~~~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  641 AVSPNGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             EEcCCCCeEEeccCCceeEeeeccC
Confidence            999999 999999999999999654

>KOG0272|consensus

Probab=100.00  E-value=5.6e-36  Score=268.34  Aligned_cols=236  Identities=26%  Similarity=0.403  Sum_probs=213.0

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEECCCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .|-..+|..+.|+++++.|+|||.+|.+++|+..+...+.++.+|...+.++.|+|.  +..++||+.||++++|++...
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e  251 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE  251 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence            356789999999999999999999999999999999999999999999999999997  568999999999999999765


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTIRL  356 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v~i  356 (479)
                      .+....  .++...|..++|+|+|+++.+++.|.+-++||.....                 ..++..++||+.|..-||
T Consensus       252 ~~l~~l--~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv  329 (459)
T KOG0272|consen  252 TPLQDL--EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV  329 (459)
T ss_pred             cchhhh--hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence            443322  3466789999999999999999999999999987642                 235567899999999999


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcC-CC-EEEEEeCC
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNN-EG-VLVSGADN  433 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~-~~-~l~sg~~d  433 (479)
                      ||+++++++..+.+|...|.+++|+|+|+.+|+++.|+ +++||+.....++++++|...|+.++|+| .| +|+|+|.|
T Consensus       330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD  409 (459)
T KOG0272|consen  330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD  409 (459)
T ss_pred             eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence            99999999999999999999999999999999999886 99999998888999999999999999998 45 89999999


Q ss_pred             CcEEEEecCCCeEEEEEEEe
Q psy8895         434 GTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       434 g~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++++||.-++..++++++..
T Consensus       410 ~t~kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  410 NTVKIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             cceeeecCCCcccchhhcCC
Confidence            99999999999998887443

>KOG0285|consensus

Probab=100.00  E-value=2.1e-35  Score=259.23  Aligned_cols=289  Identities=25%  Similarity=0.474  Sum_probs=237.2

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ++.+.+.||.+=|+|+++.|-+.+|+|||.|++++|||+.+|+...++.||...|..++++...|+              
T Consensus       142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpY--------------  207 (460)
T KOG0285|consen  142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPY--------------  207 (460)
T ss_pred             eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCce--------------
Confidence            456678999999999999999999999999999999999999999999999999999988776654              


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                      +|.             .+.++.++-||+..++                                                
T Consensus       208 lFs-------------~gedk~VKCwDLe~nk------------------------------------------------  226 (460)
T KOG0285|consen  208 LFS-------------AGEDKQVKCWDLEYNK------------------------------------------------  226 (460)
T ss_pred             EEE-------------ecCCCeeEEEechhhh------------------------------------------------
Confidence            122             2344556666653210                                                


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                           +                      ++...||-..|.|+++.|.-..|++|+.|.++|+||+++...+..+.||..+
T Consensus       227 -----v----------------------IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~  279 (460)
T KOG0285|consen  227 -----V----------------------IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP  279 (460)
T ss_pred             -----h----------------------HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence                 0                      1123589999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      |..+.+.|..+.+++||.|++|++||++.++.....  ..+...+.++..+|....+++++.|                 
T Consensus       280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl--t~hkksvral~lhP~e~~fASas~d-----------------  340 (460)
T KOG0285|consen  280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL--THHKKSVRALCLHPKENLFASASPD-----------------  340 (460)
T ss_pred             ceeEEeecCCCceEEecCCceEEEeeeccCceeEee--ecccceeeEEecCCchhhhhccCCc-----------------
Confidence            999999998889999999999999999877654332  2345567888888876665554443                 


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee-----cC---Ccce
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL-----PG---HNAI  415 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~-----~~---h~~~  415 (479)
                               .|+-|++..+..+..+.+|..-|++++.+.|+.+++++..+.+..||..+|...+..     +|   ....
T Consensus       341 ---------nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag  411 (460)
T KOG0285|consen  341 ---------NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG  411 (460)
T ss_pred             ---------cceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence                     478899999998999999999999999999998887777777999999888654433     12   2346


Q ss_pred             EEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         416 INSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       416 v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      |.+.||...+ .|+||..|++|++|.-.
T Consensus       412 I~as~fDktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  412 IFASCFDKTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eeEEeecccCceEEeccCCcceEEEecc
Confidence            8888999888 99999999999999854

>KOG0296|consensus

Probab=100.00  E-value=1.1e-33  Score=249.35  Aligned_cols=313  Identities=19%  Similarity=0.291  Sum_probs=247.3

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      +.+|.+|+++|.+++.||+.+++||||.|....||++.+|..+..+.+|+++|+++.|+.++..               +
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdgtl---------------L  121 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTL---------------L  121 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceE---------------E
Confidence            4579999999999999999999999999999999999999999999999999999999876532               2


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                      +.            +.-+|.+++|+......                                                 
T Consensus       122 AT------------GdmsG~v~v~~~stg~~-------------------------------------------------  140 (399)
T KOG0296|consen  122 AT------------GDMSGKVLVFKVSTGGE-------------------------------------------------  140 (399)
T ss_pred             Ee------------cCCCccEEEEEcccCce-------------------------------------------------
Confidence            22            22335566665321100                                                 


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR  265 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~  265 (479)
                                                ...+-.-.+.+.-+.|+|-+..|+.|+.||.+-.|.+.++...+.+.||..+++
T Consensus       141 --------------------------~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  141 --------------------------QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT  194 (399)
T ss_pred             --------------------------EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence                                      001112234567789999999999999999999999999888889999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC--------CC
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED--------DS  337 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~--------~~  337 (479)
                      +=.|.|+|+.++++..|++|++|++.++++.......+ .....++.++..+..++.++.++.+.+-...        +.
T Consensus       195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG  273 (399)
T ss_pred             cccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEeccCCccEEEEccccceEEEecCC
Confidence            99999999999999999999999999887654432111 2234456666666666666666555443321        10


Q ss_pred             ---C-----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEE
Q psy8895         338 ---A-----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ  397 (479)
Q Consensus       338 ---~-----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~  397 (479)
                         .                 ...-.+.++|+-||+|.|||+...++...+ .|+..|..+.|.++..+++++.++.|++
T Consensus       274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t~~l~t~c~~g~v~~  352 (399)
T KOG0296|consen  274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNTDYLLTACANGKVRQ  352 (399)
T ss_pred             CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCcchheeeccCceEEe
Confidence               0                 011245789999999999999987766555 5889999999999777777778888999


Q ss_pred             EeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         398 WKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       398 w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      ||..+|+++.++.||...|.+++++|+. .++|+|.|++.++++..
T Consensus       353 wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  353 WDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            9999999999999999999999999998 89999999999999864

>KOG0318|consensus

Probab=100.00  E-value=6.8e-32  Score=248.30  Aligned_cols=383  Identities=21%  Similarity=0.334  Sum_probs=268.9

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceE--eeecccccceEEEEecCCCCccccceEEecccc
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANV--YTLTGHTNTIASVVTQASEPQVGTKTVLLESCE  101 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  101 (479)
                      ..+..|.+|..+|+...|+|.|.|+|||...|+|||||......+  .+++.-.++|..+.+..+...    .+      
T Consensus        50 ~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~R----I~------  119 (603)
T KOG0318|consen   50 ASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKR----IA------  119 (603)
T ss_pred             cceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcE----EE------
Confidence            346679999999999999999999999999999999997653332  245666778888887665421    11      


Q ss_pred             EEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895         102 RIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP  181 (479)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  181 (479)
                          +.|...         ..++.+-.||-..       .+.++..++.   .           +....+.+...-.++.
T Consensus       120 ----avGEGr---------erfg~~F~~DSG~-------SvGei~GhSr---~-----------ins~~~KpsRPfRi~T  165 (603)
T KOG0318|consen  120 ----AVGEGR---------ERFGHVFLWDSGN-------SVGEITGHSR---R-----------INSVDFKPSRPFRIAT  165 (603)
T ss_pred             ----EEecCc---------cceeEEEEecCCC-------ccceeeccce---e-----------EeeeeccCCCceEEEe
Confidence                111110         1122333333211       0111111110   0           0000111111111222


Q ss_pred             CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe---
Q psy8895         182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT---  258 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~---  258 (479)
                      .++++...+.             -.+|+|.-.+++.|..-|.|++|+|||+++++++.||++.+||-.+|+.+..+.   
T Consensus       166 ~sdDn~v~ff-------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~  232 (603)
T KOG0318|consen  166 GSDDNTVAFF-------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSD  232 (603)
T ss_pred             ccCCCeEEEe-------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCC
Confidence            2222221110             125678888899999999999999999999999999999999999999999998   


Q ss_pred             cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC----------------------------------------
Q psy8895         259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ----------------------------------------  298 (479)
Q Consensus       259 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------------------------------  298 (479)
                      +|++.|.+++|+||+..++|+|.|.++|+||+.+......                                        
T Consensus       233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~  312 (603)
T KOG0318|consen  233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV  312 (603)
T ss_pred             CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence            9999999999999999999999999999999865542100                                        


Q ss_pred             -CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-----------------CCCeEEEEeCCCcEEEEECC
Q psy8895         299 -PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-----------------ESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       299 -~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-----------------~~~~l~sgs~d~~v~iwd~~  360 (479)
                       ....+|...|.++..+++++++.+++.||.|.-|+.......                 ....+++.++|.++++.++.
T Consensus       313 ~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~  392 (603)
T KOG0318|consen  313 LKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLK  392 (603)
T ss_pred             hheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecc
Confidence             001234557889999999999999999999999997654321                 22457899999999999764


Q ss_pred             CCe------------e--EE-----------------EEccC--------CCceEEEEEeCCCcEEEEEcCC-cEEEEeC
Q psy8895         361 AGK------------S--LC-----------------TLTNH--------KKSVRSVALHPTLYMFASASPD-NIKQWKC  400 (479)
Q Consensus       361 ~~~------------~--~~-----------------~~~~h--------~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~  400 (479)
                      ...            +  +.                 -++.+        .....+++++|++..++.+++| ++.++.+
T Consensus       393 ~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl  472 (603)
T KOG0318|consen  393 DNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSL  472 (603)
T ss_pred             cCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEe
Confidence            210            0  00                 01111        1235789999999999999888 5999998


Q ss_pred             CCCeEE--eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE------EEEEEEeEecCCCCCce
Q psy8895         401 PEGKFI--QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN------FQRLQVRCVSGFPKPSV  463 (479)
Q Consensus       401 ~~~~~~--~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~------~~~~~~~~~~~~~~~~~  463 (479)
                      ..+++.  ..+..|++.|+++++|||+ +||+|...+.+.+||+.+.+.      +.+-+..|+++-|+...
T Consensus       473 ~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~  544 (603)
T KOG0318|consen  473 SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL  544 (603)
T ss_pred             cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence            766543  3466899999999999999 999999999999999998864      23346779999887654

>KOG0265|consensus

Probab=100.00  E-value=2.6e-32  Score=234.85  Aligned_cols=222  Identities=22%  Similarity=0.395  Sum_probs=189.3

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~  293 (479)
                      +.+|.++|..+.|.+|++.++|+|.|.+++.||+++|+++..+++|..-|+++.-+..|..++ +++.|+++++||+++.
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            457999999999999999999999999999999999999999999999999998666666554 7889999999999876


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~i  356 (479)
                      .....   .+....+.++.|...+..+.+|..|+.|++||++....                 .++..+++-+.|.++++
T Consensus       166 ~~~~t---~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrv  242 (338)
T KOG0265|consen  166 EAIKT---FENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRV  242 (338)
T ss_pred             chhhc---cccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEE
Confidence            55433   23456789999999999999999999999999865431                 34556788899999999


Q ss_pred             EECCC----CeeEEEEccCCC----ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-E
Q psy8895         357 WDLAA----GKSLCTLTNHKK----SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-V  426 (479)
Q Consensus       357 wd~~~----~~~~~~~~~h~~----~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  426 (479)
                      ||++.    .+++..+.+|..    ....++|+|++..+.+++.|+ +.+||......+..++||.+.|+++.|.|.. .
T Consensus       243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i  322 (338)
T KOG0265|consen  243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI  322 (338)
T ss_pred             EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence            99985    355777777542    345678999999999998886 9999998889999999999999999999987 9


Q ss_pred             EEEEeCCCcEEEE
Q psy8895         427 LVSGADNGTMCFW  439 (479)
Q Consensus       427 l~sg~~dg~i~lW  439 (479)
                      |.+++.|++|.+=
T Consensus       323 ils~~sdk~i~lg  335 (338)
T KOG0265|consen  323 ILSCSSDKTIYLG  335 (338)
T ss_pred             EEEeccCceeEee
Confidence            9999999999863

>KOG0291|consensus

Probab=100.00  E-value=8.2e-31  Score=250.60  Aligned_cols=238  Identities=23%  Similarity=0.422  Sum_probs=200.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .+||...+.|++.+|||+++|+|+.||.|||||..+|.|..+|..|+..|+.+.|+..+..+++.+.||+|+.||+...+
T Consensus       346 QQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr  425 (893)
T KOG0291|consen  346 QQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR  425 (893)
T ss_pred             ccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999996544


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEE
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADK-TVKLYKEDDSAT-----------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~i  356 (479)
                      .-... ..+...+..|++.+|.|..+..|+.|. .|.+|+...+..                 .....|++||+|.|||+
T Consensus       426 NfRTf-t~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi  504 (893)
T KOG0291|consen  426 NFRTF-TSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI  504 (893)
T ss_pred             eeeee-cCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence            32222 223445678999999999999999887 599999776432                 23467999999999999


Q ss_pred             EECCCCe-eEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC--------------------cc
Q psy8895         357 WDLAAGK-SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH--------------------NA  414 (479)
Q Consensus       357 wd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h--------------------~~  414 (479)
                      ||+-... .+.++ .+...+.+++|+|++..++.++.| .|.+||...+.....+.|.                    ..
T Consensus       505 W~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K  583 (893)
T KOG0291|consen  505 WDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK  583 (893)
T ss_pred             EEeeccCceeeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence            9997653 34455 466789999999999999988877 5999999887766444332                    13


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      ..+.+++++|| .+++|+....|.+||+.++-.++++|..+
T Consensus       584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~  624 (893)
T KOG0291|consen  584 TFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISD  624 (893)
T ss_pred             ceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence            47899999999 89999999999999999999999988775

>KOG0286|consensus

Probab=100.00  E-value=2.4e-32  Score=234.19  Aligned_cols=217  Identities=23%  Similarity=0.353  Sum_probs=190.7

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+..++|+||.+.|.++.|++|.++|+|+|.||.+.|||.-+......++....+|..++|+|.+.++++||.|+.+.+|
T Consensus        45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   45 MRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             eeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            34557899999999999999999999999999999999999988888888888999999999999999999999999999


Q ss_pred             ECCCCC--c--ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         289 DLEYNK--A--PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       289 d~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      ++.+..  -  ........+.+-+.|+.|.++                          ..++|+|.|.++.+||+++++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--------------------------~~ilT~SGD~TCalWDie~g~~  178 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--------------------------NHILTGSGDMTCALWDIETGQQ  178 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCC--------------------------CceEecCCCceEEEEEcccceE
Confidence            997431  1  111112345555666666553                          2367899999999999999999


Q ss_pred             EEEEccCCCceEEEEEeC-CCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         365 LCTLTNHKKSVRSVALHP-TLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +..|.+|.+.|.+++++| +++.|++++-|. .++||...+.+++++.+|...|++++|.|+| -+++||+|+++|+||+
T Consensus       179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDl  258 (343)
T KOG0286|consen  179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDL  258 (343)
T ss_pred             EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEee
Confidence            999999999999999999 899999999885 9999999999999999999999999999999 8999999999999999


Q ss_pred             CCCeEEEEEE
Q psy8895         442 RTGYNFQRLQ  451 (479)
Q Consensus       442 ~~~~~~~~~~  451 (479)
                      +....+..++
T Consensus       259 RaD~~~a~ys  268 (343)
T KOG0286|consen  259 RADQELAVYS  268 (343)
T ss_pred             cCCcEEeeec
Confidence            9988777665

>KOG0645|consensus

Probab=100.00  E-value=2.5e-31  Score=225.72  Aligned_cols=288  Identities=26%  Similarity=0.438  Sum_probs=210.6

Q ss_pred             eEEeeecCCcccceEEEEEccC-CceEEEecCCCeEEEEeecccc---eEeee-cccccceEEEEecCCCCccccceEEe
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPT-IDVLITAGRDSTARVWDVRTKA---NVYTL-TGHTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~-g~~laSgs~D~~vriWd~~t~~---~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      +...+.++||++.|..+++||- |..|||+|.|++||||+...+.   +...+ .+|+..|.++++.+....     +..
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~-----La~   78 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY-----LAS   78 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE-----EEE
Confidence            4456678899999999999998 8999999999999999988543   33333 379999999998776432     222


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                      ++.+.                      ++-+|+..                                             
T Consensus        79 aSFD~----------------------t~~Iw~k~---------------------------------------------   91 (312)
T KOG0645|consen   79 ASFDA----------------------TVVIWKKE---------------------------------------------   91 (312)
T ss_pred             eeccc----------------------eEEEeecC---------------------------------------------
Confidence            22111                      11111100                                             


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceE
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG---KLK  254 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~---~~~  254 (479)
                                                  ...+++..++.||...|.|++|+++|++||++|.|..|-||.+..+   .+.
T Consensus        92 ----------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~  143 (312)
T KOG0645|consen   92 ----------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECI  143 (312)
T ss_pred             ----------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEE
Confidence                                        0124455678999999999999999999999999999999999754   567


Q ss_pred             EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC-cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy8895         255 LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK  333 (479)
Q Consensus       255 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~  333 (479)
                      ..++.|...|..+.|+|...+|+++|.|++|++|+-.... -.......+++..++++.|++.|.+|++++.|+++++|.
T Consensus       144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeee
Confidence            8899999999999999988899999999999999865221 111111124556899999999988877666666655554


Q ss_pred             CCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCceEEEEEeCCCcEEEEEc-CCcEEEEeCCCC------eE
Q psy8895         334 EDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCPEG------KF  405 (479)
Q Consensus       334 ~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~------~~  405 (479)
                      .                         .+     .+ ..|.+.+..++|. ++ .+++++ ++.|+++.....      ++
T Consensus       224 ~-------------------------~~-----~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l  271 (312)
T KOG0645|consen  224 L-------------------------YT-----DLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNL  271 (312)
T ss_pred             e-------------------------cc-----CcchhcccceEeeeec-cc-ceEeccCCCEEEEEEecCCCCCchHHH
Confidence            2                         21     11 2377888889998 44 445554 556888865432      11


Q ss_pred             -EeeecCCcceEEEEEEcC--CCEEEEEeCCCcEEEEecC
Q psy8895         406 -IQNLPGHNAIINSICVNN--EGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       406 -~~~~~~h~~~v~~l~~~~--~~~l~sg~~dg~i~lWd~~  442 (479)
                       .+.-..|...|+++.++|  .++|++|++||.|++|.+.
T Consensus       272 ~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  272 LAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             HHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence             123456888999999999  4599999999999999874

>KOG0266|consensus

Probab=100.00  E-value=1.3e-31  Score=264.44  Aligned_cols=290  Identities=29%  Similarity=0.498  Sum_probs=237.9

Q ss_pred             eeecCCc-ccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          26 IRHYHGH-LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        26 ~~~~~gH-~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      ...+.+| ..+|.++.|+|+|+.|++++.|+++++|+..+++  ...++.+|...|..+.|.++...             
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~-------------  217 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSY-------------  217 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcE-------------
Confidence            4455555 8899999999999999999999999999998888  77788999999999999877531             


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                    +.+...++++++|++..                                                 
T Consensus       218 --------------l~s~s~D~tiriwd~~~-------------------------------------------------  234 (456)
T KOG0266|consen  218 --------------LLSGSDDKTLRIWDLKD-------------------------------------------------  234 (456)
T ss_pred             --------------EEEecCCceEEEeeccC-------------------------------------------------
Confidence                          11223456777776521                                                 


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                                               ..+..+++.||...|++++|+|+|+++++|+.|++|+|||++++++...+.+|.+
T Consensus       235 -------------------------~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~  289 (456)
T KOG0266|consen  235 -------------------------DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD  289 (456)
T ss_pred             -------------------------CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC
Confidence                                     0123457889999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--ccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA--PVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT  339 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  339 (479)
                      .|.+++|++++..+++++.|+.|++||+.+...  ..... ..... .+.++.|+|++.+++                  
T Consensus       290 ~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll------------------  350 (456)
T KOG0266|consen  290 GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLL------------------  350 (456)
T ss_pred             ceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEE------------------
Confidence            999999999999999999999999999988762  22211 11122 688999999887754                  


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc---eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-cc
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS---VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-NA  414 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~---v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-~~  414 (479)
                             +++.|+++++||+..++.+..+.+|...   +.+...++.+..+.+++.|. |.+|+..++..+..+.+| ..
T Consensus       351 -------~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~  423 (456)
T KOG0266|consen  351 -------SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKA  423 (456)
T ss_pred             -------EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCC
Confidence                   5566777888888888888888888764   33445577899999999885 999999999999999999 88


Q ss_pred             eEEEEEEcCCC-EEEEEe--CCCcEEEEecC
Q psy8895         415 IINSICVNNEG-VLVSGA--DNGTMCFWDWR  442 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~--~dg~i~lWd~~  442 (479)
                      .+..+.+++.. ++++++  .|+.+++|..+
T Consensus       424 ~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  424 AVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            88888998877 788877  79999999753

>KOG0292|consensus

Probab=100.00  E-value=4.6e-32  Score=262.96  Aligned_cols=312  Identities=26%  Similarity=0.442  Sum_probs=247.5

Q ss_pred             cccceeEee-----EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCc
Q psy8895          15 GHVGSVRGL-----TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQ   89 (479)
Q Consensus        15 g~~~~v~~~-----~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~   89 (479)
                      -|++.+..+     +++..|.+|.+||+.++|||+..+++|||.|-+||+|+..+.+++.++.||-+-|..+.|.+..| 
T Consensus        28 lHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyP-  106 (1202)
T KOG0292|consen   28 LHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYP-  106 (1202)
T ss_pred             ecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCc-
Confidence            356666655     36777889999999999999999999999999999999999999999999999999999876543 


Q ss_pred             cccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccc
Q psy8895          90 VGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQ  169 (479)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (479)
                                                |+-+..++.+|++|+...                                    
T Consensus       107 --------------------------WIlSASDDQTIrIWNwqs------------------------------------  124 (1202)
T KOG0292|consen  107 --------------------------WILSASDDQTIRIWNWQS------------------------------------  124 (1202)
T ss_pred             --------------------------eEEEccCCCeEEEEeccC------------------------------------
Confidence                                      233344667888886531                                    


Q ss_pred             ccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC
Q psy8895         170 ELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA  249 (479)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~  249 (479)
                                                             -++..++.||...|.|..|+|...+++|+|-|.+||+||+.
T Consensus       125 ---------------------------------------r~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen  125 ---------------------------------------RKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             ---------------------------------------CceEEEEecCceEEEeeccCCccceEEEecccceEEEEeec
Confidence                                                   12234678999999999999999999999999999999985


Q ss_pred             C--------C---------------------ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         250 T--------G---------------------KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       250 ~--------~---------------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .        +                     -.+..++||...|+-++|+|.-+.+++|++|+.|++|.+...+.-....
T Consensus       166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt  245 (1202)
T KOG0292|consen  166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT  245 (1202)
T ss_pred             chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence            2        1                     0134578999999999999999999999999999999986444322233


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                      ..++.+.+.++.|+|....                         ++|.|+|++||+||+...+.+.++....+..+.++-
T Consensus       246 crgH~nnVssvlfhp~q~l-------------------------IlSnsEDksirVwDm~kRt~v~tfrrendRFW~laa  300 (1202)
T KOG0292|consen  246 CRGHYNNVSSVLFHPHQDL-------------------------ILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAA  300 (1202)
T ss_pred             hhcccCCcceEEecCccce-------------------------eEecCCCccEEEEecccccceeeeeccCCeEEEEEe
Confidence            4567788999999986543                         567888999999999999999999877788999999


Q ss_pred             eCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEeEe-----
Q psy8895         381 HPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCV-----  455 (479)
Q Consensus       381 ~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~-----  455 (479)
                      +|...+|++|.+.++.++.+..-.            .+.|++.++.+..-  |..|+.+|+.|.......++|..     
T Consensus       301 hP~lNLfAAgHDsGm~VFkleREr------------pa~~v~~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~  366 (1202)
T KOG0292|consen  301 HPELNLFAAGHDSGMIVFKLERER------------PAYAVNGNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQ  366 (1202)
T ss_pred             cCCcceeeeecCCceEEEEEcccC------------ceEEEcCCEEEEEc--cceEEeeeccccccceeEeccCCCcccC
Confidence            999999999999988887764221            23456666655443  89999999999777766666643     


Q ss_pred             -----cCCCCCceEEee
Q psy8895         456 -----SGFPKPSVFFFF  467 (479)
Q Consensus       456 -----~~~~~~~~~~~~  467 (479)
                           +-.|...+++.+
T Consensus       367 ~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  367 PPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             CcceeeeccccCeEEEE
Confidence                 444666666655

>KOG0273|consensus

Probab=100.00  E-value=2.8e-31  Score=241.27  Aligned_cols=225  Identities=23%  Similarity=0.407  Sum_probs=197.1

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      ++..|.++|.++.|+.+|.+|++++.|+++.+||..++...+.+.-|..+-.++.|-.+. .+++++.|+.|+++.+...
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~  349 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGED  349 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCC
Confidence            456799999999999999999999999999999999999999999898886778886544 6789999999999999765


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------EESHPVIT  347 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~s  347 (479)
                      ++....  .+|.+.|.++.|+|.+..|++++.|+++++|.......                          ..+..+++
T Consensus       350 ~P~~t~--~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s  427 (524)
T KOG0273|consen  350 RPVKTF--IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS  427 (524)
T ss_pred             Ccceee--ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence            554433  35788999999999999999999999999998654321                          12346899


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      ++.|++|++||+..+.++++|.+|+.+|.+++|+|++.++|+|+.|+ |.+|++++++..+...+-. .|..|+++.+| 
T Consensus       428 as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~  506 (524)
T KOG0273|consen  428 ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGD  506 (524)
T ss_pred             eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999886 9999999999999887654 48999999888 


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy8895         426 VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~  442 (479)
                      .|..+-.|+.+.+-|++
T Consensus       507 kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  507 KLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEEecCCCceEEEec
Confidence            88888899999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=7.1e-31  Score=244.64  Aligned_cols=286  Identities=35%  Similarity=0.596  Sum_probs=230.4

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      ++++.+|.++|.+++|+|++++|++++.|+.+++||+.+++....+.+|...+..+.+.+....     +         +
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----l---------~   67 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY-----L---------A   67 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCE-----E---------E
Confidence            3567899999999999999999999999999999999999888888889888777777554311     1         1


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                      .             ...++.+++|+....                                                   
T Consensus        68 ~-------------~~~~~~i~i~~~~~~---------------------------------------------------   83 (289)
T cd00200          68 S-------------GSSDKTIRLWDLETG---------------------------------------------------   83 (289)
T ss_pred             E-------------EcCCCeEEEEEcCcc---------------------------------------------------
Confidence            1             112344555543210                                                   


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR  265 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~  265 (479)
                                              +....+.+|...+.++.|+++++++++++.|+.+++||+.+++....+..|...+.
T Consensus        84 ------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~  139 (289)
T cd00200          84 ------------------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVN  139 (289)
T ss_pred             ------------------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEE
Confidence                                    01123446778899999999999999999899999999999988888889999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV  345 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l  345 (479)
                      +++++|++.++++++.|+.+++||++..+.....  ..+...+.++.|++++..+                         
T Consensus       140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l-------------------------  192 (289)
T cd00200         140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL--TGHTGEVNSVAFSPDGEKL-------------------------  192 (289)
T ss_pred             EEEEcCcCCEEEEEcCCCcEEEEEccccccceeE--ecCccccceEEECCCcCEE-------------------------
Confidence            9999999888888888999999999755443222  1344567888888876554                         


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc-CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      ++++.|+.+++||++.++.+..+..|...+.++.|+|++.++++++ ++.+.+|+..+++....+.+|...+.+++++++
T Consensus       193 ~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         193 LSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             EEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence            4455577888888888888888878888999999999999999988 557999999999999999999999999999998


Q ss_pred             C-EEEEEeCCCcEEEEe
Q psy8895         425 G-VLVSGADNGTMCFWD  440 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd  440 (479)
                      + .|++++.||.+++|+
T Consensus       273 ~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         273 GKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCEEEEecCCCeEEecC
Confidence            6 999999999999996

>KOG0295|consensus

Probab=100.00  E-value=1.5e-32  Score=241.96  Aligned_cols=258  Identities=27%  Similarity=0.474  Sum_probs=222.0

Q ss_pred             CCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         205 WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       205 ~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      |-+.+.....+.||...|+.+-|+|+--..++++.|++|++||..++++...++||.+.+.+++|+..|+++++++.|-.
T Consensus        94 wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~  173 (406)
T KOG0295|consen   94 WIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLS  173 (406)
T ss_pred             cCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccc
Confidence            43444444567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT  347 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s  347 (479)
                      +++||.+...... ....+++..+.++.|-|.+.++++++.|.+|+.|+.++...                 .+..++++
T Consensus       174 ~~LWd~~~~~~c~-ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As  252 (406)
T KOG0295|consen  174 AKLWDFDTFFRCI-KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS  252 (406)
T ss_pred             hhheeHHHHHHHH-HHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence            9999987532111 11245677899999999999999999999999999887542                 35567899


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC---------------CcEEEEEcCCc-EEEEeCCCCeEEeeecC
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT---------------LYMFASASPDN-IKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~---------------~~~l~s~s~d~-i~~w~~~~~~~~~~~~~  411 (479)
                      ++.|.++++|-+.+.++...+..|+-+|.+++|-|.               ++.+.+++.|+ |++||+.++.++.++.|
T Consensus       253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g  332 (406)
T KOG0295|consen  253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG  332 (406)
T ss_pred             cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec
Confidence            999999999999999888888899999999998654               25888899886 99999999999999999


Q ss_pred             CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecCCCCCceEEeeehhh
Q psy8895         412 HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFS  471 (479)
Q Consensus       412 h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (479)
                      |..+|..++|+|.| +|+|+.+|+++++||++++        +|+...+...+++-++.|.
T Consensus       333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk~~~ah~hfvt~lDfh  385 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMKTLEAHEHFVTSLDFH  385 (406)
T ss_pred             ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--------eeeeccCCCcceeEEEecC
Confidence            99999999999999 9999999999999999986        6677777676766555443

>KOG0293|consensus

Probab=100.00  E-value=4.7e-32  Score=242.37  Aligned_cols=229  Identities=24%  Similarity=0.410  Sum_probs=188.5

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      +++.||..+|..+.|+||.+++++++.|..+++||..+|.+...+. +|..++.+++|.|||..+++|+.|+++..||+.
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            4567899999999999999999999999999999999998876654 345789999999999999999999999999986


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEE
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIR  355 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~  355 (479)
                      .....  ....-....+.+++..++|+.++....|..|++++.....                +.++.++++--.+.+++
T Consensus       343 gn~~~--~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~  420 (519)
T KOG0293|consen  343 GNILG--NWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIH  420 (519)
T ss_pred             cchhh--cccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeE
Confidence            44321  1111122468999999999999999999999999865321                12445667777889999


Q ss_pred             EEECCCCeeEEEEccCCCc---eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEE
Q psy8895         356 LWDLAAGKSLCTLTNHKKS---VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVS  429 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~---v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~s  429 (479)
                      +||++..+.+..+.||...   |+++---.+...+++||+|. |.||+..+|+++..+.||...|+|++++|-.  ++||
T Consensus       421 LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  421 LWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS  500 (519)
T ss_pred             EeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence            9999988888888888654   34333233557889999885 9999999999999999999999999999866  8999


Q ss_pred             EeCCCcEEEEecCC
Q psy8895         430 GADNGTMCFWDWRT  443 (479)
Q Consensus       430 g~~dg~i~lWd~~~  443 (479)
                      +|+||+||||-...
T Consensus       501 asDDgtIRIWg~~~  514 (519)
T KOG0293|consen  501 ASDDGTIRIWGPSD  514 (519)
T ss_pred             cCCCCeEEEecCCc
Confidence            99999999998653

>KOG0284|consensus

Probab=100.00  E-value=1.4e-32  Score=245.45  Aligned_cols=279  Identities=25%  Similarity=0.425  Sum_probs=226.0

Q ss_pred             cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCce
Q psy8895          34 SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFL  113 (479)
Q Consensus        34 ~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (479)
                      -+|+.|.|.|+|+.|+||+..|..-+|+..+-.-..-+++|.+.|.++.++.++..               .+       
T Consensus        97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~w---------------mi-------  154 (464)
T KOG0284|consen   97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTW---------------MI-------  154 (464)
T ss_pred             cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCE---------------EE-------
Confidence            48999999999999999999999999998443333345789999999988766432               11       


Q ss_pred             eeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHH
Q psy8895         114 LSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA  193 (479)
Q Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  193 (479)
                           ++...|.|+.|+.+...                                                      +   
T Consensus       155 -----SgD~gG~iKyWqpnmnn------------------------------------------------------V---  172 (464)
T KOG0284|consen  155 -----SGDKGGMIKYWQPNMNN------------------------------------------------------V---  172 (464)
T ss_pred             -----EcCCCceEEecccchhh------------------------------------------------------h---
Confidence                 22234667777643210                                                      0   


Q ss_pred             hHhcCCCCCCCCCCcceeEEEecC-CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC
Q psy8895         194 KAKALPMPKPQWHAPWKLYRVISG-HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR  272 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~  272 (479)
                                         +.+.. |...|++++|+|+...++++|.||+|+|||..-.+....+.||.-.|++++|+|.
T Consensus       173 -------------------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~  233 (464)
T KOG0284|consen  173 -------------------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPT  233 (464)
T ss_pred             -------------------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCc
Confidence                               01223 4588999999999999999999999999999888777788999999999999999


Q ss_pred             CCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC
Q psy8895         273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC  352 (479)
Q Consensus       273 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~  352 (479)
                      ...++++|.|+.|++||.+++.++...  ..+...|..+.|.+++++|                         +++|.|.
T Consensus       234 kgLiasgskDnlVKlWDprSg~cl~tl--h~HKntVl~~~f~~n~N~L-------------------------lt~skD~  286 (464)
T KOG0284|consen  234 KGLIASGSKDNLVKLWDPRSGSCLATL--HGHKNTVLAVKFNPNGNWL-------------------------LTGSKDQ  286 (464)
T ss_pred             cceeEEccCCceeEeecCCCcchhhhh--hhccceEEEEEEcCCCCee-------------------------EEccCCc
Confidence            999999999999999999998876544  3466789999999987665                         5666677


Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-EEE
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~l~  428 (479)
                      .++++|+++.+.+.++++|+..|+++.|+|- ..+|++++.| .+..|.+...+.+..+ .+|...|+++++.|=| .|+
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~  366 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA  366 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEe
Confidence            7888888888888999999999999999995 4677777766 5999998855555444 5799999999999999 899


Q ss_pred             EEeCCCcEEEEecC
Q psy8895         429 SGADNGTMCFWDWR  442 (479)
Q Consensus       429 sg~~dg~i~lWd~~  442 (479)
                      +|+.|.++++|...
T Consensus       367 tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  367 TGSNDRTVRFWTRN  380 (464)
T ss_pred             ecCCCcceeeeccC
Confidence            99999999999854

>KOG0282|consensus

Probab=100.00  E-value=6.5e-32  Score=246.28  Aligned_cols=223  Identities=19%  Similarity=0.320  Sum_probs=186.8

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +.||..+|..++|+++|..+.|+|.|+.|++||+++|+++..+. ....+.|+.|+|++ ..+++|+.|+.|+.||++++
T Consensus       254 f~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  254 FKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             hhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence            44677778888899999999999999999999999999988875 23467899999998 68889999999999999988


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCcEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------EESHPVITGSHDCTIR  355 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~v~  355 (479)
                      +.....  ..+-+.|..+.|-+.+.++++++.|+++++|+......                  +....++.=+.|+.|.
T Consensus       333 kvvqeY--d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~  410 (503)
T KOG0282|consen  333 KVVQEY--DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIA  410 (503)
T ss_pred             HHHHHH--HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEE
Confidence            765443  23457899999999999999999999999999764321                  2345677788899999


Q ss_pred             EEECCCC---eeEEEEccCC--CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EE
Q psy8895         356 LWDLAAG---KSLCTLTNHK--KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VL  427 (479)
Q Consensus       356 iwd~~~~---~~~~~~~~h~--~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l  427 (479)
                      ++.+...   ...+.+++|.  +.-..+.||||+.+|++|+.++ +.+||..+.+++..++.|...+..+.+.|..  .+
T Consensus       411 ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skv  490 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKV  490 (503)
T ss_pred             EEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCccee
Confidence            9986532   2344677774  4556789999999999998775 9999999999999999999999999998865  89


Q ss_pred             EEEeCCCcEEEEe
Q psy8895         428 VSGADNGTMCFWD  440 (479)
Q Consensus       428 ~sg~~dg~i~lWd  440 (479)
                      ||++.||.|++||
T Consensus       491 at~~w~G~Ikiwd  503 (503)
T KOG0282|consen  491 ATCGWDGLIKIWD  503 (503)
T ss_pred             EecccCceeEecC
Confidence            9999999999997

>KOG0315|consensus

Probab=100.00  E-value=4.2e-30  Score=215.64  Aligned_cols=252  Identities=21%  Similarity=0.348  Sum_probs=202.6

Q ss_pred             CcccccCceEEEeecccceeEeeEE---------------------------eeecCCcccceEEEEEccCCceEEEecC
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLTV---------------------------IRHYHGHLSSVNTISLHPTIDVLITAGR   53 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~~---------------------------~~~~~gH~~~V~~l~~sp~g~~laSgs~   53 (479)
                      +|...+|++..++.-.++.|..|++                           +.+|+||+..|.++.|+-||++++|||+
T Consensus        24 fWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse  103 (311)
T KOG0315|consen   24 FWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE  103 (311)
T ss_pred             eeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCC
Confidence            5888999999999988999998853                           6678999999999999999999999999


Q ss_pred             CCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhh
Q psy8895          54 DSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQI  133 (479)
Q Consensus        54 D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  133 (479)
                      ||++||||++...+-                                                                 
T Consensus       104 Dgt~kIWdlR~~~~q-----------------------------------------------------------------  118 (311)
T KOG0315|consen  104 DGTVKIWDLRSLSCQ-----------------------------------------------------------------  118 (311)
T ss_pred             CceEEEEeccCcccc-----------------------------------------------------------------
Confidence            999999998631100                                                                 


Q ss_pred             hhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEE
Q psy8895         134 IQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYR  213 (479)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (479)
                                                                                                      
T Consensus       119 --------------------------------------------------------------------------------  118 (311)
T KOG0315|consen  119 --------------------------------------------------------------------------------  118 (311)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ....|..+|.++.++|+..-|++|..+|.|++||+....+...+.. -..+|.++.+.|||.+++.+-.-|.+.+|++..
T Consensus       119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~  198 (311)
T KOG0315|consen  119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLN  198 (311)
T ss_pred             hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccC
Confidence            0012456788899999888999999999999999998877655433 345899999999999999999999999999865


Q ss_pred             CCcccC----CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEE
Q psy8895         293 NKAPVQ----PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCT  367 (479)
Q Consensus       293 ~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~  367 (479)
                      .+....    .....+++.+..+.++|+++++++++.                         |.+++||+.+.. +....
T Consensus       199 ~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss-------------------------dktv~iwn~~~~~kle~~  253 (311)
T KOG0315|consen  199 HQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS-------------------------DKTVKIWNTDDFFKLELV  253 (311)
T ss_pred             CCccccceEhhheecccceEEEEEECCCCcEEEeecC-------------------------CceEEEEecCCceeeEEE
Confidence            432111    112345677888999998887765554                         555566666555 55667


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEc
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVN  422 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~  422 (479)
                      +++|++-++..+||.|+.++++++.|. +++|+...++.+...++|.....|+++.
T Consensus       254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            889999999999999999999999886 9999999999999999998777777764

>KOG0313|consensus

Probab=100.00  E-value=1.2e-30  Score=231.21  Aligned_cols=284  Identities=27%  Similarity=0.439  Sum_probs=213.1

Q ss_pred             CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      -|.+=|.++...  +++++||+.||++||||.. |+...++.||.+++.++++-...+.           ...+...   
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~-----------~~~fvsa---  165 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSS-----------SCLFVSA---  165 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCc-----------cceEEEe---
Confidence            466667777666  6999999999999999975 8889999999999987765322211           1111111   


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                                ..+.++++|..+..+.                                                   . .
T Consensus       166 ----------s~Dqtl~Lw~~~~~~~---------------------------------------------------~-~  183 (423)
T KOG0313|consen  166 ----------SMDQTLRLWKWNVGEN---------------------------------------------------K-V  183 (423)
T ss_pred             ----------cCCceEEEEEecCchh---------------------------------------------------h-h
Confidence                      2233455554331100                                                   0 0


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC---------------------
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA---------------------  249 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~---------------------  249 (479)
                                         +.....+||...|.+++..++|..++|||.|.+|+||+..                     
T Consensus       184 -------------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~  244 (423)
T KOG0313|consen  184 -------------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE  244 (423)
T ss_pred             -------------------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence                               0001124899999999999999999999999999999932                     


Q ss_pred             ----CCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895         250 ----TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA  325 (479)
Q Consensus       250 ----~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  325 (479)
                          ++.++.++.||..+|.++.|++ ...++++|.|++|+.||+++++.....   .....+.++.++|....+++|+.
T Consensus       245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll~~gss  320 (423)
T KOG0313|consen  245 KEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLLASGSS  320 (423)
T ss_pred             hcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeee---ecCcceeEeecccccceeeecCC
Confidence                1234567899999999999998 568899999999999999987765432   23456778888776555555544


Q ss_pred             CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC---eeEEEEccCCCceEEEEEeCC-CcEEEEEcCCc-EEEEeC
Q psy8895         326 DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG---KSLCTLTNHKKSVRSVALHPT-LYMFASASPDN-IKQWKC  400 (479)
Q Consensus       326 d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d~-i~~w~~  400 (479)
                                               |..+++||-+++   -+..++.+|..-|.++.++|. .++|++++.|+ +++||+
T Consensus       321 -------------------------dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv  375 (423)
T KOG0313|consen  321 -------------------------DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV  375 (423)
T ss_pred             -------------------------CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence                                     555555555443   245678899999999999995 57889999886 999999


Q ss_pred             CCCe-EEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         401 PEGK-FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       401 ~~~~-~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                      .+.+ .++.+.+|.+.|.++.++..+.++|||.|.+|+++.-
T Consensus       376 RS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  376 RSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             ccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence            8887 8999999999999999999889999999999999863

>KOG0263|consensus

Probab=100.00  E-value=3.4e-31  Score=255.37  Aligned_cols=209  Identities=30%  Similarity=0.504  Sum_probs=178.1

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      ..+++.||.+||...+|+|+.++|+|+|.|++||+|.++|..++..++||..+|..+.|.+-+               .+
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G---------------yY  507 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG---------------YY  507 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc---------------eE
Confidence            355688999999999999999999999999999999999999999999999999999987542               22


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                      |+.+            ..+++.++|...                                                    
T Consensus       508 Fata------------s~D~tArLWs~d----------------------------------------------------  523 (707)
T KOG0263|consen  508 FATA------------SHDQTARLWSTD----------------------------------------------------  523 (707)
T ss_pred             EEec------------CCCceeeeeecc----------------------------------------------------
Confidence            3322            233444544311                                                    


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV  264 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v  264 (479)
                                             ..++.+++.||...|.|++|+|+..|+++||.|.++|+||+.+|..+..|.||.++|
T Consensus       524 -----------------------~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V  580 (707)
T KOG0263|consen  524 -----------------------HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV  580 (707)
T ss_pred             -----------------------cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCce
Confidence                                   012235678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS  337 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  337 (479)
                      .+++|+|+|++|++|+.|+.|++||+.++....+.  .++.+.|.++.|+.+|..+++++.|.+|++||....
T Consensus       581 ~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  581 TALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999999999987766554  345788999999999999999999999999987653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=1.5e-29  Score=268.17  Aligned_cols=219  Identities=21%  Similarity=0.324  Sum_probs=181.9

Q ss_pred             ccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ..+.+++|++ ++.+|++++.|++|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|++||++......
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            3567788876 478999999999999999999999999999999999999996 78899999999999999998765433


Q ss_pred             CCCCCCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEEC
Q psy8895         298 QPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~  359 (479)
                      ..   .....+.++.|. +++..+++|+.|+.|++||......                 .+...+++++.|++|++||+
T Consensus       613 ~~---~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~  689 (793)
T PLN00181        613 TI---KTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDL  689 (793)
T ss_pred             EE---ecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeC
Confidence            22   223568889995 5689999999999999999865321                 12456899999999999999


Q ss_pred             CC------CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-------------ecCCcceEEEE
Q psy8895         360 AA------GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-------------LPGHNAIINSI  419 (479)
Q Consensus       360 ~~------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-------------~~~h~~~v~~l  419 (479)
                      +.      .+++.++.+|...+..++|+|++.++++++.|+ +++|+......+..             ...|...|.++
T Consensus       690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v  769 (793)
T PLN00181        690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSV  769 (793)
T ss_pred             CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEE
Confidence            74      357888999999999999999999999999875 99999765533211             13456679999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEec
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      ++++++ .|++|+.||.|++||+
T Consensus       770 ~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        770 CWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEcCCCCeEEEecCCCcEEEEec
Confidence            999998 9999999999999996

>KOG0316|consensus

Probab=99.98  E-value=1.5e-30  Score=216.66  Aligned_cols=239  Identities=22%  Similarity=0.419  Sum_probs=206.3

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+..+++..|.++|..+.|+-+|+|.++++.|.+||+|+...|.+++++.+|..+|..++.+-|...+++||.|+.+.+|
T Consensus         7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw   86 (307)
T KOG0316|consen    7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW   86 (307)
T ss_pred             chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence            34456788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-----------------CCCeEEEEeCC
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-----------------ESHPVITGSHD  351 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-----------------~~~~l~sgs~d  351 (479)
                      |+++++.....  ..+.+.|..+.|+.....+++|+-|.++++||.+....+                 ..+.+++||.|
T Consensus        87 DV~TGkv~Rr~--rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~D  164 (307)
T KOG0316|consen   87 DVNTGKVDRRF--RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVD  164 (307)
T ss_pred             EcccCeeeeec--ccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccC
Confidence            99998765443  467788999999999999999999999999998764332                 13458899999


Q ss_pred             CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE--EEcC-CCEE
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI--CVNN-EGVL  427 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l--~~~~-~~~l  427 (479)
                      |++|.||++.++.....-+  .+|++++|+++++....++.|. +++.|-.+|++++..+||...=..+  +++. +-.+
T Consensus       165 GtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV  242 (307)
T KOG0316|consen  165 GTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV  242 (307)
T ss_pred             CcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence            9999999999887655544  4899999999999888887775 9999999999999999998754444  4444 3489


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         428 VSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ++||+||.+.+||+..+..+..+.
T Consensus       243 ~sgSEDG~Vy~wdLvd~~~~sk~~  266 (307)
T KOG0316|consen  243 FSGSEDGKVYFWDLVDETQISKLS  266 (307)
T ss_pred             EeccCCceEEEEEeccceeeeeec
Confidence            999999999999999887766553

>KOG0278|consensus

Probab=99.98  E-value=5.6e-31  Score=220.98  Aligned_cols=288  Identities=23%  Similarity=0.378  Sum_probs=227.1

Q ss_pred             ecCCcccceEEEEEc---cCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          28 HYHGHLSSVNTISLH---PTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        28 ~~~gH~~~V~~l~~s---p~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      +..||+.||..|+||   |+|=+|+|++.|+.-.+-+-+||..+.+|.||++.|.+...+.....       .+      
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~-------aa------   75 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATR-------AA------   75 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhh-------hh------
Confidence            357999999999997   67889999999999999999999999999999999987765322110       00      


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                                    +...+=+.++|+.-..                                                  
T Consensus        76 --------------saaadftakvw~a~tg--------------------------------------------------   91 (334)
T KOG0278|consen   76 --------------SAAADFTAKVWDAVTG--------------------------------------------------   91 (334)
T ss_pred             --------------hhcccchhhhhhhhhh--------------------------------------------------
Confidence                          0001112334432100                                                  


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEecCCcC
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLTGHVGS  263 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~~h~~~  263 (479)
                        ..+                       +. -.|..-|.+++|+.|.++|++|+.+..+||+|++..+ ....+.+|.+.
T Consensus        92 --del-----------------------hs-f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~  145 (334)
T KOG0278|consen   92 --DEL-----------------------HS-FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG  145 (334)
T ss_pred             --hhh-----------------------hh-hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc
Confidence              000                       01 1477889999999999999999999999999998764 45688999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      |+.+-|....+.++++.+|++||+||.+++......   ..+..+.++-++++|.++                       
T Consensus       146 Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL---~~~s~VtSlEvs~dG~il-----------------------  199 (334)
T KOG0278|consen  146 IRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL---EFNSPVTSLEVSQDGRIL-----------------------  199 (334)
T ss_pred             ceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE---ecCCCCcceeeccCCCEE-----------------------
Confidence            999999887788889899999999999987765432   334556677777776654                       


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee-cCCcceEEEEEE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL-PGHNAIINSICV  421 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~-~~h~~~v~~l~~  421 (479)
                         +-...+.|++||.....+++..+- ...|.+.+++|+...|+++++|. +..+|..+++.+... ++|.++|.|+.|
T Consensus       200 ---Tia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF  275 (334)
T KOG0278|consen  200 ---TIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF  275 (334)
T ss_pred             ---EEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence               444556799999998888887754 45789999999999999999885 899999999988775 899999999999


Q ss_pred             cCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         422 NNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       422 ~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      +||| ..++||+||+||||....++...
T Consensus       276 SPdGE~yAsGSEDGTirlWQt~~~~~~~  303 (334)
T KOG0278|consen  276 SPDGELYASGSEDGTIRLWQTTPGKTYG  303 (334)
T ss_pred             CCCCceeeccCCCceEEEEEecCCCchh
Confidence            9999 88999999999999988776654

>KOG0281|consensus

Probab=99.98  E-value=7.4e-32  Score=236.15  Aligned_cols=225  Identities=26%  Similarity=0.510  Sum_probs=183.2

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      +.||++.|.|+.+.  .+.|+|||.|.+|++||.++|+++.++.+|...|..+.|+..  +++|+|.|.++.+||+....
T Consensus       233 L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng--~mvtcSkDrsiaVWdm~sps  308 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNG--YMVTCSKDRSIAVWDMASPT  308 (499)
T ss_pred             hhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCC--EEEEecCCceeEEEeccCch
Confidence            45788999999884  669999999999999999999999999999999999999854  89999999999999997543


Q ss_pred             ccc-CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEE
Q psy8895         295 APV-QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       295 ~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd  358 (479)
                      ... .....++...+..+.|+.  +++++++.|.+|++|+......               -....+++||.|.+||+||
T Consensus       309 ~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwd  386 (499)
T KOG0281|consen  309 DITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD  386 (499)
T ss_pred             HHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEe
Confidence            211 111235667788888864  5999999999999999876432               1235689999999999999


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------EEeeecCCcceEEEEEEcCCCEEE
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK---------FIQNLPGHNAIINSICVNNEGVLV  428 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~---------~~~~~~~h~~~v~~l~~~~~~~l~  428 (479)
                      ++.|.++..+++|+.-|+++-|+.  +.+++|..| +|++||+..+.         ++.++..|.+.|..+-|. +-.++
T Consensus       387 i~~G~cLRvLeGHEeLvRciRFd~--krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD-~fqIv  463 (499)
T KOG0281|consen  387 IECGACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD-EFQII  463 (499)
T ss_pred             ccccHHHHHHhchHHhhhheeecC--ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec-ceEEE
Confidence            999999999999999999999953  445666555 69999987664         244566788889888765 33788


Q ss_pred             EEeCCCcEEEEecCCCeEEE
Q psy8895         429 SGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~~~~~  448 (479)
                      +++.|.+|.+||+..+-+.+
T Consensus       464 sssHddtILiWdFl~~~~~~  483 (499)
T KOG0281|consen  464 SSSHDDTILIWDFLNGPPSA  483 (499)
T ss_pred             eccCCCeEEEEEcCCCCccc
Confidence            89999999999999886553

>KOG0276|consensus

Probab=99.97  E-value=2.5e-30  Score=242.43  Aligned_cols=287  Identities=23%  Similarity=0.369  Sum_probs=231.6

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      .+.+++..|++.|.++.|||...+++++=..|.|.|||.+|+..+..++--.-+|.+..|.+..                
T Consensus         4 ~~krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk----------------   67 (794)
T KOG0276|consen    4 DFKRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK----------------   67 (794)
T ss_pred             hhhhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc----------------
Confidence            3456677899999999999999999999999999999999998887776555555444443211                


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                                 .|+..+.++..||+++.+.                                                  
T Consensus        68 -----------nWiv~GsDD~~IrVfnynt--------------------------------------------------   86 (794)
T KOG0276|consen   68 -----------NWIVTGSDDMQIRVFNYNT--------------------------------------------------   86 (794)
T ss_pred             -----------ceEEEecCCceEEEEeccc--------------------------------------------------
Confidence                       1122233444555544321                                                  


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCc
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVG  262 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~  262 (479)
                                               ..-.+.+..|.+.|+|++.+|.-.+++|+|.|-+|++||.+.+ .+.++++||+.
T Consensus        87 -------------------------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~H  141 (794)
T KOG0276|consen   87 -------------------------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEH  141 (794)
T ss_pred             -------------------------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcce
Confidence                                     0112457789999999999999999999999999999999876 66789999999


Q ss_pred             CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895         263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE  341 (479)
Q Consensus       263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  341 (479)
                      -|++++|+| |...+++++-|++|++|.+....+....  .+++.+|.|+.|-+.+.                       
T Consensus       142 yVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl--~gHekGVN~Vdyy~~gd-----------------------  196 (794)
T KOG0276|consen  142 YVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTL--EGHEKGVNCVDYYTGGD-----------------------  196 (794)
T ss_pred             EEEEEEecCCCccceeeeeccccEEEEEcCCCCCceee--eccccCcceEEeccCCC-----------------------
Confidence            999999999 4668999999999999999765544332  35778899998876543                       


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                      ..+++||+.|.++++||..+..++.++++|...|.++.|+|..+++++|+.|+ +++|+..+-++.+++.-....|+|++
T Consensus       197 kpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~  276 (794)
T KOG0276|consen  197 KPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA  276 (794)
T ss_pred             cceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence            24578999999999999999999999999999999999999999999999985 99999999888888888888999998


Q ss_pred             EcCCC-EEEEEeCCCcEE
Q psy8895         421 VNNEG-VLVSGADNGTMC  437 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~  437 (479)
                      -.++. .++.|.+.|.|.
T Consensus       277 ~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  277 AHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             ecCCCCeEEEeccCCcEE
Confidence            77655 788888877764

>KOG0316|consensus

Probab=99.97  E-value=1.5e-29  Score=210.70  Aligned_cols=264  Identities=21%  Similarity=0.336  Sum_probs=213.2

Q ss_pred             ecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          28 HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      .+.+|.++|+++.|.-||++.+|++.|++||+||.-.|..++++.+|...|..+....+..+                  
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnsk------------------   73 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSK------------------   73 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccc------------------
Confidence            45788999999999999999999999999999999999999999999998887765444322                  


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                               +.+.+.+..+.+||++.                                                      
T Consensus        74 ---------f~s~GgDk~v~vwDV~T------------------------------------------------------   90 (307)
T KOG0316|consen   74 ---------FASCGGDKAVQVWDVNT------------------------------------------------------   90 (307)
T ss_pred             ---------cccCCCCceEEEEEccc------------------------------------------------------
Confidence                     11112223444554321                                                      


Q ss_pred             hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEEecCCcCEE
Q psy8895         188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSLTGHVGSVR  265 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~~~h~~~v~  265 (479)
                                           .+..+.+.||.+.|..++|+.+...++|||.|.++++||.++.  ++++.+....+.|.
T Consensus        91 ---------------------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~  149 (307)
T KOG0316|consen   91 ---------------------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS  149 (307)
T ss_pred             ---------------------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCcee
Confidence                                 1233567899999999999999999999999999999999876  56777777888999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------  339 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------  339 (479)
                      ++.+..  ..+++||.||+++.||++.++.....    ...+|.++.|+++++..+.++-++++++.|....+.      
T Consensus       150 Si~v~~--heIvaGS~DGtvRtydiR~G~l~sDy----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkG  223 (307)
T KOG0316|consen  150 SIDVAE--HEIVAGSVDGTVRTYDIRKGTLSSDY----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKG  223 (307)
T ss_pred             EEEecc--cEEEeeccCCcEEEEEeecceeehhh----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcc
Confidence            988864  47899999999999999887654322    245799999999999999999999999998665431      


Q ss_pred             -------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc-eEEEEEeCCCcEEEEEcCCcEEEEe
Q psy8895         340 -------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS-VRSVALHPTLYMFASASPDNIKQWK  399 (479)
Q Consensus       340 -------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~-v~~i~~~~~~~~l~s~s~d~i~~w~  399 (479)
                                   +....+++||+||.|.+||+.....+..+.-|... |.+++++|....|.++....+..|-
T Consensus       224 hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~  297 (307)
T KOG0316|consen  224 HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDLFWY  297 (307)
T ss_pred             cccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCCceecee
Confidence                         22356899999999999999999988888877766 8999999998888888777766664

>KOG0281|consensus

Probab=99.97  E-value=1.3e-31  Score=234.53  Aligned_cols=217  Identities=25%  Similarity=0.464  Sum_probs=190.0

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ....|+|+...  .+.++||..|++|+|||.++..+...+.||+++|.|+.+..  +.+++||.|.+|++||++++++..
T Consensus       196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence            45789999974  67899999999999999999999999999999999999964  589999999999999999988765


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCcEEEEEC
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------EESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~v~iwd~  359 (479)
                      ..  ..+...+..+.|+.  .++++++.|.++.+|++.....                  -+..+++++|.|++|++|++
T Consensus       272 tl--ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TL--IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HH--hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEec
Confidence            43  34566788888874  6899999999999999865421                  13468999999999999999


Q ss_pred             CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEE
Q psy8895         360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCF  438 (479)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~l  438 (479)
                      .+++.+.++.+|+..|.++.+  .+.++++|+.|+ |++||+..|.++..++||..-|.|+.|+ +..+++|+.||+|++
T Consensus       348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd-~krIVSGaYDGkikv  424 (499)
T KOG0281|consen  348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD-NKRIVSGAYDGKIKV  424 (499)
T ss_pred             cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec-CceeeeccccceEEE
Confidence            999999999999999988876  467888988885 9999999999999999999999999886 457999999999999


Q ss_pred             EecCCCe
Q psy8895         439 WDWRTGY  445 (479)
Q Consensus       439 Wd~~~~~  445 (479)
                      ||+.++.
T Consensus       425 Wdl~aal  431 (499)
T KOG0281|consen  425 WDLQAAL  431 (499)
T ss_pred             Eeccccc
Confidence            9999874

>KOG0292|consensus

Probab=99.97  E-value=2.6e-30  Score=250.91  Aligned_cols=232  Identities=23%  Similarity=0.429  Sum_probs=189.6

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+|.++|+.+.|+|.+.+++||+.|..|++|+.++.+++.++.||.+-|+.+.|++..++++++|+|.+|++|++.+.++
T Consensus        48 deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~  127 (1202)
T KOG0292|consen   48 DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKC  127 (1202)
T ss_pred             hccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCce
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999998877


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC---C--CeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE---S--HPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~---~--~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      +...  .++..-+.|..|+|....++++|-|.+|++||...-....   +  ..-..+.. +..-++--...-....+++
T Consensus       128 iavl--tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~-~~~dLfg~~DaVVK~VLEG  204 (1202)
T KOG0292|consen  128 IAVL--TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQ-GNSDLFGQTDAVVKHVLEG  204 (1202)
T ss_pred             EEEE--ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccc-cchhhcCCcCeeeeeeecc
Confidence            6443  4577789999999999999999999999999975322110   0  00011111 1111111011122346789


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE--EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE
Q psy8895         371 HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF--IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      |+..|+.++|+|..++++||++|. |++|.....+.  +.++.||.+.|+++.|.|.. .++|.|+|++||+||+....+
T Consensus       205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            999999999999999999999997 99998876654  56789999999999999987 899999999999999987766


Q ss_pred             EEEE
Q psy8895         447 FQRL  450 (479)
Q Consensus       447 ~~~~  450 (479)
                      ++.+
T Consensus       285 v~tf  288 (1202)
T KOG0292|consen  285 VQTF  288 (1202)
T ss_pred             eeee
Confidence            6554

>KOG0306|consensus

Probab=99.97  E-value=1.1e-28  Score=235.95  Aligned_cols=375  Identities=21%  Similarity=0.366  Sum_probs=261.5

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      .-+|.||...|++|.|+..|..|||||.|+.|-+||+........++||++.++...|..++.              .+.
T Consensus       100 ~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~--------------~lv  165 (888)
T KOG0306|consen  100 LITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDS--------------FLV  165 (888)
T ss_pred             eeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCe--------------EEE
Confidence            446789999999999999999999999999999999998888999999999998887765321              111


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC-CC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT-TA  184 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~  184 (479)
                                   +...+..++.|++....  ++.+. -.++..++.+....                   +.++.. .+
T Consensus       166 -------------S~sKDs~iK~WdL~tqh--Cf~Th-vd~r~Eiw~l~~~~-------------------~~lvt~~~d  210 (888)
T KOG0306|consen  166 -------------SVSKDSMIKFWDLETQH--CFETH-VDHRGEIWALVLDE-------------------KLLVTAGTD  210 (888)
T ss_pred             -------------EeccCceEEEEecccce--eeeEE-ecccceEEEEEEec-------------------ceEEEEecC
Confidence                         22344678888875321  11000 00111111111110                   111111 11


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEE--------------EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYR--------------VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT  250 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~  250 (479)
                      ++..+               |.-.+.--.              ..+...+....+...+++.+++.-+.|..+.++.+.+
T Consensus       211 se~~v---------------~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s  275 (888)
T KOG0306|consen  211 SELKV---------------WELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS  275 (888)
T ss_pred             CceEE---------------EEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence            11100               110000000              0011123344455556677777777777777765431


Q ss_pred             Cc---------------------------------------------------------e--------------------
Q psy8895         251 GK---------------------------------------------------------L--------------------  253 (479)
Q Consensus       251 ~~---------------------------------------------------------~--------------------  253 (479)
                      ..                                                         .                    
T Consensus       276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~  355 (888)
T KOG0306|consen  276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG  355 (888)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence            00                                                         0                    


Q ss_pred             ----------EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC------------------------
Q psy8895         254 ----------KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP------------------------  299 (479)
Q Consensus       254 ----------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------------------------  299 (479)
                                ...+.+|...|++++++.+...+++| ..+++++|+..+.++....                        
T Consensus       356 ~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~G  434 (888)
T KOG0306|consen  356 KTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNG  434 (888)
T ss_pred             CCCccccccceeeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCC
Confidence                      02245788889999999987666665 4578999997755532100                        


Q ss_pred             --------------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC----------------------------
Q psy8895         300 --------------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS----------------------------  337 (479)
Q Consensus       300 --------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~----------------------------  337 (479)
                                    ....|.+.|+.++..|++..+++++.|.++++|+....                            
T Consensus       435 el~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v  514 (888)
T KOG0306|consen  435 ELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCV  514 (888)
T ss_pred             ceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEE
Confidence                          01134678999999999999999999999999985311                            


Q ss_pred             -CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcce
Q psy8895         338 -ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAI  415 (479)
Q Consensus       338 -~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~  415 (479)
                       .+++..+++.+--|++|++|=+.+-+...++-||.-+|.++.++||+.+++++|.|+ |++|-++=|.+-+.+.+|.+.
T Consensus       515 ~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS  594 (888)
T KOG0306|consen  515 SVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS  594 (888)
T ss_pred             EEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCc
Confidence             013456788888999999999999999999999999999999999999999999884 999999999999999999999


Q ss_pred             EEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE-----EEeEecCCCCCceEE
Q psy8895         416 INSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL-----QVRCVSGFPKPSVFF  465 (479)
Q Consensus       416 v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~-----~~~~~~~~~~~~~~~  465 (479)
                      |.++-|-|+. .+.|+|.|+.|+-||-..-+.++.+     .++|....|+.+.++
T Consensus       595 vm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vv  650 (888)
T KOG0306|consen  595 VMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVV  650 (888)
T ss_pred             eeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEE
Confidence            9999999987 7899999999999997776666665     667777777776655

>KOG0300|consensus

Probab=99.97  E-value=1.1e-28  Score=214.01  Aligned_cols=330  Identities=22%  Similarity=0.313  Sum_probs=235.4

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      .+++.|.||.+.|..++....-+.+.|+|.|.+.+||.+++|+++.++.||.++|.++.|......     ++.++    
T Consensus       139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L-----~lTaS----  209 (481)
T KOG0300|consen  139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLL-----LLTAS----  209 (481)
T ss_pred             eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccce-----EEEcc----
Confidence            478889999999999999888889999999999999999999999999999999999999764321     12122    


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                                        .+++..+|+....=+.+...  ....++-.               ...+.....+.......
T Consensus       210 ------------------GD~taHIW~~av~~~vP~~~--a~~~hSsE---------------eE~e~sDe~~~d~d~~~  254 (481)
T KOG0300|consen  210 ------------------GDETAHIWKAAVNWEVPSNN--APSDHSSE---------------EEEEHSDEHNRDTDSSE  254 (481)
T ss_pred             ------------------CCcchHHHHHhhcCcCCCCC--CCCCCCch---------------hhhhccccccccccccc
Confidence                              23455666543210000000  00000000               00000000000000000


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                      ..+.                  +.---+...+.||.+.|.+..|...|+.++++|+|.+-.+||+++|..+..+.||...
T Consensus       255 ~sD~------------------~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E  316 (481)
T KOG0300|consen  255 KSDG------------------HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE  316 (481)
T ss_pred             ccCC------------------ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh
Confidence            0000                  0000123457899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      .+.++-+|..+++++.+.|-+.++||.+....... ...++...+.++.|.-+.                          
T Consensus       317 LtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~-VFQGHtdtVTS~vF~~dd--------------------------  369 (481)
T KOG0300|consen  317 LTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVA-VFQGHTDTVTSVVFNTDD--------------------------  369 (481)
T ss_pred             ccccccCCcceEEEEeccCceeEeccchhhcceee-eecccccceeEEEEecCC--------------------------
Confidence            99999999999999999999999999973322222 234556667777665432                          


Q ss_pred             eEEEEeCCCcEEEEECCCC-eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-----ecCCcceE
Q psy8895         344 PVITGSHDCTIRLWDLAAG-KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-----LPGHNAII  416 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-----~~~h~~~v  416 (479)
                      .+++||.|.+|++||++.. .++.++. -.++++.++++...++++.--++. |++||++. ..+-.     -++|+.-|
T Consensus       370 ~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG-~RlaRlPrtsRqgHrRMV  447 (481)
T KOG0300|consen  370 RVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG-NRLARLPRTSRQGHRRMV  447 (481)
T ss_pred             ceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCC-CccccCCcccccccceee
Confidence            3678888999999998875 4567764 467899999999888888887775 99999864 43333     35899999


Q ss_pred             EEEEEcCCC---EEEEEeCCCcEEEEecCCC
Q psy8895         417 NSICVNNEG---VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       417 ~~l~~~~~~---~l~sg~~dg~i~lWd~~~~  444 (479)
                      .|.++..+.   -|++++-|..+.=|.+.+.
T Consensus       448 ~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  448 TCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eeeeccccCcccccccccccceeeeeEeccc
Confidence            999998654   5999999999999998753

>KOG0640|consensus

Probab=99.97  E-value=5.1e-29  Score=215.35  Aligned_cols=233  Identities=19%  Similarity=0.349  Sum_probs=184.2

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      ..++++..|.+.|.++.|+|....|+||+.|++|+++|......+..++  .-..+|+++.|+|.|.+++.|.+..++++
T Consensus       163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl  242 (430)
T KOG0640|consen  163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL  242 (430)
T ss_pred             ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence            3457888999999999999999999999999999999997654333222  13458999999999999999999999999


Q ss_pred             EECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCeEEE
Q psy8895         288 WDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------------TEESHPVIT  347 (479)
Q Consensus       288 wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------------~~~~~~l~s  347 (479)
                      ||+++.++-... ...++.+.|.++.+++.++..++++.||.|++||-....                   ..++.++++
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            999987765432 224567889999999999999999999999999953321                   235678999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCC--Cc---eEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeee-cCCcceEEEE
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHK--KS---VRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNL-PGHNAIINSI  419 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~--~~---v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~-~~h~~~v~~l  419 (479)
                      .+.|..+++|.+.+++++.+..+-.  +.   -+...|+....++..-.+.  .++-||..++..+..+ .||.+.+..+
T Consensus       323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i  402 (430)
T KOG0640|consen  323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI  402 (430)
T ss_pred             cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence            9999999999999999998876531  11   1233455544444433332  4899999888765444 5899999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .-+|.+ .+++||+|-++|+|=.+
T Consensus       403 ~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  403 VHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             EeCCCCCceeeecccceeeeeeec
Confidence            999988 99999999999999644

>KOG0273|consensus

Probab=99.97  E-value=8.6e-29  Score=225.15  Aligned_cols=232  Identities=24%  Similarity=0.383  Sum_probs=196.9

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      +..|++++|+.+|.+||+|+.||.+++|+. +|..+.++..|.++|.++.|+.+|.++++++-|+++.+||.-++....+
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~  313 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ  313 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence            467999999999999999999999999996 4667778999999999999999999999999999999999866554333


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCC
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      ..  -+...-..+.|-. ...+++++.|+.|.+++.....+                 +...+|+++|.|+|++||++..
T Consensus       314 f~--~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  314 FE--FHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             ee--eccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence            21  1223335566654 35688899999999998765432                 2246799999999999999999


Q ss_pred             CeeEEEEccCCCceEEEEEeCCC---------cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895         362 GKSLCTLTNHKKSVRSVALHPTL---------YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       362 ~~~~~~~~~h~~~v~~i~~~~~~---------~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg  430 (479)
                      ......+..|...|..+.|+|++         ..+++++.| .+++||+..+.+++.+..|+.+|.+++|+|++ ++|+|
T Consensus       391 ~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsG  470 (524)
T KOG0273|consen  391 SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASG  470 (524)
T ss_pred             CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEec
Confidence            99999999999999999999974         356666666 59999999999999999999999999999999 99999


Q ss_pred             eCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         431 ADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       431 ~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      +.||.|.+|+.++++.++.++-.+
T Consensus       471 s~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  471 SLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             CCCCeeEeccccchheeEeecCCC
Confidence            999999999999999988776544

>KOG0276|consensus

Probab=99.97  E-value=2.9e-29  Score=235.27  Aligned_cols=228  Identities=20%  Similarity=0.359  Sum_probs=206.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+..|...|.++.|+|...+++++=.+|.|.||+-++...+..+.-...+|++..|-+...++++|++|..|++|+.++.
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            45568899999999999999999999999999999999999999988899999999999999999999999999999887


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCeEEEEeCCCcE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHPVITGSHDCTI  354 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~l~sgs~d~~v  354 (479)
                      +.....  ..|..-|.+++.+|...++++++.|-+|++|+.+....                   .+...++++|-|+||
T Consensus        88 ekV~~F--eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   88 EKVKTF--EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             eeeEEe--eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            665443  34667899999999999999999999999999876421                   345678999999999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCC--CcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPT--LYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg  430 (479)
                      ++|.+....+..++++|+..|+++++.+.  .+++.++++|. +++||..+..+++++.||...|+.++|.|.- .++||
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence            99999999999999999999999999874  57999999996 9999999999999999999999999999987 99999


Q ss_pred             eCCCcEEEEecCC
Q psy8895         431 ADNGTMCFWDWRT  443 (479)
Q Consensus       431 ~~dg~i~lWd~~~  443 (479)
                      |+||++|||+-.|
T Consensus       246 sEDGTvriWhs~T  258 (794)
T KOG0276|consen  246 SEDGTVRIWNSKT  258 (794)
T ss_pred             cCCccEEEecCcc
Confidence            9999999999765

>KOG0283|consensus

Probab=99.97  E-value=8.4e-29  Score=240.88  Aligned_cols=211  Identities=17%  Similarity=0.301  Sum_probs=162.0

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~w  288 (479)
                      ++++.+.||.+.|..++|+ ..++|+|+|.|.+||+|++....|+..|. |.+-|+|++|+| |.+++++|+-|+.||||
T Consensus       360 kP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiW  437 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLW  437 (712)
T ss_pred             cchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEe
Confidence            4556788999999999998 46799999999999999999999998887 999999999999 67899999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      ++...+...-   .+...-|.++.|.|+|+..++|+.+|.+++|+........         +..|++=   .++   . 
T Consensus       438 sI~d~~Vv~W---~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~---------~~~I~~~---~~K---k-  498 (712)
T KOG0283|consen  438 SISDKKVVDW---NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVS---------DFHIRLH---NKK---K-  498 (712)
T ss_pred             ecCcCeeEee---hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEE---------eeeEeec---cCc---c-
Confidence            9965443221   2334668999999999999888888888777754432111         1111110   011   1 


Q ss_pred             ccCCCceEEEEEeCCCc--EEEEEcCCcEEEEeCCCCeEEeeecCCcce--EEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         369 TNHKKSVRSVALHPTLY--MFASASPDNIKQWKCPEGKFIQNLPGHNAI--INSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~--~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~--v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      ..|. .|+.+.|.|...  +|++..+..|+|+|..+..++..++|+...  -....|+.|| .|+++++|..|.+|+..
T Consensus       499 ~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  499 KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            1233 799999988643  777777778999999888888888886432  2233677788 99999999999999974

>KOG0274|consensus

Probab=99.96  E-value=6e-28  Score=237.75  Aligned_cols=280  Identities=28%  Similarity=0.488  Sum_probs=230.2

Q ss_pred             cccceEEEEEccCCceEEEecCCCeEEEEeecccceEee-ecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYT-LTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        32 H~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      |...+.+..|+  ..++++++.|+++++||..+++.+.+ +.||.+.|.++.+...+.     .++              
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~-----~lv--------------  265 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGD-----KLV--------------  265 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCC-----EEE--------------
Confidence            56678899999  68999999999999999999999998 999999999998753211     111              


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                              ++..+.++++|+...                                                         
T Consensus       266 --------sgS~D~t~rvWd~~s---------------------------------------------------------  280 (537)
T KOG0274|consen  266 --------SGSTDKTERVWDCST---------------------------------------------------------  280 (537)
T ss_pred             --------EEecCCcEEeEecCC---------------------------------------------------------
Confidence                    223456788887421                                                         


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEc
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS  270 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~  270 (479)
                                        ..+.+++.||...|.++...  +.++++||.|.+|++|+++++.++..+.+|.++|+++..+
T Consensus       281 ------------------g~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~  340 (537)
T KOG0274|consen  281 ------------------GECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD  340 (537)
T ss_pred             ------------------CcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec
Confidence                              12345678999999999875  5688999999999999999999999999999999999997


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895         271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH  350 (479)
Q Consensus       271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~  350 (479)
                        +.++++|+.|++|++||+.+.++....  .++...|.++.+.+.                          ..+++|+.
T Consensus       341 --~~~lvsgs~d~~v~VW~~~~~~cl~sl--~gH~~~V~sl~~~~~--------------------------~~~~Sgs~  390 (537)
T KOG0274|consen  341 --EPLLVSGSYDGTVKVWDPRTGKCLKSL--SGHTGRVYSLIVDSE--------------------------NRLLSGSL  390 (537)
T ss_pred             --CCEEEEEecCceEEEEEhhhceeeeee--cCCcceEEEEEecCc--------------------------ceEEeeee
Confidence              669999999999999999877765443  346677777765432                          24678999


Q ss_pred             CCcEEEEECCCC-eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecC-CcceEEEEEEcCCCEE
Q psy8895         351 DCTIRLWDLAAG-KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPG-HNAIINSICVNNEGVL  427 (479)
Q Consensus       351 d~~v~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~~~~l  427 (479)
                      |++|++||+++. +++.++.+|...+..+.+  ....+.+++.|+ |++||..++++++.+.+ |...|+++++. +..+
T Consensus       391 D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~i  467 (537)
T KOG0274|consen  391 DTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEI  467 (537)
T ss_pred             ccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceE
Confidence            999999999999 999999999988866654  456778888775 99999999999999999 77889988877 5578


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEE
Q psy8895         428 VSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      ++++.||++++||++++...+.+
T Consensus       468 l~s~~~~~~~l~dl~~~~~~~~l  490 (537)
T KOG0274|consen  468 LCSSDDGSVKLWDLRSGTLIRTL  490 (537)
T ss_pred             EEEecCCeeEEEecccCchhhhh
Confidence            88899999999999999887755

>KOG0284|consensus

Probab=99.96  E-value=3.3e-29  Score=224.03  Aligned_cols=227  Identities=22%  Similarity=0.343  Sum_probs=198.5

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      .-.|..+.|.|+|+.|++|+..|...+|+..+-.....+++|..+|+++.|++++.+++||+.+|.||.|+.........
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~  175 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII  175 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence            34788999999999999999999999999876655556789999999999999999999999999999999865433222


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCC
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      .  ..+...|.+++|+|+...+++++.|++|++||......                 +...++++||.|..|++||-++
T Consensus       176 ~--ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS  253 (464)
T KOG0284|consen  176 Q--AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS  253 (464)
T ss_pred             h--HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence            1  12346799999999999999999999999999765433                 1234689999999999999999


Q ss_pred             CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCC--CEEEEEeCCCcEEE
Q psy8895         362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNE--GVLVSGADNGTMCF  438 (479)
Q Consensus       362 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~--~~l~sg~~dg~i~l  438 (479)
                      +.++.++.+|...|.++.|+|++.+|+++|.|. ++++|+.+.+.+....+|+..|+++.+.|-  ++|.+|+.||.|..
T Consensus       254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh  333 (464)
T KOG0284|consen  254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH  333 (464)
T ss_pred             cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence            999999999999999999999999999999995 999999988899999999999999999874  48999999999999


Q ss_pred             EecCCCeEE
Q psy8895         439 WDWRTGYNF  447 (479)
Q Consensus       439 Wd~~~~~~~  447 (479)
                      |.+...+++
T Consensus       334 ~~v~~~~p~  342 (464)
T KOG0284|consen  334 WVVGLEEPL  342 (464)
T ss_pred             Eeccccccc
Confidence            998855554

>KOG0266|consensus

Probab=99.96  E-value=2.2e-27  Score=234.43  Aligned_cols=243  Identities=30%  Similarity=0.555  Sum_probs=206.9

Q ss_pred             ceeEEEecCC-CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895         209 WKLYRVISGH-LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV  285 (479)
Q Consensus       209 ~~~~~~~~~h-~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  285 (479)
                      +.....+.+| ...|.|+.|+++|+++++++.|+.+++|+..+.+  ....+.+|...|.+++|+|++.++++++.|++|
T Consensus       148 ~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti  227 (456)
T KOG0266|consen  148 FSLEQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL  227 (456)
T ss_pred             ceeeeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence            3444455554 7889999999999999999999999999998777  677778999999999999999999999999999


Q ss_pred             EEEECCCC-CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895         286 KCWDLEYN-KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT  347 (479)
Q Consensus       286 ~~wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s  347 (479)
                      ++||++.. ......  .++...+.++.|+|.++.+++|+.|++|++|+.+....                 .+...+++
T Consensus       228 riwd~~~~~~~~~~l--~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s  305 (456)
T KOG0266|consen  228 RIWDLKDDGRNLKTL--KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS  305 (456)
T ss_pred             EEeeccCCCeEEEEe--cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE
Confidence            99999544 332222  36788899999999999999999999999999886421                 34567899


Q ss_pred             EeCCCcEEEEECCCCe--eEEEEccCCCc--eEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEE---
Q psy8895         348 GSHDCTIRLWDLAAGK--SLCTLTNHKKS--VRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSI---  419 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~--~~~~~~~h~~~--v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l---  419 (479)
                      ++.|+.|++||+.++.  ++..+.++...  ++++.|+|++.++++++.| .+++||+..+.......+|...+.|+   
T Consensus       306 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  306 ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             cCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecc
Confidence            9999999999999998  66777777655  9999999999999999999 59999999999999999997754333   


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ..++++ .+++|+.|+.|.+||..++..+++++..
T Consensus       386 ~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h  420 (456)
T KOG0266|consen  386 TLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH  420 (456)
T ss_pred             cccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence            345666 8999999999999999999888877666

>KOG0643|consensus

Probab=99.96  E-value=1.2e-26  Score=196.91  Aligned_cols=225  Identities=24%  Similarity=0.385  Sum_probs=176.6

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE-----CCCcEEEEECC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-----DDRTVKCWDLE  291 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-----~d~~i~~wd~~  291 (479)
                      ||++.|.|+.++-+.+.+++|+.|.++++||+.+|+.+..++ ...+|+.+.|+++|.+++.+.     ..+.|.++|++
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~  128 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIR  128 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEcc
Confidence            566667777777788899999999999999999999998887 446899999999998877654     34689999997


Q ss_pred             CCCc-------ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEE
Q psy8895         292 YNKA-------PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVI  346 (479)
Q Consensus       292 ~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~  346 (479)
                      ....       ....  ..+.+.+..+.|.|.+..+++|-.+|.|..||..+..                  .++...++
T Consensus       129 ~~~~~~~s~ep~~kI--~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~Fi  206 (327)
T KOG0643|consen  129 DDSSDIDSEEPYLKI--PTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFI  206 (327)
T ss_pred             CChhhhcccCceEEe--cCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEE
Confidence            4321       1111  2245788999999999999999999999999987642                  12345799


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE-EEEcCCc--EEEEeCCCC------------eEEeeecC
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF-ASASPDN--IKQWKCPEG------------KFIQNLPG  411 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~d~--i~~w~~~~~------------~~~~~~~~  411 (479)
                      ++|.|.+.++||.++-+.++++.. +.+|++.+++|....+ ..++.+.  |.-=....|            +.+...+|
T Consensus       207 T~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkG  285 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKG  285 (327)
T ss_pred             ecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccc
Confidence            999999999999999999999864 6789999999965444 3444442  333333333            33566789


Q ss_pred             CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         412 HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       412 h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      |-++|++++|+|+| -.+||++||.||+.-+...|
T Consensus       286 HFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~Y  320 (327)
T KOG0643|consen  286 HFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSNY  320 (327)
T ss_pred             cccCcceeEECCCCcccccCCCCceEEEEEeccch
Confidence            99999999999999 78999999999998776553

>KOG0275|consensus

Probab=99.96  E-value=1.9e-28  Score=213.02  Aligned_cols=284  Identities=18%  Similarity=0.276  Sum_probs=222.8

Q ss_pred             CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeee--------cccccceEEEEecCCCCccccceEEeccccE
Q psy8895          31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTL--------TGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      |..+.+.|..|||||.+|+|||.||-|.+||..+|+.-..+        --+.+.|.++.|+.+...             
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-------------  277 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-------------  277 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-------------
Confidence            67788999999999999999999999999999998753333        235567777777655321             


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                    +.++..+|.|++|++...+                                               
T Consensus       278 --------------lAsGsqDGkIKvWri~tG~-----------------------------------------------  296 (508)
T KOG0275|consen  278 --------------LASGSQDGKIKVWRIETGQ-----------------------------------------------  296 (508)
T ss_pred             --------------hhccCcCCcEEEEEEecch-----------------------------------------------
Confidence                          2344567888888753210                                               


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                            ++..                     --+.|+..|+|++|+.|+..+.+++.|.++|+..+++|++++.+.||..
T Consensus       297 ------ClRr---------------------FdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS  349 (508)
T KOG0275|consen  297 ------CLRR---------------------FDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS  349 (508)
T ss_pred             ------HHHH---------------------hhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccc
Confidence                  0100                     0125899999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      -|+...|.+||..+++++.||++++|+..+..+.......+....+..+...|.                        +.
T Consensus       350 yvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK------------------------np  405 (508)
T KOG0275|consen  350 YVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK------------------------NP  405 (508)
T ss_pred             cccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC------------------------CC
Confidence            999999999999999999999999999988777655444444445555544432                        12


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEcc---CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS  418 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~  418 (479)
                      ..++.+...+++.|-++. |+.++++..   ..+..-+...+|.+..+.+.+.|. +..+...+|++-.++..|...|-.
T Consensus       406 eh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG  484 (508)
T KOG0275|consen  406 EHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG  484 (508)
T ss_pred             ceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc
Confidence            346677777788888876 566666642   234566778899999888888886 778999999999999999988888


Q ss_pred             EEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         419 ICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       419 l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ++-.|.. .||+-++||.+++|-
T Consensus       485 l~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  485 LTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccCcccchhhhhcccchhhhcC
Confidence            8888876 899999999999994

>KOG0296|consensus

Probab=99.96  E-value=5.5e-27  Score=207.14  Aligned_cols=290  Identities=20%  Similarity=0.249  Sum_probs=215.3

Q ss_pred             EEEeecccceeEeeEE--------------------------eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeec
Q psy8895          10 KLSLTGHVGSVRGLTV--------------------------IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVR   63 (479)
Q Consensus        10 ~~~~~g~~~~v~~~~~--------------------------~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~   63 (479)
                      ..+|..|..+|.++++                          ...+.||+++|.++.|+.||.+||||+.+|.|+||+..
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s  136 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS  136 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence            4678889988888753                          33467999999999999999999999999999999999


Q ss_pred             ccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchh
Q psy8895          64 TKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQ  143 (479)
Q Consensus        64 t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  143 (479)
                      +|....++..   .+..+.+..++|.            ..++..|            ..+|.+-.|++..          
T Consensus       137 tg~~~~~~~~---e~~dieWl~WHp~------------a~illAG------------~~DGsvWmw~ip~----------  179 (399)
T KOG0296|consen  137 TGGEQWKLDQ---EVEDIEWLKWHPR------------AHILLAG------------STDGSVWMWQIPS----------  179 (399)
T ss_pred             cCceEEEeec---ccCceEEEEeccc------------ccEEEee------------cCCCcEEEEECCC----------
Confidence            9987766642   2233333333331            0111111            1223333332210          


Q ss_pred             hhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEE
Q psy8895         144 EVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVR  223 (479)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  223 (479)
                                                                                       ....+.+.||+.+++
T Consensus       180 -----------------------------------------------------------------~~~~kv~~Gh~~~ct  194 (399)
T KOG0296|consen  180 -----------------------------------------------------------------QALCKVMSGHNSPCT  194 (399)
T ss_pred             -----------------------------------------------------------------cceeeEecCCCCCcc
Confidence                                                                             022346789999999


Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC--
Q psy8895         224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG--  300 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--  300 (479)
                      |-.|.|+|+.++++..||+|++|++.+++.+..+.+.. .+..++.++..+..+++|+.++.+++-...+++......  
T Consensus       195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~  274 (399)
T KOG0296|consen  195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGT  274 (399)
T ss_pred             cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCC
Confidence            99999999999999999999999999999887776433 356788888899899999999988887765554322111  


Q ss_pred             ----CCCCCCCeEEEE---EeCCCCEEEEEeCCCeEEEEeCCCCCCC---------------CCCeEEEEeCCCcEEEEE
Q psy8895         301 ----SMDSESGIFSMT---FDNSGSRLITTEADKTVKLYKEDDSATE---------------ESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       301 ----~~~~~~~i~~~~---~~~~~~~l~~~~~d~~i~~~~~~~~~~~---------------~~~~l~sgs~d~~v~iwd  358 (479)
                          ...++..+.++.   ++..-..+++|+-||+|.+||......+               ....++++..||.|+.||
T Consensus       275 ~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  275 VPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWD  354 (399)
T ss_pred             CccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeee
Confidence                112233344444   4444567899999999999997653221               246789999999999999


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCC
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCP  401 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~  401 (479)
                      .++|+.+.++.+|...|.+++++|+..+++++|+|+ .++++++
T Consensus       355 aRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  355 ARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999996 7888764

>KOG0313|consensus

Probab=99.96  E-value=4.1e-27  Score=208.93  Aligned_cols=243  Identities=27%  Similarity=0.458  Sum_probs=198.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC---CEEEEEECCCcEEEEECCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH---PYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~---~~l~s~~~d~~i~~wd~~~~  293 (479)
                      -|.++|.++...  +++|++|+.||.+++||. .|+.+.++.||.++|.++++....   ..++++|.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            488999999876  789999999999999996 588889999999999988875433   35999999999999998765


Q ss_pred             CcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------------
Q psy8895         294 KAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------------  339 (479)
Q Consensus       294 ~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------------  339 (479)
                      .....  ....++...+-++...+++.++++++.|.++++|+......                                
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH  259 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH  259 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence            54322  22347888999999999999999999999999999221100                                


Q ss_pred             ---------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCe---EE
Q psy8895         340 ---------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGK---FI  406 (479)
Q Consensus       340 ---------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~---~~  406 (479)
                               .+...++++|+|.+|+.||+.++....++.+ ..++.+++.+|...++++++.|. +++||..++.   ..
T Consensus       260 t~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~  338 (423)
T KOG0313|consen  260 TEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVS  338 (423)
T ss_pred             ccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeE
Confidence                     0123468999999999999999998888765 45789999999999999999885 9999987653   45


Q ss_pred             eeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCe-EEEEE-----EEeEecCCCCCce
Q psy8895         407 QNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGY-NFQRL-----QVRCVSGFPKPSV  463 (479)
Q Consensus       407 ~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~-~~~~~-----~~~~~~~~~~~~~  463 (479)
                      +++.||++.|.++.++|..  +|++|+.|+++++||+++.. ++..+     ++.|+.+....+.
T Consensus       339 ~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~I  403 (423)
T KOG0313|consen  339 QSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLI  403 (423)
T ss_pred             EeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceE
Confidence            7899999999999999877  79999999999999999765 66554     5666666654433

>KOG0645|consensus

Probab=99.96  E-value=2.4e-26  Score=195.47  Aligned_cols=226  Identities=26%  Similarity=0.384  Sum_probs=185.6

Q ss_pred             EEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCC---ceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy8895         212 YRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATG---KLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVK  286 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~---~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~  286 (479)
                      .+.+++|.+.+..++++|. |..|||+|.|+.||+|+...+   .++..+ .+|+..|++++|+|.|++|+++|.|.++-
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            4578899999999999997 889999999999999999853   333333 47999999999999999999999999999


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CCCCeEE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------EESHPVI  346 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~l~  346 (479)
                      +|.=+.+........-+++..+-+++|+++|.+|++++.|+.+-+|..+....                    +...+|+
T Consensus        87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~  166 (312)
T KOG0645|consen   87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLF  166 (312)
T ss_pred             EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeE
Confidence            99754332211111235778899999999999999999999999998763221                    1224689


Q ss_pred             EEeCCCcEEEEECC---CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec-CCcceEEEEEE
Q psy8895         347 TGSHDCTIRLWDLA---AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP-GHNAIINSICV  421 (479)
Q Consensus       347 sgs~d~~v~iwd~~---~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~-~h~~~v~~l~~  421 (479)
                      ++|+|.+|++|.-.   ...++.++.+|...|.+++|++.+..|+++++|. +++|-.-     ..+. -|+..+..+.+
T Consensus       167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYDVPW  241 (312)
T ss_pred             EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec-----cCcchhcccceEeeee
Confidence            99999999999876   2467899999999999999999999999999995 9999743     2222 37788888888


Q ss_pred             cCCCEEEEEeCCCcEEEEecCC
Q psy8895         422 NNEGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       422 ~~~~~l~sg~~dg~i~lWd~~~  443 (479)
                      . ++.|+|++.|+.|+++....
T Consensus       242 ~-~~~IaS~ggD~~i~lf~~s~  262 (312)
T KOG0645|consen  242 D-NGVIASGGGDDAIRLFKESD  262 (312)
T ss_pred             c-ccceEeccCCCEEEEEEecC
Confidence            8 88999999999999998664

>KOG0282|consensus

Probab=99.96  E-value=2.5e-28  Score=223.01  Aligned_cols=243  Identities=22%  Similarity=0.402  Sum_probs=202.2

Q ss_pred             cceeEEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCC-CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLAT-GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV  285 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  285 (479)
                      |-+..+++.||+..|+++.|.| .+.+|+|++.|+.|+||++.. ++++.++.+|..+|++++|+++|..++|+|.|+.+
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL  282 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence            4456778999999999999999 899999999999999999976 89999999999999999999999999999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT  347 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s  347 (479)
                      ++||++++++....   .....+.|+.|.|++ +.+++|..|+.|+.||.+....                 ..+..+++
T Consensus       283 KlwDtETG~~~~~f---~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis  359 (503)
T KOG0282|consen  283 KLWDTETGQVLSRF---HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS  359 (503)
T ss_pred             eeeccccceEEEEE---ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence            99999999876543   234567899999988 7899999999999999876532                 35678999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC---eEEeeecCCc--ceEEEEE
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG---KFIQNLPGHN--AIINSIC  420 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~---~~~~~~~~h~--~~v~~l~  420 (479)
                      .+.|++++||+.+..-++..+.. +.....++..+|.+..+++-+.|+ +.++.....   ...+.+.||.  +.-..+.
T Consensus       360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~  439 (503)
T KOG0282|consen  360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD  439 (503)
T ss_pred             eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence            99999999999998766654432 234678999999999999999886 777764322   2345577885  3445678


Q ss_pred             EcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         421 VNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ||||| +|++|+.||.+.+||++|-..+..++..
T Consensus       440 fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah  473 (503)
T KOG0282|consen  440 FSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH  473 (503)
T ss_pred             EcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence            99999 9999999999999999987666655443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.96  E-value=6.8e-26  Score=210.98  Aligned_cols=236  Identities=39%  Similarity=0.647  Sum_probs=201.0

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      ++.+|.++|.+++|+|+++++++++.|+.+++|++.+++....+..|...+..+.|+|++..+++++.|+.+++||++..
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~   83 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG   83 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc
Confidence            46689999999999999999999999999999999999888888999999999999999999999999999999999865


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~i  356 (479)
                      +.....  ..+...+.++.|.+++..+++++.++.+.+|+......                 +....+++++.|+.+++
T Consensus        84 ~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          84 ECVRTL--TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cceEEE--eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            433222  23455799999999988888888899999999863210                 12345667777999999


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ||++.++.+..+..|...+.++.|+|++..+++++.+ .+.+||..+++.+..+..|...+.++++++++ ++++++.||
T Consensus       162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  241 (289)
T cd00200         162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG  241 (289)
T ss_pred             EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence            9999999888998999899999999999766666645 69999999999888888999999999999988 677777799


Q ss_pred             cEEEEecCCCeEEEEEE
Q psy8895         435 TMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~~  451 (479)
                      .|++||+.++.....++
T Consensus       242 ~i~i~~~~~~~~~~~~~  258 (289)
T cd00200         242 TIRVWDLRTGECVQTLS  258 (289)
T ss_pred             cEEEEEcCCceeEEEcc
Confidence            99999999887776654

>KOG0293|consensus

Probab=99.95  E-value=8.2e-27  Score=208.91  Aligned_cols=252  Identities=23%  Similarity=0.385  Sum_probs=206.4

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG---KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      |.+...++..|...|..+.|+++|++|||++.|.+..+|++..-   +..+++.+|..+|..+.||||.++|++|+.|..
T Consensus       213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~  292 (519)
T KOG0293|consen  213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEV  292 (519)
T ss_pred             CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHh
Confidence            34445678899999999999999999999999999999987543   457789999999999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT  347 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s  347 (479)
                      +++||..++......... ....+.+++|.|++..+++|+.|+++..|+.+....                 .++..+++
T Consensus       293 ~~lwDv~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeeccCCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEE
Confidence            999999887665443222 345678999999999999999999999999876432                 24566777


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcce--EEEEEEc--
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAI--INSICVN--  422 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~--v~~l~~~--  422 (479)
                      ...|..|++++.++......+. .+.+|+++.+|.+++++...-.+ ++.+||+.+.+.+....||+-.  +-.-||-  
T Consensus       372 v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~  450 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG  450 (519)
T ss_pred             Eecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence            7899999999988765544333 35689999999999887666555 6999999988888888898643  3233554  


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeEEEEE-----EEeEecCCCCC
Q psy8895         423 NEGVLVSGADNGTMCFWDWRTGYNFQRL-----QVRCVSGFPKP  461 (479)
Q Consensus       423 ~~~~l~sg~~dg~i~lWd~~~~~~~~~~-----~~~~~~~~~~~  461 (479)
                      ++.+++|||+|+.|+||+..+|..+..+     .+.|+++.|..
T Consensus       451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  451 NDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPAD  494 (519)
T ss_pred             CcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCC
Confidence            3458999999999999999999999887     67799999844

>KOG0265|consensus

Probab=99.95  E-value=5.4e-26  Score=196.05  Aligned_cols=235  Identities=26%  Similarity=0.437  Sum_probs=189.3

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA-TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+.+|.+.|..+.|+|+|..||||+.|..|.+|+.. ..+-...+++|.+.|+.+.|.+|+..++++|.|++++.||.++
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            467999999999999999999999999999999964 3344567889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC----------------CCCCeEEEEeCCCcEE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT----------------EESHPVITGSHDCTIR  355 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d~~v~  355 (479)
                      ++.....  ..+..-+..+.-..-+ ..+.+++.|+++++||.+....                ..+..+++|+-|+.|+
T Consensus       122 G~~~rk~--k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ik  199 (338)
T KOG0265|consen  122 GKRIRKH--KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIK  199 (338)
T ss_pred             ceeeehh--ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCcee
Confidence            8776442  2344445555422223 4667889999999999874221                2345688999999999


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC----CeEEeeecCCc--ceEEE--EEEcCCC-
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE----GKFIQNLPGHN--AIINS--ICVNNEG-  425 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~----~~~~~~~~~h~--~~v~~--l~~~~~~-  425 (479)
                      +||++.+..++++.+|.+.|+.+..+|++..+.+-+.|. +++||...    ..+++...+|.  -..+.  .+++|++ 
T Consensus       200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~  279 (338)
T KOG0265|consen  200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGT  279 (338)
T ss_pred             eeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCC
Confidence            999999999999999999999999999999998888885 99999853    34477777753  23333  3678888 


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         426 VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      .+.+|+.|+.+.+||..+-..+..+
T Consensus       280 ~i~ags~dr~vyvwd~~~r~~lykl  304 (338)
T KOG0265|consen  280 KITAGSADRFVYVWDTTSRRILYKL  304 (338)
T ss_pred             ccccccccceEEEeecccccEEEEc
Confidence            7889999999999998775555443

>KOG0274|consensus

Probab=99.95  E-value=2.5e-26  Score=226.35  Aligned_cols=248  Identities=30%  Similarity=0.466  Sum_probs=193.8

Q ss_pred             ecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          28 HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      .+.||++.|.+++|.--+++|+|||.|.++|+||+.+|++++++.||.+.+.++......                 .  
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~-----------------~--  304 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFL-----------------L--  304 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCce-----------------E--
Confidence            388999999999999878999999999999999999999999999999888777642210                 0  


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                                .++..+.++++|+++.                                                      
T Consensus       305 ----------~sgs~D~tVkVW~v~n------------------------------------------------------  320 (537)
T KOG0274|consen  305 ----------VSGSRDNTVKVWDVTN------------------------------------------------------  320 (537)
T ss_pred             ----------eeccCCceEEEEeccC------------------------------------------------------
Confidence                      0122345666666421                                                      


Q ss_pred             hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEE
Q psy8895         188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL  267 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v  267 (479)
                                           .+...++.+|.++|.++.++  +.++++|+.|++|++||..+++++..+.+|...|.++
T Consensus       321 ---------------------~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl  377 (537)
T KOG0274|consen  321 ---------------------GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSL  377 (537)
T ss_pred             ---------------------cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEE
Confidence                                 12234567799999999987  8899999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCC-CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895         268 TVSPRHPYLFSCGDDRTVKCWDLEYN-KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI  346 (479)
Q Consensus       268 ~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~  346 (479)
                      .+.+. ..+++|+.|++|++||+++. ++.....  .+.+-+..+                           ....+.++
T Consensus       378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~--~h~~~v~~l---------------------------~~~~~~Lv  427 (537)
T KOG0274|consen  378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ--GHTSLVSSL---------------------------LLRDNFLV  427 (537)
T ss_pred             EecCc-ceEEeeeeccceEeecCCchhhhhhhhc--CCccccccc---------------------------ccccceeE
Confidence            88765 68999999999999999887 5443321  111111111                           11235688


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCC
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h  412 (479)
                      +++.|++|++||.+++++++++++ |...|.++++. +...+.++.++.+++||+.++++.+.+-.+
T Consensus       428 s~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l~~~  493 (537)
T KOG0274|consen  428 SSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTLLST  493 (537)
T ss_pred             eccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence            999999999999999999999998 67889988876 344555555557999999999988876433

>KOG1446|consensus

Probab=99.95  E-value=5.8e-25  Score=191.51  Aligned_cols=291  Identities=21%  Similarity=0.293  Sum_probs=214.3

Q ss_pred             eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      +...+.|..-.+.|++|.|+++|.+|++++.|.+++|+|..+|+.+.++.-++-.+..+.|......     ++.++.  
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~-----~i~sSt--   76 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNT-----VIHSST--   76 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCce-----EEEccC--
Confidence            3444556666789999999999999999999999999999999999988877767666666543211     110000  


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                        ..+.+||.-+                                                    
T Consensus        77 ------------------k~d~tIryLs----------------------------------------------------   86 (311)
T KOG1446|consen   77 ------------------KEDDTIRYLS----------------------------------------------------   86 (311)
T ss_pred             ------------------CCCCceEEEE----------------------------------------------------
Confidence                              0000000000                                                    


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                                       +      ..-+..+.+.||...|.+++.+|.++.++|++.|++|++||++..++...+.-...
T Consensus        87 -----------------l------~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~  143 (311)
T KOG1446|consen   87 -----------------L------HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR  143 (311)
T ss_pred             -----------------e------ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence                             0      01245578899999999999999999999999999999999998887766543333


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCC-CcccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN-KAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT  339 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  339 (479)
                        ...+|+|.|-++|.+...+.|++||++.- +.+......  +.......+.|+|+|+.++.++..+            
T Consensus       144 --pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s------------  209 (311)
T KOG1446|consen  144 --PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS------------  209 (311)
T ss_pred             --cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC------------
Confidence              35689999999998877779999999853 333322211  2345688899999999887665544            


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce---EEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecC-Ccc
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV---RSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPG-HNA  414 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v---~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~-h~~  414 (479)
                                   .+++.|.-.|....++..+...-   -...|+||++.+.++++|+ |.+|+..++..+..+.+ +.+
T Consensus       210 -------------~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~  276 (311)
T KOG1446|consen  210 -------------FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGG  276 (311)
T ss_pred             -------------cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCC
Confidence                         45555556666667776654322   4678999999999999875 99999999999999888 789


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .+.++.|+|.. +++|++  ..+-+|-..
T Consensus       277 ~~~~~~fnP~~~mf~sa~--s~l~fw~p~  303 (311)
T KOG1446|consen  277 PVSCVRFNPRYAMFVSAS--SNLVFWLPD  303 (311)
T ss_pred             CccccccCCceeeeeecC--ceEEEEecc
Confidence            99999999988 677654  678888654

>KOG0294|consensus

Probab=99.95  E-value=1.2e-25  Score=195.23  Aligned_cols=197  Identities=18%  Similarity=0.350  Sum_probs=151.8

Q ss_pred             CCccEEEEEEcCCCc--EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         218 HLGWVRCVAVEPGNE--WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       218 h~~~v~~~~~~~~g~--~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      |.+.|+++.|.+.-.  .|++|+.||.|.+|+..+..++.++++|.+.|+.++++|.++..++.+.|+.+++||+..++.
T Consensus        82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~  161 (362)
T KOG0294|consen   82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV  161 (362)
T ss_pred             cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence            555666666655433  899999999999999999999999999999999999999999999999999999999976654


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      ..... ...  .-..+.|+|.|.+++....+                          .|-+|.+...+....+... ..+
T Consensus       162 a~v~~-L~~--~at~v~w~~~Gd~F~v~~~~--------------------------~i~i~q~d~A~v~~~i~~~-~r~  211 (362)
T KOG0294|consen  162 AFVLN-LKN--KATLVSWSPQGDHFVVSGRN--------------------------KIDIYQLDNASVFREIENP-KRI  211 (362)
T ss_pred             ceeec-cCC--cceeeEEcCCCCEEEEEecc--------------------------EEEEEecccHhHhhhhhcc-ccc
Confidence            32211 111  12348899999887766543                          2445555544444444332 345


Q ss_pred             EEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEE--cCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         376 RSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV--NNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~--~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .++.|...+.+++++.+..|.+||.++..+...+.+|...|-.+.+  .|++ +|+|+|+||.|++||+++.
T Consensus       212 l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  212 LCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            6677776677777666667999999999999999999999999884  3566 8999999999999999876

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=6.1e-25  Score=216.32  Aligned_cols=209  Identities=20%  Similarity=0.241  Sum_probs=162.9

Q ss_pred             ecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcE
Q psy8895         215 ISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTV  285 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i  285 (479)
                      +.||.+.|.+++|+| ++++|++|+.|++|++||+.++       ..+..+.+|...|.+++|+|++ .+|++++.|++|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            568999999999999 8899999999999999999765       2466789999999999999985 689999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      ++||+++++.....  ..+...|.++.|+|++..+                         ++++.|++|++||+++++.+
T Consensus       151 rIWDl~tg~~~~~l--~~h~~~V~sla~spdG~lL-------------------------atgs~Dg~IrIwD~rsg~~v  203 (493)
T PTZ00421        151 NVWDVERGKAVEVI--KCHSDQITSLEWNLDGSLL-------------------------CTTSKDKKLNIIDPRDGTIV  203 (493)
T ss_pred             EEEECCCCeEEEEE--cCCCCceEEEEEECCCCEE-------------------------EEecCCCEEEEEECCCCcEE
Confidence            99999876543222  2355679999999887654                         56677888889999988888


Q ss_pred             EEEccCCCc-eEEEEEeCCCcEEEEEc-----CCcEEEEeCCCCe-EEeeecCC-cceEEEEEEcCCC-EEEEEe-CCCc
Q psy8895         366 CTLTNHKKS-VRSVALHPTLYMFASAS-----PDNIKQWKCPEGK-FIQNLPGH-NAIINSICVNNEG-VLVSGA-DNGT  435 (479)
Q Consensus       366 ~~~~~h~~~-v~~i~~~~~~~~l~s~s-----~d~i~~w~~~~~~-~~~~~~~h-~~~v~~l~~~~~~-~l~sg~-~dg~  435 (479)
                      .++.+|.+. +..+.|.++...+++++     ++.|++||..+.. .......+ ...+....+++++ +|++|+ .|+.
T Consensus       204 ~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~  283 (493)
T PTZ00421        204 SSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN  283 (493)
T ss_pred             EEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence            888888765 34677888766665543     2359999997654 33333333 3456666788888 777766 5999


Q ss_pred             EEEEecCCCeEEEEE
Q psy8895         436 MCFWDWRTGYNFQRL  450 (479)
Q Consensus       436 i~lWd~~~~~~~~~~  450 (479)
                      |++||+.+++.+...
T Consensus       284 Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        284 IRCFELMNERLTFCS  298 (493)
T ss_pred             EEEEEeeCCceEEEe
Confidence            999999998876544

>KOG0299|consensus

Probab=99.95  E-value=2.3e-25  Score=202.55  Aligned_cols=226  Identities=25%  Similarity=0.435  Sum_probs=182.0

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      +|...+.++++++||+||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|+++++|+++.....
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            78999999999999999999999999999999999999999999999999999888788999999999999998643322


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECCC
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      ..  ..+++..|..+....-...+.+|..|.++++|+......               -+...+++||.||.|.+|++.+
T Consensus       280 et--lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  280 ET--LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             HH--HhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence            21  246778888888777788888889999999999743211               1235689999999999999999


Q ss_pred             CeeEEEEc-cC-----------CCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC----eEEeeecCCcceEEEEEEcCC
Q psy8895         362 GKSLCTLT-NH-----------KKSVRSVALHPTLYMFASASPDN-IKQWKCPEG----KFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       362 ~~~~~~~~-~h-----------~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~----~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      .+++.+.. .|           ..-|++++..|...++++++.+. +++|.+.++    +++..++ -.+.|++++|+++
T Consensus       358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s  436 (479)
T KOG0299|consen  358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS  436 (479)
T ss_pred             cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC
Confidence            98887653 22           12689999999999999999775 999999887    3344454 5689999999988


Q ss_pred             C-EEEE-EeCCC-cEEEEecCCCe
Q psy8895         425 G-VLVS-GADNG-TMCFWDWRTGY  445 (479)
Q Consensus       425 ~-~l~s-g~~dg-~i~lWd~~~~~  445 (479)
                      | .+++ .+..- .=|.|-.+.+.
T Consensus       437 gk~ivagiGkEhRlGRW~~~k~~~  460 (479)
T KOG0299|consen  437 GKRIVAGIGKEHRLGRWWCLKSGK  460 (479)
T ss_pred             CCEEEEecccccccceeeEeeccc
Confidence            8 4444 33333 33666665554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.95  E-value=1.1e-24  Score=230.91  Aligned_cols=231  Identities=19%  Similarity=0.342  Sum_probs=187.4

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----c----eEEEEecCCcCEEEEEEcCC-CCEEEEEECCCcE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----K----LKLSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTV  285 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~----~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i  285 (479)
                      +..|.+.|.+++|+|+|+++++|+.|+.|+|||..+.    .    ....+. +...+.+++|++. +.++++++.|++|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            3458999999999999999999999999999997542    1    122333 3457899999874 6789999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVIT  347 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~s  347 (479)
                      ++||+++.+.....  ..+...|.++.|+| ++..+++++.|++|++|+.....                 ...+..+++
T Consensus       558 ~lWd~~~~~~~~~~--~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~lat  635 (793)
T PLN00181        558 QVWDVARSQLVTEM--KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAF  635 (793)
T ss_pred             EEEECCCCeEEEEe--cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEE
Confidence            99999876544332  34667899999996 67899999999999999986532                 123567999


Q ss_pred             EeCCCcEEEEECCCCe-eEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCC------CeEEeeecCCcceEEEE
Q psy8895         348 GSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPE------GKFIQNLPGHNAIINSI  419 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~-~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~------~~~~~~~~~h~~~v~~l  419 (479)
                      |+.|++|++||++..+ ++.++.+|...|.++.|. ++..+++++.| .+++||+..      ...+..+.+|...++++
T Consensus       636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v  714 (793)
T PLN00181        636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV  714 (793)
T ss_pred             EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence            9999999999998765 577888999999999997 45566666666 599999864      35678899999999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      ++++++ +|++|+.|++|++|+...+..+..
T Consensus       715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s  745 (793)
T PLN00181        715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLS  745 (793)
T ss_pred             EEcCCCCEEEEEeCCCEEEEEECCCCCceEE
Confidence            999987 999999999999999877654433

>KOG0305|consensus

Probab=99.95  E-value=2e-25  Score=212.09  Aligned_cols=199  Identities=26%  Similarity=0.386  Sum_probs=166.4

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE-EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      |...|-+++|+  +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+.++++|+.|+.+.|||.......
T Consensus       259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~  336 (484)
T KOG0305|consen  259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK  336 (484)
T ss_pred             cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence            56667788886  67899999999999999998866554 8899999999999999999999999999999999544443


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGS-RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      ...  .++.+.+-.++|.|-.. .||+|                       -|+.|+.|++||..+++.+..+.. ...|
T Consensus       337 ~~~--~~H~aAVKA~awcP~q~~lLAsG-----------------------GGs~D~~i~fwn~~~g~~i~~vdt-gsQV  390 (484)
T KOG0305|consen  337 FTF--TEHTAAVKALAWCPWQSGLLATG-----------------------GGSADRCIKFWNTNTGARIDSVDT-GSQV  390 (484)
T ss_pred             EEE--eccceeeeEeeeCCCccCceEEc-----------------------CCCcccEEEEEEcCCCcEeccccc-CCce
Confidence            332  46778899999998543 34433                       245799999999999999888753 5689


Q ss_pred             EEEEEeCCCcEEEEEc---CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         376 RSVALHPTLYMFASAS---PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s---~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .+|.|++....|+++.   ++.|.+|++++.+.+..+.+|...|..++++||+ .+++|+.|.++++|++=..
T Consensus       391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999886666653   2359999999999999999999999999999999 9999999999999997654

>KOG0268|consensus

Probab=99.94  E-value=5e-27  Score=207.13  Aligned_cols=288  Identities=18%  Similarity=0.329  Sum_probs=210.5

Q ss_pred             EeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ++..+.||.+.|.||+=||.- ..+||||.||.|+|||+.+.++..++++|.+.|..+.+...                .
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~----------------~  121 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQT----------------S  121 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEeccc----------------c
Confidence            566789999999999999985 78999999999999999999999999999999988876431                1


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                      ++.             .+++.+++.|.....              .++                                
T Consensus       122 ~~t-------------vgdDKtvK~wk~~~~--------------p~~--------------------------------  142 (433)
T KOG0268|consen  122 FFT-------------VGDDKTVKQWKIDGP--------------PLH--------------------------------  142 (433)
T ss_pred             eEE-------------ecCCcceeeeeccCC--------------cce--------------------------------
Confidence            122             234456777754320              000                                


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                                                    ++.+ ...+..+.-+..+..++|++.  .|-|||.....++..+.--.+.
T Consensus       143 ------------------------------tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dt  189 (433)
T KOG0268|consen  143 ------------------------------TILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADS  189 (433)
T ss_pred             ------------------------------eeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCc
Confidence                                          0000 112233333345667888875  5889999888888887767788


Q ss_pred             EEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         264 VRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       264 v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      |.++.|+|-.. .|++|+.|++|.+||++...+.....   .......++|+|.+-                        
T Consensus       190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi---~~mRTN~IswnPeaf------------------------  242 (433)
T KOG0268|consen  190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI---LTMRTNTICWNPEAF------------------------  242 (433)
T ss_pred             eeEEecCCCcchheeeeccCCceEEEecccCCccceee---eeccccceecCcccc------------------------
Confidence            99999999755 45677899999999998766543321   122334566666332                        


Q ss_pred             CeEEEEeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-cceEEEE
Q psy8895         343 HPVITGSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSI  419 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-~~~v~~l  419 (479)
                       .+++|++|..++.+|++. ..++...++|.++|.+++|||.|+.|++||.|. |+|+....+.-....... -..|.|+
T Consensus       243 -nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V  321 (433)
T KOG0268|consen  243 -NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV  321 (433)
T ss_pred             -ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE
Confidence             356778888888888876 356778889999999999999999999999985 999998766432221111 1358999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      .+|-|. +++|||+|+.||+|-..-.+.+.
T Consensus       322 k~S~Dskyi~SGSdd~nvRlWka~Aseklg  351 (433)
T KOG0268|consen  322 KYSMDSKYIISGSDDGNVRLWKAKASEKLG  351 (433)
T ss_pred             EEeccccEEEecCCCcceeeeecchhhhcC
Confidence            999888 99999999999999866544443

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.1e-24  Score=212.49  Aligned_cols=230  Identities=20%  Similarity=0.311  Sum_probs=166.9

Q ss_pred             ecCCcccceEEEEEcc-CCceEEEecCCCeEEEEeeccc-------ceEeeecccccceEEEEecCCCCccccceEEecc
Q psy8895          28 HYHGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRTK-------ANVYTLTGHTNTIASVVTQASEPQVGTKTVLLES   99 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~   99 (479)
                      .+.||.++|++++|+| ++++|||||.|++|+|||+.++       +.+.++.+|...|.++.|.+....    .     
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~----i-----  140 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN----V-----  140 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC----E-----
Confidence            3679999999999999 8899999999999999999765       346788999999999998765321    1     


Q ss_pred             ccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccc
Q psy8895         100 CERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQL  179 (479)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  179 (479)
                                       +.+...++++++|++...                                             
T Consensus       141 -----------------LaSgs~DgtVrIWDl~tg---------------------------------------------  158 (493)
T PTZ00421        141 -----------------LASAGADMVVNVWDVERG---------------------------------------------  158 (493)
T ss_pred             -----------------EEEEeCCCEEEEEECCCC---------------------------------------------
Confidence                             112234567888875310                                             


Q ss_pred             ccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec
Q psy8895         180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG  259 (479)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~  259 (479)
                                                    +....+.+|...|.+++|+|+|++|++++.|++|++||+++++.+..+.+
T Consensus       159 ------------------------------~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~  208 (493)
T PTZ00421        159 ------------------------------KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA  208 (493)
T ss_pred             ------------------------------eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec
Confidence                                          01123567889999999999999999999999999999999999889999


Q ss_pred             CCcC-EEEEEEcCCCCEEEEEE----CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         260 HVGS-VRGLTVSPRHPYLFSCG----DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       260 h~~~-v~~v~~~~~~~~l~s~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                      |.+. ...+.|.+++..+++++    .|+.|++||++................+....|++++..+              
T Consensus       209 H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L--------------  274 (493)
T PTZ00421        209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLL--------------  274 (493)
T ss_pred             CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEE--------------
Confidence            9765 34667888887887764    4789999999764433221111222334444555555543              


Q ss_pred             CCCCCCCCCeEEEEe-CCCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCC
Q psy8895         335 DDSATEESHPVITGS-HDCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPT  383 (479)
Q Consensus       335 ~~~~~~~~~~l~sgs-~d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~  383 (479)
                                 ++|+ .|++|++||+..++.+...+. +..+++.++|.|.
T Consensus       275 -----------~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        275 -----------YIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             -----------EEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence                       3333 578888888887777665543 4456778888875

>KOG1407|consensus

Probab=99.94  E-value=1.5e-24  Score=183.68  Aligned_cols=220  Identities=22%  Similarity=0.311  Sum_probs=175.5

Q ss_pred             CCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         217 GHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       217 ~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      ||.+.|..++++| ...++++++.|.+|++||.+++++...+....+. ..+.|+|+|.+++.++.|..|...|.++.+.
T Consensus        62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~  140 (313)
T KOG1407|consen   62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKI  140 (313)
T ss_pred             CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccce
Confidence            5667777777766 4678999999999999999999998877655444 4578999999999999999999999987654


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcEEEEE
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v~iwd  358 (479)
                      ....   +...-+..+.|+.++..++.....|.|.+......+                 .+.+.++++|+.|..+-+||
T Consensus       141 ~~~~---~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD  217 (313)
T KOG1407|consen  141 VNEE---QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWD  217 (313)
T ss_pred             eehh---cccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccC
Confidence            4322   222335567788777888888888888886643211                 14567899999999999999


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC---
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADN---  433 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d---  433 (479)
                      +..--+++.+..++-+|+.++||-++++||++|+|. |.|=+..+|..+..++ +.++-..+++.|.. .||-+.+|   
T Consensus       218 ~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~  296 (313)
T KOG1407|consen  218 VDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDG  296 (313)
T ss_pred             hhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCC
Confidence            999889999999999999999999999999999997 8899999999887775 56677889999988 66655544   


Q ss_pred             ------CcEEEEec
Q psy8895         434 ------GTMCFWDW  441 (479)
Q Consensus       434 ------g~i~lWd~  441 (479)
                            |.++++-+
T Consensus       297 d~~reag~vKiFG~  310 (313)
T KOG1407|consen  297 DSNREAGTVKIFGL  310 (313)
T ss_pred             ccccccceeEEecC
Confidence                  45666544

>KOG0277|consensus

Probab=99.94  E-value=7.1e-26  Score=190.91  Aligned_cols=200  Identities=23%  Similarity=0.332  Sum_probs=159.3

Q ss_pred             cCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEECCCC
Q psy8895         216 SGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       216 ~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +.|...|.++.+++ .++.++++|.|++||+|+...+..+.++.+|..-|...+|+|. ...++++|.|+.+++||++..
T Consensus       101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            35777788888876 4566788899999999999999999999999999999999996 457889999999999998754


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEccCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTNHK  372 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~h~  372 (479)
                      .....  ...+...+.++.|+.-.                        ...++||+.|+.||.||++.- .++..+.+|.
T Consensus       181 gk~~~--i~ah~~Eil~cdw~ky~------------------------~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~  234 (311)
T KOG0277|consen  181 GKFMS--IEAHNSEILCCDWSKYN------------------------HNVLATGGVDNLVRGWDIRNLRTPLFELNGHG  234 (311)
T ss_pred             CceeE--EEeccceeEeecccccC------------------------CcEEEecCCCceEEEEehhhccccceeecCCc
Confidence            22211  11233456666665432                        234788889999999999864 5688889999


Q ss_pred             CceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCC-eEEeeecCCcceEEEEEEcC--CCEEEEEeCCCcEEEEec
Q psy8895         373 KSVRSVALHPT-LYMFASASPD-NIKQWKCPEG-KFIQNLPGHNAIINSICVNN--EGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       373 ~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~--~~~l~sg~~dg~i~lWd~  441 (479)
                      .+|+.++|||. ..+|++++.| .+++||...+ ..+.+..-|...|-.+.+++  .+++|+++.|+.+.||+-
T Consensus       235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            99999999996 5789999999 5999998754 34556677888898888875  459999999999999983

>KOG0650|consensus

Probab=99.94  E-value=8.2e-25  Score=204.68  Aligned_cols=323  Identities=24%  Similarity=0.327  Sum_probs=217.6

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      +-..|.||++-|+||+.+|.|.+|||||.||+||||.+.||+++.+++- .+.|.+++|.+....   -++..+..+. +
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~---~vLAvA~~~~-~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDL---CVLAVAVGEC-V  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCc---eeEEEEecCc-e
Confidence            3445899999999999999999999999999999999999999998873 347889998765432   1122222222 2


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                      +++...          .  |.    ++.  ....                       .+.+....  ........++.+ 
T Consensus       467 ~ivnp~----------~--G~----~~e--~~~t-----------------------~ell~~~~--~~~~p~~~~~~W-  502 (733)
T KOG0650|consen  467 LIVNPI----------F--GD----RLE--VGPT-----------------------KELLASAP--NESEPDAAVVTW-  502 (733)
T ss_pred             EEeCcc----------c--cc----hhh--hcch-----------------------hhhhhcCC--CccCCcccceee-
Confidence            222110          0  00    000  0000                       00000000  000000000000 


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCC
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHV  261 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~  261 (479)
                              .+...        ....+-.++...|...|..+.|+..|.||++...+   ..|.|.++..++....|+...
T Consensus       503 --------~~~~~--------~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ksk  566 (733)
T KOG0650|consen  503 --------SRASL--------DELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSK  566 (733)
T ss_pred             --------chhhh--------hhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcC
Confidence                    00000        00011123455689999999999999999998765   478999999888777887778


Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895         262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE  341 (479)
Q Consensus       262 ~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  341 (479)
                      +.|.++.|+|...+++.++. ..|++||+.........  ......|..++.+|.|..++.++.|+.+.+||++.     
T Consensus       567 G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL--~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl-----  638 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL--LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL-----  638 (733)
T ss_pred             CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH--hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc-----
Confidence            89999999999988887654 67999999754332221  11223577788899888887777777666666532     


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEE------eCCCC---eEEeeecC
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQW------KCPEG---KFIQNLPG  411 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w------~~~~~---~~~~~~~~  411 (479)
                                         ..++.+++..|...+++++|++...+|+++++|. +.++      |+...   ..++.+.+
T Consensus       639 -------------------sskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~g  699 (733)
T KOG0650|consen  639 -------------------SSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRG  699 (733)
T ss_pred             -------------------CcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccC
Confidence                               2367788889999999999999999999999985 5554      22222   34688999


Q ss_pred             Ccce----EEEEEEcCCC-EEEEEeCCCcEEEE
Q psy8895         412 HNAI----INSICVNNEG-VLVSGADNGTMCFW  439 (479)
Q Consensus       412 h~~~----v~~l~~~~~~-~l~sg~~dg~i~lW  439 (479)
                      |...    |...+|.|.. +|.|++.||+|++|
T Consensus       700 H~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  700 HEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceeecccceEeecccCCCceEEecCCCceEEee
Confidence            9765    7777889887 99999999999998

>KOG0301|consensus

Probab=99.94  E-value=1.5e-24  Score=206.26  Aligned_cols=204  Identities=24%  Similarity=0.349  Sum_probs=172.3

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF  309 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~  309 (479)
                      ++..+++|++|..|.+|.+........+.+|+..|.+++...++. ++|||.|.++++|-+......    ..+|+..|+
T Consensus        70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~----l~gH~asVW  144 (745)
T KOG0301|consen   70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYS----LQGHTASVW  144 (745)
T ss_pred             cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhhcc----cCCcchhee
Confidence            455799999999999999999999999999999999999888886 899999999999987533222    346788999


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         310 SMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      ++...|.+ .+++|+.|++|++|+-.....              .+...+++++.||.|++|++ +++++.+..+|+.-|
T Consensus       145 Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~v  222 (745)
T KOG0301|consen  145 AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFV  222 (745)
T ss_pred             eeeecCCC-cEEeccCcceeeeccCCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEE
Confidence            99998877 889999999999998654321              12345899999999999999 788999999999999


Q ss_pred             EEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         376 RSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      .+++..++...++++++|+ +++|+..  ++.+.+.-....|+++++-++|-+++|++||.||+|...
T Consensus       223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  223 YSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            9999767777788888774 9999976  666666545557999999999999999999999999876

>KOG1407|consensus

Probab=99.94  E-value=7.5e-25  Score=185.45  Aligned_cols=245  Identities=18%  Similarity=0.320  Sum_probs=205.2

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEEC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~  290 (479)
                      ..++|...|.+++|+.+|..|++|+.|+++++|++...+...  ...+|.+.|-.++|+|. ...+++++.|++|++||+
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~   94 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI   94 (313)
T ss_pred             HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence            356899999999999999999999999999999998775543  46789999999999885 457889999999999999


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CCCCeEEEEeCCCcE
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHPVITGSHDCTI  354 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d~~v  354 (479)
                      +..++.....   ..+.=.-+.|+|++.+++.+..|..|...|.++...                .....+.-.+..|+|
T Consensus        95 r~~k~~~~i~---~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v  171 (313)
T KOG1407|consen   95 RSGKCTARIE---TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCV  171 (313)
T ss_pred             ccCcEEEEee---ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceE
Confidence            9887765432   223334688999999999999999999988665321                123455666677999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                      .|.....-+++.+++.|....-+|+|+|++++||+|+.|. +.+||+.+--+.+.+..+.-+|..+.|+.|| +||+||+
T Consensus       172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSE  251 (313)
T KOG1407|consen  172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASE  251 (313)
T ss_pred             EEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCc
Confidence            9999999999999999999999999999999999999997 8899999888888888888999999999999 9999999


Q ss_pred             CCcEEEEecCCCeEEEEEEEe----EecCCCCC
Q psy8895         433 NGTMCFWDWRTGYNFQRLQVR----CVSGFPKP  461 (479)
Q Consensus       433 dg~i~lWd~~~~~~~~~~~~~----~~~~~~~~  461 (479)
                      |-.|-|=+++||..+..++..    .+.+-|+.
T Consensus       252 Dh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  252 DHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKR  284 (313)
T ss_pred             cceEEeEecccCCeEEEeeccCCceeEEecCCC
Confidence            999999999999877665443    24555655

>KOG0973|consensus

Probab=99.94  E-value=1.8e-24  Score=216.08  Aligned_cols=311  Identities=21%  Similarity=0.296  Sum_probs=227.3

Q ss_pred             cCCccc-ceEEEEEccCCceEEEec--CCCeEEEEeecc------------cceEeeecccccceEEEEecCCCCccccc
Q psy8895          29 YHGHLS-SVNTISLHPTIDVLITAG--RDSTARVWDVRT------------KANVYTLTGHTNTIASVVTQASEPQVGTK   93 (479)
Q Consensus        29 ~~gH~~-~V~~l~~sp~g~~laSgs--~D~~vriWd~~t------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~   93 (479)
                      +-+|.. .|.++++||||..+|||+  .|+.++||+.+.            .+.+.++..|.+.|.++-|++++.+    
T Consensus         8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~----   83 (942)
T KOG0973|consen    8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSY----   83 (942)
T ss_pred             ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCe----
Confidence            344544 689999999999999999  999999999763            1234556778899999988876542    


Q ss_pred             eEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccc
Q psy8895          94 TVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVP  173 (479)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (479)
                       +.                      ++.++.-+.+|+... ..                              ....+. 
T Consensus        84 -lA----------------------sGSDD~~v~iW~~~~-~~------------------------------~~~~fg-  108 (942)
T KOG0973|consen   84 -LA----------------------SGSDDRLVMIWERAE-IG------------------------------SGTVFG-  108 (942)
T ss_pred             -Ee----------------------eccCcceEEEeeecc-cC------------------------------Cccccc-
Confidence             12                      222333344443221 00                              000000 


Q ss_pred             ccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q psy8895         174 STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL  253 (479)
Q Consensus       174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~  253 (479)
                               +.++                ......|+...++.+|...|..+.|+|++.+++++|.|++|.||+..+...
T Consensus       109 ---------s~g~----------------~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~  163 (942)
T KOG0973|consen  109 ---------STGG----------------AKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFEL  163 (942)
T ss_pred             ---------cccc----------------ccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccccee
Confidence                     0000                011234678889999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---cCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895         254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP---VQP-GSMDSESGIFSMTFDNSGSRLITTEADKTV  329 (479)
Q Consensus       254 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  329 (479)
                      +..+.+|.+.|..+.|+|-|+++++-++|++|++|++..-...   ... ...........+.|+|+|.++++.-.-+  
T Consensus       164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n--  241 (942)
T KOG0973|consen  164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN--  241 (942)
T ss_pred             eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--
Confidence            9999999999999999999999999999999999996432111   111 1122345678899999999998753321  


Q ss_pred             EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC-----Cc------------EEEEEcC
Q psy8895         330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-----LY------------MFASASP  392 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-----~~------------~l~s~s~  392 (479)
                                         +.-.++.|.+-.+.+.-..|-+|..+++++.|+|.     ..            ++|+|+.
T Consensus       242 -------------------~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq  302 (942)
T KOG0973|consen  242 -------------------GGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ  302 (942)
T ss_pred             -------------------CCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence                               11234666666667777888999999999999874     11            6788888


Q ss_pred             Cc-EEEEeCCCCeEEeeecC-CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         393 DN-IKQWKCPEGKFIQNLPG-HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       393 d~-i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      |. +-+|.....+++..... -...|..++++||| .|..+|.||+|.+..++.+
T Consensus       303 DrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  303 DRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             CccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            85 99999877666543322 23468899999999 7999999999999998754

>KOG1063|consensus

Probab=99.94  E-value=2.8e-24  Score=204.43  Aligned_cols=365  Identities=20%  Similarity=0.360  Sum_probs=239.7

Q ss_pred             eeecCCcccceEEEEEccCCc---eEEEecCCCeEEEEeeccc--ceEeeecccccceEEEEecCCCCccccceEEeccc
Q psy8895          26 IRHYHGHLSSVNTISLHPTID---VLITAGRDSTARVWDVRTK--ANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESC  100 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~---~laSgs~D~~vriWd~~t~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~  100 (479)
                      +.++.||.++|+|+.+-|+.+   +|+||+.|+.|++|.++-.  ..+.++++|...+.++.-..   +     ...   
T Consensus        47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~---~-----~~~---  115 (764)
T KOG1063|consen   47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARS---S-----VMT---  115 (764)
T ss_pred             EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeee---e-----EEE---
Confidence            456789999999999999987   8999999999999999732  35677888887776664110   0     000   


Q ss_pred             cEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccc
Q psy8895         101 ERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV  180 (479)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  180 (479)
                                     +   ...++.+.+|+.+..+ ..+.........              ..+-.+....+..+..+.
T Consensus       116 ---------------~---~~ad~~v~vw~~~~~e-~~~~~~~rf~~k--------------~~ipLcL~~~~~~~~~ll  162 (764)
T KOG1063|consen  116 ---------------C---KAADGTVSVWDKQQDE-VFLLAVLRFEIK--------------EAIPLCLAALKNNKTFLL  162 (764)
T ss_pred             ---------------e---eccCceEEEeecCCCc-eeeehheehhhh--------------hHhhHHHhhhccCCcEEE
Confidence                           0   0133556666542111 000000000000              000011111121222222


Q ss_pred             cCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCC---cEEEEEeCCCeEEEEECCCCc-----
Q psy8895         181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN---EWFATGSADKIIKVWDLATGK-----  252 (479)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g---~~l~sgs~d~~i~iWd~~~~~-----  252 (479)
                      +...+...+. ...        .. ...++....+.||.+.|.+++|...+   -+++|+|.|..||||.+.-+.     
T Consensus       163 a~Ggs~~~v~-~~s--------~~-~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~  232 (764)
T KOG1063|consen  163 ACGGSKFVVD-LYS--------SS-ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSN  232 (764)
T ss_pred             EecCcceEEE-Eec--------cC-CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccc
Confidence            2222111110 000        00 11345566789999999999997543   478999999999999864221     


Q ss_pred             ----------------eE----------EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc----------
Q psy8895         253 ----------------LK----------LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP----------  296 (479)
Q Consensus       253 ----------------~~----------~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----------  296 (479)
                                      ..          ..+.||++.|.++.|+|.+..|+++|.|+++.+|......-+          
T Consensus       233 ~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~  312 (764)
T KOG1063|consen  233 EREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEV  312 (764)
T ss_pred             ccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecc
Confidence                            11          113599999999999999999999999999999976433100          


Q ss_pred             ----------------------------------------cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy8895         297 ----------------------------------------VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       297 ----------------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  336 (479)
                                                              ......++...+..+.|+|.|.++++.+.|.+-++|-.-.
T Consensus       313 gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg  392 (764)
T KOG1063|consen  313 GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG  392 (764)
T ss_pred             cccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccc
Confidence                                                    0001122345678899999999999999999888863210


Q ss_pred             C-------------------------CC----------------------------------------------------
Q psy8895         337 S-------------------------AT----------------------------------------------------  339 (479)
Q Consensus       337 ~-------------------------~~----------------------------------------------------  339 (479)
                      .                         ..                                                    
T Consensus       393 ~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnK  472 (764)
T KOG1063|consen  393 RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNK  472 (764)
T ss_pred             cccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCC
Confidence            0                         00                                                    


Q ss_pred             ---C-----------------------------------------------------------CCCeEEEEeC-----CC
Q psy8895         340 ---E-----------------------------------------------------------ESHPVITGSH-----DC  352 (479)
Q Consensus       340 ---~-----------------------------------------------------------~~~~l~sgs~-----d~  352 (479)
                         +                                                           ..+.++|+..     ..
T Consensus       473 a~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehA  552 (764)
T KOG1063|consen  473 AFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHA  552 (764)
T ss_pred             CCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccce
Confidence               0                                                           0011233322     24


Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE----EeeecCCcceEEEEEEcCCC-E
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF----IQNLPGHNAIINSICVNNEG-V  426 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~----~~~~~~h~~~v~~l~~~~~~-~  426 (479)
                      .|++|+..+...+..+++|.-.|+.++||||+++|++.+.|+ +.+|...+...    ....+.|+..|+...++|++ +
T Consensus       553 vI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~  632 (764)
T KOG1063|consen  553 VIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKY  632 (764)
T ss_pred             EEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccce
Confidence            689999999888889999999999999999999999999886 89998754322    22367899999999999999 7


Q ss_pred             EEEEeCCCcEEEEecCCC
Q psy8895         427 LVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~  444 (479)
                      ++|+|.|++|++|....+
T Consensus       633 FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  633 FATASRDKKVKVWEEPDL  650 (764)
T ss_pred             eEEecCCceEEEEeccCc
Confidence            999999999999998866

>KOG2106|consensus

Probab=99.94  E-value=6.1e-23  Score=188.64  Aligned_cols=362  Identities=16%  Similarity=0.248  Sum_probs=233.0

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCe--------EEEEeecccceEeeecccccceEEEEecCCCCccccceEEe
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDST--------ARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~--------vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      .++|.||+..|.|+++|||--.+|||-.-|+        |||||..+...++.+......|.+++|+..+..  ...   
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G--~~l---  171 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGG--SLL---  171 (626)
T ss_pred             cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCC--ceE---
Confidence            5578999999999999999999998876664        999999888888888877788899998765431  111   


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                             .+.           ......-+.+|+........  .+...++                 .+....+.|...+
T Consensus       172 -------~~v-----------D~s~~h~lSVWdWqk~~~~~--~vk~sne-----------------~v~~a~FHPtd~n  214 (626)
T KOG2106|consen  172 -------CAV-----------DDSNPHMLSVWDWQKKAKLG--PVKTSNE-----------------VVFLATFHPTDPN  214 (626)
T ss_pred             -------EEe-----------cCCCccccchhhchhhhccC--cceeccc-----------------eEEEEEeccCCCc
Confidence                   000           11122335566654321110  1111100                 0001112222223


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCC-ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHL-GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS  256 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~  256 (479)
                      .++....+....+....   .        ...+...++.++. ..|.|++|.++|+ .++|..+|.|.||+..+.+..+.
T Consensus       215 liit~Gk~H~~Fw~~~~---~--------~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~  282 (626)
T KOG2106|consen  215 LIITCGKGHLYFWTLRG---G--------SLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ  282 (626)
T ss_pred             EEEEeCCceEEEEEccC---C--------ceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE
Confidence            33322222221111000   0        0112223444433 5699999999886 78999999999999988888777


Q ss_pred             EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy8895         257 LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       257 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  336 (479)
                      ...|.+.|.+++.-.+|. |++|+.|+.|..||-...+.. ...-.+..+.+..+.-...  -+++|...+.|.-=.+.+
T Consensus       283 ~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r-~~elPe~~G~iRtv~e~~~--di~vGTtrN~iL~Gt~~~  358 (626)
T KOG2106|consen  283 VHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLR-ETELPEQFGPIRTVAEGKG--DILVGTTRNFILQGTLEN  358 (626)
T ss_pred             eeecCCceEEEEEecCcc-EeecCccceEEeccccccccc-cccCchhcCCeeEEecCCC--cEEEeeccceEEEeeecC
Confidence            779999999999999985 567999999999994322211 1111233455665543322  256665555443333222


Q ss_pred             CC----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc-CCcEEEEe
Q psy8895         337 SA----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS-PDNIKQWK  399 (479)
Q Consensus       337 ~~----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~  399 (479)
                      ..                .+....++++++|+.+++|+  ..+++.+.. -.+++.+++|+|.+ .++.+. .+...+.|
T Consensus       359 ~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d  434 (626)
T KOG2106|consen  359 GFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLD  434 (626)
T ss_pred             CceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEe
Confidence            11                23346789999999999999  456666543 46788999999999 555554 55688889


Q ss_pred             CCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC-CCeEEEEE
Q psy8895         400 CPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR-TGYNFQRL  450 (479)
Q Consensus       400 ~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~-~~~~~~~~  450 (479)
                      ..+...+..... ...++++.++|+| +||.|+.|+.|.||-+. .|..+.++
T Consensus       435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~  486 (626)
T KOG2106|consen  435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV  486 (626)
T ss_pred             cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence            888666555444 7899999999999 99999999999999987 55555443

>KOG1539|consensus

Probab=99.94  E-value=1.2e-23  Score=204.11  Aligned_cols=313  Identities=22%  Similarity=0.387  Sum_probs=229.9

Q ss_pred             eEEEEEccC--CceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCce
Q psy8895          36 VNTISLHPT--IDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFL  113 (479)
Q Consensus        36 V~~l~~sp~--g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (479)
                      |++| +||.  .+.++-|+.+|.++|||+.+++.+++++++.+.|+++.-.+.     -+++..                
T Consensus       162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa-----LDVVai----------------  219 (910)
T KOG1539|consen  162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA-----LDVVAI----------------  219 (910)
T ss_pred             eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCc-----ceEEEE----------------
Confidence            5554 4666  578999999999999999999999999999988887753221     111111                


Q ss_pred             eeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHH
Q psy8895         114 LSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA  193 (479)
Q Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  193 (479)
                            +..+|++-+++++.                                                            
T Consensus       220 ------G~~~G~ViifNlK~------------------------------------------------------------  233 (910)
T KOG1539|consen  220 ------GLENGTVIIFNLKF------------------------------------------------------------  233 (910)
T ss_pred             ------eccCceEEEEEccc------------------------------------------------------------
Confidence                  11223332222110                                                            


Q ss_pred             hHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcC
Q psy8895         194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSP  271 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~  271 (479)
                                     .+....++.-.+.|++++|..||+ .+++|+..|.+-+||++..+.+..+. .|.+.|....|-|
T Consensus       234 ---------------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~  298 (910)
T KOG1539|consen  234 ---------------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP  298 (910)
T ss_pred             ---------------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC
Confidence                           011122332258899999999997 56788888999999999988877665 8889999999999


Q ss_pred             CCCEEEEEECCCcEEEEECC--CCCcccCCCCCCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCC-----------
Q psy8895         272 RHPYLFSCGDDRTVKCWDLE--YNKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDS-----------  337 (479)
Q Consensus       272 ~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~-----------  337 (479)
                      ..+.+++.+.|+.+++|-..  .+.+.......+|..+..++.|- .++..+.+++.|++.+.+.....           
T Consensus       299 ~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~  378 (910)
T KOG1539|consen  299 GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN  378 (910)
T ss_pred             CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence            99999999999999998544  22222222334566677788876 66778888888887766642100           


Q ss_pred             ---------C---------------------------------------------C-----------------------C
Q psy8895         338 ---------A---------------------------------------------T-----------------------E  340 (479)
Q Consensus       338 ---------~---------------------------------------------~-----------------------~  340 (479)
                               .                                             .                       .
T Consensus       379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~  458 (910)
T KOG1539|consen  379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF  458 (910)
T ss_pred             ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence                     0                                             0                       0


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEE---ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEE----------
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTL---TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI----------  406 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~----------  406 (479)
                      -++..+.|+..|+|-+||+.+|-...++   +.|.++|+.++.+..++.+++++.++ +++||..+..++          
T Consensus       459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~  538 (910)
T KOG1539|consen  459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT  538 (910)
T ss_pred             cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc
Confidence            0122467889999999999999888888   47999999999999888888887776 899997654421          


Q ss_pred             -------------------------------eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         407 -------------------------------QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       407 -------------------------------~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                                                     +.+.||.+.|+.++||||| +|++++.|++||+||+.|+..+-.+-
T Consensus       539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~  615 (910)
T KOG1539|consen  539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL  615 (910)
T ss_pred             eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence                                           2235899999999999999 99999999999999999998886653

>KOG1408|consensus

Probab=99.94  E-value=2.1e-24  Score=205.65  Aligned_cols=227  Identities=23%  Similarity=0.355  Sum_probs=190.0

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEECCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP---RHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +-...+++++++|+|++||+|...|+++||++..-+....+++|..+|.|+.++.   ..++|++++.|..|+++|....
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            4456799999999999999999999999999999988889999999999999985   2457899999999999998654


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCC----------------------CCCCCCeEEEEe
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSG--SRLITTEADKTVKLYKEDDS----------------------ATEESHPVITGS  349 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~----------------------~~~~~~~l~sgs  349 (479)
                      -.+.+. .-++.+.|.++.|-.+|  ..+++++.|+.|..--....                      ..+...+++++.
T Consensus       537 y~l~qt-ld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c  615 (1080)
T KOG1408|consen  537 YDLVQT-LDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC  615 (1080)
T ss_pred             cchhhh-hcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence            333322 13467889999998777  67888888876533211100                      112356789999


Q ss_pred             CCCcEEEEECCCCeeEEEEcc---CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG  425 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~  425 (479)
                      +|+.|+|||++.++..+.|++   |++..-.+...|.+.++++...| ++.++|.-+|+++-.+.||...|+.+.|.+|.
T Consensus       616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence            999999999999999999985   66778888999999999887666 59999999999999999999999999999999


Q ss_pred             -EEEEEeCCCcEEEEecCCC
Q psy8895         426 -VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~~  444 (479)
                       .|++.+.||.|.+|.+...
T Consensus       696 kHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  696 KHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hhheeecCCceEEEEECchh
Confidence             8999999999999998754

>KOG0278|consensus

Probab=99.93  E-value=1.8e-25  Score=188.00  Aligned_cols=232  Identities=19%  Similarity=0.303  Sum_probs=201.4

Q ss_pred             EecCCCccEEEEEEc---CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         214 VISGHLGWVRCVAVE---PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~---~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      +..||+.+|..++|+   |+|-+|++++.|+.-.+-+-.+|..+.+|.+|.+.|++.+++.+....++++.|-+-++||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            567999999999997   48899999999999999999999999999999999999999999888889999999999998


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC------------------CCCeEEEEeCCC
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE------------------ESHPVITGSHDC  352 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------------~~~~l~sgs~d~  352 (479)
                      -++.....   .++..-+..++|+.+..++++|+.++.+++|++.....+                  ..+.+++.+.|+
T Consensus        89 ~tgdelhs---f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   89 VTGDELHS---FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhh---hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            77665443   345667889999999999999999999999998764321                  235578889999


Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA  431 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~  431 (479)
                      +||+||.++++.+.++. ....|+++.+++++.++..+....|++||..+-.+++..+. ...|.+..+.|+. .++.|+
T Consensus       166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGg  243 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGG  243 (334)
T ss_pred             ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccCCCceEEecC
Confidence            99999999999999985 45789999999999999999888999999988887776543 2357777888887 999999


Q ss_pred             CCCcEEEEecCCCeEEEEE
Q psy8895         432 DNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       432 ~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|..++-||..||+-+..+
T Consensus       244 ed~~~~kfDy~TgeEi~~~  262 (334)
T KOG0278|consen  244 EDFKVYKFDYNTGEEIGSY  262 (334)
T ss_pred             cceEEEEEeccCCceeeec
Confidence            9999999999999988764

>KOG1539|consensus

Probab=99.93  E-value=1.1e-23  Score=204.16  Aligned_cols=393  Identities=16%  Similarity=0.253  Sum_probs=258.9

Q ss_pred             CcccccCceEEEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccCCc-eEEEecC
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTID-VLITAGR   53 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~-~laSgs~   53 (479)
                      |||+.+++.+++|.++...|+++.                          .+.+|+-..+.|++++|..||+ .||+|+.
T Consensus       186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~  265 (910)
T KOG1539|consen  186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRS  265 (910)
T ss_pred             EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccC
Confidence            699999999999999999998863                          2334554469999999999986 6888999


Q ss_pred             CCeEEEEeecccceEeeec-ccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhh
Q psy8895          54 DSTARVWDVRTKANVYTLT-GHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ  132 (479)
Q Consensus        54 D~~vriWd~~t~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  132 (479)
                      .|.+-+||++..+.+..+. .|.+++....|.+..|     ++..+..|..+.++-.+          ..+|..|..+..
T Consensus       266 ~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-----Vl~ta~~DnSlk~~vfD----------~~dg~pR~LR~R  330 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-----VLVTAGADNSLKVWVFD----------SGDGVPRLLRSR  330 (910)
T ss_pred             CceEEEEEcCCCeeeeeeeccccCCcccceecCCCc-----eEeeccCCCceeEEEee----------CCCCcchheeec
Confidence            9999999999888777665 7988888888877654     22222222221111100          001111110000


Q ss_pred             hhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeE
Q psy8895         133 IIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLY  212 (479)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (479)
                                   ..++..              -.+..+.......+.....+...         ..++...-....++-
T Consensus       331 -------------~GHs~P--------------p~~irfy~~~g~~ilsa~~Drt~---------r~fs~~~e~~~~~l~  374 (910)
T KOG1539|consen  331 -------------GGHSAP--------------PSCIRFYGSQGHFILSAKQDRTL---------RSFSVISESQSQELG  374 (910)
T ss_pred             -------------cCCCCC--------------chheeeeccCcEEEEecccCcch---------hhhhhhHHHHhHhhc
Confidence                         000000              00000000000111111111100         000011000000000


Q ss_pred             E--------EecC------CCccEEEEEEcCC-----CcEEEEEeCCCeEEEEECCCCce-EEEEe-----cCCcCEEEE
Q psy8895         213 R--------VISG------HLGWVRCVAVEPG-----NEWFATGSADKIIKVWDLATGKL-KLSLT-----GHVGSVRGL  267 (479)
Q Consensus       213 ~--------~~~~------h~~~v~~~~~~~~-----g~~l~sgs~d~~i~iWd~~~~~~-~~~~~-----~h~~~v~~v  267 (479)
                      .        ....      --.+|..+++...     .+.++.--.+...+.|+.++... ...+.     .-...++++
T Consensus       375 ~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av  454 (910)
T KOG1539|consen  375 QLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAV  454 (910)
T ss_pred             ccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEE
Confidence            0        0000      1235666666432     12333333456789999876544 22332     223678999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------
Q psy8895         268 TVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------  339 (479)
Q Consensus       268 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------  339 (479)
                      +.++-|.+.+.|...|.|-+|++.++......+ ...+...+..++.+..++.+++++.+|.++.|+......       
T Consensus       455 ~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~  534 (910)
T KOG1539|consen  455 CVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG  534 (910)
T ss_pred             EEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence            999999999999999999999998776544432 235678899999999999999999999999999876431       


Q ss_pred             ---------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee
Q psy8895         340 ---------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL  409 (479)
Q Consensus       340 ---------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~  409 (479)
                               ..+..++.+..|-.|+++|+.+.+.++.|.+|...|++++||||++.+++++.|. |++||+.++.++..+
T Consensus       535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~  614 (910)
T KOG1539|consen  535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL  614 (910)
T ss_pred             CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE
Confidence                     1233467788899999999999999999999999999999999999999999885 999999999998765


Q ss_pred             cCCcceEEEEEEcCCC-EEEEEeCC-CcEEEEecCCCe
Q psy8895         410 PGHNAIINSICVNNEG-VLVSGADN-GTMCFWDWRTGY  445 (479)
Q Consensus       410 ~~h~~~v~~l~~~~~~-~l~sg~~d-g~i~lWd~~~~~  445 (479)
                      .- ..++..+.|+|+| +|||...| .-|.+|--++-+
T Consensus       615 ~v-d~~~~sls~SPngD~LAT~Hvd~~gIylWsNkslF  651 (910)
T KOG1539|consen  615 LV-DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSLF  651 (910)
T ss_pred             ec-CCcceeeEECCCCCEEEEEEecCceEEEEEchhHh
Confidence            32 3467889999999 99999988 668999855543

>KOG0640|consensus

Probab=99.93  E-value=7.9e-25  Score=189.54  Aligned_cols=216  Identities=25%  Similarity=0.407  Sum_probs=175.5

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC------------C------ceEEEEecCCcCEEEEEEcCCCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT------------G------KLKLSLTGHVGSVRGLTVSPRHP  274 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~------------~------~~~~~~~~h~~~v~~v~~~~~~~  274 (479)
                      ..+..|..++.+.+|+|||.++++||.|..|+|.|+..            +      ..+.++.-|.++|+++.|+|...
T Consensus       106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~  185 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET  185 (430)
T ss_pred             EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence            45778999999999999999999999999999999861            1      24567788999999999999999


Q ss_pred             EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcE
Q psy8895         275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI  354 (479)
Q Consensus       275 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v  354 (479)
                      .|++++.|++|++||+.+...............+.++.|+|.|.++++|..-.+                         +
T Consensus       186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~-------------------------~  240 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPT-------------------------L  240 (430)
T ss_pred             eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCc-------------------------e
Confidence            999999999999999864332211112234467999999999998877765554                         4


Q ss_pred             EEEECCCCeeEEE---EccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec-CCc-ceEEEEEEcCCC-EE
Q psy8895         355 RLWDLAAGKSLCT---LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP-GHN-AIINSICVNNEG-VL  427 (479)
Q Consensus       355 ~iwd~~~~~~~~~---~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~-~h~-~~v~~l~~~~~~-~l  427 (479)
                      ++||+++.++...   -.+|.+.|+++-+++.+.+.++++.|+ |++||--+++++.++. .|. ..|.+..|..++ ++
T Consensus       241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi  320 (430)
T KOG0640|consen  241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI  320 (430)
T ss_pred             eEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence            5555555444332   136899999999999999999999886 9999999999988765 464 568888899998 89


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         428 VSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++.+.|..+++|++.||.+++++..-
T Consensus       321 LsSG~DS~vkLWEi~t~R~l~~YtGA  346 (430)
T KOG0640|consen  321 LSSGKDSTVKLWEISTGRMLKEYTGA  346 (430)
T ss_pred             eecCCcceeeeeeecCCceEEEEecC
Confidence            99999999999999999999887544

>KOG0310|consensus

Probab=99.93  E-value=5.8e-25  Score=201.37  Aligned_cols=208  Identities=25%  Similarity=0.356  Sum_probs=172.1

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .-....|.++.|..||++|++|...|.|+|+|+++...+..+.+|+.++..+.|+|+. .++++|++|+.+++||+.+..
T Consensus        65 srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~  144 (487)
T KOG0310|consen   65 SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY  144 (487)
T ss_pred             HhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence            3346789999999999999999999999999988877777899999999999999965 567789999999999997654


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEccCCC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTNHKK  373 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~h~~  373 (479)
                      .  +.-..+++..|.|.+++|...                        +.++|||+||+||+||++.. ..+.++ .|..
T Consensus       145 v--~~~l~~htDYVR~g~~~~~~~------------------------hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~  197 (487)
T KOG0310|consen  145 V--QAELSGHTDYVRCGDISPAND------------------------HIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGC  197 (487)
T ss_pred             E--EEEecCCcceeEeeccccCCC------------------------eEEEecCCCceEEEEEeccCCceeEEe-cCCC
Confidence            3  212245667788888777543                        34689999999999999987 666666 5899


Q ss_pred             ceEEEEEeCCCcEEEEEcCCcEEEEeCCCC-eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         374 SVRSVALHPTLYMFASASPDNIKQWKCPEG-KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|..+.+-|.+.++++++.+.+++||+.+| +.+..+..|...|+||++..++ .|+|||-|+.+++||..+=.-+.++
T Consensus       198 pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~  276 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW  276 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence            999999999999999999999999999855 5555666699999999998888 9999999999999996543344444

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.5e-23  Score=205.79  Aligned_cols=183  Identities=13%  Similarity=0.210  Sum_probs=128.1

Q ss_pred             ecCCCccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +.+|...|.+++|+|++.. |++++.|++|+|||+++++....+. |...|.+++|+|+|.+|++++.|+.|++||++++
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            4578899999999998875 5799999999999999998777775 5678999999999999999999999999999876


Q ss_pred             CcccCCCCCCCCCCeE-----EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC----CcEEEEECCC-Ce
Q psy8895         294 KAPVQPGSMDSESGIF-----SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD----CTIRLWDLAA-GK  363 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d----~~v~iwd~~~-~~  363 (479)
                      ......  ..+.+.+.     ...|++++.                         .+++++.|    ++|+|||++. .+
T Consensus       200 ~~i~tl--~gH~g~~~s~~v~~~~fs~d~~-------------------------~IlTtG~d~~~~R~VkLWDlr~~~~  252 (568)
T PTZ00420        200 EIASSF--HIHDGGKNTKNIWIDGLGGDDN-------------------------YILSTGFSKNNMREMKLWDLKNTTS  252 (568)
T ss_pred             cEEEEE--ecccCCceeEEEEeeeEcCCCC-------------------------EEEEEEcCCCCccEEEEEECCCCCC
Confidence            543221  11222221     112223333                         34554444    4799999885 55


Q ss_pred             eEEEEc--cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC--CcceEEEEEEcCCCE
Q psy8895         364 SLCTLT--NHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG--HNAIINSICVNNEGV  426 (479)
Q Consensus       364 ~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~~  426 (479)
                      ++..+.  .+.+.+......+++.+|++|+.| .|++|++..+.. +.+..  +..++.+++|.|...
T Consensus       253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEccccc
Confidence            665543  223333334445568888888766 599999977643 22322  456778899988753

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.9e-23  Score=206.67  Aligned_cols=206  Identities=19%  Similarity=0.298  Sum_probs=158.4

Q ss_pred             EEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc--------eEEEEecCCcCEEEEEEcCCCCEE-EEEEC
Q psy8895         212 YRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGK--------LKLSLTGHVGSVRGLTVSPRHPYL-FSCGD  281 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~  281 (479)
                      ...+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.++.        ....+.+|...|.+++|+|++..+ ++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4567899999999999996 7899999999999999997642        234678999999999999998764 68999


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      |++|++||+++.+.....   .+...+.++.|+++|..+                         ++++.|+.|++||+++
T Consensus       147 DgtIrIWDl~tg~~~~~i---~~~~~V~SlswspdG~lL-------------------------at~s~D~~IrIwD~Rs  198 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQI---NMPKKLSSLKWNIKGNLL-------------------------SGTCVGKHMHIIDPRK  198 (568)
T ss_pred             CCeEEEEECCCCcEEEEE---ecCCcEEEEEECCCCCEE-------------------------EEEecCCEEEEEECCC
Confidence            999999999876543322   234568899999887765                         4556677888899999


Q ss_pred             CeeEEEEccCCCceEE-----EEEeCCCcEEEEEcCC-----cEEEEeCCC-CeEEeee--cCCcceEEEEEEcCCC-EE
Q psy8895         362 GKSLCTLTNHKKSVRS-----VALHPTLYMFASASPD-----NIKQWKCPE-GKFIQNL--PGHNAIINSICVNNEG-VL  427 (479)
Q Consensus       362 ~~~~~~~~~h~~~v~~-----i~~~~~~~~l~s~s~d-----~i~~w~~~~-~~~~~~~--~~h~~~v~~l~~~~~~-~l  427 (479)
                      ++.+.++.+|.+.+.+     ..|++++.++++++.+     .|++||+.+ ++.+..+  ..+.+.+......+++ ++
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            9888899999876533     3345787776665533     499999974 4555443  3444544444445667 78


Q ss_pred             EEEeCCCcEEEEecCCCe
Q psy8895         428 VSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~  445 (479)
                      ++|+.|+.|++|++.+++
T Consensus       279 lsGkGD~tIr~~e~~~~~  296 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGS  296 (568)
T ss_pred             EEEECCCeEEEEEccCCc
Confidence            899999999999998875

>KOG0288|consensus

Probab=99.93  E-value=3e-25  Score=199.10  Aligned_cols=238  Identities=21%  Similarity=0.376  Sum_probs=200.4

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      ...+..|.+.|..+.|.++...|++|+.|..|++|+...++  .+.++.|..+.|+.+.|.++++.+++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            34566799999999999998999999999999999997776  5678888889999999999999999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC--------------CCCeEEEEeCCCcEE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE--------------ESHPVITGSHDCTIR  355 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------~~~~l~sgs~d~~v~  355 (479)
                      +...+.....  .+|...+.++.|......+++++.|.++++||+......              ....+++|..|++||
T Consensus       248 vd~~r~~~TL--sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvR  325 (459)
T KOG0288|consen  248 VDSLRLRHTL--SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVR  325 (459)
T ss_pred             ccchhhhhhh--cccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccceE
Confidence            9876654433  347888999999888778999999999999998764321              123567899999999


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC----cceEEEEEEcCCC-EEEE
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH----NAIINSICVNNEG-VLVS  429 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h----~~~v~~l~~~~~~-~l~s  429 (479)
                      +||+++..+......+. .|+++..++++..+.+++.| .+++.|..+.+..+.+...    ....+.++|||++ ++++
T Consensus       326 fwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA  404 (459)
T KOG0288|consen  326 FWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA  404 (459)
T ss_pred             EEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeee
Confidence            99999999999887764 89999999998777776755 6999999988877765432    2347889999999 9999


Q ss_pred             EeCCCcEEEEecCCCeEEEEEEE
Q psy8895         430 GADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       430 g~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      ||.||.|+||++.+|.+-..++.
T Consensus       405 GS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  405 GSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             ccCCCcEEEEEccCceEEEEecc
Confidence            99999999999999987766543

>KOG0647|consensus

Probab=99.93  E-value=1.3e-23  Score=181.60  Aligned_cols=206  Identities=21%  Similarity=0.332  Sum_probs=163.5

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC--EEEEEECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP--YLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .|.++|.+++|+.||..+++|+.|+.+++||+.+++. ..+..|..+|.++.|-+...  .|+|||.|++||.||++...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            4788999999999999999999999999999999955 57788999999999987654  78999999999999998665


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-------------------CCCeEEEEeCCCcEE
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-------------------ESHPVITGSHDCTIR  355 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-------------------~~~~l~sgs~d~~v~  355 (479)
                      +...   .....+++++..  -...++++..+..|.+|.+.+...+                   +....+.|+-.|.+-
T Consensus       149 pv~t---~~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  149 PVAT---LQLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             eeee---eeccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence            5433   233445665543  3457889999999999998664321                   223357888899999


Q ss_pred             EEECCCC--eeEEEEccCC---------CceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         356 LWDLAAG--KSLCTLTNHK---------KSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       356 iwd~~~~--~~~~~~~~h~---------~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      +..+..+  +.-.+|+.|+         .+|++|+|+|....|++++.| .+.+||-.....+++.+.|..+|+|-+|+.
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~  303 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR  303 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence            9988876  3334566676         268899999987777776655 599999888888888899999999999999


Q ss_pred             CC-EEE
Q psy8895         424 EG-VLV  428 (479)
Q Consensus       424 ~~-~l~  428 (479)
                      +| ++|
T Consensus       304 ~G~ifa  309 (347)
T KOG0647|consen  304 NGSIFA  309 (347)
T ss_pred             CCCEEE
Confidence            98 444

>KOG0288|consensus

Probab=99.93  E-value=6.4e-25  Score=196.97  Aligned_cols=219  Identities=23%  Similarity=0.368  Sum_probs=178.8

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .|-.++|+++.|.++++.+++++.|+.+++|++...+...++.+|++.|+++.|......+++|+.|.+|++||+....+
T Consensus       216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C  295 (459)
T KOG0288|consen  216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC  295 (459)
T ss_pred             hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe
Confidence            34557788999999999999999999999999999999999999999999999988776799999999999999987666


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CCCCeEEEEeCCCcEEEEEC
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d~~v~iwd~  359 (479)
                      ......   .+.+..+...  ...++++=.|++|+.||......                .+...+++.+.|.++.+.|+
T Consensus       296 ~kt~l~---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDl  370 (459)
T KOG0288|consen  296 SKTVLP---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDL  370 (459)
T ss_pred             eccccc---cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeec
Confidence            544322   2334444443  45677788899999999654321                23455788899999999999


Q ss_pred             CCCeeEEEEccC----CCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc--eEEEEEEcCCC-EEEEEe
Q psy8895         360 AAGKSLCTLTNH----KKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNA--IINSICVNNEG-VLVSGA  431 (479)
Q Consensus       360 ~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~--~v~~l~~~~~~-~l~sg~  431 (479)
                      ++.+...++...    ....+.+.|||++.++++|+.|+ +++|++.++++.+.+.....  .|+++.|+|.| .|++++
T Consensus       371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            988766665432    12478899999999999998875 99999999999888876443  59999999998 899999


Q ss_pred             CCCcEEEE
Q psy8895         432 DNGTMCFW  439 (479)
Q Consensus       432 ~dg~i~lW  439 (479)
                      .++.+.+|
T Consensus       451 k~~~v~lW  458 (459)
T KOG0288|consen  451 KQKAVTLW  458 (459)
T ss_pred             CCcceEec
Confidence            99999999

>KOG0275|consensus

Probab=99.93  E-value=2.8e-24  Score=187.14  Aligned_cols=235  Identities=21%  Similarity=0.386  Sum_probs=189.8

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--------EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      |...-+.|..|+|||++|++||.||.|.+||..+|+..+        .+..+..+|.|++|+.|..++++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            556778999999999999999999999999999987643        355688899999999999999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCC
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHD  351 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d  351 (479)
                      .++++.+.... ...+..++.|+.|+.++..+.+++.|.++++.-+....                 ..+++.++++|.|
T Consensus       291 ri~tG~ClRrF-drAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRF-DRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHh-hhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99999887543 23466789999999999999999999999998766542                 2456789999999


Q ss_pred             CcEEEEECCCCeeEEEEcc--CCCceEEEEEeCCC-cEEEEEcC-CcEEEEeCCCCeEEeeecC---CcceEEEEEEcCC
Q psy8895         352 CTIRLWDLAAGKSLCTLTN--HKKSVRSVALHPTL-YMFASASP-DNIKQWKCPEGKFIQNLPG---HNAIINSICVNNE  424 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~-~~l~s~s~-d~i~~w~~~~~~~~~~~~~---h~~~v~~l~~~~~  424 (479)
                      |+|++|+.++.+++.+++.  .+.+|+++-.-|.. ..++.+.. +.+.+.+. .|+.++.+..   ..+..-+.+++|.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpk  448 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPK  448 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCC
Confidence            9999999999999999864  45688888887753 44555544 45777776 4677766643   2233344477888


Q ss_pred             C-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         425 G-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      | ++...++|+.+..+...+|..-..+.+.
T Consensus       449 GewiYcigED~vlYCF~~~sG~LE~tl~Vh  478 (508)
T KOG0275|consen  449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVH  478 (508)
T ss_pred             CcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence            8 9999999999999999998655555443

>KOG1446|consensus

Probab=99.93  E-value=1.9e-22  Score=175.86  Aligned_cols=239  Identities=17%  Similarity=0.206  Sum_probs=195.5

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEEC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD--DRTVKCWDL  290 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~~wd~  290 (479)
                      +.+..-.+.|.++.|+++|+++++++.|.+++|||..+++...++..++..+..++|......++.++.  |.+||.-++
T Consensus         8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl   87 (311)
T KOG1446|consen    8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL   87 (311)
T ss_pred             cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence            345556788999999999999999999999999999999999999988888889999877777777665  889999999


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEE
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIR  355 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~  355 (479)
                      .+.+.+.-.  .+|...|..+..+|-+..+++++.|++|++||++....               +.+-.+|.+.....|+
T Consensus        88 ~dNkylRYF--~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~Ik  165 (311)
T KOG1446|consen   88 HDNKYLRYF--PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIK  165 (311)
T ss_pred             ecCceEEEc--CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEE
Confidence            877654332  46778899999999999999999999999999884332               2334567777777999


Q ss_pred             EEECCCC--eeEEEEccC---CCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceE---EEEEEcCCC-
Q psy8895         356 LWDLAAG--KSLCTLTNH---KKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAII---NSICVNNEG-  425 (479)
Q Consensus       356 iwd~~~~--~~~~~~~~h---~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v---~~l~~~~~~-  425 (479)
                      +||++.-  .+..++.-.   ....+.|.|||+|+.+.-+... .+.+.|.-+|..++++.++...-   -..+|+||+ 
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9999863  455555432   4568999999999877766665 48899999999999888775432   455889999 


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         426 VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++++|++||+|.+|++++|..+.+++..
T Consensus       246 Fvl~gs~dg~i~vw~~~tg~~v~~~~~~  273 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLETGKKVAVLRGP  273 (311)
T ss_pred             EEEEecCCCcEEEEEcCCCcEeeEecCC
Confidence            8999999999999999999999888664

>KOG0643|consensus

Probab=99.92  E-value=3.3e-23  Score=176.08  Aligned_cols=216  Identities=17%  Similarity=0.285  Sum_probs=184.0

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+.||..+++.+.++.+|.+|+|++.|.+..+|-..+|+.+.++.||.+.|+|++++.+.+.++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-------CCeeEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA-------AGKSLC  366 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~-------~~~~~~  366 (479)
                      +....   ......+..+.|+.++++++....+..                    +..+.|.++|++       ..+++.
T Consensus        85 k~la~---~k~~~~Vk~~~F~~~gn~~l~~tD~~m--------------------g~~~~v~~fdi~~~~~~~~s~ep~~  141 (327)
T KOG0643|consen   85 KQLAT---WKTNSPVKRVDFSFGGNLILASTDKQM--------------------GYTCFVSVFDIRDDSSDIDSEEPYL  141 (327)
T ss_pred             cEEEE---eecCCeeEEEeeccCCcEEEEEehhhc--------------------CcceEEEEEEccCChhhhcccCceE
Confidence            87643   344567889999999887766544310                    122345555554       456778


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCC-eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEG-KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      .+..+++.++.+-|.|-+..++++.++ .|.+||..+| +.+..-..|...|+.+.+++|. +++++|.|.+-++||+.+
T Consensus       142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            888889999999999999988888777 5999999998 4566678899999999999999 999999999999999999


Q ss_pred             CeEEEEEEE
Q psy8895         444 GYNFQRLQV  452 (479)
Q Consensus       444 ~~~~~~~~~  452 (479)
                      =+.++.+..
T Consensus       222 l~v~Kty~t  230 (327)
T KOG0643|consen  222 LEVLKTYTT  230 (327)
T ss_pred             eeeEEEeee
Confidence            888777633

>KOG0310|consensus

Probab=99.92  E-value=1.8e-23  Score=191.71  Aligned_cols=278  Identities=22%  Similarity=0.359  Sum_probs=211.9

Q ss_pred             cceEEEEEccCCce-EEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCc
Q psy8895          34 SSVNTISLHPTIDV-LITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGF  112 (479)
Q Consensus        34 ~~V~~l~~sp~g~~-laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (479)
                      ++|.+|+|+|...+ +|..|+ -.|.|++..+.....++...+..+.++.|..++.       +++        .|    
T Consensus        27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~-------Lla--------aG----   86 (487)
T KOG0310|consen   27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGR-------LLA--------AG----   86 (487)
T ss_pred             CcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCe-------EEE--------cc----
Confidence            68999999997643 444433 3689999988888888888888888888865532       111        11    


Q ss_pred             eeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHH
Q psy8895         113 LLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQ  192 (479)
Q Consensus       113 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  192 (479)
                              ...|.++++|.+.                                                     ..++  
T Consensus        87 --------D~sG~V~vfD~k~-----------------------------------------------------r~iL--  103 (487)
T KOG0310|consen   87 --------DESGHVKVFDMKS-----------------------------------------------------RVIL--  103 (487)
T ss_pred             --------CCcCcEEEecccc-----------------------------------------------------HHHH--
Confidence                    1234455444210                                                     0111  


Q ss_pred             HhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC
Q psy8895         193 AKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP  271 (479)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~  271 (479)
                                          +.+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+......+.+|++-|+|.+++|
T Consensus       104 --------------------R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~  163 (487)
T KOG0310|consen  104 --------------------RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISP  163 (487)
T ss_pred             --------------------HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeecccc
Confidence                                1356799999999999965 5688899999999999999988778999999999999999


Q ss_pred             CCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895         272 RHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH  350 (479)
Q Consensus       272 ~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~  350 (479)
                      ... +++|||.||+|++||++.....  ....++..+|..+.+-|+|..+++++.                         
T Consensus       164 ~~~hivvtGsYDg~vrl~DtR~~~~~--v~elnhg~pVe~vl~lpsgs~iasAgG-------------------------  216 (487)
T KOG0310|consen  164 ANDHIVVTGSYDGKVRLWDTRSLTSR--VVELNHGCPVESVLALPSGSLIASAGG-------------------------  216 (487)
T ss_pred             CCCeEEEecCCCceEEEEEeccCCce--eEEecCCCceeeEEEcCCCCEEEEcCC-------------------------
Confidence            755 7889999999999999865321  123467778999999998887766543                         


Q ss_pred             CCcEEEEECCCC-eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EE
Q psy8895         351 DCTIRLWDLAAG-KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VL  427 (479)
Q Consensus       351 d~~v~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l  427 (479)
                       ..|++||+.+| +.+..+..|...|+|+.+..++..|.+++-|. +++||..+-+.++.+.. +++|.+++++||+ .+
T Consensus       217 -n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~  294 (487)
T KOG0310|consen  217 -NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTV  294 (487)
T ss_pred             -CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceE
Confidence             46899999865 44555556999999999999999999999885 99999988888887764 4678899999988 89


Q ss_pred             EEEeCCCcEEEEecCC
Q psy8895         428 VSGADNGTMCFWDWRT  443 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~  443 (479)
                      +.|..||.+.+=+...
T Consensus       295 viGmsnGlv~~rr~~~  310 (487)
T KOG0310|consen  295 VIGMSNGLVSIRRREV  310 (487)
T ss_pred             EEecccceeeeehhhc
Confidence            9999999988764443

>KOG2096|consensus

Probab=99.92  E-value=4.6e-23  Score=179.32  Aligned_cols=182  Identities=19%  Similarity=0.303  Sum_probs=147.1

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC--
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK--  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~--  294 (479)
                      -|.-.+..+.+..++++|+|++.|..|.+|+++ |+.+..+......-...++||+|+++++++.---+++|.+-..+  
T Consensus       185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG  263 (420)
T KOG2096|consen  185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG  263 (420)
T ss_pred             hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence            466777788888889999999999999999998 88888887766667788999999999999998899999874322  


Q ss_pred             ---cccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------------CCCC
Q psy8895         295 ---APVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------------EESH  343 (479)
Q Consensus       295 ---~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------------~~~~  343 (479)
                         ..... ...++.+.+...+|+++..++++.+.||++++||.+-...                           ..+.
T Consensus       264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g  343 (420)
T KOG2096|consen  264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG  343 (420)
T ss_pred             chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence               11111 1245778899999999999999999999999999653211                           0112


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEc-cCCCceEEEEEeCCCcEEEEEcCCcEEEEe
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLYMFASASPDNIKQWK  399 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~  399 (479)
                      .++..+...+++++..++++...+++ .|...|.+|+|++++++++++++..+++.-
T Consensus       344 ~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  344 DSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             cEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeec
Confidence            24566777889999999998877775 589999999999999999999999887764

>KOG0772|consensus

Probab=99.92  E-value=2.8e-23  Score=191.26  Aligned_cols=200  Identities=19%  Similarity=0.262  Sum_probs=146.1

Q ss_pred             cCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEE-EEe-----cCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         216 SGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-SLT-----GHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~-~~~-----~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .||...++|.+|+|+. +.+++++.||++||||+...+... .+.     +..-++.+++|++|++.+++|..||+|++|
T Consensus       265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W  344 (641)
T KOG0772|consen  265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW  344 (641)
T ss_pred             CCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeee
Confidence            5899999999999975 578999999999999997654322 222     223468899999999999999999999999


Q ss_pred             ECCCCC--cccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-ee
Q psy8895         289 DLEYNK--APVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KS  364 (479)
Q Consensus       289 d~~~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~  364 (479)
                      |.....  ..... ........|.|+.|+++|++|++-+.                         |+++++||++.. ++
T Consensus       345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~-------------------------D~tLKvWDLrq~kkp  399 (641)
T KOG0772|consen  345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF-------------------------DDTLKVWDLRQFKKP  399 (641)
T ss_pred             ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC-------------------------CCceeeeeccccccc
Confidence            974321  11111 11223447999999999988765554                         455555555542 34


Q ss_pred             EEEEccC--CCceEEEEEeCCCcEEEEEcC-------CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         365 LCTLTNH--KKSVRSVALHPTLYMFASASP-------DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h--~~~v~~i~~~~~~~~l~s~s~-------d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      +....+.  ..+-+.++|||+.+++++|+.       +.+.++|..+-+.++.+.-....|..+.+.|.- .|..|+.||
T Consensus       400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG  479 (641)
T KOG0772|consen  400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG  479 (641)
T ss_pred             hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence            4443332  234578899999999988753       138899999888888888777777777788765 888899999


Q ss_pred             cEEEEe
Q psy8895         435 TMCFWD  440 (479)
Q Consensus       435 ~i~lWd  440 (479)
                      ++++|=
T Consensus       480 ~~~vyY  485 (641)
T KOG0772|consen  480 TAHVYY  485 (641)
T ss_pred             ceEEEE
Confidence            999764

>KOG0289|consensus

Probab=99.92  E-value=1.1e-22  Score=183.85  Aligned_cols=279  Identities=21%  Similarity=0.293  Sum_probs=212.1

Q ss_pred             cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCce
Q psy8895          34 SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFL  113 (479)
Q Consensus        34 ~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (479)
                      ..+.++...|..+.++||+.|.++-++|..+++.+.++.||...+..+.|......     ++.++              
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~-----v~~aS--------------  280 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDT-----VITAS--------------  280 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhh-----eeecC--------------
Confidence            46788888888899999999999999999999999999999999999988664321     11111              


Q ss_pred             eeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHH
Q psy8895         114 LSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA  193 (479)
Q Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  193 (479)
                              .+..|++|.....                                                 +         
T Consensus       281 --------ad~~i~vws~~~~-------------------------------------------------s---------  294 (506)
T KOG0289|consen  281 --------ADEIIRVWSVPLS-------------------------------------------------S---------  294 (506)
T ss_pred             --------CcceEEeeccccc-------------------------------------------------c---------
Confidence                    1123444432100                                                 0         


Q ss_pred             hHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec--CCcCEEEEEEcC
Q psy8895         194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG--HVGSVRGLTVSP  271 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~--h~~~v~~v~~~~  271 (479)
                                       .......|.++|+.+..+|.|+||++++.|+...+.|++++..+.....  ..-.+++.+|+|
T Consensus       295 -----------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp  357 (506)
T KOG0289|consen  295 -----------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP  357 (506)
T ss_pred             -----------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC
Confidence                             0012346999999999999999999999999999999999988765443  223589999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC
Q psy8895         272 RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD  351 (479)
Q Consensus       272 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d  351 (479)
                      ||..+.+|..|+.+++||+........  ...+.+.|..++|+.+|-+++                         ++..|
T Consensus       358 DgLifgtgt~d~~vkiwdlks~~~~a~--Fpght~~vk~i~FsENGY~La-------------------------t~add  410 (506)
T KOG0289|consen  358 DGLIFGTGTPDGVVKIWDLKSQTNVAK--FPGHTGPVKAISFSENGYWLA-------------------------TAADD  410 (506)
T ss_pred             CceEEeccCCCceEEEEEcCCcccccc--CCCCCCceeEEEeccCceEEE-------------------------EEecC
Confidence            999999999999999999976553322  245788999999998877665                         45556


Q ss_pred             CcEEEEECCCCeeEEEEccC-CCceEEEEEeCCCcEEEEEcCC-cEEEEeC--CCCeEEeeecCCcceEEEEEEcCCC-E
Q psy8895         352 CTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTLYMFASASPD-NIKQWKC--PEGKFIQNLPGHNAIINSICVNNEG-V  426 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~--~~~~~~~~~~~h~~~v~~l~~~~~~-~  426 (479)
                      +.|++||++..+.+.++.-. ...|.+++|++.+.+|+.++.+ .|.+++-  .+...+..+..|.+..+++.|..+. +
T Consensus       411 ~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  411 GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY  490 (506)
T ss_pred             CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence            66777788777766666532 2369999999999999988666 2444442  2456677788899999999998877 8


Q ss_pred             EEEEeCCCcEEEEec
Q psy8895         427 LVSGADNGTMCFWDW  441 (479)
Q Consensus       427 l~sg~~dg~i~lWd~  441 (479)
                      ++++|.|..++++-+
T Consensus       491 l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  491 LASTSMDAILRLYAL  505 (506)
T ss_pred             EeeccchhheEEeec
Confidence            999999999888754

>KOG0264|consensus

Probab=99.92  E-value=7.7e-23  Score=186.20  Aligned_cols=205  Identities=24%  Similarity=0.363  Sum_probs=164.0

Q ss_pred             EecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCc-------eEEEEecCCcCEEEEEEcCCCC-EEEEEECCCc
Q psy8895         214 VISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGK-------LKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRT  284 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~-------~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~  284 (479)
                      .|.||.+.-++++|++.. -.|++++.|++|++||+....       ....+.+|...|..++|++... .+.++++|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            356777777778888753 479999999999999997542       3457899999999999998644 6678999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-e
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-K  363 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~  363 (479)
                      +.|||++............+.+.+.|++|+|-+..                        .|||||.|++|++||++.- +
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~------------------------ilAT~S~D~tV~LwDlRnL~~  307 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEF------------------------ILATGSADKTVALWDLRNLNK  307 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCc------------------------eEEeccCCCcEEEeechhccc
Confidence            99999986322112222456788999999986543                        3688888999999999864 5


Q ss_pred             eEEEEccCCCceEEEEEeCC-CcEEEEEcCCc-EEEEeCCCC--------------eEEeeecCCcceEEEEEEcCCC--
Q psy8895         364 SLCTLTNHKKSVRSVALHPT-LYMFASASPDN-IKQWKCPEG--------------KFIQNLPGHNAIINSICVNNEG--  425 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d~-i~~w~~~~~--------------~~~~~~~~h~~~v~~l~~~~~~--  425 (479)
                      ++.++.+|+..|..+.|+|. ...||+++.|+ +.+||+..-              +++....||...|..+.++|..  
T Consensus       308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW  387 (422)
T KOG0264|consen  308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW  387 (422)
T ss_pred             CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence            78999999999999999996 46778877774 999998531              2356778999999999999877  


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy8895         426 VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~  442 (479)
                      .++|.++|+.+.||...
T Consensus       388 ~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  388 TIASVAEDNILQIWQMA  404 (422)
T ss_pred             EEEEecCCceEEEeecc
Confidence            79999999999999976

>KOG0647|consensus

Probab=99.91  E-value=6.3e-23  Score=177.34  Aligned_cols=229  Identities=21%  Similarity=0.298  Sum_probs=172.7

Q ss_pred             CccEEEEEEcC-CCcEEEEEeCCCeEEEEECCC-Cce-EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         219 LGWVRCVAVEP-GNEWFATGSADKIIKVWDLAT-GKL-KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       219 ~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~-~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+.|.+++|+| ...++++||+|++||+|+++. |.. .+....|.++|.+++|+.||..+++|+.|+++++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            57789999999 456677999999999999976 333 244567899999999999999999999999999999998754


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCC--------------CCCeEEEEeCCCcEEEEEC
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGS--RLITTEADKTVKLYKEDDSATE--------------ESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~--------------~~~~l~sgs~d~~v~iwd~  359 (479)
                      ...   ..|..++..+.|-+...  .|++|+-|++++.||.+....-              ....++.+..++.|.+|++
T Consensus       107 ~~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL  183 (347)
T KOG0647|consen  107 SQV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL  183 (347)
T ss_pred             eee---eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence            322   23667888888877655  8999999999999998764321              1235678889999999999


Q ss_pred             CCCeeE-EEEc-cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCC--eEEeeecCCcc---------eEEEEEEcCCC
Q psy8895         360 AAGKSL-CTLT-NHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEG--KFIQNLPGHNA---------IINSICVNNEG  425 (479)
Q Consensus       360 ~~~~~~-~~~~-~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~--~~~~~~~~h~~---------~v~~l~~~~~~  425 (479)
                      +.+... +..+ ...-.+++|+..++...++-|+-. .+.+..++.+  +.-.+++.|+.         .|++++|.|..
T Consensus       184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h  263 (347)
T KOG0647|consen  184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH  263 (347)
T ss_pred             CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence            765322 1211 123468999998887766766644 5666666554  33345556652         58889999865


Q ss_pred             -EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         426 -VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                       .|+|.|.||+..+||-.....+...
T Consensus       264 gtlvTaGsDGtf~FWDkdar~kLk~s  289 (347)
T KOG0647|consen  264 GTLVTAGSDGTFSFWDKDARTKLKTS  289 (347)
T ss_pred             ceEEEecCCceEEEecchhhhhhhcc
Confidence             9999999999999997655555443

>KOG0641|consensus

Probab=99.91  E-value=2.4e-21  Score=160.85  Aligned_cols=223  Identities=22%  Similarity=0.327  Sum_probs=173.9

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-----EEEEecCCcCEEEEEEcCC----CCEEEEEE-CCCcE
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-----KLSLTGHVGSVRGLTVSPR----HPYLFSCG-DDRTV  285 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-----~~~~~~h~~~v~~v~~~~~----~~~l~s~~-~d~~i  285 (479)
                      .-|.+.|.|.+|+|.|++|++||+|.+|++-..+...+     -..+.+|.+.|+.++|-.+    +..|++++ .|..|
T Consensus        86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i  165 (350)
T KOG0641|consen   86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI  165 (350)
T ss_pred             cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence            35889999999999999999999999999987654322     2468899999999999654    45666654 45566


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------------CC
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------------EE  341 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------------~~  341 (479)
                      ++=|...++.....  .++.+.|..+ ++.++-.+++|+.|++|+.||++....                        +.
T Consensus       166 y~tdc~~g~~~~a~--sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdps  242 (350)
T KOG0641|consen  166 YITDCGRGQGFHAL--SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPS  242 (350)
T ss_pred             EEeecCCCCcceee--cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCC
Confidence            66666555443322  3456666655 456788999999999999999764211                        23


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE-----EeeecCCcce
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF-----IQNLPGHNAI  415 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~-----~~~~~~h~~~  415 (479)
                      +.++++|..|....+||++.++++..+..|...|+++-|+|...++.+++.|. |++-|+. |.+     +.....|+..
T Consensus       243 grll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk  321 (350)
T KOG0641|consen  243 GRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDK  321 (350)
T ss_pred             cceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCceEEEEeccCc
Confidence            46789999999999999999999999999999999999999999999999885 9988874 332     2234468877


Q ss_pred             EEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         416 INSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       416 v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +-...+.|.. -+++.+.|+++.+|-+.
T Consensus       322 ~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  322 AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             eEEEEecCccceeeeccCcceEEEeccC
Confidence            7777888877 68999999999999754

>KOG0308|consensus

Probab=99.91  E-value=3e-23  Score=196.14  Aligned_cols=204  Identities=21%  Similarity=0.356  Sum_probs=169.7

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEEecCCcCEEEEEE-cCCCCEEEEEECCCcEEEEECCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSLTGHVGSVRGLTV-SPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +.|.++|..+.+..+|+.|+|+|.|-+|++|+...+  .++.++..|.+-|.|+++ .++...+++||-|+.|.+||++.
T Consensus        70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~  149 (735)
T KOG0308|consen   70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINT  149 (735)
T ss_pred             hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccC
Confidence            357778888888788999999999999999999877  677889999999999999 78888999999999999999986


Q ss_pred             CCc--ccC-------CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         293 NKA--PVQ-------PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       293 ~~~--~~~-------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      +..  ...       ....++..++++++-++.+                         ..+++|+-.+-+++||.++.+
T Consensus       150 ~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-------------------------t~ivsGgtek~lr~wDprt~~  204 (735)
T KOG0308|consen  150 GTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-------------------------TIIVSGGTEKDLRLWDPRTCK  204 (735)
T ss_pred             cchhhhhhccccccccCCCCCccceeeeecCCcc-------------------------eEEEecCcccceEEecccccc
Confidence            633  110       0011233344455444433                         346777888889999999999


Q ss_pred             eEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         364 SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      .+..+.+|...|+.+-.++||..+.+++.| .|++||+...+++.++..|...|+++..+|+- .+.+|+.||.|..=|+
T Consensus       205 kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl  284 (735)
T KOG0308|consen  205 KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDL  284 (735)
T ss_pred             ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEeccc
Confidence            999999999999999999999888888777 49999999999999999999999999999887 8999999999999888


Q ss_pred             CCC
Q psy8895         442 RTG  444 (479)
Q Consensus       442 ~~~  444 (479)
                      ++-
T Consensus       285 ~n~  287 (735)
T KOG0308|consen  285 RNP  287 (735)
T ss_pred             CCc
Confidence            874

>KOG0301|consensus

Probab=99.91  E-value=1.2e-22  Score=193.56  Aligned_cols=240  Identities=25%  Similarity=0.405  Sum_probs=193.7

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--EEEecCCcCEEE-EEEcC-CCCEEEEEECCCcE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK--LSLTGHVGSVRG-LTVSP-RHPYLFSCGDDRTV  285 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~--~~~~~h~~~v~~-v~~~~-~~~~l~s~~~d~~i  285 (479)
                      ++.+.+.||...|..+++.+ +..++++|.|+++++|+-...+..  ..+.+|.+.|.. +++.+ ++-.+++|+.|.++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i   83 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI   83 (745)
T ss_pred             eeEEEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence            45678899999999988764 558999999999999998665543  457788888877 78775 44458899999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------CCCCeEEEEeCC
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------EESHPVITGSHD  351 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------~~~~~l~sgs~d  351 (479)
                      .+|......+....  .+|++.|+++....++. +++|+-|.++++|.......              -....++|||.|
T Consensus        84 ~v~~~~~~~P~~~L--kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~~~vTgsaD  160 (745)
T KOG0301|consen   84 IVFKLSQAEPLYTL--KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPENTYVTGSAD  160 (745)
T ss_pred             EEEecCCCCchhhh--hccccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchheeeeeecCCCcEEeccCc
Confidence            99998765544332  46778899998777666 99999999999998654321              122478999999


Q ss_pred             CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEc-CCCEEEEE
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVN-NEGVLVSG  430 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-~~~~l~sg  430 (479)
                      .+|++|.-  ++.+++|.+|.+.|+.+++-|+...+.++.++.|+.|+. +|+++.++.||+..|.++... +++.++|+
T Consensus       161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             ceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence            99999975  688999999999999999999877655444556999998 899999999999999999955 55699999


Q ss_pred             eCCCcEEEEecCCCeEEEEEEEeEecCC
Q psy8895         431 ADNGTMCFWDWRTGYNFQRLQVRCVSGF  458 (479)
Q Consensus       431 ~~dg~i~lWd~~~~~~~~~~~~~~~~~~  458 (479)
                      ++|++++||+..  ++.|.+++..++.|
T Consensus       238 gEDrtlriW~~~--e~~q~I~lPttsiW  263 (745)
T KOG0301|consen  238 GEDRTLRIWKKD--ECVQVITLPTTSIW  263 (745)
T ss_pred             cCCceEEEeecC--ceEEEEecCccceE
Confidence            999999999975  88888877754444

>KOG0299|consensus

Probab=99.91  E-value=3.3e-22  Score=182.07  Aligned_cols=229  Identities=29%  Similarity=0.426  Sum_probs=184.4

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE-E---E-------------E-ecCCcCEEEEEEcCCC
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK-L---S-------------L-TGHVGSVRGLTVSPRH  273 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~-~---~-------------~-~~h~~~v~~v~~~~~~  273 (479)
                      +..+..|.-++.|++++|++++.++++.|++|.-|++.+++.. .   .             - .+|...+.++++++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4567789999999999999999999999999999999887632 0   0             1 2678889999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------  339 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------  339 (479)
                      ++|++|+.|..|.|||.++.+....  ...+.+.|.+++|-.....+++++.|.++++|+.+....              
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~--~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKV--FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhc--ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            9999999999999999988776544  245778899999998889999999999999999765321              


Q ss_pred             ---CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeec-CC--
Q psy8895         340 ---EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLP-GH--  412 (479)
Q Consensus       340 ---~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~-~h--  412 (479)
                         .....+-.|+.|+++++|.+.. .....+.+|.+.+.+++|-.+..+ ++|+++ .|.+|++.+.+++.+.. .|  
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~Hf-vsGSdnG~IaLWs~~KKkplf~~~~AHgv  370 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDEHF-VSGSDNGSIALWSLLKKKPLFTSRLAHGV  370 (479)
T ss_pred             chhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecccce-eeccCCceEEEeeecccCceeEeeccccc
Confidence               1112334566999999999954 344456688999999999876655 555555 69999998887766532 22  


Q ss_pred             ---------cceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         413 ---------NAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       413 ---------~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                               +.+|++|+..|.. ++++|+.+|.||+|-+..|
T Consensus       371 ~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  371 IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence                     2389999999887 9999999999999999988

>KOG1036|consensus

Probab=99.91  E-value=4.5e-22  Score=172.74  Aligned_cols=273  Identities=19%  Similarity=0.266  Sum_probs=201.5

Q ss_pred             CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      ...+.|.+|.|+|.+..|+.+|=||++|++|+.+......+. |+.++..+.|.++..               .+     
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~---------------~~-----   69 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADEST---------------IV-----   69 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCce---------------EE-----
Confidence            346789999999999999999999999999998775444443 778888888855311               01     


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                              .+..+|.++.+|++...                                                       
T Consensus        70 --------~G~~dg~vr~~Dln~~~-------------------------------------------------------   86 (323)
T KOG1036|consen   70 --------TGGLDGQVRRYDLNTGN-------------------------------------------------------   86 (323)
T ss_pred             --------EeccCceEEEEEecCCc-------------------------------------------------------
Confidence                    12233455544432100                                                       


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEc
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS  270 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~  270 (479)
                                           ...+..|.++|.|+...+....+++||+|++|++||.+.......+..- ..|.++...
T Consensus        87 ---------------------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~  144 (323)
T KOG1036|consen   87 ---------------------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVS  144 (323)
T ss_pred             ---------------------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC-ceEEEEecc
Confidence                                 0124469999999999998889999999999999999875554444433 378887775


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895         271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH  350 (479)
Q Consensus       271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~  350 (479)
                        +..|+.|..|..+.+||+++.....+.....-...+.|+++.|++.-.++++.+|.+.+=..+.....          
T Consensus       145 --g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~----------  212 (323)
T KOG1036|consen  145 --GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEA----------  212 (323)
T ss_pred             --CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHH----------
Confidence              45788889999999999998776654434445567899999998888888888888776544433111          


Q ss_pred             CCcEEEEECCCCeeEEEEccCC---------CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHK---------KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~---------~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                                 .+....|+.|+         .+|++|+|+|-...|++|+.|+ |.+||..+.+.++.+..-...|.+++
T Consensus       213 -----------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sls  281 (323)
T KOG1036|consen  213 -----------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLS  281 (323)
T ss_pred             -----------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEE
Confidence                       11222333332         3799999999988899988886 89999999999988888888899999


Q ss_pred             EcCCC-EEEEEeC
Q psy8895         421 VNNEG-VLVSGAD  432 (479)
Q Consensus       421 ~~~~~-~l~sg~~  432 (479)
                      |+.+| .||.++.
T Consensus       282 fs~dG~~LAia~s  294 (323)
T KOG1036|consen  282 FSMDGSLLAIASS  294 (323)
T ss_pred             eccCCCeEEEEec
Confidence            99999 8887764

>KOG0277|consensus

Probab=99.91  E-value=2.4e-23  Score=175.66  Aligned_cols=203  Identities=18%  Similarity=0.254  Sum_probs=164.8

Q ss_pred             CccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCCc
Q psy8895         219 LGWVRCVAVEPG-NEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       219 ~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+.+..++|+++ .+.+++++.||+++|||+... .++..++.|..+|.++.+++. ...++++|.|++||+||....+.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S  139 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS  139 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence            467889999985 467889999999999996533 567788999999999999985 45677889999999999876554


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      ...  ..+++..|+..+|+|...                        +.++++|.|+++++||++.......++.|...|
T Consensus       140 v~T--f~gh~~~Iy~a~~sp~~~------------------------nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei  193 (311)
T KOG0277|consen  140 VQT--FNGHNSCIYQAAFSPHIP------------------------NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI  193 (311)
T ss_pred             eEe--ecCCccEEEEEecCCCCC------------------------CeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence            433  245777888888888532                        346788889999999988643333488899999


Q ss_pred             EEEEEeC-CCcEEEEEcCCc-EEEEeCCCC-eEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEE
Q psy8895         376 RSVALHP-TLYMFASASPDN-IKQWKCPEG-KFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       376 ~~i~~~~-~~~~l~s~s~d~-i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .++.|+. +..++++++.|+ |+.||+.+- ..+..+.+|.-.|..+.+||..  .|||++.|-++||||...+...
T Consensus       194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~  270 (311)
T KOG0277|consen  194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA  270 (311)
T ss_pred             EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh
Confidence            9999987 667888888886 999999765 4578899999999999999986  8999999999999998866433

>KOG0300|consensus

Probab=99.91  E-value=3e-23  Score=180.29  Aligned_cols=232  Identities=25%  Similarity=0.434  Sum_probs=175.6

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      +++.+.+.||.+.|..++.......+.++|.|.+-+||.+++|.|+..+.||.++|+++.|++.+.++++++.|++-.||
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW  217 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW  217 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence            44556788999999999987766789999999999999999999999999999999999999999999999999999999


Q ss_pred             ECC----CCCcccCCCCCCCCCCeEEEEEeCCCCEEEE--EeCC-CeEEEE--eCCC--------CCCCCCCeEEEEeCC
Q psy8895         289 DLE----YNKAPVQPGSMDSESGIFSMTFDNSGSRLIT--TEAD-KTVKLY--KEDD--------SATEESHPVITGSHD  351 (479)
Q Consensus       289 d~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d-~~i~~~--~~~~--------~~~~~~~~l~sgs~d  351 (479)
                      ...    ..+...... ...+....+-.   .......  ...| .+|++-  .+..        ......+.++++|+|
T Consensus       218 ~~av~~~vP~~~a~~~-hSsEeE~e~sD---e~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSD-HSSEEEEEHSD---EHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             HHhhcCcCCCCCCCCC-CCchhhhhccc---ccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecc
Confidence            732    111100000 00000000000   0000000  0111 122221  1111        012234678999999


Q ss_pred             CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC-eEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG-KFIQNLPGHNAIINSICVNNEGVLVS  429 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~~l~s  429 (479)
                      ++..+||+++++++..+.+|+...+.++-+|...++++++.|. .++||.... .-+..++||...|+++.|..|..+++
T Consensus       294 RTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVS  373 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVS  373 (481)
T ss_pred             ccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceee
Confidence            9999999999999999999999999999999999999999996 999999754 34667899999999999999999999


Q ss_pred             EeCCCcEEEEecCCC
Q psy8895         430 GADNGTMCFWDWRTG  444 (479)
Q Consensus       430 g~~dg~i~lWd~~~~  444 (479)
                      |++|.+|++||+++-
T Consensus       374 gSDDrTvKvWdLrNM  388 (481)
T KOG0300|consen  374 GSDDRTVKVWDLRNM  388 (481)
T ss_pred             cCCCceEEEeeeccc
Confidence            999999999999854

>KOG1408|consensus

Probab=99.90  E-value=2.2e-21  Score=185.13  Aligned_cols=230  Identities=16%  Similarity=0.270  Sum_probs=164.7

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec---------------C---------CcCEEEEEEcCCCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG---------------H---------VGSVRGLTVSPRHP  274 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~---------------h---------~~~v~~v~~~~~~~  274 (479)
                      +....|++.+  .++|+.|+.+|+|++++..+-....++..               |         -...-.+.|++...
T Consensus       260 TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~  337 (1080)
T KOG1408|consen  260 TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTD  337 (1080)
T ss_pred             ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCc
Confidence            3445566665  67999999999999999876443322210               1         01234678898888


Q ss_pred             EEEEEECCCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeCC-----------CCEEEEEeCCCeEEEEeCCCCCC---
Q psy8895         275 YLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNS-----------GSRLITTEADKTVKLYKEDDSAT---  339 (479)
Q Consensus       275 ~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~-----------~~~l~~~~~d~~i~~~~~~~~~~---  339 (479)
                      .|...-.|+++++||++..+.+-. ....-+...||.+..-|-           ...+++++.|++|++|++.....   
T Consensus       338 klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v  417 (1080)
T KOG1408|consen  338 KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV  417 (1080)
T ss_pred             eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence            888888999999999986543322 122334556666544331           13478999999999999754110   


Q ss_pred             ---------------------------------------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         340 ---------------------------------------------------EESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       340 ---------------------------------------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                                                                         ++.+.|++|..-|++++||+..-+....+
T Consensus       418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~  497 (1080)
T KOG1408|consen  418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM  497 (1080)
T ss_pred             eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe
Confidence                                                               23456889999999999999988888889


Q ss_pred             ccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCC-CeEEeeecCCcceEEEEEE----------------------
Q psy8895         369 TNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPE-GKFIQNLPGHNAIINSICV----------------------  421 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~-~~~~~~~~~h~~~v~~l~~----------------------  421 (479)
                      +.|+..|.++.++..   .++||+++.|. |.++|... -.+++++.+|...|+++.|                      
T Consensus       498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~  577 (1080)
T KOG1408|consen  498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV  577 (1080)
T ss_pred             ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence            999999999999853   57999999997 89999853 3556777777776666554                      


Q ss_pred             ---------------------------cCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         422 ---------------------------NNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       422 ---------------------------~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                                                 .|.. +++++..|+.|+|||+++|...+.+
T Consensus       578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~F  634 (1080)
T KOG1408|consen  578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSF  634 (1080)
T ss_pred             hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeee
Confidence                                       2222 5677888888899998888777665

>KOG0641|consensus

Probab=99.90  E-value=6.3e-21  Score=158.42  Aligned_cols=253  Identities=22%  Similarity=0.313  Sum_probs=175.3

Q ss_pred             ecCCcccceEEEEEccCCceEEEecCCCeEEEE--eecccce---EeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          28 HYHGHLSSVNTISLHPTIDVLITAGRDSTARVW--DVRTKAN---VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriW--d~~t~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      ..+-|.++|.|.+|+|+|++|||||.|++||+-  |.+|...   -.+|.-|.+.+..+.|..+... +.+.+.  +   
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s-~~~il~--s---  157 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPES-GGAILA--S---  157 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCc-CceEEE--e---
Confidence            356799999999999999999999999999984  4444332   2345567777777777654322 111110  0   


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                          .|.              |..                                    +.++..+.            
T Consensus       158 ----~ga--------------gdc------------------------------------~iy~tdc~------------  171 (350)
T KOG0641|consen  158 ----AGA--------------GDC------------------------------------KIYITDCG------------  171 (350)
T ss_pred             ----cCC--------------Ccc------------------------------------eEEEeecC------------
Confidence                000              000                                    00110000            


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec--C
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG--H  260 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~--h  260 (479)
                                               ....+..+.||++-|.++--- +|-.+++||.|.+||+||++-..++.++..  |
T Consensus       172 -------------------------~g~~~~a~sghtghilalysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~  225 (350)
T KOG0641|consen  172 -------------------------RGQGFHALSGHTGHILALYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH  225 (350)
T ss_pred             -------------------------CCCcceeecCCcccEEEEEEe-cCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence                                     011234578999999987532 478999999999999999998877766532  2


Q ss_pred             -----CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         261 -----VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       261 -----~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                           ...|.++++.|.|++|++|..|.++.+||++.++.+...  ..+...|.|+.|+|...++++++.|..|++=|+.
T Consensus       226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f--~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF--HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee--CCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence                 257899999999999999999999999999987765443  4567889999999988887777666666665543


Q ss_pred             CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCC
Q psy8895         336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCP  401 (479)
Q Consensus       336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~  401 (479)
                      ....                     ..-++.....|...+-.+-|+|....|.+.+.|+ +.+|-++
T Consensus       304 gdla---------------------~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  304 GDLA---------------------HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             cchh---------------------hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            2211                     1223334446888888899999888888888775 8899753

>KOG0308|consensus

Probab=99.90  E-value=6.1e-23  Score=194.07  Aligned_cols=200  Identities=24%  Similarity=0.427  Sum_probs=157.5

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCC------ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         229 PGNEWFATGSADKIIKVWDLATG------KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      |.+++|+|||.||.|++|+...-      ..+..++.|.++|..++...+++.|+++|.|-+|++|+.......-...-.
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir  114 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR  114 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence            56789999999999999998643      236678899999999999999999999999999999998765311111113


Q ss_pred             CCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----------eEEEEc-c
Q psy8895         303 DSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----------SLCTLT-N  370 (479)
Q Consensus       303 ~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----------~~~~~~-~  370 (479)
                      .|...|-|+++. ++..                         .+++|+-|+.|.+||++++.          ....+. +
T Consensus       115 ~H~DYVkcla~~ak~~~-------------------------lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG  169 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNE-------------------------LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG  169 (735)
T ss_pred             cccchheeeeecccCce-------------------------eEEecCCCccEEEEEccCcchhhhhhccccccccCCCC
Confidence            455667777763 3323                         35566666666666666541          122233 7


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         371 HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      +..+|.+++-++.+.++++|+..+ +++||..+++.+..+.||...|.++..++|| .++|+|+||+|++||+....|+.
T Consensus       170 ~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  170 PKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             CccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence            888999999999999999998776 9999999999999999999999999999999 99999999999999998876766


Q ss_pred             EEEEe
Q psy8895         449 RLQVR  453 (479)
Q Consensus       449 ~~~~~  453 (479)
                      ++++.
T Consensus       250 T~~vH  254 (735)
T KOG0308|consen  250 TYIVH  254 (735)
T ss_pred             eEEec
Confidence            65544

>KOG2445|consensus

Probab=99.89  E-value=5.9e-21  Score=165.59  Aligned_cols=228  Identities=23%  Similarity=0.405  Sum_probs=176.5

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~w  288 (479)
                      ..+|.+-|.|+.|++-|+.+|+++.|++|+|||.++.    .+....+.|.++|.-+.|.+  -|+.+++|+.|+++.+|
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            3579999999999999999999999999999997543    45667889999999999854  48899999999999999


Q ss_pred             ECCCCC--c-----ccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCC--------------------
Q psy8895         289 DLEYNK--A-----PVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSAT--------------------  339 (479)
Q Consensus       289 d~~~~~--~-----~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~--------------------  339 (479)
                      .=....  .     .....-.+..+.+..+.|.|.  |-.+++++.||++++|+..+...                    
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            642111  1     111112345678999999985  56889999999999998533110                    


Q ss_pred             -------------CCCCeEEEEeCC-----CcEEEEECCCC----eeEEEEccCCCceEEEEEeCC----CcEEEEEcCC
Q psy8895         340 -------------EESHPVITGSHD-----CTIRLWDLAAG----KSLCTLTNHKKSVRSVALHPT----LYMFASASPD  393 (479)
Q Consensus       340 -------------~~~~~l~sgs~d-----~~v~iwd~~~~----~~~~~~~~h~~~v~~i~~~~~----~~~l~s~s~d  393 (479)
                                   ...+.++.|+.+     +.++||....+    ..+.++.+|..+|++|+|.|.    .+++|.++.|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence                         012346666654     48899977654    345678899999999999996    4788999999


Q ss_pred             cEEEEeCCCC--------------------eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         394 NIKQWKCPEG--------------------KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       394 ~i~~w~~~~~--------------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +|+||.+...                    +.+..+.+|++.|+.+.++=-| +|+|.|+||.||+|-..
T Consensus       249 gv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  249 GVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             cEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            8999987621                    1244577899999999999888 89999999999999744

>KOG0268|consensus

Probab=99.89  E-value=9.1e-23  Score=180.36  Aligned_cols=227  Identities=22%  Similarity=0.383  Sum_probs=178.5

Q ss_pred             EEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         213 RVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      ..+.||.+.|.|++=+|.. ..++||+.||.|+|||+....+...+.+|.+.|..++++.  ..++++|+|++|+.|.++
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~  137 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID  137 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence            3568999999999999976 7899999999999999999999999999999999999987  578899999999999986


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCc
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------EESHPVITGSHDCT  353 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~  353 (479)
                      .. ...   .....+.+..+.-......+++++.  .|.+||......                  .+...|+++..|+.
T Consensus       138 ~~-p~~---tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  138 GP-PLH---TILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             CC-cce---eeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence            53 111   1122233333433334455555543  578888643221                  12346888999999


Q ss_pred             EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCC-eEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895         354 IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEG-KFIQNLPGHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       354 v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~-~l~sg  430 (479)
                      |.+||++++.+++.+. ..-.-+.|+|+|...-|+++++| ++..+|...- +.+....+|...|..+.|||-| -++||
T Consensus       212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             eEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            9999999999887653 23445789999999999999999 4888987554 4567788999999999999999 79999


Q ss_pred             eCCCcEEEEecCCCeEEE
Q psy8895         431 ADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       431 ~~dg~i~lWd~~~~~~~~  448 (479)
                      |.|.+||||..+.+....
T Consensus       291 syDksIRIf~~~~~~SRd  308 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRD  308 (433)
T ss_pred             cccceEEEeecCCCcchh
Confidence            999999999998775443

>KOG0646|consensus

Probab=99.89  E-value=7.7e-22  Score=180.07  Aligned_cols=209  Identities=26%  Similarity=0.392  Sum_probs=163.9

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      .++|.|++-+|+|.+++.|...+.|.+|.+.+|..+..+.+|-..|+++.|+.|+.+++|||.||.|.+|++...-....
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999998742211100


Q ss_pred             C-------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         299 P-------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       299 ~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      .       ...+|.-.|.++...+.                       ....+++|+|.|.++++||+..+..+.++. .
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~G-----------------------g~~~rl~TaS~D~t~k~wdlS~g~LLlti~-f  216 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSG-----------------------GTNARLYTASEDRTIKLWDLSLGVLLLTIT-F  216 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCC-----------------------CccceEEEecCCceEEEEEeccceeeEEEe-c
Confidence            0       00112222333332222                       123568999999999999999999988875 4


Q ss_pred             CCceEEEEEeCCCcEEEEEcCC-cEEEEeCC----------------CCeEEeeecCCcc--eEEEEEEcCCC-EEEEEe
Q psy8895         372 KKSVRSVALHPTLYMFASASPD-NIKQWKCP----------------EGKFIQNLPGHNA--IINSICVNNEG-VLVSGA  431 (479)
Q Consensus       372 ~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~----------------~~~~~~~~~~h~~--~v~~l~~~~~~-~l~sg~  431 (479)
                      +.++.+++++|....+..|+.+ .|.+.++.                .+.....+.||.+  .|+||+++-|| .|++|+
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd  296 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD  296 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence            6789999999987666555554 56554432                1233556789988  99999999999 899999


Q ss_pred             CCCcEEEEecCCCeEEEEEE
Q psy8895         432 DNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       432 ~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .||.+.+||+.+.+++++++
T Consensus       297 ~dg~VcvWdi~S~Q~iRtl~  316 (476)
T KOG0646|consen  297 EDGKVCVWDIYSKQCIRTLQ  316 (476)
T ss_pred             CCCCEEEEecchHHHHHHHh
Confidence            99999999999988887765

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=6.9e-20  Score=172.80  Aligned_cols=225  Identities=14%  Similarity=0.162  Sum_probs=163.1

Q ss_pred             EEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCCC
Q psy8895         223 RCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       223 ~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .+++|+|+++.+ ++++.++.|++||..+++....+..+.. +..++++|+++.++. ++.|+.+++||+++.+..... 
T Consensus        34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-  111 (300)
T TIGR03866        34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI-  111 (300)
T ss_pred             CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-
Confidence            346788888866 6777889999999999988776665543 467899999987754 456899999999865433221 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCC----------------CCCCCeE-EEEeCCCcEEEEECCCC
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADK-TVKLYKEDDSA----------------TEESHPV-ITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~----------------~~~~~~l-~sgs~d~~v~iwd~~~~  362 (479)
                        .....+..+.++|++..++++..++ .+.+|+.....                ..++..+ +++..++.|++||++++
T Consensus       112 --~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~  189 (300)
T TIGR03866       112 --PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR  189 (300)
T ss_pred             --eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence              1123356799999999999888765 45566754321                1234445 45556999999999998


Q ss_pred             eeEEEEccCC-----C--ceEEEEEeCCCcEE-EE-EcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE-e
Q psy8895         363 KSLCTLTNHK-----K--SVRSVALHPTLYMF-AS-ASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG-A  431 (479)
Q Consensus       363 ~~~~~~~~h~-----~--~v~~i~~~~~~~~l-~s-~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg-~  431 (479)
                      +.+..+..+.     .  ....++|+|++..+ ++ +.++.+.+||..+++....+. +...+.+++|+|++ .|+++ +
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~  268 (300)
T TIGR03866       190 KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNG  268 (300)
T ss_pred             eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcC
Confidence            8777654221     1  23468899998864 33 334469999999888776553 33468899999998 67665 5


Q ss_pred             CCCcEEEEecCCCeEEEEEEE
Q psy8895         432 DNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       432 ~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      .++.|++||+++++.++++++
T Consensus       269 ~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       269 VSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEEc
Confidence            699999999999999888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283|consensus

Probab=99.89  E-value=6e-22  Score=193.39  Aligned_cols=202  Identities=17%  Similarity=0.284  Sum_probs=158.3

Q ss_pred             ec-CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--------------------------------C----------
Q psy8895         215 IS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--------------------------------G----------  251 (479)
Q Consensus       215 ~~-~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--------------------------------~----------  251 (479)
                      +. .|.+.|.++.|++||+|||+||.|+.|+||.+..                                .          
T Consensus       262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~  341 (712)
T KOG0283|consen  262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK  341 (712)
T ss_pred             cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence            44 7999999999999999999999999999997654                                0          


Q ss_pred             ------------------ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEE
Q psy8895         252 ------------------KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTF  313 (479)
Q Consensus       252 ------------------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~  313 (479)
                                        ++...+.||.+.|.++.|+.++ +|+++|.|+++|||++....++..   ..|..-|+|++|
T Consensus       342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~---F~HndfVTcVaF  417 (712)
T KOG0283|consen  342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKV---FSHNDFVTCVAF  417 (712)
T ss_pred             ccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeE---EecCCeeEEEEe
Confidence                              0112367899999999999865 889999999999999987666543   357788999999


Q ss_pred             eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC
Q psy8895         314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD  393 (479)
Q Consensus       314 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d  393 (479)
                      +|...                        .++++|+-|+.||||++...+.+....- ...|++++|.|+|+..+.|+-+
T Consensus       418 nPvDD------------------------ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~  472 (712)
T KOG0283|consen  418 NPVDD------------------------RYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFN  472 (712)
T ss_pred             cccCC------------------------CcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEec
Confidence            99533                        3467888888888888887666655433 3789999999999999888877


Q ss_pred             c-EEEEeCCCCeEEeeec---------CCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeE
Q psy8895         394 N-IKQWKCPEGKFIQNLP---------GHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       394 ~-i~~w~~~~~~~~~~~~---------~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      + .++|+....++.....         .|+ .|+.+-+.|..  .++..+.|..|||+|.++...
T Consensus       473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l  536 (712)
T KOG0283|consen  473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL  536 (712)
T ss_pred             cEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh
Confidence            5 7888887666544321         133 79999877544  577778999999999865433

>KOG1332|consensus

Probab=99.89  E-value=1.5e-21  Score=164.06  Aligned_cols=228  Identities=22%  Similarity=0.324  Sum_probs=181.0

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG---KLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~---~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd  289 (479)
                      -.+|.+.|-.+.+.--|+.||++|.|++|||+..++.   +.+.++.||.++|+.++|..  .|.+|++++.||.|.+|.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            4568888888777777999999999999999999765   45778999999999999966  788999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCC-C-------------------C-------
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSA-T-------------------E-------  340 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~-~-------------------~-------  340 (479)
                      -+.++-....-...+...+.+++|.|.  |-.|++++.||.|.+.+.+... .                   +       
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            877654433333457788999999886  4578999999999998765430 0                   0       


Q ss_pred             -------CCCeEEEEeCCCcEEEEECCCC--eeEEEEccCCCceEEEEEeCCC----cEEEEEcCCc-EEEEeCCCC-eE
Q psy8895         341 -------ESHPVITGSHDCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPTL----YMFASASPDN-IKQWKCPEG-KF  405 (479)
Q Consensus       341 -------~~~~l~sgs~d~~v~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~----~~l~s~s~d~-i~~w~~~~~-~~  405 (479)
                             ....|++|+.|..|+||+...+  +.-.+|.+|.+-|+.+++.|..    ..+|+++.|. +.||....- +.
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                   1145999999999999998875  3445688999999999999963    5889999885 999976521 21


Q ss_pred             --EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         406 --IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       406 --~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                        ...++.-...++.+.+|..| .|+.++.|..+.+|--.
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence              12233456789999999988 88889999999999744

>KOG0646|consensus

Probab=99.89  E-value=1.9e-21  Score=177.52  Aligned_cols=195  Identities=17%  Similarity=0.262  Sum_probs=153.6

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC---------CCceEEEEecCCcCEEEEEEcCCC--CEEEEEECCCcE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA---------TGKLKLSLTGHVGSVRGLTVSPRH--PYLFSCGDDRTV  285 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~---------~~~~~~~~~~h~~~v~~v~~~~~~--~~l~s~~~d~~i  285 (479)
                      +|...|+|+.|+.||.+|+|||+||.|.+|.+.         +-+....|..|.-+|+++...+.|  .+++|+|.|.++
T Consensus       121 aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~  200 (476)
T KOG0646|consen  121 AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI  200 (476)
T ss_pred             hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence            467778999999999999999999999999873         224567889999999999887653  579999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      ++||+..+......   .....+.+++.+|....+.+|+.+|.|.+..........        .+-..+.++. .+..+
T Consensus       201 k~wdlS~g~LLlti---~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~--------~~v~~k~~~~-~~t~~  268 (476)
T KOG0646|consen  201 KLWDLSLGVLLLTI---TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQS--------AGVNQKGRHE-ENTQI  268 (476)
T ss_pred             EEEEeccceeeEEE---ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccc--------cccccccccc-cccee
Confidence            99999877654432   234578899999999999999999999887654322111        1111222222 24566


Q ss_pred             EEEccCCC--ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         366 CTLTNHKK--SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       366 ~~~~~h~~--~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      ..+.+|.+  .|++++++-|+.+|++|+.|+ +++||+.+.++++++..-.++|+-+.+.|
T Consensus       269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~  329 (476)
T KOG0646|consen  269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINP  329 (476)
T ss_pred             eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeec
Confidence            77889988  999999999999999999885 99999999999888876778888887744

>KOG1036|consensus

Probab=99.88  E-value=1.3e-20  Score=163.77  Aligned_cols=224  Identities=18%  Similarity=0.272  Sum_probs=173.3

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ...|.++.|+|.++.|+.+++||++++||.........+. |..++.+++|.++ ..+++|+-||.|+.+|+.+++....
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceee
Confidence            4679999999999999999999999999998886655555 8889999999875 4688999999999999987664432


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------CCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------EESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                         ..+..++.|+.+.+....+++|+-|++|++||.+....              -.+..|+.|..|..|.+||++....
T Consensus        91 ---gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~  167 (323)
T KOG1036|consen   91 ---GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDE  167 (323)
T ss_pred             ---ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccc
Confidence               24667899999999889999999999999999884221              1245789999999999999997543


Q ss_pred             EEEE--ccCCCceEEEEEeCCCcEEEEEcCC-cEEE--EeCCC--CeEEeeecCCcc---------eEEEEEEcCCC-EE
Q psy8895         365 LCTL--TNHKKSVRSVALHPTLYMFASASPD-NIKQ--WKCPE--GKFIQNLPGHNA---------IINSICVNNEG-VL  427 (479)
Q Consensus       365 ~~~~--~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~--w~~~~--~~~~~~~~~h~~---------~v~~l~~~~~~-~l  427 (479)
                      ..+.  ...+..++++++-|.+.-++.++-+ .+-+  .|...  .+....++.|+.         +|++++|+|-. .+
T Consensus       168 ~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tf  247 (323)
T KOG1036|consen  168 PFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTF  247 (323)
T ss_pred             hhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceE
Confidence            2211  1234578999999977666666655 4444  44431  133445666642         69999999875 99


Q ss_pred             EEEeCCCcEEEEecCCCeEE
Q psy8895         428 VSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~  447 (479)
                      |||+.||.|.+||+.+...+
T Consensus       248 aTgGsDG~V~~Wd~~~rKrl  267 (323)
T KOG1036|consen  248 ATGGSDGIVNIWDLFNRKRL  267 (323)
T ss_pred             EecCCCceEEEccCcchhhh
Confidence            99999999999998875443

>KOG0289|consensus

Probab=99.88  E-value=6.2e-21  Score=172.51  Aligned_cols=222  Identities=17%  Similarity=0.344  Sum_probs=188.9

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      ..+.++...|....+.+|+.|..+.++|..+++.+..+.||...|..+.++|+...+++++.|..|++|.......+.. 
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~-  298 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS-  298 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc-
Confidence            4577888888778999999999999999999999999999999999999999999999999999999998765443322 


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------------CCCCCeEEEEeCCCcEEEEECC
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------------TEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------------~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                       ...++.++..+..+|.+.++++++.|++.-..+.....                   .+++.++.+|..|+.++|||+.
T Consensus       299 -~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk  377 (506)
T KOG0289|consen  299 -SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK  377 (506)
T ss_pred             -cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence             24567889999999999999999999998887765432                   1355678999999999999999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADNGTMC  437 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~dg~i~  437 (479)
                      .+..+..|.+|.++|++|+|+.+|++|+++.+|. |++||+..-+..+++.-. ...|.+++|.+.| +|+.++.|=+|.
T Consensus       378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy  457 (506)
T KOG0289|consen  378 SQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVY  457 (506)
T ss_pred             CccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEE
Confidence            9999999999999999999999999999999997 999999887766665432 2368999999998 888888776666


Q ss_pred             EEecCC
Q psy8895         438 FWDWRT  443 (479)
Q Consensus       438 lWd~~~  443 (479)
                      +++-.+
T Consensus       458 ~~~k~~  463 (506)
T KOG0289|consen  458 ICKKKT  463 (506)
T ss_pred             EEeccc
Confidence            666443

>KOG0267|consensus

Probab=99.88  E-value=1.1e-22  Score=194.47  Aligned_cols=207  Identities=26%  Similarity=0.431  Sum_probs=182.1

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      +..|...|.|+.+-..++.+++|+.|..+.+|.+..-..+..+.+|..+|.++.|++....|++|+.+|+|++||++..+
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk  103 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK  103 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh
Confidence            44688889999887788999999999999999998887888899999999999999999999999999999999998766


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                      .....  .++...+.++.|+|-+.+.                         ++|+.|+.+++||++...+.+++++|...
T Consensus       104 ~vrtL--tgh~~~~~sv~f~P~~~~~-------------------------a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen  104 IVRTL--TGHLLNITSVDFHPYGEFF-------------------------ASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhh--hccccCcceeeeccceEEe-------------------------ccccccccceehhhhccCceeeecCCcce
Confidence            44332  3455677888898876553                         56788889999999988899999999999


Q ss_pred             eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      |..+.|+|++.+++++++|. +++||...|++...++.|.+.+.++.|.|.. .+++||.|+++++||++|-+-+.
T Consensus       157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            99999999999999999975 9999999999999999999999999999988 78999999999999998765543

>KOG1063|consensus

Probab=99.88  E-value=1.2e-20  Score=179.99  Aligned_cols=208  Identities=23%  Similarity=0.325  Sum_probs=150.9

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeCCC-----eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSADK-----IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVK  286 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~-----~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~  286 (479)
                      .+.+.||...|+|++.+|+|+++||+++..     .|++|+..+...++.+.+|.-.|+.++||||+++|++.|.|+++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s  597 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS  597 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE
Confidence            345679999999999999999999999754     599999999888889999999999999999999999999999999


Q ss_pred             EEECCCCCcc-cCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         287 CWDLEYNKAP-VQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       287 ~wd~~~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      +|........ .... ...|..-|++..|+|+..++++++.|+++++|...+..            |           +.
T Consensus       598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~------------d-----------~~  654 (764)
T KOG1063|consen  598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR------------D-----------KY  654 (764)
T ss_pred             eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch------------h-----------hh
Confidence            9987432211 1111 23355568888888888877777777777666643321            0           11


Q ss_pred             EE--EEccCCCceEEEEEeCC-----CcEEEEEcCC-cEEEEeCCC-------CeE--Ee---eecCCcceEEEEEEcCC
Q psy8895         365 LC--TLTNHKKSVRSVALHPT-----LYMFASASPD-NIKQWKCPE-------GKF--IQ---NLPGHNAIINSICVNNE  424 (479)
Q Consensus       365 ~~--~~~~h~~~v~~i~~~~~-----~~~l~s~s~d-~i~~w~~~~-------~~~--~~---~~~~h~~~v~~l~~~~~  424 (479)
                      +.  ....+..+|+++++.|-     +.+++.|-.. .|.+|....       +..  ..   ...+|...|+.+++.|-
T Consensus       655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~  734 (764)
T KOG1063|consen  655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT  734 (764)
T ss_pred             hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence            11  22357789999999774     2355555544 599998651       111  11   12356678999998853


Q ss_pred             ---------C--EEEEEeCCCcEEEEecC
Q psy8895         425 ---------G--VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       425 ---------~--~l~sg~~dg~i~lWd~~  442 (479)
                               +  .|++|++|-++|++++.
T Consensus       735 ~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  735 CSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             cccccccccceeEEeeecccceeEEeecc
Confidence                     2  47999999999999864

>KOG0267|consensus

Probab=99.88  E-value=1.2e-22  Score=194.33  Aligned_cols=196  Identities=24%  Similarity=0.445  Sum_probs=170.2

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      +.+|..+|.|+.|+++..+|++|+.+|+|++||+..++...++.+|...+.++.|+|-+.+.++|+.|..+++||++...
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999998666


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                      +...+.  .+...+.++.|.|+|.+++                         +|+.|.++++||+..++....|+.|+..
T Consensus       146 c~~~~~--s~~~vv~~l~lsP~Gr~v~-------------------------~g~ed~tvki~d~~agk~~~ef~~~e~~  198 (825)
T KOG0267|consen  146 CSHTYK--SHTRVVDVLRLSPDGRWVA-------------------------SGGEDNTVKIWDLTAGKLSKEFKSHEGK  198 (825)
T ss_pred             ceeeec--CCcceeEEEeecCCCceee-------------------------ccCCcceeeeeccccccccccccccccc
Confidence            654442  2556688889999887754                         5566788999999999999999999999


Q ss_pred             eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEE
Q psy8895         375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMC  437 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~  437 (479)
                      +.++.|+|...++++++.|. +++||+.+-+.+.........|.++.|++++..+..+..-+++
T Consensus       199 v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~  262 (825)
T KOG0267|consen  199 VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS  262 (825)
T ss_pred             ccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence            99999999999999999886 9999999888888888778899999999999544444433444

>KOG0639|consensus

Probab=99.87  E-value=7.1e-21  Score=174.97  Aligned_cols=191  Identities=24%  Similarity=0.366  Sum_probs=157.7

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      ...+++++||.++.++++.||.|.|||+.+...+..|+||.+.+.|+.+++||..|-|||-|+++|.||++.++.+.+  
T Consensus       511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq--  588 (705)
T KOG0639|consen  511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ--  588 (705)
T ss_pred             hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh--
Confidence            356788999999999999999999999999999999999999999999999999999999999999999987765543  


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                       .+..+.|+++.+.|++..+++|...+.+.+..                         .. +...+.+.-|++.|.++.|
T Consensus       589 -hdF~SQIfSLg~cP~~dWlavGMens~vevlh-------------------------~s-kp~kyqlhlheScVLSlKF  641 (705)
T KOG0639|consen  589 -HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH-------------------------TS-KPEKYQLHLHESCVLSLKF  641 (705)
T ss_pred             -hhhhhhheecccCCCccceeeecccCcEEEEe-------------------------cC-CccceeecccccEEEEEEe
Confidence             24457899999999999988887666554422                         11 2334556679999999999


Q ss_pred             eCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         381 HPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       381 ~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      .+-++.|++.+.|+ +-.|...-|.-+...+. ...|.+..++.|. +++|||.|+.-.+|.+
T Consensus       642 a~cGkwfvStGkDnlLnawrtPyGasiFqskE-~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  642 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccCceeeecCchhhhhhccCccccceeeccc-cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            99999999999887 78999887776665543 3457777787665 9999999999988875

>KOG2106|consensus

Probab=99.87  E-value=3.4e-19  Score=164.16  Aligned_cols=342  Identities=15%  Similarity=0.199  Sum_probs=226.3

Q ss_pred             cCCcc-cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          29 YHGHL-SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        29 ~~gH~-~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      |+++. ..|.|++|.++|+ ++||.++|.|-||+..+.+-.....+|.+.|.++.-..+..      ++           
T Consensus       241 fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt------ll-----------  302 (626)
T KOG2106|consen  241 FEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT------LL-----------  302 (626)
T ss_pred             cccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc------Ee-----------
Confidence            45443 5799999999876 57899999999999988887777779999988886543321      11           


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                                 ++..+..+-.|+.+...... ..+.+.. ..+...                  .+.... +......|.
T Consensus       303 -----------SGgKDRki~~Wd~~y~k~r~-~elPe~~-G~iRtv------------------~e~~~d-i~vGTtrN~  350 (626)
T KOG2106|consen  303 -----------SGGKDRKIILWDDNYRKLRE-TELPEQF-GPIRTV------------------AEGKGD-ILVGTTRNF  350 (626)
T ss_pred             -----------ecCccceEEecccccccccc-ccCchhc-CCeeEE------------------ecCCCc-EEEeeccce
Confidence                       12233445555522110000 0000000 000000                  000011 111111111


Q ss_pred             hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEE
Q psy8895         188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL  267 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v  267 (479)
                      .+.    .        ..+  ....-+..+|.+....++.+|+.+++++++.|+.+++|+  ..+...+.. ...++.|+
T Consensus       351 iL~----G--------t~~--~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~  413 (626)
T KOG2106|consen  351 ILQ----G--------TLE--NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECA  413 (626)
T ss_pred             EEE----e--------eec--CCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEe
Confidence            100    0        000  011224678999999999999999999999999999999  445544433 45688999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------
Q psy8895         268 TVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------  338 (479)
Q Consensus       268 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------  338 (479)
                      .|+|.| .++.|...|...+.|.++.......  .+ +.++.+++|+|+|.++++|+.|+.|.+|......         
T Consensus       414 ~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~--~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~  489 (626)
T KOG2106|consen  414 DFHPSG-VVAVGTATGRWFVLDTETQDLVTIH--TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC  489 (626)
T ss_pred             eccCcc-eEEEeeccceEEEEecccceeEEEE--ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence            999999 8899999999999999874433221  23 6789999999999999999999999999876432         


Q ss_pred             ----------CCCCCeEEEEeCCCcEEEEECCCCee---EEE-----------E----ccCCCceEEEEEeCCCcEEEEE
Q psy8895         339 ----------TEESHPVITGSHDCTIRLWDLAAGKS---LCT-----------L----TNHKKSVRSVALHPTLYMFASA  390 (479)
Q Consensus       339 ----------~~~~~~l~sgs~d~~v~iwd~~~~~~---~~~-----------~----~~h~~~v~~i~~~~~~~~l~s~  390 (479)
                                +.+++.+.+-|-|-.|..|.....+.   ++.           |    ..+...|.+++-+....++|++
T Consensus       490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~g  569 (626)
T KOG2106|consen  490 SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASG  569 (626)
T ss_pred             cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhcc
Confidence                      24567888999999999994332211   111           1    1133456667777778888888


Q ss_pred             cCC-cEEEEeCCCC---eEEeeecCCcceEEEEEEcC-CCEEEEEeCCCcEEEEec
Q psy8895         391 SPD-NIKQWKCPEG---KFIQNLPGHNAIINSICVNN-EGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       391 s~d-~i~~w~~~~~---~~~~~~~~h~~~v~~l~~~~-~~~l~sg~~dg~i~lWd~  441 (479)
                      .+. .++++..+-.   ...+...+|.+.|.+++|.. |..+++.+.|.+|..|++
T Consensus       570 dd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  570 DDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            766 4888876432   23567789999999999974 557777779999999986

>KOG2048|consensus

Probab=99.87  E-value=7e-20  Score=174.44  Aligned_cols=215  Identities=19%  Similarity=0.319  Sum_probs=168.4

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      ..|.+++|. ++..|+|.+.+|.|.-||+.+++.+..+....+.|++++.+|.+..++.|++||.+..+++..+......
T Consensus        70 rsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r  148 (691)
T KOG2048|consen   70 RSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR  148 (691)
T ss_pred             CceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe
Confidence            346778887 5778999999999999999999999999988999999999999999999999998888888766554433


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE-------EEcc-C
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC-------TLTN-H  371 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~-------~~~~-h  371 (479)
                      ......+++.++.|++++..++.|+.||.                         |++||+.++..++       .+.. .
T Consensus       149 ~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~-------------------------Iriwd~~~~~t~~~~~~~~d~l~k~~  203 (691)
T KOG2048|consen  149 SLMRQKSRVLSLSWNPTGTKIAGGSIDGV-------------------------IRIWDVKSGQTLHIITMQLDRLSKRE  203 (691)
T ss_pred             ecccccceEEEEEecCCccEEEecccCce-------------------------EEEEEcCCCceEEEeeecccccccCC
Confidence            33345688999999999887766555554                         5555555544443       1111 2


Q ss_pred             CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE----
Q psy8895         372 KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN----  446 (479)
Q Consensus       372 ~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~----  446 (479)
                      .--|+++.|-.++.+..+-|.+.|++||...+++++....|.+.|.+++.++++ ++++++.|+.|.-+...++..    
T Consensus       204 ~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~  283 (691)
T KOG2048|consen  204 PTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI  283 (691)
T ss_pred             ceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence            335789999988888777788889999999999999999999999999999886 999999999999888777622    


Q ss_pred             -----EEEEEEeEecCCCC
Q psy8895         447 -----FQRLQVRCVSGFPK  460 (479)
Q Consensus       447 -----~~~~~~~~~~~~~~  460 (479)
                           ...-.+|++..+++
T Consensus       284 ~~~r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  284 NSRRDLHAHDVRSMAVIEN  302 (691)
T ss_pred             eccccCCcccceeeeeecc
Confidence                 11235566666665

>KOG1332|consensus

Probab=99.87  E-value=2e-20  Score=157.31  Aligned_cols=187  Identities=22%  Similarity=0.311  Sum_probs=140.2

Q ss_pred             EecCCCccEEEEEEc-C-CCcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEE
Q psy8895         214 VISGHLGWVRCVAVE-P-GNEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKC  287 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~-~-~g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~  287 (479)
                      .|.||.++|..++|. | -|.+|||++.||.|.||.-.+|+.  ...+..|..+|++++|.|.  |..|++++.||.|.+
T Consensus        51 ~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsv  130 (299)
T KOG1332|consen   51 ELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSV  130 (299)
T ss_pred             EecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEE
Confidence            356788888888874 3 689999999999999999888744  4467789999999999886  567889999999999


Q ss_pred             EECCCC-CcccCCCCCCCCCCeEEEEEeCC---C-----------CEEEEEeCCCeEEEEeCCCCC------C-------
Q psy8895         288 WDLEYN-KAPVQPGSMDSESGIFSMTFDNS---G-----------SRLITTEADKTVKLYKEDDSA------T-------  339 (479)
Q Consensus       288 wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~~~~~~~~~------~-------  339 (479)
                      .+.+.. .-....-...++-++.++.|.|.   |           +.+++|+.|..+++|+.++..      .       
T Consensus       131 l~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwV  210 (299)
T KOG1332|consen  131 LTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWV  210 (299)
T ss_pred             EEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhh
Confidence            988754 21111111235567888888775   3           569999999999999987631      0       


Q ss_pred             ----------CCCCeEEEEeCCCcEEEEECCCC-ee--EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeC
Q psy8895         340 ----------EESHPVITGSHDCTIRLWDLAAG-KS--LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKC  400 (479)
Q Consensus       340 ----------~~~~~l~sgs~d~~v~iwd~~~~-~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~  400 (479)
                                .....++++|+||+|.||..+.. ++  ..-++.....+..+.||..+.+|+.+..| ++.+|.-
T Consensus       211 RDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke  285 (299)
T KOG1332|consen  211 RDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE  285 (299)
T ss_pred             hhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence                      01235899999999999987632 11  11233346789999999999999877766 4999964

>KOG2055|consensus

Probab=99.86  E-value=5.3e-20  Score=167.83  Aligned_cols=201  Identities=18%  Similarity=0.253  Sum_probs=156.1

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .+....+++++++|+..+..|.|.+--..++..+.+++ ..+.|..++|+.|++.|+.++.+|.|.+||++...+.....
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            34556778999999999999999999999998887776 45789999999999999999999999999998765443321


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                      . +..-.-..++.++++.++++|+..|.+.+|+.......                   .+.+++.++..-...|+++.|
T Consensus       384 D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s-------------------~~PkPik~~dNLtt~Itsl~F  443 (514)
T KOG2055|consen  384 D-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAS-------------------TNPKPIKTVDNLTTAITSLQF  443 (514)
T ss_pred             e-cCccceeeeeecCCCceEEeccCcceEEEeccchhhcc-------------------CCCCchhhhhhhheeeeeeee
Confidence            1 11112345566677788888888887777775443211                   124677777777889999999


Q ss_pred             eCCCcEEEEEcCC---cEEEEeCCCCeEEeeecCC---cceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         381 HPTLYMFASASPD---NIKQWKCPEGKFIQNLPGH---NAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       381 ~~~~~~l~s~s~d---~i~~w~~~~~~~~~~~~~h---~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +|+.++||-+|..   .+++-.+++......++..   -+.|+|++|+|++ ++|.|-++|++.+|.++
T Consensus       444 n~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  444 NHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9999999988854   4888888777776666543   3568999999966 99999999999999864

>KOG4283|consensus

Probab=99.86  E-value=1.7e-19  Score=155.59  Aligned_cols=190  Identities=18%  Similarity=0.329  Sum_probs=130.5

Q ss_pred             cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEECCCC-Cc------------cc
Q psy8895         232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-LFSCGDDRTVKCWDLEYN-KA------------PV  297 (479)
Q Consensus       232 ~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~~-~~------------~~  297 (479)
                      -++|+|..|-.|++-|+.+|.+..++.||.+.|.++.|+|...+ |++||.||.|++||++.. .+            +.
T Consensus       159 cLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  159 CLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             eEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcc
Confidence            47888999999999999999999999999999999999998886 458999999999999743 11            11


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ......+.+.+..++|..++.++++.+-|..+++|+.....+....                 .++....-+.|. .+. 
T Consensus       239 ~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~-----------------~g~~~~n~~~~~-~~~-  299 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLRE-----------------FGPIIHNQTTSF-AVH-  299 (397)
T ss_pred             ccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccc-----------------cccccccccccc-eEE-
Confidence            1112345567778888888777776666666666654433221100                 000000000010 011 


Q ss_pred             EEEeCCCcEEEEE-cCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         378 VALHPTLYMFASA-SPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       378 i~~~~~~~~l~s~-s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +. +-+...|+.- .++.+.+.++-+++.+..+.+|...+.|-++.|+= ...+|+.|+.|..|-.
T Consensus       300 ~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  300 IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            11 1122222222 22568888999999999999998889998888887 7899999999999975

>KOG0973|consensus

Probab=99.86  E-value=4.2e-20  Score=185.07  Aligned_cols=208  Identities=21%  Similarity=0.317  Sum_probs=165.4

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC------------------CceEEEEecCCcCEEEEEEcCCCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT------------------GKLKLSLTGHVGSVRGLTVSPRHP  274 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~------------------~~~~~~~~~h~~~v~~v~~~~~~~  274 (479)
                      .+...|.+.|.|+.|+|||++||+||.|+.|.||+...                  .++...+.+|.+.|.+++|+|++.
T Consensus        63 ~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   63 CTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             eeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc
Confidence            45668999999999999999999999999999998762                  125678899999999999999999


Q ss_pred             EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcE
Q psy8895         275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI  354 (479)
Q Consensus       275 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v  354 (479)
                      +++++|.|++|.+|+..+.+....  ..++.+.|--+.|+|-|+++++-+.|+++++|+                     
T Consensus       143 ~lvS~s~DnsViiwn~~tF~~~~v--l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr---------------------  199 (942)
T KOG0973|consen  143 LLVSVSLDNSVIIWNAKTFELLKV--LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR---------------------  199 (942)
T ss_pred             EEEEecccceEEEEccccceeeee--eecccccccceEECCccCeeeeecCCceEEEEE---------------------
Confidence            999999999999999887643322  235667788899999999988777666666665                     


Q ss_pred             EEEECCCCeeEEEEccC------CCceEEEEEeCCCcEEEEEcC--C---cEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         355 RLWDLAAGKSLCTLTNH------KKSVRSVALHPTLYMFASASP--D---NIKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h------~~~v~~i~~~~~~~~l~s~s~--d---~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                          +......+++.++      ...++.+.|||||++|++...  +   .+.+.+..+-+.-..+-||.+++.++.|+|
T Consensus       200 ----t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP  275 (942)
T KOG0973|consen  200 ----TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNP  275 (942)
T ss_pred             ----cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeCh
Confidence                3333333343333      235788999999999988642  2   378888888888899999999999999976


Q ss_pred             C------C------------EEEEEeCCCcEEEEecCCCeEE
Q psy8895         424 E------G------------VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       424 ~------~------------~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .      .            .+|+||.|++|.||......++
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl  317 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL  317 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence            1      1            5899999999999997665544

>KOG1274|consensus

Probab=99.85  E-value=7.7e-19  Score=172.82  Aligned_cols=223  Identities=17%  Similarity=0.258  Sum_probs=164.4

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ...|.+++.  ++.+|++|+.+++|.+|...++..-..+...+-++++++|+.+|.+++.||+|-.|++-+.........
T Consensus        56 g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~  133 (933)
T KOG1274|consen   56 GELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKV  133 (933)
T ss_pred             CceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchhee
Confidence            344555554  355999999999999999998877555666678999999999999999999999999998865433222


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--------
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--------  370 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--------  370 (479)
                        ..++.+++.++.|+|.+..|++.+-||.+++|+.                         ..+....++.+        
T Consensus       134 --lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~-------------------------~~~~~~~tl~~v~k~n~~~  186 (933)
T KOG1274|consen  134 --LRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL-------------------------QDGILSKTLTGVDKDNEFI  186 (933)
T ss_pred             --ecccCCceeeeeEcCCCCEEEEEecCceEEEEEc-------------------------ccchhhhhcccCCcccccc
Confidence              2467889999999999998877666665555554                         44433333322        


Q ss_pred             CCCceEEEEEeCC-CcEEEEEcCCcEEEEeCCCCeEEeeecC--CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE
Q psy8895         371 HKKSVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPG--HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       371 h~~~v~~i~~~~~-~~~l~s~s~d~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      ....+..++|+|+ +++++.+.++.|++++....+....+..  +...+.++.|+|.| +||+++.||.|.|||+++-+.
T Consensus       187 ~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~  266 (933)
T KOG1274|consen  187 LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER  266 (933)
T ss_pred             ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence            1345678899998 5666667777899999999988877654  45558999999999 999999999999999997332


Q ss_pred             EE-EEEEeEecCCCCCceEEeeehh
Q psy8895         447 FQ-RLQVRCVSGFPKPSVFFFFLAF  470 (479)
Q Consensus       447 ~~-~~~~~~~~~~~~~~~~~~~~~~  470 (479)
                      -. ...+-|+.+-|+-.+..+-.+.
T Consensus       267 ~~~~~~Vc~~aw~p~~n~it~~~~~  291 (933)
T KOG1274|consen  267 HEFKRAVCCEAWKPNANAITLITAL  291 (933)
T ss_pred             ccccceeEEEecCCCCCeeEEEeec
Confidence            11 1133466777776666554443

>KOG0305|consensus

Probab=99.85  E-value=2.3e-19  Score=171.00  Aligned_cols=242  Identities=23%  Similarity=0.367  Sum_probs=186.4

Q ss_pred             ccceEEEEEccCCceEEEecCCCeEEEEeecc-cceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccC
Q psy8895          33 LSSVNTISLHPTIDVLITAGRDSTARVWDVRT-KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAG  111 (479)
Q Consensus        33 ~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (479)
                      ...|+++.++|+|.+||.|-.+|+|.|||+++ .+.-.....|...|.++++....                 +.     
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~-----------------ls-----  274 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSV-----------------LS-----  274 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCce-----------------EE-----
Confidence            78999999999999999999999999999753 23223222388888888875321                 11     


Q ss_pred             ceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHH
Q psy8895         112 FLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ  191 (479)
Q Consensus       112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  191 (479)
                             ++..++.|..+++...+                                                    ..  
T Consensus       275 -------sGsr~~~I~~~dvR~~~----------------------------------------------------~~--  293 (484)
T KOG0305|consen  275 -------SGSRDGKILNHDVRISQ----------------------------------------------------HV--  293 (484)
T ss_pred             -------EecCCCcEEEEEEecch----------------------------------------------------hh--
Confidence                   11122233222221100                                                    00  


Q ss_pred             HHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC
Q psy8895         192 QAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP  271 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~  271 (479)
                                          ..++.+|...|..+.|++|+.++|+|+.|+.+.|||......+..+..|...|..++|+|
T Consensus       294 --------------------~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP  353 (484)
T KOG0305|consen  294 --------------------VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCP  353 (484)
T ss_pred             --------------------hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCC
Confidence                                002457999999999999999999999999999999988888899999999999999999


Q ss_pred             CC-CEEEEE--ECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEE
Q psy8895         272 RH-PYLFSC--GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG  348 (479)
Q Consensus       272 ~~-~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sg  348 (479)
                      -. ..||+|  +.|+.|++||..++.....   ....+.|..+.|++..+.++++                       -|
T Consensus       354 ~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~---vdtgsQVcsL~Wsk~~kEi~st-----------------------hG  407 (484)
T KOG0305|consen  354 WQSGLLATGGGSADRCIKFWNTNTGARIDS---VDTGSQVCSLIWSKKYKELLST-----------------------HG  407 (484)
T ss_pred             CccCceEEcCCCcccEEEEEEcCCCcEecc---cccCCceeeEEEcCCCCEEEEe-----------------------cC
Confidence            54 467775  5799999999987765543   3566789999999987766543                       34


Q ss_pred             eCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCC
Q psy8895         349 SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEG  403 (479)
Q Consensus       349 s~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~  403 (479)
                      ..+..|.||+..+.+.+..+.+|...|..++++||+..+++++.| ++++|++-..
T Consensus       408 ~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  408 YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            456689999999999999999999999999999999999888877 5999998553

>KOG0270|consensus

Probab=99.85  E-value=3.8e-20  Score=168.07  Aligned_cols=207  Identities=23%  Similarity=0.334  Sum_probs=158.5

Q ss_pred             ecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEECCC
Q psy8895         215 ISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~  292 (479)
                      -.+|+..|.+++++.. .+.|||||.|.+|++||+.+|++..++..|.+.|.++.|+|. ..+|++|+.|+++.+.|.+.
T Consensus       239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            3579999999999864 468999999999999999999999999999999999999996 45788999999999999974


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEccC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTNH  371 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~h  371 (479)
                      ....  ...+...+.|..++|++...                        ..++++..||+|+-+|++.. +++.+++.|
T Consensus       319 ~~~s--~~~wk~~g~VEkv~w~~~se------------------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AH  372 (463)
T KOG0270|consen  319 PSNS--GKEWKFDGEVEKVAWDPHSE------------------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAH  372 (463)
T ss_pred             cccc--CceEEeccceEEEEecCCCc------------------------eeEEEecCCceEEeeecCCCCCceeEEEec
Confidence            2211  11123345677777776433                        23566778888888898874 899999999


Q ss_pred             CCceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeE--EeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCe
Q psy8895         372 KKSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKF--IQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       372 ~~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~  445 (479)
                      .+.|.+|++++.. .++++++.++ +++|++.....  ++...-.-+...|.++.|+-  +++.|+..+.+++||+.++.
T Consensus       373 d~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  373 DDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence            9999999999864 5677777775 99999854322  22211112335555666654  89999999999999998876


Q ss_pred             EE
Q psy8895         446 NF  447 (479)
Q Consensus       446 ~~  447 (479)
                      ++
T Consensus       453 ~V  454 (463)
T KOG0270|consen  453 PV  454 (463)
T ss_pred             hH
Confidence            54

>KOG4283|consensus

Probab=99.84  E-value=6.3e-20  Score=158.27  Aligned_cols=208  Identities=23%  Similarity=0.393  Sum_probs=161.3

Q ss_pred             ecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCce----------EE-----EEecCCcCEEEEEEcC-CCCEEE
Q psy8895         215 ISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKL----------KL-----SLTGHVGSVRGLTVSP-RHPYLF  277 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~----------~~-----~~~~h~~~v~~v~~~~-~~~~l~  277 (479)
                      .+.|.+.|.++.+.+ .|+++++|+.||.|.+||+++..-          +.     .-.+|.-.|.++.|-| |..++.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt  118 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT  118 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence            456999999999987 789999999999999999975430          11     1135777899999887 555788


Q ss_pred             EEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEE
Q psy8895         278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLW  357 (479)
Q Consensus       278 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iw  357 (479)
                      ++|.|+++++||..+.+.....   ..++.|++-+++|-..                      ...++++|..|-.|++=
T Consensus       119 ssSFDhtlKVWDtnTlQ~a~~F---~me~~VYshamSp~a~----------------------sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen  119 SSSFDHTLKVWDTNTLQEAVDF---KMEGKVYSHAMSPMAM----------------------SHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             cccccceEEEeecccceeeEEe---ecCceeehhhcChhhh----------------------cceEEEEecCCCcEEEE
Confidence            8999999999999876543322   2345566666665321                      11246777788889999


Q ss_pred             ECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCC-eE--------------EeeecCCcceEEEEE
Q psy8895         358 DLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPDN-IKQWKCPEG-KF--------------IQNLPGHNAIINSIC  420 (479)
Q Consensus       358 d~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~-~~--------------~~~~~~h~~~v~~l~  420 (479)
                      |+..|..-+++.+|++.|.++.|+|.. ..|++++.|. +++||+... .+              +++-..|.+.|+.+|
T Consensus       174 Di~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla  253 (397)
T KOG4283|consen  174 DIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLA  253 (397)
T ss_pred             eccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeee
Confidence            999999999999999999999999975 5778888775 999998643 11              122346788899999


Q ss_pred             EcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         421 VNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      ++.++ ++++.+.|.++++|+..+|+..
T Consensus       254 ~tSd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  254 WTSDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ecccchhhhhccCccceEEeecccCccc
Confidence            99999 8999999999999999988643

>KOG0294|consensus

Probab=99.84  E-value=1.8e-19  Score=157.00  Aligned_cols=208  Identities=20%  Similarity=0.307  Sum_probs=163.1

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC--EEEEEECCCcEEEEE
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP--YLFSCGDDRTVKCWD  289 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~--~l~s~~~d~~i~~wd  289 (479)
                      ...+..|.+.+++++.+  +.++||||.|.+|+|||+++......+-.|.+.|+++.|.+...  .|++|++||.|.+|+
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~  113 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR  113 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence            34567899999999985  89999999999999999999988888889999999999998765  899999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      ...-......  ..+.++|..++.+|.++..++-+                         .|+.++.||+-.++.-..+.
T Consensus       114 ~~~W~~~~sl--K~H~~~Vt~lsiHPS~KLALsVg-------------------------~D~~lr~WNLV~Gr~a~v~~  166 (362)
T KOG0294|consen  114 VGSWELLKSL--KAHKGQVTDLSIHPSGKLALSVG-------------------------GDQVLRTWNLVRGRVAFVLN  166 (362)
T ss_pred             cCCeEEeeee--cccccccceeEecCCCceEEEEc-------------------------CCceeeeehhhcCccceeec
Confidence            8654333222  34566799999999988765544                         45556666666555433332


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                       -...-+.+.|+|.+..|+....+.|.+|...+..+...+... ..+.|+.|...+.|++|++|+.|++||-.++.++..
T Consensus       167 -L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  167 -LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             -cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCcccee
Confidence             112234499999999999999999999999887766555443 456677777788999999999999999887766655


Q ss_pred             E
Q psy8895         450 L  450 (479)
Q Consensus       450 ~  450 (479)
                      +
T Consensus       245 ~  245 (362)
T KOG0294|consen  245 F  245 (362)
T ss_pred             e
Confidence            4

>KOG2096|consensus

Probab=99.84  E-value=1.4e-19  Score=157.68  Aligned_cols=189  Identities=21%  Similarity=0.351  Sum_probs=147.5

Q ss_pred             EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC-----cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-Ce
Q psy8895         255 LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-----APVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KT  328 (479)
Q Consensus       255 ~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~  328 (479)
                      ..+++|.+.|++++|+.||+.|+|++.|++|++|+++.-.     +....  . +......+.|.|+.+.+++.... .+
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--v-e~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--V-EYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--c-cCCCceEEEECCCcceEEEEEccCCE
Confidence            3578999999999999999999999999999999986421     11111  1 12346689999998877666554 46


Q ss_pred             EEEEeCCCCCC-----------------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE
Q psy8895         329 VKLYKEDDSAT-----------------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA  379 (479)
Q Consensus       329 i~~~~~~~~~~-----------------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~  379 (479)
                      +.+|.+.....                             .....+++++.|.+|.+|+++ |+.+.++......-+..+
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa  235 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA  235 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee
Confidence            88887643211                             123468999999999999999 888888776666677889


Q ss_pred             EeCCCcEEEEEcCC-cEEEEeC---CCC-----eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         380 LHPTLYMFASASPD-NIKQWKC---PEG-----KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       380 ~~~~~~~l~s~s~d-~i~~w~~---~~~-----~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .||+|+.+++++-- .+++|..   ..|     ..+..|+||+..|..+||+++. .++|.|.||++||||.+-.|..
T Consensus       236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~  313 (420)
T KOG2096|consen  236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA  313 (420)
T ss_pred             eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence            99999999888765 4999975   233     3456789999999999999999 8999999999999997755443

>KOG0772|consensus

Probab=99.84  E-value=1e-19  Score=168.05  Aligned_cols=213  Identities=21%  Similarity=0.263  Sum_probs=153.9

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      -.+.+|+..|.++++.|.|-.|+|||.|.+|++||+.....    -..+ ......|+++.|++.+.+++..+.....++
T Consensus       161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl  240 (641)
T KOG0772|consen  161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKL  240 (641)
T ss_pred             EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeE
Confidence            35778999999999999999999999999999999864421    1111 122347999999999999998888889999


Q ss_pred             EECCCCCccc----------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEE
Q psy8895         288 WDLEYNKAPV----------QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLW  357 (479)
Q Consensus       288 wd~~~~~~~~----------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iw  357 (479)
                      +|-.......          .....+|...+.|..|+|..+                        ..++|++.||++|||
T Consensus       241 ~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k------------------------~~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  241 LDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK------------------------EEFLTCSYDGTLRIW  296 (641)
T ss_pred             EccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc------------------------cceEEecCCCcEEEE
Confidence            9854222110          011123334455555655432                        346788889999999


Q ss_pred             ECCCCee-EEEEc-----cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE---EeeecCCcc--eEEEEEEcCCC
Q psy8895         358 DLAAGKS-LCTLT-----NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF---IQNLPGHNA--IINSICVNNEG  425 (479)
Q Consensus       358 d~~~~~~-~~~~~-----~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~---~~~~~~h~~--~v~~l~~~~~~  425 (479)
                      |++.-+. +..++     +.+-++++++|+|++.++|++..|+ |.+|+..+...   .+.-+.|..  .|+|+.||+||
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg  376 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG  376 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence            9876432 22222     2334789999999999999988775 99999744321   334457766  89999999999


Q ss_pred             -EEEEEeCCCcEEEEecCC-CeEEEE
Q psy8895         426 -VLVSGADNGTMCFWDWRT-GYNFQR  449 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~-~~~~~~  449 (479)
                       +|+|=|.|+++++||++. .+++..
T Consensus       377 ~~LlSRg~D~tLKvWDLrq~kkpL~~  402 (641)
T KOG0772|consen  377 NYLLSRGFDDTLKVWDLRQFKKPLNV  402 (641)
T ss_pred             chhhhccCCCceeeeeccccccchhh
Confidence             999999999999999984 355543

>KOG0264|consensus

Probab=99.84  E-value=8.8e-20  Score=166.38  Aligned_cols=203  Identities=22%  Similarity=0.329  Sum_probs=160.1

Q ss_pred             CCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCc----------eEEEEecCCcCEEEEEEcCCCC-EEEEEECCCc
Q psy8895         217 GHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGK----------LKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRT  284 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~----------~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~  284 (479)
                      -|.+.|..++..|+. ..+++++..+.+.|||..+..          .-..+.+|...-.+++|++... .+++++.|++
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~  201 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT  201 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence            599999999999865 566778888999999986431          1237889998778899988643 6889999999


Q ss_pred             EEEEECCCCCcc-----cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEEC
Q psy8895         285 VKCWDLEYNKAP-----VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       285 i~~wd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~  359 (479)
                      |++||+......     .......+...+..++|++...                        ..+.+.+.|+.+.|||+
T Consensus       202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~------------------------~lF~sv~dd~~L~iwD~  257 (422)
T KOG0264|consen  202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE------------------------DLFGSVGDDGKLMIWDT  257 (422)
T ss_pred             EEEEeccccccCCccccceEEeecCCcceehhhccccch------------------------hhheeecCCCeEEEEEc
Confidence            999999643221     0111223455566666665433                        34677888999999999


Q ss_pred             C--CCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCC-eEEeeecCCcceEEEEEEcCCC--EEEEEeC
Q psy8895         360 A--AGKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEG-KFIQNLPGHNAIINSICVNNEG--VLVSGAD  432 (479)
Q Consensus       360 ~--~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~  432 (479)
                      +  +.++....++|...|.+++|+| +..+||+++.| .+.+||+.+- +.++++.+|...|.++-++|+.  .|||++.
T Consensus       258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~  337 (422)
T KOG0264|consen  258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT  337 (422)
T ss_pred             CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc
Confidence            9  5667777889999999999999 57899999977 5999999765 5688999999999999999976  8999999


Q ss_pred             CCcEEEEecCC
Q psy8895         433 NGTMCFWDWRT  443 (479)
Q Consensus       433 dg~i~lWd~~~  443 (479)
                      |+++.+||+..
T Consensus       338 D~rl~vWDls~  348 (422)
T KOG0264|consen  338 DRRLNVWDLSR  348 (422)
T ss_pred             CCcEEEEeccc
Confidence            99999999873

>KOG0302|consensus

Probab=99.83  E-value=4.9e-19  Score=157.67  Aligned_cols=201  Identities=26%  Similarity=0.430  Sum_probs=142.2

Q ss_pred             EEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceE---EEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEE
Q psy8895         213 RVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLK---LSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKC  287 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~---~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~  287 (479)
                      .++.+|.+.-+.+.|+| ....|+||.--+.|.+|...+|...   ..+.+|+.+|..++|||.. .++++||.|++|+|
T Consensus       205 ~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI  284 (440)
T KOG0302|consen  205 FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI  284 (440)
T ss_pred             EEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence            45678888889999998 3345888888889999999988653   3577899999999999964 47889999999999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC---Cee
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA---GKS  364 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~---~~~  364 (479)
                      ||++..+.........+++.|..+.|+....                         +|++|+.||+++|||++.   +++
T Consensus       285 WDiRs~~~~~~~~~kAh~sDVNVISWnr~~~-------------------------lLasG~DdGt~~iwDLR~~~~~~p  339 (440)
T KOG0302|consen  285 WDIRSGPKKAAVSTKAHNSDVNVISWNRREP-------------------------LLASGGDDGTLSIWDLRQFKSGQP  339 (440)
T ss_pred             EEecCCCccceeEeeccCCceeeEEccCCcc-------------------------eeeecCCCceEEEEEhhhccCCCc
Confidence            9998764322221223444555555543322                         467888888888888875   578


Q ss_pred             EEEEccCCCceEEEEEeCC--CcEEEEEcCCcEEEEeCCCCe-----------EE-----eeecCCc--ceEEEEEEcCC
Q psy8895         365 LCTLTNHKKSVRSVALHPT--LYMFASASPDNIKQWKCPEGK-----------FI-----QNLPGHN--AIINSICVNNE  424 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d~i~~w~~~~~~-----------~~-----~~~~~h~--~~v~~l~~~~~  424 (479)
                      +.+++.|..+|++|.|+|.  ..+.+++.++.|.+||+..-.           -+     +-|.-|.  ..+..+.+.+.
T Consensus       340 VA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q  419 (440)
T KOG0302|consen  340 VATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ  419 (440)
T ss_pred             ceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC
Confidence            9999999999999999994  344455555569999974211           01     1122232  23455566543


Q ss_pred             --CEEEEEeCCCcEEE
Q psy8895         425 --GVLVSGADNGTMCF  438 (479)
Q Consensus       425 --~~l~sg~~dg~i~l  438 (479)
                        |+|++.+.||--.+
T Consensus       420 iPG~lvsTa~dGfnVf  435 (440)
T KOG0302|consen  420 IPGLLVSTAIDGFNVF  435 (440)
T ss_pred             CCCeEEEecccceeEE
Confidence              58999988886544

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.83  E-value=2e-17  Score=156.01  Aligned_cols=194  Identities=14%  Similarity=0.151  Sum_probs=138.0

Q ss_pred             EEEEcCCCcEEEE-EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC-cEEEEECCCCCcccCCCC
Q psy8895         224 CVAVEPGNEWFAT-GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR-TVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       224 ~~~~~~~g~~l~s-gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~  301 (479)
                      .++++|+++.++. ++.|+.+++||+.+++.+..+..+ ..+.+++++|++.++++++.++ .+..||.++.......  
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~--  153 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV--  153 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE--
Confidence            3567788886654 456899999999998777666532 3467899999999999887765 5677898765432211  


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCC------------------------CCCCe-EEEEeCCCcEE
Q psy8895         302 MDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSAT------------------------EESHP-VITGSHDCTIR  355 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~------------------------~~~~~-l~sgs~d~~v~  355 (479)
                       ........+.|+++++.++.+ ..++.+.+|+......                        ++... +++...++++.
T Consensus       154 -~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       154 -LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             -EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence             112335678999999988654 4689999999764311                        11223 33445567899


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc--CCcEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS--PDNIKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      +||+++++.+..+. +...+.+++|+|++..+++++  ++.|++||..+++.+..++.. ...+.++++|
T Consensus       233 v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~  300 (300)
T TIGR03866       233 VVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP  300 (300)
T ss_pred             EEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence            99999888776653 345789999999999887754  346999999999998888754 3447777654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0644|consensus

Probab=99.82  E-value=4.6e-20  Score=179.14  Aligned_cols=271  Identities=27%  Similarity=0.423  Sum_probs=202.2

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      ++.+.||.+.|+|..|+..|.+++|||.|..||||..++++++.++.||+                              
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs------------------------------  232 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS------------------------------  232 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc------------------------------
Confidence            44568999999999999999999999999999999998887766555553                              


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                                                                                      
T Consensus       233 --------------------------------------------------------------------------------  232 (1113)
T KOG0644|consen  233 --------------------------------------------------------------------------------  232 (1113)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR  265 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~  265 (479)
                                                        +.++.++.+.+.-+++++|.|..|++|.+..+..+..+.+|++.|+
T Consensus       233 ----------------------------------~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavt  278 (1113)
T KOG0644|consen  233 ----------------------------------GDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVT  278 (1113)
T ss_pred             ----------------------------------cccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhcccccee
Confidence                                              3334444444566788999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC---
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE---  340 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~---  340 (479)
                      +++|+|..    +.+.||++++||.+-......  .........+.++.|-..+..+.+++.|+.-..|......-.   
T Consensus       279 aiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~  354 (1113)
T KOG0644|consen  279 AIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNL  354 (1113)
T ss_pred             eeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccc
Confidence            99999964    778999999999872221111  111122345666777788889999999998877765432211   


Q ss_pred             ---------CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeEEee-
Q psy8895         341 ---------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKFIQN-  408 (479)
Q Consensus       341 ---------~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~~~~-  408 (479)
                               .+...+++-.+..+++|++.++..++.+.+|...+..+.++|-.. +..+++.| ...+||+-.|..++. 
T Consensus       355 lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y  434 (1113)
T KOG0644|consen  355 LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY  434 (1113)
T ss_pred             eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee
Confidence                     113344555677889999999999999999999999999999654 33444444 699999988876544 


Q ss_pred             ecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         409 LPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       409 ~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ..+|...+ .-.||+|| .++...+-|.+.|...-.+.
T Consensus       435 ~~gh~kl~-d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  435 FIGHGKLV-DGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ecccceee-ccccCCCCceEecCCCCCceEEeccCCCc
Confidence            35555444 44899998 56655566778776654443

>KOG1445|consensus

Probab=99.82  E-value=8.2e-19  Score=165.73  Aligned_cols=101  Identities=28%  Similarity=0.442  Sum_probs=89.7

Q ss_pred             EEEEeCCCcEEEEECCCC-------eeEEEEccCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcce
Q psy8895         345 VITGSHDCTIRLWDLAAG-------KSLCTLTNHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAI  415 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~-------~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~  415 (479)
                      |+.+..||.|++|.+.++       .+...++.|...|+++-|+|- ...|++++.| .|++||+.+++....+.+|.+.
T Consensus       643 LAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdq  722 (1012)
T KOG1445|consen  643 LAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQ  722 (1012)
T ss_pred             eeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCc
Confidence            578999999999998764       345667889999999999994 5778888888 5999999999999999999999


Q ss_pred             EEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         416 INSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       416 v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      |..++++|+| .+|+...||+|++|+-++++
T Consensus       723 If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e  753 (1012)
T KOG1445|consen  723 IFGIAWSPDGRRIATVCKDGTLRVYEPRSRE  753 (1012)
T ss_pred             eeEEEECCCCcceeeeecCceEEEeCCCCCC
Confidence            9999999999 89999999999999988664

>KOG0321|consensus

Probab=99.81  E-value=2.1e-18  Score=163.25  Aligned_cols=229  Identities=21%  Similarity=0.312  Sum_probs=171.2

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE--EecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS--LTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~--~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~  291 (479)
                      ...|...|..+.+-|....|++++.|.++++||++..++...  +.||...|.+++|.|+.+ .+++|+.||.+.|||++
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            456999999999999777899999999999999999988766  899999999999999765 66789999999999986


Q ss_pred             CCCc--c----------cCC-------------CCCCCCCCeEE---EEEeCCCCEEEEEeC-CCeEEEEeCCCCCCC--
Q psy8895         292 YNKA--P----------VQP-------------GSMDSESGIFS---MTFDNSGSRLITTEA-DKTVKLYKEDDSATE--  340 (479)
Q Consensus       292 ~~~~--~----------~~~-------------~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~--  340 (479)
                      ....  .          ...             ....+...|..   +.+..|...+++++. |+.|++||++.....  
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            3320  0          000             00111223444   556677788888877 999999998754221  


Q ss_pred             ------------------------C--CC-eEEEEeCCCcEEEEECCCC--eeEEEEccCCCc-e-EEEEEeCCCcEEEE
Q psy8895         341 ------------------------E--SH-PVITGSHDCTIRLWDLAAG--KSLCTLTNHKKS-V-RSVALHPTLYMFAS  389 (479)
Q Consensus       341 ------------------------~--~~-~l~sgs~d~~v~iwd~~~~--~~~~~~~~h~~~-v-~~i~~~~~~~~l~s  389 (479)
                                              +  +. +++++. |++|+.||+...  .++..+.++... + ..-..+|++..+++
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S  334 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS  334 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEec
Confidence                                    1  12 344554 999999999863  345555554321 1 12246899999999


Q ss_pred             EcCCc-EEEEeCCCCeE-EeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCC
Q psy8895         390 ASPDN-IKQWKCPEGKF-IQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       390 ~s~d~-i~~w~~~~~~~-~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~  444 (479)
                      ++.|. ..+|.+.+.+. .-.+.||.-.|+++++.|..  -++++++|-++++|++..+
T Consensus       335 gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  335 GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            98885 99999987654 44578999999999987654  6889999999999999765

>KOG1273|consensus

Probab=99.81  E-value=7.7e-18  Score=146.81  Aligned_cols=227  Identities=18%  Similarity=0.245  Sum_probs=158.6

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-LFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~~  293 (479)
                      +.+|..+|.|++|+++|+.|+++|.|..|++||+..|.+.+.+. ...+|+.+.|+|.... .+.+-.+..-.+-++...
T Consensus        61 lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~  139 (405)
T KOG1273|consen   61 LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP  139 (405)
T ss_pred             hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCC
Confidence            45688999999999999999999999999999999999888776 6679999999996543 333333433444444322


Q ss_pred             CcccCC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCc
Q psy8895         294 KAPVQP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------EESHPVITGSHDCT  353 (479)
Q Consensus       294 ~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~  353 (479)
                      ......  ...+.+..-.+..|++.|+++++|...|.+.+++....+.                  ..+..++.-+.|+.
T Consensus       140 ~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRv  219 (405)
T KOG1273|consen  140 KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRV  219 (405)
T ss_pred             ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCce
Confidence            221111  1111122233456889999999999999999998765322                  23456788889999


Q ss_pred             EEEEECCCC-------ee--EEEEcc--CCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeecCCcc-eEEEE
Q psy8895         354 IRLWDLAAG-------KS--LCTLTN--HKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLPGHNA-IINSI  419 (479)
Q Consensus       354 v~iwd~~~~-------~~--~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~-~v~~l  419 (479)
                      ||.|+++.-       ++  .+.++.  .+-.=.+++|+.++.++.+++..  .+.+|....|.+++.+.|-++ ..-.+
T Consensus       220 IR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV  299 (405)
T KOG1273|consen  220 IRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV  299 (405)
T ss_pred             EEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec
Confidence            999998731       11  011100  01123578899999988888766  499999999999999998774 44455


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      .+.|-. .+++- ..|.+++|....
T Consensus       300 ~whp~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  300 NWHPVRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             ccccceeeeeec-cCCceEEEEeec
Confidence            566655 56655 779999998654

>KOG0302|consensus

Probab=99.81  E-value=2.6e-18  Score=153.16  Aligned_cols=205  Identities=22%  Similarity=0.356  Sum_probs=160.9

Q ss_pred             ecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCC----------------CceEEEEecCCcCEEEEEEcCCCC-E
Q psy8895         215 ISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLAT----------------GKLKLSLTGHVGSVRGLTVSPRHP-Y  275 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~----------------~~~~~~~~~h~~~v~~v~~~~~~~-~  275 (479)
                      ..+|.+.+..+..++-  ..+.++-+..|.|+||++..                .+.+.++.+|.+.=..++|||-.. .
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            3467777777776654  45677778889999999852                245678899998889999999322 4


Q ss_pred             EEEEECCCcEEEEECCCCCccc-CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcE
Q psy8895         276 LFSCGDDRTVKCWDLEYNKAPV-QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI  354 (479)
Q Consensus       276 l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v  354 (479)
                      |+||..-+.|++|...++.... ......+...|..+.|+|....                        .+++||-|++|
T Consensus       227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~------------------------vfaScS~DgsI  282 (440)
T KOG0302|consen  227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG------------------------VFASCSCDGSI  282 (440)
T ss_pred             cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc------------------------eEEeeecCceE
Confidence            7788778899999887654332 1223446777888888886543                        36789999999


Q ss_pred             EEEECCCC---eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC---CeEEeeecCCcceEEEEEEcCCC--
Q psy8895         355 RLWDLAAG---KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE---GKFIQNLPGHNAIINSICVNNEG--  425 (479)
Q Consensus       355 ~iwd~~~~---~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~---~~~~~~~~~h~~~v~~l~~~~~~--  425 (479)
                      +|||++.+   .++.+ +.|.+.|+.|+|+....+||+|++++ +++||+.+   ++.+-.++.|+.+|+++.++|..  
T Consensus       283 rIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  283 RIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            99999987   33433 78999999999999988999999886 99999854   56677889999999999999754  


Q ss_pred             EEEEEeCCCcEEEEecCCC
Q psy8895         426 VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~  444 (479)
                      .++++|.|..|.|||+...
T Consensus       362 ~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eEEeccCCCcEEEEEeecc
Confidence            8999999999999998754

>KOG0321|consensus

Probab=99.81  E-value=3.7e-18  Score=161.68  Aligned_cols=188  Identities=24%  Similarity=0.413  Sum_probs=136.8

Q ss_pred             cCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCc--------------------e-------EEEEecCCcCEEE-
Q psy8895         216 SGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGK--------------------L-------KLSLTGHVGSVRG-  266 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~--------------------~-------~~~~~~h~~~v~~-  266 (479)
                      .||++.|.+++|.|.. ..|++|+.||.|.|||++-..                    .       +....+|...|.+ 
T Consensus       141 ~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss  220 (720)
T KOG0321|consen  141 LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS  220 (720)
T ss_pred             cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee
Confidence            3688888888888854 578999999999999985211                    0       0112334555555 


Q ss_pred             --EEEcCCCCEEEEEEC-CCcEEEEECCCCCcccCCCC------CCC---CCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         267 --LTVSPRHPYLFSCGD-DRTVKCWDLEYNKAPVQPGS------MDS---ESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       267 --v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~------~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                        +-+..|...|+++|. |+.|++||+++.........      ..+   ..++.++..+..|.++.+.+.|++|..|++
T Consensus       221 vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm  300 (720)
T KOG0321|consen  221 VTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNM  300 (720)
T ss_pred             eEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEec
Confidence              556678889999887 99999999986654322110      011   245778888999999999999999999997


Q ss_pred             CCCC---------------------CCCCCeEEEEeCCCcEEEEECCCCe-eEEEEccCCCceEEEEEeCC-CcEEEEEc
Q psy8895         335 DDSA---------------------TEESHPVITGSHDCTIRLWDLAAGK-SLCTLTNHKKSVRSVALHPT-LYMFASAS  391 (479)
Q Consensus       335 ~~~~---------------------~~~~~~l~sgs~d~~v~iwd~~~~~-~~~~~~~h~~~v~~i~~~~~-~~~l~s~s  391 (479)
                      ....                     ..++..+++|+.|...++|.+...+ +...+.+|...|++++|.|. -.-+++++
T Consensus       301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcS  380 (720)
T KOG0321|consen  301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCS  380 (720)
T ss_pred             cccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeec
Confidence            5432                     1345679999999999999998753 45567799999999999874 23445558


Q ss_pred             CC-cEEEEeCCCC
Q psy8895         392 PD-NIKQWKCPEG  403 (479)
Q Consensus       392 ~d-~i~~w~~~~~  403 (479)
                      +| .+++|++..+
T Consensus       381 dD~~~kiW~l~~~  393 (720)
T KOG0321|consen  381 DDFRVKIWRLSNG  393 (720)
T ss_pred             cCcceEEEeccCc
Confidence            88 5999998544

>KOG4328|consensus

Probab=99.80  E-value=1.3e-17  Score=152.21  Aligned_cols=294  Identities=18%  Similarity=0.281  Sum_probs=195.2

Q ss_pred             ecCCcccceEEEEEccCCc--eEEEecCCCeEEEEeecccc----eEeeecccccceEEEEecCCCCccccceEEecccc
Q psy8895          28 HYHGHLSSVNTISLHPTID--VLITAGRDSTARVWDVRTKA----NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCE  101 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~--~laSgs~D~~vriWd~~t~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  101 (479)
                      .++-|...|.+++|||..+  .+|+|+.-|.|-+||+.+.+    .+..+..|+..|.++.|++.....    ++..   
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~----i~ss---  253 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ----IYSS---  253 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh----eeee---
Confidence            4567889999999999964  89999999999999996432    467788999999999998765421    1111   


Q ss_pred             EEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895         102 RIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP  181 (479)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  181 (479)
                                         ..+|+|+.-|++...-                                         ..+.
T Consensus       254 -------------------SyDGtiR~~D~~~~i~-----------------------------------------e~v~  273 (498)
T KOG4328|consen  254 -------------------SYDGTIRLQDFEGNIS-----------------------------------------EEVL  273 (498)
T ss_pred             -------------------ccCceeeeeeecchhh-----------------------------------------HHHh
Confidence                               1234555433321100                                         0000


Q ss_pred             CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EEEEecC
Q psy8895         182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KLSLTGH  260 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~h  260 (479)
                      ..                                ..-.....++.|+.+...++.+..-|...+||++++.. ...+..|
T Consensus       274 s~--------------------------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh  321 (498)
T KOG4328|consen  274 SL--------------------------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH  321 (498)
T ss_pred             hc--------------------------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhh
Confidence            00                                00112345667777777777777777999999988755 5567778


Q ss_pred             CcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895         261 VGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS  337 (479)
Q Consensus       261 ~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  337 (479)
                      ...|.+|+++|-.+ +++|+|.|++.+|||++..+....  .....+...|.+..|+|.+-.+++.+.|.+|++|+..- 
T Consensus       322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~-  400 (498)
T KOG4328|consen  322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC-  400 (498)
T ss_pred             hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeeccc-
Confidence            88999999999765 578999999999999975433222  33456777899999999887777777777777766420 


Q ss_pred             CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC------ceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeec
Q psy8895         338 ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK------SVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       338 ~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~------~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~  410 (479)
                                      +-    ....+..++. |..      ..-...|.|+..+++.+-.- .|.++|-..++.+..+.
T Consensus       401 ----------------~s----a~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~  459 (498)
T KOG4328|consen  401 ----------------IS----AKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH  459 (498)
T ss_pred             ----------------cc----ccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence                            00    1112222221 211      12345799999999888765 59999998888777765


Q ss_pred             CCcc-eEEEE-EEcCCC--EEEEEeCCCcEEEEecC
Q psy8895         411 GHNA-IINSI-CVNNEG--VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       411 ~h~~-~v~~l-~~~~~~--~l~sg~~dg~i~lWd~~  442 (479)
                      .... .|.++ .+.|-+  +++.++..|.|.||.-+
T Consensus       460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k  495 (498)
T KOG4328|consen  460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK  495 (498)
T ss_pred             CccccccccceeecccccceeccCCccceEEEEecC
Confidence            4432 45444 567765  44555567888888644

>KOG0642|consensus

Probab=99.80  E-value=1.2e-18  Score=163.04  Aligned_cols=241  Identities=21%  Similarity=0.424  Sum_probs=184.4

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--------CceEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--------GKLKLSLTGHVGSVRGLTVSPRHPYLFSC  279 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  279 (479)
                      .|.+-.++..|...++.++|.|....|++++.|+++++|+++.        -+.+.+|.+|.++|.|+++++++..+++|
T Consensus       283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysg  362 (577)
T KOG0642|consen  283 KWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSG  362 (577)
T ss_pred             ecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEee
Confidence            3555557888999999999999999999999999999999932        14578899999999999999999999999


Q ss_pred             ECCCcEEEEECCCCCc--------ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCe
Q psy8895         280 GDDRTVKCWDLEYNKA--------PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------EESHP  344 (479)
Q Consensus       280 ~~d~~i~~wd~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------~~~~~  344 (479)
                      |-||+|+.|++....-        .......++...++.+.+++...++++++.||++++|+......       ....+
T Consensus       363 g~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P  442 (577)
T KOG0642|consen  363 GIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP  442 (577)
T ss_pred             ccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence            9999999996642111        11222346778899999999999999999999999998765432       01111


Q ss_pred             E---------EEEeCCCcEEEE---ECCCCeeEEEEccC-------CCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe
Q psy8895         345 V---------ITGSHDCTIRLW---DLAAGKSLCTLTNH-------KKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK  404 (479)
Q Consensus       345 l---------~sgs~d~~v~iw---d~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~  404 (479)
                      +         +-...+...+.+   +++....+..+...       ...+..+..+|...+..++..+ .|+++|..+++
T Consensus       443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            1         001112333333   33333333333211       1246777888988888888877 49999999999


Q ss_pred             EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         405 FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       405 ~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      .++.+..|...|+++++.|+| +|++|+.|+++++|.+....+.+
T Consensus       523 ~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~  567 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL  567 (577)
T ss_pred             cchheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence            999999999999999999999 99999999999999998766654

>KOG0642|consensus

Probab=99.80  E-value=9.5e-19  Score=163.61  Aligned_cols=200  Identities=26%  Similarity=0.384  Sum_probs=140.7

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----------ceEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----------KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD  282 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  282 (479)
                      .++++|.++|.|+.+.++++.+++|+-||+|+.|++...          .....+.||.+.|+.+++|+....|++|+.|
T Consensus       338 ~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D  417 (577)
T KOG0642|consen  338 LTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD  417 (577)
T ss_pred             EEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCC
Confidence            367899999999999999999999999999999966421          2235688999999999999999899999999


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCC-----------eEEEEeCCCC-------------
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADK-----------TVKLYKEDDS-------------  337 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~-----------~i~~~~~~~~-------------  337 (479)
                      |++++|+...... .........+.-..+.+-... ...++....+           .++++.....             
T Consensus       418 gTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  418 GTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             ceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            9999999854333 111111111222333332211 0011000000           1111111000             


Q ss_pred             CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCc
Q psy8895         338 ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHN  413 (479)
Q Consensus       338 ~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~  413 (479)
                      ..+.....+++..|+.|+++|..+++.+.....|...++++++.|.+.+|.+++.|. +.+|.+....++.....|+
T Consensus       497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r  573 (577)
T KOG0642|consen  497 SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR  573 (577)
T ss_pred             ecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence            001234578899999999999999999999999999999999999999999998774 9999987766666555554

>KOG4227|consensus

Probab=99.80  E-value=1.9e-17  Score=148.28  Aligned_cols=221  Identities=14%  Similarity=0.239  Sum_probs=156.1

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC---cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV---GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      |...|.|++|+....++++|..+++|.+.|+.+.+.+..+. |.   +.|..+..+|....+++.+.++.|.+||++..+
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            67889999999999999999999999999999998877665 43   489999999988899999999999999998655


Q ss_pred             cccCCCC-CCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCC------------------------CCCeEEEE
Q psy8895         295 APVQPGS-MDSESGIFSMTFDNSGS-RLITTEADKTVKLYKEDDSATE------------------------ESHPVITG  348 (479)
Q Consensus       295 ~~~~~~~-~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~------------------------~~~~l~sg  348 (479)
                      .+..... -........+.|+|... .+++.+..+-+.+||.+.....                        .+..+++-
T Consensus       183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence            3322211 12234567788888654 5677888888999997654321                        01111111


Q ss_pred             eCCCcEEEEECCCCee-EEEEccCC--C-----ceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------------
Q psy8895         349 SHDCTIRLWDLAAGKS-LCTLTNHK--K-----SVRSVALHPTLYMFASASPD-NIKQWKCPEGK---------------  404 (479)
Q Consensus       349 s~d~~v~iwd~~~~~~-~~~~~~h~--~-----~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~---------------  404 (479)
                      -....=.+||+..+++ +..+ .|.  +     .+.+++|-.|.. +++++++ ++.+|.++...               
T Consensus       263 RR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~  340 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM  340 (609)
T ss_pred             hccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhC
Confidence            1111123456555332 2222 222  1     466777876665 7788888 69999875211               


Q ss_pred             --------EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         405 --------FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       405 --------~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                              .+..++||+..++.+.|++.. +|++.+-...++||.-
T Consensus       341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             chhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence                    134578999999999999987 8889999999999974

>KOG1273|consensus

Probab=99.80  E-value=3.8e-18  Score=148.70  Aligned_cols=226  Identities=14%  Similarity=0.289  Sum_probs=166.3

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      ..|+.|++.|.++|.|+.||.|.|||+.+......+.+|.-+|.+++||+||+.|+|+|.|..|++||+..+.+..+.  
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri--  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI--  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence            789999999999999999999999999999888899999999999999999999999999999999999877644332  


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCC---------------------CCCCCCeEEEEeCCCcEEEEEC
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDS---------------------ATEESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~---------------------~~~~~~~l~sgs~d~~v~iwd~  359 (479)
                       --.++|+...|+|.....+.++. +..-.+.+..+.                     ....+.++++|...|.+.++|.
T Consensus       104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence             23467888888876543333321 111111111100                     1123467999999999999999


Q ss_pred             CCCeeEEEEccCC-CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC-------eE--EeeecC--CcceEEEEEEcCCC-
Q psy8895         360 AAGKSLCTLTNHK-KSVRSVALHPTLYMFASASPDN-IKQWKCPEG-------KF--IQNLPG--HNAIINSICVNNEG-  425 (479)
Q Consensus       360 ~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~-------~~--~~~~~~--h~~~v~~l~~~~~~-  425 (479)
                      .+.+++..++--. ..|..+.++..+..|+.-+.|. |+.++...-       ++  .+.++.  .+..=.+.||+.+| 
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            9999998887544 7899999999999888887776 889886421       11  111110  01122466899999 


Q ss_pred             EEEEEe-CCCcEEEEecCCCeEEEEE
Q psy8895         426 VLVSGA-DNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       426 ~l~sg~-~dg~i~lWd~~~~~~~~~~  450 (479)
                      ++++|+ .--.+.||+-.+|..++.+
T Consensus       263 Yv~a~s~~aHaLYIWE~~~GsLVKIL  288 (405)
T KOG1273|consen  263 YVCAGSARAHALYIWEKSIGSLVKIL  288 (405)
T ss_pred             EEEeccccceeEEEEecCCcceeeee
Confidence            665554 3456899999998777665

>KOG0269|consensus

Probab=99.80  E-value=3.3e-19  Score=172.19  Aligned_cols=195  Identities=25%  Similarity=0.365  Sum_probs=153.8

Q ss_pred             EEEcC-CCcEEEEEeCCCeEEEEECCC---CceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCC
Q psy8895         225 VAVEP-GNEWFATGSADKIIKVWDLAT---GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       225 ~~~~~-~g~~l~sgs~d~~i~iWd~~~---~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      +.|.. +.++||+++..|.|.+||+..   .+.+..|..|+-.+++++|++..+ +|++||+||+|++||++........
T Consensus        93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~  172 (839)
T KOG0269|consen   93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF  172 (839)
T ss_pred             cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence            44442 468999999999999999986   456668899999999999998654 6789999999999999866544332


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEccCCCceEEE
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTNHKKSVRSV  378 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~h~~~v~~i  378 (479)
                        ......|..|+|+|..                        ...++++...|.+++||++.. ++...+..|.++|.++
T Consensus       173 --~~nSESiRDV~fsp~~------------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~  226 (839)
T KOG0269|consen  173 --RSNSESIRDVKFSPGY------------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCL  226 (839)
T ss_pred             --cccchhhhceeeccCC------------------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEE
Confidence              2345678899998853                        234677888889999999864 4566778899999999


Q ss_pred             EEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-cceEEEEEEcCCC--EEEEEe--CCCcEEEEecCCCe
Q psy8895         379 ALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-NAIINSICVNNEG--VLVSGA--DNGTMCFWDWRTGY  445 (479)
Q Consensus       379 ~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~--~l~sg~--~dg~i~lWd~~~~~  445 (479)
                      .|+|++.+||+|+.|+ +++|+..+++....+.-+ ..+|.++.+-|+.  .|++++  .|-.|++||++..|
T Consensus       227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY  299 (839)
T KOG0269|consen  227 NWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY  299 (839)
T ss_pred             eecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence            9999999999999886 999998765443222222 3578999999887  688776  58899999999776

>KOG2445|consensus

Probab=99.80  E-value=3.5e-17  Score=142.40  Aligned_cols=273  Identities=19%  Similarity=0.258  Sum_probs=179.3

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeeccc----ceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK----ANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      .+|.+-|.++.|++-|+.+||||+|++|+|||....    .+....+.|.+++..+.+.+.+  .|+. +.         
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPE--fGqv-vA---------   77 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPE--FGQV-VA---------   77 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcc--ccce-EE---------
Confidence            489999999999999999999999999999996433    3455667899999988875432  2221 11         


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                   +-..++++++|+-...+                                                 .
T Consensus        78 -------------~cS~Drtv~iWEE~~~~-------------------------------------------------~   95 (361)
T KOG2445|consen   78 -------------TCSYDRTVSIWEEQEKS-------------------------------------------------E   95 (361)
T ss_pred             -------------EEecCCceeeeeecccc-------------------------------------------------c
Confidence                         11234556666421000                                                 0


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCCC------ceEEEE
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLATG------KLKLSL  257 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~------~~~~~~  257 (479)
                      +                 .-...|....++......|+.+.|.|.  |-.||+++.||.+|||+.-.-      .++..+
T Consensus        96 ~-----------------~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei  158 (361)
T KOG2445|consen   96 E-----------------AHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI  158 (361)
T ss_pred             c-----------------cccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence            0                 000123444567777889999999984  778999999999999986432      222233


Q ss_pred             e-------cCCcCEEEEEEcCC---CCEEEEEECC-----CcEEEEECCCCC--cccCCCCCCCCCCeEEEEEeCCC---
Q psy8895         258 T-------GHVGSVRGLTVSPR---HPYLFSCGDD-----RTVKCWDLEYNK--APVQPGSMDSESGIFSMTFDNSG---  317 (479)
Q Consensus       258 ~-------~h~~~v~~v~~~~~---~~~l~s~~~d-----~~i~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~---  317 (479)
                      +       .+..+..|+.|+|.   .++++.|+.+     +.++||......  ......-.++...|..++|.|+-   
T Consensus       159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~  238 (361)
T KOG2445|consen  159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS  238 (361)
T ss_pred             hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence            2       45667889999874   3466666655     488999765332  22111123667889999999863   


Q ss_pred             -CEEEEEeCCCeEEEEeCCCCCCCCC-CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-
Q psy8895         318 -SRLITTEADKTVKLYKEDDSATEES-HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-  394 (479)
Q Consensus       318 -~~l~~~~~d~~i~~~~~~~~~~~~~-~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-  394 (479)
                       ..+++++.|| |++|.......+-. .-+.+...     .-++. -+.+..+.+|.+.|+.+.|+=.|..|++.++|+ 
T Consensus       239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~-----~~~l~-v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~  311 (361)
T KOG2445|consen  239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDL-----MTDLP-VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC  311 (361)
T ss_pred             eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCC-----ccccc-eEEeeeccCCCCceEEEEEeeeeeEEeecCCCce
Confidence             3677888888 88887654321100 00001100     00111 134566788999999999999999999999886 


Q ss_pred             EEEEeC
Q psy8895         395 IKQWKC  400 (479)
Q Consensus       395 i~~w~~  400 (479)
                      +++|..
T Consensus       312 VRLWka  317 (361)
T KOG2445|consen  312 VRLWKA  317 (361)
T ss_pred             eeehhh
Confidence            999964

>KOG0269|consensus

Probab=99.80  E-value=5.1e-19  Score=170.93  Aligned_cols=234  Identities=22%  Similarity=0.349  Sum_probs=173.9

Q ss_pred             ceEEEEEcc-CCceEEEecCCCeEEEEeecc---cceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          35 SVNTISLHP-TIDVLITAGRDSTARVWDVRT---KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        35 ~V~~l~~sp-~g~~laSgs~D~~vriWd~~t---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      +...+.|+. +.++|||++..|.|-+||+..   .+.+..|..|+-.+..+.|...++..                    
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~i--------------------  148 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNI--------------------  148 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccE--------------------
Confidence            445566662 258999999999999999976   55667889999999999998776641                    


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                            +-++.++|.++.||++..+.                                                      
T Consensus       149 ------liSGSQDg~vK~~DlR~~~S------------------------------------------------------  168 (839)
T KOG0269|consen  149 ------LISGSQDGTVKCWDLRSKKS------------------------------------------------------  168 (839)
T ss_pred             ------EEecCCCceEEEEeeecccc------------------------------------------------------
Confidence                  22345678899998753110                                                      


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEE
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLT  268 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~  268 (479)
                                           .-++.+..+.|+.+.|+| .+..++++...|.+++||++.. ++...+.+|.++|.|+.
T Consensus       169 ---------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~n  227 (839)
T KOG0269|consen  169 ---------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLN  227 (839)
T ss_pred             ---------------------cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEe
Confidence                                 001223456788899988 5778999999999999999754 56678899999999999


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEE
Q psy8895         269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG  348 (479)
Q Consensus       269 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sg  348 (479)
                      |+|++.+|+|||.|+.|+|||+...+.. ..........+.+++|.|.-.+.                        |+++
T Consensus       228 whPnr~~lATGGRDK~vkiWd~t~~~~~-~~~tInTiapv~rVkWRP~~~~h------------------------LAtc  282 (839)
T KOG0269|consen  228 WHPNREWLATGGRDKMVKIWDMTDSRAK-PKHTINTIAPVGRVKWRPARSYH------------------------LATC  282 (839)
T ss_pred             ecCCCceeeecCCCccEEEEeccCCCcc-ceeEEeecceeeeeeeccCccch------------------------hhhh
Confidence            9999999999999999999999754322 11123344567888888865432                        3333


Q ss_pred             e--CCCcEEEEECCC-CeeEEEEccCCCceEEEEEeC-CCcEEEEEcCCc
Q psy8895         349 S--HDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHP-TLYMFASASPDN  394 (479)
Q Consensus       349 s--~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~  394 (479)
                      +  .|..|++||++. --+..++..|+..++.++|.. |...|.+++.|.
T Consensus       283 smv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~  332 (839)
T KOG0269|consen  283 SMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDG  332 (839)
T ss_pred             hccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCcc
Confidence            3  377899999975 356788899999999999965 455666666664

>KOG1009|consensus

Probab=99.79  E-value=2.7e-17  Score=148.07  Aligned_cols=322  Identities=20%  Similarity=0.306  Sum_probs=201.3

Q ss_pred             cceEEEEEccCCc-eEEEecCCCeEEEEeecccce---------EeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          34 SSVNTISLHPTID-VLITAGRDSTARVWDVRTKAN---------VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        34 ~~V~~l~~sp~g~-~laSgs~D~~vriWd~~t~~~---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      .+|.++.|++.+. .||||+.|..||||-++.+..         +..|..|...|+.+-|++....              
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gel--------------   79 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGEL--------------   79 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCe--------------
Confidence            4899999998876 999999999999999875432         3356789999999988765321              


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                                   +.+..+.+++-+|.....+                                           ..   
T Consensus        80 -------------LASg~D~g~v~lWk~~~~~-------------------------------------------~~---  100 (434)
T KOG1009|consen   80 -------------LASGGDGGEVFLWKQGDVR-------------------------------------------IF---  100 (434)
T ss_pred             -------------eeecCCCceEEEEEecCcC-------------------------------------------Cc---
Confidence                         2223344555555432100                                           00   


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                      +.+. .        .    ....+.|...+.+.+|...+..++|+|++.++++++.|+++++||+..|+....+..|..-
T Consensus       101 ~~d~-e--------~----~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen  101 DADT-E--------A----DLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             cccc-h--------h----hhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc
Confidence            0000 0        0    0112335666788999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      +..++|.|-++++++-+.|...+.+.+...+.......    ..+..-.+.+.......-..|.+++.|-.+...++++.
T Consensus       168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~----~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~  243 (434)
T KOG1009|consen  168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGL----DIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS  243 (434)
T ss_pred             cceeecchhhhhhhhhccCcccceeeeeeeeeeeeeee----eEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence            99999999999999999998777776643222110000    00000000111111111112222222222222222222


Q ss_pred             eEEEEeC----C-----CcEEEEECCC-CeeEEEEccCCCceEEEEEeC------------------CCcEEEEEcCCcE
Q psy8895         344 PVITGSH----D-----CTIRLWDLAA-GKSLCTLTNHKKSVRSVALHP------------------TLYMFASASPDNI  395 (479)
Q Consensus       344 ~l~sgs~----d-----~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~------------------~~~~l~s~s~d~i  395 (479)
                      .+++.+.    +     ++.++++-.. .++...+.....++.++.++|                  -.-.||.++.+.+
T Consensus       244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~sv  323 (434)
T KOG1009|consen  244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSV  323 (434)
T ss_pred             EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceE
Confidence            2222110    1     1223332221 233444443333333333333                  2346788889999


Q ss_pred             EEEeCCCCeEEeeecC-CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         396 KQWKCPEGKFIQNLPG-HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      .+||..+.+.+....+ |-..++.+++++|| .|+..|.||.+.+-.++..+
T Consensus       324 yvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  324 YVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            9999888777665544 77889999999999 88889999999988877654

>KOG0307|consensus

Probab=99.78  E-value=1.2e-18  Score=175.44  Aligned_cols=209  Identities=26%  Similarity=0.381  Sum_probs=162.5

Q ss_pred             cEEEEEEcCCCc----EEEEEeCCCeEEEEECCC---C---ceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEE
Q psy8895         221 WVRCVAVEPGNE----WFATGSADKIIKVWDLAT---G---KLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWD  289 (479)
Q Consensus       221 ~v~~~~~~~~g~----~l~sgs~d~~i~iWd~~~---~---~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd  289 (479)
                      ....++|.+.|.    +||.|..||.|.+||...   +   ..+.+...|++.|..+.|++.+. .|++|+.||.|.+||
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD  145 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD  145 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence            345677776554    499999999999999865   2   23556788999999999999876 899999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      +.+.+.+.........+.|.+++|+..-                        .+.|++++.+|++-|||++..+++-.+.
T Consensus       146 lnn~~tP~~~~~~~~~~eI~~lsWNrkv------------------------qhILAS~s~sg~~~iWDlr~~~pii~ls  201 (1049)
T KOG0307|consen  146 LNKPETPFTPGSQAPPSEIKCLSWNRKV------------------------SHILASGSPSGRAVIWDLRKKKPIIKLS  201 (1049)
T ss_pred             cCCcCCCCCCCCCCCcccceEeccchhh------------------------hHHhhccCCCCCceeccccCCCcccccc
Confidence            9876655554433345567777776432                        3457889999999999999998888877


Q ss_pred             cCCC--ceEEEEEeCCC-cEEEEEc-CCc---EEEEeCCC-CeEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEE
Q psy8895         370 NHKK--SVRSVALHPTL-YMFASAS-PDN---IKQWKCPE-GKFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFW  439 (479)
Q Consensus       370 ~h~~--~v~~i~~~~~~-~~l~s~s-~d~---i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lW  439 (479)
                      .|.+  .+..++|+|+. ..++.++ +|+   |.+||++. ...++.+.+|...|.++.+.+..  +|+|++.|++|.+|
T Consensus       202 ~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w  281 (1049)
T KOG0307|consen  202 DTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW  281 (1049)
T ss_pred             cCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence            6644  47889999974 3444444 443   89999754 35678889999999999887544  89999999999999


Q ss_pred             ecCCCeEEEEEEEe
Q psy8895         440 DWRTGYNFQRLQVR  453 (479)
Q Consensus       440 d~~~~~~~~~~~~~  453 (479)
                      +.+||+.+..+.++
T Consensus       282 N~~tgEvl~~~p~~  295 (1049)
T KOG0307|consen  282 NPNTGEVLGELPAQ  295 (1049)
T ss_pred             cCCCceEeeecCCC
Confidence            99999998877663

>KOG0307|consensus

Probab=99.76  E-value=5.2e-18  Score=171.04  Aligned_cols=208  Identities=20%  Similarity=0.324  Sum_probs=164.7

Q ss_pred             cCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECC
Q psy8895         216 SGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~  291 (479)
                      ..|++.|..+.|++.. ++||+|+.||.|.|||+.+-+....+.  ...+.|.+++|+..- ..|++++.+|.+-+||++
T Consensus       113 ~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr  192 (1049)
T KOG0307|consen  113 SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR  192 (1049)
T ss_pred             cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc
Confidence            4599999999999965 599999999999999998755443331  234689999998753 457788999999999999


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCC-EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEEEEc
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGS-RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLCTLT  369 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~  369 (479)
                      ..+.+...........+..+.|+|+.. .+++++.|..                      .-.|.+||++. ..++++++
T Consensus       193 ~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~----------------------~PviqlWDlR~assP~k~~~  250 (1049)
T KOG0307|consen  193 KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS----------------------APVIQLWDLRFASSPLKILE  250 (1049)
T ss_pred             CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC----------------------CceeEeecccccCCchhhhc
Confidence            887666655444445678899999754 4444444321                      12478888875 35778889


Q ss_pred             cCCCceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCe
Q psy8895         370 NHKKSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~  445 (479)
                      +|...|.+++|++.. .++++++.|+ +.+|+..+++.+..+.....++..+.|.|..  .++.++-||.|.|+.+.++-
T Consensus       251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999999999999855 7777777775 9999999999999999988999999999865  88899999999999998653

>KOG0270|consensus

Probab=99.76  E-value=2.1e-17  Score=150.36  Aligned_cols=189  Identities=23%  Similarity=0.356  Sum_probs=140.0

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCce---------------------EEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEE
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKL---------------------KLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKC  287 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~---------------------~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~  287 (479)
                      .|+++|.|+.|..|.|||+.-...                     ...-.+|++.|.+++|+...+ .|++||.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            468999999999999999852110                     011246888888888887644 6789999999999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LC  366 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~  366 (479)
                      ||+.++++.....  .+...|.++.|+|...                        ..+++|+.|++|.+.|.+.... -.
T Consensus       271 WD~~~g~p~~s~~--~~~k~Vq~l~wh~~~p------------------------~~LLsGs~D~~V~l~D~R~~~~s~~  324 (463)
T KOG0270|consen  271 WDVDTGKPKSSIT--HHGKKVQTLEWHPYEP------------------------SVLLSGSYDGTVALKDCRDPSNSGK  324 (463)
T ss_pred             EEcCCCCcceehh--hcCCceeEEEecCCCc------------------------eEEEeccccceEEeeeccCccccCc
Confidence            9999888765432  3567888999988533                        2356777777777777773211 11


Q ss_pred             EEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCC-CeEEeeecCCcceEEEEEEcCC--CEEEEEeCCCcEEEEec
Q psy8895         367 TLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPE-GKFIQNLPGHNAIINSICVNNE--GVLVSGADNGTMCFWDW  441 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~--~~l~sg~~dg~i~lWd~  441 (479)
                      .+ .-.+.|..++|.|.. ..|.++.+| .++-+|.+. ++++.+++.|.+.|+++++++.  ++++|+|.|+.+++|++
T Consensus       325 ~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~  403 (463)
T KOG0270|consen  325 EW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF  403 (463)
T ss_pred             eE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence            11 124678899998864 455555555 588889865 4889999999999999999865  48999999999999998


Q ss_pred             CCCe
Q psy8895         442 RTGY  445 (479)
Q Consensus       442 ~~~~  445 (479)
                      ..-.
T Consensus       404 ~~~~  407 (463)
T KOG0270|consen  404 DVDS  407 (463)
T ss_pred             cCCC
Confidence            7443

>KOG0322|consensus

Probab=99.76  E-value=1.5e-17  Score=141.56  Aligned_cols=158  Identities=23%  Similarity=0.340  Sum_probs=114.3

Q ss_pred             CCccEEEEEEcC-CCc--EEEEEeCCCeEEEEECCCCce----------EEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         218 HLGWVRCVAVEP-GNE--WFATGSADKIIKVWDLATGKL----------KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       218 h~~~v~~~~~~~-~g~--~l~sgs~d~~i~iWd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      -.+.+.|..+.- .++  +++.|-++|.+.+||+.++..          ......|..+|.++.+.+.-..=++|+.+..
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            456677776432 233  467888999999999999833          3334568899999999876555577888888


Q ss_pred             EEEEECCCC--CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q psy8895         285 VKCWDLEYN--KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       285 i~~wd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~  362 (479)
                      +..|.++..  ..+......-.+-++..+...|+                         ...++|+++|+.||+|+.++.
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD-------------------------~KIlATAGWD~RiRVyswrtl  283 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPD-------------------------GKILATAGWDHRIRVYSWRTL  283 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccC-------------------------CcEEeecccCCcEEEEEeccC
Confidence            889987643  11111000001112333333333                         345788999999999999999


Q ss_pred             eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895         363 KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKC  400 (479)
Q Consensus       363 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~  400 (479)
                      +++..++.|...|++++|+|+..++|+++.|. |-+|++
T Consensus       284 ~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  284 NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999995 999975

>KOG1034|consensus

Probab=99.76  E-value=2e-17  Score=145.04  Aligned_cols=245  Identities=20%  Similarity=0.353  Sum_probs=160.2

Q ss_pred             cccccCceEEEeecccceeEeeE-----EeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecccceEeeecccc
Q psy8895           2 WDLATGKLKLSLTGHVGSVRGLT-----VIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRTKANVYTLTGHT   75 (479)
Q Consensus         2 Wd~~~~~~~~~~~g~~~~v~~~~-----~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t~~~~~~~~~h~   75 (479)
                      +|++++-+.+...|-.+.++-+.     +.+.+.||..+|+.|.|+|+. ++++|||.|.+||+||+++..++..|.|  
T Consensus        99 yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG--  176 (385)
T KOG1034|consen   99 YDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGG--  176 (385)
T ss_pred             ecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecc--
Confidence            35566666666677667666654     456789999999999999995 7999999999999999988766532210  


Q ss_pred             cceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEe
Q psy8895          76 NTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVF  155 (479)
Q Consensus        76 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (479)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (385)
T KOG1034|consen  177 --------------------------------------------------------------------------------  176 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEE
Q psy8895         156 RSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFA  235 (479)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~  235 (479)
                                                                                 +.||.+.|.++.|+++|.+|+
T Consensus       177 -----------------------------------------------------------~egHrdeVLSvD~~~~gd~i~  197 (385)
T KOG1034|consen  177 -----------------------------------------------------------VEGHRDEVLSVDFSLDGDRIA  197 (385)
T ss_pred             -----------------------------------------------------------cccccCcEEEEEEcCCCCeee
Confidence                                                                       237899999999999999999


Q ss_pred             EEeCCCeEEEEECCCCceEE----------------------------EEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         236 TGSADKIIKVWDLATGKLKL----------------------------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       236 sgs~d~~i~iWd~~~~~~~~----------------------------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      |++.|.++++|++...+...                            +-..|...|.|+.|-  |.++++=|-++.|..
T Consensus       198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~  275 (385)
T KOG1034|consen  198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVC  275 (385)
T ss_pred             ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEE
Confidence            99999999999997332110                            112345555555554  457888888899999


Q ss_pred             EECCC-CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         288 WDLEY-NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       288 wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      |.... .+......  .+++..          .++---.-....+|...-....-...|+.|.+.|.|.+||++...+..
T Consensus       276 w~pgkl~e~~~~vk--p~es~~----------Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~  343 (385)
T KOG1034|consen  276 WKPGKLEESIHNVK--PPESAT----------TILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK  343 (385)
T ss_pred             EecchhhhhhhccC--CCccce----------eeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence            98732 22111110  001100          000000001112222222222223457788888899999988766522


Q ss_pred             --EEcc--CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCC
Q psy8895         367 --TLTN--HKKSVRSVALHPTLYMFASASPD-NIKQWKCP  401 (479)
Q Consensus       367 --~~~~--h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~  401 (479)
                        ++..  ....|+..+|+.|+.+++...+| .|..||..
T Consensus       344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence              2222  24579999999999888777766 48888853

>KOG0771|consensus

Probab=99.75  E-value=4.3e-17  Score=147.86  Aligned_cols=217  Identities=19%  Similarity=0.262  Sum_probs=155.7

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      .+++|+.+|..+++|+.||.+|+|+..+...+.....|..+|.++.|+||+++|++.+.| ..++|+.+++.........
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            789999999999999999999999988888878888899999999999999999999999 9999999887544333223


Q ss_pred             CCCCCeEEEEEeCCC---CE-EE-EEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         303 DSESGIFSMTFDNSG---SR-LI-TTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       303 ~~~~~i~~~~~~~~~---~~-l~-~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      +.......+.|..+.   .+ ++ ....-+.+++++                    +.+|+-..--+......-...|++
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~--------------------~~~w~~~~~l~~~~~~~~~~siSs  286 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD--------------------ISLWSGSNFLRLRKKIKRFKSISS  286 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEE--------------------eeeeccccccchhhhhhccCccee
Confidence            333344556665543   11 11 111112222222                    223332111111111122347999


Q ss_pred             EEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         378 VALHPTLYMFASASPDN-IKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       378 i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      +++++++++++-++.++ |-+++..+.++++-. +.|...|+.+.|+||. .+++-+.|.+..+--+.-.+..+.-.++.
T Consensus       287 l~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~~~~~~~~~~  366 (398)
T KOG0771|consen  287 LAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDKTMQLHRLPK  366 (398)
T ss_pred             EEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeeccccccccccc
Confidence            99999999999999885 999999888877654 5799999999999998 89999999999988877655555555555


Q ss_pred             ecCCCC
Q psy8895         455 VSGFPK  460 (479)
Q Consensus       455 ~~~~~~  460 (479)
                      ++++|.
T Consensus       367 ~~~~~~  372 (398)
T KOG0771|consen  367 RRKIPA  372 (398)
T ss_pred             chhhhH
Confidence            666664

>KOG0303|consensus

Probab=99.75  E-value=1.9e-16  Score=142.17  Aligned_cols=205  Identities=22%  Similarity=0.360  Sum_probs=153.9

Q ss_pred             EecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCc
Q psy8895         214 VISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRT  284 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~  284 (479)
                      .+.||+++|..+.|+| +...|||||.|.+|+||.+..+       +.+..+.+|...|..++|+|.. ..|+++|.|++
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            4679999999999999 5678999999999999998654       3467889999999999999964 46789999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      |.+|++.++......   .+...|+++.|+.+|..+++.+                         .|..|||||.++++.
T Consensus       156 v~iWnv~tgeali~l---~hpd~i~S~sfn~dGs~l~Ttc-------------------------kDKkvRv~dpr~~~~  207 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL---DHPDMVYSMSFNRDGSLLCTTC-------------------------KDKKVRVIDPRRGTV  207 (472)
T ss_pred             EEEEeccCCceeeec---CCCCeEEEEEeccCCceeeeec-------------------------ccceeEEEcCCCCcE
Confidence            999999998876553   4778899999999888776554                         455677777778888


Q ss_pred             EEEEccCCCc-eEEEEEeCCCcEEEEEcCC----cEEEEeCCCCe---EEeeecCCcceEEEEEEcCCC--EEEEEeCCC
Q psy8895         365 LCTLTNHKKS-VRSVALHPTLYMFASASPD----NIKQWKCPEGK---FIQNLPGHNAIINSICVNNEG--VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h~~~-v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~---~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg  434 (479)
                      +..-..|.+. -..+-|-.++.++.++-..    .+-+||..+-+   ...++....+.+. -.+.+|.  ..+.|-.|+
T Consensus       208 v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  208 VSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL-PFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             eeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE-eeecCCCCEEEEEecCCc
Confidence            7776677652 2334455667766666432    48899865433   2455555555433 3456665  456788999


Q ss_pred             cEEEEecCCCeEE
Q psy8895         435 TMCFWDWRTGYNF  447 (479)
Q Consensus       435 ~i~lWd~~~~~~~  447 (479)
                      .||.|++....++
T Consensus       287 ~IRYyEit~d~P~  299 (472)
T KOG0303|consen  287 SIRYFEITNEPPF  299 (472)
T ss_pred             ceEEEEecCCCce
Confidence            9999999876543

>KOG0650|consensus

Probab=99.75  E-value=1.4e-16  Score=149.94  Aligned_cols=237  Identities=19%  Similarity=0.362  Sum_probs=162.0

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-EEEEECCCcEE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-LFSCGDDRTVK  286 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~  286 (479)
                      |..+...+.||++.|.|++..|.|.+|++|+.||+||||.+.+|+|+..+. ..+.|+|++|+|.+.. ++.+..+..+.
T Consensus       389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~  467 (733)
T KOG0650|consen  389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVL  467 (733)
T ss_pred             cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceE
Confidence            344556788999999999999999999999999999999999999998776 4568999999997653 22334444455


Q ss_pred             EEECCCCCcc--------cCCCCCCCCCCeEEEEEeCC----C--CEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEe---
Q psy8895         287 CWDLEYNKAP--------VQPGSMDSESGIFSMTFDNS----G--SRLITTEADKTVKLYKEDDSATEESHPVITGS---  349 (479)
Q Consensus       287 ~wd~~~~~~~--------~~~~~~~~~~~i~~~~~~~~----~--~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs---  349 (479)
                      +-+...+...        +.............+.|+..    .  ..-++.+..+.|+-..    ....+.++++..   
T Consensus       468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vt----WHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVT----WHRKGDYLATVMPDS  543 (733)
T ss_pred             EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceee----eecCCceEEEeccCC
Confidence            6554333111        00000000000112233322    0  0111112222221100    012234454433   


Q ss_pred             CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      ....|.|.++...+...-|....+.|.++.|+|...+|..++...|++||+..+++++.+..-..+|..++++|.| .|+
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli  623 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI  623 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence            3456888898877766667666788999999999999999999999999999988888887777899999999988 888


Q ss_pred             EEeCCCcEEEEecCCC-eEEEE
Q psy8895         429 SGADNGTMCFWDWRTG-YNFQR  449 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~-~~~~~  449 (479)
                      .|+.|+.+.++|+.-+ .++++
T Consensus       624 ~gs~d~k~~WfDldlsskPyk~  645 (733)
T KOG0650|consen  624 LGSYDKKMCWFDLDLSSKPYKT  645 (733)
T ss_pred             EecCCCeeEEEEcccCcchhHH
Confidence            9999999999999854 34444

>KOG2055|consensus

Probab=99.75  E-value=2.6e-16  Score=143.99  Aligned_cols=245  Identities=14%  Similarity=0.229  Sum_probs=183.7

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--CceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCc
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+.|+++.|+|.-..+++++.|++++||-+..  ...+..+.-...+|.+.+|.|+|. .++++|.-..++.||+++.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~  292 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV  292 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence            57899999999999999999999999998753  344555554567999999999999 888999999999999987664


Q ss_pred             ccCCCCCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEEE
Q psy8895         296 PVQPGSMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       296 ~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iwd  358 (479)
                      .......+ .+..+.....++++++++..+..|.|.+.-....+                ..++..++..+.+|.|.+||
T Consensus       293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n  372 (514)
T KOG2055|consen  293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN  372 (514)
T ss_pred             ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence            32211111 23456677788999999999999999886543321                23456788888899999999


Q ss_pred             CCCCeeEEEEccCCCce--EEEEEeCCCcEEEEEcCCc-EEEEeCCC------CeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895         359 LAAGKSLCTLTNHKKSV--RSVALHPTLYMFASASPDN-IKQWKCPE------GKFIQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v--~~i~~~~~~~~l~s~s~d~-i~~w~~~~------~~~~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      ++...+++++.. ++.|  ++++.++++.+||+|++.+ |-|||..+      .++++++..-...|+.+.|++|. .||
T Consensus       373 l~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLA  451 (514)
T KOG2055|consen  373 LRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILA  451 (514)
T ss_pred             cCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhh
Confidence            999999998864 3333  6788889999999999987 78998543      34566666777789999999999 544


Q ss_pred             EE--eCCCcEEEEecCCCeEEEEEEEeEecCCCC---CceEEeeehhhh
Q psy8895         429 SG--ADNGTMCFWDWRTGYNFQRLQVRCVSGFPK---PSVFFFFLAFSY  472 (479)
Q Consensus       429 sg--~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  472 (479)
                      -+  ..+..+|+-.+.+...        .+-||.   +-+.+-|+||++
T Consensus       452 iaS~~~knalrLVHvPS~TV--------FsNfP~~n~~vg~vtc~aFSP  492 (514)
T KOG2055|consen  452 IASRVKKNALRLVHVPSCTV--------FSNFPTSNTKVGHVTCMAFSP  492 (514)
T ss_pred             hhhhccccceEEEeccceee--------eccCCCCCCcccceEEEEecC
Confidence            44  4567788877776433        344552   333455666666

>KOG4378|consensus

Probab=99.74  E-value=2.7e-16  Score=144.94  Aligned_cols=189  Identities=18%  Similarity=0.229  Sum_probs=149.0

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC-CcCEEEEEEcCCCCEEE-EEECCCcEEEEECCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH-VGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEY  292 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~  292 (479)
                      +.+|...|+++.++...++||+++..|.|.|..+.++....+|.-- ...|+-+.+++..++++ +++++|.|.+||+..
T Consensus       117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g  196 (673)
T KOG4378|consen  117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG  196 (673)
T ss_pred             ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence            5689999999999999999999999999999999998776666533 34677999999887655 689999999999975


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ..+.... ...|..+...+.|+|....+                        +++.+.|..|.+||....+...++.. +
T Consensus       197 ~sp~~~~-~~~HsAP~~gicfspsne~l------------------------~vsVG~Dkki~~yD~~s~~s~~~l~y-~  250 (673)
T KOG4378|consen  197 MSPIFHA-SEAHSAPCRGICFSPSNEAL------------------------LVSVGYDKKINIYDIRSQASTDRLTY-S  250 (673)
T ss_pred             CCcccch-hhhccCCcCcceecCCccce------------------------EEEecccceEEEeecccccccceeee-c
Confidence            5443322 22355566678888765433                        57778889999999988777777653 4


Q ss_pred             CceEEEEEeCCCcEEEEEcCC-cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895         373 KSVRSVALHPTLYMFASASPD-NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEGVLVS  429 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~~l~s  429 (479)
                      .+..+++|+++|.+|+.|+.. ++..||+.. ..++..+..|...|++++|-+...+++
T Consensus       251 ~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvlt  309 (673)
T KOG4378|consen  251 HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVLT  309 (673)
T ss_pred             CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceeee
Confidence            578999999999999888765 599999864 456788899999999999977665554

>KOG4328|consensus

Probab=99.74  E-value=4.7e-16  Score=142.15  Aligned_cols=234  Identities=18%  Similarity=0.255  Sum_probs=169.0

Q ss_pred             EecCCCccEEEEEEcCCC--cEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEE
Q psy8895         214 VISGHLGWVRCVAVEPGN--EWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVK  286 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g--~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~  286 (479)
                      ...-|.+.|++++|+|..  +.+|+|...|.|-+||+.+.    .-...+..|..+|.++.|+|.. ..+++.|.||+|+
T Consensus       181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR  260 (498)
T KOG4328|consen  181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIR  260 (498)
T ss_pred             eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceee
Confidence            344578999999999954  57899999999999999533    2356788899999999999964 4788999999999


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-------------------CCCeEEE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-------------------ESHPVIT  347 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-------------------~~~~l~s  347 (479)
                      +-|++..........-.....+..+.|+.....++.+..-|...+||.+....+                   ....++|
T Consensus       261 ~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT  340 (498)
T KOG4328|consen  261 LQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLAT  340 (498)
T ss_pred             eeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheee
Confidence            999986543221111123345667788887788888888888899997765432                   1346899


Q ss_pred             EeCCCcEEEEECCCCe----eEEEEccCCCceEEEEEeCCCcEEEEEc-CCcEEEEeCC----CCeEEeeec---CCcce
Q psy8895         348 GSHDCTIRLWDLAAGK----SLCTLTNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCP----EGKFIQNLP---GHNAI  415 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~----~~~~~~~~~---~h~~~  415 (479)
                      +|-|++++|||++.-.    ++.....|+.+|.+..|||.+-.+++.+ ++.|++||..    .-+.+.++.   .+..+
T Consensus       341 ~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw  420 (498)
T KOG4328|consen  341 ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW  420 (498)
T ss_pred             cccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc
Confidence            9999999999998632    2233347999999999999754455554 5569999973    222222221   12223


Q ss_pred             EEE--EEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         416 INS--ICVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       416 v~~--l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .+-  ..+.|+. +++.|-.-..|-|+|-..|+.+
T Consensus       421 lT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v  455 (498)
T KOG4328|consen  421 LTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMV  455 (498)
T ss_pred             ccchhheeCCCccEEEEeccCcceeEEcCCCCEEe
Confidence            333  3677877 8899999999999998877644

>KOG2048|consensus

Probab=99.74  E-value=1.1e-15  Score=146.26  Aligned_cols=204  Identities=23%  Similarity=0.320  Sum_probs=160.2

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE-EEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK-LSLTGHV-GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~-~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      ...|.+++++.+.+.||.+-.||.|.||++..+-+. ..+.++. ..|.+++|++.+ .|++.+-+|+|.-||+.+.+..
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~  103 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQK  103 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCcee
Confidence            467999999999999999999999999999987553 4566665 479999999554 6789999999999999876654


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEEccCCCc
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTLTNHKKS  374 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~h~~~  374 (479)
                      ...  ....+.|++++.+|.+..+++++.||.+..++                         ...++.  ...|...++.
T Consensus       104 ~~~--d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s-------------------------~~p~~I~~~r~l~rq~sR  156 (691)
T KOG2048|consen  104 YNI--DSNGGAIWSIAINPENTILAIGCDDGVLYDFS-------------------------IGPDKITYKRSLMRQKSR  156 (691)
T ss_pred             EEe--cCCCcceeEEEeCCccceEEeecCCceEEEEe-------------------------cCCceEEEEeecccccce
Confidence            432  22356799999999888888777777444333                         222222  1234445688


Q ss_pred             eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-------ec-CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895         375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-------LP-GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-------~~-~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~  445 (479)
                      |-+++|+|++..+++|+.|. |++||..++..++.       +. +....|+++.+-.++.|++|.+-|+|++||...|.
T Consensus       157 vLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT  236 (691)
T KOG2048|consen  157 VLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT  236 (691)
T ss_pred             EEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc
Confidence            99999999999899999887 99999999877662       11 24457999999999999999999999999999997


Q ss_pred             EEEEE
Q psy8895         446 NFQRL  450 (479)
Q Consensus       446 ~~~~~  450 (479)
                      .+++.
T Consensus       237 LiqS~  241 (691)
T KOG2048|consen  237 LIQSH  241 (691)
T ss_pred             hhhhh
Confidence            76664

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.73  E-value=3.4e-14  Score=139.84  Aligned_cols=207  Identities=38%  Similarity=0.634  Sum_probs=153.7

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEE
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWD  289 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd  289 (479)
                      ...+.+|...|.+++|+|+++++++++. |+.+++|++..+.....+.+|...|.+++++|++. .+++++.|+.+++||
T Consensus       148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd  227 (466)
T COG2319         148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD  227 (466)
T ss_pred             EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence            3456789999999999999999999885 99999999999888889999999999999999998 555559999999998


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EEEE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LCTL  368 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~~~  368 (479)
                      .......... ...+.... ...|.+++                         ..+++++.|+.+++||+..... +..+
T Consensus       228 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~-------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~  280 (466)
T COG2319         228 LSTGKLLRST-LSGHSDSV-VSSFSPDG-------------------------SLLASGSSDGTIRLWDLRSSSSLLRTL  280 (466)
T ss_pred             CCCCcEEeee-cCCCCcce-eEeECCCC-------------------------CEEEEecCCCcEEEeeecCCCcEEEEE
Confidence            7633322210 01111111 11344443                         2345677788888888876554 4444


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec--CCcceEEEEEEcCC-CEEEEE-eCCCcEEEEecCC
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP--GHNAIINSICVNNE-GVLVSG-ADNGTMCFWDWRT  443 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~-~~l~sg-~~dg~i~lWd~~~  443 (479)
                      .+|...+.++.|+|++..+++++.+. +.+|+..+........  .|...+..+.+.++ ..++.+ ..|+.+.+|+...
T Consensus       281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  360 (466)
T COG2319         281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRT  360 (466)
T ss_pred             ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCC
Confidence            67889999999999777776666554 8999988887766665  78888888888544 345544 6889999999988


Q ss_pred             Ce
Q psy8895         444 GY  445 (479)
Q Consensus       444 ~~  445 (479)
                      ..
T Consensus       361 ~~  362 (466)
T COG2319         361 GK  362 (466)
T ss_pred             Cc
Confidence            76

>KOG4378|consensus

Probab=99.73  E-value=1.1e-16  Score=147.54  Aligned_cols=213  Identities=19%  Similarity=0.300  Sum_probs=163.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      .|++......++++|+..+.|+|||++...+...+..|...|++|.++-...++++++..|.|.+-.+.++...... ..
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f-~~  161 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTF-TI  161 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccce-ec
Confidence            45555555689999999999999999977777788999999999999999999999999999999988765543322 12


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE-EccCCCceEEEEEe
Q psy8895         303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKKSVRSVALH  381 (479)
Q Consensus       303 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~~v~~i~~~  381 (479)
                      +....+.-+.|++..+.+                        |.+++.+|.|.+||+....++.. .+.|..+...|+|+
T Consensus       162 ~sgqsvRll~ys~skr~l------------------------L~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfs  217 (673)
T KOG4378|consen  162 DSGQSVRLLRYSPSKRFL------------------------LSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFS  217 (673)
T ss_pred             CCCCeEEEeeccccccee------------------------eEeeccCCeEEEEeccCCCcccchhhhccCCcCcceec
Confidence            223334566676655443                        56788899999999988777665 45799999999999


Q ss_pred             CC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC-CCeEEEEE-----EE
Q psy8895         382 PT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR-TGYNFQRL-----QV  452 (479)
Q Consensus       382 ~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~-~~~~~~~~-----~~  452 (479)
                      |. ..+|++.+.| +|.+||.........+.. ..+.+.++|.++| +|+.|...|.|..||++ +..++..+     .+
T Consensus       218 psne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sV  296 (673)
T KOG4378|consen  218 PSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASV  296 (673)
T ss_pred             CCccceEEEecccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccce
Confidence            96 4677887777 599999987666655543 3367889999999 89999999999999998 44555443     34


Q ss_pred             eEecCCCCC
Q psy8895         453 RCVSGFPKP  461 (479)
Q Consensus       453 ~~~~~~~~~  461 (479)
                      .|++..|.+
T Consensus       297 t~vafq~s~  305 (673)
T KOG4378|consen  297 TRVAFQPSP  305 (673)
T ss_pred             eEEEeeecc
Confidence            455555554

>KOG0639|consensus

Probab=99.72  E-value=1.6e-16  Score=146.55  Aligned_cols=228  Identities=18%  Similarity=0.287  Sum_probs=175.7

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG---KLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~---~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      .|.+.|.+++++...+.+++|+. |-|+|||+...   ..+..+.  .-..-|+++.+.|||+.|++||.-.++.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            58888888999999999999986 56999999643   2222222  234579999999999999999999999999997


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcE
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTI  354 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v  354 (479)
                      .....+..-.....-.++.++.+|+.+..++++.||.|.+||+.+..                 ..++..|-||+-|++|
T Consensus       496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv  575 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV  575 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence            65433221111122346678889999999999999999999987642                 1245668899999999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                      |.||+++++.+... ...+.|.++..+|.+..++.+-.+. +.+-.. ++...+.+.-|...|.+|.|.+-| ++++.+.
T Consensus       576 RcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  576 RCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             eehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCc
Confidence            99999988765432 1246799999999999998887764 655443 445566777899999999999988 9999999


Q ss_pred             CCcEEEEecCCCeEE
Q psy8895         433 NGTMCFWDWRTGYNF  447 (479)
Q Consensus       433 dg~i~lWd~~~~~~~  447 (479)
                      |..+..|...-|..+
T Consensus       654 DnlLnawrtPyGasi  668 (705)
T KOG0639|consen  654 DNLLNAWRTPYGASI  668 (705)
T ss_pred             hhhhhhccCccccce
Confidence            999999986655443

>KOG0303|consensus

Probab=99.71  E-value=1.2e-15  Score=137.12  Aligned_cols=168  Identities=17%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             EecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .|.||...|--++|+|. .+.|+|++.|++|.+|++.+|..+.++. |.+.|.+++|+.||.+++|.+.|+.||+||.++
T Consensus       126 ~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~  204 (472)
T KOG0303|consen  126 ELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR  204 (472)
T ss_pred             EEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC
Confidence            46789999999999985 4689999999999999999999988888 999999999999999999999999999999988


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCCC-------------------CCC-eEEEEe
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTE---ADKTVKLYKEDDSATE-------------------ESH-PVITGS  349 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~~-------------------~~~-~l~sgs  349 (479)
                      +........ .....-..+.|-.++..+.+|-   .+..+-+|+..+...+                   +.. ..+.|-
T Consensus       205 ~~~v~e~~~-heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK  283 (472)
T KOG0303|consen  205 GTVVSEGVA-HEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK  283 (472)
T ss_pred             CcEeeeccc-ccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec
Confidence            765543311 1223344566777777555543   4556888887654321                   112 245777


Q ss_pred             CCCcEEEEECCCCee-EEEEcc--CCCceEEEEEeCC
Q psy8895         350 HDCTIRLWDLAAGKS-LCTLTN--HKKSVRSVALHPT  383 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~-~~~~~~--h~~~v~~i~~~~~  383 (479)
                      .|+.||.|.+....+ ++-+..  ...+=+.+.|-|.
T Consensus       284 GD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  284 GDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             CCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            899999999887654 222221  1223355666554

>KOG0322|consensus

Probab=99.71  E-value=2.4e-16  Score=134.33  Aligned_cols=229  Identities=17%  Similarity=0.231  Sum_probs=155.4

Q ss_pred             eEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      ++..+++|.+.|+|+.|..++ +|.+|..-|.|++|++.+.+....++ .|...|+.+..-|+ ..+.+-+.|..+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            345778999999999998665 59999999999999999998888888 55678999988887 4677889999999999


Q ss_pred             CCCCCcccC--------------C-------------CC------------------------CCCCCCeEEEEEeC-CC
Q psy8895         290 LEYNKAPVQ--------------P-------------GS------------------------MDSESGIFSMTFDN-SG  317 (479)
Q Consensus       290 ~~~~~~~~~--------------~-------------~~------------------------~~~~~~i~~~~~~~-~~  317 (479)
                      +........              .             ..                        ....+.+.+..+.. .+
T Consensus        84 ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~  163 (323)
T KOG0322|consen   84 IAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG  163 (323)
T ss_pred             ccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence            865221100              0             00                        00011122222111 11


Q ss_pred             --CEEEEEeCCCeEEEEeCCCCCC---------------CCCC------------eEEEEeCCCcEEEEECCCC--ee--
Q psy8895         318 --SRLITTEADKTVKLYKEDDSAT---------------EESH------------PVITGSHDCTIRLWDLAAG--KS--  364 (479)
Q Consensus       318 --~~l~~~~~d~~i~~~~~~~~~~---------------~~~~------------~l~sgs~d~~v~iwd~~~~--~~--  364 (479)
                        -.++.|..+|.+.+||......               ...+            .=++|+.+..+..|++.-.  ..  
T Consensus       164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~  243 (323)
T KOG0322|consen  164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI  243 (323)
T ss_pred             ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence              1344555666666666544200               0000            1134444445555555422  10  


Q ss_pred             EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         365 LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      ...++-....|..+.+-||++++|+++-| .|++|...+...+-.++.|++.|++++|+|+. .+|++|.|++|.+|++
T Consensus       244 ~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  244 RKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            01111112346778888999999999877 59999999999999999999999999999995 9999999999999985

>KOG0644|consensus

Probab=99.71  E-value=2.8e-17  Score=160.00  Aligned_cols=227  Identities=20%  Similarity=0.387  Sum_probs=178.0

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +.+.||...|+|+.|...|.++++|+.|..++||.+.++.+.....||.+.|+.++.+.+..+++++|.|..|++|.+..
T Consensus       184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~  263 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD  263 (1113)
T ss_pred             HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC
Confidence            34679999999999999999999999999999999999999999999999999999999998999999999999999987


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEeCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGSHD  351 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs~d  351 (479)
                      +.++...  .++++.|.+++|+|-.    +.+.||++++||.+-...                     .....++||+.|
T Consensus       264 ~~pvsvL--rghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d  337 (1113)
T KOG0644|consen  264 GAPVSVL--RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRD  337 (1113)
T ss_pred             CchHHHH--hccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCC
Confidence            6654322  4678899999999964    778999999999762100                     112346788888


Q ss_pred             CcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EE
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VL  427 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l  427 (479)
                      ++.+.|.+...      ..+...+.-+.++.+. .+.+++-.+ .+++|+..+|.+.+.+.+|...+..|.+.|-+  ..
T Consensus       338 ~ea~n~e~~~l------~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  338 GEARNHEFEQL------AWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             cccccchhhHh------hhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence            88888765531      1122222222222222 223333333 48999999999999999999999999998765  56


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         428 VSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .+++.||+..|||+..|-+.+.+.
T Consensus       412 msag~dgst~iwdi~eg~pik~y~  435 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDIWEGIPIKHYF  435 (1113)
T ss_pred             hhccCCCceEeeecccCCcceeee
Confidence            799999999999999998877665

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.70  E-value=2.4e-13  Score=133.77  Aligned_cols=311  Identities=33%  Similarity=0.567  Sum_probs=220.0

Q ss_pred             eecCCcc-cceEEEEE-ccCCc-eEEEecC-CCeEEEEeecc-cceEeeecccccceEEEEecCCCCccccceEEecccc
Q psy8895          27 RHYHGHL-SSVNTISL-HPTID-VLITAGR-DSTARVWDVRT-KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCE  101 (479)
Q Consensus        27 ~~~~gH~-~~V~~l~~-sp~g~-~laSgs~-D~~vriWd~~t-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  101 (479)
                      ..+.++. ..+..+.+ ++++. .++..+. |+.+++||..+ ......+.+|...+..+.|.+....            
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------  169 (466)
T COG2319         102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL------------  169 (466)
T ss_pred             EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCE------------
Confidence            3344433 37777777 88887 5555455 99999999998 7788889999998888887665421            


Q ss_pred             EEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895         102 RIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP  181 (479)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  181 (479)
                         ++.+.           ..++.++.|+...                                                
T Consensus       170 ---~~~~~-----------~~~~~~~~~~~~~------------------------------------------------  187 (466)
T COG2319         170 ---LASGS-----------SLDGTIKLWDLRT------------------------------------------------  187 (466)
T ss_pred             ---EEecC-----------CCCCceEEEEcCC------------------------------------------------
Confidence               00000           0123344443210                                                


Q ss_pred             CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEE-EEec
Q psy8895         182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKL-SLTG  259 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~-~~~~  259 (479)
                                                 .+....+.+|...|.+++++|++. .+++++.|+.|++||...+.... .+.+
T Consensus       188 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~  240 (466)
T COG2319         188 ---------------------------GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG  240 (466)
T ss_pred             ---------------------------CceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC
Confidence                                       011234556899999999999998 56666999999999999888877 6888


Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       260 h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      |.... ...|++++..+++++.|+.+++||...... ....  ..+...+.++.+.|++..+++++.|+.+.+|+.....
T Consensus       241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  317 (466)
T COG2319         241 HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK  317 (466)
T ss_pred             CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence            88775 448999998888999999999999976543 1111  2346788999999988888888888889999764321


Q ss_pred             C--------CC-----------CCeEEEE-eCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEE-EcCC-cEE
Q psy8895         339 T--------EE-----------SHPVITG-SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFAS-ASPD-NIK  396 (479)
Q Consensus       339 ~--------~~-----------~~~l~sg-s~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s-~s~d-~i~  396 (479)
                      .        ..           ...++.+ ..|+.+++|++............ ..+..+.+++ ...+.+ ...+ .+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~  395 (466)
T COG2319         318 LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTVR  395 (466)
T ss_pred             eEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEecCCCceE
Confidence            0        00           0234444 67889999999887733333322 2288899988 544444 3444 599


Q ss_pred             EEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         397 QWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       397 ~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      +|+............+...+....+++++ .+++++.++.+++|+..+
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         396 LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             EEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            99998888777666654667777888888 788889999999999988

>KOG2919|consensus

Probab=99.70  E-value=6.1e-16  Score=135.54  Aligned_cols=194  Identities=25%  Similarity=0.406  Sum_probs=145.5

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEecC--Cc---CEEEEEEcCCCCEEEEEECCCcEEEEECC-CCCc-c----c
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGH--VG---SVRGLTVSPRHPYLFSCGDDRTVKCWDLE-YNKA-P----V  297 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h--~~---~v~~v~~~~~~~~l~s~~~d~~i~~wd~~-~~~~-~----~  297 (479)
                      |+..++++.+.+.-|.+||.-+|+....+.+.  .+   ...+++|+|||..|+. |..+.|++||+. .++. .    .
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhh
Confidence            77889999999999999999999988777653  33   3469999999999875 577899999983 3321 1    1


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ........+-+.+++|+|...                        ..++.|+...++-|++-..+.++..+-+|.+.|+.
T Consensus       200 ~~~k~gq~giisc~a~sP~~~------------------------~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvTh  255 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPMDS------------------------KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTH  255 (406)
T ss_pred             hcccccccceeeeeeccCCCC------------------------cceeeecccceeeeEecCCCCceeeecccCCCeee
Confidence            111223345677888888644                        22455555566666666667888899899999999


Q ss_pred             EEEeCCCcEEEEEcC--CcEEEEeCCC-CeEEeeecCCcc-eEEEEEE--cCCC-EEEEEeCCCcEEEEecCC-CeEE
Q psy8895         378 VALHPTLYMFASASP--DNIKQWKCPE-GKFIQNLPGHNA-IINSICV--NNEG-VLVSGADNGTMCFWDWRT-GYNF  447 (479)
Q Consensus       378 i~~~~~~~~l~s~s~--d~i~~w~~~~-~~~~~~~~~h~~-~v~~l~~--~~~~-~l~sg~~dg~i~lWd~~~-~~~~  447 (479)
                      +.|.+++..|.+++.  +.|..||+.. ...+..|..|.+ .-..+.|  .|.+ +|++|+.||.|++||+++ |...
T Consensus       256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            999999988888874  4699999964 456777888866 4445555  4666 899999999999999997 6533

>KOG1963|consensus

Probab=99.70  E-value=7.7e-14  Score=137.68  Aligned_cols=225  Identities=22%  Similarity=0.325  Sum_probs=158.2

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--C--ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--G--KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .|...++|.+++|.+.++|+|..||.|.+|.--.  .  .....+.=|..+|.+++|+++|.+|++||..+.+-+|.+++
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T  282 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET  282 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence            4777899999999999999999999999996432  1  12234556889999999999999999999999999999988


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------------------C----
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------------------E----  340 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------------------~----  340 (479)
                      ++.....   .-.+.|..+.++|++...+....|+.|.+....+.+.                            +    
T Consensus       283 ~~kqfLP---RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  283 GKKQFLP---RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             CCccccc---ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            7643321   2346789999999999999888899888775421100                            0    


Q ss_pred             -------------------------------------------------CCCeEEEE--------eCCC--cEEEEECCC
Q psy8895         341 -------------------------------------------------ESHPVITG--------SHDC--TIRLWDLAA  361 (479)
Q Consensus       341 -------------------------------------------------~~~~l~sg--------s~d~--~v~iwd~~~  361 (479)
                                                                       ....++|+        ..||  .+++|-...
T Consensus       360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~  439 (792)
T KOG1963|consen  360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP  439 (792)
T ss_pred             eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence                                                             00012221        2233  345665544


Q ss_pred             CeeEEE-----EccCCCceEEEEEeCC-C-cEEEEEcCCc-EEEEeCCCCe----------EEeeecCCcceEEEEEEcC
Q psy8895         362 GKSLCT-----LTNHKKSVRSVALHPT-L-YMFASASPDN-IKQWKCPEGK----------FIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       362 ~~~~~~-----~~~h~~~v~~i~~~~~-~-~~l~s~s~d~-i~~w~~~~~~----------~~~~~~~h~~~v~~l~~~~  423 (479)
                      ...-..     -..|+..+.+.++.+. . ..+++++.|. +++|-+..-+          +...-..|+..+++++|+.
T Consensus       440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~  519 (792)
T KOG1963|consen  440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ  519 (792)
T ss_pred             CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence            322111     1357777766666543 2 3777887665 9999873221          1212224788999999999


Q ss_pred             CCEEEEEeCCCcEEEEecCCC
Q psy8895         424 EGVLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       424 ~~~l~sg~~dg~i~lWd~~~~  444 (479)
                      ||.+++.+.|++|.+||..+.
T Consensus       520 dGslla~s~~~~Itiwd~~~~  540 (792)
T KOG1963|consen  520 DGSLLAVSFDDTITIWDYDTK  540 (792)
T ss_pred             CCcEEEEecCCEEEEecCCCh
Confidence            998888999999999999883

>KOG1034|consensus

Probab=99.66  E-value=1.9e-14  Score=126.63  Aligned_cols=226  Identities=19%  Similarity=0.331  Sum_probs=171.2

Q ss_pred             CCccEEEEEEcCC----CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCC
Q psy8895         218 HLGWVRCVAVEPG----NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       218 h~~~v~~~~~~~~----g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~  292 (479)
                      |.+....+++.-+    ..++|.|+.-|.|+|-|+.++++...+.+|..+|+.+.++|+. ++++++|.|.+||+|++++
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~  167 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT  167 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence            4555566666432    3578999999999999999999999999999999999999986 4778999999999999998


Q ss_pred             CCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------C-----
Q psy8895         293 NKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------E-----  340 (479)
Q Consensus       293 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~-----  340 (479)
                      ..+.... +..++...|.++.|++++.++++++-|.++++|++.....                          +     
T Consensus       168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~  247 (385)
T KOG1034|consen  168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT  247 (385)
T ss_pred             CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence            8876543 3345778899999999999999999999999999762100                          0     


Q ss_pred             ------------CCCeEEEEeCCCcEEEEECC-CCe-------------eEEEEccCCCceEEEEE--eCCCcEEEEEcC
Q psy8895         341 ------------ESHPVITGSHDCTIRLWDLA-AGK-------------SLCTLTNHKKSVRSVAL--HPTLYMFASASP  392 (479)
Q Consensus       341 ------------~~~~l~sgs~d~~v~iwd~~-~~~-------------~~~~~~~h~~~v~~i~~--~~~~~~l~s~s~  392 (479)
                                  ....+++-|-++.|..|--. -.+             .+.+++.....|+-+.|  +|-..+||.+.+
T Consensus       248 diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq  327 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ  327 (385)
T ss_pred             ccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence                        01247888889999999761 111             12334444455666655  455778888776


Q ss_pred             C-cEEEEeCCCCeEE--eeec--CCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         393 D-NIKQWKCPEGKFI--QNLP--GHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       393 d-~i~~w~~~~~~~~--~~~~--~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      . .+.+||+...+..  .++.  -....|...+|+.|+ .|+...+|++|--||..+
T Consensus       328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv~  384 (385)
T KOG1034|consen  328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRVS  384 (385)
T ss_pred             CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEeec
Confidence            6 5999999776552  1222  234578999999999 888889999999999653

>KOG1274|consensus

Probab=99.65  E-value=3.7e-14  Score=140.27  Aligned_cols=206  Identities=16%  Similarity=0.239  Sum_probs=159.0

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      ..|+..-+.+++.|+|++|.+++.|+.|++|+..+- .....+.-+...|.+++..  +..+++|+.+++|.++.+....
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            368888999999999999999999999999997655 3333444366677777664  4489999999999999886654


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                      ......  ...-++.+++++.+|+.++.|+                         .|-.|++-++........+.+|+.+
T Consensus        88 ~~~iL~--Rftlp~r~~~v~g~g~~iaags-------------------------dD~~vK~~~~~D~s~~~~lrgh~ap  140 (933)
T KOG1274|consen   88 EDTILA--RFTLPIRDLAVSGSGKMIAAGS-------------------------DDTAVKLLNLDDSSQEKVLRGHDAP  140 (933)
T ss_pred             ccceee--eeeccceEEEEecCCcEEEeec-------------------------CceeEEEEeccccchheeecccCCc
Confidence            321111  1123577888888877765554                         4555666666666677788999999


Q ss_pred             eEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC--------cceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         375 VRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH--------NAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h--------~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      |.++.|+|.+.+||+.+-| .+.+|++.++.+.+++.+-        ...+..++++|++ .++....|+.|++|+..+.
T Consensus       141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w  220 (933)
T KOG1274|consen  141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW  220 (933)
T ss_pred             eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence            9999999999999988866 5999999999888777542        3456788999996 8888999999999999887


Q ss_pred             eEEEEE
Q psy8895         445 YNFQRL  450 (479)
Q Consensus       445 ~~~~~~  450 (479)
                      +....+
T Consensus       221 e~~f~L  226 (933)
T KOG1274|consen  221 ELQFKL  226 (933)
T ss_pred             eeheee
Confidence            766554

>KOG1334|consensus

Probab=99.64  E-value=1.5e-15  Score=140.03  Aligned_cols=313  Identities=20%  Similarity=0.280  Sum_probs=208.3

Q ss_pred             eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeec-ccccceEEEEecCCCCccccceEEecccc
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT-GHTNTIASVVTQASEPQVGTKTVLLESCE  101 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~  101 (479)
                      +.+-..+.+|.++|+.|.|...|..|+|||.|..|-+||..+++....+. ||...|....|.+-...   .++      
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d---~ti------  202 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD---RTI------  202 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC---cCc------
Confidence            44566788999999999999999999999999999999999888877664 67666554444332110   000      


Q ss_pred             EEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895         102 RIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP  181 (479)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  181 (479)
                         ...             ..+|.++.-.                                                +..
T Consensus       203 ---~~~-------------s~dgqvr~s~------------------------------------------------i~~  218 (559)
T KOG1334|consen  203 ---VTS-------------SRDGQVRVSE------------------------------------------------ILE  218 (559)
T ss_pred             ---eec-------------cccCceeeee------------------------------------------------ecc
Confidence               000             0111111000                                                000


Q ss_pred             CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEE---
Q psy8895         182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSL---  257 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~---  257 (479)
                      ...                        ..-.+.+..|.+.|.-++..|+. .-|.|++.|+.+.=.|++.+.....+   
T Consensus       219 t~~------------------------~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  219 TGY------------------------VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             ccc------------------------eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee
Confidence            000                        00012345689999999998865 56999999999999999877543222   


Q ss_pred             ecCCc---CEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcc-----cCCCC-----CCCCCCeEEEEEeCCCCEEEEE
Q psy8895         258 TGHVG---SVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAP-----VQPGS-----MDSESGIFSMTFDNSGSRLITT  323 (479)
Q Consensus       258 ~~h~~---~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~-----~~~~~-----~~~~~~i~~~~~~~~~~~l~~~  323 (479)
                      ..+..   ...+++..|... .+++++.|-.+++||.+.-...     .....     ......|.+++|+.++.-+.++
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence            22333   356788888766 6788999999999998642211     00000     0234568999999888878888


Q ss_pred             eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE-EccCCC--ceEEEEE-eCCCcEEEEEcCCc-EEEE
Q psy8895         324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKK--SVRSVAL-HPTLYMFASASPDN-IKQW  398 (479)
Q Consensus       324 ~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~--~v~~i~~-~~~~~~l~s~s~d~-i~~w  398 (479)
                      ..|.-|.+|......-.....+       .+     + ...++. +++|..  .|..+-| -|...++++||+.+ |.+|
T Consensus       355 YnDe~IYLF~~~~~~G~~p~~~-------s~-----~-~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW  421 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGSEPDPS-------SP-----R-EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIW  421 (559)
T ss_pred             ecccceEEeccccccCCCCCCC-------cc-----h-hhccchhhcccccccccceeeeccCccceEEecCccceEEEE
Confidence            8888888884332211110000       00     0 112222 677864  3555544 57788999999875 9999


Q ss_pred             eCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         399 KCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       399 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      +-.+++.+..|.+-+..|+||--.|-- .||+.+-|.-|+||.-.+.+
T Consensus       422 ~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  422 DKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             ecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCCccc
Confidence            999999999999977799999877765 99999999999999875543

>KOG1310|consensus

Probab=99.63  E-value=4.6e-15  Score=138.60  Aligned_cols=249  Identities=19%  Similarity=0.258  Sum_probs=162.6

Q ss_pred             ecccceeEeeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccc
Q psy8895          14 TGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTK   93 (479)
Q Consensus        14 ~g~~~~v~~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~   93 (479)
                      .+|+.-++.|.+-..+.||+++|+||.|+.+|.+|||||.|-.+.|||.-..+.++.                       
T Consensus        31 ~~~s~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-----------------------   87 (758)
T KOG1310|consen   31 MGNSTWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-----------------------   87 (758)
T ss_pred             ccccHHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeee-----------------------
Confidence            377777888888888999999999999999999999999999999999743322211                       


Q ss_pred             eEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccc
Q psy8895          94 TVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVP  173 (479)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (479)
                                                                                                      
T Consensus        88 --------------------------------------------------------------------------------   87 (758)
T KOG1310|consen   88 --------------------------------------------------------------------------------   87 (758)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCC
Q psy8895         174 STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATG  251 (479)
Q Consensus       174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~  251 (479)
                                                              +-.||...|.|+.|-|  +.+.++||..|..|+++|+...
T Consensus        88 ----------------------------------------I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~  127 (758)
T KOG1310|consen   88 ----------------------------------------ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS  127 (758)
T ss_pred             ----------------------------------------eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence                                                    1136888889999987  4568999999999999999742


Q ss_pred             ----------ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCC-cccCC-------CCCCCCCCeEEEE
Q psy8895         252 ----------KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEYNK-APVQP-------GSMDSESGIFSMT  312 (479)
Q Consensus       252 ----------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~~~-~~~~~-------~~~~~~~~i~~~~  312 (479)
                                .....+..|...|.-++..|++ ..+.++++||+|+-+|++... +....       ......-...++.
T Consensus       128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt  207 (758)
T KOG1310|consen  128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT  207 (758)
T ss_pred             cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence                      2234567788999999999998 467799999999999997521 11000       0000112345677


Q ss_pred             EeCCC-CEEEEEeCCCeEEEEeCCCCCCC-CCCeE-EEE--eCCCcEEEEECCCCeeE-EEEccCCCceEEEEEeCCCc-
Q psy8895         313 FDNSG-SRLITTEADKTVKLYKEDDSATE-ESHPV-ITG--SHDCTIRLWDLAAGKSL-CTLTNHKKSVRSVALHPTLY-  385 (479)
Q Consensus       313 ~~~~~-~~l~~~~~d~~i~~~~~~~~~~~-~~~~l-~sg--s~d~~v~iwd~~~~~~~-~~~~~h~~~v~~i~~~~~~~-  385 (479)
                      .+|.. .++++|+.+--.++||.+..... .+... -++  -.++-|+.|...--+.. ..+..--..++-+.|+|+|. 
T Consensus       208 isp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtE  287 (758)
T KOG1310|consen  208 ISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTE  287 (758)
T ss_pred             ecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcE
Confidence            77754 46788888888888884322111 00000 000  01122333321110000 00000011357788999975 


Q ss_pred             EEEEEcCCcEEEEeCCCCeE
Q psy8895         386 MFASASPDNIKQWKCPEGKF  405 (479)
Q Consensus       386 ~l~s~s~d~i~~w~~~~~~~  405 (479)
                      +|++-+.+.|.++|+..++.
T Consensus       288 lLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  288 LLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             EEEeeCCeEEEEEeecCCCC
Confidence            55555666799999987764

>KOG2919|consensus

Probab=99.63  E-value=4.1e-14  Score=124.25  Aligned_cols=157  Identities=27%  Similarity=0.496  Sum_probs=119.8

Q ss_pred             CCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~  294 (479)
                      +..+-+.|++|+|- .+.++.|+....+-|+.-..+..+..+.+|.+.|+.+.|.++|..|.+|+ .|-.|..||++..+
T Consensus       205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            45677899999994 56899999999999999888899999999999999999999999999986 47789999998655


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEEEEccCCC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLCTLTNHKK  373 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~  373 (479)
                      .++-..... ..        ...+++          +||++    +.+..|++|+.||.|++||++. +..+..+..|..
T Consensus       285 ~pv~~L~rh-v~--------~TNQRI----------~FDld----~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd  341 (406)
T KOG2919|consen  285 DPVYALERH-VG--------DTNQRI----------LFDLD----PKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD  341 (406)
T ss_pred             chhhhhhhh-cc--------CccceE----------EEecC----CCCceeeccCCCccEEEEecCCCCCcccccccccc
Confidence            432110000 00        000111          22222    2345678888999999999988 676777778899


Q ss_pred             ceEEEEEeCCCcEEEEEcCCcEE
Q psy8895         374 SVRSVALHPTLYMFASASPDNIK  396 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~i~  396 (479)
                      .++.++++|-.+++++++...+.
T Consensus       342 ~vNgvslnP~mpilatssGqr~f  364 (406)
T KOG2919|consen  342 TVNGVSLNPIMPILATSSGQRIF  364 (406)
T ss_pred             cccceecCcccceeeeccCceee
Confidence            99999999999999998877543

>KOG1538|consensus

Probab=99.63  E-value=5.7e-14  Score=134.16  Aligned_cols=201  Identities=12%  Similarity=0.169  Sum_probs=127.3

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      .|++.|.|+.|+|-...|+|++-.. .-+|........+  ......+.+.+|..||.+++.|-.||+|.+=+-...+..
T Consensus        91 SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   91 SHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             ccCCeeeEeecCchHHHhhhcchhh-ccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            6777777777777777777776543 3466544332211  112345666677777777777777777777643332333


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceE
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVR  376 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~  376 (479)
                      ......+.++.|+++.|+|...       .|             ....++...+..++.++.+.. +.+..-+...-.-.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg-------~G-------------~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~FdP~  226 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSG-------EG-------------RNDILAVADWGQTLSFYQLSG-KQIGKDRALNFDPC  226 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCC-------CC-------------ccceEEEEeccceeEEEEecc-eeecccccCCCCch
Confidence            3333444566777777776432       01             113456666777777777653 33321111222335


Q ss_pred             EEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         377 SVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       377 ~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      ++.+-++|.++..|+.+ .+.++.. .|.++.++..-..+|+.+...|++ .++.|..||+|-.|++.
T Consensus       227 CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  227 CISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             hheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence            77777887666555544 5777764 677788877777799999999999 88899999999999975

>KOG1007|consensus

Probab=99.62  E-value=2.2e-14  Score=123.97  Aligned_cols=204  Identities=22%  Similarity=0.349  Sum_probs=143.5

Q ss_pred             EecCCCccEEEEEEcCCC-cEEEEEeCC-------CeEEEEECCCC---------ceEEEEe-cCCcCEEEEEEcCCCCE
Q psy8895         214 VISGHLGWVRCVAVEPGN-EWFATGSAD-------KIIKVWDLATG---------KLKLSLT-GHVGSVRGLTVSPRHPY  275 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g-~~l~sgs~d-------~~i~iWd~~~~---------~~~~~~~-~h~~~v~~v~~~~~~~~  275 (479)
                      .|.-|.+.|..++-+|-. ..|++.-.+       ..+-||.+...         +++..+. .+-+.|.|+.|.|++..
T Consensus        58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k  137 (370)
T KOG1007|consen   58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK  137 (370)
T ss_pred             hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence            345678889998888854 445554432       24679988532         1222333 34568999999999999


Q ss_pred             EEEEECCCcEEEEECCCCCcccC-C---CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC
Q psy8895         276 LFSCGDDRTVKCWDLEYNKAPVQ-P---GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD  351 (479)
Q Consensus       276 l~s~~~d~~i~~wd~~~~~~~~~-~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d  351 (479)
                      +++.. |..|.+|+++....... .   ...+......+-+|+|..                       +.+ .+....|
T Consensus       138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH-----------------------dgn-qv~tt~d  192 (370)
T KOG1007|consen  138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH-----------------------DGN-QVATTSD  192 (370)
T ss_pred             eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC-----------------------ccc-eEEEeCC
Confidence            88764 88999999976543211 1   011112233344444411                       112 2333468


Q ss_pred             CcEEEEECCCCeeEEEEc-cCCCceEEEEEeCCCc-EEEEEcCCc-EEEEeCCCC-eEEeeecCCcceEEEEEEcCCC--
Q psy8895         352 CTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLY-MFASASPDN-IKQWKCPEG-KFIQNLPGHNAIINSICVNNEG--  425 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~-~l~s~s~d~-i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~~--  425 (479)
                      +++..||+++.+....+. .|...|+.+.|+|+.+ +|+++++|. +++||.... ..++.+.+|.-+|+++.|+|..  
T Consensus       193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce
Confidence            899999999988877765 5888999999999864 677888775 999998654 5689999999999999999755  


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy8895         426 VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~  442 (479)
                      .++|||.|..|.+|...
T Consensus       273 LiLs~~SDs~V~Lsca~  289 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCAS  289 (370)
T ss_pred             EEEecCCCceeEEEecc
Confidence            88999999999999865

>KOG0649|consensus

Probab=99.61  E-value=1.1e-12  Score=110.96  Aligned_cols=187  Identities=15%  Similarity=0.230  Sum_probs=123.0

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .|.++.+.|..+-++.++.|+.+.-||+++|+...+++||++-|.++.--.....+++|++||++|+||.++.++.....
T Consensus       116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            47788889888778888899999999999999999999999999999986666688999999999999998877643221


Q ss_pred             CCCCC--------CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         301 SMDSE--------SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       301 ~~~~~--------~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ...+.        ..|-+++  .+..                         .++. +..-.+.+|.++..++..++. -.
T Consensus       196 ~yk~~~~lRp~~g~wigala--~~ed-------------------------WlvC-GgGp~lslwhLrsse~t~vfp-ip  246 (325)
T KOG0649|consen  196 PYKNPNLLRPDWGKWIGALA--VNED-------------------------WLVC-GGGPKLSLWHLRSSESTCVFP-IP  246 (325)
T ss_pred             cccChhhcCcccCceeEEEe--ccCc-------------------------eEEe-cCCCceeEEeccCCCceEEEe-cc
Confidence            11111        1122221  1122                         2333 334568899999988888875 34


Q ss_pred             CceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEc--CCCEEEEEeCCCcEEEE
Q psy8895         373 KSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVN--NEGVLVSGADNGTMCFW  439 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~--~~~~l~sg~~dg~i~lW  439 (479)
                      ..+..+.|..+  ++.+++.+ .+..|.+ +|.+.-..+.......+..++  |-.+|-.++...++.+.
T Consensus       247 a~v~~v~F~~d--~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  247 ARVHLVDFVDD--CVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             cceeEeeeecc--eEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            56788888654  34445544 4888876 355544444433334444433  32244444544555443

>KOG0649|consensus

Probab=99.60  E-value=2.6e-13  Score=114.74  Aligned_cols=199  Identities=21%  Similarity=0.302  Sum_probs=139.0

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCC---------C-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLAT---------G-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~---------~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      |.+-+++|.+++|+.|+.+|.|-+..+++         + ..+...++|.++|..++|..+  +|++|+. |.|+-|..+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~--~Lls~gd-G~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD--FLLSGGD-GLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh--heeeccC-ceEEEeeeh
Confidence            44557889999999999999999998853         2 234566899999999999844  6777755 999999875


Q ss_pred             CCCcc---cCCCCCC--------CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         292 YNKAP---VQPGSMD--------SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       292 ~~~~~---~~~~~~~--------~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      .....   .......        .--.|.++..+|..+                         .++.++.|+.++-||++
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-------------------------Si~~AgGD~~~y~~dlE  144 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-------------------------SILFAGGDGVIYQVDLE  144 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-------------------------cEEEecCCeEEEEEEec
Confidence            32210   0000000        011244444444322                         24455588999999999


Q ss_pred             CCeeEEEEccCCCceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeEEeeecC--C--------cceEEEEEEcCCCEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVAL-HPTLYMFASASPDNIKQWKCPEGKFIQNLPG--H--------NAIINSICVNNEGVLVS  429 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~--h--------~~~v~~l~~~~~~~l~s  429 (479)
                      +++-..++++|.+.|.++.- +..+++|.++.++.+++||+.+++.++.+..  |        ..+|-+++.+. .+|+.
T Consensus       145 ~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~e-dWlvC  223 (325)
T KOG0649|consen  145 DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNE-DWLVC  223 (325)
T ss_pred             CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccC-ceEEe
Confidence            99999999999999999988 5556666555555799999999999877642  1        23455555443 35665


Q ss_pred             EeCCCcEEEEecCCCeEEEEE
Q psy8895         430 GADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       430 g~~dg~i~lWd~~~~~~~~~~  450 (479)
                      | ....+.+|++++.++.+.+
T Consensus       224 G-gGp~lslwhLrsse~t~vf  243 (325)
T KOG0649|consen  224 G-GGPKLSLWHLRSSESTCVF  243 (325)
T ss_pred             c-CCCceeEEeccCCCceEEE
Confidence            4 4568899999988876654

>KOG1517|consensus

Probab=99.60  E-value=1.7e-13  Score=137.40  Aligned_cols=213  Identities=18%  Similarity=0.317  Sum_probs=147.8

Q ss_pred             CCcEEEEEeCCCeEEEEECCC-----CceEEEEec---C----CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         230 GNEWFATGSADKIIKVWDLAT-----GKLKLSLTG---H----VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~-----~~~~~~~~~---h----~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      |..++.+|+.||.||||+-..     .+.+..+.+   +    .+.=.-++|.+...+|+++|+-..|++||........
T Consensus      1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence            456889999999999997422     222322222   1    1111345677766678888888999999997654432


Q ss_pred             CCCCCCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCCC-----------------------CCCeEEEEeCCCc
Q psy8895         298 QPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE-----------------------ESHPVITGSHDCT  353 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~-----------------------~~~~l~sgs~d~~  353 (479)
                      .. ..+.+..+.++.-+ ..|+.++.|..||.+++||.+.....                       .-..+++|+.||.
T Consensus      1202 di-P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~ 1280 (1387)
T KOG1517|consen 1202 DI-PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD 1280 (1387)
T ss_pred             ec-ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe
Confidence            21 12334456666544 34689999999999999997643220                       0124899999999


Q ss_pred             EEEEECCCCee--EEEEccCC--C-ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC-------CcceEEEEEE
Q psy8895         354 IRLWDLAAGKS--LCTLTNHK--K-SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPG-------HNAIINSICV  421 (479)
Q Consensus       354 v~iwd~~~~~~--~~~~~~h~--~-~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~-------h~~~v~~l~~  421 (479)
                      |++||++....  ..++..|.  + ..+++..++...++|+|+...|+||+.. |+.+..+..       ..+.+.|++|
T Consensus      1281 I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1281 IQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAF 1359 (1387)
T ss_pred             EEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCCCcceeee
Confidence            99999997422  22333343  3 4999999999999999999779999975 443333322       2356799999


Q ss_pred             cCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         422 NNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       422 ~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .|.. .||+|+.|.+|.||.-..+
T Consensus      1360 HP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             cchhHhhhhccCCceEEEeecCCc
Confidence            9988 8999999999999986543

>KOG4227|consensus

Probab=99.59  E-value=9.3e-14  Score=124.84  Aligned_cols=230  Identities=14%  Similarity=0.202  Sum_probs=171.8

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC------CceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT------GKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVK  286 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~------~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~  286 (479)
                      -+.+|.+-|.++.|+.++++|++|+.|..+++|.+..      .+.+..... |...|.|++|....+++++|+.+++|.
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI  130 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI  130 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence            3568999999999999999999999999999999852      344443333 447899999999999999999999999


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPV  345 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l  345 (479)
                      +-|+++.+.+.....-...+.++.+..+|..+.+++.+.++.+.+||.+....                     ....++
T Consensus       131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li  210 (609)
T KOG4227|consen  131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI  210 (609)
T ss_pred             eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence            99999876554433334456899999999999999999999999999775432                     112468


Q ss_pred             EEEeCCCcEEEEECCCCe-eEEEE---ccCCC---ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEE-eeec-CC---
Q psy8895         346 ITGSHDCTIRLWDLAAGK-SLCTL---TNHKK---SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI-QNLP-GH---  412 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~-~~~~~---~~h~~---~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~-~~~~-~h---  412 (479)
                      ++.+..+-+.+||++... ++...   ++...   .-..+-|+|.+..|.+--.+. =.++|+.+..+. .... ..   
T Consensus       211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY  290 (609)
T KOG4227|consen  211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY  290 (609)
T ss_pred             EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence            899999999999998643 33322   12222   225678999988887765554 456777664432 2221 11   


Q ss_pred             --cceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895         413 --NAIINSICVNNEGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       413 --~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~  443 (479)
                        ...+.++||-.|..+++|+++=-|.+|-+..
T Consensus       291 ~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~  323 (609)
T KOG4227|consen  291 CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR  323 (609)
T ss_pred             eeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence              1246677888888999999999999999763

>KOG1007|consensus

Probab=99.59  E-value=1.4e-13  Score=119.19  Aligned_cols=203  Identities=17%  Similarity=0.244  Sum_probs=148.5

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EEEE-----ecCCcCEEEEEEcC--CCCEEEEEECCCcEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KLSL-----TGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~~~-----~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~w  288 (479)
                      .|.+.|.|+-|.|++..+++-. |..|.+|++..+.. ...+     .+|....++-+|+|  ++..+++. .|++++.|
T Consensus       121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~  198 (370)
T KOG1007|consen  121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW  198 (370)
T ss_pred             HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence            3567899999999999998876 78999999987765 2222     12444567778888  56676664 67899999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLCT  367 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~  367 (479)
                      |+++..+.... ...+...+..+.|+|+.+.                        .|++++.||.|||||.+. ..++.+
T Consensus       199 D~RT~~~~~sI-~dAHgq~vrdlDfNpnkq~------------------------~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  199 DLRTMKKNNSI-EDAHGQRVRDLDFNPNKQH------------------------ILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             Eccchhhhcch-hhhhcceeeeccCCCCceE------------------------EEEEcCCCccEEEEeccCCCccccc
Confidence            99876543221 1123445778888887554                        367888899999999985 467889


Q ss_pred             EccCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCC-----------------------------eEEeeecCCcceE
Q psy8895         368 LTNHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEG-----------------------------KFIQNLPGHNAII  416 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~-----------------------------~~~~~~~~h~~~v  416 (479)
                      +.+|.--|+++-|+|. .+++.+++.| .+.+|...+-                             ..+.++..|.+.|
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSV  333 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSV  333 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccce
Confidence            9999999999999996 4666677666 5777753210                             0123556789999


Q ss_pred             EEEEEc-CCC-EEEEEeCCCcEEEEecCCCeE
Q psy8895         417 NSICVN-NEG-VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       417 ~~l~~~-~~~-~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      .+++++ .|. .+|+-|.||++.|=.+.....
T Consensus       334 Y~~aWSsadPWiFASLSYDGRviIs~V~r~~k  365 (370)
T KOG1007|consen  334 YALAWSSADPWIFASLSYDGRVIISSVPRFLK  365 (370)
T ss_pred             EEEeeccCCCeeEEEeccCceEEeecCChhhh
Confidence            999997 456 789999999999876654433

>KOG1009|consensus

Probab=99.58  E-value=5e-14  Score=127.30  Aligned_cols=157  Identities=27%  Similarity=0.387  Sum_probs=118.4

Q ss_pred             CccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCc---------eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         219 LGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGK---------LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       219 ~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~---------~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      ..+|.++.|.+++. .++||+.|..|++|.+..+.         ....+..|...|+++.|+|+|..|++|+++|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            36789999988766 99999999999999886432         234678899999999999999999999999999999


Q ss_pred             ECCCCCcccCCCC--------------CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcE
Q psy8895         289 DLEYNKAPVQPGS--------------MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI  354 (479)
Q Consensus       289 d~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v  354 (479)
                      ....-+.......              ..+...++.++|                         ..++..+++++.|.++
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W-------------------------s~d~~~l~s~s~dns~  147 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW-------------------------SPDSNFLVSGSVDNSV  147 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhc-------------------------cCCCceeeeeeccceE
Confidence            7653111100000              001111222222                         2344567889999999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKC  400 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~  400 (479)
                      ++||+..++.+..+..|...+.-++|.|-.+++++-+.|. .+....
T Consensus       148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~  194 (434)
T KOG1009|consen  148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSA  194 (434)
T ss_pred             EEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeee
Confidence            9999999999999999999999999999999998887774 444443

>KOG1524|consensus

Probab=99.58  E-value=1.2e-13  Score=128.97  Aligned_cols=183  Identities=19%  Similarity=0.317  Sum_probs=131.4

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+..|.+.+.|-+|+|||.-|++++.||.|++|. ++|-...++.....+|.|++|.|+...++-|-. +.+.+=-+...
T Consensus        99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n  176 (737)
T KOG1524|consen   99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAAN  176 (737)
T ss_pred             hhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeecccc
Confidence            4567999999999999999999999999999998 456555555566779999999999877665533 33444333211


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK  373 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~  373 (479)
                      ..+.+  -..+.+-|.++.|++..+                         .+++|++|-..++||.. |..+.+-..|+.
T Consensus       177 ~k~i~--WkAHDGiiL~~~W~~~s~-------------------------lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey  228 (737)
T KOG1524|consen  177 SKIIR--WRAHDGLVLSLSWSTQSN-------------------------IIASGGEDFRFKIWDAQ-GANLFTSAAEEY  228 (737)
T ss_pred             cceeE--EeccCcEEEEeecCcccc-------------------------ceeecCCceeEEeeccc-CcccccCChhcc
Confidence            11111  123455667777776543                         46677788888888865 566777778999


Q ss_pred             ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEE
Q psy8895         374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCF  438 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~l  438 (479)
                      +|++++|.|+ ..++.+|.+..++=           +...+.|..+++|+|| .++.|...|.+.+
T Consensus       229 ~ITSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             ceeeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence            9999999999 77777776655521           1234568889999999 7777777777653

>KOG1240|consensus

Probab=99.58  E-value=8e-13  Score=134.59  Aligned_cols=220  Identities=16%  Similarity=0.229  Sum_probs=140.8

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceE-----EEEecC-CcCEEEE-EEcC-CCC-EEEEEECCCcEEEE
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLK-----LSLTGH-VGSVRGL-TVSP-RHP-YLFSCGDDRTVKCW  288 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~-----~~~~~h-~~~v~~v-~~~~-~~~-~l~s~~~d~~i~~w  288 (479)
                      ..+.++.+-+.++.+|.++.||.|++.++...  +..     .....+ .+.+.++ ++.. .+. .++.+..-+.|..|
T Consensus      1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~ 1178 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSW 1178 (1431)
T ss_pred             CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEe
Confidence            45667777788999999999999999998762  111     111112 2233333 3322 223 66777788899999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------------CCCCeEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------------EESHPVI  346 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------------~~~~~l~  346 (479)
                      |++..............+.+.+++.+|.+..++.|+..|.+.+||++-...                      ..+..+.
T Consensus      1179 D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred             cchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEE
Confidence            998654333322233457799999999999999999999999999764321                      1122344


Q ss_pred             EEe-CCCcEEEEECCCCeeEEEEccCC-----------------C--ceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeE
Q psy8895         347 TGS-HDCTIRLWDLAAGKSLCTLTNHK-----------------K--SVRSVAL-HPTLYMFASASPDNIKQWKCPEGKF  405 (479)
Q Consensus       347 sgs-~d~~v~iwd~~~~~~~~~~~~h~-----------------~--~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~  405 (479)
                      +++ ..+.|-+|++.+|.+-.++-..+                 .  .....++ .+.+..+.++++.+|+.||....+.
T Consensus      1259 ~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             ecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            455 67899999999986655443220                 0  1111222 3344555666667899999542111


Q ss_pred             E------------------------------------------------ee--------ecCCcceEEEEEEcCC--CEE
Q psy8895         406 I------------------------------------------------QN--------LPGHNAIINSICVNNE--GVL  427 (479)
Q Consensus       406 ~------------------------------------------------~~--------~~~h~~~v~~l~~~~~--~~l  427 (479)
                      .                                                ..        -..|...|+.+++...  .+|
T Consensus      1339 ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~ll 1418 (1431)
T KOG1240|consen 1339 SSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLL 1418 (1431)
T ss_pred             ccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEE
Confidence            0                                                00        0246677887776433  489


Q ss_pred             EEEeCCCcEEEE
Q psy8895         428 VSGADNGTMCFW  439 (479)
Q Consensus       428 ~sg~~dg~i~lW  439 (479)
                      ++++.||.|+||
T Consensus      1419 vs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1419 VSSSRDGVIKIW 1430 (1431)
T ss_pred             EEecCCCeeeec
Confidence            999999999999

>KOG1963|consensus

Probab=99.58  E-value=5.9e-13  Score=131.54  Aligned_cols=226  Identities=18%  Similarity=0.285  Sum_probs=142.2

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      |...|.+++|+++|.+|.||+..+.+-+|.+.+++ .+-+..-.++|..+.++||+......-.|++|.+-...+.....
T Consensus       250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~  328 (792)
T KOG1963|consen  250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS  328 (792)
T ss_pred             cccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence            67889999999999999999999999999999988 45566677899999999999998888899999998652221100


Q ss_pred             C-----CC----CCCCCCCeEEEEEeC-----------------------------------------------------
Q psy8895         298 Q-----PG----SMDSESGIFSMTFDN-----------------------------------------------------  315 (479)
Q Consensus       298 ~-----~~----~~~~~~~i~~~~~~~-----------------------------------------------------  315 (479)
                      .     ..    .....+-...+.++|                                                     
T Consensus       329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~  408 (792)
T KOG1963|consen  329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR  408 (792)
T ss_pred             hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence            0     00    000001111122222                                                     


Q ss_pred             CCCEEEEEe--------CCC--eEEEEeCCCCCC------------------------CCCCeEEEEeCCCcEEEEECCC
Q psy8895         316 SGSRLITTE--------ADK--TVKLYKEDDSAT------------------------EESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       316 ~~~~l~~~~--------~d~--~i~~~~~~~~~~------------------------~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      .|.++++..        .|+  .++.|.......                        ..+..+++++.||.+++|-+..
T Consensus       409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~  488 (792)
T KOG1963|consen  409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD  488 (792)
T ss_pred             cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence            222333221        111  234443322110                        0122678999999999998832


Q ss_pred             ------Ce----eEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCC-CeEEeeecCCcceEEEEEEc----CCCE
Q psy8895         362 ------GK----SLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE-GKFIQNLPGHNAIINSICVN----NEGV  426 (479)
Q Consensus       362 ------~~----~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~----~~~~  426 (479)
                            ..    +...-..|..++++++|+.||.+++.+.++.|.+||..+ .++.....--...+..+++.    .++.
T Consensus       489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  568 (792)
T KOG1963|consen  489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGA  568 (792)
T ss_pred             ccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccc
Confidence                  21    222222478899999999999999999999999999988 33333222122223333332    2222


Q ss_pred             EEEEeCCCcEEEEecCCCe
Q psy8895         427 LVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~~  445 (479)
                      + ......++.+|++-+..
T Consensus       569 ~-~~~~~~~l~~WNll~~~  586 (792)
T KOG1963|consen  569 L-VHATQQRLSVWNLLSMS  586 (792)
T ss_pred             e-eeccCceEehHhhhhhh
Confidence            3 33356788889887653

>KOG1188|consensus

Probab=99.56  E-value=2.1e-13  Score=120.70  Aligned_cols=194  Identities=16%  Similarity=0.309  Sum_probs=142.9

Q ss_pred             cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCCCCC-CCCe
Q psy8895         232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-ESGI  308 (479)
Q Consensus       232 ~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~i  308 (479)
                      ..+|++-..|.|++||..+++.+..++++...+..+.|..  ....+.+|+.||+|++||++............. ....
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5678888899999999999999999999999999998876  345788999999999999987654332211111 2233


Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EEEE-ccCCCceEEEEEeCC-Cc
Q psy8895         309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LCTL-TNHKKSVRSVALHPT-LY  385 (479)
Q Consensus       309 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~~~-~~h~~~v~~i~~~~~-~~  385 (479)
                      .+++....+..+++|+.-                     ...|..|.+||++..+. +..+ ..|...|+++.|+|. ..
T Consensus       121 ~~ld~nck~~ii~~GtE~---------------------~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTEL---------------------TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             eEeeccCcCCeEEecccc---------------------ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence            444443344444443210                     11356789999997655 5544 569999999999995 67


Q ss_pred             EEEEEcCCc-EEEEeCCCCeE---EeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeE
Q psy8895         386 MFASASPDN-IKQWKCPEGKF---IQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       386 ~l~s~s~d~-i~~w~~~~~~~---~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      +|++||-|+ +.++|...-..   +...-.|...|.++.|..++  .|.+-+.+.+..+|+++.+-+
T Consensus       180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~  246 (376)
T KOG1188|consen  180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE  246 (376)
T ss_pred             eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence            999999887 89999865432   33334677789999998877  788889999999999998753

>KOG1445|consensus

Probab=99.55  E-value=9.5e-14  Score=131.94  Aligned_cols=151  Identities=21%  Similarity=0.353  Sum_probs=121.4

Q ss_pred             EecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ++.+|...|+++.|+| -.+.|++++.|-+|++||+.+++....+.+|++.|.+++|+|+|+.+++.+.||+|++|+.++
T Consensus       672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs  751 (1012)
T KOG1445|consen  672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS  751 (1012)
T ss_pred             eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence            4667999999999999 457899999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEeCCCCCC---------------------CCCCeEEE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK----TVKLYKEDDSAT---------------------EESHPVIT  347 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~---------------------~~~~~l~s  347 (479)
                      .+.+...+......+-..+.|--+|.++++.+-|+    .+.+|+......                     ..+..+++
T Consensus       752 ~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt  831 (1012)
T KOG1445|consen  752 REQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT  831 (1012)
T ss_pred             CCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe
Confidence            77665544433445566788888899888776654    466666432110                     12346789


Q ss_pred             EeCCCcEEEEECCCCee
Q psy8895         348 GSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~  364 (479)
                      |-.|.+|..|.+-...+
T Consensus       832 GKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  832 GKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             cCCCceEEEEEecCCCc
Confidence            99999999998876554

>KOG1538|consensus

Probab=99.55  E-value=3.5e-13  Score=128.89  Aligned_cols=218  Identities=16%  Similarity=0.259  Sum_probs=154.7

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .|..++|-|||..|+.+.. ..+.+||.+.|..+.++++|.+.|.+++++.||+.+++|+.|+.+.+|....... ..  
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-Lk--   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-LK--   89 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce-ee--
Confidence            6788999999988776654 4688999999999999999999999999999999999999999999998643221 22  


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC---------------CCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS---------------ATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~---------------~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                       ..+...|-|+.|+|-...+++++-. ..-+|..+..               .+.++++++-|-.||+|.+-+....+.+
T Consensus        90 -YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   90 -YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             -eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence             3467789999999988888776543 3345544321               2356788999999999999876543332


Q ss_pred             E--EEccCCCceEEEEEeCCCcEEEEEcCCcEEE--E-------eCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC
Q psy8895         366 C--TLTNHKKSVRSVALHPTLYMFASASPDNIKQ--W-------KCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADN  433 (479)
Q Consensus       366 ~--~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~--w-------~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d  433 (479)
                      .  ...+..++|.+++|+|...   -|.+|.+-+  |       .+ +|+.+..-..-.-...|+.+.++| +++.|+.|
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg---~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSG---EGRNDILAVADWGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCC---CCccceEEEEeccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccCC
Confidence            2  2335678999999999743   123333222  2       22 233332211112234566777888 89999999


Q ss_pred             CcEEEEecCCCeEEEE
Q psy8895         434 GTMCFWDWRTGYNFQR  449 (479)
Q Consensus       434 g~i~lWd~~~~~~~~~  449 (479)
                      +.+++|.. .|-.+.+
T Consensus       244 k~L~~fTR-~GvrLGT  258 (1081)
T KOG1538|consen  244 KQLSLFTR-DGVRLGT  258 (1081)
T ss_pred             CceEEEee-cCeEEee
Confidence            99999974 4555544

>KOG1240|consensus

Probab=99.55  E-value=2.2e-12  Score=131.45  Aligned_cols=247  Identities=19%  Similarity=0.266  Sum_probs=169.9

Q ss_pred             CCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcC
Q psy8895         200 MPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSP  271 (479)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~  271 (479)
                      .+.++|+....+...+..|...|..++.+++ +.+++|||.||+||+|+.+.-       +...++.-..+.+.++...+
T Consensus      1029 ~p~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1029 SPPPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             CCCCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence            3455677777777778889999999888765 599999999999999998631       33344544567889999999


Q ss_pred             CCCEEEEEECCCcEEEEECCCCCcccC------CCCCCCCCCeEEE-EEeC-CCC-EEEEEeCCCeEEEEeCCCCC----
Q psy8895         272 RHPYLFSCGDDRTVKCWDLEYNKAPVQ------PGSMDSESGIFSM-TFDN-SGS-RLITTEADKTVKLYKEDDSA----  338 (479)
Q Consensus       272 ~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~~i~~~-~~~~-~~~-~l~~~~~d~~i~~~~~~~~~----  338 (479)
                      .+..++.++.||.|++.+++..+....      .......+.+..+ +|.. .+. .++.+..-+.|..||.....    
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            999999999999999999875221100      0011122333333 2322 233 67777888889999976431    


Q ss_pred             ---------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEc-cCCCceEEEEEeCCCc---EEEEEcC---CcEE
Q psy8895         339 ---------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLY---MFASASP---DNIK  396 (479)
Q Consensus       339 ---------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~---~l~s~s~---d~i~  396 (479)
                                     .+....++.|+..|.+-+||++-+.++.... .+...++.+..+|..+   ..++++.   +.+.
T Consensus      1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence                           1234579999999999999999998888765 3457788888877543   3333333   3499


Q ss_pred             EEeCCCCeEEeeecCC-----------------cc---eEEEEEEcCCCEEEEEeCCCcEEEEecCCCeE
Q psy8895         397 QWKCPEGKFIQNLPGH-----------------NA---IINSICVNNEGVLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       397 ~w~~~~~~~~~~~~~h-----------------~~---~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      +|+..+|.+...+-..                 +.   .+.+....+++.+.+|+.|..||.||....+.
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            9999888665443211                 11   12222234566899999999999999876543

>KOG1587|consensus

Probab=99.55  E-value=1.4e-12  Score=128.52  Aligned_cols=226  Identities=20%  Similarity=0.300  Sum_probs=162.2

Q ss_pred             CCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCce--EE----EEecCCcCEEEEEEcCCCCE--EEEEECCCcEEEE
Q psy8895         218 HLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKL--KL----SLTGHVGSVRGLTVSPRHPY--LFSCGDDRTVKCW  288 (479)
Q Consensus       218 h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~--~~----~~~~h~~~v~~v~~~~~~~~--l~s~~~d~~i~~w  288 (479)
                      -...|.|+.|+| +..+++.|+.+|.|-+||++.+..  ..    ....|..++..+.|.++-.-  +++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            457899999999 567889999999999999987754  22    23457889999998765444  8999999999999


Q ss_pred             ECCCCCcccCCC----------CCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC------------------
Q psy8895         289 DLEYNKAPVQPG----------SMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT------------------  339 (479)
Q Consensus       289 d~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~------------------  339 (479)
                      +++....+....          ......++.++.|.+.. ..+++|+.+|.|..-.......                  
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            986543321110          01223467889998754 5788999999887633221110                  


Q ss_pred             -------CCCC-eEEEEeCCCcEEEEECC-CCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCC--eEE
Q psy8895         340 -------EESH-PVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEG--KFI  406 (479)
Q Consensus       340 -------~~~~-~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~--~~~  406 (479)
                             +... .+++++ |-+|+||... ...++..+..+...|++++|||... .|+++..+ ++.+||+...  ..+
T Consensus       401 v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV  479 (555)
T ss_pred             eEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence                   1112 244444 9999999988 6778888888888899999999864 56666655 5999998543  334


Q ss_pred             eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       407 ~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .+.+-+....+.+.+++.+ .|+.|+..|++.+|++..+
T Consensus       480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            4444445566677788877 8999999999999999754

>KOG1188|consensus

Probab=99.53  E-value=3.9e-13  Score=119.06  Aligned_cols=231  Identities=18%  Similarity=0.262  Sum_probs=155.5

Q ss_pred             EEEecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCceEE--EEecCC-cCEEEEEEcCCCCEEEEEE----CC
Q psy8895         212 YRVISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGKLKL--SLTGHV-GSVRGLTVSPRHPYLFSCG----DD  282 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~~~~--~~~~h~-~~v~~v~~~~~~~~l~s~~----~d  282 (479)
                      ...+.+|...+..++|..  .+..+.+++.||+||+||+++.....  .+.++. .+-.+++..-.+..+.+|.    .|
T Consensus        63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~  142 (376)
T KOG1188|consen   63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSD  142 (376)
T ss_pred             hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCc
Confidence            345778888888888876  56789999999999999999875543  445555 3556666654566666653    46


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCC--------------------
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSATEE--------------------  341 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~--------------------  341 (479)
                      -.+.+||++..+..+....-.+...|.++.|+|+. +.|++|+-||.+.+||......++                    
T Consensus       143 A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  143 ASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             eEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecC
Confidence            78999999877664333333567789999999865 688999999999999986543211                    


Q ss_pred             C-CeEEEEeCCCcEEEEECCCCeeEEEEccCCCc------e----EEEEE-eC-CCcEEEEEcC--CcEEEEe---CCCC
Q psy8895         342 S-HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS------V----RSVAL-HP-TLYMFASASP--DNIKQWK---CPEG  403 (479)
Q Consensus       342 ~-~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~------v----~~i~~-~~-~~~~l~s~s~--d~i~~w~---~~~~  403 (479)
                      . ..+.+-+...+..+|+++.+.+...+....-.      .    .-|.. +| +...++.+..  ++..++-   ..++
T Consensus       223 ~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~  302 (376)
T KOG1188|consen  223 KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSG  302 (376)
T ss_pred             CcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccc
Confidence            0 14667778888999999988766555433110      0    11111 23 3444444443  3343332   2333


Q ss_pred             e---EEeeecC-CcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         404 K---FIQNLPG-HNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       404 ~---~~~~~~~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .   ..-.+++ |...|.+++|.-.+ .+.||++||.+.+|..+
T Consensus       303 ~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  303 SLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE  346 (376)
T ss_pred             cccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence            2   2344565 66778888887544 99999999999999843

>KOG0290|consensus

Probab=99.51  E-value=4.3e-13  Score=116.24  Aligned_cols=201  Identities=14%  Similarity=0.263  Sum_probs=139.2

Q ss_pred             CCCccEEEEEEcCCC-----cEEEEEeCCCeEEEEECCC--Cce--EEEE-----ecCCcCEEEEEEcC-CCCEEEEEEC
Q psy8895         217 GHLGWVRCVAVEPGN-----EWFATGSADKIIKVWDLAT--GKL--KLSL-----TGHVGSVRGLTVSP-RHPYLFSCGD  281 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g-----~~l~sgs~d~~i~iWd~~~--~~~--~~~~-----~~h~~~v~~v~~~~-~~~~l~s~~~  281 (479)
                      .|..+++.+-|.|+.     .+|||.+  ..+|+|.+..  .+.  ...+     ..+..++++..|+. +-+++.++|-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            588889999998875     3566654  4799999873  221  1112     23456788888876 4567889999


Q ss_pred             CCcEEEEECCCCCc-ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         282 DRTVKCWDLEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       282 d~~i~~wd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      |-++.+||++.+.. ........+...++.++|...+.                        ..+++.+.||.||++|++
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~------------------------~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSR------------------------DVFASVGADGSVRMFDLR  227 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCcc------------------------ceEEEecCCCcEEEEEec
Confidence            99999999987632 11111234566788888876433                        235666777777777776


Q ss_pred             CCeeEEEE---ccCCCceEEEEEeCC-CcEEEEEcCC--cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCC--EEEEEe
Q psy8895         361 AGKSLCTL---TNHKKSVRSVALHPT-LYMFASASPD--NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEG--VLVSGA  431 (479)
Q Consensus       361 ~~~~~~~~---~~h~~~v~~i~~~~~-~~~l~s~s~d--~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~  431 (479)
                      ..+.-..+   .....+...+++++. -.++|+-..|  +|.+-|+.. +..+.++.+|++.|+.+++.|..  .|.|++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            54332211   122346677788774 5566665555  488888754 46688899999999999999876  899999


Q ss_pred             CCCcEEEEecCC
Q psy8895         432 DNGTMCFWDWRT  443 (479)
Q Consensus       432 ~dg~i~lWd~~~  443 (479)
                      +|....+||+.+
T Consensus       308 DD~qaliWDl~q  319 (364)
T KOG0290|consen  308 DDCQALIWDLQQ  319 (364)
T ss_pred             CcceEEEEeccc
Confidence            999999999875

>KOG2110|consensus

Probab=99.51  E-value=1.4e-11  Score=110.45  Aligned_cols=194  Identities=15%  Similarity=0.239  Sum_probs=143.3

Q ss_pred             EEEEEEcCCCcEEEEEeCC--CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         222 VRCVAVEPGNEWFATGSAD--KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d--~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      |..+-|+  ..++|-.+.+  +.+++.+.+.+..+..+. ...+|.+|.++.+  .|+.+-.+ .|.++|++..+.....
T Consensus        49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI  122 (391)
T KOG2110|consen   49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTI  122 (391)
T ss_pred             EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhh
Confidence            4445555  3455554444  459999998887776654 4457899988754  55555444 4999999877665443


Q ss_pred             CCC-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE
Q psy8895         300 GSM-DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV  378 (479)
Q Consensus       300 ~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i  378 (479)
                      ... ....++..+..++.+.+++--+                       ....|.|.+||+.+-+++.++..|++.+.++
T Consensus       123 ~t~~~n~~gl~AlS~n~~n~ylAyp~-----------------------s~t~GdV~l~d~~nl~~v~~I~aH~~~lAal  179 (391)
T KOG2110|consen  123 ETTPPNPKGLCALSPNNANCYLAYPG-----------------------STTSGDVVLFDTINLQPVNTINAHKGPLAAL  179 (391)
T ss_pred             hccCCCccceEeeccCCCCceEEecC-----------------------CCCCceEEEEEcccceeeeEEEecCCceeEE
Confidence            222 2333455565555555554211                       1125789999999999999999999999999


Q ss_pred             EEeCCCcEEEEEcCCc--EEEEeCCCCeEEeeecCC--cceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         379 ALHPTLYMFASASPDN--IKQWKCPEGKFIQNLPGH--NAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       379 ~~~~~~~~l~s~s~d~--i~~w~~~~~~~~~~~~~h--~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      +|+++|.++|++|+.+  |+++.+.+|+.++.+...  ...|.+++|++++ +|++.|..++|+++-+++-
T Consensus       180 afs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  180 AFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             EECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            9999999999999985  899999999999887643  3467899999999 8888899999999998764

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.5e-12  Score=125.94  Aligned_cols=203  Identities=14%  Similarity=0.128  Sum_probs=132.2

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVK  286 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~  286 (479)
                      ..+..|...+.+.+|+|||+.|+.++.+   ..|.+||+.+++.  +..+.+|   ....+|+|||+.|+.++ .++.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3456778889999999999999887754   3699999988754  2333444   34679999999888764 678766


Q ss_pred             EE--ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-e
Q psy8895         287 CW--DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-K  363 (479)
Q Consensus       287 ~w--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~  363 (479)
                      +|  |+........   ......+....|+|+++.++..+.                        .++..+||++... .
T Consensus       274 Iy~~d~~~~~~~~l---t~~~~~~~~~~wSpDG~~i~f~s~------------------------~~g~~~I~~~~~~~~  326 (429)
T PRK01742        274 IYVMGANGGTPSQL---TSGAGNNTEPSWSPDGQSILFTSD------------------------RSGSPQVYRMSASGG  326 (429)
T ss_pred             EEEEECCCCCeEee---ccCCCCcCCEEECCCCCEEEEEEC------------------------CCCCceEEEEECCCC
Confidence            65  5544332211   112334567889999887654332                        2333444443321 1


Q ss_pred             eEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         364 SLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      ....+ .+..  ....|+|++..++..+.+.+..||..+++.......+  ....+.|+||+ +|+.++.++.+.+|++.
T Consensus       327 ~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        327 GASLV-GGRG--YSAQISADGKTLVMINGDNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             CeEEe-cCCC--CCccCCCCCCEEEEEcCCCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            11122 2332  3568999999988887788888999888654322222  23456799999 88888899999888753


Q ss_pred             --CCeEEEEE
Q psy8895         443 --TGYNFQRL  450 (479)
Q Consensus       443 --~~~~~~~~  450 (479)
                        +|...+++
T Consensus       402 ~~~G~~~~~l  411 (429)
T PRK01742        402 SADGRFKARL  411 (429)
T ss_pred             ECCCCceEEc
Confidence              45544433

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=2.5e-10  Score=109.39  Aligned_cols=236  Identities=17%  Similarity=0.158  Sum_probs=141.3

Q ss_pred             EEEEEcCCCcEEEEEe-CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCCCCEEEEEECC-CcEEEEECCCC
Q psy8895         223 RCVAVEPGNEWFATGS-ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPRHPYLFSCGDD-RTVKCWDLEYN  293 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs-~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~d-~~i~~wd~~~~  293 (479)
                      .++++++||++++.++ .++.+.++|.++.+.++.+...       ...+..+..+|..+.++..-.| +.|.+-|....
T Consensus        81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             ceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            4578889999988765 5799999999999988877543       2356777778888855555444 77777776554


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCC---------C-----------C----------C
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSAT---------E-----------E----------S  342 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~---------~-----------~----------~  342 (479)
                      ..... .............|+|++++++++ ...+.+-++|......         +           .          .
T Consensus       161 ~~~~~-~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~  239 (369)
T PF02239_consen  161 KNLKV-TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG  239 (369)
T ss_dssp             SCEEE-EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred             cccce-eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence            32211 112233456778999999987664 4455677777554311         0           0          0


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEE---cCC--cEEEEeCCCCeEEeeecCCc-ceE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA---SPD--NIKQWKCPEGKFIQNLPGHN-AII  416 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~---s~d--~i~~w~~~~~~~~~~~~~h~-~~v  416 (479)
                      ...++.-....+.+||..+.+.+++++..... ..+..+|+++.+...   +.+  .|.++|..+.+...++.... ..+
T Consensus       240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~  318 (369)
T PF02239_consen  240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV  318 (369)
T ss_dssp             SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E
T ss_pred             ceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE
Confidence            11112222345567888888999998876556 778889999888777   333  49999999988877765322 247


Q ss_pred             EEEEEcCCC--EEEEEeCCC-cEEEEecCCCeEEEEEEEeEecCCCCCceEEe
Q psy8895         417 NSICVNNEG--VLVSGADNG-TMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFF  466 (479)
Q Consensus       417 ~~l~~~~~~--~l~sg~~dg-~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (479)
                      .-+.|+++|  ..+|...++ .|.+||.+|.+.+++++      .++|++.|.
T Consensus       319 ~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~------~~tP~G~f~  365 (369)
T PF02239_consen  319 VHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP------VPTPTGKFN  365 (369)
T ss_dssp             EEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--------SEEEEEE
T ss_pred             eccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE------eeCCCeEec
Confidence            778999999  355555544 89999999999988877      456665554

...

>KOG0771|consensus

Probab=99.47  E-value=1.8e-12  Score=118.10  Aligned_cols=156  Identities=19%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC--CcCEEEEEEcCCC---CE--EEEEECCCcEEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH--VGSVRGLTVSPRH---PY--LFSCGDDRTVKCWD  289 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~~~---~~--l~s~~~d~~i~~wd  289 (479)
                      .|.+.|.++.|+|||++|++-+.| ..+||+.++|.++......  ......+.|+.|.   .+  ++.-..-+.|+.||
T Consensus       184 ~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~  262 (398)
T KOG0771|consen  184 AHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCD  262 (398)
T ss_pred             hhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEE
Confidence            367889999999999999999999 9999999999665544321  2234556677665   22  22334556777777


Q ss_pred             CCCCCc---ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         290 LEYNKA---PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       290 ~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      +.....   ............|.+++.+++|++++.|+.+|                         .|-+++..+-+.++
T Consensus       263 ~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG-------------------------sVai~~~~~lq~~~  317 (398)
T KOG0771|consen  263 ISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG-------------------------SVAIYDAKSLQRLQ  317 (398)
T ss_pred             eeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC-------------------------cEEEEEeceeeeeE
Confidence            642111   11111122234688899999888877665554                         45555555555555


Q ss_pred             EE-ccCCCceEEEEEeCCCcEEEEEcCCc-EEEE
Q psy8895         367 TL-TNHKKSVRSVALHPTLYMFASASPDN-IKQW  398 (479)
Q Consensus       367 ~~-~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w  398 (479)
                      -. +.|...|+.+.|+|+.+++++.+.+. ..+.
T Consensus       318 ~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  318 YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             eehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            44 46999999999999998888877663 4443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=4.1e-12  Score=125.45  Aligned_cols=167  Identities=17%  Similarity=0.246  Sum_probs=108.2

Q ss_pred             EEEEcCCCcEEEEEe-CCCeEEEE--ECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcccCC
Q psy8895         224 CVAVEPGNEWFATGS-ADKIIKVW--DLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs-~d~~i~iW--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~  299 (479)
                      +.+|+|||+.|+.++ .++.+.||  |+.++.. ..+..+...+....|+|||+.++.++ .++..++|++.........
T Consensus       252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~  330 (429)
T PRK01742        252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL  330 (429)
T ss_pred             ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence            357899999887764 67876665  6666554 45566767788899999999877554 5788888876432111111


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA  379 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~  379 (479)
                        .....  ....|+|+++.++..+.                         + .+.+||+.+++.......+  ...++.
T Consensus       331 --l~~~~--~~~~~SpDG~~ia~~~~-------------------------~-~i~~~Dl~~g~~~~lt~~~--~~~~~~  378 (429)
T PRK01742        331 --VGGRG--YSAQISADGKTLVMING-------------------------D-NVVKQDLTSGSTEVLSSTF--LDESPS  378 (429)
T ss_pred             --ecCCC--CCccCCCCCCEEEEEcC-------------------------C-CEEEEECCCCCeEEecCCC--CCCCce
Confidence              01111  34567777776654432                         2 2444777766543222222  235678


Q ss_pred             EeCCCcEEEEEcCC-cEEEEeC--CCCeEEeeecCCcceEEEEEEcC
Q psy8895         380 LHPTLYMFASASPD-NIKQWKC--PEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       380 ~~~~~~~l~s~s~d-~i~~w~~--~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      |+|++.+++.++.+ ...+|++  .+|.....+.+|.+.+...+++|
T Consensus       379 ~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp  425 (429)
T PRK01742        379 ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSP  425 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCC
Confidence            99999988887765 4666654  46778888888888888888876

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.47  E-value=7.1e-11  Score=112.95  Aligned_cols=221  Identities=15%  Similarity=0.285  Sum_probs=141.4

Q ss_pred             ccEEEEEEcCCCcEEEEEe-CCCeEEEEECC-CCce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC
Q psy8895         220 GWVRCVAVEPGNEWFATGS-ADKIIKVWDLA-TGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNK  294 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs-~d~~i~iWd~~-~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~  294 (479)
                      +....++++|++++|+.++ .++.|.+|+++ +++.  ..... ..+....++++|+++++++++ .++.|.+||++...
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            3456789999999887664 57889999997 3433  12222 233457899999999888776 47899999996432


Q ss_pred             cccC-CCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCC-----------------------CCCCCeEEEEe
Q psy8895         295 APVQ-PGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSA-----------------------TEESHPVITGS  349 (479)
Q Consensus       295 ~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~-----------------------~~~~~~l~sgs  349 (479)
                      .... ............+.++|++++++++ ..++.|.+|+.....                       .++...+++++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             CCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence            2111 1111122345678899999888554 566899999975421                       01234566666


Q ss_pred             C-CCcEEEEECCC--C--eeEEEEccC------CCceEEEEEeCCCcEEEEEcC--CcEEEEeCCCCe----EEeeecCC
Q psy8895         350 H-DCTIRLWDLAA--G--KSLCTLTNH------KKSVRSVALHPTLYMFASASP--DNIKQWKCPEGK----FIQNLPGH  412 (479)
Q Consensus       350 ~-d~~v~iwd~~~--~--~~~~~~~~h------~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~~~~----~~~~~~~h  412 (479)
                      . +++|.+||+..  +  +.+.++..+      ......+.++|+++.+.++..  +.|.+|++.+..    .+......
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~  273 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE  273 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc
Confidence            5 89999999973  2  223333221      112346889999987777643  359999885432    22222211


Q ss_pred             cceEEEEEEcCCC-EEEEEe-CCCcEEEEecC
Q psy8895         413 NAIINSICVNNEG-VLVSGA-DNGTMCFWDWR  442 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~-~dg~i~lWd~~  442 (479)
                       .....+.++|++ +|+++. .+++|.+|+++
T Consensus       274 -~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        274 -TQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             -ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence             134467899999 666555 58999999875

>KOG0290|consensus

Probab=99.45  E-value=3.3e-12  Score=110.80  Aligned_cols=191  Identities=17%  Similarity=0.211  Sum_probs=133.3

Q ss_pred             CCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCc---eEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECC
Q psy8895         217 GHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGK---LKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       217 ~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~  291 (479)
                      .+..++++..|+. +.++|.+.|-|-+..|||+.++.   ....+.+|..+|..++|..++. .++++|.||++|+||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            3556778888875 67899999999999999999863   4667889999999999998654 67899999999999998


Q ss_pred             CCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC-CCcEEEEECCC-CeeEEEE
Q psy8895         292 YNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH-DCTIRLWDLAA-GKSLCTL  368 (479)
Q Consensus       292 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~-d~~v~iwd~~~-~~~~~~~  368 (479)
                      ....... +-......+...++|+++..                        +++++-.. ...|.+.|++. ..++.++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDp------------------------nymATf~~dS~~V~iLDiR~P~tpva~L  283 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDP------------------------NYMATFAMDSNKVVILDIRVPCTPVARL  283 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCc------------------------hHHhhhhcCCceEEEEEecCCCcceehh
Confidence            6443211 11111133455555554322                        22333222 34688889886 4678999


Q ss_pred             ccCCCceEEEEEeCC-CcEEEEEcCCc-EEEEeCCCCeE--Eee--e-cCCcceEEEEEEcCCC--EEEEEe
Q psy8895         369 TNHKKSVRSVALHPT-LYMFASASPDN-IKQWKCPEGKF--IQN--L-PGHNAIINSICVNNEG--VLVSGA  431 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~-~~~l~s~s~d~-i~~w~~~~~~~--~~~--~-~~h~~~v~~l~~~~~~--~l~sg~  431 (479)
                      .+|++.|+.|+|.|. ...+.++++|. +.+||+.+...  ...  + -.-.+.|+.+.+++..  +++.+.
T Consensus       284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~  355 (364)
T KOG0290|consen  284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF  355 (364)
T ss_pred             hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe
Confidence            999999999999996 46778888885 89999865432  100  0 1134578888887432  565554

>KOG1524|consensus

Probab=99.44  E-value=1.2e-11  Score=115.66  Aligned_cols=166  Identities=14%  Similarity=0.185  Sum_probs=108.3

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      ...|.+-|.|+.|++..+.++||+.|-.-++||.. |+.+..-..|..+|++++|.|+ ..++.+|. +++|+   +   
T Consensus       182 WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~---~---  252 (737)
T KOG1524|consen  182 WRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARF---S---  252 (737)
T ss_pred             EeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeee---c---
Confidence            45799999999999999999999999999999964 5666677789999999999999 44444433 44542   1   


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                             ....+.|+.++|+++|..+++|+..|.+.+--...........=++......|.+-|+.++.+ ..++ ....
T Consensus       253 -------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~-d~LE-~p~r  323 (737)
T KOG1524|consen  253 -------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQ-DILE-FPQR  323 (737)
T ss_pred             -------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHH-HHhh-Cccc
Confidence                   123467999999999999999999987655322111111111123334445566666665433 2222 2334


Q ss_pred             eEEEEEeCCCcEEEEEcCCcEEEEeC
Q psy8895         375 VRSVALHPTLYMFASASPDNIKQWKC  400 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~i~~w~~  400 (479)
                      |...++  ....|+.+....+.++.-
T Consensus       324 v~k~sL--~Y~hLvvaTs~qvyiys~  347 (737)
T KOG1524|consen  324 VVKFSL--GYGHLVVATSLQVYIYSE  347 (737)
T ss_pred             eeeeee--ceeEEEEEeccEEEEEec
Confidence            444443  344455555555555543

>KOG1310|consensus

Probab=99.43  E-value=5e-12  Score=118.62  Aligned_cols=220  Identities=21%  Similarity=0.296  Sum_probs=147.5

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd  289 (479)
                      ..+.||++-|.|+.|+.+|.+|+|||.|-.+.|||.-..+.+..+ .+|..-|.++.|.|.  .+.+++|..|..|+++|
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            357899999999999999999999999999999999877777655 589999999999984  56788999999999999


Q ss_pred             CCCCCccc--------CCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC---------------------
Q psy8895         290 LEYNKAPV--------QPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT---------------------  339 (479)
Q Consensus       290 ~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~---------------------  339 (479)
                      +...+...        ......+...+-.++.-|++ ..+.+++.||+++-+|.+..-.                     
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            97432211        11112233455566777777 6788999999999999765210                     


Q ss_pred             -------CCCCeEEEEeCCCcEEEEECCCCeeEEEEcc-------CCCceEEE-EEeCCCcEEEEEcCCcEEEEeCCCCe
Q psy8895         340 -------EESHPVITGSHDCTIRLWDLAAGKSLCTLTN-------HKKSVRSV-ALHPTLYMFASASPDNIKQWKCPEGK  404 (479)
Q Consensus       340 -------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-------h~~~v~~i-~~~~~~~~l~s~s~d~i~~w~~~~~~  404 (479)
                             ....+++.|+.|-..++||.+..  +..+..       ......++ .|+|+.-.             ...+.
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~~~~pp~~~~cv~yf~p~hlk-------------n~~gn  268 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTMNTCPPKDCRCVRYFSPGHLK-------------NSQGN  268 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccccCCCCcccchhheecCcccc-------------Ccccc
Confidence                   12356899999999999996422  111110       01111222 22332210             00010


Q ss_pred             EEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         405 FIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       405 ~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      ..    .-...++-+.|+|+|  .|++=+ .-.|.++|+..++....+..
T Consensus       269 ~~----~~~~~~t~vtfnpNGtElLvs~~-gEhVYlfdvn~~~~~~~y~~  313 (758)
T KOG1310|consen  269 LD----RYITCCTYVTFNPNGTELLVSWG-GEHVYLFDVNEDKSPTPYFL  313 (758)
T ss_pred             cc----cceeeeEEEEECCCCcEEEEeeC-CeEEEEEeecCCCCceeecC
Confidence            00    011235667899998  455544 35899999998876655433

>KOG1587|consensus

Probab=99.41  E-value=3.8e-11  Score=118.40  Aligned_cols=202  Identities=15%  Similarity=0.251  Sum_probs=148.6

Q ss_pred             CeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcc--c--CCCCCCCCCCeEEEEEe
Q psy8895         241 KIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAP--V--QPGSMDSESGIFSMTFD  314 (479)
Q Consensus       241 ~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~--~--~~~~~~~~~~i~~~~~~  314 (479)
                      +.+.||+++.. .....+. -...|+++.|+|..+ .++.|..+|+|-+||++.....  .  ......+...+..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47899999876 3333333 456899999999765 5556778999999999876542  1  11223456678888887


Q ss_pred             CCCC--EEEEEeCCCeEEEEeCCCCCC------------------------------CCCCeEEEEeCCCcEEE---EEC
Q psy8895         315 NSGS--RLITTEADKTVKLYKEDDSAT------------------------------EESHPVITGSHDCTIRL---WDL  359 (479)
Q Consensus       315 ~~~~--~l~~~~~d~~i~~~~~~~~~~------------------------------~~~~~l~sgs~d~~v~i---wd~  359 (479)
                      .+..  -+++++.||.|..|+.+....                              .+...++.|+..|.|.-   ++.
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            6544  489999999999998654211                              12345889999999876   333


Q ss_pred             CCCe-----eEEEEccCCCceEEEEEeCCC-cEEEEEcCCcEEEEeCC-CCeEEeeecCCcceEEEEEEcCCC--EEEEE
Q psy8895         360 AAGK-----SLCTLTNHKKSVRSVALHPTL-YMFASASPDNIKQWKCP-EGKFIQNLPGHNAIINSICVNNEG--VLVSG  430 (479)
Q Consensus       360 ~~~~-----~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~-~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg  430 (479)
                      +.+.     ....+..|.++|+++.++|-+ ..|.++++..+++|... ....+..+..+...|+++++||-.  .++++
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~  460 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV  460 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence            3222     233455688999999999965 56667777789999987 666777777888889999999876  88999


Q ss_pred             eCCCcEEEEecCC
Q psy8895         431 ADNGTMCFWDWRT  443 (479)
Q Consensus       431 ~~dg~i~lWd~~~  443 (479)
                      ..||.+.+||+..
T Consensus       461 d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  461 DGDGNLDIWDLLQ  473 (555)
T ss_pred             cCCCceehhhhhc
Confidence            9999999999873

>KOG2110|consensus

Probab=99.40  E-value=6.9e-11  Score=106.12  Aligned_cols=121  Identities=16%  Similarity=0.240  Sum_probs=100.1

Q ss_pred             CCCccEEEEEEcCCCcEEEE-Ee-CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEECCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFAT-GS-ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT-VKCWDLEYN  293 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~s-gs-~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~~wd~~~~  293 (479)
                      .|...+.++++++++.++|- ++ ..|.|.|||..+-+....+..|.+++-+++|+++|.+++|+|+.|+ ||++.+..+
T Consensus       127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G  206 (391)
T KOG2110|consen  127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG  206 (391)
T ss_pred             CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence            35666778888877777764 33 3589999999999999999999999999999999999999999885 789999877


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS  337 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  337 (479)
                      +...+....-....|++++|+++.++|++.+..++|.+|+++..
T Consensus       207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence            76554433223467999999999999999999999999997643

>KOG1334|consensus

Probab=99.39  E-value=2.1e-12  Score=119.45  Aligned_cols=242  Identities=19%  Similarity=0.321  Sum_probs=170.4

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCC--CCEEEEEECCCcE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPR--HPYLFSCGDDRTV  285 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~--~~~l~s~~~d~~i  285 (479)
                      ..+.+.|.+|.+-|..+.|+..|..|+|||.|..|.+||..+++.+..+ .+|...|....|-|.  -+.+++++.||.+
T Consensus       132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv  211 (559)
T KOG1334|consen  132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV  211 (559)
T ss_pred             hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence            3445678899999999999999999999999999999999998877665 478777776677663  3468899999999


Q ss_pred             EEEECCCC-CcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC------------------------
Q psy8895         286 KCWDLEYN-KAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT------------------------  339 (479)
Q Consensus       286 ~~wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~------------------------  339 (479)
                      ++=.+-.. ..........+.+.+..++..|.. ..+.+++.|+.+.-+|+.....                        
T Consensus       212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P  291 (559)
T KOG1334|consen  212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP  291 (559)
T ss_pred             eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence            98765322 221111223456778888887754 4577888888888887654321                        


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCe------eEEEEccC------CCceEEEEEeCCCc-EEEEEcCCcEEEEeC--CCC-
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGK------SLCTLTNH------KKSVRSVALHPTLY-MFASASPDNIKQWKC--PEG-  403 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~------~~~~~~~h------~~~v~~i~~~~~~~-~l~s~s~d~i~~w~~--~~~-  403 (479)
                      ...+.+++|+.|-.+++||.+...      ++..+..|      .-.|+++.++.++. ++++=.+..|.++.-  ..| 
T Consensus       292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~  371 (559)
T KOG1334|consen  292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS  371 (559)
T ss_pred             CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence            123457899999999999987532      12333222      23589999996654 554444445877743  223 


Q ss_pred             ---------eEEee-ecCCcc--eEEEEEE-cCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         404 ---------KFIQN-LPGHNA--IINSICV-NNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       404 ---------~~~~~-~~~h~~--~v~~l~~-~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                               ..++. .+||..  .|..+-| -|.. ++++||+-|.|.||+-++++.++-+
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M  432 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM  432 (559)
T ss_pred             CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence                     22333 678864  4666644 4655 9999999999999999999877654

>KOG1523|consensus

Probab=99.39  E-value=4.2e-11  Score=105.51  Aligned_cols=216  Identities=13%  Similarity=0.188  Sum_probs=152.6

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-C
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN-K  294 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~-~  294 (479)
                      .++|+|.+|++|+..+|.+.....|.||......   ...++..|...|+.++|+|..+.|++|+.|..-++|....+ .
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~   89 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT   89 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence            4789999999999999999999999999987654   56788999999999999999999999999999999987432 2


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------CCCCCeEEEEeCCCc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------------TEESHPVITGSHDCT  353 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------------~~~~~~l~sgs~d~~  353 (479)
                      -.........+....++.|+|..+.+++|+....|-++-.+...                     .+++-+++.||.|+.
T Consensus        90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k  169 (361)
T KOG1523|consen   90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGK  169 (361)
T ss_pred             eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcc
Confidence            11111113356778899999999999999999998887544321                     123456889999999


Q ss_pred             EEEEECCC------------------CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCe-EEeeecCCc
Q psy8895         354 IRLWDLAA------------------GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGK-FIQNLPGHN  413 (479)
Q Consensus       354 v~iwd~~~------------------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~-~~~~~~~h~  413 (479)
                      +|++..--                  |.....+....+-|..+.|+|++..|+-.+-|. +.+=|..... .+..+....
T Consensus       170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~  249 (361)
T KOG1523|consen  170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQ  249 (361)
T ss_pred             eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhcc
Confidence            99986421                  111222223346799999999999998887775 6665554332 333332222


Q ss_pred             ceEEEEEEcCCCEEEEEeCCC
Q psy8895         414 AIINSICVNNEGVLVSGADNG  434 (479)
Q Consensus       414 ~~v~~l~~~~~~~l~sg~~dg  434 (479)
                      -+..++.+-.+..++.++.|.
T Consensus       250 lP~ls~~~ise~~vv~ag~~c  270 (361)
T KOG1523|consen  250 LPLLSVSWISENSVVAAGYDC  270 (361)
T ss_pred             CCceeeEeecCCceeecCCCC
Confidence            333444443344444444543

>KOG1272|consensus

Probab=99.39  E-value=1.6e-12  Score=119.56  Aligned_cols=210  Identities=14%  Similarity=0.208  Sum_probs=165.3

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      ..+.++.+|..|+.|+.-|.+-.+|..++++...+.-- ..|.++.|-.+..+++.+ ..+-+.+||-.. ....   +.
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~-Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G-tElH---Cl  206 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM-ETVRDVTFLHNEQFFAVA-QKKYVYVYDNNG-TELH---CL  206 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeeeehh-hhhhhhhhhcchHHHHhh-hhceEEEecCCC-cEEe---eh
Confidence            45678889999999999999999999999988776533 468889888777666554 667889998542 2221   22


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       303 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      .....+..+.|.|-.-.|++++..|-++.-|.....                 ++.+..+-.|...|+|-+|.-...+++
T Consensus       207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence            334567889999998899999999999988865432                 122334668999999999999999999


Q ss_pred             EEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         366 CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      ..+..|.++|.+|++.++|+++++++.|. ++|||+..-..+++... +-....+++|..|.||.+ ....+.||-
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~-~G~~v~iw~  360 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALS-YGDHVQIWK  360 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeee-cCCeeeeeh
Confidence            88889999999999999999999999885 99999987766655544 345677889988888765 445889996

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.38  E-value=1.1e-10  Score=101.57  Aligned_cols=155  Identities=17%  Similarity=0.344  Sum_probs=108.0

Q ss_pred             EEEEcCCCCEEEEE-E---------CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         266 GLTVSPRHPYLFSC-G---------DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       266 ~v~~~~~~~~l~s~-~---------~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                      .+.|+++|.+|+.- .         .-+...+|.++..............+.|.+++|+|+++.+++             
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~fav-------------   76 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAV-------------   76 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEE-------------
Confidence            56778888766532 2         113456666643333333222334556999999999988764             


Q ss_pred             CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecC
Q psy8895         336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~  411 (479)
                                +.|..++.|.+||++ ++.+..+.  ...++.|.|+|++++++.++-+    .+.+||..+.+.+.... 
T Consensus        77 ----------i~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-  142 (194)
T PF08662_consen   77 ----------IYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-  142 (194)
T ss_pred             ----------EEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence                      345556788899986 66677764  4577899999999999888643    48999999888877654 


Q ss_pred             CcceEEEEEEcCCC-EEEEEeC------CCcEEEEecCCCeEEEE
Q psy8895         412 HNAIINSICVNNEG-VLVSGAD------NGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       412 h~~~v~~l~~~~~~-~l~sg~~------dg~i~lWd~~~~~~~~~  449 (479)
                      |. .++.++++|+| +++++..      |..++||++. |..+.+
T Consensus       143 ~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~  185 (194)
T PF08662_consen  143 HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK  185 (194)
T ss_pred             cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence            33 36788999999 7777654      7888999985 655543

>KOG2394|consensus

Probab=99.37  E-value=1.6e-11  Score=115.12  Aligned_cols=222  Identities=14%  Similarity=0.216  Sum_probs=144.0

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEe--c--CCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCC
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLT--G--HVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMD  303 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--~--h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  303 (479)
                      |++--+..|=.-|.+.+.|....+..+.+.  .  -+..|+++.|-|... .++.+-.+|.+.++|.+.........   
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~---  259 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS---  259 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc---
Confidence            455555666666777777765432211111  1  236899999998655 44456788999999874321110000   


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEeCCC------CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         304 SESGIFSMTFDNSGSRLITTEA-----DKTVKLYKEDD------SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~------~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                             ....+++..+.....     ++-+.-|....      ....+...|++.|+||.+||+|..+.+.+..++.--
T Consensus       260 -------~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF  332 (636)
T KOG2394|consen  260 -------YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF  332 (636)
T ss_pred             -------ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc
Confidence                   000111111111100     01122222111      123456788999999999999999988877776666


Q ss_pred             CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcC----------------------------
Q psy8895         373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNN----------------------------  423 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~----------------------------  423 (479)
                      +...+++||||+++++++++|. |.+|.....+.+..-+||+.+|+.++|+|                            
T Consensus       333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r  412 (636)
T KOG2394|consen  333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIR  412 (636)
T ss_pred             cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccc
Confidence            7899999999999999999886 89999999999999999999999999982                            


Q ss_pred             -------C--------------CEEEEEeCCCcEEEEecCCCeEEEEEEEeEecCCCC
Q psy8895         424 -------E--------------GVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPK  460 (479)
Q Consensus       424 -------~--------------~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~  460 (479)
                             +              .++.+.+.|-.+.|||+........-.+-.+++.|+
T Consensus       413 ~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~~~p~~~~R~~~n  470 (636)
T KOG2394|consen  413 ANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVPHPPLYRLRRHPN  470 (636)
T ss_pred             cCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcccCCchhhhhcCCC
Confidence                   0              147788899999999998765544222333444443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.35  E-value=9.6e-10  Score=105.17  Aligned_cols=209  Identities=16%  Similarity=0.270  Sum_probs=134.2

Q ss_pred             EEEEeCCCeEEEEECCC-Cc--eEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895         234 FATGSADKIIKVWDLAT-GK--LKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNKAPVQPGSMDSESGIF  309 (479)
Q Consensus       234 l~sgs~d~~i~iWd~~~-~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~i~  309 (479)
                      +++...++.|.+||+.+ ++  .+..+. +.+....++++|++++|+.++ .++.|.+|+++..................
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            44557789999999964 43  334443 335567889999999887654 57899999986321111111111223456


Q ss_pred             EEEEeCCCCEEEEEeC-CCeEEEEeCCCCC--------------------CCCCCeE-EEEeCCCcEEEEECCCCeeEE-
Q psy8895         310 SMTFDNSGSRLITTEA-DKTVKLYKEDDSA--------------------TEESHPV-ITGSHDCTIRLWDLAAGKSLC-  366 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~--------------------~~~~~~l-~sgs~d~~v~iwd~~~~~~~~-  366 (479)
                      .+.++|+++.+++++. ++.+.+|+.+...                    .++...+ ++...++.|.+||+.+...+. 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            7999999998887764 7789999775210                    0122334 455667999999998643221 


Q ss_pred             ------EEccCCCceEEEEEeCCCcEEEEEcC--CcEEEEeCCC--Ce--EEeeecCC------cceEEEEEEcCCC-EE
Q psy8895         367 ------TLTNHKKSVRSVALHPTLYMFASASP--DNIKQWKCPE--GK--FIQNLPGH------NAIINSICVNNEG-VL  427 (479)
Q Consensus       367 ------~~~~h~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~~--~~--~~~~~~~h------~~~v~~l~~~~~~-~l  427 (479)
                            ... .....+.+.|+|+++++.++..  +.+.+|++..  ++  .++.+..+      ......+.++|++ ++
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                  111 1234578999999988866654  4599999863  33  33433221      2233467889998 66


Q ss_pred             EEEe-CCCcEEEEecCCC
Q psy8895         428 VSGA-DNGTMCFWDWRTG  444 (479)
Q Consensus       428 ~sg~-~dg~i~lWd~~~~  444 (479)
                      +++. .+++|.+|++.+.
T Consensus       243 yv~~~~~~~I~v~~i~~~  260 (330)
T PRK11028        243 YACDRTASLISVFSVSED  260 (330)
T ss_pred             EEecCCCCeEEEEEEeCC
Confidence            6664 5789999998643

>KOG3881|consensus

Probab=99.35  E-value=1.4e-10  Score=104.82  Aligned_cols=209  Identities=17%  Similarity=0.204  Sum_probs=152.2

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc----eEEEEecCCcCEEEEEEcCCCCE-EEEEECC--CcEEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK----LKLSLTGHVGSVRGLTVSPRHPY-LFSCGDD--RTVKCWD  289 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d--~~i~~wd  289 (479)
                      ...+.|..++..  ...|+++-.+|.+.+|..+.+.    .+..+..+ ..+..|.-++..+. +++||..  +.+++||
T Consensus       103 l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwd  179 (412)
T KOG3881|consen  103 LGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWD  179 (412)
T ss_pred             cccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeee
Confidence            345566666543  3467777889999999988442    22233333 34455555555554 4558888  8999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC--CCeEEEEeCCCcEEEEECCCC-eeEE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE--SHPVITGSHDCTIRLWDLAAG-KSLC  366 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~l~sgs~d~~v~iwd~~~~-~~~~  366 (479)
                      ++..+.+...            .--|+.. |     +-.+.+|+.+....+.  ...+++++.-+.+|+||.+.+ +++.
T Consensus       180 le~~~qiw~a------------KNvpnD~-L-----~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~  241 (412)
T KOG3881|consen  180 LEQSKQIWSA------------KNVPNDR-L-----GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA  241 (412)
T ss_pred             cccceeeeec------------cCCCCcc-c-----cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence            9865433221            1112211 1     2256677766655555  677999999999999999876 5788


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      ++.-.+.+++++...|++..+.++... .+..+|...+++... +++-.+.+.++-..|.+ +|+++|-|+.+||+|++|
T Consensus       242 ~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  242 QFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            888778899999999999888777655 599999999988765 88889999999999987 999999999999999998


Q ss_pred             CeE
Q psy8895         444 GYN  446 (479)
Q Consensus       444 ~~~  446 (479)
                      ...
T Consensus       322 rkl  324 (412)
T KOG3881|consen  322 RKL  324 (412)
T ss_pred             chh
Confidence            533

>KOG1517|consensus

Probab=99.32  E-value=2.9e-10  Score=114.71  Aligned_cols=228  Identities=14%  Similarity=0.277  Sum_probs=157.0

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC---cCEEEEEEcC--CCCEEEEEECCCcEEEEECCCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV---GSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~---~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      ...-..+.|+|-...++++.....|+|||.+.+++...|..+.   ..|..+.+-.  |-.++++|+.||.||+|+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            3345567788888889988877899999999998877665443   3577777643  4457899999999999974211


Q ss_pred             ---C-cccCC------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCe
Q psy8895         294 ---K-APVQP------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHP  344 (479)
Q Consensus       294 ---~-~~~~~------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~  344 (479)
                         + .....      ......+.-.-+.|.....++.+++....|++||......                   ..+..
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence               1 11110      0001111124456666666777777788999999764321                   12467


Q ss_pred             EEEEeCCCcEEEEECCCCe---eEEEEccCCCc--eEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeE--EeeecCCc--
Q psy8895         345 VITGSHDCTIRLWDLAAGK---SLCTLTNHKKS--VRSVALHPTLY-MFASASPD-NIKQWKCPEGKF--IQNLPGHN--  413 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~---~~~~~~~h~~~--v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~--~~~~~~h~--  413 (479)
                      ++.|-.||.||+||.+...   .+...+.|...  |..+.+.+.|. .+++++.+ .|.+||+.....  ..+...|.  
T Consensus      1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred             EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence            8999999999999998643   45666778776  99999988543 36666665 599999876321  12223332  


Q ss_pred             -ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         414 -AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       414 -~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                       +.++++.+.++. .+|+|+. +.|+||++. |+.+.
T Consensus      1304 Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~ 1338 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLN 1338 (1387)
T ss_pred             CccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhc
Confidence             358999998887 8888888 999999976 44443

>KOG2111|consensus

Probab=99.31  E-value=5.6e-10  Score=98.50  Aligned_cols=175  Identities=18%  Similarity=0.304  Sum_probs=122.8

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeCCCCE
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSGSR  319 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~  319 (479)
                      +.+.|||=...+++.++. ...+|.++.+.++  .++.. ..+.|.+|.......... .-......++.++.-..+...
T Consensus        75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~  150 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL  150 (346)
T ss_pred             ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence            478999966667776665 5678999999887  44443 467899998764322211 111111112222211111111


Q ss_pred             EEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCCc--E
Q psy8895         320 LITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPDN--I  395 (479)
Q Consensus       320 l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~--i  395 (479)
                      +                        ..-|-.-|.|+|-|+...+.  -..++.|++.|.+++++-+|.++|++|..+  |
T Consensus       151 L------------------------afPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLI  206 (346)
T KOG2111|consen  151 L------------------------AFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLI  206 (346)
T ss_pred             E------------------------EcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEE
Confidence            1                        12234457788888776544  356789999999999999999999999875  8


Q ss_pred             EEEeCCCCeEEeeecC--CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         396 KQWKCPEGKFIQNLPG--HNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      ++||..+|+.++.+..  .++.|.+++|||+. +|+..|+-|+++|+.++.
T Consensus       207 RIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  207 RIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             EEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence            9999999999988764  35689999999999 899999999999999875

>KOG2394|consensus

Probab=99.30  E-value=6.7e-11  Score=110.99  Aligned_cols=136  Identities=19%  Similarity=0.327  Sum_probs=92.8

Q ss_pred             CccEEEEEEcCCC-cEEEEEeCCCeEEEEECCC--------------Cce--------------EEEEecCCcCEEEEEE
Q psy8895         219 LGWVRCVAVEPGN-EWFATGSADKIIKVWDLAT--------------GKL--------------KLSLTGHVGSVRGLTV  269 (479)
Q Consensus       219 ~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~--------------~~~--------------~~~~~~h~~~v~~v~~  269 (479)
                      ...|+|+.|-|.+ ..++.+-.+|.+.++|...              +..              +..+.--++.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            3679999998854 4566677889999997531              100              1111112457889999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEe
Q psy8895         270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGS  349 (479)
Q Consensus       270 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs  349 (479)
                      +|||++|++.|.||.+||||..+.+..-..  ..--++..|+.|+|||+++++|+.|.                      
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~m--kSYFGGLLCvcWSPDGKyIvtGGEDD----------------------  354 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVM--KSYFGGLLCVCWSPDGKYIVTGGEDD----------------------  354 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHH--HhhccceEEEEEcCCccEEEecCCcc----------------------
Confidence            999999999999999999998754432111  12346799999999999876655554                      


Q ss_pred             CCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH  381 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~  381 (479)
                         .|.||.+...+.+..=++|++-|..++|+
T Consensus       355 ---LVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  355 ---LVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             ---eEEEEEeccceEEEeccccccceeeEeec
Confidence               45555555556666666666666666665

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.27  E-value=9.9e-10  Score=95.61  Aligned_cols=155  Identities=15%  Similarity=0.261  Sum_probs=103.9

Q ss_pred             EEEEcCCCcEEEEEeC----------CCeEEEEECCCC-ceEEEEec-CCcCEEEEEEcCCCCEEEE--EECCCcEEEEE
Q psy8895         224 CVAVEPGNEWFATGSA----------DKIIKVWDLATG-KLKLSLTG-HVGSVRGLTVSPRHPYLFS--CGDDRTVKCWD  289 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~----------d~~i~iWd~~~~-~~~~~~~~-h~~~v~~v~~~~~~~~l~s--~~~d~~i~~wd  289 (479)
                      .+.|+++|++|+.-..          -+...+|.++.. .....+.- ..++|.+++|+|++..++.  |..++.+.+||
T Consensus        10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd   89 (194)
T PF08662_consen   10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD   89 (194)
T ss_pred             EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence            4667787776543221          234566665322 22333332 3457999999999998654  44678999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      ++ .+.....    ....+..+.|+|+|++++.++..                      +..|.+.+||+++.+.+.+.+
T Consensus        90 ~~-~~~i~~~----~~~~~n~i~wsP~G~~l~~~g~~----------------------n~~G~l~~wd~~~~~~i~~~~  142 (194)
T PF08662_consen   90 VK-GKKIFSF----GTQPRNTISWSPDGRFLVLAGFG----------------------NLNGDLEFWDVRKKKKISTFE  142 (194)
T ss_pred             Cc-ccEeEee----cCCCceEEEECCCCCEEEEEEcc----------------------CCCcEEEEEECCCCEEeeccc
Confidence            96 2222221    23456789999999988766432                      234679999999888887764


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcC------C-cEEEEeCCCCeEEee
Q psy8895         370 NHKKSVRSVALHPTLYMFASASP------D-NIKQWKCPEGKFIQN  408 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~------d-~i~~w~~~~~~~~~~  408 (479)
                       | ..++.++|+|++++|+++..      | .+++|+. .|+++..
T Consensus       143 -~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~  185 (194)
T PF08662_consen  143 -H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYK  185 (194)
T ss_pred             -c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEe
Confidence             3 35789999999999988753      3 4899998 4665544

>KOG2321|consensus

Probab=99.24  E-value=3e-09  Score=100.85  Aligned_cols=185  Identities=16%  Similarity=0.310  Sum_probs=129.8

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC----C-----
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP----G-----  300 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----~-----  300 (479)
                      ...++..|+ ...|.=.++..|+.+..+..-.+.++++.+++-..+|++|+.||.+..||.+........    .     
T Consensus       145 scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  145 SCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP  223 (703)
T ss_pred             CccEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence            344444443 345666788999999888888889999999999889999999999999998754332110    0     


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC--CCceEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH--KKSVRSV  378 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~~~v~~i  378 (479)
                      .......+.++.|+.+|-.+                         +.|..+|.|.|||+++.+++.. +.|  .-+|..+
T Consensus       224 g~~~~~svTal~F~d~gL~~-------------------------aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l  277 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHV-------------------------AVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKL  277 (703)
T ss_pred             cccccCcceEEEecCCceeE-------------------------EeeccCCcEEEEEcccCCceee-cccCCccceeee
Confidence            01112236677777665544                         5566667778888887777654 334  4478888


Q ss_pred             EEeCC--CcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         379 ALHPT--LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       379 ~~~~~--~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .|.+.  ...+++.....+++||-.+|+..-.+..-.. ++.+|+-|++ +++++-+++.+.-|=+.
T Consensus       278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSKMHTYYIP  343 (703)
T ss_pred             cccccCCCceEEecchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCcceeEEcc
Confidence            88765  4556665555699999999988766654443 8889988776 99999888888766544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=4.1e-09  Score=104.04  Aligned_cols=171  Identities=18%  Similarity=0.176  Sum_probs=108.3

Q ss_pred             EEEEcCCCcEEEEE-eCCC--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC-CcEEEE--ECCCCCccc
Q psy8895         224 CVAVEPGNEWFATG-SADK--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD-RTVKCW--DLEYNKAPV  297 (479)
Q Consensus       224 ~~~~~~~g~~l~sg-s~d~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~~w--d~~~~~~~~  297 (479)
                      ..+|+|||+.|+.. +.++  .|.+||+.+++... +..+...+....|+|||+.++..+.+ +..++|  |+..+....
T Consensus       247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~  325 (429)
T PRK03629        247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR  325 (429)
T ss_pred             CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE
Confidence            46899999987754 4454  58889998887654 33344567788999999988776654 444555  555433211


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ..   ..........|+|+++.++....++                      ....|.+||+.+++. ..+... .....
T Consensus       326 lt---~~~~~~~~~~~SpDG~~Ia~~~~~~----------------------g~~~I~~~dl~~g~~-~~Lt~~-~~~~~  378 (429)
T PRK03629        326 IT---WEGSQNQDADVSSDGKFMVMVSSNG----------------------GQQHIAKQDLATGGV-QVLTDT-FLDET  378 (429)
T ss_pred             ee---cCCCCccCEEECCCCCEEEEEEccC----------------------CCceEEEEECCCCCe-EEeCCC-CCCCC
Confidence            11   1122334577888888876544321                      123477788876653 233321 22346


Q ss_pred             EEEeCCCcEEEEEcCCc----EEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         378 VALHPTLYMFASASPDN----IKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       378 i~~~~~~~~l~s~s~d~----i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      ..|+||+..++.++.+.    +.+++. +|.....+.+|.+.+...+++|
T Consensus       379 p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        379 PSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP  427 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence            78999999888777552    566676 5666677777877777777765

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=6.6e-09  Score=103.11  Aligned_cols=204  Identities=13%  Similarity=0.078  Sum_probs=132.1

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeC---CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCc--EE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSA---DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRT--VK  286 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~---d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--i~  286 (479)
                      +.+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.. .+..+.+.+...+|+|||+.++ +.+.++.  |.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            345677889999999999999888764   468999999988653 4455666777889999998775 5566655  66


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      +||++++......   ..........|+|+++.++..+...                      .+..|+++|+..++. .
T Consensus       274 ~~d~~~~~~~~Lt---~~~~~~~~~~~spDG~~i~f~s~~~----------------------g~~~Iy~~d~~g~~~-~  327 (435)
T PRK05137        274 TMDLRSGTTTRLT---DSPAIDTSPSYSPDGSQIVFESDRS----------------------GSPQLYVMNADGSNP-R  327 (435)
T ss_pred             EEECCCCceEEcc---CCCCccCceeEcCCCCEEEEEECCC----------------------CCCeEEEEECCCCCe-E
Confidence            7788765432211   1222344678899988876544211                      123567777765543 3


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC-C-----Cc
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD-N-----GT  435 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~-d-----g~  435 (479)
                      .+..+...+....|+|++..++..+.+    .+.+|+...+.. ..+.. ...+....|+||+ .|+..+. .     ..
T Consensus       328 ~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~  405 (435)
T PRK05137        328 RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPK  405 (435)
T ss_pred             EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcce
Confidence            343344556778899999888765432    377888755443 22322 2245677899998 5544333 2     25


Q ss_pred             EEEEecCCCe
Q psy8895         436 MCFWDWRTGY  445 (479)
Q Consensus       436 i~lWd~~~~~  445 (479)
                      +.+.|+..+.
T Consensus       406 L~~~dl~g~~  415 (435)
T PRK05137        406 LYTVDLTGRN  415 (435)
T ss_pred             EEEEECCCCc
Confidence            6777776543

>KOG0974|consensus

Probab=99.20  E-value=7.6e-10  Score=111.82  Aligned_cols=188  Identities=20%  Similarity=0.270  Sum_probs=141.4

Q ss_pred             EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC----cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV----GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~----~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      .+.-+.+.++.++.++.+.+||...+.....+..-.    .+..-+.++++.-++++|+--+.|.+|++...+.+.  ..
T Consensus        94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~--~l  171 (967)
T KOG0974|consen   94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI--RL  171 (967)
T ss_pred             chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc--ee
Confidence            344467889999999999999998776544433221    122333456777788899999999999987444333  22


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE-EEccCCCceEEEEE
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC-TLTNHKKSVRSVAL  380 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~-~~~~h~~~v~~i~~  380 (479)
                      .++++.|+.+.++.+|.++                         ++.|.|+++|+|++.+++.+. +.-+|...|..+.|
T Consensus       172 ~GHeG~iF~i~~s~dg~~i-------------------------~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~  226 (967)
T KOG0974|consen  172 KGHEGSIFSIVTSLDGRYI-------------------------ASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCF  226 (967)
T ss_pred             cccCCceEEEEEccCCcEE-------------------------EEEecCcceeeeecccccccCcccccccceeEEEEe
Confidence            4678899999998887765                         456667777777777776655 55589999999999


Q ss_pred             eCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCc-ceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         381 HPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHN-AIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       381 ~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~-~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      +|.  .+++++.| ..++|.. +++.+....+|. ..++.++..++. .++|++.||.+++||+..
T Consensus       227 ~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  227 LPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            998  78888888 5889965 455566778885 468999999887 899999999999999763

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=8.6e-09  Score=101.75  Aligned_cols=198  Identities=12%  Similarity=0.093  Sum_probs=125.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeC---CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCC--cEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSA---DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDR--TVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~---d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~--~i~~w  288 (479)
                      +..+...+.+.+|+|||+.|+..+.   +..|.+|++.+++... +....+.+....|+|||+.|+.. +.++  .|.+|
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~  272 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  272 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence            4446678899999999998886542   4579999998886533 22223334567999999988754 4444  58889


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT  367 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~  367 (479)
                      |+++++.....   .....+....|+|+++.++..+.+ +..                       .|.++|+.+++. ..
T Consensus       273 d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~-----------------------~Iy~~d~~~g~~-~~  325 (429)
T PRK03629        273 DLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSDQAGRP-----------------------QVYKVNINGGAP-QR  325 (429)
T ss_pred             ECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeCCCCCc-----------------------eEEEEECCCCCe-EE
Confidence            99765433221   122345678899999887655432 111                       233445554432 23


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCc---EEEE
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGT---MCFW  439 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~---i~lW  439 (479)
                      +..+........|+|++..++..+.+    .+.+||+.+++.. .+... .......++||| +|+..+.|+.   +.++
T Consensus       326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~  403 (429)
T PRK03629        326 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLV  403 (429)
T ss_pred             eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence            33333445678899999887665432    3788998877643 23321 123456789999 7777777764   6677


Q ss_pred             ecC
Q psy8895         440 DWR  442 (479)
Q Consensus       440 d~~  442 (479)
                      ++.
T Consensus       404 ~~~  406 (429)
T PRK03629        404 STD  406 (429)
T ss_pred             ECC
Confidence            764

>KOG1354|consensus

Probab=99.19  E-value=3.2e-09  Score=94.69  Aligned_cols=225  Identities=15%  Similarity=0.202  Sum_probs=153.3

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----eEEEEecCC------------cCEEEEEEcCCCC--EEEEE
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-----LKLSLTGHV------------GSVRGLTVSPRHP--YLFSC  279 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~--~l~s~  279 (479)
                      .+.+.++.|.-.|++|++|..+|.|-++.-....     ....++.|.            ..|..+.|.+++.  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            4568899999999999999999999999754322     234555564            2477888887654  45667


Q ss_pred             ECCCcEEEEECCCCCccc----------------------------------CCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895         280 GDDRTVKCWDLEYNKAPV----------------------------------QPGSMDSESGIFSMTFDNSGSRLITTEA  325 (479)
Q Consensus       280 ~~d~~i~~wd~~~~~~~~----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~  325 (479)
                      ..|++|++|.+.......                                  ....-.+...|.++.++.++..++++ .
T Consensus       105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D  183 (433)
T KOG1354|consen  105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D  183 (433)
T ss_pred             cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence            799999999875322111                                  00001123346678888877766654 5


Q ss_pred             CCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCcEEEEECCCCee----EEEEccC----
Q psy8895         326 DKTVKLYKEDDSAT--------------------------EESHPVITGSHDCTIRLWDLAAGKS----LCTLTNH----  371 (479)
Q Consensus       326 d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h----  371 (479)
                      |-.|.+|.+.....                          .....++-.|..|+|++-|++....    -+.+...    
T Consensus       184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~  263 (433)
T KOG1354|consen  184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS  263 (433)
T ss_pred             ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence            67899998653211                          1134577888999999999984311    1111111    


Q ss_pred             --------CCceEEEEEeCCCcEEEEEcCCcEEEEeC-CCCeEEeeecCCcc------------eE---EEEEEcCCC-E
Q psy8895         372 --------KKSVRSVALHPTLYMFASASPDNIKQWKC-PEGKFIQNLPGHNA------------II---NSICVNNEG-V  426 (479)
Q Consensus       372 --------~~~v~~i~~~~~~~~l~s~s~d~i~~w~~-~~~~~~~~~~~h~~------------~v---~~l~~~~~~-~  426 (479)
                              -++|..+.|++.|+++.+-+.-.+++||+ ...+.+.+.+-|..            .|   ...+++.++ .
T Consensus       264 ~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~  343 (433)
T KOG1354|consen  264 SRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSY  343 (433)
T ss_pred             chhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcce
Confidence                    13688899999999999998889999998 45566666655532            11   334667666 9


Q ss_pred             EEEEeCCCcEEEEecCCC
Q psy8895         427 LVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~  444 (479)
                      ++|||.....++++...|
T Consensus       344 v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  344 VMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EecccccceEEEecCCCC
Confidence            999999999999996655

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=8.5e-09  Score=102.17  Aligned_cols=200  Identities=17%  Similarity=0.103  Sum_probs=127.2

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCC--cEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDR--TVKC  287 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~i~~  287 (479)
                      .+..|...+.+.+|+|||+.|+..+.+   ..|.+||+.+++.. .+..+.+...+..|+|||+.++ +.+.++  .|.+
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            455667788999999999999887743   46999999888654 3333444455789999998775 455555  5999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      ||+.+++.....   ..........|+|+++.++..+.. +..                       .|+++|+.+++. .
T Consensus       277 ~d~~~g~~~~lt---~~~~~~~~~~~spDG~~l~f~sd~~g~~-----------------------~iy~~dl~~g~~-~  329 (433)
T PRK04922        277 MDLGSRQLTRLT---NHFGIDTEPTWAPDGKSIYFTSDRGGRP-----------------------QIYRVAASGGSA-E  329 (433)
T ss_pred             EECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCCCCc-----------------------eEEEEECCCCCe-E
Confidence            998765532211   112223467899999887765431 111                       255556655443 2


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC---CcEEE
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADN---GTMCF  438 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d---g~i~l  438 (479)
                      .+..+.......+|+|++..++..+.+    .+.+||..+++.. .+. +........++||+ .++..+.+   +.|.+
T Consensus       330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~  407 (433)
T PRK04922        330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAA  407 (433)
T ss_pred             EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            222233345578999999887765422    3889999877654 332 22234456899999 55554442   35677


Q ss_pred             EecCC
Q psy8895         439 WDWRT  443 (479)
Q Consensus       439 Wd~~~  443 (479)
                      ++...
T Consensus       408 ~~~~g  412 (433)
T PRK04922        408 VSTDG  412 (433)
T ss_pred             EECCC
Confidence            77754

>KOG1409|consensus

Probab=99.17  E-value=2.3e-09  Score=95.64  Aligned_cols=232  Identities=18%  Similarity=0.268  Sum_probs=167.8

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-CceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-GKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      +.+.||.+.|.....-|..+-+++.+.|.++|||--+. ++.--.+ ..-..+++++.+.++.+.|+.|-..|++.-+-+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            45679999999988889888999999999999996543 3321111 122457899999999999999988999988865


Q ss_pred             CCC--CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-----------CC---CeEEEEeCCCcE
Q psy8895         291 EYN--KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-----------ES---HPVITGSHDCTI  354 (479)
Q Consensus       291 ~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-----------~~---~~l~sgs~d~~v  354 (479)
                      ...  +.........+...+..+.|+-....+++.+.|..+...-.+...-.           ..   .....|...+.|
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv  177 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI  177 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence            321  22222223446677888999888889999998887765443322110           00   122334444444


Q ss_pred             EEEEC--CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE-EeeecCCcceEEEEEEcCCC-EEEE
Q psy8895         355 RLWDL--AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF-IQNLPGHNAIINSICVNNEG-VLVS  429 (479)
Q Consensus       355 ~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~-~~~~~~h~~~v~~l~~~~~~-~l~s  429 (479)
                      ..-.+  ..-.++.++.+|.+.+++++|.|...++.++..| .+.+||+.-.+. ...+.+|...|..++..+-- .|.+
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S  257 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS  257 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee
Confidence            43332  3346788899999999999999988888888877 599999976544 57789999999998876655 8999


Q ss_pred             EeCCCcEEEEecCCC
Q psy8895         430 GADNGTMCFWDWRTG  444 (479)
Q Consensus       430 g~~dg~i~lWd~~~~  444 (479)
                      ++.||.|.+||++..
T Consensus       258 ~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  258 CGEDGGIVVWNMNVK  272 (404)
T ss_pred             ccCCCeEEEEeccce
Confidence            999999999998753

>KOG1523|consensus

Probab=99.17  E-value=1.4e-09  Score=96.05  Aligned_cols=185  Identities=12%  Similarity=0.128  Sum_probs=129.2

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       260 h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      -..+|.|.+|++|...++.+-..+.|.||........... ...++...+..+.|.|..+.+                  
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI------------------   70 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI------------------   70 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce------------------
Confidence            4568999999999999999999999999987655522111 113455667778888765554                  


Q ss_pred             CCCCCeEEEEeCCCcEEEEECCC---CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE----Eeeec
Q psy8895         339 TEESHPVITGSHDCTIRLWDLAA---GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF----IQNLP  410 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~~---~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~----~~~~~  410 (479)
                             ++++.|+.-++|....   .++...+..+.++.+++.|+|....||.++... |.+|-+...+-    .+.-+
T Consensus        71 -------vtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk  143 (361)
T KOG1523|consen   71 -------VTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK  143 (361)
T ss_pred             -------eEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC
Confidence                   5556666666666632   245556778899999999999999999998875 66665432221    22334


Q ss_pred             CCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe--------------EecCCCCCceEEeeehhhhc
Q psy8895         411 GHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR--------------CVSGFPKPSVFFFFLAFSYL  473 (479)
Q Consensus       411 ~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~  473 (479)
                      .++..|+++.+.|++ .|++|+.|+.+|++.   .|.- -+.-+              -|+.+-..+++++.+.|++.
T Consensus       144 PirStv~sldWhpnnVLlaaGs~D~k~rVfS---ayIK-~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s  217 (361)
T KOG1523|consen  144 PIRSTVTSLDWHPNNVLLAAGSTDGKCRVFS---AYIK-GVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS  217 (361)
T ss_pred             ccccceeeeeccCCcceecccccCcceeEEE---Eeee-ccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence            577889999999999 889999999999987   2221 11111              13444456667777877776

>KOG1272|consensus

Probab=99.17  E-value=3.8e-11  Score=110.71  Aligned_cols=182  Identities=14%  Similarity=0.218  Sum_probs=141.4

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-------
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS-------  337 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-------  337 (479)
                      ..+.++.+|++++.|+.-|.+..+|+.+.+.....   .....|.++.|..+.++++++ ....+.+||....       
T Consensus       133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~GtElHClk~  208 (545)
T KOG1272|consen  133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---NVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGTELHCLKR  208 (545)
T ss_pred             eeeeecCCccEEEecCCccceeeeecccceeeeee---ehhhhhhhhhhhcchHHHHhh-hhceEEEecCCCcEEeehhh
Confidence            35688899999999999999999999887654332   223456777777666655554 2345555654321       


Q ss_pred             --------CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEE-cCCcEEEEeCCCCeEEee
Q psy8895         338 --------ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA-SPDNIKQWKCPEGKFIQN  408 (479)
Q Consensus       338 --------~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-s~d~i~~w~~~~~~~~~~  408 (479)
                              ..+...+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-.-.+-.| +.+.|.+|.....+.+-.
T Consensus       209 ~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvK  288 (545)
T KOG1272|consen  209 HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVK  288 (545)
T ss_pred             cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHH
Confidence                    12334568899999999999999999999887777888899999976655555 455699999999999888


Q ss_pred             ecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         409 LPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       409 ~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +..|.++|.++++.++| ++||.+.|..++|||+++-+.+.++
T Consensus       289 iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  289 ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             HHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            99999999999999999 8999999999999999986644433

>KOG4547|consensus

Probab=99.16  E-value=4e-09  Score=100.60  Aligned_cols=189  Identities=15%  Similarity=0.199  Sum_probs=127.8

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEecC---CcCEEEEEEc--------------------CCCCEEEEEECCCcE
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGH---VGSVRGLTVS--------------------PRHPYLFSCGDDRTV  285 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---~~~v~~v~~~--------------------~~~~~l~s~~~d~~i  285 (479)
                      |...++|....||.+|+||..+++....+...   .+...+..|.                    .|..+++-|-..|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            45679999999999999999998876665422   2333333332                    111233344444555


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      .+++...++.......-.+.+.+.++.+..                         ....+.+++.|+.+..|+....+..
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-------------------------~~~ciyS~~ad~~v~~~~~~~~~~~  137 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-------------------------RLGCIYSVGADLKVVYILEKEKVII  137 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccc-------------------------ccCceEecCCceeEEEEecccceee
Confidence            555544333222111112222222222111                         1234788899999999999998888


Q ss_pred             EEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCC-----C--EEEEEeCCCcEEE
Q psy8895         366 CTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNE-----G--VLVSGADNGTMCF  438 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-----~--~l~sg~~dg~i~l  438 (479)
                      +..+.....+.+++++||+.++++++ ..|++||+.+++.+.++.||.++|.++.|--+     |  +|.+...+.-+.+
T Consensus       138 ~~~~~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~  216 (541)
T KOG4547|consen  138 RIWKEQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV  216 (541)
T ss_pred             eeeccCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence            88888888999999999999988775 34999999999999999999999999998543     3  4555566677788


Q ss_pred             EecCC
Q psy8895         439 WDWRT  443 (479)
Q Consensus       439 Wd~~~  443 (479)
                      |-+..
T Consensus       217 w~v~~  221 (541)
T KOG4547|consen  217 WVVEK  221 (541)
T ss_pred             EEEEc
Confidence            87653

>KOG4497|consensus

Probab=99.15  E-value=2.6e-08  Score=88.44  Aligned_cols=224  Identities=14%  Similarity=0.165  Sum_probs=138.1

Q ss_pred             ccEEEEEEcCCCcEEEE-EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEWFAT-GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~s-gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ..|.-+-|..|..+++. ...|+.|.+|++...+....+..-...+.+++|||||+.++ +...|-.|.+|.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            34555666666666554 45677999999987777667776677899999999997655 56778899999987655332


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCC------------------------------------CeEEEEeCCCC----
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEAD------------------------------------KTVKLYKEDDS----  337 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------------------------------~~i~~~~~~~~----  337 (479)
                      ..   -....+-.++|+++|++.+..+..                                    ..+.+||....    
T Consensus       129 ~~---~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~  205 (447)
T KOG4497|consen  129 LP---HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY  205 (447)
T ss_pred             ec---ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence            21   112223446666666665554331                                    11222221100    


Q ss_pred             ------------CCCCCCeEEEEeCCCcEEEEECCCCee-----------------------------------------
Q psy8895         338 ------------ATEESHPVITGSHDCTIRLWDLAAGKS-----------------------------------------  364 (479)
Q Consensus       338 ------------~~~~~~~l~sgs~d~~v~iwd~~~~~~-----------------------------------------  364 (479)
                                  ..+.++.++.|+.|+.+|+.|--+.++                                         
T Consensus       206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~  285 (447)
T KOG4497|consen  206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE  285 (447)
T ss_pred             eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence                        012345677888887777754321110                                         


Q ss_pred             -------------------EEEEc------cCCCceEEEEEeCCCcEEEEEcCC--c-EEEEeCCCCeEEeeecCCcceE
Q psy8895         365 -------------------LCTLT------NHKKSVRSVALHPTLYMFASASPD--N-IKQWKCPEGKFIQNLPGHNAII  416 (479)
Q Consensus       365 -------------------~~~~~------~h~~~v~~i~~~~~~~~l~s~s~d--~-i~~w~~~~~~~~~~~~~h~~~v  416 (479)
                                         +..++      ...-.+--++|++|.+++++-.+.  + +-+||+..-++-- .--...+|
T Consensus       286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~pi  364 (447)
T KOG4497|consen  286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPI  364 (447)
T ss_pred             cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccce
Confidence                               11111      111245668999999999998776  3 8899987654422 22234467


Q ss_pred             EEEEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         417 NSICVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       417 ~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .+.-+.|.. .|+.+....++.+|...-..++
T Consensus       365 raf~WdP~~prL~vctg~srLY~W~psg~~~V  396 (447)
T KOG4497|consen  365 RAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV  396 (447)
T ss_pred             eEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence            788888877 6776666677888886654443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.6e-08  Score=99.92  Aligned_cols=189  Identities=16%  Similarity=0.125  Sum_probs=116.4

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd  289 (479)
                      .+..+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.++ +.+.++...+|.
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~  268 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT  268 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence            344567788999999999998877643   359999999886543 333445566889999999876 567788777775


Q ss_pred             C--CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         290 L--EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       290 ~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      +  ...... ..  ...........|+|+++.++..+. .+...+|                       ..++..++. .
T Consensus       269 ~d~~~~~~~-~l--t~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy-----------------------~~~~~~g~~-~  321 (427)
T PRK02889        269 VNADGSGLR-RL--TQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIY-----------------------RMPASGGAA-Q  321 (427)
T ss_pred             EECCCCCcE-EC--CCCCCCCcCeEEcCCCCEEEEEecCCCCcEEE-----------------------EEECCCCce-E
Confidence            4  332221 11  111223345779999988765442 2222222                       223333322 1


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                      .+..+.......+|+|+++.++..+.+    .+.+||..+++... +..+ .......++||+ .|+..+.
T Consensus       322 ~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~  390 (427)
T PRK02889        322 RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQ  390 (427)
T ss_pred             EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEe
Confidence            111122234467899999888765543    38999998876543 3222 233567899999 5555543

>KOG4190|consensus

Probab=99.12  E-value=2.4e-10  Score=107.56  Aligned_cols=207  Identities=18%  Similarity=0.277  Sum_probs=137.0

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-------CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-------GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVK  286 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~  286 (479)
                      .+.||+..|+.++--.+.+-+++++.|.+|++|.++.       ..+..+++.|+.+|.++.|-.+.+++++  .|+-|.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH  807 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH  807 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence            5679999999988666788899999999999999863       3477889999999999999998887765  588899


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEE-eCCCcEEEEECCCCeeE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG-SHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sg-s~d~~v~iwd~~~~~~~  365 (479)
                      +||.=-++...+.-.-..++....+..-++                       -+...++.| +...+|+++|.+..+-.
T Consensus       808 lWDPFigr~Laq~~dapk~~a~~~ikcl~n-----------------------v~~~iliAgcsaeSTVKl~DaRsce~~  864 (1034)
T KOG4190|consen  808 LWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-----------------------VDRHILIAGCSAESTVKLFDARSCEWT  864 (1034)
T ss_pred             eecccccchhHhhhcCcccCCCceeEeccc-----------------------Ccchheeeeccchhhheeeecccccce
Confidence            999744433221100011111111111111                       011222233 55667777777765433


Q ss_pred             EEE-----ccCCCceEEEEEeCCCcEEEEEc-CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEE-
Q psy8895         366 CTL-----TNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCF-  438 (479)
Q Consensus       366 ~~~-----~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~l-  438 (479)
                      ..+     .+....+++++.-+.+..++.+- .+.+.+.|..+|+.+..+..-......++-..|..|+....|-++-+ 
T Consensus       865 ~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~saldHslaVn  944 (1034)
T KOG4190|consen  865 CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSALDHSLAVN  944 (1034)
T ss_pred             eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcccceeEee
Confidence            332     34556789999999888777764 45699999999998776554433334444444556777777888877 


Q ss_pred             EecCCCe
Q psy8895         439 WDWRTGY  445 (479)
Q Consensus       439 Wd~~~~~  445 (479)
                      |..-.|.
T Consensus       945 Whaldgi  951 (1034)
T KOG4190|consen  945 WHALDGI  951 (1034)
T ss_pred             ehhcCCe
Confidence            7766553

>KOG2321|consensus

Probab=99.11  E-value=1.4e-08  Score=96.38  Aligned_cols=243  Identities=20%  Similarity=0.212  Sum_probs=150.1

Q ss_pred             CCCccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCC--cCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHV--GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +|....+.+..+|||+|+ ++|-.--.|++||+..-.+.  |..|.  ..|.-.-++.|...++---.|.+|.+-.- .+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence            456677889999999985 66777789999999876543  44453  34555555666544444456666554211 11


Q ss_pred             CcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTIR  355 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v~  355 (479)
                      .....    ........+.++. +...++.|+. ..|.-++++.+.                 ++...++++|..||.|.
T Consensus       126 ~hy~~----RIP~~GRDm~y~~~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE  200 (703)
T KOG2321|consen  126 RHYRT----RIPKFGRDMKYHKPSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE  200 (703)
T ss_pred             eeeee----ecCcCCccccccCCCccEEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence            11000    0011123444443 3333333333 334334433321                 12345788888899999


Q ss_pred             EEECCCCeeEEEEcc------CCC-----ceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEee-ecCCcceEEEEEEc
Q psy8895         356 LWDLAAGKSLCTLTN------HKK-----SVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQN-LPGHNAIINSICVN  422 (479)
Q Consensus       356 iwd~~~~~~~~~~~~------h~~-----~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~  422 (479)
                      .||.+....+.++..      |.+     .|+++.|+.++-.++.|+.. .+.++|+.+.+++.. -++-..+|..+.+.
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~  280 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQ  280 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccc
Confidence            999987665555432      322     49999999988777777655 699999988766532 22334567777775


Q ss_pred             CC--C-EEEEEeCCCcEEEEecCCCeEEEEEE----EeEecCCCCCceEEeee
Q psy8895         423 NE--G-VLVSGADNGTMCFWDWRTGYNFQRLQ----VRCVSGFPKPSVFFFFL  468 (479)
Q Consensus       423 ~~--~-~l~sg~~dg~i~lWd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  468 (479)
                      +.  . .++|. +...++|||-.+|.+...+.    +.-++.+|.+|-+|++.
T Consensus       281 ~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  281 DTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             ccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence            54  2 56654 45788999999998887763    33367888888777664

>KOG4497|consensus

Probab=99.10  E-value=7.5e-08  Score=85.62  Aligned_cols=213  Identities=16%  Similarity=0.200  Sum_probs=133.2

Q ss_pred             CCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC---------------
Q psy8895         218 HLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD---------------  281 (479)
Q Consensus       218 h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---------------  281 (479)
                      -...+.+++|+|||+ .|.+..-|-.|.+|.+.+.+.... +--+..+..++|+|||++.+.++.               
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W  168 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW  168 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence            346678899999995 456666788999999988765432 111234588899999988665542               


Q ss_pred             ---------------------CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE-----eCC
Q psy8895         282 ---------------------DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY-----KED  335 (479)
Q Consensus       282 ---------------------d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~-----~~~  335 (479)
                                           ++.+.+||---.....   ..+..-++-.+.|+|.++.+++|+.|+.+++.     +.-
T Consensus       169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f  245 (447)
T KOG4497|consen  169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPF  245 (447)
T ss_pred             HHHHhcCCCcccccCceECCCCcEEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeeh
Confidence                                 1233334321000000   11223457789999999999999999988763     210


Q ss_pred             CC----------C---------------------------------C---------------------------------
Q psy8895         336 DS----------A---------------------------------T---------------------------------  339 (479)
Q Consensus       336 ~~----------~---------------------------------~---------------------------------  339 (479)
                      ..          .                                 .                                 
T Consensus       246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la  325 (447)
T KOG4497|consen  246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA  325 (447)
T ss_pred             hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence            00          0                                 0                                 


Q ss_pred             --CCCCeEEEEe--CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc
Q psy8895         340 --EESHPVITGS--HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       340 --~~~~~l~sgs--~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~  414 (479)
                        .++..++|-.  .-+.+-+||++..+.-..+ ....+|++..|+|....|+.+..+ .+.+|...- .+.--.++.+-
T Consensus       326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg-~~~V~vP~~GF  403 (447)
T KOG4497|consen  326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG-PRVVGVPKKGF  403 (447)
T ss_pred             ecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCC-ceEEecCCCCc
Confidence              0111223322  2246889999865543333 345689999999998877777666 588898654 33333344446


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcE
Q psy8895         415 IINSICVNNEG-VLVSGADNGTM  436 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i  436 (479)
                      .|..+++.-+| .++-.+.|...
T Consensus       404 ~i~~l~W~~~g~~i~l~~kDafc  426 (447)
T KOG4497|consen  404 NIQKLQWLQPGEFIVLCGKDAFC  426 (447)
T ss_pred             eeeeEEecCCCcEEEEEcCCceE
Confidence            78888888666 77777777543

>KOG1409|consensus

Probab=99.09  E-value=1.6e-09  Score=96.54  Aligned_cols=85  Identities=28%  Similarity=0.626  Sum_probs=74.2

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      ..++.++.+|.+.+.+++|.+....|.+|..|..+.+||+--++- ...+.+|.+.|..+..-+.-+.+++++.|+.|-+
T Consensus       187 ~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~  266 (404)
T KOG1409|consen  187 CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVV  266 (404)
T ss_pred             CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEE
Confidence            345667899999999999999999999999999999999975543 4578899999999988888889999999999999


Q ss_pred             EECCCC
Q psy8895         288 WDLEYN  293 (479)
Q Consensus       288 wd~~~~  293 (479)
                      ||++..
T Consensus       267 w~mn~~  272 (404)
T KOG1409|consen  267 WNMNVK  272 (404)
T ss_pred             Eeccce
Confidence            998643

>KOG2139|consensus

Probab=99.07  E-value=1.9e-08  Score=90.37  Aligned_cols=195  Identities=16%  Similarity=0.229  Sum_probs=126.0

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc---
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP---  296 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---  296 (479)
                      .+..++|++.-.-++++..|-.|++||-++ ++...++ .....|.+++|-|.+..-++.+--+-|.+|.....-..   
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~  178 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN  178 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence            466788888666788999999999999876 3333333 23457999999997554444444456899975321100   


Q ss_pred             --------cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         297 --------VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       297 --------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                              .+.........|.++.|.++|..+++++.+                        |..|+|||..++..+.-.
T Consensus       179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g------------------------sssi~iWdpdtg~~~pL~  234 (445)
T KOG2139|consen  179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG------------------------SSSIMIWDPDTGQKIPLI  234 (445)
T ss_pred             cccccccchhheeCCCCceeeEEEEcCCCCEEeecccC------------------------cceEEEEcCCCCCccccc
Confidence                    011111223567788888887776655432                        567889998887655443


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecC
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~  442 (479)
                      ....+.++-+.||||+..|.+++-|. .++|+....-......-..+.|...+++|+|  .|.+.+  |.-++|.+.
T Consensus       235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s--gsp~lysl~  309 (445)
T KOG2139|consen  235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS--GSPRLYSLT  309 (445)
T ss_pred             ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc--CCceEEEEe
Confidence            33456788999999999888888775 7999654433222222334489999999999  345554  334445443

>KOG2139|consensus

Probab=99.06  E-value=6.7e-08  Score=87.00  Aligned_cols=217  Identities=17%  Similarity=0.213  Sum_probs=127.7

Q ss_pred             CCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCC----c----------eEEEEecCCcCEEEEEEcCCCCEEEEEE-C
Q psy8895         218 HLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATG----K----------LKLSLTGHVGSVRGLTVSPRHPYLFSCG-D  281 (479)
Q Consensus       218 h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~----~----------~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~  281 (479)
                      -...|.|++|.|.+ +.|+.|+..| |.||.....    +          .+....+| .+|++|.|.+||..+++++ .
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g  216 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFG  216 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence            35689999999964 5788888765 789976421    1          11223455 5899999999999999987 4


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      |..|.+||..++...-..  ....+++.-+.|+|++.+++.++-|+..++|+.......+...+-+|  --.--+|+-..
T Consensus       217 sssi~iWdpdtg~~~pL~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg--rvqtacWspcG  292 (445)
T KOG2139|consen  217 SSSIMIWDPDTGQKIPLI--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG--RVQTACWSPCG  292 (445)
T ss_pred             cceEEEEcCCCCCccccc--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC--ceeeeeecCCC
Confidence            579999999876543221  12346688899999999999998888888886655433322222111  11222454443


Q ss_pred             CeeEEEEccCCCceEEEEEeCCCcEEE-EEcCCc-EEEEeCCCCeEEeeecC---CcceEEEEEEcCCC-EEEEEeCCC-
Q psy8895         362 GKSLCTLTNHKKSVRSVALHPTLYMFA-SASPDN-IKQWKCPEGKFIQNLPG---HNAIINSICVNNEG-VLVSGADNG-  434 (479)
Q Consensus       362 ~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~s~d~-i~~w~~~~~~~~~~~~~---h~~~v~~l~~~~~~-~l~sg~~dg-  434 (479)
                      ...+....+ +..+.++.|+.....+. .++... ..+-|+..-.   ...+   -.+...+++++|.| +||+--..+ 
T Consensus       293 sfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  293 SFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             CEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            333333332 23445555543322222 122222 2222322110   0111   13467889999998 777654432 


Q ss_pred             -------cEEEEecCCC
Q psy8895         435 -------TMCFWDWRTG  444 (479)
Q Consensus       435 -------~i~lWd~~~~  444 (479)
                             .|.+||.+.-
T Consensus       369 ~v~~~k~~i~~fdtr~s  385 (445)
T KOG2139|consen  369 FVLLCKLHISRFDTRKS  385 (445)
T ss_pred             hhhhhhhhhhhhccccc
Confidence                   3567776543

>KOG0974|consensus

Probab=99.04  E-value=3.6e-09  Score=107.09  Aligned_cols=147  Identities=24%  Similarity=0.446  Sum_probs=115.7

Q ss_pred             EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895         226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      .++++.-++++|+.-+.|.+|+...-.....+.+|.+.|..+.++.||++++++|+|.++++|++++.+... .....+.
T Consensus       140 g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHs  218 (967)
T KOG0974|consen  140 GDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHS  218 (967)
T ss_pred             eccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-ccccccc
Confidence            346677789999999999999987433334689999999999999999999999999999999998766543 2234567


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC-CceEEEEEeCCC
Q psy8895         306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK-KSVRSVALHPTL  384 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~  384 (479)
                      .+++.+.+.|+  .                         ++|++.|.+.++|+.+ ++.+..+++|. ..|+.++..++.
T Consensus       219 aRvw~~~~~~n--~-------------------------i~t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~  270 (967)
T KOG0974|consen  219 ARVWACCFLPN--R-------------------------IITVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV  270 (967)
T ss_pred             ceeEEEEeccc--e-------------------------eEEeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc
Confidence            77888887775  3                         5677777778888654 34455677775 468999999998


Q ss_pred             cEEEEEcCCc-EEEEeCC
Q psy8895         385 YMFASASPDN-IKQWKCP  401 (479)
Q Consensus       385 ~~l~s~s~d~-i~~w~~~  401 (479)
                      ....++.+|. +++|+..
T Consensus       271 ~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  271 IIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             eEEEeeccCcchhhhhhh
Confidence            8888888885 9999864

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.04  E-value=6.3e-10  Score=69.34  Aligned_cols=38  Identities=39%  Similarity=0.749  Sum_probs=35.2

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEe
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD   61 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd   61 (479)
                      ++++++.+|.++|++|+|+|++++|+|||.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35677889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=4.7e-08  Score=96.93  Aligned_cols=178  Identities=17%  Similarity=0.095  Sum_probs=116.0

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  317 (479)
                      ..|.+||...+ ....+..+...+.+.+|+||++.++..+.+   ..|.+||+..++.....   ...+......|+|++
T Consensus       184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG  259 (433)
T PRK04922        184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDG  259 (433)
T ss_pred             EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCC
Confidence            46889998644 334556677789999999999998877643   46999999765542211   112233467899998


Q ss_pred             CEEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---
Q psy8895         318 SRLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---  393 (479)
Q Consensus       318 ~~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---  393 (479)
                      +.++.. +.++                       +..|++||+.+++. ..+..+.......+|+|++..++..++.   
T Consensus       260 ~~l~~~~s~~g-----------------------~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~  315 (433)
T PRK04922        260 RRLALTLSRDG-----------------------NPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR  315 (433)
T ss_pred             CEEEEEEeCCC-----------------------CceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCC
Confidence            876532 2211                       23588888887654 3454555555778999999877766643   


Q ss_pred             -cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC-C--cEEEEecCCCeEE
Q psy8895         394 -NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADN-G--TMCFWDWRTGYNF  447 (479)
Q Consensus       394 -~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d-g--~i~lWd~~~~~~~  447 (479)
                       .+.+++..+++... +..+.......+++||| .|+..+.+ +  .|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence             26677776665432 22233334467899999 66554433 2  5899999887643

>KOG3881|consensus

Probab=99.01  E-value=1.1e-08  Score=92.81  Aligned_cols=162  Identities=23%  Similarity=0.268  Sum_probs=119.2

Q ss_pred             cEEEEEEcCCC-cEEEEEeCC--CeEEEEECCCCceEEEEecC---------CcCEEEEEEcCC--CCEEEEEECCCcEE
Q psy8895         221 WVRCVAVEPGN-EWFATGSAD--KIIKVWDLATGKLKLSLTGH---------VGSVRGLTVSPR--HPYLFSCGDDRTVK  286 (479)
Q Consensus       221 ~v~~~~~~~~g-~~l~sgs~d--~~i~iWd~~~~~~~~~~~~h---------~~~v~~v~~~~~--~~~l~s~~~d~~i~  286 (479)
                      .+..+.-.+.. ..+++|+..  ..++|||+...+.+++-+.-         .-+++++.|-+.  ...++++..-+.++
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR  229 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVR  229 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEE
Confidence            34445545544 455668888  88999999887544332111         114567788877  77899999999999


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      +||++.++.++..... .+..+.++...|+++.+                         ++|..-+.+..+|++.++.+.
T Consensus       230 ~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~I-------------------------y~gn~~g~l~~FD~r~~kl~g  283 (412)
T KOG3881|consen  230 LYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFI-------------------------YTGNTKGQLAKFDLRGGKLLG  283 (412)
T ss_pred             EecCcccCcceeEecc-ccCcceeeeecCCCcEE-------------------------EEecccchhheecccCceeec
Confidence            9999877665443222 24567777777776654                         455566777888888888776


Q ss_pred             E-EccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee
Q psy8895         367 T-LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN  408 (479)
Q Consensus       367 ~-~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~  408 (479)
                      . +++-.++|++|..+|..+++++++-|. ++|+|..+.++++.
T Consensus       284 ~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  284 CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             cccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            6 888899999999999999999999996 99999988666543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.98  E-value=3.2e-07  Score=90.88  Aligned_cols=199  Identities=18%  Similarity=0.122  Sum_probs=123.8

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCC--cEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDR--TVKC  287 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~--~i~~  287 (479)
                      .+..+...+.+.+|+|||++|+.++.+   ..|.+||+.+++... +..+...+.+.+|+||++.++. .+.++  .|.+
T Consensus       184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~  262 (417)
T TIGR02800       184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV  262 (417)
T ss_pred             EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence            344566678889999999999887654   479999999886543 3345556677899999987764 44444  5888


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT  367 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~  367 (479)
                      ||+.+++.....   ..........|+|+++.++..+..+                      ....|.++|+.+++. ..
T Consensus       263 ~d~~~~~~~~l~---~~~~~~~~~~~s~dg~~l~~~s~~~----------------------g~~~iy~~d~~~~~~-~~  316 (417)
T TIGR02800       263 MDLDGKQLTRLT---NGPGIDTEPSWSPDGKSIAFTSDRG----------------------GSPQIYMMDADGGEV-RR  316 (417)
T ss_pred             EECCCCCEEECC---CCCCCCCCEEECCCCCEEEEEECCC----------------------CCceEEEEECCCCCE-EE
Confidence            898765432211   1112223457788887766543221                      012466667665543 33


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC---cEEEE
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG---TMCFW  439 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg---~i~lW  439 (479)
                      +..+...+....|+|++..++.++.+    .+.+||..++... .+... .......++|++ .|+..+.++   .+.+.
T Consensus       317 l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~  394 (417)
T TIGR02800       317 LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLV  394 (417)
T ss_pred             eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence            43445567788999999877766554    4788888775442 22222 123445789988 666555443   34444


Q ss_pred             ec
Q psy8895         440 DW  441 (479)
Q Consensus       440 d~  441 (479)
                      +.
T Consensus       395 ~~  396 (417)
T TIGR02800       395 ST  396 (417)
T ss_pred             EC
Confidence            43

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547|consensus

Probab=98.98  E-value=2.2e-08  Score=95.71  Aligned_cols=172  Identities=16%  Similarity=0.244  Sum_probs=125.1

Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccCCCCCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC--CCCCCCCCCeEEE
Q psy8895         271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKE--DDSATEESHPVIT  347 (479)
Q Consensus       271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~--~~~~~~~~~~l~s  347 (479)
                      |...+++....||.+++||...++....+.... ..+...+..|.     +......  .+.-..  ......+...++-
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~-----L~~~~s~--~k~~~~~~~~~~s~~t~~lvl   75 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG-----LSADYSP--MKWLSLEKAKKASLDTSMLVL   75 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE-----EEeccch--HHHHhHHHHhhccCCceEEEe
Confidence            445688888999999999998776544332211 12233334433     1111110  000000  0111223346778


Q ss_pred             EeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      |...|.|.+|++..++.-+.+.  +|.+.|.++..+.+..+|-+++.| .+..|+..+.+....+.+.+..+.++|++||
T Consensus        76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence            8889999999999998877775  699999999999888888888887 5999999999999999999999999999999


Q ss_pred             C-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         425 G-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      + +|++++  +.|++||+++++.++.++
T Consensus       156 ~~~l~~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  156 GKILLTAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             CCEEEecc--ceEEEEEccCceEEEEec
Confidence            8 888887  899999999999988763

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=1.7e-07  Score=92.98  Aligned_cols=176  Identities=14%  Similarity=0.067  Sum_probs=116.8

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD---DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  317 (479)
                      ..|.+||.... ....+..|...+.+.+|+|||+.|+..+.   +..|.+||+++++.....   ...+.+....|+|+|
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG---NFPGMTFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee---cCCCcccCcEECCCC
Confidence            47888887544 34556678889999999999998887653   468999999776542211   123345677899999


Q ss_pred             CEEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---
Q psy8895         318 SRLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---  393 (479)
Q Consensus       318 ~~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---  393 (479)
                      +.++.. +.++                       ...|.+||+.+++. ..+..+........|+||+..++..++.   
T Consensus       258 ~~la~~~~~~g-----------------------~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~  313 (435)
T PRK05137        258 RKVVMSLSQGG-----------------------NTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGS  313 (435)
T ss_pred             CEEEEEEecCC-----------------------CceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCC
Confidence            876533 2221                       23466778776644 4455566666788999999877766543   


Q ss_pred             -cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC---CcEEEEecCCCe
Q psy8895         394 -NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADN---GTMCFWDWRTGY  445 (479)
Q Consensus       394 -~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d---g~i~lWd~~~~~  445 (479)
                       .+.++|...++.. .+..+...+....++||+ .|+..+.+   ..|.+||..++.
T Consensus       314 ~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~  369 (435)
T PRK05137        314 PQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG  369 (435)
T ss_pred             CeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc
Confidence             3788887665543 333334456667899998 66655433   357888876553

>KOG3914|consensus

Probab=98.97  E-value=1.3e-08  Score=92.94  Aligned_cols=167  Identities=15%  Similarity=0.234  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCe
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP  344 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~  344 (479)
                      ..+..++.+++++.+-.++.+.+++.........      .....++.-.+.  .+.....+.++.+.+           
T Consensus        66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k------l~~~~~v~~~~~--ai~~~~~~~sv~v~d-----------  126 (390)
T KOG3914|consen   66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK------LLDVSCVPKRPT--AISFIREDTSVLVAD-----------  126 (390)
T ss_pred             cccccCCCceEEEEEeCCCceEEEEEecCCCcce------eeeEeecccCcc--eeeeeeccceEEEEe-----------
Confidence            3445566777777776667777777654332100      001112211111  111122222333222           


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-ecCCcceEEEEEEc
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-LPGHNAIINSICVN  422 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-~~~h~~~v~~l~~~  422 (479)
                        ..+....+.+|....+.+.. +.+|-+.+..++++||.+.+.++..|. |++-..+..-.+.. +.||+..|..+++-
T Consensus       127 --kagD~~~~di~s~~~~~~~~-~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  127 --KAGDVYSFDILSADSGRCEP-ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             --ecCCceeeeeecccccCcch-hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence              22334456666666544433 348999999999999999999998875 88866655444444 56899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         423 NEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       423 ~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++..|+|||.|+++++||+.+|.++....++
T Consensus       204 ~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~  234 (390)
T KOG3914|consen  204 DNYLLLSGSGDKTLRLWDITSGKLLDTCDLS  234 (390)
T ss_pred             cCceeeecCCCCcEEEEecccCCcccccchh
Confidence            9999999999999999999999888665443

>KOG0280|consensus

Probab=98.95  E-value=3.1e-08  Score=86.71  Aligned_cols=200  Identities=18%  Similarity=0.235  Sum_probs=127.0

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--EEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLK--LSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~--~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ..++.|++.+..++++-.+|.+.+=+.......  +.++.|+-+++...|+...+ .+.+||+|+.+..||++..+.-..
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            456778888888999888898885555555443  37899999999999986544 677999999999999983331111


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEEEEccCCCceEE
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLCTLTNHKKSVRS  377 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~  377 (479)
                      ....-+..+|.++.-+|.                        ....+++|+.|-.|++||.+. ++++..-+ -.+.|+.
T Consensus       204 ~n~kvH~~GV~SI~ss~~------------------------~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWR  258 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPP------------------------KPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWR  258 (339)
T ss_pred             ecceeeecceEEEecCCC------------------------CCceEEEeccccceeeeehhcccCccccCc-cccceEE
Confidence            111224455555554432                        234578888888888888873 55554322 2367888


Q ss_pred             EEEeCCC--cEEEEEcCCcEEEEeCCCC--e---EEeeecCCcceEEEEEEc-CCCEEEEEe-CCCcEE-EEecCCCeE
Q psy8895         378 VALHPTL--YMFASASPDNIKQWKCPEG--K---FIQNLPGHNAIINSICVN-NEGVLVSGA-DNGTMC-FWDWRTGYN  446 (479)
Q Consensus       378 i~~~~~~--~~l~s~s~d~i~~w~~~~~--~---~~~~~~~h~~~v~~l~~~-~~~~l~sg~-~dg~i~-lWd~~~~~~  446 (479)
                      +..+|.-  .+|+++-.++.++-+...+  +   .....+.|.+-+..-.+. .++.|+|++ .|+.++ +|-.-|+++
T Consensus       259 i~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~  337 (339)
T KOG0280|consen  259 IKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP  337 (339)
T ss_pred             EEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence            8888853  4556666666666665443  2   223334555433333332 345688865 566655 776656543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=8.2e-08  Score=94.90  Aligned_cols=178  Identities=15%  Similarity=0.081  Sum_probs=108.6

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  317 (479)
                      ..|.++|.. +.....+..+...+.+.+|+|||+.++..+.+   ..|.+||+.+++.....   ...+......|+|++
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG  251 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDG  251 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCC
Confidence            457777764 44444555677789999999999998876643   46999999876543211   122344578899999


Q ss_pred             CEEEE-EeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC--c
Q psy8895         318 SRLIT-TEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD--N  394 (479)
Q Consensus       318 ~~l~~-~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--~  394 (479)
                      +.++. .+.++...                       |+++|+..+. ...+..+........|+||+..++..++.  .
T Consensus       252 ~~la~~~~~~g~~~-----------------------Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~  307 (427)
T PRK02889        252 RTLAVALSRDGNSQ-----------------------IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA  307 (427)
T ss_pred             CEEEEEEccCCCce-----------------------EEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC
Confidence            87753 33333222                       2233443332 34454455556678899999877765543  3


Q ss_pred             EEEE--eCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC---cEEEEecCCCeEE
Q psy8895         395 IKQW--KCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG---TMCFWDWRTGYNF  447 (479)
Q Consensus       395 i~~w--~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg---~i~lWd~~~~~~~  447 (479)
                      ..+|  +..+++.. .+..+........++||| .|+..+.++   .|.+||+.+++..
T Consensus       308 ~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        308 PQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             cEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence            4444  44444432 222222233456899998 676655544   6999999988643

>KOG1354|consensus

Probab=98.95  E-value=1.4e-07  Score=84.37  Aligned_cols=162  Identities=17%  Similarity=0.279  Sum_probs=107.5

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-c--eEEEEecCC-----cCEEEEEEcCCCC-EEEEEECCCcEE
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-K--LKLSLTGHV-----GSVRGLTVSPRHP-YLFSCGDDRTVK  286 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~--~~~~~~~h~-----~~v~~v~~~~~~~-~l~s~~~d~~i~  286 (479)
                      ..|+--|.+++++.|++.++|+. |-.|.+|++.-- +  -+..++.+.     .-|++..|+|... +++-.+..|+|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            46888999999999999999874 678999998632 1  123334443     3578889999754 556678889999


Q ss_pred             EEECCCCCcc------cCC--------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC
Q psy8895         287 CWDLEYNKAP------VQP--------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC  352 (479)
Q Consensus       287 ~wd~~~~~~~------~~~--------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~  352 (479)
                      +-|++....-      ...        ...+.-..|..+.|+++|+++++-..                          -
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--------------------------l  293 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--------------------------L  293 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--------------------------c
Confidence            9999733211      000        00111245778999999888765322                          2


Q ss_pred             cEEEEEC-CCCeeEEEEccCCC------------ce---EEEEEeCCCcEEEEEcCCc-EEEEeCCCCe
Q psy8895         353 TIRLWDL-AAGKSLCTLTNHKK------------SV---RSVALHPTLYMFASASPDN-IKQWKCPEGK  404 (479)
Q Consensus       353 ~v~iwd~-~~~~~~~~~~~h~~------------~v---~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~  404 (479)
                      +|++||+ ...+++.+.+-|..            .|   -.++|+.+.....+|+..+ .++++...|.
T Consensus       294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence            5666766 34456666655532            22   3467888888888888776 8899966553

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.93  E-value=4.7e-06  Score=78.43  Aligned_cols=223  Identities=17%  Similarity=0.155  Sum_probs=137.9

Q ss_pred             EcCCCcEEEEEeC----------CCeEEEEECCCCceEEEEecCCc-------CEEEEEEcCCCCEEEEEE--CCCcEEE
Q psy8895         227 VEPGNEWFATGSA----------DKIIKVWDLATGKLKLSLTGHVG-------SVRGLTVSPRHPYLFSCG--DDRTVKC  287 (479)
Q Consensus       227 ~~~~g~~l~sgs~----------d~~i~iWd~~~~~~~~~~~~h~~-------~v~~v~~~~~~~~l~s~~--~d~~i~~  287 (479)
                      ++|||+.|+.+..          +..|.+||..+++.+..+.--..       .-..++++|||++++...  .+..+.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            8899998766655          78999999999999877763211       234789999999988664  3789999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEE--------EeCCCCEEEEE-eCCC-----eEEEEeCCC------C-CCC-CCCeE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMT--------FDNSGSRLITT-EADK-----TVKLYKEDD------S-ATE-ESHPV  345 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~-~~d~-----~i~~~~~~~------~-~~~-~~~~l  345 (479)
                      .|++..+...+...   ..+..-..        ...++..+... ..+|     +..+++.+.      . ... ++..+
T Consensus       133 vD~~~~kvv~ei~v---p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~  209 (352)
T TIGR02658       133 VDLEGKAFVRMMDV---PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV  209 (352)
T ss_pred             EECCCCcEEEEEeC---CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence            99987765432211   11111111        11233322211 1112     122333211      1 011 34445


Q ss_pred             EEEeCCCcEEEEECCCC-----eeEEEEcc-------CCCceEEEEEeCCCcEEEE-Ec----------CCcEEEEeCCC
Q psy8895         346 ITGSHDCTIRLWDLAAG-----KSLCTLTN-------HKKSVRSVALHPTLYMFAS-AS----------PDNIKQWKCPE  402 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~-----~~~~~~~~-------h~~~v~~i~~~~~~~~l~s-~s----------~d~i~~w~~~~  402 (479)
                      ....+ |+|.+.|+...     +....+..       ..+...-++++|++..+.. ..          .+.+.++|..+
T Consensus       210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t  288 (352)
T TIGR02658       210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT  288 (352)
T ss_pred             EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence            45444 99999996432     33333211       1233455999998765544 21          13589999999


Q ss_pred             CeEEeeecCCcceEEEEEEcCCC--EEE-EEeCCCcEEEEecCCCeEEEEE-EEeE
Q psy8895         403 GKFIQNLPGHNAIINSICVNNEG--VLV-SGADNGTMCFWDWRTGYNFQRL-QVRC  454 (479)
Q Consensus       403 ~~~~~~~~~h~~~v~~l~~~~~~--~l~-sg~~dg~i~lWd~~~~~~~~~~-~~~~  454 (479)
                      ++.+..+.- ...+..+++++|+  .|+ +-..++.|.+.|..+++.++++ ++..
T Consensus       289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg~  343 (352)
T TIGR02658       289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLGR  343 (352)
T ss_pred             CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCCC
Confidence            999888764 2368899999998  344 4446889999999999988877 5443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.91  E-value=4.1e-07  Score=87.37  Aligned_cols=194  Identities=18%  Similarity=0.190  Sum_probs=126.5

Q ss_pred             cEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEE
Q psy8895         232 EWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFS  310 (479)
Q Consensus       232 ~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~  310 (479)
                      +++ ++-..++.|.+.|..+.+.+..+......-..+.++||+++++.++.|+.|.++|+.+.+...+.   ........
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---~~G~~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---KVGGNPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE---E-SSEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE---ecCCCcce
Confidence            444 55667899999999999999998865444455789999999999999999999999887654332   22334567


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-------CCceEEEEEeCC
Q psy8895         311 MTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-------KKSVRSVALHPT  383 (479)
Q Consensus       311 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-------~~~v~~i~~~~~  383 (479)
                      ++++++|++++++                        ...++.+.++|.++.++++++...       ...+.+|..+|.
T Consensus        83 i~~s~DG~~~~v~------------------------n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~  138 (369)
T PF02239_consen   83 IAVSPDGKYVYVA------------------------NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG  138 (369)
T ss_dssp             EEE--TTTEEEEE------------------------EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred             EEEcCCCCEEEEE------------------------ecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence            8888888877644                        334678888999988888876532       346788888898


Q ss_pred             CcEEEEEcCC--cEEEEeCCCCeEE--eeecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         384 LYMFASASPD--NIKQWKCPEGKFI--QNLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       384 ~~~l~s~s~d--~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ...++.+-.+  .|-+-|....+.+  ..+. .........++|++ + +++...+..|-++|.+++.....+...
T Consensus       139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g  213 (369)
T PF02239_consen  139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTG  213 (369)
T ss_dssp             SSEEEEEETTTTEEEEEETTTSSCEEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred             CCEEEEEEccCCeEEEEEeccccccceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEeecc
Confidence            8877766655  3555576554322  2222 23345567889998 4 455566779999999999777666553

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.88  E-value=1.2e-06  Score=87.04  Aligned_cols=200  Identities=15%  Similarity=0.090  Sum_probs=119.6

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCC--cEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDR--TVKC  287 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~--~i~~  287 (479)
                      .+..+...+...+|+|||+.|+..+.+   ..|.+||+.+++... +....+.+....|+|||+.++ +.+.++  .|.+
T Consensus       193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~  271 (430)
T PRK00178        193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV  271 (430)
T ss_pred             EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence            344566788999999999998876644   368899999886543 333334455689999999876 444454  6888


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT  367 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~  367 (479)
                      +|+.+++.....   ..........|+|+++.++..+...                      .+..|+++|+.+++... 
T Consensus       272 ~d~~~~~~~~lt---~~~~~~~~~~~spDg~~i~f~s~~~----------------------g~~~iy~~d~~~g~~~~-  325 (430)
T PRK00178        272 MDLASRQLSRVT---NHPAIDTEPFWGKDGRTLYFTSDRG----------------------GKPQIYKVNVNGGRAER-  325 (430)
T ss_pred             EECCCCCeEEcc---cCCCCcCCeEECCCCCEEEEEECCC----------------------CCceEEEEECCCCCEEE-
Confidence            898765432211   1122234567888888766543211                      01246666666554322 


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe-CCCc--EEEE
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA-DNGT--MCFW  439 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg~--i~lW  439 (479)
                      +...........|+|++..++..+.+    .+.++|..+++... +.. ........++||| .++..+ .++.  +.+.
T Consensus       326 lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~  403 (430)
T PRK00178        326 VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLV  403 (430)
T ss_pred             eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEE
Confidence            21112233457899999887765532    37788988776432 221 1122245789998 554433 3443  5555


Q ss_pred             ecC
Q psy8895         440 DWR  442 (479)
Q Consensus       440 d~~  442 (479)
                      ++.
T Consensus       404 ~~~  406 (430)
T PRK00178        404 SIN  406 (430)
T ss_pred             ECC
Confidence            654

>KOG4190|consensus

Probab=98.86  E-value=2.6e-08  Score=94.19  Aligned_cols=218  Identities=12%  Similarity=0.211  Sum_probs=137.6

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-----cCCcCEEEEEEcCCCCEEEE-EECCCcEEEEE
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-----GHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWD  289 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd  289 (479)
                      ..|..+|.++.|..+-++++++  |+-|.+||.--++.+..+.     +..+-|.++.-. +...++. |+...+++++|
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeee
Confidence            4577888888888777777765  7889999987776654221     122334444321 3334444 47889999999


Q ss_pred             CCCCCcccC--C-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC----------------CCCeEEEEeC
Q psy8895         290 LEYNKAPVQ--P-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------ESHPVITGSH  350 (479)
Q Consensus       290 ~~~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----------------~~~~l~sgs~  350 (479)
                      .+.....-+  . ....++.-+.+++..+.|+.++.+-..|.|.+.|.++...-                ..+.++....
T Consensus       858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaapsdq~L~~sal  937 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAPSDQALAQSAL  937 (1034)
T ss_pred             cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCchhHHHHhhcc
Confidence            886654321  1 11334566889999999999999999999988887765421                1234566777


Q ss_pred             CCcEEE-EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC-Ce---EEeee--cCCcceEEEEEEc
Q psy8895         351 DCTIRL-WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE-GK---FIQNL--PGHNAIINSICVN  422 (479)
Q Consensus       351 d~~v~i-wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~-~~---~~~~~--~~h~~~v~~l~~~  422 (479)
                      |.++.+ |-...+....+.+....+..-+  -..++.++++..++ +.+|-... ..   .+..+  ..-++..++++..
T Consensus       938 dHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~L 1015 (1034)
T KOG4190|consen  938 DHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPL 1015 (1034)
T ss_pred             cceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeec
Confidence            888888 8877777666665443332111  23466777887776 56664211 00   01111  1234567777777


Q ss_pred             CCC-EEEEEeCCCcEEE
Q psy8895         423 NEG-VLVSGADNGTMCF  438 (479)
Q Consensus       423 ~~~-~l~sg~~dg~i~l  438 (479)
                      |-+ .++.|.+.|.|.+
T Consensus      1016 PLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1016 PLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cccchhhccCCCCceee
Confidence            765 5667888888765

>KOG2111|consensus

Probab=98.85  E-value=6.3e-07  Score=79.58  Aligned_cols=109  Identities=15%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             CCcEEEE-EeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEECCCc-EEEEECCCCCcccCCCCCCCC
Q psy8895         230 GNEWFAT-GSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT-VKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       230 ~g~~l~s-gs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      +..+||. |-.-|.|+|-|+...+.  ...+.+|.+.|.|++++.+|.+++|+|..|+ ||+||.+++....+.......
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~  226 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR  226 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch
Confidence            3344544 44568999999976544  4688999999999999999999999999985 789999988766554444445


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      ..|++++|+|+..++++++..|++.+|.+....
T Consensus       227 A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  227 ADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             heEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            679999999999999999999999999887644

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=1.8e-06  Score=85.77  Aligned_cols=203  Identities=18%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCC-C--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCc--EEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSAD-K--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRT--VKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d-~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~--i~~w  288 (479)
                      +..+...+.+..|+|||+.|+..+.+ +  .|.+||+.+++... +....+.....+|+|||+.++. .+.++.  |.++
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            34456678889999999988876543 2  58888998876532 2222233346789999998764 556664  7777


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      |+++++.....   ..........|+|+++.++..+..+                      ....|.++|+.+++... +
T Consensus       292 dl~tg~~~~lt---~~~~~~~~p~wSpDG~~I~f~s~~~----------------------g~~~Iy~~dl~~g~~~~-L  345 (448)
T PRK04792        292 DIATKALTRIT---RHRAIDTEPSWHPDGKSLIFTSERG----------------------GKPQIYRVNLASGKVSR-L  345 (448)
T ss_pred             ECCCCCeEECc---cCCCCccceEECCCCCEEEEEECCC----------------------CCceEEEEECCCCCEEE-E
Confidence            88765432211   1122345678899888776543211                      01245666776655332 2


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE-EEeCCCc--EEEEe
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV-SGADNGT--MCFWD  440 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~~dg~--i~lWd  440 (479)
                      ..........+|+|++..++..+.+    .|.++|..+++... +.... ......++||+ .|+ +...++.  +.+++
T Consensus       346 t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~  423 (448)
T PRK04792        346 TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVS  423 (448)
T ss_pred             ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            1122223456899999877665432    25567877776432 22221 12234789998 444 4444554  55666


Q ss_pred             cCCCeEE
Q psy8895         441 WRTGYNF  447 (479)
Q Consensus       441 ~~~~~~~  447 (479)
                      . +|...
T Consensus       424 ~-~G~~~  429 (448)
T PRK04792        424 I-DGRFK  429 (448)
T ss_pred             C-CCCce
Confidence            5 34333

>KOG1064|consensus

Probab=98.80  E-value=6.7e-08  Score=103.05  Aligned_cols=144  Identities=18%  Similarity=0.239  Sum_probs=109.0

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCcccC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC---GDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~  298 (479)
                      |+.+.|+.+|+.+..+..||.+.+|... .+.....+.|+....+..|-.  ..++++   ++++.+.+||....... .
T Consensus      2254 vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s 2329 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-S 2329 (2439)
T ss_pred             hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCccc-c
Confidence            4445666778888888889999999987 444556777888777777754  455665   36789999997532211 1


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------CCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------EESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      .....+.++..++++-|..+.+++|+.+|.+.+||.+....       .....+++|+..|+++||++.....++++.
T Consensus      2330 ~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2330 LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhheeeccCcccceEEEEccccchhhcCc
Confidence            11245678899999999999999999999999999876432       245679999999999999999887777765

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.79  E-value=1.3e-06  Score=86.50  Aligned_cols=177  Identities=16%  Similarity=0.097  Sum_probs=114.5

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  317 (479)
                      ..|.++|...+.. ..+..+...+...+|+||+++++.++.+   ..|++||+.+++.....   ..........|+|++
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~---~~~~~~~~~~~spDg  245 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA---SFPGMNGAPAFSPDG  245 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCC
Confidence            4577788754433 4455566678899999999999876543   47999999876432211   122334567889988


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----
Q psy8895         318 SRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----  393 (479)
Q Consensus       318 ~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----  393 (479)
                      +.++.....                      ..+..|++||+.+++. ..+..+........|+|++..++..++.    
T Consensus       246 ~~l~~~~~~----------------------~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~  302 (417)
T TIGR02800       246 SKLAVSLSK----------------------DGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSP  302 (417)
T ss_pred             CEEEEEECC----------------------CCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCc
Confidence            876543210                      1123577788776543 3344444445567899999877655432    


Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC---cEEEEecCCCe
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG---TMCFWDWRTGY  445 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg---~i~lWd~~~~~  445 (479)
                      .+.+++..+++. ..+..+...+....++|++ .++.++.++   .|.+||+.++.
T Consensus       303 ~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~  357 (417)
T TIGR02800       303 QIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG  357 (417)
T ss_pred             eEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence            377788776654 3344445556777899988 777766665   78899988764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=3.1e-06  Score=83.47  Aligned_cols=204  Identities=18%  Similarity=0.089  Sum_probs=116.7

Q ss_pred             CCccEEEEEEcCCCcE--E-EEEeCCC--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-----CCcEEE
Q psy8895         218 HLGWVRCVAVEPGNEW--F-ATGSADK--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-----DRTVKC  287 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~--l-~sgs~d~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----d~~i~~  287 (479)
                      ......+=+|+|||+.  + +....++  .|.+.++.+++... +....+.....+|+|||+.|+..+.     |-.+..
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~  261 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQS  261 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEE
Confidence            3445566789999974  2 2444444  46666887775432 2223344456799999998876543     223444


Q ss_pred             EECCCCC--cccCCCCCCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-Ce
Q psy8895         288 WDLEYNK--APVQPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GK  363 (479)
Q Consensus       288 wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~  363 (479)
                      |++..+.  ...... ...........|+|+|+.++..+. ++...                       +.++++.. +.
T Consensus       262 ~~~~~g~~g~~~~lt-~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~-----------------------ly~~~~~~~g~  317 (428)
T PRK01029        262 FSLETGAIGKPRRLL-NEAFGTQGNPSFSPDGTRLVFVSNKDGRPR-----------------------IYIMQIDPEGQ  317 (428)
T ss_pred             eecccCCCCcceEee-cCCCCCcCCeEECCCCCEEEEEECCCCCce-----------------------EEEEECccccc
Confidence            6765421  111110 011122345788999887765442 23222                       22333321 22


Q ss_pred             eEEEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE-EEeC--CCc
Q psy8895         364 SLCTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV-SGAD--NGT  435 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~~--dg~  435 (479)
                      ....+..+...+....|+||++.++..+.+    .|.+||..+++... +......+....++||+ .|+ ++..  ...
T Consensus       318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~  396 (428)
T PRK01029        318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESE  396 (428)
T ss_pred             ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCce
Confidence            233344444566788999999877765432    48899998887643 33223345678899998 554 3333  356


Q ss_pred             EEEEecCCCeEE
Q psy8895         436 MCFWDWRTGYNF  447 (479)
Q Consensus       436 i~lWd~~~~~~~  447 (479)
                      |.+||+.+++..
T Consensus       397 L~~vdl~~g~~~  408 (428)
T PRK01029        397 LYLISLITKKTR  408 (428)
T ss_pred             EEEEECCCCCEE
Confidence            888888877643

>KOG1064|consensus

Probab=98.77  E-value=5.8e-08  Score=103.50  Aligned_cols=194  Identities=15%  Similarity=0.251  Sum_probs=139.8

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC-CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH-VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +.-|-..|.++.-+|...+.+||+.||.+++|....++.+..++.. ...|+.+.|+.+|..+..+..||.+.+|.+. .
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-p 2282 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-P 2282 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-C
Confidence            3345677888888898999999999999999999988887766532 3678888999999988888999999999875 2


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EEEEccCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LCTLTNHK  372 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~~~~~h~  372 (479)
                      ++...  ...++.......|-.  ..+++++                      ..+.++.+.+||...... -..-+.|.
T Consensus      2283 k~~~s--~qchnk~~~Df~Fi~--s~~~tag----------------------~s~d~~n~~lwDtl~~~~~s~v~~~H~ 2336 (2439)
T KOG1064|consen 2283 KPYTS--WQCHNKALSDFRFIG--SLLATAG----------------------RSSDNRNVCLWDTLLPPMNSLVHTCHD 2336 (2439)
T ss_pred             cceec--cccCCccccceeeee--hhhhccc----------------------cCCCCCcccchhcccCcccceeeeecC
Confidence            21111  112233333344332  1222211                      113467888898654211 11226799


Q ss_pred             CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q psy8895         373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~  444 (479)
                      +.++++++-|..++|.+|+.++ +++||+...++.++++.         .....++++|+..|.|+||++..-
T Consensus      2337 ~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2337 GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LDTREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hhhhheeeccCcccceEEEEcccc
Confidence            9999999999999999999875 99999988887776654         233458999999999999998764

>KOG2041|consensus

Probab=98.76  E-value=4.4e-06  Score=81.90  Aligned_cols=226  Identities=17%  Similarity=0.217  Sum_probs=148.1

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---------------eEEEEecCCcCEEEEEEcCCCCEEEEEECCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---------------LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR  283 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---------------~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  283 (479)
                      .....|++|+.+..+|+.|+.||.+++-.+.+..               .-+++.||+.+|..+.|+.+.+.|-|...+|
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G   93 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG   93 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence            4567899999999999999999999999875421               1145789999999999999988898999999


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CC-------
Q psy8895         284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TE-------  340 (479)
Q Consensus       284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~-------  340 (479)
                      .|.+|-+-++........-...+-+.++.|..+|+.+.....||.+.+-..+...                .+       
T Consensus        94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf  173 (1189)
T KOG2041|consen   94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF  173 (1189)
T ss_pred             eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence            9999987554322111111134568899999999988888888776553322110                00       


Q ss_pred             ------------------------------------------------------CCCeEEEEeCCCcEEEEECCC-CeeE
Q psy8895         341 ------------------------------------------------------ESHPVITGSHDCTIRLWDLAA-GKSL  365 (479)
Q Consensus       341 ------------------------------------------------------~~~~l~sgs~d~~v~iwd~~~-~~~~  365 (479)
                                                                            +...++.+-.+|.+.|..-+. ..++
T Consensus       174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv  253 (1189)
T KOG2041|consen  174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV  253 (1189)
T ss_pred             hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence                                                                  111233444444443322111 1121


Q ss_pred             EEEccCCCceEEEEEeCCCcEEEEEcCCc---------EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCc
Q psy8895         366 CTLTNHKKSVRSVALHPTLYMFASASPDN---------IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGT  435 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d~---------i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~  435 (479)
                      ..-.  .-.|..+.|+++|..||.++.+.         ...+-.+-|+.+.+++.....|+++++-..| .++- .-|+.
T Consensus       254 v~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~-Avdsf  330 (1189)
T KOG2041|consen  254 VVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAI-AVDSF  330 (1189)
T ss_pred             EEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEE-Eecce
Confidence            1111  12466788999999998876542         2223334566777787778889999998888 4443 45788


Q ss_pred             EEEEecCCCeEE
Q psy8895         436 MCFWDWRTGYNF  447 (479)
Q Consensus       436 i~lWd~~~~~~~  447 (479)
                      |.+=+++..+.-
T Consensus       331 iyfanIRP~ykW  342 (1189)
T KOG2041|consen  331 IYFANIRPEYKW  342 (1189)
T ss_pred             EEEEeecccceE
Confidence            888777766543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.73  E-value=1.6e-05  Score=86.53  Aligned_cols=225  Identities=16%  Similarity=0.235  Sum_probs=142.5

Q ss_pred             EEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEec--C------------CcCEEEEEEcCCCCEEEEE-ECCCcEE
Q psy8895         223 RCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTG--H------------VGSVRGLTVSPRHPYLFSC-GDDRTVK  286 (479)
Q Consensus       223 ~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~--h------------~~~v~~v~~~~~~~~l~s~-~~d~~i~  286 (479)
                      ..+++++ ++.++++-+.++.|+++|... ..+..+.+  .            -..-..+++++++..|+.+ ...+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            3577876 467888888889999999764 44333322  1            1124788999887765554 4457899


Q ss_pred             EEECCCCCcccCCC--C-----CC-------CCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC------------
Q psy8895         287 CWDLEYNKAPVQPG--S-----MD-------SESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSAT------------  339 (479)
Q Consensus       287 ~wd~~~~~~~~~~~--~-----~~-------~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~------------  339 (479)
                      .+|+.+........  .     .+       .-.....++++| ++...++...++.|.+|+......            
T Consensus       650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~  729 (1057)
T PLN02919        650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL  729 (1057)
T ss_pred             EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence            99986543211100  0     00       012345789998 455556666777888887543210            


Q ss_pred             -------------------CCCC-eEEEEeCCCcEEEEECCCCeeEEEE-------------ccC--------CCceEEE
Q psy8895         340 -------------------EESH-PVITGSHDCTIRLWDLAAGKSLCTL-------------TNH--------KKSVRSV  378 (479)
Q Consensus       340 -------------------~~~~-~l~sgs~d~~v~iwd~~~~~~~~~~-------------~~h--------~~~v~~i  378 (479)
                                         .+.. +.++-+.++.|++||+.++......             ...        -..-..+
T Consensus       730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv  809 (1057)
T PLN02919        730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV  809 (1057)
T ss_pred             CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence                               1122 3455667789999999876432110             000        0123578


Q ss_pred             EEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeec-------------CCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         379 ALHPTLYMFASASPD-NIKQWKCPEGKFIQNLP-------------GHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       379 ~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~-------------~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      ++++++.++++.+.+ .|++||..++.......             +.-.....++++++| .+++-+.+++|++||+++
T Consensus       810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~  889 (1057)
T PLN02919        810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK  889 (1057)
T ss_pred             eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence            999999888888766 49999998776543211             111246788999988 778888899999999999


Q ss_pred             CeEEE
Q psy8895         444 GYNFQ  448 (479)
Q Consensus       444 ~~~~~  448 (479)
                      +...+
T Consensus       890 ~~~~~  894 (1057)
T PLN02919        890 GEAAE  894 (1057)
T ss_pred             Cccce
Confidence            86543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.72  E-value=5.6e-08  Score=60.38  Aligned_cols=38  Identities=37%  Similarity=0.708  Sum_probs=35.8

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD  247 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd  247 (479)
                      ++..++.+|.+.|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            45678999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.68  E-value=1.3e-05  Score=78.23  Aligned_cols=217  Identities=13%  Similarity=0.090  Sum_probs=130.8

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCC---C
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE---S  306 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~  306 (479)
                      ++..++.++.++.+..+|..+|+.++...... .+.+.... .+..++.++.++.+..||.++++...+.......   .
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~  181 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR  181 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence            46677888889999999999999887654322 22221111 2345666778999999999877654321110000   0


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCcEEEEECC
Q psy8895         307 GIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------EESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       307 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      ........  +..++.+..++.+.-++..+...                          -....++.++.++.++.+|.+
T Consensus       182 ~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       182 GSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             CCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECC
Confidence            00000111  12445555555555554332110                          012356778889999999999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCC-cceEEEEEEcCCCEEEEEeCCCcEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGH-NAIINSICVNNEGVLVSGADNGTMCFW  439 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~~l~sg~~dg~i~lW  439 (479)
                      +++.+......  ........ ++.+++...++.+..+|..+|+.+-....- ........+ .++.|+.++.||.+.++
T Consensus       260 tG~~~W~~~~~--~~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i-~g~~l~~~~~~G~l~~~  335 (377)
T TIGR03300       260 SGRVLWKRDAS--SYQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV-VGGYLVVGDFEGYLHWL  335 (377)
T ss_pred             CCcEEEeeccC--CccCceEe-CCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE-ECCEEEEEeCCCEEEEE
Confidence            99888776421  11222222 345555555567999999999876544221 111222222 24588889999999999


Q ss_pred             ecCCCeEEEEEEEeE
Q psy8895         440 DWRTGYNFQRLQVRC  454 (479)
Q Consensus       440 d~~~~~~~~~~~~~~  454 (479)
                      |..+|+.+.++++..
T Consensus       336 d~~tG~~~~~~~~~~  350 (377)
T TIGR03300       336 SREDGSFVARLKTDG  350 (377)
T ss_pred             ECCCCCEEEEEEcCC
Confidence            999999988887655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.66  E-value=0.00015  Score=69.68  Aligned_cols=225  Identities=16%  Similarity=0.270  Sum_probs=141.3

Q ss_pred             EEEEEcCCCcEEEEEeC----CCeEEEEECCC--Cce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCC
Q psy8895         223 RCVAVEPGNEWFATGSA----DKIIKVWDLAT--GKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYN  293 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~----d~~i~iWd~~~--~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~  293 (479)
                      ..++++|++++|.+...    ++.|..|++..  +++  +.........-..++++|++++++++. .++.+.++++...
T Consensus        40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~  119 (345)
T PF10282_consen   40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD  119 (345)
T ss_dssp             CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence            45778999999988887    46898888865  333  223332233456789999999999886 5889999999763


Q ss_pred             CcccCC------------CCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCC--C-------------------
Q psy8895         294 KAPVQP------------GSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSA--T-------------------  339 (479)
Q Consensus       294 ~~~~~~------------~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~--~-------------------  339 (479)
                      ......            ...+.....-++.++|+++++++.. ....|.+|+.+...  .                   
T Consensus       120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f  199 (345)
T PF10282_consen  120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF  199 (345)
T ss_dssp             SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred             cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence            211110            0112335577899999999877654 44578888875432  1                   


Q ss_pred             -CCCCe-EEEEeCCCcEEEEECC--CCe--eEEEEcc----C--CCceEEEEEeCCCcEEEEEc--CCcEEEEeCC--CC
Q psy8895         340 -EESHP-VITGSHDCTIRLWDLA--AGK--SLCTLTN----H--KKSVRSVALHPTLYMFASAS--PDNIKQWKCP--EG  403 (479)
Q Consensus       340 -~~~~~-l~sgs~d~~v~iwd~~--~~~--~~~~~~~----h--~~~v~~i~~~~~~~~l~s~s--~d~i~~w~~~--~~  403 (479)
                       ++... .+....+++|.++++.  .++  .+.++..    .  ......|.++|+++.|..+.  .+.|.++++.  ++
T Consensus       200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g  279 (345)
T PF10282_consen  200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG  279 (345)
T ss_dssp             -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred             cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence             12223 3556678889999888  332  2222221    1  12578899999998765554  3458999883  34


Q ss_pred             eE--EeeecCCcceEEEEEEcCCC-EEE-EEeCCCcEEEEec--CCCeEE
Q psy8895         404 KF--IQNLPGHNAIINSICVNNEG-VLV-SGADNGTMCFWDW--RTGYNF  447 (479)
Q Consensus       404 ~~--~~~~~~h~~~v~~l~~~~~~-~l~-sg~~dg~i~lWd~--~~~~~~  447 (479)
                      ++  +............+.++|++ +|+ +.-.++.|.+|++  ++|...
T Consensus       280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLT  329 (345)
T ss_dssp             TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEE
Confidence            33  34444334457788999998 555 4557789999987  476543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=1.4e-05  Score=79.42  Aligned_cols=176  Identities=15%  Similarity=0.076  Sum_probs=110.4

Q ss_pred             eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC
Q psy8895         242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS  318 (479)
Q Consensus       242 ~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  318 (479)
                      .|.++|.+.+.. ..+..+...+....|+|||+.|+..+.+   ..|.+||+.+++.....   ...+......|+|+++
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~---~~~g~~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT---NFEGLNGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc---CCCCCcCCeEECCCCC
Confidence            477778765543 4455567788999999999998876543   36888999766432211   1122334578999998


Q ss_pred             EEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----
Q psy8895         319 RLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----  393 (479)
Q Consensus       319 ~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----  393 (479)
                      .++... .++                       +..|+++|+.+++. ..+..+........|+|++..++..++.    
T Consensus       256 ~la~~~~~~g-----------------------~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~  311 (430)
T PRK00178        256 KLAFVLSKDG-----------------------NPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKP  311 (430)
T ss_pred             EEEEEEccCC-----------------------CceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCc
Confidence            776432 211                       23577788877653 3444455556678899998866555432    


Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC-CC--cEEEEecCCCeE
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD-NG--TMCFWDWRTGYN  446 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~-dg--~i~lWd~~~~~~  446 (479)
                      .+.+++..+++... +...........++||+ .|+..+. ++  .|.+||+.+++.
T Consensus       312 ~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~  367 (430)
T PRK00178        312 QIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV  367 (430)
T ss_pred             eEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE
Confidence            37778887776432 22111223345789998 5554443 33  478899988754

>KOG2315|consensus

Probab=98.60  E-value=7.9e-05  Score=71.45  Aligned_cols=196  Identities=14%  Similarity=0.288  Sum_probs=124.8

Q ss_pred             CCccEEEEEEcCCCc--EEE-----EEeCCCeEEEEECCCCce-----EEEEecCCcCEEEEEEcCCCCEEE-EEE--CC
Q psy8895         218 HLGWVRCVAVEPGNE--WFA-----TGSADKIIKVWDLATGKL-----KLSLTGHVGSVRGLTVSPRHPYLF-SCG--DD  282 (479)
Q Consensus       218 h~~~v~~~~~~~~g~--~l~-----sgs~d~~i~iWd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~-s~~--~d  282 (479)
                      |...+..+.++|.+.  .+|     +.+.-+.+|||...-...     .++|-.  ..-..+.|++.|.-|+ .++  -|
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdVD  241 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWNKLGTALLVLASTDVD  241 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEeccCCceEEEEEEEeec
Confidence            566778888887632  333     245567899998762211     111111  1123456776665332 222  22


Q ss_pred             ---------CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCc
Q psy8895         283 ---------RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCT  353 (479)
Q Consensus       283 ---------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~  353 (479)
                               .++++.+++.......   ...+++|.++.|+++++.+++                       +-|-.-..
T Consensus       242 ktn~SYYGEq~Lyll~t~g~s~~V~---L~k~GPVhdv~W~~s~~EF~V-----------------------vyGfMPAk  295 (566)
T KOG2315|consen  242 KTNASYYGEQTLYLLATQGESVSVP---LLKEGPVHDVTWSPSGREFAV-----------------------VYGFMPAK  295 (566)
T ss_pred             CCCccccccceEEEEEecCceEEEe---cCCCCCceEEEECCCCCEEEE-----------------------EEecccce
Confidence                     3677777763222222   345788999999999987764                       33444456


Q ss_pred             EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895         354 IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       354 v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      +-|+|++ ++++..+.  +++=+++-|+|.+.+++-++-+    .+.+||+.+.+++..+..-..  +-..++||| +++
T Consensus       296 vtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~fl  370 (566)
T KOG2315|consen  296 VTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFL  370 (566)
T ss_pred             EEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEE
Confidence            7788877 45666663  4555789999999988888755    389999999887776655433  345789999 776


Q ss_pred             EEeC------CCcEEEEecCCCeEE
Q psy8895         429 SGAD------NGTMCFWDWRTGYNF  447 (479)
Q Consensus       429 sg~~------dg~i~lWd~~~~~~~  447 (479)
                      |+..      |..++||+.. |..+
T Consensus       371 TATTaPRlrvdNg~Kiwhyt-G~~l  394 (566)
T KOG2315|consen  371 TATTAPRLRVDNGIKIWHYT-GSLL  394 (566)
T ss_pred             EEeccccEEecCCeEEEEec-Ccee
Confidence            6653      7889999974 5444

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.59  E-value=5.9e-05  Score=68.34  Aligned_cols=201  Identities=16%  Similarity=0.173  Sum_probs=119.4

Q ss_pred             CCeEEEEECCCCceEEEEecC--CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC
Q psy8895         240 DKIIKVWDLATGKLKLSLTGH--VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       240 d~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  317 (479)
                      +++|..||..+|+.++...--  .....+..+ +++..+++++.++.|..||..+++...............    ...+
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~----~~~~   76 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP----VVDG   76 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE----EEET
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee----eecc
Confidence            688999999999998877531  122222122 245577777899999999998776543221111100110    1123


Q ss_pred             CEEEEEeCCCeEEEEeCCCCC------------CC---------CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc--
Q psy8895         318 SRLITTEADKTVKLYKEDDSA------------TE---------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS--  374 (479)
Q Consensus       318 ~~l~~~~~d~~i~~~~~~~~~------------~~---------~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~--  374 (479)
                      ..+++++.++.+..++..+..            ..         ....++.+..++.+..+|+++|+.+.........  
T Consensus        77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            344444455555444422211            00         1345778888999999999999998887654322  


Q ss_pred             --------eEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeE
Q psy8895         375 --------VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       375 --------v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~  446 (479)
                              +..-.+..++.++++..++.+...|..+++.+-... .. .+..+....++.|+.++.++.+..||++||+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~~~-~~-~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWSKP-IS-GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             --EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEEEC-SS--ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             cceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEEec-CC-CccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence                    112222234566666666654333999998654333 22 23332334556777777999999999999976


Q ss_pred             E
Q psy8895         447 F  447 (479)
Q Consensus       447 ~  447 (479)
                      .
T Consensus       235 ~  235 (238)
T PF13360_consen  235 V  235 (238)
T ss_dssp             E
T ss_pred             E
Confidence            4

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.56  E-value=1.6e-05  Score=79.06  Aligned_cols=176  Identities=16%  Similarity=0.082  Sum_probs=105.6

Q ss_pred             eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC
Q psy8895         242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR--TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS  318 (479)
Q Consensus       242 ~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  318 (479)
                      .|.++|...... ..+..+...+.+..|+|||+.++..+. ++  .|.+||+.+++......   ..+......|+|+++
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~---~~g~~~~~~wSPDG~  274 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS---FPGINGAPRFSPDGK  274 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC---CCCCcCCeeECCCCC
Confidence            566677655433 344456668889999999998886653 32  58888987654322111   112233578899998


Q ss_pred             EEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----
Q psy8895         319 RLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----  393 (479)
Q Consensus       319 ~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----  393 (479)
                      .++.. +.++.                       ..|+++|+.+++. ..+..+.......+|+||+..++..++.    
T Consensus       275 ~La~~~~~~g~-----------------------~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~  330 (448)
T PRK04792        275 KLALVLSKDGQ-----------------------PEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKP  330 (448)
T ss_pred             EEEEEEeCCCC-----------------------eEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence            77643 22221                       2366777776543 3444455556778999999876655432    


Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE-eCCCc--EEEEecCCCeE
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG-ADNGT--MCFWDWRTGYN  446 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg-~~dg~--i~lWd~~~~~~  446 (479)
                      .+.++|..+++... +..........+++||+ .|+.. ..++.  |.++|+.++..
T Consensus       331 ~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~  386 (448)
T PRK04792        331 QIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM  386 (448)
T ss_pred             eEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe
Confidence            36777887776433 22122223346889998 55444 34454  44567777753

>KOG0882|consensus

Probab=98.55  E-value=5e-07  Score=83.74  Aligned_cols=209  Identities=16%  Similarity=0.120  Sum_probs=136.7

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--C-ceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--G-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYN  293 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~  293 (479)
                      |.+.|+-+.- ...+++.+++.||.++.|.-..  + ..+..+..|...|.+++.+-++..+.|.+. |+.++++|++.-
T Consensus         8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~   86 (558)
T KOG0882|consen    8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF   86 (558)
T ss_pred             ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence            6666666543 3578999999999999998653  2 334556778889999999999988888777 999999999754


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe--eEEEEccC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK--SLCTLTNH  371 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~h  371 (479)
                      ....-.......+.+ +...++....                      +..-++.-.++.+.++|-....  ....-+-|
T Consensus        87 DminmiKL~~lPg~a-~wv~skGd~~----------------------s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   87 DMINMIKLVDLPGFA-EWVTSKGDKI----------------------SLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             chhhhcccccCCCce-EEecCCCCee----------------------eeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            322100000011111 1111221110                      0011222345666777655432  23333458


Q ss_pred             CCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC------CeEEee---------ecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         372 KKSVRSVALHPTLYMFASASPDN-IKQWKCPE------GKFIQN---------LPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       372 ~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~------~~~~~~---------~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ..+|..+.+++.+..+.+....+ |..|....      .++...         ..-.+....++.|+|++ .+.+-+.|.
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr  223 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR  223 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence            99999999999998888877554 88997652      111111         12234567899999999 899999999


Q ss_pred             cEEEEecCCCeEEEEE
Q psy8895         435 TMCFWDWRTGYNFQRL  450 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~  450 (479)
                      .|+++++++|...+.+
T Consensus       224 kVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  224 KVRGFVFKTGKLVQEI  239 (558)
T ss_pred             EEEEEEeccchhhhhh
Confidence            9999999999766554

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.49  E-value=7.2e-06  Score=72.73  Aligned_cols=221  Identities=15%  Similarity=0.219  Sum_probs=139.4

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----eEEEEecCCc------------CEEEEEEcCCCC--EEEEE
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-----LKLSLTGHVG------------SVRGLTVSPRHP--YLFSC  279 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-----~~~~~~~h~~------------~v~~v~~~~~~~--~l~s~  279 (479)
                      ...|+++-|.-.|.|+++|...|.|.++.-....     ....+++|..            .|..+.|..++.  .++..
T Consensus        26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls  105 (460)
T COG5170          26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS  105 (460)
T ss_pred             cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence            4568899999899999999999999999865432     2234666642            456666654432  45556


Q ss_pred             ECCCcEEEEECCCCCcc------------------c------CCCCC-----------------CCCCCeEEEEEeCCCC
Q psy8895         280 GDDRTVKCWDLEYNKAP------------------V------QPGSM-----------------DSESGIFSMTFDNSGS  318 (479)
Q Consensus       280 ~~d~~i~~wd~~~~~~~------------------~------~~~~~-----------------~~~~~i~~~~~~~~~~  318 (479)
                      +.|++|++|.+......                  .      .....                 .+...|.++.+..+..
T Consensus       106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e  185 (460)
T COG5170         106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE  185 (460)
T ss_pred             cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence            79999999987533110                  0      00000                 0122355677777666


Q ss_pred             EEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCcEEEEECCCCee------EE
Q psy8895         319 RLITTEADKTVKLYKEDDSAT--------------------------EESHPVITGSHDCTIRLWDLAAGKS------LC  366 (479)
Q Consensus       319 ~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~v~iwd~~~~~~------~~  366 (479)
                      .+++ ..|-.|.+|++.....                          .....+.-.+..|+|++-|++....      +.
T Consensus       186 t~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf  264 (460)
T COG5170         186 TLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF  264 (460)
T ss_pred             eeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence            6554 4567889998653211                          1123466677889999999984211      11


Q ss_pred             --EE--------ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC-eEEeeecCCcc------------eE---EEEE
Q psy8895         367 --TL--------TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG-KFIQNLPGHNA------------II---NSIC  420 (479)
Q Consensus       367 --~~--------~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~-~~~~~~~~h~~------------~v---~~l~  420 (479)
                        ++        .+-.++|..+.|++.++++++-+.-.+++||..-. .++++.+-|..            .|   ..+.
T Consensus       265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeis  344 (460)
T COG5170         265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEIS  344 (460)
T ss_pred             hhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEE
Confidence              11        11234788899999999999998889999998643 55676655521            22   2345


Q ss_pred             EcCCC-EEEEEeCCCcEEEEe
Q psy8895         421 VNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      |+.|. .+++|+.....-++-
T Consensus       345 fSgd~~~v~sgsy~NNfgiyp  365 (460)
T COG5170         345 FSGDDKHVLSGSYSNNFGIYP  365 (460)
T ss_pred             ecCCcccccccccccceeeec
Confidence            66555 677777665555544

>KOG1912|consensus

Probab=98.48  E-value=1.9e-05  Score=78.36  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=80.3

Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC----------CcEEEEeCCCCeEE--eeec-
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP----------DNIKQWKCPEGKFI--QNLP-  410 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~----------d~i~~w~~~~~~~~--~~~~-  410 (479)
                      +++.|...|+|.+.|+.++..-+.+.-|...|..+.|.....++..+..          +.+.+-|+.+|.-.  ..++ 
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~  518 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK  518 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCC
Confidence            4788999999999999999888888889999999999876655533321          12566778777432  2233 


Q ss_pred             CCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         411 GHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       411 ~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      ..+.+|..+..+.-+ +|+..-.|.-+.+||+++-.+++
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr  557 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR  557 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence            346789999998877 88888999999999998765543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.45  E-value=0.00025  Score=64.71  Aligned_cols=195  Identities=16%  Similarity=0.312  Sum_probs=124.5

Q ss_pred             EEEEEcCCCcEEEEEeCC-CeEEEEECCC-CceE--EEEecCCcC----------EEEEEEcCCCCEEEEEE--CCCcEE
Q psy8895         223 RCVAVEPGNEWFATGSAD-KIIKVWDLAT-GKLK--LSLTGHVGS----------VRGLTVSPRHPYLFSCG--DDRTVK  286 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d-~~i~iWd~~~-~~~~--~~~~~h~~~----------v~~v~~~~~~~~l~s~~--~d~~i~  286 (479)
                      .-++++++|++++++... |.|.++-++. |...  .....|.+.          +....+.|++++|+++.  .| .|.
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~  170 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIF  170 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEE
Confidence            558899999999988865 7899998865 4332  123335544          88999999999998874  44 589


Q ss_pred             EEECCCCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-ee
Q psy8895         287 CWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KS  364 (479)
Q Consensus       287 ~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~  364 (479)
                      +|+++.++.... ........+.+.+.|+|+++++.+..                        --+++|.+|..... ..
T Consensus       171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~------------------------EL~stV~v~~y~~~~g~  226 (346)
T COG2706         171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN------------------------ELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe------------------------ccCCEEEEEEEcCCCce
Confidence            999985543321 22234566788999999999765432                        22344444444431 11


Q ss_pred             EE------EEcc---CCCceEEEEEeCCCcEEEEEcCC--cEEEEeCC--CCeE--EeeecCCcceEEEEEEcCCC-EEE
Q psy8895         365 LC------TLTN---HKKSVRSVALHPTLYMFASASPD--NIKQWKCP--EGKF--IQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       365 ~~------~~~~---h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~--~~~~--~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      +.      +++.   -.....+|.++|+++.|.++..+  .|-++.+.  ++++  .....-+.-.-..+.+++++ +|+
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence            11      2211   12356788899999988877654  47776653  3433  22233344445677888888 555


Q ss_pred             EEe-CCCcEEEEecC
Q psy8895         429 SGA-DNGTMCFWDWR  442 (479)
Q Consensus       429 sg~-~dg~i~lWd~~  442 (479)
                      ++. ++..|.+|.+.
T Consensus       307 aa~q~sd~i~vf~~d  321 (346)
T COG2706         307 AANQKSDNITVFERD  321 (346)
T ss_pred             EEccCCCcEEEEEEc
Confidence            444 45679999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.44  E-value=4.8e-05  Score=74.22  Aligned_cols=203  Identities=12%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE-----EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR-----GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      +..++.++.++.+..||.++|+.++.+........     +..+. + ..++.+..++.+..+|.++++...........
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            34566677889999999999998877654332211     11122 2 36677778899999998877644321100000


Q ss_pred             --C---C---e-EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         306 --S---G---I-FSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------EESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       306 --~---~---i-~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                        .   .   + ....+  .+..+..++.++.+..++..+...             .....++.++.||.+..+|..+++
T Consensus       223 g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~  300 (377)
T TIGR03300       223 GRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGS  300 (377)
T ss_pred             CCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCc
Confidence              0   0   0 00111  245667777778877777654321             123567788899999999999998


Q ss_pred             eEEEEccCCC-ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEE-EEEcCCCEEEEEeCCCcEEEE
Q psy8895         364 SLCTLTNHKK-SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINS-ICVNNEGVLVSGADNGTMCFW  439 (479)
Q Consensus       364 ~~~~~~~h~~-~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~sg~~dg~i~lW  439 (479)
                      .+........ ...+..+. ++.+++...++.+..+|..+|+.+.+++.+...+.. ..+. ++.|+.++.||.|..+
T Consensus       301 ~~W~~~~~~~~~~ssp~i~-g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       301 ELWKNDELKYRQLTAPAVV-GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEccccccCCccccCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCEEEEEeCCceEEEe
Confidence            8776532211 22222222 344555555556999999999998888766543332 2333 4567778899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=4e-05  Score=75.65  Aligned_cols=163  Identities=17%  Similarity=0.156  Sum_probs=96.2

Q ss_pred             CccEEEEEEcCCCcEEEEEeC-----CCeEEEEECCCC---ceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEE
Q psy8895         219 LGWVRCVAVEPGNEWFATGSA-----DKIIKVWDLATG---KLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWD  289 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~-----d~~i~iWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd  289 (479)
                      .+.....+|+|||+.|+..+.     +-.+.+|++..+   ........+.......+|+|||+.|+..+ .++..++|.
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            344556789999988876553     334555777653   33333333333445779999999887655 466555664


Q ss_pred             --CCC-CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         290 --LEY-NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       290 --~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                        +.. .......  ......+....|+|+|+.++....++                      ....|.+||+.+++.. 
T Consensus       310 ~~~~~~g~~~~~l--t~~~~~~~~p~wSPDG~~Laf~~~~~----------------------g~~~I~v~dl~~g~~~-  364 (428)
T PRK01029        310 MQIDPEGQSPRLL--TKKYRNSSCPAWSPDGKKIAFCSVIK----------------------GVRQICVYDLATGRDY-  364 (428)
T ss_pred             EECcccccceEEe--ccCCCCccceeECCCCCEEEEEEcCC----------------------CCcEEEEEECCCCCeE-
Confidence              321 1111111  11123455778999998877554321                      0235788888877653 


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEE-cCC---cEEEEeCCCCeEE
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASA-SPD---NIKQWKCPEGKFI  406 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~-s~d---~i~~w~~~~~~~~  406 (479)
                      .+......+....|+|++..++.. ..+   .+.++++..++..
T Consensus       365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~  408 (428)
T PRK01029        365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR  408 (428)
T ss_pred             EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            333333456788999998876543 322   3778888766543

>KOG3914|consensus

Probab=98.41  E-value=5.5e-06  Score=76.05  Aligned_cols=107  Identities=11%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCc----eEEEE--ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGK----LKLSL--TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~----~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      +..+++++++|.+..+....+++.....    +....  ..-...++.+..+.........++...+.+|......+.. 
T Consensus        68 ~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-  146 (390)
T KOG3914|consen   68 VLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-  146 (390)
T ss_pred             cccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch-
Confidence            3445666777766666655455543322    11111  1112233333333222222234556666677654322221 


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                        ..++.+.+..++++|++++++++..|..|++-..
T Consensus       147 --~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~y  180 (390)
T KOG3914|consen  147 --ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRY  180 (390)
T ss_pred             --hhhhhhhhheeeecCCCCEEEEecCCceEEEEec
Confidence              2456678899999999999999988888887553

>KOG1645|consensus

Probab=98.36  E-value=1e-05  Score=74.25  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=70.3

Q ss_pred             EEEecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEE
Q psy8895         212 YRVISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWD  289 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd  289 (479)
                      ...+.+|...|..++|+|..+ ++..++.+..|+|.|+++......+..+ ..+++++|.-|.. ++..|-..|.|.+||
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD  264 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD  264 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence            335678889999999999776 8899999999999999999888888888 6899999998765 455667889999999


Q ss_pred             CCCCCc
Q psy8895         290 LEYNKA  295 (479)
Q Consensus       290 ~~~~~~  295 (479)
                      ++...-
T Consensus       265 ~R~~~~  270 (463)
T KOG1645|consen  265 MRQPEG  270 (463)
T ss_pred             ccCCCc
Confidence            986543

>KOG0309|consensus

Probab=98.33  E-value=6.4e-06  Score=81.08  Aligned_cols=217  Identities=18%  Similarity=0.391  Sum_probs=138.1

Q ss_pred             EEEEcCC---CcEEEEEeCCCeEEEEECCC---CceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcc
Q psy8895         224 CVAVEPG---NEWFATGSADKIIKVWDLAT---GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       224 ~~~~~~~---g~~l~sgs~d~~i~iWd~~~---~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      .+.|+|.   ..++++.+.... .+|++..   ...-..+.+|...|+.+.|+|+.+ .+++++-|-.+..||++....+
T Consensus        72 d~qws~h~a~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p  150 (1081)
T KOG0309|consen   72 DVQWSPHPAKPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP  150 (1081)
T ss_pred             ceecccCCCCceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc
Confidence            3445443   346777666554 4898753   334456789999999999998765 6778999999999999876544


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC-------------------CCeEEEEeCCCcEEEE
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE-------------------SHPVITGSHDCTIRLW  357 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~-------------------~~~l~sgs~d~~v~iw  357 (479)
                      ..... .-..+-..++|+-....+.+.+..+.+.+|+.+......                   -..+.+.+.|++|+.|
T Consensus       151 ~ys~~-~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw  229 (1081)
T KOG0309|consen  151 FYSTS-SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW  229 (1081)
T ss_pred             eeeee-cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence            32211 122344567777666666667777889999976543210                   1236789999999999


Q ss_pred             ECCCCee--EEEEccCCCceEEEEEeCCC--cEEEE-EcCCcEE---------EEeCCCC-eEEeeecCCcceEEEEEE-
Q psy8895         358 DLAAGKS--LCTLTNHKKSVRSVALHPTL--YMFAS-ASPDNIK---------QWKCPEG-KFIQNLPGHNAIINSICV-  421 (479)
Q Consensus       358 d~~~~~~--~~~~~~h~~~v~~i~~~~~~--~~l~s-~s~d~i~---------~w~~~~~-~~~~~~~~h~~~v~~l~~-  421 (479)
                      |......  .++. .-..+|..-.+.|-+  .++.- -+...+.         .|+..++ +.++++.||.+.|-.+-+ 
T Consensus       230 ~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR  308 (1081)
T KOG0309|consen  230 DYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWR  308 (1081)
T ss_pred             cccccccccceec-cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhh
Confidence            9875422  2222 123455555555532  22211 1111233         3444333 568999999988754432 


Q ss_pred             -------c---CCCEEEEEeCCCcEEEEecCC
Q psy8895         422 -------N---NEGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       422 -------~---~~~~l~sg~~dg~i~lWd~~~  443 (479)
                             .   .|-.|+|=|.|.++|+|-+.+
T Consensus       309 ~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  309 KRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             hcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                   1   122799999999999998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.31  E-value=0.0053  Score=66.16  Aligned_cols=223  Identities=14%  Similarity=0.158  Sum_probs=127.5

Q ss_pred             CCccEEEEEEcCCCcEEEEEeC---C---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSA---D---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD---DRTVKCW  288 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~---d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~~w  288 (479)
                      +...-..++|..||+++|..+.   .   +.+|||+-+ |....+-+.-.+--.+++|.|.|.++++...   ...|..|
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence            4455678999999999998775   2   579999965 6655544433444568899999999887643   3466667


Q ss_pred             ECCCCCccc-CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC-CCcEEEEECCCCeeEE
Q psy8895         289 DLEYNKAPV-QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH-DCTIRLWDLAAGKSLC  366 (479)
Q Consensus       289 d~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~-d~~v~iwd~~~~~~~~  366 (479)
                      .-+..+... ..........+..+.|++++..|++...+. |.+|-..+.-=-.-+.+..... ....--||-+....+.
T Consensus       287 ErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~  365 (928)
T PF04762_consen  287 ERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH  365 (928)
T ss_pred             ecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence            643222111 111113446789999999999999877655 8888754421000000111111 1112456666554444


Q ss_pred             EEccCCCceEE------EEEeCC-----CcEEEEEcCCcEEEEeCCCCeE-----EeeecCCcceEEEEEEcCCC-EEEE
Q psy8895         367 TLTNHKKSVRS------VALHPT-----LYMFASASPDNIKQWKCPEGKF-----IQNLPGHNAIINSICVNNEG-VLVS  429 (479)
Q Consensus       367 ~~~~h~~~v~~------i~~~~~-----~~~l~s~s~d~i~~w~~~~~~~-----~~~~~~h~~~v~~l~~~~~~-~l~s  429 (479)
                      .+.. .+.+..      ++.++.     .-..+.-..+++++-.+.....     ...+. -...|.+++|++++ .+++
T Consensus       366 v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~av  443 (928)
T PF04762_consen  366 VLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAV  443 (928)
T ss_pred             EEec-CCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEE
Confidence            4432 122222      222221     1122333333455544433321     12222 23578999999887 6888


Q ss_pred             EeCCCcEEEEecCCC
Q psy8895         430 GADNGTMCFWDWRTG  444 (479)
Q Consensus       430 g~~dg~i~lWd~~~~  444 (479)
                      -..||+|.+|.+..+
T Consensus       444 l~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  444 LTSDGSLSIYEWDLK  458 (928)
T ss_pred             EECCCCEEEEEecCC
Confidence            889999999996543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.31  E-value=0.0006  Score=64.89  Aligned_cols=177  Identities=14%  Similarity=0.186  Sum_probs=110.6

Q ss_pred             EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE------E-----CCCcEEEEECCCCCcccCCCCCCCC
Q psy8895         237 GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC------G-----DDRTVKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       237 gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~------~-----~d~~i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      .+.++++++|.+..++.+.+-.-..-.=..+.|.+.|.++..-      +     ....+.+++++.......   .+..
T Consensus       198 ~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~---~~~~  274 (561)
T COG5354         198 LNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE---KDLK  274 (561)
T ss_pred             CCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccccee---cccc
Confidence            4567899999998766544321111122356777777765421      1     124678888864433322   1346


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc
Q psy8895         306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY  385 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~  385 (479)
                      +.|....|.|.++.+++                       ++|-.+..+.++|++.. ....+  .+..=+.+.|+|..+
T Consensus       275 ~pVhdf~W~p~S~~F~v-----------------------i~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r  328 (561)
T COG5354         275 DPVHDFTWEPLSSRFAV-----------------------ISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHER  328 (561)
T ss_pred             ccceeeeecccCCceeE-----------------------Eecccccceeecccccc-eEEec--CCcccccccccCccc
Confidence            78899999998877764                       45566677788888765 33333  344446788999988


Q ss_pred             EEEEEcCC----cEEEEeCCCCe-EEeeecCCcceEEEEEEcCCC-EEEEE--e----CCCcEEEEecCCC
Q psy8895         386 MFASASPD----NIKQWKCPEGK-FIQNLPGHNAIINSICVNNEG-VLVSG--A----DNGTMCFWDWRTG  444 (479)
Q Consensus       386 ~l~s~s~d----~i~~w~~~~~~-~~~~~~~h~~~v~~l~~~~~~-~l~sg--~----~dg~i~lWd~~~~  444 (479)
                      ++..++-|    ++.+|+....- +...+.+-..  +-..++||+ ++.+.  +    .|..|+|||+...
T Consensus       329 ~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~--s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         329 YILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNT--SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             EEEEecCCccccceEEeccCCceEEEEEeecCCc--eEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            87777655    48899986543 3334444332  223589999 44332  2    4889999998654

>KOG0280|consensus

Probab=98.28  E-value=9.5e-05  Score=65.38  Aligned_cols=166  Identities=16%  Similarity=0.129  Sum_probs=101.0

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEecCCc------CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCC
Q psy8895         233 WFATGSADKIIKVWDLATGKLKLSLTGHVG------SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES  306 (479)
Q Consensus       233 ~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~------~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~  306 (479)
                      .++-+-.+|.|.++..........+++-..      ...++.|++.+..++++-.+|.+.+-+...........-..++-
T Consensus        87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~  166 (339)
T KOG0280|consen   87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF  166 (339)
T ss_pred             eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence            455566778888887765444334433221      24567788888888888888888744332111110000112223


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-CCeeEEE-EccCCCceEEEEEeC-C
Q psy8895         307 GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA-AGKSLCT-LTNHKKSVRSVALHP-T  383 (479)
Q Consensus       307 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~-~~~~~~~-~~~h~~~v~~i~~~~-~  383 (479)
                      .++...|+..                        +.+.+.+|+.|+.+..||++ .++.+.+ .+.|...|.+|.-+| .
T Consensus       167 E~Wta~f~~~------------------------~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~  222 (339)
T KOG0280|consen  167 EAWTAKFSDK------------------------EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPK  222 (339)
T ss_pred             eeeeeecccC------------------------CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCC
Confidence            3333333322                        22567899999999999999 3444444 567888999998877 5


Q ss_pred             CcEEEEEcCCc-EEEEeCCCC-eEEeeecCCcceEEEEEEcC
Q psy8895         384 LYMFASASPDN-IKQWKCPEG-KFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       384 ~~~l~s~s~d~-i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~  423 (479)
                      ..++++|+.|. |++||..+. +.+..- .-.+.|+.++..|
T Consensus       223 ~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p  263 (339)
T KOG0280|consen  223 PTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHP  263 (339)
T ss_pred             CceEEEeccccceeeeehhcccCccccC-ccccceEEEEecc
Confidence            77899998885 999998643 333221 1235677776655

>KOG4714|consensus

Probab=98.27  E-value=9.7e-06  Score=70.22  Aligned_cols=92  Identities=18%  Similarity=0.316  Sum_probs=66.7

Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCC-CcEEEEEcCCc-EEEEeCCCCeE-EeeecCCcceEEEEEEcCCC--EE
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-LYMFASASPDN-IKQWKCPEGKF-IQNLPGHNAIINSICVNNEG--VL  427 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d~-i~~w~~~~~~~-~~~~~~h~~~v~~l~~~~~~--~l  427 (479)
                      ..+.|+++..+.+..-+.-...|++++-+|. .+++.+|++|. +.+||..+... ...+..|+..++.+.|.|..  .|
T Consensus       160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence            4566666544332222222345999999996 45666777775 89999877643 45578899999999998765  89


Q ss_pred             EEEeCCCcEEEEecCCC
Q psy8895         428 VSGADNGTMCFWDWRTG  444 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~  444 (479)
                      .++++||.+.-||..+.
T Consensus       240 ft~sedGslw~wdas~~  256 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDASTT  256 (319)
T ss_pred             eEecCCCcEEEEcCCCc
Confidence            99999999999998753

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.26  E-value=0.00067  Score=63.99  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=79.0

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEEC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR----TVKCWDL  290 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~i~~wd~  290 (479)
                      +.+.-+.|.++..+++|++++.+.....+.+.|+.+|.....=+...+-|...+|||++++++-+--+|    .|+++|+
T Consensus       397 ~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm  476 (668)
T COG4946         397 IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDM  476 (668)
T ss_pred             eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEec
Confidence            344567899999999999999998888899999999987655555667899999999999999775554    7999999


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEE
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT  322 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  322 (479)
                      ..++......   +.+.=++-+|+|++++|.-
T Consensus       477 ~~~Kiy~vTT---~ta~DfsPaFD~d~ryLYf  505 (668)
T COG4946         477 DGGKIYDVTT---PTAYDFSPAFDPDGRYLYF  505 (668)
T ss_pred             CCCeEEEecC---CcccccCcccCCCCcEEEE
Confidence            8766432211   1222245677888877654

>KOG2695|consensus

Probab=98.24  E-value=7.7e-06  Score=73.63  Aligned_cols=164  Identities=21%  Similarity=0.287  Sum_probs=97.2

Q ss_pred             EEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEE
Q psy8895         277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRL  356 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~i  356 (479)
                      ++.|.+-.+-+-|++++-...    ....+.|++..|...+..+..|+..|.|..+|++....                 
T Consensus       228 fs~G~sqqv~L~nvetg~~qs----f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-----------------  286 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS----FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-----------------  286 (425)
T ss_pred             ecccccceeEEEEeecccccc----cccchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----------------
Confidence            445556666777776543211    12344566666666666666666655555555432100                 


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEc-CCcEEEEeCCCCeE---EeeecCCcceEEEE--EEcC-CCEEE
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASAS-PDNIKQWKCPEGKF---IQNLPGHNAIINSI--CVNN-EGVLV  428 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s-~d~i~~w~~~~~~~---~~~~~~h~~~v~~l--~~~~-~~~l~  428 (479)
                         ..+.+...+ .|+++|+++.... +.+.|.+++ +++|++||+.--++   +....||-..-.-+  -+.+ +|.++
T Consensus       287 ---G~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~  362 (425)
T KOG2695|consen  287 ---GNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIF  362 (425)
T ss_pred             ---CCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEE
Confidence               012233344 5899999998766 455554444 55799999976666   67777885432222  2233 45899


Q ss_pred             EEeCCCcEEEEecCCCeEEEEEEEeEecCCCC--CceEEeeehhh
Q psy8895         429 SGADNGTMCFWDWRTGYNFQRLQVRCVSGFPK--PSVFFFFLAFS  471 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  471 (479)
                      ++++|...|||.++.|..      .|.-+||.  .+..-.++||+
T Consensus       363 s~GdDcytRiWsl~~ghL------l~tipf~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  363 SVGDDCYTRIWSLDSGHL------LCTIPFPYSASEVDIPSVAFD  401 (425)
T ss_pred             EccCeeEEEEEecccCce------eeccCCCCccccccccceehh
Confidence            999999999999999854      45555542  33233445543

>KOG4532|consensus

Probab=98.22  E-value=0.00015  Score=63.38  Aligned_cols=175  Identities=16%  Similarity=0.101  Sum_probs=104.9

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC-CCCCCCCCeEEE
Q psy8895         233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP-GSMDSESGIFSM  311 (479)
Q Consensus       233 ~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~  311 (479)
                      .+.-++.|.++++.++..+.......-..-.+.++++++|++++++.++...|-.|.+......... ...+....-++.
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            3556778899999988766543332212223789999999999999999999999988643322111 001112233444


Q ss_pred             EEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe-eEE----EEccCCCceEEEEEeCCC--
Q psy8895         312 TFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK-SLC----TLTNHKKSVRSVALHPTL--  384 (479)
Q Consensus       312 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~-~~~----~~~~h~~~v~~i~~~~~~--  384 (479)
                      .|+....                         .++++++||++.|||++... +..    +-..|.++++.+.|++.+  
T Consensus       210 S~s~~~~-------------------------~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l  264 (344)
T KOG4532|consen  210 SFSENDL-------------------------QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL  264 (344)
T ss_pred             eeccCcc-------------------------eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc
Confidence            4444333                         35667777777777776532 111    223488999999999754  


Q ss_pred             -cEEEEEcCCcEEEEeCCCCeEEeeec-------CCcc-eEEEEEEcCCC-EEEEEeC
Q psy8895         385 -YMFASASPDNIKQWKCPEGKFIQNLP-------GHNA-IINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       385 -~~l~s~s~d~i~~w~~~~~~~~~~~~-------~h~~-~v~~l~~~~~~-~l~sg~~  432 (479)
                       -+|.+-.-..+.+-|..+++..+.+.       .|.. .+..-+|+.++ -+.+..+
T Consensus       265 DLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  265 DLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             eEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence             24455555567888887776543321       2322 25666676655 3443333

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.21  E-value=0.0015  Score=59.78  Aligned_cols=224  Identities=19%  Similarity=0.234  Sum_probs=134.7

Q ss_pred             EEEEcC-CCcEEEEEeCCC-eEEEEECCCCceEEEEecCCcCE--EEEEEcCCCCEEEEEE-----CCCcEEEEECCC-C
Q psy8895         224 CVAVEP-GNEWFATGSADK-IIKVWDLATGKLKLSLTGHVGSV--RGLTVSPRHPYLFSCG-----DDRTVKCWDLEY-N  293 (479)
Q Consensus       224 ~~~~~~-~g~~l~sgs~d~-~i~iWd~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~-----~d~~i~~wd~~~-~  293 (479)
                      .++.+| .+..++.+-.-| ...+||..+++....+....+.-  -.-.||+||++|++.-     ..|.|-+||.+. .
T Consensus         9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~   88 (305)
T PF07433_consen    9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY   88 (305)
T ss_pred             ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence            456666 455666666655 46789999998876654333221  1347999999999863     347999999972 2


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE--E--c
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT--L--T  369 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~--~--~  369 (479)
                      +..-+...  ..-..-.+.+.|++..|+++..  -|... .+..    ...|=-...+-++-+.|..+++.+..  +  .
T Consensus        89 ~ri~E~~s--~GIGPHel~l~pDG~tLvVANG--GI~Th-pd~G----R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   89 RRIGEFPS--HGIGPHELLLMPDGETLVVANG--GIETH-PDSG----RAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEEeEecC--CCcChhhEEEcCCCCEEEEEcC--CCccC-cccC----ceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            22222111  1122345778899988877632  11110 0000    00011112334455667777776665  4  2


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCC-----c---EEEEeCCCCeEEeeec-------CCcceEEEEEEcCCC-EE-EEEeC
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPD-----N---IKQWKCPEGKFIQNLP-------GHNAIINSICVNNEG-VL-VSGAD  432 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d-----~---i~~w~~~~~~~~~~~~-------~h~~~v~~l~~~~~~-~l-~sg~~  432 (479)
                      -|+-+|+.+++.+++..+......     .   +-+++....  +..+.       .-...+-++++++++ .+ +|+=.
T Consensus       160 ~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr  237 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR  237 (305)
T ss_pred             ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence            377899999999998877665422     1   334443321  22121       223568899999988 44 55556


Q ss_pred             CCcEEEEecCCCeEEEEEEEeEecCC
Q psy8895         433 NGTMCFWDWRTGYNFQRLQVRCVSGF  458 (479)
Q Consensus       433 dg~i~lWd~~~~~~~~~~~~~~~~~~  458 (479)
                      -+.+.+||..+|..+....+.-.++.
T Consensus       238 Gg~~~~~d~~tg~~~~~~~l~D~cGv  263 (305)
T PF07433_consen  238 GGRVAVWDAATGRLLGSVPLPDACGV  263 (305)
T ss_pred             CCEEEEEECCCCCEeeccccCceeee
Confidence            78899999999999888777755544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.21  E-value=0.0031  Score=59.64  Aligned_cols=211  Identities=10%  Similarity=0.067  Sum_probs=123.4

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCCcccCCCCC-C----CC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKCWDLEYNKAPVQPGSM-D----SE  305 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~-~----~~  305 (479)
                      +.|.+.|..+++.+.++..-..+- .+ ++||++.++.+.          .+..|.+||..+.+........ .    ..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~  104 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG  104 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence            789999999999888876544333 34 999999887664          4789999999887654322110 0    11


Q ss_pred             CCeEEEEEeCCCCEEEEEe-C-CCeEEEEeCCCCCC------CCCCeEEEE--------eCCCcEEEEECCC-Cee-EEE
Q psy8895         306 SGIFSMTFDNSGSRLITTE-A-DKTVKLYKEDDSAT------EESHPVITG--------SHDCTIRLWDLAA-GKS-LCT  367 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~-~-d~~i~~~~~~~~~~------~~~~~l~sg--------s~d~~v~iwd~~~-~~~-~~~  367 (479)
                      .....++++|+|+++.+.. . +..+.+.|......      +....++..        +.||......+.+ ++. ..+
T Consensus       105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEee
Confidence            2234688899999988765 3 67899998766432      222333333        2344333322221 111 111


Q ss_pred             Ecc-CC--Cce-EEEEEeC-CCcEEEEEcCCcEEEEeCCCC-----eEEeeec-------CCcceEEEEEEcCCC-EEEE
Q psy8895         368 LTN-HK--KSV-RSVALHP-TLYMFASASPDNIKQWKCPEG-----KFIQNLP-------GHNAIINSICVNNEG-VLVS  429 (479)
Q Consensus       368 ~~~-h~--~~v-~~i~~~~-~~~~l~s~s~d~i~~w~~~~~-----~~~~~~~-------~h~~~v~~l~~~~~~-~l~s  429 (479)
                      .+- +.  .++ ..-.|.+ ++.++..+..+.+.+-|+...     +.+..+.       ...+...-+++++++ .+..
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV  264 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYL  264 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEE
Confidence            110 10  000 0003345 676666666677888885332     2222221       133445568999887 5444


Q ss_pred             Ee----------CCCcEEEEecCCCeEEEEEEEe
Q psy8895         430 GA----------DNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       430 g~----------~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ..          ..+.|.++|.++++.+.++.+-
T Consensus       265 ~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG  298 (352)
T TIGR02658       265 LADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG  298 (352)
T ss_pred             EecCCccccccCCCCEEEEEECCCCeEEEEEeCC
Confidence            21          2258999999999988877543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG0309|consensus

Probab=98.19  E-value=6e-06  Score=81.31  Aligned_cols=198  Identities=21%  Similarity=0.368  Sum_probs=127.2

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCc--CEEEEEEcCCC--C-EEEEEECCCcEEEEECCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVG--SVRGLTVSPRH--P-YLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~--~v~~v~~~~~~--~-~l~s~~~d~~i~~wd~~~  292 (479)
                      .+++.++.++|.|+-+|.++.-|.. +-|+... ....-+. |..  .|-.+.|+|..  . ++++-+. ..-.+|++..
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~-qkaiiwnlA~  100 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSN-QKAIIWNLAK  100 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCc-chhhhhhhhc
Confidence            3567788999999999999887754 4466433 2222222 322  35566777643  2 3444333 3445787753


Q ss_pred             CCc-ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEcc
Q psy8895         293 NKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTN  370 (479)
Q Consensus       293 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~  370 (479)
                      ... .......++..++..+.|.++..                        ..+++++-|..+..||++.. .+++....
T Consensus       101 ss~~aIef~lhghsraitd~n~~~q~p------------------------dVlatcsvdt~vh~wd~rSp~~p~ys~~~  156 (1081)
T KOG0309|consen  101 SSSNAIEFVLHGHSRAITDINFNPQHP------------------------DVLATCSVDTYVHAWDMRSPHRPFYSTSS  156 (1081)
T ss_pred             CCccceEEEEecCccceeccccCCCCC------------------------cceeeccccccceeeeccCCCcceeeeec
Confidence            211 11111234445566666655432                        23677778888888888764 34554443


Q ss_pred             CCCceEEEEEeC-CCcEEEEEcCCcEEEEeCCCC-eEEeeecCCcceEEEEEEcCC--CEEEEEeCCCcEEEEecCC
Q psy8895         371 HKKSVRSVALHP-TLYMFASASPDNIKQWKCPEG-KFIQNLPGHNAIINSICVNNE--GVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       371 h~~~v~~i~~~~-~~~~l~s~s~d~i~~w~~~~~-~~~~~~~~h~~~v~~l~~~~~--~~l~sg~~dg~i~lWd~~~  443 (479)
                      -...-..++|+- +...+|+.....+.+||...| ..+..+++|-..|+.+.|+.-  +.+.+.+.|++|++||...
T Consensus       157 w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k  233 (1081)
T KOG0309|consen  157 WRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK  233 (1081)
T ss_pred             ccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence            334557788875 456666666667999998765 568899999999999998753  4799999999999999763

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.18  E-value=0.00048  Score=75.36  Aligned_cols=183  Identities=11%  Similarity=0.177  Sum_probs=117.5

Q ss_pred             EEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecC-----------------CcCEEEEEEcC-CCCEEEEEECC
Q psy8895         222 VRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGH-----------------VGSVRGLTVSP-RHPYLFSCGDD  282 (479)
Q Consensus       222 v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h-----------------~~~v~~v~~~~-~~~~l~s~~~d  282 (479)
                      -..++++++++.| ++-...+.|+++|..++.. .++.+-                 -..-..++++| ++..+++.+.+
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            3678888887755 4444567899999877643 233210                 01235789999 56666777788


Q ss_pred             CcEEEEECCCCCcccCC---------CCC---CCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCC-----------
Q psy8895         283 RTVKCWDLEYNKAPVQP---------GSM---DSESGIFSMTFDNSGSRL-ITTEADKTVKLYKEDDSA-----------  338 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~---------~~~---~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~-----------  338 (479)
                      +.|++||...+......         ...   ..-.....++++|++..+ ++.+.++.|+.|+.....           
T Consensus       705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~  784 (1057)
T PLN02919        705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF  784 (1057)
T ss_pred             CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence            99999998654321100         000   011234568999998855 455566889999865311           


Q ss_pred             ---------------------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEc-------------cCCCceEEE
Q psy8895         339 ---------------------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLT-------------NHKKSVRSV  378 (479)
Q Consensus       339 ---------------------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-------------~h~~~v~~i  378 (479)
                                                 ..++..+++-+.++.|++||..++.......             ..-.....|
T Consensus       785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI  864 (1057)
T PLN02919        785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL  864 (1057)
T ss_pred             CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence                                       0122356667778899999998765442221             111246789


Q ss_pred             EEeCCCcEEEEEcCCc-EEEEeCCCCeE
Q psy8895         379 ALHPTLYMFASASPDN-IKQWKCPEGKF  405 (479)
Q Consensus       379 ~~~~~~~~l~s~s~d~-i~~w~~~~~~~  405 (479)
                      ++++++.++++.+.++ |++||..+++.
T Consensus       865 avd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        865 ALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            9999999888877665 99999988754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.17  E-value=0.0012  Score=60.31  Aligned_cols=213  Identities=18%  Similarity=0.245  Sum_probs=125.3

Q ss_pred             CCeEEEEECCCC--ce-EEEEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEECCC--CCcccCCCCCCCCCCeEEE
Q psy8895         240 DKIIKVWDLATG--KL-KLSLTGHVGSVRGLTVSPRHPYLFSCGD---DRTVKCWDLEY--NKAPVQPGSMDSESGIFSM  311 (479)
Q Consensus       240 d~~i~iWd~~~~--~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~~wd~~~--~~~~~~~~~~~~~~~i~~~  311 (479)
                      +.-|.+|++.+.  +. ....-.+.+..+-|+++|+++.|.++-.   ++.|..|.+..  ++...............-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            467999998743  22 1123345567789999999999988743   57788777754  3332221111222334678


Q ss_pred             EEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc----------eEEEEE
Q psy8895         312 TFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS----------VRSVAL  380 (479)
Q Consensus       312 ~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~----------v~~i~~  380 (479)
                      ++++++++++++... +.|.++.....              |.+       +.++.. ..|.+.          +....+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~d--------------G~l-------~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~  152 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQAD--------------GSL-------QPVVQV-VKHTGSGPHERQESPHVHSANF  152 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccC--------------Ccc-------ccceee-eecCCCCCCccccCCccceeee
Confidence            889999888877643 45555544321              110       001111 112222          678889


Q ss_pred             eCCCcEEEEEcC--CcEEEEeCCCCeEEeeec---CCcceEEEEEEcCCCE--EEEEeCCCcEEEEecCCC-eEEEEEEE
Q psy8895         381 HPTLYMFASASP--DNIKQWKCPEGKFIQNLP---GHNAIINSICVNNEGV--LVSGADNGTMCFWDWRTG-YNFQRLQV  452 (479)
Q Consensus       381 ~~~~~~l~s~s~--d~i~~w~~~~~~~~~~~~---~h~~~v~~l~~~~~~~--l~sg~~dg~i~lWd~~~~-~~~~~~~~  452 (479)
                      .|+++++.+...  |+|.++++..|++...-.   .....-.-+.|.|++.  .+..=.+++|.+|..... ..+..+| 
T Consensus       153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ-  231 (346)
T COG2706         153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ-  231 (346)
T ss_pred             CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee-
Confidence            999998888764  569999998887643211   1223345578999993  334556899999999874 3333333 


Q ss_pred             eEecCCCC---CceEEeeehhhhcccc
Q psy8895         453 RCVSGFPK---PSVFFFFLAFSYLNRV  476 (479)
Q Consensus       453 ~~~~~~~~---~~~~~~~~~~~~~~~~  476 (479)
                       .+...|.   +.-+.-++.++.-|||
T Consensus       232 -~i~tlP~dF~g~~~~aaIhis~dGrF  257 (346)
T COG2706         232 -TIDTLPEDFTGTNWAAAIHISPDGRF  257 (346)
T ss_pred             -eeccCccccCCCCceeEEEECCCCCE
Confidence             3444442   2233444555555554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.16  E-value=0.0026  Score=62.53  Aligned_cols=191  Identities=12%  Similarity=0.038  Sum_probs=109.1

Q ss_pred             cEEEEEEcCCCcE-EEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECC--CcEEEEECCCC
Q psy8895         221 WVRCVAVEPGNEW-FATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDD--RTVKCWDLEYN  293 (479)
Q Consensus       221 ~v~~~~~~~~g~~-l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d--~~i~~wd~~~~  293 (479)
                      ....-.|+|||+. ++..+.+   ..|.++|+.+++...... ..+......|+|||+.++. .+.+  ..|.++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6778899999984 5544433   468888998886654332 4455666789999987664 3333  46777787665


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK  373 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~  373 (479)
                      ......   .....-....|+|+|+.++-.+...                      ....|.+.|+.+++...... ...
T Consensus       268 ~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~----------------------g~~~Iy~~dl~~g~~~rlt~-~g~  321 (419)
T PRK04043        268 TLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRL----------------------GYPNIFMKKLNSGSVEQVVF-HGK  321 (419)
T ss_pred             cEEEcc---cCCCccCccEECCCCCEEEEEECCC----------------------CCceEEEEECCCCCeEeCcc-CCC
Confidence            432111   1111122457899998776554321                      11246667776665422211 111


Q ss_pred             ceEEEEEeCCCcEEEEEcCC----------cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe-CCCc--EEEE
Q psy8895         374 SVRSVALHPTLYMFASASPD----------NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA-DNGT--MCFW  439 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d----------~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg~--i~lW  439 (479)
                      .  ...|+|++..++-.+..          .+.+.|..+++. ..+.... ......|+||| .++-.+ ..+.  +.+.
T Consensus       322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~  397 (419)
T PRK04043        322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGII  397 (419)
T ss_pred             c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence            1  24899999877655422          366778777654 3333322 22356889999 444333 3334  4444


Q ss_pred             ecC
Q psy8895         440 DWR  442 (479)
Q Consensus       440 d~~  442 (479)
                      ++.
T Consensus       398 ~l~  400 (419)
T PRK04043        398 RLN  400 (419)
T ss_pred             ecC
Confidence            543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.15  E-value=6.8e-05  Score=66.71  Aligned_cols=120  Identities=15%  Similarity=0.212  Sum_probs=81.6

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC---ceEEEEecCC-----cCEEEEEEcCCCCE-EEEEECCCcEE
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG---KLKLSLTGHV-----GSVRGLTVSPRHPY-LFSCGDDRTVK  286 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~---~~~~~~~~h~-----~~v~~v~~~~~~~~-l~s~~~d~~i~  286 (479)
                      ..|.--+.+++|+.|.+.++|+ .|-.|.+|++.--   --+..++.|.     .-|++..|+|.-.. +.-.+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            4688889999999998888876 4678999998633   1233445554     35788899997543 44567789999


Q ss_pred             EEECCCCCcc-----c-C--------CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895         287 CWDLEYNKAP-----V-Q--------PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS  337 (479)
Q Consensus       287 ~wd~~~~~~~-----~-~--------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  337 (479)
                      +-|++....-     . .        ....+..+.|..+.|+++|+++++-. --++++||....
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~  311 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMA  311 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccc
Confidence            9999732211     0 0        00111235678899999998876543 358999997654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.14  E-value=0.0013  Score=60.00  Aligned_cols=198  Identities=18%  Similarity=0.217  Sum_probs=115.2

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCC-----CeEEEEECC-CCceEEEEecCCcCEEEEEEcCCCCEEEEE--E-----
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSAD-----KIIKVWDLA-TGKLKLSLTGHVGSVRGLTVSPRHPYLFSC--G-----  280 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d-----~~i~iWd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~--~-----  280 (479)
                      -|.||.      .|++||++|++.-.|     |.|-|||.. +-+.+.++..|--.-..+.+.||++.|+.+  +     
T Consensus        51 HFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thp  124 (305)
T PF07433_consen   51 HFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHP  124 (305)
T ss_pred             EEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence            456773      789999999986654     689999998 556677887775445677889999777654  1     


Q ss_pred             CCCcEEE-----------EECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895         281 DDRTVKC-----------WDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT  347 (479)
Q Consensus       281 ~d~~i~~-----------wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s  347 (479)
                      +.|.-++           -|..+++...+  .....+...|..+++.++|..++..-..+         .......+++.
T Consensus       125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg---------~~~~~~PLva~  195 (305)
T PF07433_consen  125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQG---------DPGDAPPLVAL  195 (305)
T ss_pred             ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCC---------CCCccCCeEEE
Confidence            1122232           22222222111  00011233455666666554443322111         11111233444


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG  425 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~  425 (479)
                      -..+..++..++....    ...-..++-+|++++++..++.++..  .+.+||..+++++....-  ..+..++..+++
T Consensus       196 ~~~g~~~~~~~~p~~~----~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~  269 (305)
T PF07433_consen  196 HRRGGALRLLPAPEEQ----WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG  269 (305)
T ss_pred             EcCCCcceeccCChHH----HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence            4444445544443211    11234689999999999988888866  389999999998765432  234556666777


Q ss_pred             EEEEEeC
Q psy8895         426 VLVSGAD  432 (479)
Q Consensus       426 ~l~sg~~  432 (479)
                      +++|.+.
T Consensus       270 f~~ssG~  276 (305)
T PF07433_consen  270 FLVSSGQ  276 (305)
T ss_pred             eEEeCCC
Confidence            7776554

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.12  E-value=0.0021  Score=63.05  Aligned_cols=209  Identities=11%  Similarity=0.059  Sum_probs=124.7

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCC-----
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG-LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS-----  304 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~-v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----  304 (479)
                      +..++.++.++.+..+|.++|+.++...... .+.+ -.+. ++ .++.+..++.+..+|.++++..........     
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            4566777889999999999999887765432 2222 1122 33 566677788999999988775433211000     


Q ss_pred             --CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------C-----------------CCCCeEEEEeCCCcEEE
Q psy8895         305 --ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------T-----------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       305 --~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------~-----------------~~~~~l~sgs~d~~v~i  356 (479)
                        ..++  +  .  +..++.+..++.+.-++..+..         .                 -....++.++.++.+..
T Consensus       197 ~~~sP~--v--~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a  270 (394)
T PRK11138        197 GESAPA--T--A--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA  270 (394)
T ss_pred             CCCCCE--E--E--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEE
Confidence              0111  1  1  1234445555555444332210         0                 01234667788999999


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCc-ceEEEEEEcCCCEEEEEeCCCc
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHN-AIINSICVNNEGVLVSGADNGT  435 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~-~~v~~l~~~~~~~l~sg~~dg~  435 (479)
                      +|..+++.+.+...  .....+... ++.+++...++.+...|..+|+.+-....-. ....+..+ -++.|+.++.||.
T Consensus       271 ld~~tG~~~W~~~~--~~~~~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v-~~g~l~v~~~~G~  346 (394)
T PRK11138        271 LDLRSGQIVWKREY--GSVNDFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL-YNGYLVVGDSEGY  346 (394)
T ss_pred             EECCCCCEEEeecC--CCccCcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-ECCEEEEEeCCCE
Confidence            99999988776532  111222222 4556666666678888988887653322111 11111122 2678888999999


Q ss_pred             EEEEecCCCeEEEEEEE
Q psy8895         436 MCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       436 i~lWd~~~~~~~~~~~~  452 (479)
                      +.+.|.++|+.+.+.++
T Consensus       347 l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        347 LHWINREDGRFVAQQKV  363 (394)
T ss_pred             EEEEECCCCCEEEEEEc
Confidence            99999999998877665

>KOG2041|consensus

Probab=98.12  E-value=0.00062  Score=67.38  Aligned_cols=173  Identities=12%  Similarity=0.074  Sum_probs=101.5

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc-
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP-  296 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-  296 (479)
                      ...|.+++|+.||..|...-.||.|.+=.+...+. -+.+++.  ....+.|++|.+.++.+-.+|.+.++|-+..-.. 
T Consensus       115 KSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~K  192 (1189)
T KOG2041|consen  115 KSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERK  192 (1189)
T ss_pred             ccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHHHHhhhcCCcEEEecccccHHHh
Confidence            35678899999999888888888876655543322 0122221  1236789999888887878899999986532110 


Q ss_pred             ------cC-C-CCCCCCCCeEEEEE--------eCCCCEEEEEeCCCeEEEEeCCCCCC----------------CCCCe
Q psy8895         297 ------VQ-P-GSMDSESGIFSMTF--------DNSGSRLITTEADKTVKLYKEDDSAT----------------EESHP  344 (479)
Q Consensus       297 ------~~-~-~~~~~~~~i~~~~~--------~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~  344 (479)
                            .. . ........|..+.|        .|+-..++++-..|.+.+-...+...                ..+..
T Consensus       193 l~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~v  272 (1189)
T KOG2041|consen  193 LEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAV  272 (1189)
T ss_pred             hhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcE
Confidence                  00 0 00011112333333        34566788888888777654333211                22334


Q ss_pred             EEEEeCC---------CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc
Q psy8895         345 VITGSHD---------CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN  394 (479)
Q Consensus       345 l~sgs~d---------~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~  394 (479)
                      ++.++.|         +.|.++.. -|+.+.+++-....|++++|-..+-.+|-+-+.-
T Consensus       273 LAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Avdsf  330 (1189)
T KOG2041|consen  273 LAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSF  330 (1189)
T ss_pred             EEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEEEecce
Confidence            5544432         24455442 2566777877778899998887776666555543

>KOG2066|consensus

Probab=98.11  E-value=0.00029  Score=70.66  Aligned_cols=141  Identities=13%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC-----CCEEEEEECCCcEEEEECCCCCcccCCCCCCC
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR-----HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS  304 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~  304 (479)
                      +|++++|+|.||+|.|-.+-+.+...++. ...++.+++++|+     .+++++||.-| +.++.-+--...........
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            49999999999999999998877665544 3458999999998     45788999888 76764211000001111234


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce------EEE
Q psy8895         305 ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV------RSV  378 (479)
Q Consensus       305 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v------~~i  378 (479)
                      .+.|.++.|..  +.+                          .-..|--|++||..+.+.+..++.....+      ..+
T Consensus       160 eG~I~~i~W~g--~lI--------------------------AWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl  211 (846)
T KOG2066|consen  160 EGPIHSIKWRG--NLI--------------------------AWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHL  211 (846)
T ss_pred             ccceEEEEecC--cEE--------------------------EEecCCCcEEEeccccceeeccCCCCCCCCcccCCCce
Confidence            56677777653  222                          22334458888888887777665443333      345


Q ss_pred             EEeCCCcEEEEEcCCcEEEEeCC
Q psy8895         379 ALHPTLYMFASASPDNIKQWKCP  401 (479)
Q Consensus       379 ~~~~~~~~l~s~s~d~i~~w~~~  401 (479)
                      .|.++. .++-|..++|++..+.
T Consensus       212 ~W~~~~-~LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  212 HWQDED-RLVIGWGDSVKICSIK  233 (846)
T ss_pred             EecCCC-eEEEecCCeEEEEEEe
Confidence            666544 4556666767666654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.10  E-value=0.003  Score=60.69  Aligned_cols=189  Identities=15%  Similarity=0.237  Sum_probs=106.0

Q ss_pred             CeEEEEEC--CCCceE--EEEecCCcCEEEEEEcCCCCEEEEEEC----CCcEEEEECCCC-CcccCCCCCC-CCCCeEE
Q psy8895         241 KIIKVWDL--ATGKLK--LSLTGHVGSVRGLTVSPRHPYLFSCGD----DRTVKCWDLEYN-KAPVQPGSMD-SESGIFS  310 (479)
Q Consensus       241 ~~i~iWd~--~~~~~~--~~~~~h~~~v~~v~~~~~~~~l~s~~~----d~~i~~wd~~~~-~~~~~~~~~~-~~~~i~~  310 (479)
                      +.|..|++  .+++..  .... .......++++|++++|++..+    ++.|..|++... .......... .......
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~   91 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH   91 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence            57777777  444432  2221 2234567889999999998866    568988887653 1111111111 2334567


Q ss_pred             EEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc----------cCCCceEEEE
Q psy8895         311 MTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT----------NHKKSVRSVA  379 (479)
Q Consensus       311 ~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~----------~h~~~v~~i~  379 (479)
                      +.+++++++++++.. ++.+.++++...              |.+.       .....+.          .-..-..++.
T Consensus        92 i~~~~~g~~l~vany~~g~v~v~~l~~~--------------g~l~-------~~~~~~~~~g~g~~~~rq~~~h~H~v~  150 (345)
T PF10282_consen   92 IAVDPDGRFLYVANYGGGSVSVFPLDDD--------------GSLG-------EVVQTVRHEGSGPNPDRQEGPHPHQVV  150 (345)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTT--------------SEEE-------EEEEEEESEEEESSTTTTSSTCEEEEE
T ss_pred             EEEecCCCEEEEEEccCCeEEEEEccCC--------------cccc-------eeeeecccCCCCCcccccccccceeEE
Confidence            888888888777653 445555444321              1100       0100110          0123467899


Q ss_pred             EeCCCcEEEEEc--CCcEEEEeCCCCe--EE--eeec-CCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecC--CCeEEE
Q psy8895         380 LHPTLYMFASAS--PDNIKQWKCPEGK--FI--QNLP-GHNAIINSICVNNEG-V-LVSGADNGTMCFWDWR--TGYNFQ  448 (479)
Q Consensus       380 ~~~~~~~l~s~s--~d~i~~w~~~~~~--~~--~~~~-~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~--~~~~~~  448 (479)
                      ++|+++.+....  .|.|.+++.....  +.  ..+. .......-+.|+|++ + .+..-.+++|.++++.  +| .++
T Consensus       151 ~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g-~~~  229 (345)
T PF10282_consen  151 FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDG-SLT  229 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT-EEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCC-cee
Confidence            999998776664  4468888876544  32  2222 233446678999998 4 4666678999999998  44 444


Q ss_pred             EEEE
Q psy8895         449 RLQV  452 (479)
Q Consensus       449 ~~~~  452 (479)
                      ..|.
T Consensus       230 ~~~~  233 (345)
T PF10282_consen  230 EIQT  233 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.10  E-value=0.0011  Score=58.85  Aligned_cols=199  Identities=16%  Similarity=0.224  Sum_probs=110.3

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-C------CcCEEEEEEcCCC------CEEEEEECCCcEEEEE
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-H------VGSVRGLTVSPRH------PYLFSCGDDRTVKCWD  289 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-h------~~~v~~v~~~~~~------~~l~s~~~d~~i~~wd  289 (479)
                      +-++|+||+.+||.+...|+|+++|+....+ ..+.. +      ...|..|.|-+-.      ..|+.-..+|.++-+-
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~  125 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL  125 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence            4578999999999999999999999875333 23221 1      2356666664321      1355556777777776


Q ss_pred             CCC--CCcc---cCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         290 LEY--NKAP---VQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       290 ~~~--~~~~---~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      +..  .+..   ... .......+|.++.++|..+.+++|+....-      .        ..+...+.-+.-|.+-.+.
T Consensus       126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~------~--------~~s~a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQ------D--------GMSKASSCGLTAWRILSDS  191 (282)
T ss_pred             EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCC------C--------ccccccccCceEEEEcCCC
Confidence            521  1111   110 111234578899999988888777653320      0        0011122234445444443


Q ss_pred             eEEEEcc-CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         364 SLCTLTN-HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       364 ~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +.+.... -+..+.             .....-.+|.+.+.+...........|..+.+|||| .||+...+|+|.+|++
T Consensus       192 Pyyk~v~~~~~~~~-------------~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i  258 (282)
T PF15492_consen  192 PYYKQVTSSEDDIT-------------ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI  258 (282)
T ss_pred             CcEEEccccCcccc-------------ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence            3322110 001110             000111233333222222222345678899999999 8999999999999999


Q ss_pred             CCCeEEEE
Q psy8895         442 RTGYNFQR  449 (479)
Q Consensus       442 ~~~~~~~~  449 (479)
                      .+=...+.
T Consensus       259 PsL~~~~~  266 (282)
T PF15492_consen  259 PSLRLQRS  266 (282)
T ss_pred             Ccchhhcc
Confidence            87433333

>KOG2695|consensus

Probab=98.09  E-value=5.9e-06  Score=74.33  Aligned_cols=130  Identities=22%  Similarity=0.288  Sum_probs=90.3

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-----ceEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-----KLKLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-----~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+.|.++.|...++++..|+.+|.|...|++.+     .+...+. |...|+++..-. ++++|++.+.+|+|++||.+.
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            356778888888899999999999999999865     3333343 888899888766 677899999999999999975


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      -++....  ..-++.+...++.|-                    ...++...+++++.|...|||.++.+..+.+++-.
T Consensus       331 ~K~~~~V--~qYeGHvN~~a~l~~--------------------~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  331 TKCKKSV--MQYEGHVNLSAYLPA--------------------HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             hhcccce--eeeeccccccccccc--------------------ccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            5442111  011111211111110                    01123345778999999999999999998887643

>KOG2066|consensus

Probab=98.07  E-value=0.00016  Score=72.34  Aligned_cols=206  Identities=19%  Similarity=0.222  Sum_probs=129.8

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ...++|++++  +++|+-|.-+|.+.+.+.....  .+...|...      ..+|.+++|||.||++.+--+-+.+....
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3456676765  7899999999999998875432  222234333      56899999999999999987755543322


Q ss_pred             CCCCCCCCCeEEEEEeCC-----CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC
Q psy8895         299 PGSMDSESGIFSMTFDNS-----GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK  373 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~  373 (479)
                         .+-...+-+++++|+     .+.+++|+..| +.++...-.                      .....+ .+..-.+
T Consensus       109 ---~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wl----------------------gnk~~v-~l~~~eG  161 (846)
T KOG2066|consen  109 ---YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWL----------------------GNKDSV-VLSEGEG  161 (846)
T ss_pred             ---EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhh----------------------cCccce-eeecCcc
Confidence               123446778888886     23445554444 333321100                      000111 2333467


Q ss_pred             ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcce------EEEEEEcCCCEEEEEeCCCcEEEEecCCC---
Q psy8895         374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAI------INSICVNNEGVLVSGADNGTMCFWDWRTG---  444 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~------v~~l~~~~~~~l~sg~~dg~i~lWd~~~~---  444 (479)
                      +|.++.|.  +.++|-+++.+++++|..+.+.+..++.....      -..+.+.++..|+-|-. .+|+|..++.+   
T Consensus       162 ~I~~i~W~--g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~-d~v~i~~I~~~~s~  238 (846)
T KOG2066|consen  162 PIHSIKWR--GNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG-DSVKICSIKKRSSS  238 (846)
T ss_pred             ceEEEEec--CcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC-CeEEEEEEeccccc
Confidence            89999985  67888889999999999998887766543332      23456777777887654 58888888732   


Q ss_pred             eEE----EEE-EEeEecCCCCCceE
Q psy8895         445 YNF----QRL-QVRCVSGFPKPSVF  464 (479)
Q Consensus       445 ~~~----~~~-~~~~~~~~~~~~~~  464 (479)
                      +..    ... ++-.+++||.+..+
T Consensus       239 ~a~~~~~~~~~~V~~~s~f~~s~~i  263 (846)
T KOG2066|consen  239 EARSFRLPSLKKVEIVSHFETSFYI  263 (846)
T ss_pred             ccccccCCccceeeeEEEeeeeeee
Confidence            221    112 44457888776553

>KOG0882|consensus

Probab=98.06  E-value=0.00012  Score=68.32  Aligned_cols=224  Identities=16%  Similarity=0.149  Sum_probs=142.6

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEe--cCCcCEEEEEEcC-CCCEE--EEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSP-RHPYL--FSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~-~~~~l--~s~~~d~~i~~w  288 (479)
                      +..|.+.+.+++.+-+|-++.|++. |..+|++|+.+-..+..+.  -..+.+..+ .++ |..-+  ++.-.++.+.++
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~Vv  127 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVV  127 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEE
Confidence            4568888889999999999999887 9999999987654432211  111222211 122 11112  233467899999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      |-....+.......-+..++.++.+.+.+..+++....|.|..|.........          .+-..|.++...-+..+
T Consensus       128 D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP----------r~~l~~~~K~eTdLy~f  197 (558)
T KOG0882|consen  128 DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP----------RTNLNFELKHETDLYGF  197 (558)
T ss_pred             CCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc----------cccccccccccchhhcc
Confidence            97655444333333466789999999999999888888889988765311100          01112444444445555


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec--------------------------------CCcce
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP--------------------------------GHNAI  415 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~--------------------------------~h~~~  415 (479)
                      ..-.....++.|+|++..+++-++|. |++++..+|++++.+.                                -|...
T Consensus       198 ~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~  277 (558)
T KOG0882|consen  198 PKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST  277 (558)
T ss_pred             cccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence            55556678999999999998888874 9999988877544321                                11111


Q ss_pred             -EEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         416 -INSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       416 -v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                       -...+|...+ +|+-|+-= -|++.++.|+...+.+
T Consensus       278 ~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~  313 (558)
T KOG0882|consen  278 VGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRIL  313 (558)
T ss_pred             ccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEe
Confidence             1334566555 66655443 4789999998877654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.02  E-value=0.001  Score=62.89  Aligned_cols=149  Identities=16%  Similarity=0.202  Sum_probs=106.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCC-eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADK-IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~-~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +-.+|.+.|.-..+..+++-++-|..|| .+-|+|..+++. +.+.+--+.|..+..+++|++++.+-....|-+.|+++
T Consensus       354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn  432 (668)
T COG4946         354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN  432 (668)
T ss_pred             EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence            3347888899999998999999999999 899999988765 35566667899999999999988887777888889988


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ++.....  ....+-|....|+|++..++-+-.++.+                     -..|+++|+..++....- ...
T Consensus       433 gnv~~id--kS~~~lItdf~~~~nsr~iAYafP~gy~---------------------tq~Iklydm~~~Kiy~vT-T~t  488 (668)
T COG4946         433 GNVRLID--KSEYGLITDFDWHPNSRWIAYAFPEGYY---------------------TQSIKLYDMDGGKIYDVT-TPT  488 (668)
T ss_pred             CCeeEec--ccccceeEEEEEcCCceeEEEecCccee---------------------eeeEEEEecCCCeEEEec-CCc
Confidence            7654432  2345678999999999988876554432                     234677777765543321 111


Q ss_pred             CceEEEEEeCCCcEE
Q psy8895         373 KSVRSVALHPTLYMF  387 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l  387 (479)
                      ..=.+-+|.|++++|
T Consensus       489 a~DfsPaFD~d~ryL  503 (668)
T COG4946         489 AYDFSPAFDPDGRYL  503 (668)
T ss_pred             ccccCcccCCCCcEE
Confidence            111334666776544

>KOG4532|consensus

Probab=98.01  E-value=0.0009  Score=58.63  Aligned_cols=96  Identities=8%  Similarity=0.027  Sum_probs=72.7

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-e-EE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGK-L-KL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~-~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      +.++++++|++++++.+....|-.|.+.... . .. .....++.-.+..|+.....++++..||++.+||++....+..
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            7789999999999999999999999986542 2 22 1222334456788999988999999999999999987654432


Q ss_pred             ---CCCCCCCCCeEEEEEeCCC
Q psy8895         299 ---PGSMDSESGIFSMTFDNSG  317 (479)
Q Consensus       299 ---~~~~~~~~~i~~~~~~~~~  317 (479)
                         .....+.+.+..+.|++.|
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCC
Confidence               2223477889999998744

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.97  E-value=0.0026  Score=62.36  Aligned_cols=208  Identities=12%  Similarity=0.106  Sum_probs=117.4

Q ss_pred             cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE-EEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCC--
Q psy8895         232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG-LTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES--  306 (479)
Q Consensus       232 ~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~-v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~--  306 (479)
                      ..++.+..++.+..+|.++|+.++.+......... ..-+|  .+..++.++.++.+...|.++++............  
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~  240 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT  240 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence            45666777899999999999988876533111100 00011  12245667788889888887766433211000000  


Q ss_pred             ---CeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCC-------------CCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         307 ---GIFSMTFDN--SGSRLITTEADKTVKLYKEDDSAT-------------EESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       307 ---~i~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~-------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                         ....+...|  .+..++.++.++.+.-+|..+...             .....++.++.|+.+...|..+++.+...
T Consensus       241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~  320 (394)
T PRK11138        241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ  320 (394)
T ss_pred             chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence               000000011  134455555666665555433211             12345777889999999999999877654


Q ss_pred             ccCC-CceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEE-EEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         369 TNHK-KSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIIN-SICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       369 ~~h~-~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~-~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                      .... ....+..+. ++.+++...++.+...|..+|+.+...+-....+. ...+ .++.|+.++.||.+..++.
T Consensus       321 ~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        321 SDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             cccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence            3211 112222222 45666666666788899999998766543322222 2222 3567888899999887654

>KOG2114|consensus

Probab=97.97  E-value=0.0013  Score=66.75  Aligned_cols=197  Identities=17%  Similarity=0.214  Sum_probs=117.9

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEECCC-----cEEEEECCCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGDDR-----TVKCWDLEYNK  294 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~wd~~~~~  294 (479)
                      .+.|  +++++..++.|+.+|.|-+.+- +-+.+..++++... |..+-...+..+|++.+.|+     .+++||++...
T Consensus        27 ~isc--~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~  103 (933)
T KOG2114|consen   27 AISC--CSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD  103 (933)
T ss_pred             ceeE--EcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence            4444  4578899999999998776652 23444677777766 55555544556888877765     48999997432


Q ss_pred             ccc--------C-CC--CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         295 APV--------Q-PG--SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       295 ~~~--------~-~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      ...        . ..  ......++.+++.+.+-+.+++|-.+|.|..+.-+-..            |+         +.
T Consensus       104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R------------Dr---------gs  162 (933)
T KOG2114|consen  104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR------------DR---------GS  162 (933)
T ss_pred             CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh------------cc---------cc
Confidence            111        0 00  01123445566666665666666666655544321100            00         11


Q ss_pred             eEEEEccCCCceEEEEEeCCCcE-EEEEcCCcEEEEeCCCCe-EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         364 SLCTLTNHKKSVRSVALHPTLYM-FASASPDNIKQWKCPEGK-FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~~~-l~s~s~d~i~~w~~~~~~-~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ...-.....++|+.+++..++.. +..+....|..|.+.... ..+.+..|+..++|..+++.. .++.++. .-+.+||
T Consensus       163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~  241 (933)
T KOG2114|consen  163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYD  241 (933)
T ss_pred             ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEc
Confidence            11111234578999999888765 445556668888776333 355688899999999998765 3554443 4566666


Q ss_pred             cC
Q psy8895         441 WR  442 (479)
Q Consensus       441 ~~  442 (479)
                      ..
T Consensus       242 sd  243 (933)
T KOG2114|consen  242 SD  243 (933)
T ss_pred             CC
Confidence            54

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.96  E-value=0.007  Score=55.09  Aligned_cols=206  Identities=14%  Similarity=0.192  Sum_probs=121.0

Q ss_pred             EEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEc-CCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         223 RCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS-PRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       223 ~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .+..|.+ ++.++++--..+.|..|+..++.... +....  ...+++. +++.+ +.+..+ .+.++|+.+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEee
Confidence            4567887 67777777788999999998876543 22222  6677777 66654 444454 45666987664321111


Q ss_pred             C--CC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         301 S--MD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       301 ~--~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      .  .. .......++++++|...++.......          ....       .+.+..++.. ++...... .-...+.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~----------~~~~-------~g~v~~~~~~-~~~~~~~~-~~~~pNG  138 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA----------SGID-------PGSVYRIDPD-GKVTVVAD-GLGFPNG  138 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCT----------TCGG-------SEEEEEEETT-SEEEEEEE-EESSEEE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCcc----------cccc-------ccceEEECCC-CeEEEEec-Ccccccc
Confidence            0  11 33457788888888865554432110          0000       0445555555 33222222 2344689


Q ss_pred             EEEeCCCcEE-EEEcCC-cEEEEeCC--CCeE-----EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         378 VALHPTLYMF-ASASPD-NIKQWKCP--EGKF-----IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       378 i~~~~~~~~l-~s~s~d-~i~~w~~~--~~~~-----~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      |+|+|++..| ++-+.. .|..++..  .++.     ...+..-.+....+++..+| +.++....+.|.++|.+ |+.+
T Consensus       139 i~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  139 IAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred             eEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence            9999999755 454544 47777764  2311     22333334458889999988 55666678999999977 8888


Q ss_pred             EEEEEe
Q psy8895         448 QRLQVR  453 (479)
Q Consensus       448 ~~~~~~  453 (479)
                      ..+++.
T Consensus       218 ~~i~~p  223 (246)
T PF08450_consen  218 REIELP  223 (246)
T ss_dssp             EEEE-S
T ss_pred             EEEcCC
Confidence            777655

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.95  E-value=0.0017  Score=69.83  Aligned_cols=203  Identities=11%  Similarity=0.122  Sum_probs=122.2

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEE----ECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN-  293 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iW----d~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~-  293 (479)
                      .+.|.++.+-++...++.+..+|.|.+.    +..+... .....-...|.+++||||+..|+....++++.+-.-.-. 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~  153 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDP  153 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceE
Confidence            4678899999999999999999999988    5444322 112223568999999999999998888888777532100 


Q ss_pred             ---CcccC----------CC-------CCC------------------------CCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895         294 ---KAPVQ----------PG-------SMD------------------------SESGIFSMTFDNSGSRLITTEADKTV  329 (479)
Q Consensus       294 ---~~~~~----------~~-------~~~------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i  329 (479)
                         .....          .+       ..+                        ....-..++|..||.++++.+.+.. 
T Consensus       154 i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~-  232 (928)
T PF04762_consen  154 ISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE-  232 (928)
T ss_pred             EEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC-
Confidence               00000          00       000                        0011223334444444333321000 


Q ss_pred             EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC--C--cEEEEeCCCCeE
Q psy8895         330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP--D--NIKQWKCPEGKF  405 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~--d--~i~~w~~~~~~~  405 (479)
                                        .+.-+.+|+|+-+ |....+.+.-.+--.+++|-|.|.++|+...  +  .|.+|..+ |-.
T Consensus       233 ------------------~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLr  292 (928)
T PF04762_consen  233 ------------------TGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLR  292 (928)
T ss_pred             ------------------CCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcE
Confidence                              0012578999866 5554444433344467899999999999864  2  37777753 332


Q ss_pred             ----EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         406 ----IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       406 ----~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                          .-.+......|..+.++.|+ .||.--.| .|.+|-..+-
T Consensus       293 hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NY  335 (928)
T PF04762_consen  293 HGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNY  335 (928)
T ss_pred             eeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCC
Confidence                22222445678999999999 66665554 4999986543

>KOG1832|consensus

Probab=97.95  E-value=7.7e-06  Score=82.16  Aligned_cols=192  Identities=18%  Similarity=0.261  Sum_probs=127.9

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC--CcEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD--RTVK  286 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d--~~i~  286 (479)
                      ++..++++.|....+|++|+.+.+.|+.|+-.|.|+++++.+|.......+|...|+-+.-+.||.++++.+.-  .-..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            34456788899999999999999999999999999999999999988999999999999999999988765432  2567


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------CCCCeEEEEeCCCcE-
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------EESHPVITGSHDCTI-  354 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------~~~~~l~sgs~d~~v-  354 (479)
                      +|+....-....     .-..--++.|+...+.-+.|+......+||...+..           ...+.+++=+-+.++ 
T Consensus      1171 LW~~~s~~~~~H-----sf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1171 LWDASSTGGPRH-----SFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred             HhccccccCccc-----cccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence            899854211111     111233677776555555566666778888765421           112233333333333 


Q ss_pred             ----EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895         355 ----RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       355 ----~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~  410 (479)
                          .+||++..+.++.|...... -.=.|+|.+..++.-    -.+||+.+-+++++.+
T Consensus      1246 lndGvLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIIN----SEIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1246 LNDGVLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIIN----SEIWDMRTFKLLHSVP 1300 (1516)
T ss_pred             eeCceeeeeccHHHHhhhhhheec-ccccccCCCceEEee----chhhhhHHHHHHhcCc
Confidence                36888877666665433211 112477877655432    2579988877766543

>smart00320 WD40 WD40 repeats

Probab=97.93  E-value=2.3e-05  Score=47.52  Aligned_cols=36  Identities=28%  Similarity=0.641  Sum_probs=32.1

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEe
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD   61 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd   61 (479)
                      ...+.+|.+.|++++|+|+++++++++.|+.+++||
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.90  E-value=6.1e-05  Score=73.14  Aligned_cols=76  Identities=17%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .....|.|.+++|+.+.++.|+.||+|.+||...+.....  .+.-....++|+|+|..++.|+.-|.+.+||+.-..
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            4678899999999999999999999999999987744322  334456889999999999999999999999986443

>KOG1912|consensus

Probab=97.87  E-value=0.0011  Score=66.45  Aligned_cols=187  Identities=15%  Similarity=0.111  Sum_probs=123.3

Q ss_pred             EecCCCccEEEEEEcCCC------------cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCC---C-CEEE
Q psy8895         214 VISGHLGWVRCVAVEPGN------------EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR---H-PYLF  277 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g------------~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~---~-~~l~  277 (479)
                      .+.-|...|+.+.|.|..            -.||++...|.|.+||...+..+..++.|.+++..++|-+.   . .+|+
T Consensus        50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~Ll  129 (1062)
T KOG1912|consen   50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLL  129 (1062)
T ss_pred             ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeE
Confidence            345677888888886521            25788888899999999999888889999999999998763   3 3555


Q ss_pred             EEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCC---------------CCCC--
Q psy8895         278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKED---------------DSAT--  339 (479)
Q Consensus       278 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~---------------~~~~--  339 (479)
                      .-..-.++-+|+..+++.......  ......|+.++|-. ..+..-+..|.+..-+.-               ....  
T Consensus       130 aIh~ss~lvLwntdtG~k~Wk~~y--s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl  207 (1062)
T KOG1912|consen  130 AIHGSSTLVLWNTDTGEKFWKYDY--SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL  207 (1062)
T ss_pred             EecCCcEEEEEEccCCceeecccc--CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence            666678999999888765443321  12345567777743 344444444444333211               1000  


Q ss_pred             ----------------C----------------CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc--
Q psy8895         340 ----------------E----------------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY--  385 (479)
Q Consensus       340 ----------------~----------------~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--  385 (479)
                                      +                .-..++-....+.+.++|++-..++....-.++.+.-+.+-|+.+  
T Consensus       208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd  287 (1062)
T KOG1912|consen  208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD  287 (1062)
T ss_pred             hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence                            0                001123344567899999998888888777777888889888753  


Q ss_pred             -EEEEEcCCcEEEEeCCC
Q psy8895         386 -MFASASPDNIKQWKCPE  402 (479)
Q Consensus       386 -~l~s~s~d~i~~w~~~~  402 (479)
                       +|..-.++.+.+|-.+.
T Consensus       288 ~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  288 ALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEEecCCeEEEEEeec
Confidence             44555566688886543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.86  E-value=0.003  Score=56.18  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=31.0

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       260 h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      ..+.|..|.+||||..|++.+.+|.|.+|++...+
T Consensus       228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~  262 (282)
T PF15492_consen  228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR  262 (282)
T ss_pred             CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence            45689999999999999999999999999986544

>KOG1645|consensus

Probab=97.84  E-value=0.0012  Score=61.15  Aligned_cols=166  Identities=13%  Similarity=0.139  Sum_probs=88.3

Q ss_pred             CcEEEEEeCCCeEEEEECCCCce-EEEEec--CCcCEEEEEE------cCCCCEEEEEECCCcEEEEECCCCCc-ccCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKL-KLSLTG--HVGSVRGLTV------SPRHPYLFSCGDDRTVKCWDLEYNKA-PVQPG  300 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~--h~~~v~~v~~------~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~  300 (479)
                      .++|..|-..|.|.|+|++..+- ...+.+  ...+|..++.      .+-+.+++..+.+  +..|++..... .....
T Consensus       248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl  325 (463)
T KOG1645|consen  248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL  325 (463)
T ss_pred             cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc
Confidence            45788888889999999875432 112221  1234444432      2233344444443  45666543221 11112


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCC------------------CeEEEEeCCCCC----------------CCC-CCeE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEAD------------------KTVKLYKEDDSA----------------TEE-SHPV  345 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d------------------~~i~~~~~~~~~----------------~~~-~~~l  345 (479)
                      ..+..+.+.++.+.+..+.++.....                  |. .+|..+...                .++ ...+
T Consensus       326 ele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~-pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv  404 (463)
T KOG1645|consen  326 ELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF-PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIV  404 (463)
T ss_pred             ccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc-eeeeecccccCCcccccccccceeccccccEEE
Confidence            23445566677776654444333221                  11 111111000                011 2234


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC--CCcEEEEEcCCcEEEEeC
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP--TLYMFASASPDNIKQWKC  400 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~--~~~~l~s~s~d~i~~w~~  400 (479)
                      ..|...+++.+||..+.+.+.++.- ..+|..++...  .+.+|+.-.++.+.++..
T Consensus       405 ~~gd~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~  460 (463)
T KOG1645|consen  405 VVGDSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLTDDRVHIYKN  460 (463)
T ss_pred             EecCCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhheecceEEEEec
Confidence            4566778899999999999988853 36777766543  245777777887777654

>KOG1920|consensus

Probab=97.82  E-value=0.0053  Score=64.76  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=116.9

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE----CCCCCc
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD----LEYNKA  295 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd----~~~~~~  295 (479)
                      +.|.++.|..+++.+..+..+|.|.+-|..+.... ....-.+.|.+++|+||...++-...++++.+-+    +-..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            57899999999999999999999999888776432 2222356899999999999988877777776532    111111


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEE-------------EEeCCCeEEEEeCCC--CCCCCCCeEEE----EeCC-CcEE
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLI-------------TTEADKTVKLYKEDD--SATEESHPVIT----GSHD-CTIR  355 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~-------------~~~~d~~i~~~~~~~--~~~~~~~~l~s----gs~d-~~v~  355 (479)
                      ...  .....+....+-|....+.+-             .....+.+.+-+-+.  ....++.++++    ...+ +.|+
T Consensus       148 L~~--d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  148 LDA--DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             ccc--ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            100  000011111111111000000             000000000000000  00012223332    1223 7899


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc----CCcEEEEeCCC---CeEEeeecCCcceEEEEEEcCCC-EE
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS----PDNIKQWKCPE---GKFIQNLPGHNAIINSICVNNEG-VL  427 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s----~d~i~~w~~~~---~~~~~~~~~h~~~v~~l~~~~~~-~l  427 (479)
                      +||-+ +..-.+-....+.=.+++|-|.|.++++-.    ++.|.++..+-   |+..-.++--...|..++++.++ .|
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence            99876 322222111223335789999998888754    33488887532   22222222233448999999888 66


Q ss_pred             EE---EeCCCcEEEEecCC
Q psy8895         428 VS---GADNGTMCFWDWRT  443 (479)
Q Consensus       428 ~s---g~~dg~i~lWd~~~  443 (479)
                      +.   ......|++|-..+
T Consensus       305 Av~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             eeeecccccceEEEEEecC
Confidence            55   45555599998764

>KOG2315|consensus

Probab=97.81  E-value=0.00068  Score=65.26  Aligned_cols=116  Identities=18%  Similarity=0.332  Sum_probs=85.3

Q ss_pred             CccEEEEEEcCCCcEEEE--EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---CcEEEEECCCC
Q psy8895         219 LGWVRCVAVEPGNEWFAT--GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RTVKCWDLEYN  293 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~s--gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~i~~wd~~~~  293 (479)
                      .++|.++.|+|+|.-++.  |-+-..+-|+|++ +..+..+  -.++-+++-|+|.|++++.+|-+   |.|.+||..+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            689999999999976544  4456789999985 4444444  35677899999999999988765   79999999875


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      +.+....    -....-..|+|+|.++++++-.-.+++                   |+.++||+..
T Consensus       347 K~i~~~~----a~~tt~~eW~PdGe~flTATTaPRlrv-------------------dNg~Kiwhyt  390 (566)
T KOG2315|consen  347 KLIAKFK----AANTTVFEWSPDGEYFLTATTAPRLRV-------------------DNGIKIWHYT  390 (566)
T ss_pred             hhccccc----cCCceEEEEcCCCcEEEEEeccccEEe-------------------cCCeEEEEec
Confidence            5543321    122345789999999998876554443                   6678888875

>KOG4714|consensus

Probab=97.77  E-value=0.00025  Score=61.70  Aligned_cols=162  Identities=18%  Similarity=0.264  Sum_probs=87.9

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EEEEec-CCcCEEEEEEcCCCCEEEEEEC-----CCcEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KLSLTG-HVGSVRGLTVSPRHPYLFSCGD-----DRTVK  286 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~-h~~~v~~v~~~~~~~~l~s~~~-----d~~i~  286 (479)
                      .+.-|.++-.+-+.+--+..++++..||.+-+.+.+.-.. ...+.. |.+. -+.+.-..+.++.+++.     -+..+
T Consensus        84 ~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~  162 (319)
T KOG4714|consen   84 VLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFY  162 (319)
T ss_pred             eeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeecccee
Confidence            3444555544444455577899999999999998765211 111111 1111 11122223444444321     12344


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe-eE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK-SL  365 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~-~~  365 (479)
                      .|+++..+. .... ......+.++.-+|..                        .+.+++|+.||.+.+||.+... +.
T Consensus       163 a~~~~p~~t-~~~~-~~~~~~v~~l~~hp~q------------------------q~~v~cgt~dg~~~l~d~rn~~~p~  216 (319)
T KOG4714|consen  163 ANTLDPIKT-LIPS-KKALDAVTALCSHPAQ------------------------QHLVCCGTDDGIVGLWDARNVAMPV  216 (319)
T ss_pred             eeccccccc-cccc-ccccccchhhhCCccc------------------------ccEEEEecCCCeEEEEEcccccchH
Confidence            555432111 0000 0111123333333332                        3456788888899999988653 34


Q ss_pred             EEEccCCCceEEEEEeCC-C-cEEEEEcCCcEEEEeCCC
Q psy8895         366 CTLTNHKKSVRSVALHPT-L-YMFASASPDNIKQWKCPE  402 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~-~-~~l~s~s~d~i~~w~~~~  402 (479)
                      ..++.|+..++.+-|+|. . ++|.++.++.+..||..+
T Consensus       217 S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  217 SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             HHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            457789999999999995 3 455555555699999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.75  E-value=0.0031  Score=56.94  Aligned_cols=173  Identities=16%  Similarity=0.137  Sum_probs=102.6

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC-CCCC-CCCCC
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-PGSM-DSESG  307 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~-~~~~~  307 (479)
                      ++..++.++.++.+..||..+|+.+..+... ..+..... .++..++.+..|+.+..+|.++++.... .... +....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-ecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            4667777789999999999999998877642 22111111 1334566667888999999888776543 1111 11111


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------C-----------------CCCeEEEEeCCCc-EEEEECC
Q psy8895         308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------E-----------------ESHPVITGSHDCT-IRLWDLA  360 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------~-----------------~~~~l~sgs~d~~-v~iwd~~  360 (479)
                      .........+..++.+..++.+..++..+...         .                 ....+..++.++. +.+ |+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~  191 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLA  191 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETT
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECC
Confidence            11122222366777777777777777553211         0                 1124666777775 555 999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEe
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQ  407 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~  407 (479)
                      +++.+....  ...+..+....++.+++...++.+..||..+|+.+-
T Consensus       192 tg~~~w~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  192 TGEKLWSKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             TTEEEEEEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             CCCEEEEec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            998775433  233333223334455555556679999999998753

...

>KOG2314|consensus

Probab=97.75  E-value=0.0019  Score=62.24  Aligned_cols=157  Identities=15%  Similarity=0.208  Sum_probs=99.9

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-----------CCcEEEEECC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-----------DRTVKCWDLE  291 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-----------d~~i~~wd~~  291 (479)
                      +-+.|||.|.||+|--.-| |.+|.-.+-..++.|. |. .|.-+.|||..++|+|-|.           ...|.+||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            4588999999999988776 6799877765555554 54 5889999999999998542           2589999999


Q ss_pred             CCCcccCCCCCCC-CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         292 YNKAPVQPGSMDS-ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       292 ~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      ++........... .....-..|+.++++++.-.. ..                         |.|++..+..++-.-.-
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~s-------------------------isIyEtpsf~lld~Ksl  344 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NS-------------------------ISIYETPSFMLLDKKSL  344 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ce-------------------------EEEEecCceeeeccccc
Confidence            8876543322111 222334677888887764333 23                         44444333211111001


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCeEEee
Q psy8895         371 HKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGKFIQN  408 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~~~~~  408 (479)
                      .-..|+...|+|.+.+||--...      .+.+..+++++.+++
T Consensus       345 ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  345 KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT  388 (698)
T ss_pred             CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence            12457788888888888765532      256667766665544

>KOG1832|consensus

Probab=97.73  E-value=4.9e-05  Score=76.60  Aligned_cols=56  Identities=11%  Similarity=0.229  Sum_probs=49.9

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV   81 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~   81 (479)
                      .++|+.|+...+|++|+.+.++|+.|+..|.|+++++.+|........|.+.++-+
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~v 1149 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLV 1149 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccc
Confidence            45678999999999999999999999999999999999999888888888766544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=97.68  E-value=0.015  Score=57.30  Aligned_cols=155  Identities=15%  Similarity=0.033  Sum_probs=93.4

Q ss_pred             CEEEEEEcCCCCE-EEEEEC---CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         263 SVRGLTVSPRHPY-LFSCGD---DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       263 ~v~~v~~~~~~~~-l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      .+..-.|+|||+. ++..+.   +..|.++|+.+++.....   ...+......|+|+++.++.....            
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~------------  253 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAP------------  253 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEcc------------
Confidence            6678899999985 554333   357888898766543221   123334567789999877643321            


Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcc
Q psy8895         339 TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~  414 (479)
                                ..+..|.++|+.+++. ..+..+........|+||+..++-.++.    .|.+.+..+++....... ..
T Consensus       254 ----------~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~  321 (419)
T PRK04043        254 ----------KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK  321 (419)
T ss_pred             ----------CCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence                      1134677778776653 3444343333456799999766555543    478888887766433221 11


Q ss_pred             eEEEEEEcCCC-EEEEEeCC---------CcEEEEecCCCeE
Q psy8895         415 IINSICVNNEG-VLVSGADN---------GTMCFWDWRTGYN  446 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~d---------g~i~lWd~~~~~~  446 (479)
                      .  ...++||| .|+-.+..         ..|.+.|+.+|+.
T Consensus       322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~  361 (419)
T PRK04043        322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI  361 (419)
T ss_pred             c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence            1  23789998 55544332         3677888888754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.68  E-value=0.03  Score=50.87  Aligned_cols=179  Identities=14%  Similarity=0.169  Sum_probs=100.7

Q ss_pred             EEEEEEc-CCCcEEEEEeCCCeEEEEECCCCceEEEEec-----CCcCEEEEEEcCCCCEEEEEECC--------CcEEE
Q psy8895         222 VRCVAVE-PGNEWFATGSADKIIKVWDLATGKLKLSLTG-----HVGSVRGLTVSPRHPYLFSCGDD--------RTVKC  287 (479)
Q Consensus       222 v~~~~~~-~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~l~s~~~d--------~~i~~  287 (479)
                      ...+++. +++.++++ ..++ +.++|..+++.......     .....+.+++.++|.+.++....        +.+..
T Consensus        42 ~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLYVA-DSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEEEE-ETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEEEE-EcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            4566676 66655555 4444 45559998865443332     23467899999999977776533        44666


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT-TEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC  366 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~  366 (479)
                      ++.. .+.....   ..-.....++|+|+++.+.. -+..+.|..++.+.....             +.     ..+.+.
T Consensus       120 ~~~~-~~~~~~~---~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~-------------~~-----~~~~~~  177 (246)
T PF08450_consen  120 IDPD-GKVTVVA---DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE-------------LS-----NRRVFI  177 (246)
T ss_dssp             EETT-SEEEEEE---EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC-------------EE-----EEEEEE
T ss_pred             ECCC-CeEEEEe---cCcccccceEECCcchheeecccccceeEEEeccccccc-------------ee-----eeeeEE
Confidence            6665 2211110   11233567888998886653 344444444443211100             00     001122


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEc-CCcEEEEeCCCCeEEeeecCCcceEEEEEEc-CCC
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPGHNAIINSICVN-NEG  425 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-~~~  425 (479)
                      .+....+..-.+++++++.++++.. .+.|.+++.. |+++..+.-....+++++|. ++.
T Consensus       178 ~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~  237 (246)
T PF08450_consen  178 DFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG  237 (246)
T ss_dssp             E-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred             EcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence            2322223467899999999888765 4469999976 88877766554578899984 443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.67  E-value=0.011  Score=56.75  Aligned_cols=204  Identities=15%  Similarity=0.179  Sum_probs=125.4

Q ss_pred             ccEEEEEEcCCCcEEEEEeCC---------------CeEEEEECCCCceEEEEecCCcC--EE-EEEEcCCCCEEEEEEC
Q psy8895         220 GWVRCVAVEPGNEWFATGSAD---------------KIIKVWDLATGKLKLSLTGHVGS--VR-GLTVSPRHPYLFSCGD  281 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d---------------~~i~iWd~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~l~s~~~  281 (479)
                      ..|..+.|+|.+++|.+=+.-               +.+.+||+.+|..+..+.+...+  .+ -+.|+-+..+++-. -
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            457888999999999987643               35999999999999888877665  55 67888877766544 2


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      ...++++++......... ..-...++....++|.+..       ..+-.|-.+.           +..++++++|.+..
T Consensus       151 ~~sl~i~e~t~n~~~~p~-~~lr~~gi~dFsisP~~n~-------~~la~~tPEk-----------~~kpa~~~i~sIp~  211 (561)
T COG5354         151 GSSLYIHEITDNIEEHPF-KNLRPVGILDFSISPEGNH-------DELAYWTPEK-----------LNKPAMVRILSIPK  211 (561)
T ss_pred             cCeEEEEecCCccccCch-hhccccceeeEEecCCCCC-------ceEEEEcccc-----------CCCCcEEEEEEccC
Confidence            346899997322211111 1111245677777776422       1244554432           34567788888876


Q ss_pred             CeeEEEEccCCCceEEEEEeCCCcEEEEE------c------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC---E
Q psy8895         362 GKSLCTLTNHKKSVRSVALHPTLYMFASA------S------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG---V  426 (479)
Q Consensus       362 ~~~~~~~~~h~~~v~~i~~~~~~~~l~s~------s------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~---~  426 (479)
                      ++.+.+-.-..-.=..+.|.+.+.++..-      +      ..++.+.++....+ .....-.++|..+++.|.+   -
T Consensus       212 ~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p~S~~F~  290 (561)
T COG5354         212 NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEPLSSRFA  290 (561)
T ss_pred             CCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecccCCcee
Confidence            66554321111112345666665544221      1      12355555542222 2222557889999998876   3


Q ss_pred             EEEEeCCCcEEEEecCCC
Q psy8895         427 LVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~  444 (479)
                      +++|-.+..+-++|++.+
T Consensus       291 vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         291 VISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EEecccccceeecccccc
Confidence            566778999999999876

>KOG1275|consensus

Probab=97.66  E-value=0.00087  Score=68.23  Aligned_cols=149  Identities=17%  Similarity=0.237  Sum_probs=95.4

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC---------CCcEEEEECCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD---------DRTVKCWDLEY  292 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---------d~~i~~wd~~~  292 (479)
                      |.-++  .+++++.+|...|+|.+-|.++.+.+.++.+|++.|.++..  .|..|++||.         |..|++||++.
T Consensus       180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhh
Confidence            44444  45789999999999999999999999999999999986555  6778999873         67899999986


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC-eeEEEEcc
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG-KSLCTLTN  370 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~-~~~~~~~~  370 (479)
                      .+.....   +-.....-+.|.|.- ..+++++..|...+.|...                      +... ..+.-+..
T Consensus       256 mral~PI---~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~----------------------lsNP~~~~~~v~p  310 (1118)
T KOG1275|consen  256 MRALSPI---QFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT----------------------LSNPPAGVKMVNP  310 (1118)
T ss_pred             hhccCCc---ccccCchhhhhcccccceEEEEecccceeeccccc----------------------cCCCccceeEEcc
Confidence            5543221   111111234455532 3444444444443333111                      1110 00111111


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCC-cEEEEe
Q psy8895         371 HKKSVRSVALHPTLYMFASASPD-NIKQWK  399 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~  399 (479)
                      -...+.++++++.+..++-+..+ .|.+|.
T Consensus       311 ~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  311 NGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CCCcceeEEecCCCceEEEecccCcEeeec
Confidence            23458999999999998888765 599996

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.58  E-value=0.065  Score=49.90  Aligned_cols=222  Identities=15%  Similarity=0.173  Sum_probs=129.4

Q ss_pred             EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecCC-------cCEEEEEEcCCCCEEEEE--ECCCc
Q psy8895         224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGHV-------GSVRGLTVSPRHPYLFSC--GDDRT  284 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~--~~d~~  284 (479)
                      .+.++|+++.+++++          ..-.|.+||..+-.....+.-..       ......+++.|+++++..  +---+
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            356789999888755          24469999999987766443111       122345778888877654  44557


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------------CC
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------------EE  341 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------------~~  341 (479)
                      |.+-|++..+...+.   +..+  +...|......+.+.|.||++....++....                       ..
T Consensus       120 VtVVDl~~~kvv~ei---~~PG--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  120 VTVVDLAAKKVVGEI---DTPG--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEETTTTEEEEEE---EGTS--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             EEEEECCCCceeeee---cCCC--EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            888888765543221   1111  1223333335677788888877776653211                       01


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeE--EEEccC----------CCceEEEEEeCCC-cEEEEEc---C----C---cEEEE
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSL--CTLTNH----------KKSVRSVALHPTL-YMFASAS---P----D---NIKQW  398 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~--~~~~~h----------~~~v~~i~~~~~~-~~l~s~s---~----d---~i~~w  398 (479)
                      ...++--+.+|.|+--|+......  ..+.--          .+.-.-+++++.. .+++.-.   .    +   .|-++
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            123445678888888888765421  222110          1123457787654 4443321   1    1   26667


Q ss_pred             eCCCCeEEeeecCCcceEEEEEEcCCC--EEEEE-eCCCcEEEEecCCCeEEEEEE
Q psy8895         399 KCPEGKFIQNLPGHNAIINSICVNNEG--VLVSG-ADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       399 ~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg-~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      |..+++++.+++-. ..+.++.++.+.  .|++. ..++.+.+||..||+.++++.
T Consensus       275 D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  275 DLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             ETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             ECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            89999998887642 346688888655  66554 468999999999998877654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1275|consensus

Probab=97.55  E-value=0.0025  Score=65.10  Aligned_cols=188  Identities=17%  Similarity=0.192  Sum_probs=121.0

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF  309 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~  309 (479)
                      ++..++-|+-...+...|+++.+......-..+.|.-+..  +++++.+|...|+|-+-|+++.+......  .+.+.+.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~--aHs~siS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD--AHSGSIS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee--cccccee
Confidence            4566777777777888899888776555444444555544  56789999999999999998766544332  2344453


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC--cEE
Q psy8895         310 SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL--YMF  387 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--~~l  387 (479)
                        .|+-.|+.+++++........                ..|..|++||++.-+.+.-+.-+.++ .-+.|+|..  .+.
T Consensus       222 --DfDv~GNlLitCG~S~R~~~l----------------~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~  282 (1118)
T KOG1275|consen  222 --DFDVQGNLLITCGYSMRRYNL----------------AMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLA  282 (1118)
T ss_pred             --eeeccCCeEEEeecccccccc----------------cccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEE
Confidence              446678888888765543211                23778999999987766555444433 445667753  344


Q ss_pred             EEEcCCcEEEEeC---CCCe-EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         388 ASASPDNIKQWKC---PEGK-FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       388 ~s~s~d~i~~w~~---~~~~-~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ++.+.+...+-|.   .+.. .++....-...+..+++++++ .++-|..+|.|.+|-
T Consensus       283 V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  283 VTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            4444444444441   1110 112222223448899999998 899999999999998

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.53  E-value=0.02  Score=57.81  Aligned_cols=104  Identities=14%  Similarity=0.232  Sum_probs=64.0

Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEE------------------cCCcEEEEeCCCCeE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA------------------SPDNIKQWKCPEGKF  405 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~------------------s~d~i~~w~~~~~~~  405 (479)
                      .++.++.+|.+...|.++++.+......   ...++.+| +.+++.+                  ..+.+.-.|..+|+.
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~  378 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV  378 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence            4677888999999999999998875421   11123333 2222221                  123466667777766


Q ss_pred             EeeecCC--c------ceE--EEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         406 IQNLPGH--N------AII--NSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       406 ~~~~~~h--~------~~v--~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      +-+....  .      ...  ..+.. .++.|+.++.||.+..+|.+||+.+-+.++
T Consensus       379 ~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         379 VWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             eeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            5433221  1      111  11122 345788888999999999999998877665

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.52  E-value=0.028  Score=54.50  Aligned_cols=226  Identities=19%  Similarity=0.169  Sum_probs=113.7

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-------------------------------------------eEEEE
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGK-------------------------------------------LKLSL  257 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-------------------------------------------~~~~~  257 (479)
                      .|..++|.++..-|+.|-..|.|-||.....+                                           ....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            47888999888888888889998888542110                                           01123


Q ss_pred             ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC------CCCCCCCCeEEEEEe-----CCC---CEEEEE
Q psy8895         258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP------GSMDSESGIFSMTFD-----NSG---SRLITT  323 (479)
Q Consensus       258 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~~~i~~~~~~-----~~~---~~l~~~  323 (479)
                      ....++|.+++.|.-| +++.|.++|.+.+.|++....+...      ........+.++.|.     .++   -.+++|
T Consensus        83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG  161 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG  161 (395)
T ss_dssp             ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred             eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence            3456899999998544 8999999999999999765543221      111123345555554     122   356677


Q ss_pred             eCCCeEEEEeCCCCCCC-CCCeEEEE--eCCCc---EEEEECCCCeeEE-EE---ccCCCceEEEEEeCCCcEEEEEcCC
Q psy8895         324 EADKTVKLYKEDDSATE-ESHPVITG--SHDCT---IRLWDLAAGKSLC-TL---TNHKKSVRSVALHPTLYMFASASPD  393 (479)
Q Consensus       324 ~~d~~i~~~~~~~~~~~-~~~~l~sg--s~d~~---v~iwd~~~~~~~~-~~---~~h~~~v~~i~~~~~~~~l~s~s~d  393 (479)
                      +..|.+.+|++...... ..-.++..  ..++.   |...|..+++.-. +.   .+-...+      +...+++.+++.
T Consensus       162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~------~i~g~vVvvSe~  235 (395)
T PF08596_consen  162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI------SIPGYVVVVSES  235 (395)
T ss_dssp             ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----------EEEEEE-SS
T ss_pred             eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC------CcCcEEEEEccc
Confidence            77777777765311000 00001100  11111   1222323222111 10   0000000      012366777788


Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEc-----CCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVN-----NEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-----~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .++++...+.+..+......-.+..+++-     ..+ .|++-..||.|+++.+..=+.+..++..
T Consensus       236 ~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~  301 (395)
T PF08596_consen  236 DIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP  301 (395)
T ss_dssp             EEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred             ceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence            89999998888766554433344444442     234 7888889999999999976666666553

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>smart00320 WD40 WD40 repeats

Probab=97.46  E-value=0.00041  Score=41.64  Aligned_cols=37  Identities=41%  Similarity=0.761  Sum_probs=32.8

Q ss_pred             eEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEE
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD  247 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd  247 (479)
                      ....+..|...|.++.+.++++++++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3456678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2314|consensus

Probab=97.41  E-value=0.0045  Score=59.77  Aligned_cols=143  Identities=13%  Similarity=0.144  Sum_probs=94.7

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      -+-+.|||.|.+|+|-..-| |.+|--++-......   . ...+--+.|+|..++|++-+..-...=|+-         
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF---~-Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d---------  278 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF---Y-HPGVQFIDFSPNEKYLVTYSPEPIIVEEDD---------  278 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc---c-CCCceeeecCCccceEEEecCCccccCccc---------
Confidence            46789999999999987655 789965543322222   1 124667899999999998776543332221         


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEccC--CCceE-EEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTNH--KKSVR-SVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~~~v~-~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                           .....++|||+.+|...+++...  ...++ -+.||.|.+++|--..+.|.+++..+-.++..-.-.-..|....
T Consensus       279 -----~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~Fs  353 (698)
T KOG2314|consen  279 -----NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFS  353 (698)
T ss_pred             -----CCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcc
Confidence                 12246899999999888877652  22333 35789999999999889999999876544322111223355556


Q ss_pred             EcCCC
Q psy8895         421 VNNEG  425 (479)
Q Consensus       421 ~~~~~  425 (479)
                      ++|.+
T Consensus       354 wsP~~  358 (698)
T KOG2314|consen  354 WSPTS  358 (698)
T ss_pred             cCCCc
Confidence            66665

>KOG2114|consensus

Probab=97.26  E-value=0.027  Score=57.59  Aligned_cols=175  Identities=15%  Similarity=0.200  Sum_probs=111.5

Q ss_pred             ecCCCcc-EEEEEEcCCCcEEEEEeCCC-----eEEEEECCCC------ceEE--EEecC-----CcCEEEEEEcCCCCE
Q psy8895         215 ISGHLGW-VRCVAVEPGNEWFATGSADK-----IIKVWDLATG------KLKL--SLTGH-----VGSVRGLTVSPRHPY  275 (479)
Q Consensus       215 ~~~h~~~-v~~~~~~~~g~~l~sgs~d~-----~i~iWd~~~~------~~~~--~~~~h-----~~~v~~v~~~~~~~~  275 (479)
                      +..|... |..+-...+.++|++.+.|+     .++||+++.-      .+..  .+.+|     ..++.+++++.+-..
T Consensus        60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~  139 (933)
T KOG2114|consen   60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT  139 (933)
T ss_pred             heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence            4444444 55555555557888888775     4899998532      2331  22222     357889999999888


Q ss_pred             EEEEECCCcEEEEECC--CCCcccCCCCCCCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC
Q psy8895         276 LFSCGDDRTVKCWDLE--YNKAPVQPGSMDSESGIFSMTFDNSGSRL-ITTEADKTVKLYKEDDSATEESHPVITGSHDC  352 (479)
Q Consensus       276 l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~  352 (479)
                      ++.|-.+|.|..+.-.  ..+.....-......+|+.+.+..+++.+ .++                       |   -.
T Consensus       140 Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~-----------------------T---t~  193 (933)
T KOG2114|consen  140 IVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA-----------------------T---TE  193 (933)
T ss_pred             EEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE-----------------------e---cc
Confidence            8889899999988432  11111111112345667777777666542 111                       1   12


Q ss_pred             cEEEEECCCCee-EEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec-CCcce
Q psy8895         353 TIRLWDLAAGKS-LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP-GHNAI  415 (479)
Q Consensus       353 ~v~iwd~~~~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~-~h~~~  415 (479)
                      .|.+|.+....+ +..+..|..++++-.+++..+.|..++...+.+|+.+...+-..+. ||+-.
T Consensus       194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~  258 (933)
T KOG2114|consen  194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAFEVGEKKE  258 (933)
T ss_pred             eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeeecCCCeEE
Confidence            466666663332 4456678888999999988887888888889999987666666666 66543

>KOG4649|consensus

Probab=97.26  E-value=0.11  Score=45.75  Aligned_cols=66  Identities=9%  Similarity=0.038  Sum_probs=51.7

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR-GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      |++++.|+..|.+.+-+.++|...+.+.... .|. .....+++..+..++.|+..+..|+++..+..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy  129 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY  129 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence            7789999999999999999998877766443 232 23456788899999999999999987665543

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.16  E-value=0.17  Score=45.57  Aligned_cols=208  Identities=15%  Similarity=0.238  Sum_probs=105.8

Q ss_pred             EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecC-CcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGH-VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      .+.+-...+..++++|+.+ +++.....+.|.-.+. +|+.+..+.-. .+-.-.+++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            4556666799999999865 5555666777777776 47766654322 2456788888888777766568899999884


Q ss_pred             CCCcc--------cCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q psy8895         292 YNKAP--------VQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       292 ~~~~~--------~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~  362 (479)
                      .....        .... ....+.++..++|++.++.++.+.......+|......           .+..+.+.+... 
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----------~~~~~~~~~~~~-  162 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----------GGFDLFVSDDQD-  162 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------------SS--EEEE-HH-
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----------Cccceeeccccc-
Confidence            32211        0111 11244568889999988888777665555555432211           011111111110 


Q ss_pred             eeEEEEccCCCceEEEEEeCC-CcEEEEEcCCc-EEEEeCCCCeEEeeec--C-Cc------ceEEEEEEcCCCEEEEEe
Q psy8895         363 KSLCTLTNHKKSVRSVALHPT-LYMFASASPDN-IKQWKCPEGKFIQNLP--G-HN------AIINSICVNNEGVLVSGA  431 (479)
Q Consensus       363 ~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~d~-i~~w~~~~~~~~~~~~--~-h~------~~v~~l~~~~~~~l~sg~  431 (479)
                        +......-..+.+++++|. +.+++-+.... +...| .+|+.+..+.  . ..      ..-..++|.++|.|...+
T Consensus       163 --~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  163 --LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             --HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             --cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence              0001112335788999996 45555555554 77788 6777665442  2 11      246788999999666666


Q ss_pred             CCCcEE
Q psy8895         432 DNGTMC  437 (479)
Q Consensus       432 ~dg~i~  437 (479)
                      +-....
T Consensus       240 EpNlfy  245 (248)
T PF06977_consen  240 EPNLFY  245 (248)
T ss_dssp             TTTEEE
T ss_pred             CCceEE
Confidence            655433

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621|consensus

Probab=97.01  E-value=0.018  Score=57.52  Aligned_cols=117  Identities=17%  Similarity=0.264  Sum_probs=84.9

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc-
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV-  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-  297 (479)
                      ..|.--+++..+++++.|+.-|.+.+++-..+.... ...+-.+.+....++++..+++.|+..|.|.++-+....... 
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~  113 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL  113 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence            334434455678999999999999999977665432 333344566677888888888888999999999886543321 


Q ss_pred             ---CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy8895         298 ---QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       298 ---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  336 (479)
                         ......+...|.++.|++++..+.+|...|+|.+-.++.
T Consensus       114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               111222467899999999999999999999887766554

>KOG4640|consensus

Probab=97.01  E-value=0.0051  Score=60.49  Aligned_cols=92  Identities=17%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR-GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~-~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      .+.-+-|+|.-.+||.+..+|.+.+..+. .+.++++.-|...++ +++|.|||+.++.|-.||+|++-|++++......
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~  100 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF  100 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence            46778899999999999999999999988 677788887777776 9999999999999999999999999877654332


Q ss_pred             CCCCCCCCeEEEEEe
Q psy8895         300 GSMDSESGIFSMTFD  314 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~  314 (479)
                       ....+..|.++.|+
T Consensus       101 -~~s~e~~is~~~w~  114 (665)
T KOG4640|consen  101 -LFSVETDISKGIWD  114 (665)
T ss_pred             -ccccccchheeecc
Confidence             12233455566655

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.96  E-value=0.0076  Score=59.02  Aligned_cols=90  Identities=11%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             EEEEECCCCceEE---EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCE
Q psy8895         243 IKVWDLATGKLKL---SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSR  319 (479)
Q Consensus       243 i~iWd~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (479)
                      -.+|+....+...   +--.....+.+++++|+...++.|..||+|.+||...+.....    ...-....++|+|+|..
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~----ka~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA----KAEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee----eecccceEEEEcCCCcE
Confidence            3467765553321   1224667899999999999999999999999999865422211    12234568999999999


Q ss_pred             EEEEeCCCeEEEEeCCC
Q psy8895         320 LITTEADKTVKLYKEDD  336 (479)
Q Consensus       320 l~~~~~d~~i~~~~~~~  336 (479)
                      +++++..|.+.+||..-
T Consensus       314 ~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEEEcCCceEEEEEeec
Confidence            99999999999998643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.75  E-value=0.1  Score=51.49  Aligned_cols=130  Identities=17%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy8895         260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT  339 (479)
Q Consensus       260 h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  339 (479)
                      ..-....+.++|++++++.+ .||.-.++.....+..       ..+......|.+. ..+++-....+|.+++.-....
T Consensus        31 ~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k-------~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~  101 (443)
T PF04053_consen   31 CEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNK-------AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEV  101 (443)
T ss_dssp             -SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEE-------EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-T
T ss_pred             CCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccc-------ccCceeEEEEecC-ccEEEEECCCeEEEEEcCcccc
Confidence            34456889999999998875 5666777763211110       1122345677774 4466666688899964321111


Q ss_pred             ------C-------CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCC
Q psy8895         340 ------E-------ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCP  401 (479)
Q Consensus       340 ------~-------~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~  401 (479)
                            +       .+..|...+ ++.|.+||..+++.+.++.-.  +|..+.|++++.+++-.+.+.+.+.+..
T Consensus       102 ~k~i~~~~~~~~If~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~  173 (443)
T PF04053_consen  102 VKSIKLPFSVEKIFGGNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYN  173 (443)
T ss_dssp             T-----SS-EEEEE-SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred             ceEEcCCcccceEEcCcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence                  1       123344444 448999999999999998643  4899999999999999999988877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.57  E-value=0.088  Score=55.08  Aligned_cols=136  Identities=15%  Similarity=0.127  Sum_probs=84.5

Q ss_pred             CCCeEEEEECCCCceEEEEecCCcC-EEEEEEcC-----CCCEEEEEECCCcEEEEECCCCCc-ccCC-C-CCCCCCCeE
Q psy8895         239 ADKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSP-----RHPYLFSCGDDRTVKCWDLEYNKA-PVQP-G-SMDSESGIF  309 (479)
Q Consensus       239 ~d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~-----~~~~l~s~~~d~~i~~wd~~~~~~-~~~~-~-~~~~~~~i~  309 (479)
                      ....|.-.|+..|+.+..+..|... |..++-..     +....+.|-.++.+..||++-... .... . .........
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            4567888899999999999888754 55544321     122345677888999999874321 1100 0 000001111


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEE
Q psy8895         310 SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFAS  389 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  389 (479)
                      |+          +.+                ....++.||.+|.||+||-...+....+.+-..+|..|+.+.||+.+++
T Consensus       582 ~~----------aTt----------------~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila  635 (794)
T PF08553_consen  582 CF----------ATT----------------EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA  635 (794)
T ss_pred             EE----------Eec----------------CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence            11          111                2234688888899999984332323345666789999999999998888


Q ss_pred             EcCCcEEEEeC
Q psy8895         390 ASPDNIKQWKC  400 (479)
Q Consensus       390 ~s~d~i~~w~~  400 (479)
                      .....+.+.+.
T Consensus       636 Tc~tyLlLi~t  646 (794)
T PF08553_consen  636 TCKTYLLLIDT  646 (794)
T ss_pred             eecceEEEEEE
Confidence            88777666653

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3617|consensus

Probab=96.55  E-value=0.036  Score=56.56  Aligned_cols=139  Identities=11%  Similarity=0.146  Sum_probs=91.3

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC-
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG-  300 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-  300 (479)
                      +.+++|+|..-.|+.|=.-|.+-+|...+.+.-.....|..+|..+.||++|..++|+..=|.+.+|............ 
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            4568999988888999889999999988776666667899999999999999999999999999999765222111110 


Q ss_pred             -CCCCCC--CeEEEEEeCCCC------EEEEEeCCCeEE-EEeCC--CC-------CCCCCCeEEEEeCCCcEEEEECC
Q psy8895         301 -SMDSES--GIFSMTFDNSGS------RLITTEADKTVK-LYKED--DS-------ATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       301 -~~~~~~--~i~~~~~~~~~~------~l~~~~~d~~i~-~~~~~--~~-------~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                       ..+-..  ..+|...++++.      ..++++.+..+. .++.+  ..       ..+.+..++.+..+|+|+.-|-.
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCC
Confidence             011111  234445555421      233344444333 33322  11       12345567888889999887743

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.47  E-value=1  Score=44.44  Aligned_cols=201  Identities=17%  Similarity=0.198  Sum_probs=103.0

Q ss_pred             cEEEEEEcCCCcEEEEE-eCCC----eEEEEECCCCceEEE-EecCCcCEEEEEEcCCCCEEEEEECC-----------C
Q psy8895         221 WVRCVAVEPGNEWFATG-SADK----IIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRHPYLFSCGDD-----------R  283 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sg-s~d~----~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d-----------~  283 (479)
                      .+...+++|+|+++|-+ +..|    .+++.|+.+|+.+.. +....  -..+.|.+++..++....+           .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34467889999987643 4444    599999999976542 22211  1238999998877665433           2


Q ss_pred             cEEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC-CcEEEEECC
Q psy8895         284 TVKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD-CTIRLWDLA  360 (479)
Q Consensus       284 ~i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d-~~v~iwd~~  360 (479)
                      .|+.|++.+....  ..............+..++++++++..+..+                      .+ ..+.+.|+.
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~----------------------~~~s~v~~~d~~  260 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSG----------------------TSESEVYLLDLD  260 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESS----------------------SSEEEEEEEECC
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcc----------------------ccCCeEEEEecc
Confidence            4777887655432  1111111111255677777777765433221                      11 345555655


Q ss_pred             CC----eeEEEEccCCCce-EEEEEeCCCcEEEEEcCC----cEEEEeCCCCeE---EeeecCCcc--eEEEEEEcCCCE
Q psy8895         361 AG----KSLCTLTNHKKSV-RSVALHPTLYMFASASPD----NIKQWKCPEGKF---IQNLPGHNA--IINSICVNNEGV  426 (479)
Q Consensus       361 ~~----~~~~~~~~h~~~v-~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~---~~~~~~h~~--~v~~l~~~~~~~  426 (479)
                      .+    .....+......+ ..+... ...+++....+    .+...++.....   ...+..|..  .+..+....+.+
T Consensus       261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~L  339 (414)
T PF02897_consen  261 DGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYL  339 (414)
T ss_dssp             CTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEE
T ss_pred             ccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEE
Confidence            43    1222222222223 333333 33333333232    244556555442   224444443  566666666667


Q ss_pred             EEEEeCCCc--EEEEecCCCeE
Q psy8895         427 LVSGADNGT--MCFWDWRTGYN  446 (479)
Q Consensus       427 l~sg~~dg~--i~lWd~~~~~~  446 (479)
                      ++....++.  |+++++..+..
T Consensus       340 vl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  340 VLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEEEETTEEEEEEEETT-TEE
T ss_pred             EEEEEECCccEEEEEECCCCcE
Confidence            777666654  77888873333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2444|consensus

Probab=96.46  E-value=0.0084  Score=51.72  Aligned_cols=121  Identities=18%  Similarity=0.257  Sum_probs=68.9

Q ss_pred             EEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------
Q psy8895         276 LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------  338 (479)
Q Consensus       276 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------  338 (479)
                      +..-+.|+.++-++++..+...+.-.. .... ..+  -..+..+++|+.++.+.+|......                 
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~-~~e~-~~v--~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I  108 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERF-IDEG-QRV--VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI  108 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhh-hhcc-eee--cccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence            334577888888887644332111000 0111 111  1234678899999999998865211                 


Q ss_pred             --CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC-CceEEEEEeCCCcEEEEE--cCC-cEEEEeC
Q psy8895         339 --TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK-KSVRSVALHPTLYMFASA--SPD-NIKQWKC  400 (479)
Q Consensus       339 --~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~~v~~i~~~~~~~~l~s~--s~d-~i~~w~~  400 (479)
                        ...+....++.+|+.||.|++.-.+.+.....|. .++.....+.....++.+  |.+ .++.|++
T Consensus       109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence              1123367789999999999999888887776776 343333333333333333  322 2455554

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.43  E-value=0.0089  Score=38.13  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             ccceEEEEEccCCceEEEecCCCeEEEEeecccceE
Q psy8895          33 LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANV   68 (479)
Q Consensus        33 ~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~   68 (479)
                      ...|.+++|+|..++||.|..||.|.|+.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            457999999999999999999999999998 55543

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.41  E-value=0.13  Score=51.99  Aligned_cols=55  Identities=9%  Similarity=0.076  Sum_probs=32.9

Q ss_pred             EEEcCCCcEEEEEe-CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE
Q psy8895         225 VAVEPGNEWFATGS-ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG  280 (479)
Q Consensus       225 ~~~~~~g~~l~sgs-~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~  280 (479)
                      +-++|||+.+...+ ..+.+.+.|..+.+...++.--. .-..++++++++++++.+
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTs  253 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTC  253 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEec
Confidence            44567777654333 34667777887776655543222 235567778887776654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.40  E-value=0.79  Score=42.33  Aligned_cols=217  Identities=17%  Similarity=0.229  Sum_probs=112.7

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC--------
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG--------  300 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--------  300 (479)
                      ..++.|+.|..+| +.+++.........+. +..+|..+...++-..++.-+ |+.+.++++..-.......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            3578899999998 8888883332222222 233499999999877776654 5999999986433222100        


Q ss_pred             ----CCCCCCCeEEEE--EeCCCCEEEEEeCCCeEEEEeCCCCCCC-------------------CCCeEEEEeCCCcEE
Q psy8895         301 ----SMDSESGIFSMT--FDNSGSRLITTEADKTVKLYKEDDSATE-------------------ESHPVITGSHDCTIR  355 (479)
Q Consensus       301 ----~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~~~~~~~~~-------------------~~~~l~sgs~d~~v~  355 (479)
                          .......+...+  -...+...++....+++.+|........                   ....++.|.. ....
T Consensus        82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~-~~f~  160 (275)
T PF00780_consen   82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTS-KGFY  160 (275)
T ss_pred             cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeC-CceE
Confidence                111122233333  1223333333334448887765442110                   1223445543 4467


Q ss_pred             EEECCCCeeEEEEccC------------CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEe--eecCCcceEEEEEE
Q psy8895         356 LWDLAAGKSLCTLTNH------------KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQ--NLPGHNAIINSICV  421 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h------------~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~--~~~~h~~~v~~l~~  421 (479)
                      +.|+.++....-+...            ..++..+.++. +.+|.+ . +++-++=...|+..+  .+.... .+..+++
T Consensus       161 ~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~Ll~-~-~~~g~fv~~~G~~~r~~~i~W~~-~p~~~~~  236 (275)
T PF00780_consen  161 LIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSD-NEFLLC-Y-DNIGVFVNKNGEPSRKSTIQWSS-APQSVAY  236 (275)
T ss_pred             EEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCC-ceEEEE-e-cceEEEEcCCCCcCcccEEEcCC-chhEEEE
Confidence            7788866543322111            12333444433 333332 2 233333233444332  333322 3445555


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEeEe
Q psy8895         422 NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCV  455 (479)
Q Consensus       422 ~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~  455 (479)
                      .. .+|+.-.+ +.|.||++.+|+.+|.+....+
T Consensus       237 ~~-pyli~~~~-~~iEV~~~~~~~lvQ~i~~~~~  268 (275)
T PF00780_consen  237 SS-PYLIAFSS-NSIEVRSLETGELVQTIPLPNI  268 (275)
T ss_pred             EC-CEEEEECC-CEEEEEECcCCcEEEEEECCCE
Confidence            32 35555544 5699999999999888765543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.26  E-value=1  Score=46.38  Aligned_cols=192  Identities=14%  Similarity=0.113  Sum_probs=98.5

Q ss_pred             ccEEEEEEcCCCcEEEEEe------CCCeEEEEECC-CCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----------
Q psy8895         220 GWVRCVAVEPGNEWFATGS------ADKIIKVWDLA-TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----------  282 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs------~d~~i~iWd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----------  282 (479)
                      ..+...+++|+|+.++..-      .|..-.||-.. .+.......+.  ....-.|+|||..+.+.+..          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence            4677889999999877655      34444455332 22222222332  35667899998877766432          


Q ss_pred             --CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         283 --RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       283 --~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                        +.+.+.+++.+....     .....|..+.|+|+|.+++.... +.+.+--            +.-..+|..++=   
T Consensus       428 ~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~~-g~v~Va~------------Vvr~~~G~~~l~---  486 (591)
T PRK13616        428 ATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMIIG-GKVYLAV------------VEQTEDGQYALT---  486 (591)
T ss_pred             CCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEEC-CEEEEEE------------EEeCCCCceeec---
Confidence              222222332221110     22456899999999998876552 3333211            111233433331   


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCC-CCeEEeeecC--CcceEEEEEEcCCCEEEEEeCCCcEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCP-EGKFIQNLPG--HNAIINSICVNNEGVLVSGADNGTMC  437 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~-~~~~~~~~~~--h~~~v~~l~~~~~~~l~sg~~dg~i~  437 (479)
                        .+..-...-...+.++.|.+++.+++........+|.+. .|.....+.+  ....+.+++-+++ .++....+|.+.
T Consensus       487 --~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~-~iyv~~~~g~~~  563 (591)
T PRK13616        487 --NPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS-TVYVTDARAVLQ  563 (591)
T ss_pred             --ccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc-eEEEEcCCceEE
Confidence              111111122334678999999887765544333344331 1322222233  2455666766654 344445555444

>KOG1008|consensus

Probab=96.24  E-value=0.0024  Score=62.73  Aligned_cols=199  Identities=19%  Similarity=0.254  Sum_probs=115.5

Q ss_pred             ccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCC-CCEEEEEE----CCCcEEEEEC
Q psy8895         220 GWVRCVAVEP--GNEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPR-HPYLFSCG----DDRTVKCWDL  290 (479)
Q Consensus       220 ~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~-~~~l~s~~----~d~~i~~wd~  290 (479)
                      ..+.|++..-  +...++.|..+|.|-+-..+...-  .....+|....++++|++- ...|+.|-    .|..+++||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            3456666433  335688888999988877654322  2234567778999999884 44555552    4568999999


Q ss_pred             CCCCc-ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         291 EYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       291 ~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      .+.-. +..           ...|+. +    +.. +....-|+      .+...+++|...+.++++|++....... .
T Consensus       137 ~s~ltvPke-----------~~~fs~-~----~l~-gqns~cwl------rd~klvlaGm~sr~~~ifdlRqs~~~~~-s  192 (783)
T KOG1008|consen  137 NSLLTVPKE-----------SPLFSS-S----TLD-GQNSVCWL------RDTKLVLAGMTSRSVHIFDLRQSLDSVS-S  192 (783)
T ss_pred             ccccCCCcc-----------cccccc-c----ccc-Cccccccc------cCcchhhcccccchhhhhhhhhhhhhhh-h
Confidence            75411 100           111111 0    000 00011111      2345577888888899999884321111 1


Q ss_pred             cCCCceEEEEEeC-CCcEEEEEcCCcEEEEeC-CCC-eEEeeecC----CcceEEEEEEcCC--CEEEEEeC-CCcEEEE
Q psy8895         370 NHKKSVRSVALHP-TLYMFASASPDNIKQWKC-PEG-KFIQNLPG----HNAIINSICVNNE--GVLVSGAD-NGTMCFW  439 (479)
Q Consensus       370 ~h~~~v~~i~~~~-~~~~l~s~s~d~i~~w~~-~~~-~~~~~~~~----h~~~v~~l~~~~~--~~l~sg~~-dg~i~lW  439 (479)
                      -....+..+.++| ...++++-+++.+.+||. .+- ..+..+..    ....+..+++.|.  |.+++... .++|+++
T Consensus       193 vnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrly  272 (783)
T KOG1008|consen  193 VNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLY  272 (783)
T ss_pred             hhhhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEe
Confidence            1233566778888 678888888778999993 221 11222111    1234788888764  46776664 5789999


Q ss_pred             ecC
Q psy8895         440 DWR  442 (479)
Q Consensus       440 d~~  442 (479)
                      |+.
T Consensus       273 di~  275 (783)
T KOG1008|consen  273 DIC  275 (783)
T ss_pred             ccc
Confidence            976

>KOG4640|consensus

Probab=96.23  E-value=0.022  Score=56.23  Aligned_cols=76  Identities=16%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEE-EEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIIN-SICVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~-~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      ..|.-+.|+|...++|.+..++ +.+...+ .+++-+++-|...+. ++|+.||| .||.|-.||+|++-|+.+|..++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4578899999999999998875 7666655 566666665665565 99999999 889999999999999999988876

>KOG4649|consensus

Probab=96.22  E-value=0.81  Score=40.61  Aligned_cols=118  Identities=10%  Similarity=0.018  Sum_probs=74.3

Q ss_pred             CEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------  339 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------  339 (479)
                      .+++.||..+.+.--|..+++...+.   ....++.+-+.- -+++++.|+..+.+.+.+......              
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~---ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a   99 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEA---ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA   99 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeeh---hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence            35556677777777777665543221   112223222221 356788899888887766554311              


Q ss_pred             ---CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCCcE
Q psy8895         340 ---EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPDNI  395 (479)
Q Consensus       340 ---~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~i  395 (479)
                         .++..+..|++|++.+..|.++..+++..+-..+...+-++.| ++.++++...+.+
T Consensus       100 ~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen  100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             EEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence               2456789999999999999999999988765444334445566 5666666655543

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.38  Score=43.29  Aligned_cols=197  Identities=14%  Similarity=0.164  Sum_probs=100.5

Q ss_pred             EEcCCCcEEEEEeCC-----CeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE-----------
Q psy8895         226 AVEPGNEWFATGSAD-----KIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW-----------  288 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d-----~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w-----------  288 (479)
                      .|+|||.+|...-+|     |.|-|||.+.+ +.+.++.+|.-.-..+.+.+||+.++.+.  |-|..-           
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNld  197 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLD  197 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchh
Confidence            589999999887654     67999999865 44567777766667889999999887642  223222           


Q ss_pred             ---------ECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEE
Q psy8895         289 ---------DLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLW  357 (479)
Q Consensus       289 ---------d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iw  357 (479)
                               |-.+++.+.+  .......-.+..+...+++...+.+-..|         .......++.--...+.+...
T Consensus       198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G---------~~~d~ppLvg~~~~g~~l~~~  268 (366)
T COG3490         198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRG---------PRNDLPPLVGHFRKGEPLEFL  268 (366)
T ss_pred             hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeC---------CCccCCcceeeccCCCcCccc
Confidence                     2111111100  00001112334444444433332221111         011111112111222223333


Q ss_pred             ECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-c-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCc
Q psy8895         358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-N-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGT  435 (479)
Q Consensus       358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~  435 (479)
                      |+...+    .......|-+|+.+.+..+++..+.. + ..+||..+|..+..-.-  ..+..++...+++.+| +.+|.
T Consensus       269 ~~pee~----~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l--~daaGva~~~~gf~vs-sg~G~  341 (366)
T COG3490         269 DLPEEQ----TAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL--PDAAGVAAAKGGFAVS-SGQGR  341 (366)
T ss_pred             CCCHHH----HHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc--cccccceeccCceEEe-cCCce
Confidence            332110    01123467888888766666555544 4 78999999987653211  1122233344555554 45688


Q ss_pred             EEEEe
Q psy8895         436 MCFWD  440 (479)
Q Consensus       436 i~lWd  440 (479)
                      ++++.
T Consensus       342 ~~~~s  346 (366)
T COG3490         342 IIFYS  346 (366)
T ss_pred             EEecc
Confidence            88774

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=96.08  E-value=1.2  Score=45.16  Aligned_cols=205  Identities=18%  Similarity=0.170  Sum_probs=108.2

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCc------CE--EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVG------SV--RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~------~v--~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      +..++.++.++.+.-.|.++|+.+..+.....      .+  ..+++. ++..++.++.++.|.-+|.++++...+....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            44566777889999999999988877654322      01  111221 2246777788999999999887755332111


Q ss_pred             CCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC-------
Q psy8895         303 DSESGIFSMTFDN--SGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK-------  373 (479)
Q Consensus       303 ~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~-------  373 (479)
                      .....-..+.-.|  .+..++.++.+..                ...+..++.+..+|..+++.+...+....       
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~----------------~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~  203 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAE----------------FFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT  203 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccc----------------cccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC
Confidence            1100000000000  0011212111100                00113467788888888888776643111       


Q ss_pred             -------------ce-EEEEEeCC-CcEEEEEcCC------------------cEEEEeCCCCeEEeeec--CCcc----
Q psy8895         374 -------------SV-RSVALHPT-LYMFASASPD------------------NIKQWKCPEGKFIQNLP--GHNA----  414 (479)
Q Consensus       374 -------------~v-~~i~~~~~-~~~l~s~s~d------------------~i~~w~~~~~~~~~~~~--~h~~----  414 (479)
                                   .+ .+.++++. +..++..++.                  .+.-.|..+|+.+-..+  .|..    
T Consensus       204 ~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~  283 (488)
T cd00216         204 WGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYD  283 (488)
T ss_pred             CCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccc
Confidence                         01 12344443 3344443332                  47778888898865432  1211    


Q ss_pred             -----eEEEEE-EcCC--CEEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         415 -----IINSIC-VNNE--GVLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       415 -----~v~~l~-~~~~--~~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                           .+..+. ...+  ..++.++.+|.+...|.++|+.+=+.+.
T Consensus       284 ~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~  329 (488)
T cd00216         284 GPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPE  329 (488)
T ss_pred             cCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEe
Confidence                 011110 1111  1577888999999999999988755443

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.07  E-value=2  Score=43.78  Aligned_cols=58  Identities=14%  Similarity=0.267  Sum_probs=37.0

Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      +.-+|..+|+.+-..+.............++.++.++.||.++.+|.+||+.+-+.++
T Consensus       443 l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       443 LIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             EEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            5567777777655443221111122223445677788899999999999999866555

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2395|consensus

Probab=96.03  E-value=0.14  Score=49.78  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=87.5

Q ss_pred             EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-------EEEEECCCcEEEEECCCCCcccCCCCCCCCCC
Q psy8895         235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-------LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG  307 (479)
Q Consensus       235 ~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-------l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  307 (479)
                      .++..-..+.--|+..|+.+..+.-|.. |.-+.+.|+.+.       -+.|-.|+.|.-||++-...          . 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~----------~-  417 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK----------N-  417 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc----------c-
Confidence            3444555677778899999988887776 777778877542       23456788899999862211          0 


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE
Q psy8895         308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF  387 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l  387 (479)
                        .+.+....++ .+.        .+........+..++.||.+|.||+||--..+....+++...+|..|..+.+|..+
T Consensus       418 --kl~~~q~kqy-~~k--------~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi  486 (644)
T KOG2395|consen  418 --KLAVVQSKQY-STK--------NNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI  486 (644)
T ss_pred             --eeeeeecccc-ccc--------cccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence              1111110000 000        00000011233467899999999999973333334567788899999999999988


Q ss_pred             EEEcCCcEEEEe
Q psy8895         388 ASASPDNIKQWK  399 (479)
Q Consensus       388 ~s~s~d~i~~w~  399 (479)
                      .+.....+.+-+
T Consensus       487 l~Tc~tyLlLi~  498 (644)
T KOG2395|consen  487 LATCKTYLLLID  498 (644)
T ss_pred             EEecccEEEEEE
Confidence            777776655444

>KOG1920|consensus

Probab=96.02  E-value=0.43  Score=51.15  Aligned_cols=176  Identities=10%  Similarity=0.141  Sum_probs=103.9

Q ss_pred             cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC----CC
Q psy8895         262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED----DS  337 (479)
Q Consensus       262 ~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~----~~  337 (479)
                      +.|.++.|..+...+..+..+|.|.+-|.++..... .  .....+|.++.|+|++..++..+..+++.+-...    ..
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-v--g~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI-V--GNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceee-e--eeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence            578899998888888888888989888876543221 1  1245789999999999999999988887663321    11


Q ss_pred             CC-----CCCCeEEEEeCCCcEEEEECCCCee-----E---EEEc--cCCCceEEEEEeCCCcEEEEE-----cC-CcEE
Q psy8895         338 AT-----EESHPVITGSHDCTIRLWDLAAGKS-----L---CTLT--NHKKSVRSVALHPTLYMFASA-----SP-DNIK  396 (479)
Q Consensus       338 ~~-----~~~~~l~sgs~d~~v~iwd~~~~~~-----~---~~~~--~h~~~v~~i~~~~~~~~l~s~-----s~-d~i~  396 (479)
                      ..     ......++.++.+.=.-+.-..++.     .   +.+.  ...+.=++|.|-.||++||..     .+ .+++
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir  225 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR  225 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence            10     0112235555544222222111110     0   0000  011122568999999999873     23 3599


Q ss_pred             EEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE---eCCCcEEEEec
Q psy8895         397 QWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG---ADNGTMCFWDW  441 (479)
Q Consensus       397 ~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg---~~dg~i~lWd~  441 (479)
                      +||.. |.+-..-..-.+.-.++++-|.| .+++-   .+|+.|.+++.
T Consensus       226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            99976 43322211122233467788877 66653   34668988884

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.93  E-value=0.54  Score=36.11  Aligned_cols=65  Identities=18%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             EEEEEEc---CCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         222 VRCVAVE---PGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       222 v~~~~~~---~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      |.++++.   .+| +.|+.||.|..||+|+-.  ..+..+.. .+.|.+++-... ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence            5666654   343 579999999999999754  45555553 346777776665 46778889999999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=95.78  E-value=1.1  Score=40.59  Aligned_cols=195  Identities=16%  Similarity=0.248  Sum_probs=92.1

Q ss_pred             EEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         256 SLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       256 ~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                      .+.+-...+..++|+|+...|++. ...+.|...+.+ ++.... .....-+....+++..++.++++.-.++.+.+++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~-i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR-IPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE-EE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE-EeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            455666679999999987766654 455666666653 232211 11122344666777777766666656666666654


Q ss_pred             CCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC---C-eE-Eee
Q psy8895         335 DDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE---G-KF-IQN  408 (479)
Q Consensus       335 ~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~---~-~~-~~~  408 (479)
                      ........  .      ..+.-+++.      ....+...+..++++|....|..+-+.. ..++....   . .. ...
T Consensus        94 ~~~~~~~~--~------~~~~~~~l~------~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~  159 (248)
T PF06977_consen   94 DDDTTSLD--R------ADVQKISLG------FPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD  159 (248)
T ss_dssp             ----TT----E------EEEEEEE---------S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred             eccccccc--h------hhceEEecc------cccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence            32111000  0      000001100      0112445688999999765555554442 44443321   1 11 111


Q ss_pred             e------cCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEEEEeE-----ecCCCCCceEEee
Q psy8895         409 L------PGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRLQVRC-----VSGFPKPSVFFFF  467 (479)
Q Consensus       409 ~------~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  467 (479)
                      .      ......++++.+.|..  .++....+..|...| .+|..++.+.+..     -+.+|-++++.+.
T Consensus       160 ~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d  230 (248)
T PF06977_consen  160 DQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD  230 (248)
T ss_dssp             -HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred             ccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence            1      1233457888888764  677778889999999 7788888887775     2445666666544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=95.73  E-value=0.54  Score=36.11  Aligned_cols=90  Identities=18%  Similarity=0.288  Sum_probs=54.2

Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEE-
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV-  421 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~-  421 (479)
                      ..|+.||.|..||+|+-.  ..+..+.. .+.|+++.-...++...+-.++.|-+|+-  .+++-..+.... +.++++ 
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~-~~~~~~~   89 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKSKNQ-VTSMAFY   89 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeeccCCC-eEEEEEE
Confidence            347788888888888644  45666654 45677777666655444444556877764  223333332222 444433 


Q ss_pred             --cCCC--EEEEEeCCCcEEE
Q psy8895         422 --NNEG--VLVSGADNGTMCF  438 (479)
Q Consensus       422 --~~~~--~l~sg~~dg~i~l  438 (479)
                        +.||  -|++|-.+|.|.+
T Consensus        90 D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   90 DINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cCCCCCceEEEEEecCCeEEe
Confidence              3455  5999999998753

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.63  E-value=0.04  Score=35.18  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL  253 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~  253 (479)
                      ...|.+++|+|..++||.|+.+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356899999999999999999999999998 5543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.51  E-value=4.2  Score=43.29  Aligned_cols=60  Identities=18%  Similarity=0.220  Sum_probs=39.8

Q ss_pred             EEEEeCCCCeEEeeecC-Ccc--------eEEEEEEcC-CC----EEEEEeCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         395 IKQWKCPEGKFIQNLPG-HNA--------IINSICVNN-EG----VLVSGADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~-h~~--------~v~~l~~~~-~~----~l~sg~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      +.-.|..+|+..-..+. |.+        ...-+.+.. ++    .++.+..+|.+.+.|.+||+.+-..+-+.
T Consensus       416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e~~  489 (764)
T TIGR03074       416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEEVP  489 (764)
T ss_pred             EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeeceeec
Confidence            55567888887655543 221        111122322 44    68899999999999999999987765554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG1008|consensus

Probab=95.51  E-value=0.0035  Score=61.61  Aligned_cols=78  Identities=17%  Similarity=0.240  Sum_probs=57.1

Q ss_pred             EecCCCccEEEEEEcC-CCcEEEEEe----CCCeEEEEECCCC--ce--EEEEec-CCcCEEEEEEcCCCCEEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEP-GNEWFATGS----ADKIIKVWDLATG--KL--KLSLTG-HVGSVRGLTVSPRHPYLFSCGDDR  283 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~-~g~~l~sgs----~d~~i~iWd~~~~--~~--~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~  283 (479)
                      ...+|....++++|++ |.+.||.|-    .|..+.|||+.++  .+  ...+.+ -.....+++|-.+.+.+++|...+
T Consensus        97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr  176 (783)
T KOG1008|consen   97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR  176 (783)
T ss_pred             ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence            3457888999999987 567777764    3567999999876  11  122332 223456888888888899998888


Q ss_pred             cEEEEECC
Q psy8895         284 TVKCWDLE  291 (479)
Q Consensus       284 ~i~~wd~~  291 (479)
                      .++++|++
T Consensus       177 ~~~ifdlR  184 (783)
T KOG1008|consen  177 SVHIFDLR  184 (783)
T ss_pred             hhhhhhhh
Confidence            99999987

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.43  E-value=3  Score=41.07  Aligned_cols=48  Identities=27%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       242 ~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      .|+||+.. |+.+..+.=-.+.|.++.|+.+. .|+....||.++++|+.
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            58999864 55555443223789999998854 56677899999999985

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.36  E-value=2.7  Score=41.03  Aligned_cols=200  Identities=14%  Similarity=0.143  Sum_probs=97.5

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE--ec------CCcCEEEEEEc-----CCC---
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL--TG------HVGSVRGLTVS-----PRH---  273 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~--~~------h~~~v~~v~~~-----~~~---  273 (479)
                      .+...+....++|++++.+ |=.+++.|..+|.+.|-|++....+..-  ..      ....++++.|.     .|+   
T Consensus        77 ~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   77 LPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             CchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            3344455568999999997 5569999999999999999877666542  11      12356777775     233   


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC--eEEEEeCCCCCCC-----------
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK--TVKLYKEDDSATE-----------  340 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~~~~~~~~~~-----------  340 (479)
                      ..++.|...|.+.+|.+.-..           ..-+.+.+-..    .....+.  .|..++.+.....           
T Consensus       156 i~L~vGTn~G~v~~fkIlp~~-----------~g~f~v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~  220 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKILPSS-----------NGRFSVQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLS  220 (395)
T ss_dssp             EEEEEEETTSEEEEEEEEE-G-----------GG-EEEEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGG
T ss_pred             eEEEEEeCCCCEEEEEEecCC-----------CCceEEEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccc
Confidence            356677788888888763100           00011111000    0000111  1222333222110           


Q ss_pred             ---CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe-----CCCcEEEEEcCC-cEEEEeCCCCeEEeeecC
Q psy8895         341 ---ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH-----PTLYMFASASPD-NIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       341 ---~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~-----~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~  411 (479)
                         .-+-++....+..+|++...+.+..+...........+.+-     ..+..|++-..+ .++++.++.-+.+..++-
T Consensus       221 ~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l  300 (395)
T PF08596_consen  221 KGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL  300 (395)
T ss_dssp             GT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred             cCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence               11223444557789999998877665543322233444442     245566655544 699999998877766544


Q ss_pred             Cc----ceEEEEEEcCCC
Q psy8895         412 HN----AIINSICVNNEG  425 (479)
Q Consensus       412 h~----~~v~~l~~~~~~  425 (479)
                      ..    ..+...+++++|
T Consensus       301 ~~~~d~~~~~~ssis~~G  318 (395)
T PF08596_consen  301 PPPLDSRRLSSSSISRNG  318 (395)
T ss_dssp             SS---HHHHTT-EE-TTS
T ss_pred             CCccccccccccEECCCC
Confidence            32    123334556666

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2444|consensus

Probab=95.36  E-value=0.026  Score=48.83  Aligned_cols=101  Identities=12%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEE-EccCCCceEEEE-EeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecCCc-ceEE
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKKSVRSVA-LHPTL-YMFASASPDNIKQWKCPEGKFIQNLPGHN-AIIN  417 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~~v~~i~-~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~h~-~~v~  417 (479)
                      +..++.|+.+|.|++|+......... ...-..+|-++- .-.++ ...++++++.|+.|+...++.+.....|. ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34588999999999998762211111 111112222221 11222 33445556679999998888877776676 3444


Q ss_pred             EEEEc-CCCEEEEE--eCCCcEEEEecC
Q psy8895         418 SICVN-NEGVLVSG--ADNGTMCFWDWR  442 (479)
Q Consensus       418 ~l~~~-~~~~l~sg--~~dg~i~lWd~~  442 (479)
                      .+... .+..++..  |.|..++.|++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchh
Confidence            43333 33456665  677777777765

>KOG3621|consensus

Probab=95.20  E-value=0.4  Score=48.32  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      .|.--+++....+++-|+.-|.+++|.-..+........ ...+.+.....+++..+++.|+..+.|-++.+....... 
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~-  112 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD-  112 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhccccc-CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc-
Confidence            344446666778999999999999998654443322211 133455566677777788888888888877765522221 


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCC
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPE  402 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~  402 (479)
                       .++....|                 +.|...|++++|++++..+.+|... .|..-.+.+
T Consensus       113 -~~~~t~~d-----------------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  113 -LDYVTPCD-----------------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             -ceeecccc-----------------ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence             12222111                 1278899999999998888777655 454444433

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=95.19  E-value=0.23  Score=52.04  Aligned_cols=96  Identities=15%  Similarity=0.251  Sum_probs=69.9

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCCCc-eEEEEEeC------CCcEEEEEcCCcEEEEeCCCC--eEEee-e-c-CC
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKS-VRSVALHP------TLYMFASASPDNIKQWKCPEG--KFIQN-L-P-GH  412 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~-v~~i~~~~------~~~~l~s~s~d~i~~w~~~~~--~~~~~-~-~-~h  412 (479)
                      |........++-.|++.|+.+..++.|... |..++=..      ..+.|++-+.+.+..||..-.  +++.. . . ..
T Consensus       497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~  576 (794)
T PF08553_consen  497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS  576 (794)
T ss_pred             eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence            344456688999999999999998877643 55554221      246788888888999998643  23321 1 1 13


Q ss_pred             cceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         413 NAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       413 ~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      +...+|++-+.+|.||.|+.+|.||+||
T Consensus       577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd  604 (794)
T PF08553_consen  577 KNNFSCFATTEDGYIAVGSNKGDIRLYD  604 (794)
T ss_pred             CCCceEEEecCCceEEEEeCCCcEEeec
Confidence            4467888999999999999999999999

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.02  E-value=1.8  Score=44.63  Aligned_cols=160  Identities=13%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             cCEEEEEEcCCCCEEEEEE------CCCcEEEE--ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy8895         262 GSVRGLTVSPRHPYLFSCG------DDRTVKCW--DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK  333 (479)
Q Consensus       262 ~~v~~v~~~~~~~~l~s~~------~d~~i~~w--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~  333 (479)
                      ..+.+.+++|+|..++..-      .|..-.+|  +.........     .......-.|+|++..+.+......+..  
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt-----~g~~~t~PsWspDG~~lw~v~dg~~~~~--  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL-----EGHSLTRPSWSLDADAVWVVVDGNTVVR--  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee-----cCCCCCCceECCCCCceEEEecCcceEE--
Confidence            3577889999999877554      24444444  5422211111     1123667889999887776654322211  


Q ss_pred             CCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEE---EeCCCCeE-E---
Q psy8895         334 EDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ---WKCPEGKF-I---  406 (479)
Q Consensus       334 ~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~---w~~~~~~~-~---  406 (479)
                                 +......+.+.+.++..+....   ...+.|..+.||||+..++-...+.+.+   -....|+. +   
T Consensus       423 -----------v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~  488 (591)
T PRK13616        423 -----------VIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNP  488 (591)
T ss_pred             -----------EeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeeccc
Confidence                       1111234556666776655433   2345799999999998877766665544   34344541 1   


Q ss_pred             eeec-CCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         407 QNLP-GHNAIINSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       407 ~~~~-~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      ..+. +-...+..+.+.+++.|+.+..++.-.+|.+.
T Consensus       489 ~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        489 REVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN  525 (591)
T ss_pred             EEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence            1121 22233567888888866666665555566654

>KOG3617|consensus

Probab=95.01  E-value=0.06  Score=55.03  Aligned_cols=90  Identities=17%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      .|.|-|| +.+|++-..... .-.+++++|+|..-.|+.+..- .+.+|...+.+.-.....|+.++..+.||++| .++
T Consensus        40 ~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~  117 (1416)
T KOG3617|consen   40 GGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLM  117 (1416)
T ss_pred             CceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEE
Confidence            3455555 244554332221 1125679999998888887665 48999987777666667899999999999999 999


Q ss_pred             EEeCCCcEEEEecC
Q psy8895         429 SGADNGTMCFWDWR  442 (479)
Q Consensus       429 sg~~dg~i~lWd~~  442 (479)
                      |+..-|.+.+|...
T Consensus       118 t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen  118 TLDNPGSVHLWRYD  131 (1416)
T ss_pred             EcCCCceeEEEEee
Confidence            99999999999866

>KOG2395|consensus

Probab=94.82  E-value=0.24  Score=48.25  Aligned_cols=96  Identities=15%  Similarity=0.271  Sum_probs=70.6

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC--------cEEEEEcCCcEEEEeCCC-Ce-EEeeecCC--
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL--------YMFASASPDNIKQWKCPE-GK-FIQNLPGH--  412 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--------~~l~s~s~d~i~~w~~~~-~~-~~~~~~~h--  412 (479)
                      +.++..-..++-.|++.|+.+...+-+.. |+-+.+.|+.        +.|++-++..+..||..- +. .+-.-++|  
T Consensus       349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy  427 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY  427 (644)
T ss_pred             eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence            45566667788889999999998877765 7777777763        466777788899999752 22 22223333  


Q ss_pred             --cceEEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         413 --NAIINSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       413 --~~~v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                        +..-+|.+-..+|++|.||.+|.||+||.
T Consensus       428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr  458 (644)
T KOG2395|consen  428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR  458 (644)
T ss_pred             ccccccceeeecCCceEEEeecCCcEEeehh
Confidence              23467778888999999999999999996

>PRK02888 nitrous-oxide reductase; Validated

Probab=94.81  E-value=0.47  Score=48.11  Aligned_cols=96  Identities=18%  Similarity=0.186  Sum_probs=64.9

Q ss_pred             CCeEEEEECCC----C-ceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccC---------CCCCCC
Q psy8895         240 DKIIKVWDLAT----G-KLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQ---------PGSMDS  304 (479)
Q Consensus       240 d~~i~iWd~~~----~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~---------~~~~~~  304 (479)
                      ++.|.+.|..+    + ..+..+. -....+.+.++|||++++.+ ..++++.+.|+++.+....         ......
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev  373 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL  373 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc
Confidence            46788888887    3 3333333 23356889999999988765 5689999999986543110         011111


Q ss_pred             CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy8895         305 ESGIFSMTFDNSGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       305 ~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  336 (479)
                      .-+.....|+++|....+-..|..+-.|+...
T Consensus       374 GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        374 GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            23445788999988888888888888898654

>KOG2079|consensus

Probab=94.67  E-value=0.82  Score=48.59  Aligned_cols=99  Identities=14%  Similarity=0.138  Sum_probs=67.7

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceE-EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC-CCCCCCC
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLK-LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG-SMDSESG  307 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~  307 (479)
                      .+-+++.|+..|.+...|+...-.. ..=..-.++|.+++|+.+|..++.|-.+|.|.+||+...+...... ...+..+
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~  177 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG  177 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence            3567888888899988887654111 1111124689999999999999999999999999997655433221 1223445


Q ss_pred             eEEEEEeCCCCEEEEEeCCCe
Q psy8895         308 IFSMTFDNSGSRLITTEADKT  328 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~  328 (479)
                      +..+.+..++..+.++..-|.
T Consensus       178 vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  178 VIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             EEEEEEeCCCcEEEEccCCCc
Confidence            666666666666777666664

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=94.65  E-value=2.7  Score=41.40  Aligned_cols=160  Identities=19%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             cCEEEEEEcCCCCEEEEEE---CC-CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCC
Q psy8895         262 GSVRGLTVSPRHPYLFSCG---DD-RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDD  336 (479)
Q Consensus       262 ~~v~~v~~~~~~~~l~s~~---~d-~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~  336 (479)
                      ..+..-+|+|++..++..+   .. ..+.++|++.++......   ..+.-..-+|+|+|+.++-. ..|+..       
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~---~~g~~~~P~fspDG~~l~f~~~rdg~~-------  262 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN---FNGNNGAPAFSPDGSKLAFSSSRDGSP-------  262 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec---cCCccCCccCCCCCCEEEEEECCCCCc-------
Confidence            3555667888887765432   22 358888988766543322   12223346788888876533 233322       


Q ss_pred             CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCC
Q psy8895         337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h  412 (479)
                                      .|.+.|+.... +..+..-.+.-+.=.|+||+..++-.++.    .|.+.+...+.. ..+...
T Consensus       263 ----------------~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         263 ----------------DIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             ----------------cEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence                            34555665544 22233222222355789999877766654    267777765544 222222


Q ss_pred             cceEEEEEEcCCC-EEEEEe-CCCc--EEEEecCCCeEEEE
Q psy8895         413 NAIINSICVNNEG-VLVSGA-DNGT--MCFWDWRTGYNFQR  449 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~-~dg~--i~lWd~~~~~~~~~  449 (479)
                      .+.-..-.++||| +++..+ .+|.  |.+.|+.++...+.
T Consensus       325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~  365 (425)
T COG0823         325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRI  365 (425)
T ss_pred             CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEE
Confidence            1111145678998 555444 3455  67777776654333

>KOG4441|consensus

Probab=94.63  E-value=5.2  Score=41.26  Aligned_cols=210  Identities=14%  Similarity=0.199  Sum_probs=104.4

Q ss_pred             CCcEEEEEeCC------CeEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEEECC------CcEEEEECCCCCcc
Q psy8895         230 GNEWFATGSAD------KIIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSCGDD------RTVKCWDLEYNKAP  296 (479)
Q Consensus       230 ~g~~l~sgs~d------~~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~  296 (479)
                      .+..++.|+.+      ..+..+|..++........... .-.++++. ++...++||.|      .++..||..+.+..
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            45666777776      4688899888754332222221 22344444 44567788888      36667888766533


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCCC-----------------CCCCeEEEEeCCC--
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDDSAT-----------------EESHPVITGSHDC--  352 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~~-----------------~~~~~l~sgs~d~--  352 (479)
                      . .........-..++ .-+|...++|+.|+     ++..||.....=                 ..+...+.|+.|+  
T Consensus       363 ~-~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 P-VAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             c-cCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence            2 11111111111111 12466777888776     356677654320                 1123456666554  


Q ss_pred             ----cEEEEECCCCe--eEEEEccCCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCeE--EeeecCCcceEEE
Q psy8895         353 ----TIRLWDLAAGK--SLCTLTNHKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGKF--IQNLPGHNAIINS  418 (479)
Q Consensus       353 ----~v~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~~--~~~~~~h~~~v~~  418 (479)
                          ++..||..+++  .+..+..-+... .++.. ++.+++.|+.+      .+..+|..+.+-  +..+......+. 
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-  517 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-  517 (571)
T ss_pred             cccceEEEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-
Confidence                45667766542  222222111121 23333 34455555433      267788765543  222322222222 


Q ss_pred             EEEcCCCEEEEEeCCCc-----EEEEecCCCe
Q psy8895         419 ICVNNEGVLVSGADNGT-----MCFWDWRTGY  445 (479)
Q Consensus       419 l~~~~~~~l~sg~~dg~-----i~lWd~~~~~  445 (479)
                      ++...+...+.|+.||.     |..||..+++
T Consensus       518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             EEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence            23333446777887754     6677766653

>PHA02713 hypothetical protein; Provisional

Probab=94.60  E-value=1.9  Score=44.38  Aligned_cols=207  Identities=9%  Similarity=0.023  Sum_probs=89.5

Q ss_pred             CCcEEEEEeCC------CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcccC
Q psy8895         230 GNEWFATGSAD------KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR-----TVKCWDLEYNKAPVQ  298 (479)
Q Consensus       230 ~g~~l~sgs~d------~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~  298 (479)
                      ++..++.|+.+      ..+..||..+......-......-......-+++..+.||.++     ++..||+.+......
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            56777777753      3467788877643221111111111112223566667777653     478899876543221


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE-EeCCCcEEEEECCCCe--eEEEEccCCCce
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT-GSHDCTIRLWDLAAGK--SLCTLTNHKKSV  375 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s-gs~d~~v~iwd~~~~~--~~~~~~~h~~~v  375 (479)
                      ............+.  -++...+.|+.++.... ....  ......... ...-.++..||..+.+  .+..+...... 
T Consensus       383 ~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~-~~~~--~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-  456 (557)
T PHA02713        383 PDMPIALSSYGMCV--LDQYIYIIGGRTEHIDY-TSVH--HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-  456 (557)
T ss_pred             CCCCcccccccEEE--ECCEEEEEeCCCccccc-cccc--ccccccccccccccceEEEECCCCCeEeecCCCCccccc-
Confidence            11001111111121  13445555554321100 0000  000000000 0001347777776542  22222111111 


Q ss_pred             EEEEEeCCCcEEEEEcCC-------cEEEEeCCC-C--eEEeeecCCcceEEEEEEcCCCEEEEEeCCC--cEEEEecCC
Q psy8895         376 RSVALHPTLYMFASASPD-------NIKQWKCPE-G--KFIQNLPGHNAIINSICVNNEGVLVSGADNG--TMCFWDWRT  443 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d-------~i~~w~~~~-~--~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg--~i~lWd~~~  443 (479)
                      .+++.. ++.+++.|+.+       .+..||..+ .  +.+..++....... ++...+...+.|+.||  ++..||..|
T Consensus       457 ~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~~~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        457 PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TILHDNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce-eEEECCEEEEEeeecceeehhhcCccc
Confidence            122222 34444544421       256788765 2  33344444333222 2333445778898888  777888776


Q ss_pred             C
Q psy8895         444 G  444 (479)
Q Consensus       444 ~  444 (479)
                      +
T Consensus       535 ~  535 (557)
T PHA02713        535 Y  535 (557)
T ss_pred             c
Confidence            5

>KOG2079|consensus

Probab=94.56  E-value=0.11  Score=54.60  Aligned_cols=96  Identities=18%  Similarity=0.372  Sum_probs=64.7

Q ss_pred             EEEEeCCCcEEEEECCCC-eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE--
Q psy8895         345 VITGSHDCTIRLWDLAAG-KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC--  420 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~-~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~--  420 (479)
                      ++.|+..|.+...|+... ++...=+.-.++|++++|+.++..++.|-.++ |.+||...++..+.+..|..+++.+-  
T Consensus       102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v  181 (1206)
T KOG2079|consen  102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV  181 (1206)
T ss_pred             EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence            455666666666665542 11111122357899999999999888887665 99999999999888876665554443  


Q ss_pred             --EcCCCEEEEEeCCCcEEEEecC
Q psy8895         421 --VNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       421 --~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                        .+.+..++++..-|.  +|...
T Consensus       182 ~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  182 GRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             EEeCCCcEEEEccCCCc--eEEEE
Confidence              344457888777776  67654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.47  E-value=0.85  Score=43.94  Aligned_cols=213  Identities=15%  Similarity=0.153  Sum_probs=107.8

Q ss_pred             cCCCcEEEEEe---------CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         228 EPGNEWFATGS---------ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       228 ~~~g~~l~sgs---------~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      |||+++++...         ..+..-++|+.+++....... ...+....|+|+|..++-. .++.|.+.+...+.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe
Confidence            46676655532         235688999999766433222 5577889999999998876 457899998765532211


Q ss_pred             CCCCCC---------------CCCeEEEEEeCCCCEEEEEeCCC-eEEEEeCCCCCCCCC--CeE------EEEeCCC--
Q psy8895         299 PGSMDS---------------ESGIFSMTFDNSGSRLITTEADK-TVKLYKEDDSATEES--HPV------ITGSHDC--  352 (479)
Q Consensus       299 ~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~d~-~i~~~~~~~~~~~~~--~~l------~sgs~d~--  352 (479)
                      ......               -..-..+.|+|++++++....|. .++.+..........  ..+      ..|..+-  
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            100000               11223588999999888765443 233322111100000  000      1122222  


Q ss_pred             cEEEEECCCCeeEE--EE---ccCCCceEEEEEeCCCc-EEEEEcC-C--c--EEEEeCCCCeEEeeec-CCcceE---E
Q psy8895         353 TIRLWDLAAGKSLC--TL---TNHKKSVRSVALHPTLY-MFASASP-D--N--IKQWKCPEGKFIQNLP-GHNAII---N  417 (479)
Q Consensus       353 ~v~iwd~~~~~~~~--~~---~~h~~~v~~i~~~~~~~-~l~s~s~-d--~--i~~w~~~~~~~~~~~~-~h~~~v---~  417 (479)
                      .+.++|+.+++...  ..   ..-...+..+.|.+++. +++.-.+ +  .  +.+.|..+++...... ...+.|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            45668988876532  22   23356789999999988 4433322 2  2  5556776654322111 111222   2


Q ss_pred             EEEEc-CCC--EEEEEeCCCcEEEEecC
Q psy8895         418 SICVN-NEG--VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       418 ~l~~~-~~~--~l~sg~~dg~i~lWd~~  442 (479)
                      ...+. +++  +|.....||.-+|+-+.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence            33333 443  45444577776655444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=7.1  Score=38.07  Aligned_cols=166  Identities=21%  Similarity=0.274  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCcEEEEEeC---CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCccc
Q psy8895         222 VRCVAVEPGNEWFATGSA---DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~---d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~  297 (479)
                      -..++++++++.+..+..   ++++.+-|..+++.......-..+ ..++++|+|..++.. ..++.+.+.|........
T Consensus       118 P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~  196 (381)
T COG3391         118 PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR  196 (381)
T ss_pred             CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence            356889999977665554   688889998888877765433344 789999999966655 478899999976543321


Q ss_pred             -CCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE-Ec-cCCC
Q psy8895         298 -QPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT-LT-NHKK  373 (479)
Q Consensus       298 -~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~-~~-~h~~  373 (479)
                       ... ..........+.+++++..+.+....                      +.++++...|..++..... .. +.. 
T Consensus       197 ~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~----------------------~~~~~v~~id~~~~~v~~~~~~~~~~-  253 (381)
T COG3391         197 GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG----------------------SGSNNVLKIDTATGNVTATDLPVGSG-  253 (381)
T ss_pred             cccccccccCCCCceEEECCCCCEEEEEecc----------------------CCCceEEEEeCCCceEEEeccccccC-
Confidence             000 01222334567777777765543221                      1256777777777666554 11 111 


Q ss_pred             ceEEEEEeCCCcEEEEEcC--CcEEEEeCCCCeEEeeecC
Q psy8895         374 SVRSVALHPTLYMFASASP--DNIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~--d~i~~w~~~~~~~~~~~~~  411 (479)
                      .-..+.++|++..+.....  +.+.+-|..+.........
T Consensus       254 ~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         254 APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence            3456788998876665533  3588888877777665443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.77  E-value=1.7  Score=42.96  Aligned_cols=129  Identities=12%  Similarity=0.158  Sum_probs=71.1

Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceE
Q psy8895         308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVR  376 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~  376 (479)
                      ...+.++|+++.+++ +.++.-.++.......           .....+++-..+++|.++.--+.+..+.++- ...+.
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~  112 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVE  112 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EE
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-Ccccc
Confidence            457889999998888 6667777776332111           0134456666677787752222222223321 22344


Q ss_pred             EEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         377 SVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       377 ~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .|-.   |.+|...+.+.|.+||..+++.+.++....  |..+.+++++ +++-.+. ..+.+.+.+..
T Consensus       113 ~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g~~val~t~-~~i~il~~~~~  175 (443)
T PF04053_consen  113 KIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA--VKYVIWSDDGELVALVTK-DSIYILKYNLE  175 (443)
T ss_dssp             EEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E---EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             eEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC--CcEEEEECCCCEEEEEeC-CeEEEEEecch
Confidence            4433   777877777789999999999999887553  7888999998 5555554 47777776544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.67  E-value=5.5  Score=36.36  Aligned_cols=120  Identities=13%  Similarity=0.223  Sum_probs=83.9

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +.|-...+.++.|+|+.+.|++......-.||=...|+.+.++.  +-.+ -..+.+..++.++++--.++.+.++.+..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            44556669999999999999998888888888778888876543  3222 24567777887877777788888876654


Q ss_pred             CCccc-------CCCCCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         293 NKAPV-------QPGSMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       293 ~~~~~-------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                      .....       ...... .+.+..-++|+|....+..+-...-+.+|...
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence            32111       111111 24567789999999888888877777777655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.45  E-value=8.6  Score=37.95  Aligned_cols=155  Identities=21%  Similarity=0.176  Sum_probs=83.7

Q ss_pred             ccEEEEEEcCCCcEEEEEe---CC-CeEEEEECCCCceEE--EEecCCcCEEEEEEcCCCCEEEE-EECCCcEE--EEEC
Q psy8895         220 GWVRCVAVEPGNEWFATGS---AD-KIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVK--CWDL  290 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs---~d-~~i~iWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~--~wd~  290 (479)
                      ..+..-+|+|+++.++-.+   .. ..+.++|+.+++...  .+.++.   ..-+|+|||+.++- ...|+...  +.|+
T Consensus       193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence            4455566778776544322   22 468899998886543  344443   34479999998774 45666554  4566


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      ...+.....   ...+.-..-.|+|+|+.++-.+. .|.-                       .|.+.|.+.+.. ..+.
T Consensus       270 ~~~~~~~Lt---~~~gi~~~Ps~spdG~~ivf~Sdr~G~p-----------------------~I~~~~~~g~~~-~riT  322 (425)
T COG0823         270 DGKNLPRLT---NGFGINTSPSWSPDGSKIVFTSDRGGRP-----------------------QIYLYDLEGSQV-TRLT  322 (425)
T ss_pred             CCCcceecc---cCCccccCccCCCCCCEEEEEeCCCCCc-----------------------ceEEECCCCCce-eEee
Confidence            554422211   11111124567888887664432 2221                       344455554433 2222


Q ss_pred             cCCCceEEEEEeCCCcEEEEEc--CCc--EEEEeCCCCe
Q psy8895         370 NHKKSVRSVALHPTLYMFASAS--PDN--IKQWKCPEGK  404 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s--~d~--i~~w~~~~~~  404 (479)
                      ...+.-..-.++|++..++..+  .+.  |.+.+..++.
T Consensus       323 ~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         323 FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            2222222567889998887766  232  6666665555

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=93.01  E-value=7.8  Score=36.18  Aligned_cols=155  Identities=12%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+-.+.+..+..++||++++.++......-||.-.......-..-...|..|.|.|++...+. ...+.|+.=+......
T Consensus       141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSDDPDDGE  219 (302)
T ss_dssp             -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred             cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEccCCCCcc
Confidence            344577888888999999998888777788875432222222224568999999999876554 4778887766211111


Q ss_pred             ccCC--CCC-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE---c
Q psy8895         296 PVQP--GSM-DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL---T  369 (479)
Q Consensus       296 ~~~~--~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~---~  369 (479)
                      ....  ... .....+..++|.+++...+++.. +++..                 |.|         .++.-..-   .
T Consensus       220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-----------------S~D---------gGktW~~~~~~~  272 (302)
T PF14870_consen  220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-----------------STD---------GGKTWQKDRVGE  272 (302)
T ss_dssp             EE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-----------------ESS---------TTSS-EE-GGGT
T ss_pred             ccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-----------------eCC---------CCccceECcccc
Confidence            1110  011 12235788999988766665543 22211                 111         22222221   1


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCCcEEEE
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPDNIKQW  398 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d~i~~w  398 (479)
                      .-...+..|.|.+..+-|+-+.++.+..|
T Consensus       273 ~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  273 NVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             TSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            22345778888777778888877765444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.28  E-value=0.47  Score=29.37  Aligned_cols=31  Identities=23%  Similarity=0.346  Sum_probs=26.1

Q ss_pred             cceEEEEEccCC---ceEEEecCCCeEEEEeecc
Q psy8895          34 SSVNTISLHPTI---DVLITAGRDSTARVWDVRT   64 (479)
Q Consensus        34 ~~V~~l~~sp~g---~~laSgs~D~~vriWd~~t   64 (479)
                      +.|+++.|+|++   ++||-+-.-+.|.|+|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999864   5888888889999999985

It contains a characteristic DLL sequence motif.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=92.03  E-value=11  Score=35.44  Aligned_cols=207  Identities=14%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             EcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-c-cC-CCCC
Q psy8895         227 VEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA-P-VQ-PGSM  302 (479)
Q Consensus       227 ~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~-~~-~~~~  302 (479)
                      |.++.. ++.+--..+.|.-|+..+++.. .+... +.+.++..-.++..|+++..  -+.+++.+.... . .. ...-
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            334444 4555556677888888766442 23322 22334433334445555433  356666644333 1 11 1111


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC
Q psy8895         303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP  382 (479)
Q Consensus       303 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~  382 (479)
                      ............|+|..-+.....     ++.......         .-|.++..|. .+..++-+..+-..-+.|+|||
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~-----~~~~~~~~~---------~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~Sp  172 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGY-----FDLGKSEER---------PTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSP  172 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCc-----cccCccccC---------CcceEEEEcC-CCCEEEeecCcEEecCceEECC
Confidence            122445567777777665543331     110010001         1123444443 3444444444444457899999


Q ss_pred             CCcEEEEE-cCC-cEEEEeCCC--CeE-----EeeecCCcceEEEEEEcCCCEEE-EEeCCC-cEEEEecCCCeEEEEEE
Q psy8895         383 TLYMFASA-SPD-NIKQWKCPE--GKF-----IQNLPGHNAIINSICVNNEGVLV-SGADNG-TMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       383 ~~~~l~s~-s~d-~i~~w~~~~--~~~-----~~~~~~h~~~v~~l~~~~~~~l~-sg~~dg-~i~lWd~~~~~~~~~~~  451 (479)
                      |++.|..+ +.. .+..+++..  +..     ......+.+..-.+++..+|.|- ++-.+| .|..|+.+ |+.++.+.
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            99655444 433 366665542  211     12222344556667777777443 444444 99999988 98888876


Q ss_pred             Ee
Q psy8895         452 VR  453 (479)
Q Consensus       452 ~~  453 (479)
                      +.
T Consensus       252 lP  253 (307)
T COG3386         252 LP  253 (307)
T ss_pred             CC
Confidence            66

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.99  E-value=16  Score=37.35  Aligned_cols=65  Identities=15%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCc-CEE----------EEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVG-SVR----------GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~-~v~----------~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      +..++.++.++.|.-.|..+|+.+..+..... .+.          .+++.  +..++.++.|+.+.-.|.++++...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W  144 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVW  144 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEe
Confidence            45666677788899999999998887653211 111          12222  2356677788999999988877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.81  E-value=9.9  Score=34.59  Aligned_cols=224  Identities=17%  Similarity=0.198  Sum_probs=115.5

Q ss_pred             EEEcCCCc-EEEEEeCCC-eEEEEECCCCceEEEEecCCcC--EEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCc
Q psy8895         225 VAVEPGNE-WFATGSADK-IIKVWDLATGKLKLSLTGHVGS--VRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNKA  295 (479)
Q Consensus       225 ~~~~~~g~-~l~sgs~d~-~i~iWd~~~~~~~~~~~~h~~~--v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~  295 (479)
                      ++|+|... -++.+-.-| ...++|...++...++...++.  --.=.|||||.+|+..-.|     |.|-+||.+..-.
T Consensus        73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq  152 (366)
T COG3490          73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ  152 (366)
T ss_pred             eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence            55555433 334444444 3567888777665544322211  0112689999998865333     6888999863221


Q ss_pred             ccCCCCC-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEE-eCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE--EEc--
Q psy8895         296 PVQPGSM-DSESGIFSMTFDNSGSRLITTEADKTVKLY-KEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC--TLT--  369 (479)
Q Consensus       296 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~-~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~--~~~--  369 (479)
                      .  .... .+.-+.-.+.+.++|..++.+.  |-|... +....+...      -+..-.+-+.|..+++.+.  ++.  
T Consensus       153 r--vgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNl------dsMePSlvlld~atG~liekh~Lp~~  222 (366)
T COG3490         153 R--VGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNL------DSMEPSLVLLDAATGNLIEKHTLPAS  222 (366)
T ss_pred             e--ecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccch------hhcCccEEEEeccccchhhhccCchh
Confidence            1  1111 1223345688889999888764  334333 221111100      0111123334444554433  232  


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCCc------EEEEeCCCCeEEeeecCC-------cceEEEEEEcC-CCEEEEEe-CCC
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPDN------IKQWKCPEGKFIQNLPGH-------NAIINSICVNN-EGVLVSGA-DNG  434 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d~------i~~w~~~~~~~~~~~~~h-------~~~v~~l~~~~-~~~l~sg~-~dg  434 (479)
                      -+.-+|+.++..+|+..+..+....      -.+=-...++.+.-+.-.       ...|-+++.+. ++.++..| ...
T Consensus       223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN  302 (366)
T COG3490         223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN  302 (366)
T ss_pred             hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence            3456799999999998877664321      011011123333222211       12366677764 45554444 445


Q ss_pred             cEEEEecCCCeEEEEEEEeEecCC
Q psy8895         435 TMCFWDWRTGYNFQRLQVRCVSGF  458 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~~~~~~~~~  458 (479)
                      ..-+||.+||.-+..-++.-.++.
T Consensus       303 ~~vi~da~tG~vv~~a~l~daaGv  326 (366)
T COG3490         303 RAVIWDAATGAVVSEAALPDAAGV  326 (366)
T ss_pred             eEEEEEcCCCcEEecccccccccc
Confidence            667999999988776666544443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.53  E-value=12  Score=35.17  Aligned_cols=184  Identities=14%  Similarity=0.157  Sum_probs=96.1

Q ss_pred             EEEcCCCcEEEE--EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CCcccC--C
Q psy8895         225 VAVEPGNEWFAT--GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY-NKAPVQ--P  299 (479)
Q Consensus       225 ~~~~~~g~~l~s--gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~--~  299 (479)
                      .++++||++++.  .+--.+|.|-|+..++.+.++...  .+..+--++. +.+.+-+.||++....+.. ++....  .
T Consensus       100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~  176 (342)
T PF06433_consen  100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSGN-RGFSMLCGDGSLLTVTLDADGKEAQKSTK  176 (342)
T ss_dssp             EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEET-TEEEEEETTSCEEEEEETSTSSEEEEEEE
T ss_pred             eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecCC-CceEEEecCCceEEEEECCCCCEeEeecc
Confidence            366788887654  344567889999988887766532  2222211222 3455666778777777653 222110  0


Q ss_pred             CCCCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------------------CCCCeEEEE-
Q psy8895         300 GSMDSESGIF-SMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------------------EESHPVITG-  348 (479)
Q Consensus       300 ~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------------------~~~~~l~sg-  348 (479)
                      ........++ .-.+...+..++--+..|.+.-.++.....                             .....|..- 
T Consensus       177 ~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM  256 (342)
T PF06433_consen  177 VFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM  256 (342)
T ss_dssp             ESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred             ccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence            0011111122 222333344444455556555544332210                             112222221 


Q ss_pred             --e-----CC--CcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEc-C-CcEEEEeCCCCeEEeeecCC
Q psy8895         349 --S-----HD--CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASAS-P-DNIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       349 --s-----~d--~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s-~-d~i~~w~~~~~~~~~~~~~h  412 (479)
                        .     .|  .+|-++|+.+++.+.++.- +..+.+|+++.+. ++|.+.+ . ..+.++|..+|+.++++..-
T Consensus       257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l  331 (342)
T PF06433_consen  257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL  331 (342)
T ss_dssp             EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred             cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence              1     11  2577889999999998863 3467899999865 4554443 3 35999999999999888653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK10115 protease 2; Provisional

Probab=90.84  E-value=25  Score=37.36  Aligned_cols=71  Identities=15%  Similarity=0.084  Sum_probs=44.1

Q ss_pred             cEEEEEEcCCCcEEEEEeC-C----CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC------CcEEEEE
Q psy8895         221 WVRCVAVEPGNEWFATGSA-D----KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD------RTVKCWD  289 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~-d----~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------~~i~~wd  289 (479)
                      .+..+.++|||++|+-+-. +    ..|++-|+.+|..+.......  -..++|.+|++.++....+      ..|..++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            4566788999998765432 2    368889998886432211111  1458999998876654432      3566666


Q ss_pred             CCCC
Q psy8895         290 LEYN  293 (479)
Q Consensus       290 ~~~~  293 (479)
                      +.+.
T Consensus       206 lgt~  209 (686)
T PRK10115        206 IGTP  209 (686)
T ss_pred             CCCC
Confidence            6654

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=17  Score=35.42  Aligned_cols=198  Identities=20%  Similarity=0.262  Sum_probs=114.3

Q ss_pred             EEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCCcccC
Q psy8895         223 RCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD---DRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       223 ~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~  298 (479)
                      ..+++++.+. ..++...++.|.+.|..+.+......--. .-..+++++++..+..+..   ++++.+.|..+......
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~  155 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT  155 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence            3567777776 55666667899999987776665443222 4468899999987766543   68888888776654433


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE-----EEccCCC
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC-----TLTNHKK  373 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~-----~~~~h~~  373 (479)
                       ...+. .+ ..++++|++..+.+..                        +.++++.+.|........     .... ..
T Consensus       156 -~~vG~-~P-~~~a~~p~g~~vyv~~------------------------~~~~~v~vi~~~~~~v~~~~~~~~~~~-~~  207 (381)
T COG3391         156 -IPVGN-TP-TGVAVDPDGNKVYVTN------------------------SDDNTVSVIDTSGNSVVRGSVGSLVGV-GT  207 (381)
T ss_pred             -EecCC-Cc-ceEEECCCCCeEEEEe------------------------cCCCeEEEEeCCCcceecccccccccc-CC
Confidence             11111 12 6788888888665543                        223344444433332221     1111 12


Q ss_pred             ceEEEEEeCCCcEEE-EEcCC---cEEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEE-eCCCcEEEEecCCCeE
Q psy8895         374 SVRSVALHPTLYMFA-SASPD---NIKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSG-ADNGTMCFWDWRTGYN  446 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~-s~s~d---~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg-~~dg~i~lWd~~~~~~  446 (479)
                      .-..+.++|++..+. ....+   .+...|..++..... ...-+.....+.+.|++ .+... +..+.+.+-|..+...
T Consensus       208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence            235678888877443 33332   477777777766554 22211134456778888 44333 3447788877777655


Q ss_pred             EEE
Q psy8895         447 FQR  449 (479)
Q Consensus       447 ~~~  449 (479)
                      ...
T Consensus       288 ~~~  290 (381)
T COG3391         288 VKT  290 (381)
T ss_pred             eee
Confidence            443

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.45  E-value=14  Score=33.86  Aligned_cols=180  Identities=17%  Similarity=0.160  Sum_probs=97.9

Q ss_pred             EecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC
Q psy8895         257 LTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       257 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  336 (479)
                      +.+-...+.++.|+|+.+.|++......-.++=...++.... .....-.....+.+..+++++++--.+..+.++..+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirt-iPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRT-IPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEE-ecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            445555699999999999999887766666653333332211 1111112233466777778887777777776665432


Q ss_pred             CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCe---EEeeecCC
Q psy8895         337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGK---FIQNLPGH  412 (479)
Q Consensus       337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~---~~~~~~~h  412 (479)
                                    |+++...+.. .-++....+.......++++|....|..+-+.+ +.++....+.   ..+....+
T Consensus       160 --------------~t~~~~~~~~-~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~  224 (316)
T COG3204         160 --------------DTTVISAKVQ-KIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP  224 (316)
T ss_pred             --------------CccEEeccce-EEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc
Confidence                          2222111110 011111111134567789999877666666554 5554433221   11222222


Q ss_pred             cc-------eEEEEEEcCC--CEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         413 NA-------IINSICVNNE--GVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       413 ~~-------~v~~l~~~~~--~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ..       .|+++.|++.  ..|+-+.+++.+.--|.. |+.+..+.+.
T Consensus       225 ~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~  273 (316)
T COG3204         225 TADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLT  273 (316)
T ss_pred             ccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEec
Confidence            22       3566677743  367777788877777754 6666666444

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.23  E-value=1.7  Score=26.98  Aligned_cols=32  Identities=22%  Similarity=0.392  Sum_probs=26.2

Q ss_pred             ccEEEEEEcCCC---cEEEEEeCCCeEEEEECCCC
Q psy8895         220 GWVRCVAVEPGN---EWFATGSADKIIKVWDLATG  251 (479)
Q Consensus       220 ~~v~~~~~~~~g---~~l~sgs~d~~i~iWd~~~~  251 (479)
                      +.|.++.|+|++   ++|+-+-.-+.|-|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999754   58888888899999999864

It contains a characteristic DLL sequence motif.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=89.13  E-value=20  Score=33.85  Aligned_cols=91  Identities=11%  Similarity=0.219  Sum_probs=49.7

Q ss_pred             CCcEEEEECCCCe-eEEE-EccCCCceEEEEEeCCCcEEEEEcCCcEEE--EeCCCCeEEee-ecCCcceEEEEEEcCCC
Q psy8895         351 DCTIRLWDLAAGK-SLCT-LTNHKKSVRSVALHPTLYMFASASPDNIKQ--WKCPEGKFIQN-LPGHNAIINSICVNNEG  425 (479)
Q Consensus       351 d~~v~iwd~~~~~-~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~--w~~~~~~~~~~-~~~h~~~v~~l~~~~~~  425 (479)
                      ++.|.+|++...+ .... .......+.++....+ .++++-..+.+.+  |+....++... -......+.++.+-+++
T Consensus       106 g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~-~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~  184 (321)
T PF03178_consen  106 GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKN-YILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDE  184 (321)
T ss_dssp             TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETT-EEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SS
T ss_pred             cCEEEEEEccCcccchhhheecceEEEEEEecccc-EEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCC
Confidence            3567777776655 2222 1122335666666543 4444444556655  45432222211 12235567787776444


Q ss_pred             -EEEEEeCCCcEEEEecC
Q psy8895         426 -VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~  442 (479)
                       .++.+..+|.+.++...
T Consensus       185 ~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  185 DTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEETTSEEEEEEE-
T ss_pred             cEEEEEcCCCeEEEEEEC
Confidence             88999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.92  E-value=5.7  Score=38.84  Aligned_cols=88  Identities=16%  Similarity=0.255  Sum_probs=60.8

Q ss_pred             EEEEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCCcce----EEEEEEcCC--------------C
Q psy8895         365 LCTLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGHNAI----INSICVNNE--------------G  425 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h~~~----v~~l~~~~~--------------~  425 (479)
                      ...+......+.+|..+|.+.+.|.... +.|.++|+.++..++.++|-++.    +....-...              .
T Consensus       300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            3455556667899999999887666522 25999999999998888886642    222221111              1


Q ss_pred             -E-EEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         426 -V-LVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       426 -~-l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                       + ++-.-.-|.|.||.+++|..+..+++
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence             2 33455689999999999988776654

>PHA03098 kelch-like protein; Provisional

Probab=88.20  E-value=33  Score=35.15  Aligned_cols=65  Identities=15%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             CCcEEEEEeCCC------eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCC
Q psy8895         230 GNEWFATGSADK------IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNK  294 (479)
Q Consensus       230 ~g~~l~sgs~d~------~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~  294 (479)
                      ++..++.|+.++      .+..||..+.+....-.............-++...+.||.+     ..+..||+.+.+
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            466777777543      46778887765532111111111111112255666677755     356677776544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=87.89  E-value=13  Score=36.70  Aligned_cols=62  Identities=15%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeC
Q psy8895         339 TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKC  400 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~  400 (479)
                      ...+.+++.||..|-||+||--.-+....+++....|..|..+.+|..+.+.....+.+-|+
T Consensus       570 tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~  631 (776)
T COG5167         570 TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDV  631 (776)
T ss_pred             cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEec
Confidence            34556789999999999999654444445666777899999999988776666666666554

>KOG4499|consensus

Probab=87.88  E-value=19  Score=31.89  Aligned_cols=40  Identities=15%  Similarity=0.139  Sum_probs=33.4

Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP  382 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~  382 (479)
                      .+.++.-..++|.-.|..+++.+.+++-+...|++++|-.
T Consensus       224 ~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  224 NLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             cEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            3455666678899999999999999988889999999964

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.80  E-value=4.4  Score=35.94  Aligned_cols=64  Identities=13%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             EcCCCcEEEEEeCCCeEEEEECCCCceEEE-------Ee-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         227 VEPGNEWFATGSADKIIKVWDLATGKLKLS-------LT-------GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       227 ~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~-------~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      +..++++++.-..+|.+.+||+.+++....       +.       .....|..+.++.+|.-+++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            345688999999999999999998876432       11       2446788888888887666654 4677888764

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=87.52  E-value=4.5  Score=38.37  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=65.1

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      ..++|++++-- ++. |+.+. ++.|.+|++...+ ....-. .....+.++...  +.+++.|..-+.+.++.......
T Consensus        87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE
T ss_pred             ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC
Confidence            46789988855 455 44433 4789999998777 433222 122356666655  44888888888888875432111


Q ss_pred             -ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         296 -PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       296 -~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                       ............+.++.+-++++.++.+..+|.+.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence             1111111122346667776555677778888887777654

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.84  E-value=1.1  Score=46.06  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=31.0

Q ss_pred             cceEEEEEcc----CCceEEEecCCCeEEEEeecccceEeeecc
Q psy8895          34 SSVNTISLHP----TIDVLITAGRDSTARVWDVRTKANVYTLTG   73 (479)
Q Consensus        34 ~~V~~l~~sp----~g~~laSgs~D~~vriWd~~t~~~~~~~~~   73 (479)
                      +.+..+++++    +..+|++.+.|+++|+||+.+++++.+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred             CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence            4566777777    678999999999999999999999876643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=86.57  E-value=26  Score=33.77  Aligned_cols=214  Identities=17%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             EEcCCCcEEEE-EeCCC--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC
Q psy8895         226 AVEPGNEWFAT-GSADK--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       226 ~~~~~g~~l~s-gs~d~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      +|.+||+.|+. +..|+  .+.+-|+.+++..+.-.+.........++|+.+.++-...+..|+--|+++.+......  
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~--  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE--  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE--
Confidence            46778866554 44455  45566888887765433322222245667888887776667788888988755321110  


Q ss_pred             CCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCCCCCCCC---CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         303 DSESGIFSMTF--DNSGSRLITTEADKTVKLYKEDDSATEES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       303 ~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      -+....-...+  +.++..++-.-      +-+.+.......   ..+..+--.+.|.--|+.+++....+. -..-+..
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e------~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH  192 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIE------ISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGH  192 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEE------EEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEE
T ss_pred             CCcccccccceeeCCCccEEEEEE------EeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccC
Confidence            01111111222  22333322111      100000000000   001111123446666888876544443 3445778


Q ss_pred             EEEeCC-CcEEEEEcCC---cE--EEEeCCC-CeEEeeecCCc--ceEEEEEEcCCC-EEE--E---EeCCCcEEEEecC
Q psy8895         378 VALHPT-LYMFASASPD---NI--KQWKCPE-GKFIQNLPGHN--AIINSICVNNEG-VLV--S---GADNGTMCFWDWR  442 (479)
Q Consensus       378 i~~~~~-~~~l~s~s~d---~i--~~w~~~~-~~~~~~~~~h~--~~v~~l~~~~~~-~l~--s---g~~dg~i~lWd~~  442 (479)
                      +-|+|. ..+++-|-++   .|  ++|-+.+ +...+.+..|.  ..+.-=.|.+|| .|.  +   ++.+..|.-.|.+
T Consensus       193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~  272 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD  272 (386)
T ss_dssp             EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred             cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence            899995 4566666554   23  6786532 33333333332  223333567777 322  2   2234567777888


Q ss_pred             CCeEEE
Q psy8895         443 TGYNFQ  448 (479)
Q Consensus       443 ~~~~~~  448 (479)
                      |++...
T Consensus       273 t~~~~~  278 (386)
T PF14583_consen  273 TGERRR  278 (386)
T ss_dssp             T--EEE
T ss_pred             CCCceE
Confidence            876543

>KOG4441|consensus

Probab=86.35  E-value=34  Score=35.40  Aligned_cols=132  Identities=16%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CCcEEEEEeCC------CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcccC
Q psy8895         230 GNEWFATGSAD------KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR-----TVKCWDLEYNKAPVQ  298 (479)
Q Consensus       230 ~g~~l~sgs~d------~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~  298 (479)
                      ++...++|+.|      .++..||..+.+....-.........-...-+|...+.||.||     ++..||.++.+....
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~v  411 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPV  411 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCccccc
Confidence            46788899988      3577888887764432121111111111122566778888885     577788876654322


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCC------eEEEEeCCCCC-----C------------CCCCeEEEEeCCC---
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADK------TVKLYKEDDSA-----T------------EESHPVITGSHDC---  352 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~-----~------------~~~~~l~sgs~d~---  352 (479)
                      ..........-.+  .-.+...++|+.++      ++..||+....     .            -...+.+.|+.|+   
T Consensus       412 a~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  412 APMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             CCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCc
Confidence            1111111111111  23456666776554      45556654431     0            1234456777765   


Q ss_pred             --cEEEEECCCCe
Q psy8895         353 --TIRLWDLAAGK  363 (479)
Q Consensus       353 --~v~iwd~~~~~  363 (479)
                        +|..||..+.+
T Consensus       490 ~~~VE~ydp~~~~  502 (571)
T KOG4441|consen  490 LSSVERYDPETNQ  502 (571)
T ss_pred             cceEEEEcCCCCc
Confidence              36667776643

>KOG3616|consensus

Probab=86.28  E-value=15  Score=38.00  Aligned_cols=67  Identities=15%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      ..++++.-+|.|+-+++++.||+|++++....+..+... ...+-..+.|...|  |++...|..+.-|.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence            346677778999999999999999999987654422221 11222334454444  55666677777775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=85.78  E-value=31  Score=32.37  Aligned_cols=122  Identities=15%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             EEEECC-CCceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEE-----eCC
Q psy8895         244 KVWDLA-TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTF-----DNS  316 (479)
Q Consensus       244 ~iWd~~-~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~-----~~~  316 (479)
                      .+|.+. .+.....+..+-..-+.++||||++.++.+. ..+.|.-|++.....       ........+.+     .|+
T Consensus       144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g-------~~~~~~~~~~~~~~~G~PD  216 (307)
T COG3386         144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG-------PIGGRRGFVDFDEEPGLPD  216 (307)
T ss_pred             eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC-------ccCCcceEEEccCCCCCCC
Confidence            455555 4566666665555567999999998777664 446777777642100       00011111111     112


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC-cEEEEECCCCeeEEEEccCCCceEEEEEeC-C-CcEEEEEc
Q psy8895         317 GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC-TIRLWDLAAGKSLCTLTNHKKSVRSVALHP-T-LYMFASAS  391 (479)
Q Consensus       317 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~-~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~-~~~l~s~s  391 (479)
                      |-.   ...+|.               +-+++-.+| .|..|+.. ++.+..++-+...+++++|-. + ..+++++.
T Consensus       217 G~~---vDadG~---------------lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         217 GMA---VDADGN---------------LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ceE---EeCCCC---------------EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence            111   111221               122333333 78888887 888888776666778888743 3 34444443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.70  E-value=28  Score=31.68  Aligned_cols=154  Identities=15%  Similarity=0.048  Sum_probs=81.4

Q ss_pred             cEEEEEEcCCCcEEEEEe--C-CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE-CCCCCcc
Q psy8895         221 WVRCVAVEPGNEWFATGS--A-DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD-LEYNKAP  296 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs--~-d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~  296 (479)
                      .+.+.+++++|+.++...  . ...+.++..... ....+.+.  .+..-.|++++...+....+...+++. ...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            577889999998877665  2 234445443322 22222322  556668889976665555555666663 2222211


Q ss_pred             -cCCCCCCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         297 -VQPGSMDSESGIFSMTFDNSGSRLITTEA---DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       297 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                       ...........|..+.++|+|.+++....   ++.+.+--            +.-..++.-+    ....++.......
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~------------V~r~~~g~~~----~l~~~~~~~~~~~  165 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAG------------VVRDGDGVPR----RLTGPRRVAPPLL  165 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEE------------EEeCCCCCcc----eeccceEeccccc
Confidence             11111111127999999999998876552   23332211            1111222000    0011122222234


Q ss_pred             CceEEEEEeCCCcEEEEEcCC
Q psy8895         373 KSVRSVALHPTLYMFASASPD  393 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d  393 (479)
                      ..+++++|.++..+++.+...
T Consensus       166 ~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             CcceeeeecCCCEEEEEeCCC
Confidence            578999999999887776544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=85.35  E-value=28  Score=36.08  Aligned_cols=67  Identities=15%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEc--CCCCEEEEEECCCcEEEEE
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVS--PRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~--~~~~~l~s~~~d~~i~~wd  289 (479)
                      .-+.-++-++..+.-+....+.|||.+.+.....-. ...+.|.++.|.  |++..+++.|..+.|.++-
T Consensus        33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~  102 (631)
T PF12234_consen   33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYT  102 (631)
T ss_pred             ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEE
Confidence            334444445555554445689999999887543221 346789999874  6889999999999999984

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA02790 Kelch-like protein; Provisional

Probab=85.06  E-value=46  Score=33.64  Aligned_cols=63  Identities=8%  Similarity=-0.026  Sum_probs=33.3

Q ss_pred             CCcEEEEEeCCC-----eEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC--CcEEEEECCCC
Q psy8895         230 GNEWFATGSADK-----IIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD--RTVKCWDLEYN  293 (479)
Q Consensus       230 ~g~~l~sgs~d~-----~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d--~~i~~wd~~~~  293 (479)
                      ++..++.|+.++     .+..||..+++....-....... .+++ .-++...+.||.+  .++..||..++
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n  341 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDA  341 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCC
Confidence            456677777643     56678887765432211111111 1222 2356666677653  45777887544

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.01  E-value=48  Score=34.88  Aligned_cols=70  Identities=14%  Similarity=0.210  Sum_probs=47.5

Q ss_pred             CCceEEEEEe--CCCcEEEEEcCCc-EEEEeCCC--CeEEee-ecCCcceEEEEEEcC-----CC--EEEEEeCCCcEEE
Q psy8895         372 KKSVRSVALH--PTLYMFASASPDN-IKQWKCPE--GKFIQN-LPGHNAIINSICVNN-----EG--VLVSGADNGTMCF  438 (479)
Q Consensus       372 ~~~v~~i~~~--~~~~~l~s~s~d~-i~~w~~~~--~~~~~~-~~~h~~~v~~l~~~~-----~~--~l~sg~~dg~i~l  438 (479)
                      ..+++.++++  ....++|.+++.. |.++-...  .+.... -..|..-|.+++|-+     +|  .+++++-.|.+.+
T Consensus       163 ~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~  242 (717)
T PF08728_consen  163 GASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT  242 (717)
T ss_pred             CCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence            3578999998  7788888888774 77665433  121111 112455688888853     23  6888999999999


Q ss_pred             Eec
Q psy8895         439 WDW  441 (479)
Q Consensus       439 Wd~  441 (479)
                      |++
T Consensus       243 ~~I  245 (717)
T PF08728_consen  243 FKI  245 (717)
T ss_pred             EEE
Confidence            888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=84.77  E-value=9.3  Score=37.39  Aligned_cols=52  Identities=12%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV  261 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~  261 (479)
                      .....+......+.++..+|.+.+.|....-|.|.++|+.++..+..++|..
T Consensus       298 ~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR  349 (415)
T PF14655_consen  298 PMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR  349 (415)
T ss_pred             ceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence            3444566777889999999999999988778999999999987776666543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.36  E-value=8.3  Score=34.20  Aligned_cols=57  Identities=12%  Similarity=0.217  Sum_probs=34.8

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEE-------c-------cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCC
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTL-------T-------NHKKSVRSVALHPTLYMFASASPDNIKQWKCP  401 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~-------~-------~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~  401 (479)
                      ++.-..+|.+++||+.+++.+...       .       .....|..+.++.+|..+++-+++....|+..
T Consensus        25 Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~   95 (219)
T PF07569_consen   25 LLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD   95 (219)
T ss_pred             EEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence            344445556666666555432211       1       24456888888888888887777777777654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PHA02713 hypothetical protein; Provisional

Probab=82.07  E-value=22  Score=36.70  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=17.2

Q ss_pred             CCcEEEEEeCCC-----eEEEEECCCCce
Q psy8895         230 GNEWFATGSADK-----IIKVWDLATGKL  253 (479)
Q Consensus       230 ~g~~l~sgs~d~-----~i~iWd~~~~~~  253 (479)
                      +|+..+.||.++     ++..||..+.+.
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W  379 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKW  379 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence            567777787654     478899887654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=81.60  E-value=40  Score=30.38  Aligned_cols=151  Identities=16%  Similarity=0.138  Sum_probs=73.7

Q ss_pred             EEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-C--CcEEEEECCCC--Cccc--CCCCCCCCCCeEEEEEeCC
Q psy8895         244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-D--RTVKCWDLEYN--KAPV--QPGSMDSESGIFSMTFDNS  316 (479)
Q Consensus       244 ~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d--~~i~~wd~~~~--~~~~--~~~~~~~~~~i~~~~~~~~  316 (479)
                      .+||+.+++....-......+.+-++-+||+++.+||. |  ..+++++....  .+..  ....+...........-++
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D  128 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD  128 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence            47888887654322222333444457789999998864 2  46888876430  1110  0111222223334555677


Q ss_pred             CCEEEEEeCCCe-EEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcE
Q psy8895         317 GSRLITTEADKT-VKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI  395 (479)
Q Consensus       317 ~~~l~~~~~d~~-i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i  395 (479)
                      |+.++.|+.... ...|.....             .....-|...... .....  ...=..+...|++++|..+..+ -
T Consensus       129 G~vlIvGG~~~~t~E~~P~~~~-------------~~~~~~~~~l~~~-~~~~~--~nlYP~~~llPdG~lFi~an~~-s  191 (243)
T PF07250_consen  129 GRVLIVGGSNNPTYEFWPPKGP-------------GPGPVTLPFLSQT-SDTLP--NNLYPFVHLLPDGNLFIFANRG-S  191 (243)
T ss_pred             CCEEEEeCcCCCcccccCCccC-------------CCCceeeecchhh-hccCc--cccCceEEEcCCCCEEEEEcCC-c
Confidence            777777665521 111111000             0000000000000 00000  1111245667999999888766 4


Q ss_pred             EEEeCCCCeEEeeecC
Q psy8895         396 KQWKCPEGKFIQNLPG  411 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~  411 (479)
                      .++|..+.+.++.++.
T Consensus       192 ~i~d~~~n~v~~~lP~  207 (243)
T PF07250_consen  192 IIYDYKTNTVVRTLPD  207 (243)
T ss_pred             EEEeCCCCeEEeeCCC
Confidence            5668888877666654

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.44  E-value=26  Score=28.10  Aligned_cols=117  Identities=12%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE---Ee--CCCc
Q psy8895         311 MTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA---LH--PTLY  385 (479)
Q Consensus       311 ~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~---~~--~~~~  385 (479)
                      -.|+.....|+.++..++|.++++........      ..+..+++.++.            ..|++++   +.  .+..
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~------~~~~~i~~LNin------------~~italaaG~l~~~~~~D   65 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTG------RQDSDISFLNIN------------QEITALAAGRLKPDDGRD   65 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccc------cccCceeEEECC------------CceEEEEEEecCCCCCcC
Confidence            45666667788888888888888665432211      145556655554            2344443   32  2467


Q ss_pred             EEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEE---cC-CCEEEEEeCCCcEEEEecCCCeE
Q psy8895         386 MFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV---NN-EGVLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       386 ~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~---~~-~~~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      .|..++...+..||+.+..-+..-.- ++.|+++.+   .. +.-|+-.+-+..|.=+|.+-.+.
T Consensus        66 ~LliGt~t~llaYDV~~N~d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~  129 (136)
T PF14781_consen   66 CLLIGTQTSLLAYDVENNSDLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI  129 (136)
T ss_pred             EEEEeccceEEEEEcccCchhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence            88889999999999976654432222 245666654   22 22333344456777777654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-27
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-19
2h9l_A	329	Wdr5delta23 Length = 329		3e-19
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		5e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		5e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		5e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		7e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-18
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-18
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		6e-14
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-11
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		3e-16
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		2e-13
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		2e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-13
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		4e-13
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		7e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-13
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-12
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-11
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-11
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-11
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-11
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-11
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-11
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		5e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		1e-10
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-10
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-10
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-09
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-08
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		1e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		2e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		2e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		2e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		2e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		2e-07
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		1e-07
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		1e-07
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-07
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		3e-07
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		4e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		6e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-05
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		6e-06
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		2e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-05
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		4e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		7e-05
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		7e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-04
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		2e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		5e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  119 bits (299), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 215/525 (40%), Gaps = 107/525 (20%)
Query: 7   GKLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISL 41
           G+L  +LTGH  SV G+                          +++   GH SSV  ++ 
Sbjct: 47  GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF 106
Query: 42  HPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCE 101
            P    + +A  D T ++W+ R    + TLTGH++++  V   A  P    +T+   S +
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGV---AFSPD--GQTIASASDD 160
Query: 102 RIMFVLGTAGFLLSCL-------------------PSLLDFGTIRPWQLQIIQEQCFLNL 142
           + + +    G LL  L                    S  D  T++ W           N 
Sbjct: 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR---------NG 211
Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPM-- 200
           Q +Q  + H+   R +  + D     Q +  +++++ V     N Q++Q     +  +  
Sbjct: 212 QLLQTLTGHSSSVRGVAFSPD----GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNG 267
Query: 201 ----PKPQ-------------WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKII 243
               P  Q             W+   +L + ++GH   V  VA  P  +  A+ S DK +
Sbjct: 268 VAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 244 KVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD 303
           K+W+   G+   +LTGH  SV G+  SP    + S  DD+TVK W+          G   
Sbjct: 328 KLWNR-NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 386
Query: 304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------ESHPVIT 347
           S  G+    F   G  + +   DKTVKL+  +    +                +   + +
Sbjct: 387 SVRGV---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI 406
            S D T++LW+   G+ L TLT H  SVR VA  P     ASAS D  +K W    G+ +
Sbjct: 444 ASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLL 501
Query: 407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL 450
           Q L GH++ +  +  + +G  + S +D+ T+  W+ R G   Q L
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTL 545

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 33/304 (10%)
Query: 174 STENQLVPTTASNTQIIQQAKA-KALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGN 231
           +TE +   T A+  Q    + A ++ P P KP +     L   ++GH   V  V   P  
Sbjct: 2   ATEEKKPETEAARAQPTPSSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNG 57
Query: 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
           EW A+ SADK+IK+W    GK + +++GH   +  +  S     L S  DD+T+K WD+ 
Sbjct: 58  EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 117
Query: 292 YNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP------ 344
             K      ++   S  +F   F+   + +++   D++V+++        ++ P      
Sbjct: 118 SGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 174
Query: 345 -----------VITGSHDCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASAS 391
                      +++ S+D   R+WD A+G+ L TL +     V  V   P   Y+ A+  
Sbjct: 175 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 234
Query: 392 PDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
            + +K W   +GK ++   GH      I  +  V     +VSG+++  +  W+ +T    
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 448 QRLQ 451
           Q+LQ
Sbjct: 295 QKLQ 298

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 137/304 (45%), Gaps = 33/304 (10%)
Query: 174 STENQLVPTTASNTQIIQQAKA-KALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGN 231
           +TE +   T A+  Q    + A ++ P P KP +     L   ++GH   V  V   P  
Sbjct: 4   ATEEKKPETEAARAQPTPSSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNG 59
Query: 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
           EW A+ SADK+IK+W    GK + +++GH   +  +  S     L S  DD+T+K WD+ 
Sbjct: 60  EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS 119
Query: 292 YNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP------ 344
             K      ++   S  +F   F+   + +++   D++V+++        ++ P      
Sbjct: 120 SGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV 176
Query: 345 -----------VITGSHDCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASAS 391
                      +++ S+D   R+WD A+G+ L TL +     V  V   P   Y+ A+  
Sbjct: 177 SAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL 236
Query: 392 PDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF 447
            + +K W   +GK ++   GH      I  +  V     +VSG+++  +  W+ +T    
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 448 QRLQ 451
           Q+LQ
Sbjct: 297 QKLQ 300

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 126/278 (45%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 9   PTPVKPNY----ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 121
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   +++K W   +GK ++   GH     
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 32/286 (11%)
Query: 190 IQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA 249
            Q  ++K  P+ KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W   
Sbjct: 16  FQGTQSKPTPV-KPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY 70
Query: 250 TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-I 308
            GK + +++GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +
Sbjct: 71  DGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYV 127
Query: 309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHD 351
           F   F+   + +++   D++V+++        ++ P                 +++ S+D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 352 CTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNL 409
              R+WD A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++  
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 410 PGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            GH      I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 9   PTPVKPNY----ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 65  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 121
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 181
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 182 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 241
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 242 CIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 6   PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 62  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 118
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 2   PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 58  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 114
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 115 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 234
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 235 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 11  PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 66
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 67  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 123
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 124 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 183
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 184 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 243
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 244 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 129/287 (44%), Gaps = 32/287 (11%)
Query: 190 IQQAKAKALPMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDL 248
           +  +  ++ P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W  
Sbjct: 3   LGSSATQSKPTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGA 58
Query: 249 ATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG- 307
             GK + +++GH   +  +  S     L S  DD+T+K WD+   K      ++   S  
Sbjct: 59  YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNY 115
Query: 308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSH 350
           +F   F+   + +++   D++V+++        ++ P                 +++ S+
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY 175
Query: 351 DCTIRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQN 408
           D   R+WD A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++ 
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Query: 409 LPGHN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
             GH      I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 236 YTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 7   PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 63  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 119
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 120 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 179
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 180 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 239
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 240 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 6   PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 62  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 118
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 119 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 178
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 179 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 238
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 239 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 125/278 (44%), Gaps = 32/278 (11%)
Query: 199 PMP-KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL 257
           P P KP +     L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + ++
Sbjct: 12  PTPVKPNY----ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNS 316
           +GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F   F+  
Sbjct: 68  SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQ 124
Query: 317 GSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDL 359
            + +++   D++V+++        ++ P                 +++ S+D   R+WD 
Sbjct: 125 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 184
Query: 360 AAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN---- 413
           A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   GH     
Sbjct: 185 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY 244
Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 245 CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 127/284 (44%), Gaps = 34/284 (11%)
Query: 199 PMPKPQWHAP-------WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG 251
           P+  P++ +        + L   ++GH   V  V   P  EW A+ SADK+IK+W    G
Sbjct: 2   PLGSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG 61
Query: 252 KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFS 310
           K + +++GH   +  +  S     L S  DD+T+K WD+   K      ++   S  +F 
Sbjct: 62  KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFC 118
Query: 311 MTFDNSGSRLITTEADKTVKLYKEDDSATEESHP-----------------VITGSHDCT 353
             F+   + +++   D++V+++        ++ P                 +++ S+D  
Sbjct: 119 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 178
Query: 354 IRLWDLAAGKSLCTLTNHKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPG 411
            R+WD A+G+ L TL +     V  V   P   Y+ A+   + +K W   +GK ++   G
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG 238
Query: 412 HN----AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
           H      I  +  V     +VSG+++  +  W+ +T    Q+LQ
Sbjct: 239 HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           + L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + +++GH   +  + 
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
            S     L S  DD+T+K WD+   K      ++   S  +F   F+   + +++   D+
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
           +V+++        ++ P                 +++ S+D   R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
                V  V   P   Y+ A+   + +K W   +GK ++   GH      I  +  V   
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
             +VSG+++  +  W+ +T    Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           + L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + +++GH   +  + 
Sbjct: 12  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 71
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
            S     L S  DD+T+K WD+   K      ++   S  +F   F+   + +++   D+
Sbjct: 72  WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
           +V+++        ++ P                 +++ S+D   R+WD A+G+ L TL +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
                V  V   P   Y+ A+   + +K W   +GK ++   GH      I  +  V   
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 248
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
             +VSG+++  +  W+ +T    Q+LQ
Sbjct: 249 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 275

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 92.0 bits (227), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 121/267 (45%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           + L   ++GH   V  V   P  EW A+ SADK+IK+W    GK + +++GH   +  + 
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
            S     L S  DD+T+K WD+   K      ++   S  +F   F+   + +++   D+
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
           +V+++        ++ P                 +++ S+D   R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
                V  V   P   Y+ A+   + +K W   +GK ++   GH      I  +  V   
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
             +VSG+++  +  W+ +T    Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 27/267 (10%)
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           + L   ++GH   V  V   P  EW A  SADK+IK+W    GK + +++GH   +  + 
Sbjct: 16  YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVA 75
Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGSRLITTEADK 327
            S     L S  DD+T+K WD+   K      ++   S  +F   F+   + +++   D+
Sbjct: 76  WSSDSNLLVSASDDKTLKIWDVSSGKC---LKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 328 TVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTN 370
           +V+++        ++ P                 +++ S+D   R+WD A+G+ L TL +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 371 HKK-SVRSVALHPT-LYMFASASPDNIKQWKCPEGKFIQNLPGHN----AIINSICVNNE 424
                V  V   P   Y+ A+   + +K W   +GK ++   GH      I  +  V   
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG 252
Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQ 451
             +VSG+++  +  W+ +T    Q+LQ
Sbjct: 253 KWIVSGSEDNLVYIWNLQTKEIVQKLQ 279

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 136/360 (37%), Gaps = 112/360 (31%)
Query: 1   VWDLATGKLKLSLTGHVGSVR--------------------------GLTVIRHYHGHLS 34
           VWD  TG  + +L GH  SV+                          G   IR  HGH  
Sbjct: 134 VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 193
Query: 35  SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKT 94
           +V+++S+ P  D +++A RD T ++W+V+T   V T TGH   +  V       Q GT  
Sbjct: 194 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN----QDGT-- 247
Query: 95  VLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLV 154
            L+ SC                     +  T+R W   +  ++C   L+E          
Sbjct: 248 -LIASCS--------------------NDQTVRVW--VVATKECKAELRE---------- 274
Query: 155 FRSLKRTHDMFISCQELVP-STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYR 213
                  H   + C    P S+ + +   T S T      K    P P            
Sbjct: 275 -------HRHVVECISWAPESSYSSISEATGSET------KKSGKPGP------------ 309
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
                              +  +GS DK IK+WD++TG   ++L GH   VRG+      
Sbjct: 310 -------------------FLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
            ++ SC DD+T++ WD  Y            E  + S+ F  +   ++T   D+TVK+++
Sbjct: 351 KFILSCADDKTLRVWD--YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 104/232 (44%), Gaps = 9/232 (3%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
           R + GH   V  V++ P  +   + S DK IK+W++ TG    + TGH   VR +  +  
Sbjct: 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY 332
              + SC +D+TV+ W +   +   +           S   ++S S +      +T K  
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-- 303
Query: 333 KEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASAS 391
                + +    +++GS D TI++WD++ G  L TL  H   VR V  H    ++ + A 
Sbjct: 304 -----SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD 358
Query: 392 PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR 442
              ++ W     + ++ L  H   + S+  +     +V+G+ + T+  W+ R
Sbjct: 359 DKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 36/217 (16%)
Query: 254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSESGIFSMT 312
           K +L+GH   V  +   P    + S  +D T+K WD E         G  DS   +  ++
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS---VQDIS 157
Query: 313 FDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
           FD+SG  L +  A                         D TI+LWD    + + T+  H 
Sbjct: 158 FDHSGKLLASCSA-------------------------DMTIKLWDFQGFECIRTMHGHD 192
Query: 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA 431
            +V SV++ P      SAS D  IK W+   G  ++   GH   +  +  N +G L++  
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 252
Query: 432 DNG-TMCFW-----DWRTGYNFQRLQVRCVSGFPKPS 462
            N  T+  W     + +      R  V C+S  P+ S
Sbjct: 253 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESS 289

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 123/258 (47%), Gaps = 26/258 (10%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
           K  R + GH G V   + +  +    +GS D+ +KVW+  TG+   +L GH  +VR + +
Sbjct: 150 KCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 207
Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
             +   + S   D T++ WD+E  +       M   + +  + +D  G R+++   D  V
Sbjct: 208 HEKR--VVSGSRDATLRVWDIETGQCL--HVLMGHVAAVRCVQYD--GRRVVSGAYDFMV 261
Query: 330 KLYKEDDSA---TEESHP------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374
           K++  +      T + H             V++GS D +IR+WD+  G  + TLT H+  
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSI-CVN-NEGVLVSGAD 432
              + L   + +  +A    +K W    G+ +Q L G N   +++ C+  N+  +++ +D
Sbjct: 322 TSGMELKDNILVSGNADS-TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 380
Query: 433 NGTMCFWDWRTGYNFQRL 450
           +GT+  WD +TG   + L
Sbjct: 381 DGTVKLWDLKTGEFIRNL 398

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           W   GS D  I+V++  TG+  +    H   +R + V P  PY+ S  DD TVK W+ E 
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
           N A ++      E  +  + F+    S   +   D+TVK++    S              
Sbjct: 129 NWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
              + +P      +IT S D TI++WD      + TL  H  +V     HPTL +  S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
            D  +K W     K  + L  +  +  S C+       +  + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           W   GS D  I+V++  TG+  +    H   +R + V P  PY+ S  DD TVK W+ E 
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
           N A ++      E  +  + F+    S   +   D+TVK++    S              
Sbjct: 129 NWA-LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
              + +P      +IT S D TI++WD      + TL  H  +V     HPTL +  S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PD-NIKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
            D  +K W     K  + L  +  +  S C+       +  + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 115/291 (39%), Gaps = 61/291 (20%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-------------- 263
           H   V CV      E+ ATG  +K  +V+ ++ G L   L+    +              
Sbjct: 63  HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 121
Query: 264 ----VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK-APVQPGSMDSESGIFSMTFDNSGS 318
               +R +  SP   +L +  +DR ++ WD+E  K   +  G    E  I+S+ +  SG 
Sbjct: 122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH---EQDIYSLDYFPSGD 178
Query: 319 RLITTEADKTVKLYK------------EDDSATEESHP-----VITGSHDCTIRLWDLAA 361
           +L++   D+TV+++             ED   T    P     +  GS D  +R+WD   
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 362 GKSLCTL-------TNHKKSVRSVALHPTLYMFASASPD-NIKQW-----------KCPE 402
           G  +  L       T HK SV SV          S S D ++K W           K P 
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 403 -GKFIQNLPGHNAIINSICV-NNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
            G       GH   + S+    N+  ++SG+ +  + FWD ++G     LQ
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           W   GS D  I+V++  TG+  +    H   +R + V P  PY+ S  DD TVK W+ E 
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSATE----------- 340
           N A  Q      E  +  + F+    S   +   D+TVK++    S              
Sbjct: 129 NWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 341 ---ESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
              + +P      +IT S D TI++WD      + TL  H  +V     HPTL +  S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PDN-IKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
            D  +K W     K  + L  +  +  S C+       +  + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 96/229 (41%), Gaps = 30/229 (13%)
Query: 233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
           W   GS D  I+V++  TG+  +    H   +R + V P  PY+ S  DD TVK W+ E 
Sbjct: 69  WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 293 NKAPVQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLY--------------KEDDS 337
           N A  Q      E  +  + F+    S   +   D+TVK++              +E   
Sbjct: 129 NWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 338 ATEESHP------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
              + +P      +IT S D TI++WD      + TL  H  +V     HPTL +  S S
Sbjct: 188 NYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGS 247
Query: 392 PDN-IKQWKCPEGKFIQNLPGHNAIINSICV-----NNEGVLVSGADNG 434
            D  +K W     K  + L  +  +  S C+       +  + SG DNG
Sbjct: 248 EDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNG 294

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 29/252 (11%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
           R+++GH G V C+  +       TGS+D  ++VWD+ TG++  +L  H  +V  L  +  
Sbjct: 167 RILTGHTGSVLCLQYD--ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-- 222
Query: 273 HPYLFSCGDDRTVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDN------SGSRLI---- 321
           +  + +C  DR++  WD+       ++   +   + +  + FD+      SG R I    
Sbjct: 223 NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWN 282
Query: 322 --TTEADKTVKLYKEDDSATE-ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378
             T E  +T+  +K   +  +     V++GS D TIRLWD+  G  L  L  H++ VR +
Sbjct: 283 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 379 ALHPTLYMFASASPDNIKQW--------KCPEGKF-IQNLPGHNAIINSICVNNEGVLVS 429
                  + + A    IK W        + P G   ++ L  H+  +  +   +E  +VS
Sbjct: 343 RFDNK-RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVS 400
Query: 430 GADNGTMCFWDW 441
            + + T+  WD+
Sbjct: 401 SSHDDTILIWDF 412

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 90/215 (41%), Gaps = 65/215 (30%)
Query: 303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE---------------ESHPVIT 347
           ++  G++ + +D+   ++++   D T+K++ ++    +               +   +IT
Sbjct: 131 ETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIIT 188
Query: 348 GSHDCTIRLWDLAAGKSLCTLTNHKKSV----------------RSVAL----HPT---- 383
           GS D T+R+WD+  G+ L TL +H ++V                RS+A+     PT    
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL 248
Query: 384 ------------------LYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG 425
                              Y+ +++    IK W     +F++ L GH   I  +   +  
Sbjct: 249 RRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR- 307
Query: 426 VLVSGADNGTMCFWDWRTGYNFQRLQ-----VRCV 455
           ++VSG+ + T+  WD   G   + L+     VRC+
Sbjct: 308 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 112/266 (42%), Gaps = 44/266 (16%)
Query: 215 ISGHL-GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
           + GH+   + C+  E  + +  TG+ DK+I+V+D    K  L L+GH G V  L  +   
Sbjct: 117 LRGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA-HG 173
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV---K 330
             L S   DRTV+ WD++           +S      +    +   ++T   D T+   K
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 331 LYKED---DSATEESHP--------------------------------VITGSHDCTIR 355
           L KE    D   E  +P                                V++GS+D T+ 
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA 414
           +WD+A  K L  L+ H   + S           SAS D  I+ W    G+ +  L GH A
Sbjct: 294 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 415 IINSICVNNEGVLVSGADNGTMCFWD 440
           ++  + ++++  LVS A +G++  WD
Sbjct: 354 LVGLLRLSDK-FLVSAAADGSIRGWD 378

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 174/454 (38%), Gaps = 75/454 (16%)
Query: 31   GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIAS---------V 81
            GH +SVN     P  ++L +   D T R+WDVR+     ++      ++S         +
Sbjct: 748  GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 807
Query: 82   VTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP---SLLDFGTIRPW-QLQII--Q 135
            V   S    G K ++    + ++F + T+G L        S + +    P+  L +I   
Sbjct: 808  VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 136  EQCF--------LNLQEVQRHS--VHTLVFRS-----LKRTHDMFISCQELVPSTENQLV 180
            + C         L + + + H   VH ++F       L  + D  I   E     +N  +
Sbjct: 868  QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 927
Query: 181  PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW--------VRCVAVEPGNE 232
                    + Q+ +   L +         +  ++I+G  G         V C  + P  E
Sbjct: 928  VLKQEIDVVFQENETMVLAVDNI------RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 981
Query: 233  WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
            + A G  D  IK+ +L   ++  S  GH  +VR +  +     L S  +D  ++ W+ + 
Sbjct: 982  YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ- 1040
Query: 293  NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC 352
                                   +G  +      +TVK     D    +   +++ S D 
Sbjct: 1041 -----------------------TGDYVFLQAHQETVK-----DFRLLQDSRLLSWSFDG 1072
Query: 353  TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-KQWKCPEGKFIQNLPG 411
            T+++W++  G+     T H+ +V S A+      F+S S D   K W       +  L G
Sbjct: 1073 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1132
Query: 412  HNAIINSICVNNEGVLVS-GADNGTMCFWDWRTG 444
            HN  +     + +G+L++ G DNG +  W+   G
Sbjct: 1133 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1166

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
           V+  H   V         +  A+  ADK ++V+   TG+  L +  H   V     S   
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 676
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
            Y+ +C  D+ VK W              DS +G    T+D    ++             
Sbjct: 677 SYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHF-------- 714
Query: 334 EDDSATEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP 392
                 + +H ++ TGS+D  ++LWDL   +   T+  H  SV      P   + AS S 
Sbjct: 715 ----TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 770
Query: 393 D 393
           D
Sbjct: 771 D 771

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 174/454 (38%), Gaps = 75/454 (16%)
Query: 31   GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIAS---------V 81
            GH +SVN     P  ++L +   D T R+WDVR+     ++      ++S         +
Sbjct: 741  GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVI 800
Query: 82   VTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP---SLLDFGTIRPW-QLQII--Q 135
            V   S    G K ++    + ++F + T+G L        S + +    P+  L +I   
Sbjct: 801  VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 136  EQCF--------LNLQEVQRHS--VHTLVFRS-----LKRTHDMFISCQELVPSTENQLV 180
            + C         L + + + H   VH ++F       L  + D  I   E     +N  +
Sbjct: 861  QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAI 920
Query: 181  PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW--------VRCVAVEPGNE 232
                    + Q+ +   L +         +  ++I+G  G         V C  + P  E
Sbjct: 921  VLKQEIDVVFQENETMVLAVDNI------RGLQLIAGKTGQIDYLPEAQVSCCCLSPHLE 974
Query: 233  WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
            + A G  D  IK+ +L   ++  S  GH  +VR +  +     L S  +D  ++ W+ + 
Sbjct: 975  YVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ- 1033
Query: 293  NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC 352
                                   +G  +      +TVK     D    +   +++ S D 
Sbjct: 1034 -----------------------TGDYVFLQAHQETVK-----DFRLLQDSRLLSWSFDG 1065
Query: 353  TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-KQWKCPEGKFIQNLPG 411
            T+++W++  G+     T H+ +V S A+      F+S S D   K W       +  L G
Sbjct: 1066 TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKG 1125
Query: 412  HNAIINSICVNNEGVLVS-GADNGTMCFWDWRTG 444
            HN  +     + +G+L++ G DNG +  W+   G
Sbjct: 1126 HNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDG 1159

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 27/181 (14%)
Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
           V+  H   V         +  A+  ADK ++V+   TG+  L +  H   V     S   
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD 669
Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
            Y+ +C  D+ VK W              DS +G    T+D    ++             
Sbjct: 670 SYIATCSADKKVKIW--------------DSATGKLVHTYDEHSEQVNCCHF-------- 707
Query: 334 EDDSATEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP 392
                 + +H ++ TGS+D  ++LWDL   +   T+  H  SV      P   + AS S 
Sbjct: 708 ----TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 393 D 393
           D
Sbjct: 764 D 764

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 43/258 (16%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
           + C+  E  + +  TG+ DK I+V+D    K  L L+GH G V  L  +     L S   
Sbjct: 125 ITCLQFE--DNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA-HGGILVSGST 181
Query: 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV---KLYKED--- 335
           DRTV+ WD++           +S      +    +   ++T   D T+   KL KE    
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 336 DSATEESHP--------------------------------VITGSHDCTIRLWDLAAGK 363
           D   E  +P                                V++GS+D T+ +WD+A  K
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXK 301
Query: 364 SLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVN 422
            L  L+ H   + S           SAS D  I+ W    G+    L GH A++  + ++
Sbjct: 302 CLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS 361
Query: 423 NEGVLVSGADNGTMCFWD 440
           ++  LVS A +G++  WD
Sbjct: 362 DK-FLVSAAADGSIRGWD 378

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 3   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S +++ +
Sbjct: 63  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 108
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK   +             +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 109 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 154
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 155 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 214
Query: 437 CFWD 440
             W+
Sbjct: 215 MLWN 218

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S +++ +
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK   +             +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
             W+
Sbjct: 221 MLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S +++ +
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK   +             +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
             W+
Sbjct: 221 MLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S +++ +
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK   +             +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
             W+
Sbjct: 221 MLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S +++ +
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVMSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK   +             +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 115 IDKKASM-------------IISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
             W+
Sbjct: 221 MLWN 224

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 114/266 (42%), Gaps = 35/266 (13%)
Query: 181 PTTASNTQIIQQAKAKALPM--PKPQWHAPWKLY----RVISGHLGWVRCVAVEPGNEWF 234
           P TA  T+++  ++ K L    P P  H+    Y    R + GH  +V  VA+     + 
Sbjct: 25  PETA--TKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFA 82
Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294
            + S D  +++W+L  G+ +    GH   V  +  SP +  + S G D  ++ W+++   
Sbjct: 83  VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK--- 139
Query: 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI 354
                       G    T     SR   T+    V+      S + ++  +++G  D  +
Sbjct: 140 ------------GECMHTL----SRGAHTDWVSCVRF-----SPSLDAPVIVSGGWDNLV 178
Query: 355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHN 413
           ++WDLA G+ +  L  H   V SV + P   + AS+  D + + W   +G+ +  +    
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-G 237
Query: 414 AIINSICVN-NEGVLVSGADNGTMCF 438
           A IN IC + N   + +  + G   F
Sbjct: 238 APINQICFSPNRYWMCAATEKGIRIF 263

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 42/244 (17%)
Query: 211 LYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSV 264
           L   + GH GWV  +A   G      + S DK +  W L     K      S  GH   V
Sbjct: 9   LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +  T++    Y  S   D+T++ WD+               +G     F    S + + +
Sbjct: 69  QDCTLTADGAYALSASWDKTLRLWDVA--------------TGETYQRFVGHKSDVXSVD 114
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-- 382
            DK             ++  +I+GS D TI++W +  G+ L TL  H   V  V + P  
Sbjct: 115 IDK-------------KASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNE 160
Query: 383 -----TLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA-DNGTM 436
                ++ + ++ +   +K W   + +   +  GHN+ IN++  + +G L++ A  +G +
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 437 CFWD 440
             W+
Sbjct: 221 XLWN 224

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 108/279 (38%), Gaps = 28/279 (10%)
Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
           Q      +  R   + H+ +++     P   + ++  +   T I+ +          PQ 
Sbjct: 21  QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ- 79
Query: 206 HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
                  R + GH  +V  V +    ++  +GS D  +++WDL TG       GH   V 
Sbjct: 80  -------RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL 132
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
            +  S  +  + S   D+T+K W+ L   K  VQ  S          + ++S   +++  
Sbjct: 133 SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG 192
Query: 325 ADKTVKLYKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCT 367
            DK VK++   +   + +H                    +G  D    LWDL  GK L T
Sbjct: 193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252
Query: 368 LTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFI 406
           L +    + ++   P  Y   +A+  +IK W   EGK I
Sbjct: 253 L-DGGDIINALCFSPNRYWLCAATGPSIKIWDL-EGKII 289

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 211 LYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSV 264
           L   + GH GWV  +A  P   +   + S DK I +W L       G  + +L GH   V
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
             + +S    +  S   D T++ WDL       +   +     + S+ F +   ++++  
Sbjct: 90  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDNRQIVSGS 147
Query: 325 ADKTVKLYK---------EDDSATE----------ESHPVITG-SHDCTIRLWDLAAGKS 364
            DKT+KL+          +D+S +E           S+P+I     D  +++W+LA  K 
Sbjct: 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 207
Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHNAIINSICVNN 423
                 H   + +V + P   + AS   D     W   EGK +  L G + IIN++C + 
Sbjct: 208 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP 266
Query: 424 EGVLVSGADNGTMCFWD 440
               +  A   ++  WD
Sbjct: 267 NRYWLCAATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 107/272 (39%), Gaps = 28/272 (10%)
Query: 153 LVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLY 212
           +  R   + H+ +++     P   + ++  +   T I+ +          PQ        
Sbjct: 5   MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ-------- 56
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
           R + GH  +V  V +    ++  +GS D  +++WDL TG       GH   V  +  S  
Sbjct: 57  RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 273 HPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKL 331
           +  + S   D+T+K W+ L   K  VQ  S          + ++S   +++   DK VK+
Sbjct: 117 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 176
Query: 332 YKEDDSATEESHP-----------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374
           +   +   + +H                    +G  D    LWDL  GK L TL +    
Sbjct: 177 WNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-DGGDI 235
Query: 375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFI 406
           + ++   P  Y   +A+  +IK W   EGK I
Sbjct: 236 INALCFSPNRYWLCAATGPSIKIWDL-EGKII 266

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 211 LYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSV 264
           L   + GH GWV  +A  P   +   + S DK I +W L       G  + +L GH   V
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
             + +S    +  S   D T++ WDL       +   +     + S+ F +   ++++  
Sbjct: 67  SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--FVGHTKDVLSVAFSSDNRQIVSGS 124
Query: 325 ADKTVKLYK---------EDDSATE----------ESHPVITG-SHDCTIRLWDLAAGKS 364
            DKT+KL+          +D+S +E           S+P+I     D  +++W+LA  K 
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQ-WKCPEGKFIQNLPGHNAIINSICVNN 423
                 H   + +V + P   + AS   D     W   EGK +  L G + IIN++C + 
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSP 243
Query: 424 EGVLVSGADNGTMCFWD 440
               +  A   ++  WD
Sbjct: 244 NRYWLCAATGPSIKIWD 260

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 100/242 (41%), Gaps = 26/242 (10%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
           R ++GH  +V  V +    ++  +GS D  +++WDLA G       GH   V  +  S  
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 273 HPYLFSCGDDRTVKCWD-LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKL 331
           +  + S   DRT+K W+ L   K  +  G       +  + F                  
Sbjct: 484 NRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRF------------------ 525
Query: 332 YKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS 391
                S       +++ S D T+++W+L+  K   TL  H   V +VA+ P   + AS  
Sbjct: 526 -----SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580
Query: 392 PDNIK-QWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL 450
            D +   W   EGK + +L   N++I+++C +     +  A    +  WD  +    + L
Sbjct: 581 KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDL 639
Query: 451 QV 452
           +V
Sbjct: 640 KV 641

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 83/207 (40%), Gaps = 26/207 (12%)
Query: 228 EPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285
           +  +E   TGS D ++KVW     +L L  SL GH   V  + +S   P   S   D  +
Sbjct: 45  KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHI 104
Query: 286 KCWDLEYNK--APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES- 342
           + WDLE  K    +  G +D+    +++ F      L T      V ++  +    E S 
Sbjct: 105 RLWDLENGKQIKSIDAGPVDA----WTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160
Query: 343 ----------------HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYM 386
                             + +G+ D  I ++D+A GK L TL  H   +RS+   P   +
Sbjct: 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220
Query: 387 FASASPDN-IKQWKCPEGKFIQNLPGH 412
             +AS D  IK +          L GH
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGH 247

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 40/251 (15%)
Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPR 272
           R + GH G V  +   P   W  + S D  + VW+  T +   ++  H            
Sbjct: 60  RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC----------- 108
Query: 273 HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMT--FDNSG----SRLITTEAD 326
            P++  C             N   V  G +DS   IF+++   D  G    SR++T    
Sbjct: 109 -PWVMECA---------FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKG 158
Query: 327 KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-----TNHKKSVRSVALH 381
                    D  T     +ITGS D T  LWD+  G+ +        + H   V S++++
Sbjct: 159 YASSCQYVPDQETR----LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 382 P-TLYMFASASPD-NIKQWKCP-EGKFIQNLPGHNAIINSICVNNEGV-LVSGADNGTMC 437
                MF S S D  ++ W      + ++   GH   INS+    +G    +G+D+GT  
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCR 274
Query: 438 FWDWRTGYNFQ 448
            +D RTG+  Q
Sbjct: 275 LFDMRTGHQLQ 285

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 92/235 (39%), Gaps = 45/235 (19%)
Query: 209 WKLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVR 265
           W    V+S GH   VR VA  P   + A+ S D    +W       +   +L GH   V+
Sbjct: 50  WICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK 109
Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES-GIFSMTFDNSGSRLITTE 324
            +  +P    L +C  D++V  W+++          ++S +  +  + +  S   L +  
Sbjct: 110 SVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS 169
Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL 384
            D TVKLY+E     EE   V                     TL  H+ +V S+A  P+ 
Sbjct: 170 YDDTVKLYRE-----EEDDWVCCA------------------TLEGHESTVWSLAFDPSG 206
Query: 385 YMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCF 438
              AS S D  ++ W+       Q LPG          N +GV  SG+D    C 
Sbjct: 207 QRLASCSDDRTVRIWR-------QYLPG----------NEQGVACSGSDPSWKCI 244

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
           H G V  +++ P    F +G+ D   K+WD+  G  + + TGH   +  +   P      
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
           +  DD T + +DL  ++  +     +   GI S++F  SG  L+              +A
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
           D+   L   D+       T++   V TGS D  +++W+
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
           + + ++T S D T  LWD+  G+   T T H   V S++L P   +F S + D + K W 
Sbjct: 164 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 223
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
             EG   Q   GH + IN+IC   N     +G+D+ T   +D R
Sbjct: 224 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
           H G V  +++ P    F +G+ D   K+WD+  G  + + TGH   +  +   P      
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
           +  DD T + +DL  ++  +     +   GI S++F  SG  L+              +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
           D+   L   D+       T++   V TGS D  +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
           + + ++T S D T  LWD+  G+   T T H   V S++L P   +F S + D + K W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
             EG   Q   GH + IN+IC   N     +G+D+ T   +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
           H G V  +++ P    F +G+ D   K+WD+  G  + + TGH   +  +   P      
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
           +  DD T + +DL  ++  +     +   GI S++F  SG  L+              +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
           D+   L   D+       T++   V TGS D  +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
           + + ++T S D T  LWD+  G+   T T H   V S++L P   +F S + D + K W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
             EG   Q   GH + IN+IC   N     +G+D+ T   +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
           H G V  +++ P    F +G+ D   K+WD+  G  + + TGH   +  +   P      
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
           +  DD T + +DL  ++  +     +   GI S++F  SG  L+              +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
           D+   L   D+       T++   V TGS D  +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
           + + ++T S D T  LWD+  G+   T T H   V S++L P   +F S + D + K W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
             EG   Q   GH + IN+IC   N     +G+D+ T   +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 17/158 (10%)
Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF 277
           H G V  +++ P    F +G+ D   K+WD+  G  + + TGH   +  +   P      
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 278 SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI------------TTEA 325
           +  DD T + +DL  ++  +     +   GI S++F  SG  L+              +A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 326 DKTVKLYKEDD-----SATEESHPVITGSHDCTIRLWD 358
           D+   L   D+       T++   V TGS D  +++W+
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWK 399
           + + ++T S D T  LWD+  G+   T T H   V S++L P   +F S + D + K W 
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212
Query: 400 CPEGKFIQNLPGHNAIINSIC-VNNEGVLVSGADNGTMCFWDWR 442
             EG   Q   GH + IN+IC   N     +G+D+ T   +D R
Sbjct: 213 VREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
           K    +  H   V C++  P +E+  ATGSADK + +WDL   KLKL S   H   +  +
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
             SP +   L S G DR +  WDL  +K   +  + D+E G   + F + G
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 376

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
           K    +  H   V C++  P +E+  ATGSADK + +WDL   KLKL S   H   +  +
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
             SP +   L S G DR +  WDL  +K   +  + D+E G   + F + G
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 378

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
           K    +  H   V C++  P +E+  ATGSADK + +WDL   KLKL S   H   +  +
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
             SP +   L S G DR +  WDL  +K   +  + D+E G   + F + G
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDL--SKIGEEQSTEDAEDGPPELLFIHGG 380

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
           K   ++  H   V C++  P +E+  ATGSADK + +WDL   KLKL +   H   +  +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
             SP +   L S G DR +  WDL  +K   +  + D+E G   + F + G
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDL--SKIGEEQSAEDAEDGPPELLFIHGG 374

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 210 KLYRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGL 267
           K   ++  H   V C++  P +E+  ATGSADK + +WDL   KLKL +   H   +  +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 268 TVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
             SP +   L S G DR +  WDL  +K   +  + D+E G   + F + G
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDL--SKIGEEQSAEDAEDGPPELLFIHGG 374

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 215 ISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPR 272
           +  H   V C++  P +E+  ATGSADK + +WDL   KLKL S   H   +  +  SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 273 HP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
           +   L S G DR +  WDL  +K   +    D+E G   + F + G
Sbjct: 329 NETILASSGTDRRLNVWDL--SKIGEEQSPEDAEDGPPELLFIHGG 372

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 210 KLYRVISGHLGWVRCVAVEP---GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266
           +L +   GH   V C+ + P   GN  F +G  DK   VWD+ +G+   +   H   V  
Sbjct: 187 QLLQSFHGHGADVLCLDLAPSETGNT-FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF---SMTFDNSGSRLITT 323
           +   P      S  DD T + +DL   +A  +      ES IF   S+ F  SG RL+  
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDL---RADREVAIYSKESIIFGASSVDFSLSG-RLL-- 299
Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
                                   G +D TI +WD+  G  +  L  H+  V ++ + P 
Sbjct: 300 ----------------------FAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPD 337
Query: 384 LYMFASASPDN 394
              F S S D+
Sbjct: 338 GTAFCSGSWDH 348

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 97/270 (35%), Gaps = 55/270 (20%)
Query: 31  GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
           GH   V+ ++L       I++  D T R+WD+RT        GH + + SV       Q+
Sbjct: 74  GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 91  GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSV 150
                                         L  G  R  +L  I  +C  +  E      
Sbjct: 134 ------------------------------LSAGAEREIKLWNILGECKFSSAE------ 157
Query: 151 HTLVFRSLKRTHDMFISCQELVP--STENQLVPTTASNTQIIQQAKAKALPMPKPQWHAP 208
                   K  H  ++SC    P   + N++ P       +    + K        W+  
Sbjct: 158 --------KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKV-------WNTN 202
Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           +++      H   V  +++ P  ++ ATG  DK + +WD+              ++  + 
Sbjct: 203 FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIA 262
Query: 269 VSPRHPYLFSCGDDRTVKCWDL-EYNKAPV 297
            +P+  ++ + G D+ VK ++L   +KAPV
Sbjct: 263 FNPKLQWV-AVGTDQGVKIFNLMTQSKAPV 291

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 105/265 (39%), Gaps = 48/265 (18%)
Query: 222 VRCVAVEPGNEWFATGSADKIIKVW---DLATGKLKLSL----TGHVGSVRGLTVSPRHP 274
           +R VA  P     A GS D  + +W   + A    ++ L     GH   V+G+  S    
Sbjct: 61  IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE--SGIFSMTFDNSGSRLITTEADKTVKLY 332
           YL +C  D++V  W+ + +    +  S+  E    +  + +  S + L ++  D TV+++
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 333 KEDD---------------------SATEESHPVITGSHDCTIRLWDLAAGKS------L 365
           K+ D                       TE    + +GS D T+R+W             +
Sbjct: 181 KDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240
Query: 366 CTL---TNHKKSVRSVALHPTLYMFASASPDNI--------KQWKCPEGKFIQNLPGHNA 414
           C       HK+ V +VA      + AS   D +         +WK    + + +      
Sbjct: 241 CEAILPDVHKRQVYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEIN 299
Query: 415 IINSICVNNEGVLVSGADNGTMCFW 439
           ++  + +N + +L +G D+G + FW
Sbjct: 300 VVKWLELNGKTILATGGDDGIVNFW 324

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
           F TG AD ++K+W    D  T  L+ +L GH   VR +  SP      YL S   DRT  
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
            W  +  + P +   +  E     ++  ++  SG+ L  +  D  V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
           F TG AD ++K+W    D  T  L+ +L GH   VR +  SP      Y+ S   DRT  
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
            W  +  + P +   +  E     ++  ++  SG+ L  +  D  V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
           F TG AD ++K+W    D  T  L+ +L GH   VR +  SP      YL S   DRT  
Sbjct: 175 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 234
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
            W  +  + P +   +  E     ++  ++  SG+ L  +  D  V L+KE+
Sbjct: 235 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
           F TG AD ++K+W    D  T  L+ +L GH   VR +  SP      YL S   DRT  
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSESG---IFSMTFDNSGSRLITTEADKTVKLYKED 335
            W  +  + P +   +  E     ++  ++  SG+ L  +  D  V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 92/234 (39%), Gaps = 27/234 (11%)
Query: 221 WVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPRHPYLFS 278
           ++R   + P       G     + +WDLA  T ++K  LT    +   L +SP     FS
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 279 CGDDRTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD 336
           C  D  +  WDL +N+  V+   G  D  S I      N G++L T   D TV+ +   +
Sbjct: 159 CCSDGNIAVWDL-HNQTLVRQFQGHTDGASCI---DISNDGTKLWTGGLDNTVRSWDLRE 214
Query: 337 SATEESHPV---ITGSHDCTIRLWDLAAG---KSLCTLTNHKKSVRSVALHPTLYM---- 386
               + H     I     C    W LA G    ++  L  +K     + LH +  +    
Sbjct: 215 GRQLQQHDFTSQIFSLGYCPTGEW-LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 387 ------FASASPDN-IKQWKCPEGKFI-QNLPGHNAIINSICVNNEGVLVSGAD 432
                 F S   DN +  W+ P G  I Q+    + +   I V+++ ++    D
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGD 327

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 234 FATGSADKIIKVW----DLATGKLKLSLTGHVGSVRGLTVSPR---HPYLFSCGDDRTVK 286
           F TG AD ++K+W    D  T  L+ +L GH   VR +  SP      Y  S   DRT  
Sbjct: 173 FVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCI 232
Query: 287 CWDLEYNKAPVQPGSMDSE---SGIFSMTFDNSGSRLITTEADKTVKLYKED 335
            W  +  + P +   +  E     ++  ++  SG+ L  +  D  V L+KE+
Sbjct: 233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT---- 268
           ++ GH   V  +A  P N+   A+GS D  + VW++  G L L L   V ++ G T    
Sbjct: 76  LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 269 VSPRHP----YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +   HP     L S G D  +  WD+    A +  G       I+S+ +   G+ + T+ 
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 325 ADKTVKLYK--------EDDSATEESHPV 345
            DK V++ +        E D   E + PV
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARV 59
           VW++  G L L L   V ++          GH   V  ++ HPT  +VL++AG D+   V
Sbjct: 108 VWEIPDGGLVLPLREPVITL---------EGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
Query: 60  WDVRTKANVYTLTG--HTNTIASV 81
           WDV T A V TL    H +TI SV
Sbjct: 159 WDVGTGAAVLTLGPDVHPDTIYSV 182

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 17/149 (11%)
Query: 214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT---- 268
           ++ GH   V  +A  P N+   A+GS D  + VW++  G L L L   V ++ G T    
Sbjct: 76  LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 269 VSPRHP----YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           +   HP     L S G D  +  WD+    A +  G       I+S+ +   G+ + T+ 
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195
Query: 325 ADKTVKLYK--------EDDSATEESHPV 345
            DK V++ +        E D   E + PV
Sbjct: 196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.98
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.98
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.97
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.93
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.93
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.93
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.91
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.88
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.85
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.85
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.85
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.79
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.75
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.71
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.69
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.69
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.68
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.65
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.65
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.65
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.64
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.6
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.54
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.49
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.49
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.49
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.49
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.46
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.43
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.42
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.41
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.39
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.39
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.37
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.37
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.31
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.3
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.29
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.28
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.25
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.21
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.18
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.15
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.13
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.09
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.09
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.08
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.08
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.0
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.92
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.9
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.89
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.88
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.87
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.87
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.83
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	98.82
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.79
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.78
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.77
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.74
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.73
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.68
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.66
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.6
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.58
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.55
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.49
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.45
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.41
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.4
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.29
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.29
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.23
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.22
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.2
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.15
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.06
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.03
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.02
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.93
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.91
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.9
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.9
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.89
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.87
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.85
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	97.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.79
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.77
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.75
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.72
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.66
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.62
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.61
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.47
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.46
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.46
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.39
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.38
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.38
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.28
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	96.79
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.68
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.55
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.52
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.46
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.23
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.98
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.97
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.5
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.15
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.89
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.76
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.15
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	93.67
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	93.27
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	93.18
2p4o_A	306	Hypothetical protein; putative lactonase, structur	92.87
3kya_A	496	Putative phosphatase; structural genomics, joint c	92.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	92.41
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	92.35
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	92.34
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.6
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	91.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	91.39
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	91.19
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	90.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	90.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	89.67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	88.89
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	88.7
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	88.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.69
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	86.41
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	85.17
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	83.96
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	82.6
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	82.36
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	82.13
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	80.64
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	80.4

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-44  Score=370.08  Aligned_cols=362  Identities=17%  Similarity=0.294  Sum_probs=269.4

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      ..+.|.||.+.|++++|+|+|++||||+.|++|||||+.+++  ...++.+|.+.|.++.|+++...     ++      
T Consensus        51 ~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~-----l~------  119 (611)
T 1nr0_A           51 DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR-----IA------  119 (611)
T ss_dssp             CCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCE-----EE------
T ss_pred             cCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCE-----EE------
Confidence            455788999999999999999999999999999999997654  35678899999999999876532     11      


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                         ..+..         ....+.+++|+....    ...+ ..+...+....+                .|.....++..
T Consensus       120 ---~~~~~---------~~~~~~v~~wd~~~~----~~~l-~gh~~~v~~v~f----------------~p~~~~~l~s~  166 (611)
T 1nr0_A          120 ---AVGEG---------RERFGHVFLFDTGTS----NGNL-TGQARAMNSVDF----------------KPSRPFRIISG  166 (611)
T ss_dssp             ---EEECC---------SSCSEEEEETTTCCB----CBCC-CCCSSCEEEEEE----------------CSSSSCEEEEE
T ss_pred             ---EEECC---------CCceeEEEEeeCCCC----ccee-cCCCCCceEEEE----------------CCCCCeEEEEE
Confidence               11100         001235666663210    0000 001111222222                22111122222


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCC-CcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe---
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWH-APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT---  258 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~---  258 (479)
                      +.+....+              |. .+.+....+.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++....+.   
T Consensus       167 s~D~~v~l--------------wd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~  232 (611)
T 1nr0_A          167 SDDNTVAI--------------FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS  232 (611)
T ss_dssp             ETTSCEEE--------------EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTT
T ss_pred             eCCCeEEE--------------EECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccc
Confidence            22111111              11 2345567889999999999999999999999999999999999999888874   


Q ss_pred             ----cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC-----------------------------------
Q psy8895         259 ----GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP-----------------------------------  299 (479)
Q Consensus       259 ----~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-----------------------------------  299 (479)
                          +|.+.|.+++|+|++++|++++.|++|++||+++.+.....                                   
T Consensus       233 ~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~  312 (611)
T 1nr0_A          233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  312 (611)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCC
Confidence                79999999999999999999999999999999865432100                                   


Q ss_pred             ------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------------
Q psy8895         300 ------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------------  338 (479)
Q Consensus       300 ------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------------  338 (479)
                            ....+...|.+++|+|+++.+++++.|++|++|+.....                                   
T Consensus       313 ~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~  392 (611)
T 1nr0_A          313 LGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV  392 (611)
T ss_dssp             TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred             CCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence                  012456789999999999999999999999999864310                                   


Q ss_pred             ----------------------------------------------------------------CCCCCeEEEEeCCCcE
Q psy8895         339 ----------------------------------------------------------------TEESHPVITGSHDCTI  354 (479)
Q Consensus       339 ----------------------------------------------------------------~~~~~~l~sgs~d~~v  354 (479)
                                                                                      .+++..+++|+.|++|
T Consensus       393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v  472 (611)
T 1nr0_A          393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  472 (611)
T ss_dssp             ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence                                                                            0123468899999999


Q ss_pred             EEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC-CeEEee--ecCCcceEEEEEEcCCC-EE
Q psy8895         355 RLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE-GKFIQN--LPGHNAIINSICVNNEG-VL  427 (479)
Q Consensus       355 ~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~-~~~~~~--~~~h~~~v~~l~~~~~~-~l  427 (479)
                      ++||+..++.  +.. .+|...|++++|+|++++|++++.|. +++|+..+ +++...  +.+|...|++++|+||+ +|
T Consensus       473 ~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~l  551 (611)
T 1nr0_A          473 HVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  551 (611)
T ss_dssp             EEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             EEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEE
Confidence            9999987643  334 67999999999999999999998885 99999987 666554  34599999999999999 89


Q ss_pred             EEEeCCCcEEEEecCCCe
Q psy8895         428 VSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~  445 (479)
                      ++|+.|++|++||++++.
T Consensus       552 asgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          552 ATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             EEEETTSCEEEEETTCTT
T ss_pred             EEEECCCcEEEEECCCcc
Confidence            999999999999998764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.6e-43  Score=362.48  Aligned_cols=347  Identities=20%  Similarity=0.270  Sum_probs=273.4

Q ss_pred             CcccccCc--eEEEeecccceeEeeEE----------------------------eeecCCcccceEEEEEccCCc-eEE
Q psy8895           1 VWDLATGK--LKLSLTGHVGSVRGLTV----------------------------IRHYHGHLSSVNTISLHPTID-VLI   49 (479)
Q Consensus         1 ~Wd~~~~~--~~~~~~g~~~~v~~~~~----------------------------~~~~~gH~~~V~~l~~sp~g~-~la   49 (479)
                      |||+.+++  ++.++.+|.+.|.++.+                            ...+.||.+.|++++|+|+++ .||
T Consensus        85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEE
Confidence            69987554  45678999998887642                            124679999999999999987 599


Q ss_pred             EecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccch
Q psy8895          50 TAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPW  129 (479)
Q Consensus        50 Sgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  129 (479)
                      |||.|++|++||..+++.+.++.+|...|.++.|+++...                           +.+...++++++|
T Consensus       165 s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~---------------------------las~s~D~~i~lw  217 (611)
T 1nr0_A          165 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL---------------------------FASTGGDGTIVLY  217 (611)
T ss_dssp             EEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE---------------------------EEEEETTSCEEEE
T ss_pred             EEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCE---------------------------EEEEECCCcEEEE
Confidence            9999999999999999999999999999999999876431                           1122355788888


Q ss_pred             hhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcc
Q psy8895         130 QLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPW  209 (479)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (479)
                      +....+.             .     ..                     + .  . . .                .    
T Consensus       218 d~~~g~~-------------~-----~~---------------------~-~--~-~-~----------------~----  233 (611)
T 1nr0_A          218 NGVDGTK-------------T-----GV---------------------F-E--D-D-S----------------L----  233 (611)
T ss_dssp             ETTTCCE-------------E-----EE---------------------C-B--C-T-T----------------S----
T ss_pred             ECCCCcE-------------e-----ee---------------------e-c--c-c-c----------------c----
Confidence            7532100             0     00                     0 0  0 0 0                0    


Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE----------------------------------
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL----------------------------------  255 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~----------------------------------  255 (479)
                          ...+|.+.|.+++|+|+|++|++++.|++|++||+.++++..                                  
T Consensus       234 ----~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~  309 (611)
T 1nr0_A          234 ----KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV  309 (611)
T ss_dssp             ----SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred             ----cccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence                012699999999999999999999999999999998876543                                  


Q ss_pred             ---------EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-------------------------
Q psy8895         256 ---------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS-------------------------  301 (479)
Q Consensus       256 ---------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-------------------------  301 (479)
                               .+.+|...|.+++|+|++++|++++.|++|++||+.+++.......                         
T Consensus       310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~  389 (611)
T 1nr0_A          310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH  389 (611)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred             eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence                     3457999999999999999999999999999999875432110000                         


Q ss_pred             -------------------------------------------------------CCCCCCeEEEEEeCCCCEEEEEeCC
Q psy8895         302 -------------------------------------------------------MDSESGIFSMTFDNSGSRLITTEAD  326 (479)
Q Consensus       302 -------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d  326 (479)
                                                                             ..+...+.+++|+|+++.+++++.|
T Consensus       390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D  469 (611)
T 1nr0_A          390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD  469 (611)
T ss_dssp             EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred             eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence                                                                   0011346789999999999999999


Q ss_pred             CeEEEEeCCCCC------------------CCCCCeEEEEeCCCcEEEEECCC-CeeEEE--EccCCCceEEEEEeCCCc
Q psy8895         327 KTVKLYKEDDSA------------------TEESHPVITGSHDCTIRLWDLAA-GKSLCT--LTNHKKSVRSVALHPTLY  385 (479)
Q Consensus       327 ~~i~~~~~~~~~------------------~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~--~~~h~~~v~~i~~~~~~~  385 (479)
                      ++|++|+.....                  .+++..|++++.|++|++||+.+ ++.+..  +..|...|++++|+|+++
T Consensus       470 ~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~  549 (611)
T 1nr0_A          470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV  549 (611)
T ss_dssp             SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS
T ss_pred             CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCC
Confidence            999999975421                  23567899999999999999987 555544  334999999999999999


Q ss_pred             EEEEEcCCc-EEEEeCCCCe-EE-eeecCC-cceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         386 MFASASPDN-IKQWKCPEGK-FI-QNLPGH-NAIINSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       386 ~l~s~s~d~-i~~w~~~~~~-~~-~~~~~h-~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      +|++++.|+ |++|++.++. .. ..+.+| ...|.+++|+|++.|++++.|++|++||+.
T Consensus       550 ~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          550 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence            999999885 9999998765 33 667899 899999999999999999999999999973

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-43  Score=347.73  Aligned_cols=307  Identities=26%  Similarity=0.456  Sum_probs=253.1

Q ss_pred             eecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895          27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV  106 (479)
Q Consensus        27 ~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (479)
                      ..+.||.++|++++|+|++++|||||.|++|+|||+.+++.+.++.+|.+.|.++.|.+++..                 
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~-----------------  164 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL-----------------  164 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSE-----------------
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCE-----------------
Confidence            356799999999999999999999999999999999999999999999999999999765321                 


Q ss_pred             ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895         107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN  186 (479)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  186 (479)
                                +.+...++++++|+....                                                    
T Consensus       165 ----------l~sgs~D~~i~iwd~~~~----------------------------------------------------  182 (410)
T 1vyh_C          165 ----------LASCSADMTIKLWDFQGF----------------------------------------------------  182 (410)
T ss_dssp             ----------EEEEETTSCCCEEETTSS----------------------------------------------------
T ss_pred             ----------EEEEeCCCeEEEEeCCCC----------------------------------------------------
Confidence                      112234577888865310                                                    


Q ss_pred             hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE
Q psy8895         187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG  266 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~  266 (479)
                                             +..+.+.+|...|.+++|+|++++|++|+.|++|++||+.++.++..+.+|...|.+
T Consensus       183 -----------------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~  239 (410)
T 1vyh_C          183 -----------------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM  239 (410)
T ss_dssp             -----------------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             -----------------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence                                   112245679999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895         267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI  346 (479)
Q Consensus       267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~  346 (479)
                      ++++|++.++++|+.|++|++||+++.+.....  ..+...+.++.|+|+..+.......+..     ..........++
T Consensus       240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~l~  312 (410)
T 1vyh_C          240 VRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSE-----TKKSGKPGPFLL  312 (410)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC------------CCEEE
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeEe--cCCCceEEEEEEcCcccccchhhhcccc-----ccccCCCCCEEE
Confidence            999999999999999999999999876544322  2456789999999865321110000000     000011246799


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG  425 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~  425 (479)
                      +|+.|++|++||+++++++.++.+|...|++++|+|++.+|++++.|+ |++||..+++++..+.+|...|++++|+|++
T Consensus       313 sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~  392 (410)
T 1vyh_C          313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA  392 (410)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred             EEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence            999999999999999999999999999999999999999999998885 9999999999999999999999999999998


Q ss_pred             -EEEEEeCCCcEEEEecC
Q psy8895         426 -VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~  442 (479)
                       +|++|+.||+|++|+.+
T Consensus       393 ~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          393 PYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             SCEEEEETTSEEEEEC--
T ss_pred             CEEEEEeCCCcEEEEeCC
Confidence             89999999999999863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.7e-41  Score=345.23  Aligned_cols=412  Identities=28%  Similarity=0.478  Sum_probs=288.1

Q ss_pred             ceEEEeecccceeEeeE-------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEee
Q psy8895           8 KLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDV   62 (479)
Q Consensus         8 ~~~~~~~g~~~~v~~~~-------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~   62 (479)
                      +..+.|.||.+.|+++.                         +++++.||.++|++|+|+|||++|||++.|++|+|||+
T Consensus         7 ~e~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~   86 (577)
T 2ymu_A            7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR   86 (577)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEeeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            44577999999999875                         36678899999999999999999999999999999995


Q ss_pred             cccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceee-------------------eccccccc
Q psy8895          63 RTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLS-------------------CLPSLLDF  123 (479)
Q Consensus        63 ~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~  123 (479)
                       +++.+.++.+|...|.++.|.++....     .....+..+...........                   .+......
T Consensus        87 -~~~~~~~~~~~~~~v~~~~~s~d~~~l-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  160 (577)
T 2ymu_A           87 -NGQLLQTLTGHSSSVRGVAFSPDGQTI-----ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD  160 (577)
T ss_dssp             -TSCEEEEECCCSSCEEEEEECTTSSEE-----EEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             -CCCEEEEEECCCCCEEEEEECCCCCEE-----EEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccc
Confidence             678899999999999999998765431     11111111111110000000                   00001111


Q ss_pred             ccccchhhhhhhhhcccchhhhhccceeeEEeeccc----------------c---------ccceeccccccccccccc
Q psy8895         124 GTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLK----------------R---------THDMFISCQELVPSTENQ  178 (479)
Q Consensus       124 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~---------~~~~~~~~~~~~~~~~~~  178 (479)
                      +.+++|.........    .......+....+.+..                .         .+...+....+.+ ....
T Consensus       161 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~s~-dg~~  235 (577)
T 2ymu_A          161 KTVKLWNRNGQLLQT----LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP-DGQT  235 (577)
T ss_dssp             SEEEEECTTSCEEEE----EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECT-TSSC
T ss_pred             cceeccccceeeeee----ccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCCcEEEEEecCCCCEEEEEECC-CCCE
Confidence            122222211000000    00000000000000000                0         0000000000111 1111


Q ss_pred             cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895         179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT  258 (479)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~  258 (479)
                      ++....+.. +             ..|....+....+.+|...|.+++|+|+++++++++.|+.|++||. +++....+.
T Consensus       236 l~~~~~d~~-i-------------~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~  300 (577)
T 2ymu_A          236 IASASDDKT-V-------------KLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLT  300 (577)
T ss_dssp             EEEEETTSC-E-------------EEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC
T ss_pred             EEEEeCCCE-E-------------EEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEe
Confidence            111111110 0             1244445666788999999999999999999999999999999996 467778899


Q ss_pred             cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       259 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      +|...|.+++|+|++.++++++.|+.|++||.........   ..+...+.+++|+|++..+++++.++.+++|+.....
T Consensus       301 ~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~---~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~  377 (577)
T 2ymu_A          301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL  377 (577)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCE
T ss_pred             cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEE---eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCE
Confidence            9999999999999999999999999999999865433221   2456789999999999999999999999999964321


Q ss_pred             ----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCC
Q psy8895         339 ----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCP  401 (479)
Q Consensus       339 ----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~  401 (479)
                                      .+++..+++++.|++|++||. +++.+.++.+|...|++++|+|++.++++++.|. +++|+. 
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-  455 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-  455 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-
Confidence                            134567999999999999995 4678888999999999999999999999998885 999996 


Q ss_pred             CCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         402 EGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       402 ~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +++.+..+.+|...|.+++|+|++ +|++++.|++|++||. +++.++.++
T Consensus       456 ~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~  505 (577)
T 2ymu_A          456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  505 (577)
T ss_dssp             TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEE
T ss_pred             CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEe
Confidence            677888999999999999999999 8999999999999995 677766553

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-41  Score=326.65  Aligned_cols=291  Identities=23%  Similarity=0.387  Sum_probs=242.6

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ...+++.||.++|++++|+|++++|+|||.|++|+|||+.+++.+.++..|...+.++.|.++...     +        
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l--------  112 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY-----V--------  112 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSE-----E--------
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCE-----E--------
Confidence            356678999999999999999999999999999999999999999999999999999998775421     1        


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                                    .+...++.+++|++...+                                                
T Consensus       113 --------------~s~~~d~~v~iw~~~~~~------------------------------------------------  130 (340)
T 1got_B          113 --------------ACGGLDNICSIYNLKTRE------------------------------------------------  130 (340)
T ss_dssp             --------------EEEETTCEEEEEETTTCS------------------------------------------------
T ss_pred             --------------EEEeCCCeEEEEECccCC------------------------------------------------
Confidence                          111234566666542100                                                


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                                             ...+....+.+|.+.|.++.|++++. +++++.|++|++||+.+++.+..+.+|...
T Consensus       131 -----------------------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~  186 (340)
T 1got_B          131 -----------------------GNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD  186 (340)
T ss_dssp             -----------------------BSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             -----------------------CcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence                                   00122345678999999999998775 899999999999999999999999999999


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      |.+++|+|++.++++|+.|+.|++||+++.......  ..+...|.++.|+|++..+                       
T Consensus       187 v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l-----------------------  241 (340)
T 1got_B          187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TGHESDINAICFFPNGNAF-----------------------  241 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--CCCSSCEEEEEECTTSSEE-----------------------
T ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEE--cCCcCCEEEEEEcCCCCEE-----------------------
Confidence            999999999999999999999999999876554322  2456789999999987654                       


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEcc--CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLTN--HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                        ++|+.|++|++||++.++.+..+..  +...|++++|+|++.++++++.|. |++||..+++.+..+.+|...|.+++
T Consensus       242 --~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~  319 (340)
T 1got_B          242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             --EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred             --EEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence              5667778888888888877776642  335799999999999999998885 99999999999999999999999999


Q ss_pred             EcCCC-EEEEEeCCCcEEEEe
Q psy8895         421 VNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      |+|++ +|+||+.||+|+|||
T Consensus       320 ~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EcCCCCEEEEEcCCccEEecC
Confidence            99999 899999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=7.2e-42  Score=322.53  Aligned_cols=224  Identities=29%  Similarity=0.421  Sum_probs=194.4

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      |...|.+++|+|++++|++|+.|++|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||++......
T Consensus        54 ~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~  133 (304)
T 2ynn_A           54 TETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE  133 (304)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred             cCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh
Confidence            55667888999999999999999999999999999999999999999999999999999999999999999997653322


Q ss_pred             CCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC--------------------CCCCeEEEEeCCCcEEE
Q psy8895         298 QPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSAT--------------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~l~sgs~d~~v~i  356 (479)
                      .. ...+...|.+++|+| ++..+++++.|++|++|+......                    .+...+++|+.|++|++
T Consensus       134 ~~-~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~i  212 (304)
T 2ynn_A          134 QT-FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKI  212 (304)
T ss_dssp             EE-ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEE
T ss_pred             hh-hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEE
Confidence            11 134667899999998 578999999999999999754321                    13457999999999999


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC---EEEEEeC
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG---VLVSGAD  432 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~---~l~sg~~  432 (479)
                      ||+++++++.++.+|...|.+++|+|++.+|++++.|+ |++||..++++.+.+..|...+++++++|++   ++++|++
T Consensus       213 Wd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~  292 (304)
T 2ynn_A          213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFD  292 (304)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEET
T ss_pred             EeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecC
Confidence            99999999999999999999999999999999998885 9999999999999999999999999998876   4777766


Q ss_pred             CCcEEEEecCC
Q psy8895         433 NGTMCFWDWRT  443 (479)
Q Consensus       433 dg~i~lWd~~~  443 (479)
                      || +.+|++..
T Consensus       293 ~g-~~~~~~~~  302 (304)
T 2ynn_A          293 NG-FTVLSLGN  302 (304)
T ss_dssp             TE-EEEEECC-
T ss_pred             Cc-eEEEEecc
Confidence            54 66777754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-41  Score=321.92  Aligned_cols=288  Identities=23%  Similarity=0.324  Sum_probs=241.0

Q ss_pred             EeeecCCcccceEEEEEccC----CceEEEecCCCeEEEEeecccce--EeeecccccceEEEEecCCCCccccceEEec
Q psy8895          25 VIRHYHGHLSSVNTISLHPT----IDVLITAGRDSTARVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVLLE   98 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~----g~~laSgs~D~~vriWd~~t~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   98 (479)
                      +.+...+|.++|++++|+|+    +++|||||.|++|||||+.+++.  ..++.+|...|.++.+.++...         
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~---------   94 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPI---------   94 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSE---------
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCE---------
Confidence            45677899999999999985    57999999999999999987754  4568899999999988765321         


Q ss_pred             cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895          99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ  178 (479)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (479)
                                        +.+...++++++|++...                                            
T Consensus        95 ------------------l~s~s~D~~i~lWd~~~~--------------------------------------------  112 (321)
T 3ow8_A           95 ------------------AASSSLDAHIRLWDLENG--------------------------------------------  112 (321)
T ss_dssp             ------------------EEEEETTSEEEEEETTTT--------------------------------------------
T ss_pred             ------------------EEEEeCCCcEEEEECCCC--------------------------------------------
Confidence                              112234567888875311                                            


Q ss_pred             cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895         179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT  258 (479)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~  258 (479)
                                                     +....+.+|...+.+++|+|++++|++|+.|+.|++||+.+++....+.
T Consensus       113 -------------------------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A          113 -------------------------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             -------------------------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             -------------------------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence                                           0112344566778889999999999999999999999999999999999


Q ss_pred             cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       259 ~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      .|...|.+++|+|++++|++++.|+.|++||+++++.....  ..+...|.+++|+|++..+                  
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~spd~~~l------------------  221 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL--EGHAMPIRSLTFSPDSQLL------------------  221 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCCCEEEECTTSCEE------------------
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cccCCceeEEEEcCCCCEE------------------
Confidence            99999999999999999999999999999999877654332  2355678899999987654                  


Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEE
Q psy8895         339 TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIIN  417 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~  417 (479)
                             ++|+.|++|++||++.++.+.++.+|...|.+++|+|++.+|++++.|. |++||+.+++++..+.+|...|.
T Consensus       222 -------~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~  294 (321)
T 3ow8_A          222 -------VTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVW  294 (321)
T ss_dssp             -------EEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             -------EEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEE
Confidence                   5667788888899988888999999999999999999999999998875 99999999999999999999999


Q ss_pred             EEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         418 SICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       418 ~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +++|+|++ +|++++.||+|++||.
T Consensus       295 ~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          295 GVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeC
Confidence            99999998 8999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.4e-41  Score=344.25  Aligned_cols=329  Identities=32%  Similarity=0.565  Sum_probs=273.9

Q ss_pred             CcccccCceEEEeecccceeEeeE-------------------------EeeecCCcccceEEEEEccCCceEEEecCCC
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLT-------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDS   55 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~-------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~   55 (479)
                      +||. +++++.++.+|.+.|+++.                         .+..+.+|..+|++++|+|+++.|++++.|+
T Consensus       206 ~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~  284 (577)
T 2ymu_A          206 LWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK  284 (577)
T ss_dssp             EECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            5784 5778888999998888764                         2445689999999999999999999999999


Q ss_pred             eEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhh
Q psy8895          56 TARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQ  135 (479)
Q Consensus        56 ~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  135 (479)
                      +|++||. +++.+..+.+|...+.++.|.++...     +.                      ....++.+++|+...  
T Consensus       285 ~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~----------------------t~~~d~~i~~w~~~~--  334 (577)
T 2ymu_A          285 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT-----IA----------------------SASDDKTVKLWNRNG--  334 (577)
T ss_dssp             CEEEEET-TSCEEEEECCCSSCEEEEEECTTSSE-----EE----------------------EEETTSCEEEEETTS--
T ss_pred             EEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCE-----EE----------------------EEeCCCeEEEEeCCC--
Confidence            9999996 46678889999999999988765321     10                      112345666665321  


Q ss_pred             hhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEe
Q psy8895         136 EQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVI  215 (479)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (479)
                                                                                                +....+
T Consensus       335 --------------------------------------------------------------------------~~~~~~  340 (577)
T 2ymu_A          335 --------------------------------------------------------------------------QHLQTL  340 (577)
T ss_dssp             --------------------------------------------------------------------------CEEEEE
T ss_pred             --------------------------------------------------------------------------CeeEEE
Confidence                                                                                      011235


Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+|...|.+++|+|+|+++++|+.|+.|++||. +++.+..+.+|...|.+++|+|+++++++++.|+.|++||... +.
T Consensus       341 ~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~-~~  418 (577)
T 2ymu_A          341 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QL  418 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC-CE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-CE
Confidence            578899999999999999999999999999995 5778888999999999999999999999999999999999643 22


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEEEC
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iwd~  359 (479)
                      ...  ...+...+.+++|+|+++.+++++.|+++++|+.....                .++...+++++.|++|++||.
T Consensus       419 ~~~--~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          419 LQT--LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  496 (577)
T ss_dssp             EEE--EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             EEE--ecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence            211  12456789999999999999999999999999965321                234578999999999999995


Q ss_pred             CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895         360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMC  437 (479)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~  437 (479)
                       +++.+.++.+|...|++++|+|++.+|++++.|. |++||. +++++..+.+|.+.|++++|+||+ +|+|++.|++|+
T Consensus       497 -~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~  574 (577)
T 2ymu_A          497 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVK  574 (577)
T ss_dssp             -TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred             -CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence             5788899999999999999999999999998885 999996 688899999999999999999999 899999999999


Q ss_pred             EEe
Q psy8895         438 FWD  440 (479)
Q Consensus       438 lWd  440 (479)
                      +||
T Consensus       575 ~Wd  577 (577)
T 2ymu_A          575 LWN  577 (577)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=9.3e-41  Score=321.78  Aligned_cols=294  Identities=21%  Similarity=0.305  Sum_probs=240.8

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ...+++.||.++|++++|+|++++|||||.|++|+|||..+++....+..|...+.++.|.++...     +        
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~-----l--------  121 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-----I--------  121 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE-----E--------
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE-----E--------
Confidence            356778999999999999999999999999999999999999999999999999999998776432     1        


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                        +            +...++.+++|++.....                                       +       
T Consensus       122 --a------------sg~~d~~i~v~~~~~~~~---------------------------------------~-------  141 (354)
T 2pbi_B          122 --A------------CGGLDNKCSVYPLTFDKN---------------------------------------E-------  141 (354)
T ss_dssp             --E------------EESTTSEEEEEECCCCTT---------------------------------------C-------
T ss_pred             --E------------EeeCCCCEEEEEEecccc---------------------------------------c-------
Confidence              1            112334555554321000                                       0       


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                        .                     .......+.+|.+.|.+++|+|+++.|++++.|++|++||+.+++.+..+.+|...
T Consensus       142 --~---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          142 --N---------------------MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             --C---------------------SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             --c---------------------ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC
Confidence              0                     00011245679999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895         264 VRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE  341 (479)
Q Consensus       264 v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  341 (479)
                      |.+++++|  ++.++++|+.|++|++||+++++.....  ..+...|.+++|+|++..+                     
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l---------------------  255 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF--ETHESDVNSVRYYPSGDAF---------------------  255 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEE---------------------
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCeEEEEEeCCCCEE---------------------
Confidence            99999987  4689999999999999999877654332  2456789999999987654                     


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEEccC--CCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEE
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNH--KKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINS  418 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~  418 (479)
                          ++|+.|++|++||++.++.+..+..+  ...+.+++|+|++.++++++.| .|++||..+++.+..+.+|...|++
T Consensus       256 ----~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~  331 (354)
T 2pbi_B          256 ----ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVST  331 (354)
T ss_dssp             ----EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEE
T ss_pred             ----EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEE
Confidence                56677778888888877776666533  3578999999999999999877 5999999999999999999999999


Q ss_pred             EEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         419 ICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       419 l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ++|+|++ +|++|+.|++|++|+
T Consensus       332 l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          332 LRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEECCCCCEEEEEcCCCCEEecC
Confidence            9999999 899999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.4e-41  Score=325.20  Aligned_cols=292  Identities=16%  Similarity=0.202  Sum_probs=231.1

Q ss_pred             cCCcccceEEEEEccCCceEEEecC------CCeEEEEeecccceEee----ecccccceEEEEecCCCCccccceEEec
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGR------DSTARVWDVRTKANVYT----LTGHTNTIASVVTQASEPQVGTKTVLLE   98 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~------D~~vriWd~~t~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~   98 (479)
                      ..+|...|++++|+|||++|||||.      |++|++|+..++....+    ..+|...|.++.|.++..      ++  
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~------~l--  109 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG------IL--  109 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE------EE--
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC------EE--
Confidence            3579999999999999999999998      77899999887764333    346888899999876531      11  


Q ss_pred             cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895          99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ  178 (479)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (479)
                             +             ...+++|++|++...+..                                         
T Consensus       110 -------~-------------~s~dg~v~lWd~~~~~~~-----------------------------------------  128 (357)
T 4g56_B          110 -------V-------------ASDSGAVELWEILEKESL-----------------------------------------  128 (357)
T ss_dssp             -------E-------------EETTSCEEEC-------------------------------------------------
T ss_pred             -------E-------------EECCCEEEEeecccccee-----------------------------------------
Confidence                   1             123467888875421000                                         


Q ss_pred             cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895         179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT  258 (479)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~  258 (479)
                      .                              .......+|.+.|.+++|+|++++|++|+.|++|++||+++++.+..+.
T Consensus       129 ~------------------------------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~  178 (357)
T 4g56_B          129 L------------------------------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYN  178 (357)
T ss_dssp             C------------------------------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             E------------------------------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            0                              0001245799999999999999999999999999999999999999999


Q ss_pred             cCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC
Q psy8895         259 GHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS  337 (479)
Q Consensus       259 ~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  337 (479)
                      +|...|.+++|++++. ++++++.|++|++||+++.+.........+...+.+++|+|++.                   
T Consensus       179 ~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~-------------------  239 (357)
T 4g56_B          179 AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKD-------------------  239 (357)
T ss_dssp             CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTST-------------------
T ss_pred             CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhccc-------------------
Confidence            9999999999999875 78899999999999998776554433334556788999988643                   


Q ss_pred             CCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcce
Q psy8895         338 ATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAI  415 (479)
Q Consensus       338 ~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~  415 (479)
                           ..+++|+.|+.|++||+++++++.++.+|...|++++|+|++ .+|++++.| .|++||..+++++..+ +|.+.
T Consensus       240 -----~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~  313 (357)
T 4g56_B          240 -----DTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF  313 (357)
T ss_dssp             -----TEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC
T ss_pred             -----ceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC
Confidence                 235678889999999999999999999999999999999986 678888877 5999999999887654 89999


Q ss_pred             EEEEEEcC-CC-EEEEEeCCCcEEEEecCCC
Q psy8895         416 INSICVNN-EG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       416 v~~l~~~~-~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      |++++|+| ++ +|+||+.||+|++||+.+.
T Consensus       314 V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          314 VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999998 66 8999999999999999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.9e-41  Score=322.56  Aligned_cols=206  Identities=21%  Similarity=0.258  Sum_probs=175.3

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~  292 (479)
                      .+.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++++..+.+|...|.+++|++++. ++++++.|++|++||+++
T Consensus       122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~  201 (344)
T 4gqb_B          122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC  201 (344)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence            3568999999999999999999999999999999999999999999999999999999885 688999999999999987


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      .+.........+...+.++.|+|++.                        ..+++|+.|++|++||+++++++.++.+|.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~p~~~------------------------~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~  257 (344)
T 4gqb_B          202 PKPASQIGCSAPGYLPTSLAWHPQQS------------------------EVFVFGDENGTVSLVDTKSTSCVLSSAVHS  257 (344)
T ss_dssp             SSCEEECC----CCCEEEEEECSSCT------------------------TEEEEEETTSEEEEEESCC--CCEEEECCS
T ss_pred             cceeeeeecceeeccceeeeecCCCC------------------------cceEEeccCCcEEEEECCCCcEEEEEcCCC
Confidence            76554433333445677888887533                        336788889999999999999999999999


Q ss_pred             CceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCC
Q psy8895         373 KSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       373 ~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~  444 (479)
                      ..|++++|+|++ .+|++++.|. |++||..++++. .+.+|.+.|++++|+|++  +|+|||.|++|++|++.++
T Consensus       258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            999999999987 5788888775 999999988765 578999999999999987  5789999999999999874

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.7e-41  Score=330.31  Aligned_cols=301  Identities=23%  Similarity=0.372  Sum_probs=241.4

Q ss_pred             eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      +.+.+++.||.++|++++|+|++++|||||.|++|+|||+.+++.+.++.+|...|.++.|.++...             
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~-------------  122 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQS-------------  122 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSE-------------
T ss_pred             eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCE-------------
Confidence            4567789999999999999999999999999999999999999999999999999999988765432             


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                        +            .+...++.+++|++.....                                     ..       
T Consensus       123 --l------------as~~~d~~v~iw~~~~~~~-------------------------------------~~-------  144 (380)
T 3iz6_a          123 --V------------ACGGLDSACSIFNLSSQAD-------------------------------------RD-------  144 (380)
T ss_dssp             --E------------EECCSSSCCEEEECCCCSS-------------------------------------CC-------
T ss_pred             --E------------EEeeCCCcEEEEECCCCcc-------------------------------------cc-------
Confidence              1            1123446677776531100                                     00       


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEE----
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSL----  257 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~----  257 (479)
                        ..                      ....+.+.+|.+.|.++.|.|+ +..|++|+.|++|++||+.+++.+..+    
T Consensus       145 --~~----------------------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          145 --GN----------------------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             --CS----------------------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             --CC----------------------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence              00                      0011245689999999999986 457999999999999999999988877    


Q ss_pred             -ecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         258 -TGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       258 -~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                       .+|...|.++++++ ++.++++|+.|++|++||++........ ...+...|.++.|+|++..+               
T Consensus       201 ~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~l---------------  264 (380)
T 3iz6_a          201 PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-YHGHEGDINSVKFFPDGQRF---------------  264 (380)
T ss_dssp             SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE-ECCCSSCCCEEEECTTSSEE---------------
T ss_pred             CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE-ECCcCCCeEEEEEecCCCeE---------------
Confidence             67999999999977 7889999999999999999743222111 13466789999999987654               


Q ss_pred             CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC-------CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEe
Q psy8895         336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK-------KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQ  407 (479)
Q Consensus       336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~  407 (479)
                                ++|+.|++|++||+++++.+..+..+.       ..|++++|+|++.++++++.|. |++||..+++...
T Consensus       265 ----------~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~  334 (380)
T 3iz6_a          265 ----------GTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL  334 (380)
T ss_dssp             ----------EEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE
T ss_pred             ----------EEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE
Confidence                      566777788888888888877765442       2489999999999999998775 9999999998877


Q ss_pred             ee----cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         408 NL----PGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       408 ~~----~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .+    .+|.+.|++++|+|++ +|+||+.|++|++|++...
T Consensus       335 ~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          335 NLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence            76    6899999999999999 9999999999999998865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=5.6e-40  Score=311.76  Aligned_cols=291  Identities=26%  Similarity=0.414  Sum_probs=239.3

Q ss_pred             eEEeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecc-----cceEeeecccccceEEEEecCCCCccccceEE
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRT-----KANVYTLTGHTNTIASVVTQASEPQVGTKTVL   96 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~   96 (479)
                      +.+..++.||.++|++|+|+|++ ++|+|||.|++|++||+.+     +..+.++.+|...|.++.|.++...       
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~-------   79 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAY-------   79 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSE-------
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCE-------
Confidence            55677889999999999999975 8999999999999999874     3457789999999999998765431       


Q ss_pred             eccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccc
Q psy8895          97 LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE  176 (479)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (479)
                                          +.+...++++++|++...                                          
T Consensus        80 --------------------l~s~s~D~~v~~wd~~~~------------------------------------------   97 (319)
T 3frx_A           80 --------------------ALSASWDKTLRLWDVATG------------------------------------------   97 (319)
T ss_dssp             --------------------EEEEETTSEEEEEETTTT------------------------------------------
T ss_pred             --------------------EEEEeCCCEEEEEECCCC------------------------------------------
Confidence                                112234577888875310                                          


Q ss_pred             cccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE
Q psy8895         177 NQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS  256 (479)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~  256 (479)
                                                       +....+.+|.+.|.+++|+|++++|++|+.|++|++||++ ++++..
T Consensus        98 ---------------------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~  143 (319)
T 3frx_A           98 ---------------------------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLAT  143 (319)
T ss_dssp             ---------------------------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEE
T ss_pred             ---------------------------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEE
Confidence                                             1123466899999999999999999999999999999996 567778


Q ss_pred             EecCCcCEEEEEEcCC------CCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895         257 LTGHVGSVRGLTVSPR------HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK  330 (479)
Q Consensus       257 ~~~h~~~v~~v~~~~~------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  330 (479)
                      +.+|...|.++.++|.      +..+++++.|+.|++||++..+.....  ..+...|.+++|+|++.++          
T Consensus       144 ~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l----------  211 (319)
T 3frx_A          144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLI----------  211 (319)
T ss_dssp             ECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE--CCCCSCEEEEEECTTSSEE----------
T ss_pred             EeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee--cCCCCcEEEEEEcCCCCEE----------
Confidence            8999999999999985      448999999999999999865543222  3466789999999987664          


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895         331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~  410 (479)
                                     ++|+.|++|++||+.+++.+.++..+ ..|.+++|+|++.++++++.+.+++|+...+..+..+.
T Consensus       212 ---------------~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~  275 (319)
T 3frx_A          212 ---------------ASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLR  275 (319)
T ss_dssp             ---------------EEEETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEEC
T ss_pred             ---------------EEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccC
Confidence                           56777888889999999888888754 68999999999999999999999999998877766654


Q ss_pred             C--------CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         411 G--------HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       411 ~--------h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      .        |...+.+++|+|++ +|++|+.||+|++||+.|+
T Consensus       276 ~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          276 PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            3        45679999999999 9999999999999998875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.7e-40  Score=318.80  Aligned_cols=318  Identities=23%  Similarity=0.344  Sum_probs=237.9

Q ss_pred             eEEeeecCCccc-ceEEEEEccCCceEEEecCCCeEEEEeecccceEe---eecccccceEEEEecCCCCccccceEEec
Q psy8895          23 LTVIRHYHGHLS-SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVY---TLTGHTNTIASVVTQASEPQVGTKTVLLE   98 (479)
Q Consensus        23 ~~~~~~~~gH~~-~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~   98 (479)
                      +.++.++.+|.+ .|.+++|+|+|++|||||.|++|||||++++....   ...+|...|.++.|+++...     +   
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-----l---   76 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNY-----L---   76 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSE-----E---
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCE-----E---
Confidence            456778889988 99999999999999999999999999999876432   23689999999999775431     1   


Q ss_pred             cccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccc
Q psy8895          99 SCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQ  178 (479)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (479)
                                         .+...++++++|+....                                            
T Consensus        77 -------------------~s~s~D~~v~iw~~~~~--------------------------------------------   93 (345)
T 3fm0_A           77 -------------------ASASFDATTCIWKKNQD--------------------------------------------   93 (345)
T ss_dssp             -------------------EEEETTSCEEEEEECCC--------------------------------------------
T ss_pred             -------------------EEEECCCcEEEEEccCC--------------------------------------------
Confidence                               11223456677653210                                            


Q ss_pred             cccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEE
Q psy8895         179 LVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKL  255 (479)
Q Consensus       179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~  255 (479)
                                                   ..+....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++.   +..
T Consensus        94 -----------------------------~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~  144 (345)
T 3fm0_A           94 -----------------------------DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVS  144 (345)
T ss_dssp             ------------------------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             -----------------------------CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEE
Confidence                                         011223567899999999999999999999999999999998763   456


Q ss_pred             EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         256 SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       256 ~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                      .+.+|...|.+++|+|++.+|++++.|++|++||.+............+...|.+++|+|+++++++++.|++|++|+..
T Consensus       145 ~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             EECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             EecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            78899999999999999999999999999999998765422111123466789999999999999999999999999853


Q ss_pred             CCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------
Q psy8895         336 DSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK---------  404 (479)
Q Consensus       336 ~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~---------  404 (479)
                      .......  +.....+.        ..+++.++.+ |...|.+++|+|++..+++++.| .+++|+...+.         
T Consensus       225 ~~~~~~~--~~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~  294 (345)
T 3fm0_A          225 LPGNEQG--VACSGSDP--------SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL  294 (345)
T ss_dssp             CTTCTTC--CCCC---C--------EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred             cCCCCcc--ceeeccCC--------ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence            3221111  10011111        1234556655 88999999999999888888877 49999876542         


Q ss_pred             EEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         405 FIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       405 ~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      ..+.+.+|...|++++|+|++  +||||+.||+|++|++.+++.+..+
T Consensus       295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~  342 (345)
T 3fm0_A          295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH  342 (345)
T ss_dssp             EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred             EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence            123346899999999999975  8999999999999999988765443

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-40  Score=316.42  Aligned_cols=231  Identities=19%  Similarity=0.338  Sum_probs=193.1

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+.+|...|.+++|+|++.++++|+.|++|++||+++++....+.+|...|.+++|+|++.++++++.|++|++||+...
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999743


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCC----------CEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSG----------SRLITTEADKTVKLYKEDDSA----------------TEESHPVIT  347 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~s  347 (479)
                      ..........+...+.++.|+|++          ..+++++.|++|++|+.....                .++...|++
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECCCCCEEEE
Confidence            222111122456779999999986          789999999999999953211                134568999


Q ss_pred             EeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEe--eec-----------CCc
Q psy8895         348 GSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQ--NLP-----------GHN  413 (479)
Q Consensus       348 gs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~--~~~-----------~h~  413 (479)
                      |+.|++|++||+.. ..+...+ .+...|++++|+|++.++++++++.+++|++.+++...  .+.           +|.
T Consensus       231 gs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (343)
T 2xzm_R          231 GGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKN  309 (343)
T ss_dssp             EETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSC
T ss_pred             EcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCC
Confidence            99999999999954 3444444 34567999999999999998888889999998765433  333           788


Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ..|.+++|+|++ +|++|+.||+|++|++++|+
T Consensus       310 ~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~  342 (343)
T 2xzm_R          310 PQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA  342 (343)
T ss_dssp             CCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred             CceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence            899999999998 89999999999999988764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-39  Score=306.43  Aligned_cols=297  Identities=23%  Similarity=0.314  Sum_probs=214.6

Q ss_pred             eeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeeccc--ceEeee-cc-cccceEEEEecCCCCccccceEEe
Q psy8895          22 GLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTL-TG-HTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        22 ~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~--~~~~~~-~~-h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      .+.+++++.+|.++|.+++|+|+  +|||||.|++|+|||+.++  +.+..+ .+ |...|.++.|.++...        
T Consensus         3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~--------   72 (330)
T 2hes_X            3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSL--------   72 (330)
T ss_dssp             CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSE--------
T ss_pred             ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCE--------
Confidence            34566778899999999999997  9999999999999999875  345556 44 9999999999775421        


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                                         +.+...++++++|+......                                        .
T Consensus        73 -------------------las~s~D~~v~iw~~~~~~~----------------------------------------~   93 (330)
T 2hes_X           73 -------------------LAAGSFDSTVSIWAKEESAD----------------------------------------R   93 (330)
T ss_dssp             -------------------EEEEETTSCEEEEEC----------------------------------------------
T ss_pred             -------------------EEEEeCCCcEEEEEcccCcC----------------------------------------c
Confidence                               11223456778886421000                                        0


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ce
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----KL  253 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~~  253 (479)
                                                  ....+....+.+|.+.|.+++|+|+|++|++|+.|++|++||+...    ++
T Consensus        94 ----------------------------~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           94 ----------------------------TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             -----------------------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             ----------------------------cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEE
Confidence                                        0011233467899999999999999999999999999999999432    45


Q ss_pred             EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC--cccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeE
Q psy8895         254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK--APVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTV  329 (479)
Q Consensus       254 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i  329 (479)
                      +..+.+|...|.+++|+|++.+|++++.|++|++||.....  +...  ...+...|.++.|+|+  +..+++       
T Consensus       146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s-------  216 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV--LNGHEGTVWSSDFDKTEGVFRLCS-------  216 (330)
T ss_dssp             EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE--ECCCSSCEEEEEECCSSSSCEEEE-------
T ss_pred             EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE--ccCCCCcEEEEEecCCCCeeEEEE-------
Confidence            67889999999999999999999999999999999986542  2111  1346678999999987  445554       


Q ss_pred             EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC--------eeEEEEcc-CCCceEEEEEeCCCcEEEEEcCC-cEEEEe
Q psy8895         330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAG--------KSLCTLTN-HKKSVRSVALHPTLYMFASASPD-NIKQWK  399 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~--------~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~  399 (479)
                                        |+.|++|++||++.+        .....+.+ |...|.+++|++++. +++++.| .|++|+
T Consensus       217 ------------------~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~-l~s~~~dg~v~iw~  277 (330)
T 2hes_X          217 ------------------GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGL-IASVGADGVLAVYE  277 (330)
T ss_dssp             ------------------EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             ------------------EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCE-EEEEeCCCEEEEEE
Confidence                              445555555554332        33445554 899999999998774 5555555 699999


Q ss_pred             CCCCe--EEe-eecCCcc-eEEEEEEcC--CC-EEEEEeCCCcEEEEecCC
Q psy8895         400 CPEGK--FIQ-NLPGHNA-IINSICVNN--EG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       400 ~~~~~--~~~-~~~~h~~-~v~~l~~~~--~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      ..+++  ... .+.+|.. .|++++++|  ++ +|++|+.||+|+|||+++
T Consensus       278 ~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          278 EVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            88774  333 3467887 899999998  56 899999999999999875

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.5e-38  Score=297.54  Aligned_cols=292  Identities=23%  Similarity=0.409  Sum_probs=239.3

Q ss_pred             eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      ..+..++.||.++|++++|+|++++||||+.|++|+|||+.+++....+.+|...+.++.|.++...     ++      
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~------   81 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL-----LV------   81 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-----EE------
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCE-----EE------
Confidence            3455678899999999999999999999999999999999999999999999999999998765421     11      


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                      ....++.+++|+....                                                
T Consensus        82 ----------------s~~~d~~i~vwd~~~~------------------------------------------------   97 (312)
T 4ery_A           82 ----------------SASDDKTLKIWDVSSG------------------------------------------------   97 (312)
T ss_dssp             ----------------EEETTSEEEEEETTTC------------------------------------------------
T ss_pred             ----------------EECCCCEEEEEECCCC------------------------------------------------
Confidence                            1123456777764210                                                


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                                                 +....+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+..|..
T Consensus        98 ---------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           98 ---------------------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             ---------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             ---------------------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence                                       11234567999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      +|.+++|+|++.++++++.|+.|++||+++.+..... .......+..+.|+|++.++                      
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l----------------------  207 (312)
T 4ery_A          151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-IDDDNPPVSFVKFSPNGKYI----------------------  207 (312)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE-CCSSCCCEEEEEECTTSSEE----------------------
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE-eccCCCceEEEEECCCCCEE----------------------
Confidence            9999999999999999999999999999876543322 12234567888888876654                      


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE--EEE-eCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS--VAL-HPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS  418 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~--i~~-~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~  418 (479)
                         ++++.|+.|++||+++++.+..+.+|...+..  ..+ .+++.++++++.|+ |++||..+++.+..+.+|...|.+
T Consensus       208 ---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~  284 (312)
T 4ery_A          208 ---LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS  284 (312)
T ss_dssp             ---EEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred             ---EEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence               56677788888999989988888888654322  233 46788889888775 999999999999999999999999


Q ss_pred             EEEcCCC-EEEEEe--CCCcEEEEecC
Q psy8895         419 ICVNNEG-VLVSGA--DNGTMCFWDWR  442 (479)
Q Consensus       419 l~~~~~~-~l~sg~--~dg~i~lWd~~  442 (479)
                      ++++|++ .+++++  .|++|++|+.+
T Consensus       285 ~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          285 TACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EeecCcCCceEEEEccCCccEEEecCC
Confidence            9999998 888886  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.5e-38  Score=307.54  Aligned_cols=223  Identities=27%  Similarity=0.502  Sum_probs=194.2

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      +...|.+++|+|+|++|++|+.|++|++||+.+++....+.+|...|.+++|+|++.++++++.|++|++||+++++...
T Consensus       122 ~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~  201 (393)
T 1erj_A          122 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  201 (393)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEE
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999998766543


Q ss_pred             CCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCC------------------------CCCCCeEEEEeCCC
Q psy8895         298 QPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSA------------------------TEESHPVITGSHDC  352 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~------------------------~~~~~~l~sgs~d~  352 (479)
                      ..   .....+.++.++| ++..+++++.|+.|++|+.....                        .++...+++|+.|+
T Consensus       202 ~~---~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~  278 (393)
T 1erj_A          202 TL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  278 (393)
T ss_dssp             EE---ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             EE---EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence            22   2345789999998 88999999999999999975421                        12356799999999


Q ss_pred             cEEEEECCCC------------eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         353 TIRLWDLAAG------------KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       353 ~v~iwd~~~~------------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                      +|++||++..            .+..++.+|...|.+++|+|++.++++++.|. |++||..+++.+..+.+|...|.++
T Consensus       279 ~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v  358 (393)
T 1erj_A          279 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV  358 (393)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence            9999999753            34567788999999999999999999998885 9999999999999999999999999


Q ss_pred             EEcC------CC-EEEEEeCCCcEEEEecCC
Q psy8895         420 CVNN------EG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       420 ~~~~------~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      ++++      ++ +|+||+.||+|++|++++
T Consensus       359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9976      45 899999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.7e-37  Score=296.51  Aligned_cols=230  Identities=22%  Similarity=0.396  Sum_probs=196.4

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+.+|...|.+++|+|+|++|++++.|+.|++|+............+...+..+.+++++.++++++.|+.+++||+...
T Consensus        81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~  160 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV  160 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence            35679999999999999999999999999999999999888888889999999999999999999999999999998754


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSG--SRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTI  354 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v  354 (479)
                      ...... ...+...+..+.|.+++  ..+++++.|+.|++|+.....                 .++...+++|+.|++|
T Consensus       161 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i  239 (340)
T 4aow_A          161 CKYTVQ-DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA  239 (340)
T ss_dssp             EEEEEC-SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             ceEEEE-eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeE
Confidence            432221 23456778889988754  578899999999999976532                 1345689999999999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee---------cCCcceEEEEEEcCCC
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL---------PGHNAIINSICVNNEG  425 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~---------~~h~~~v~~l~~~~~~  425 (479)
                      ++||+++.+++..+..+ ..|.+++|+|++.+++++.++.|++||..++..+..+         .+|...|++++|+|++
T Consensus       240 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          240 MLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             EEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             EEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            99999999999888754 6899999999999998888888999999988776554         3688899999999998


Q ss_pred             -EEEEEeCCCcEEEEecCCCe
Q psy8895         426 -VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~~~  445 (479)
                       +|++|+.||+|+|||+++|.
T Consensus       319 ~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          319 QTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             SEEEEEETTSCEEEEEEEC--
T ss_pred             CEEEEEeCCCEEEEEeCCCcC
Confidence             99999999999999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.2e-38  Score=355.84  Aligned_cols=403  Identities=20%  Similarity=0.371  Sum_probs=301.4

Q ss_pred             CcccccCceEEEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccC--CceEEEec
Q psy8895           1 VWDLATGKLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPT--IDVLITAG   52 (479)
Q Consensus         1 ~Wd~~~~~~~~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~--g~~laSgs   52 (479)
                      |||+.+++.+.++.+|.+.|.++.                          .+..+.+|...|.+++|+|+  +.++++|+
T Consensus       641 vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~  720 (1249)
T 3sfz_A          641 VFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS  720 (1249)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred             EEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEe
Confidence            699999999999999999999874                          25567899999999999995  56899999


Q ss_pred             CCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhh
Q psy8895          53 RDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ  132 (479)
Q Consensus        53 ~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  132 (479)
                      .|++|++||+.+++.+.++.+|.+.+.++.|.++...     ++                      +...++.+++|++.
T Consensus       721 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~-----l~----------------------s~s~dg~v~vwd~~  773 (1249)
T 3sfz_A          721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL-----LA----------------------SCSADGTLRLWDVR  773 (1249)
T ss_dssp             TTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTE-----EE----------------------EEESSSEEEEEEGG
T ss_pred             CCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCE-----EE----------------------EEECCCeEEEEeCC
Confidence            9999999999999999999999999999999775432     11                      12344677888765


Q ss_pred             hhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeE
Q psy8895         133 IIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLY  212 (479)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (479)
                      ..+...........   ...   ..........+.+..+.+. ...++........++..             .......
T Consensus       774 ~~~~~~~~~~~~~~---~~~---~~~~~~~~~~v~~~~~s~d-g~~l~~~~~~~v~~~d~-------------~~~~~~~  833 (1249)
T 3sfz_A          774 SANERKSINVKRFF---LSS---EDPPEDVEVIVKCCSWSAD-GDKIIVAAKNKVLLFDI-------------HTSGLLA  833 (1249)
T ss_dssp             GTEEEEEEECCCCC--------------CCCCCBCCCCBCTT-SSEEEEEETTEEEEEET-------------TTCCEEE
T ss_pred             CCcccceecccccc---ccc---CCccccccceEEEEEECCC-CCEEEEEcCCcEEEEEe-------------cCCCcee
Confidence            32111000000000   000   0000000001111112211 11222211111111100             0011122


Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ....+|...|.+++|+|+++++++++.|+.|++||+.++.....+.+|...|.+++|+|++.++++++.|+.|++||+..
T Consensus       834 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          834 EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             EEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred             EEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence            23458999999999999999999999999999999999999999999999999999999999999999999999998532


Q ss_pred             CCc-----------------------------------------------------------c-----------------
Q psy8895         293 NKA-----------------------------------------------------------P-----------------  296 (479)
Q Consensus       293 ~~~-----------------------------------------------------------~-----------------  296 (479)
                      ...                                                           .                 
T Consensus       914 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~  993 (1249)
T 3sfz_A          914 VCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN  993 (1249)
T ss_dssp             HHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT
T ss_pred             cceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC
Confidence            000                                                           0                 


Q ss_pred             -cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECC
Q psy8895         297 -VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       297 -~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~  360 (479)
                       .......+...|.++.|+|+++.+++++.|+.+++|+......               .....+++++.|++|++||+.
T Consensus       994 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~ 1073 (1249)
T 3sfz_A          994 RVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073 (1249)
T ss_dssp             SCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETT
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECC
Confidence             0000113456788899999999999999999999999765421               123468899999999999999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCF  438 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~l  438 (479)
                      +++.+..+.+|...|++++|+|++..+++++.|+ +++||..+++.+..+.+|.+.|++++|+|++ +|++|+.||+|++
T Consensus      1074 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~v 1153 (1249)
T 3sfz_A         1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRI 1153 (1249)
T ss_dssp             TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCE
T ss_pred             CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEE
Confidence            9999999999999999999999999999998875 9999999999999999999999999999999 9999999999999


Q ss_pred             EecCCCeEEEEE
Q psy8895         439 WDWRTGYNFQRL  450 (479)
Q Consensus       439 Wd~~~~~~~~~~  450 (479)
                      ||+.+++.+..+
T Consensus      1154 wd~~~~~~~~~~ 1165 (1249)
T 3sfz_A         1154 WNVSDGQLLHSC 1165 (1249)
T ss_dssp             EESSSSCCCCCC
T ss_pred             EECCCCceEEEe
Confidence            999999776543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=9.3e-37  Score=287.50  Aligned_cols=249  Identities=20%  Similarity=0.337  Sum_probs=217.1

Q ss_pred             eEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      ..+++.+|.+.|.+++|+|++++|++|+.|++|++||+.++..+..+..|..+|.+++|+|+++++++|+.|++|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CC-CCCeEEEEeCC
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TE-ESHPVITGSHD  351 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~-~~~~l~sgs~d  351 (479)
                      ++++.....  ..+...|.+++|+|++..+++++.|++|++|+.....                  .+ +...+++|+.|
T Consensus        85 ~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           85 NTGEKVVDF--EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             TTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             CCCcEEEEE--eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            877654332  3466789999999999999999999999999975431                  01 34579999999


Q ss_pred             CcEEEEECCCCeeEEEEc-cCCCceEEEEEeC--CCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-E
Q psy8895         352 CTIRLWDLAAGKSLCTLT-NHKKSVRSVALHP--TLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-V  426 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~--~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~  426 (479)
                      ++|++||++...+...+. +|...+..++++|  ++.++++++.|. |++||..+++++..+.+|...|.+++|+|++ +
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence            999999998877766654 5668899999987  677888888875 9999999999999999999999999999998 8


Q ss_pred             EEEEeCCCcEEEEecCCCeEEEEEEE-----eEecCCCCC
Q psy8895         427 LVSGADNGTMCFWDWRTGYNFQRLQV-----RCVSGFPKP  461 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~~~~~~~~~-----~~~~~~~~~  461 (479)
                      |++|+.||+|++||.++++.++.++.     .|+..+|+.
T Consensus       243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG  282 (304)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTC
T ss_pred             EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCC
Confidence            99999999999999999988877643     345555544

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.3e-36  Score=311.17  Aligned_cols=365  Identities=16%  Similarity=0.217  Sum_probs=255.2

Q ss_pred             EeeecCCcccc-eEEEEEcc--CCceEEEecCCCeEEEEeeccc--------ceEeeecccccceEEEEecCCCCccccc
Q psy8895          25 VIRHYHGHLSS-VNTISLHP--TIDVLITAGRDSTARVWDVRTK--------ANVYTLTGHTNTIASVVTQASEPQVGTK   93 (479)
Q Consensus        25 ~~~~~~gH~~~-V~~l~~sp--~g~~laSgs~D~~vriWd~~t~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~   93 (479)
                      .+..+.+|.+. |++++|+|  ++++||+|+.|++|+|||+.++        +.+.++.+|...+.++.|.++...    
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----  130 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRR----  130 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSE----
T ss_pred             cceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCE----
Confidence            34567889999 99999999  9999999999999999999865        667788899999999999876432    


Q ss_pred             eEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccc
Q psy8895          94 TVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVP  173 (479)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (479)
                       ++         ..+..         ....+.+..|+...    ....+. .+...+..+.                +.+
T Consensus       131 -l~---------~~~~~---------~~~~~~v~~~d~~~----~~~~~~-~~~~~v~~~~----------------~~~  170 (615)
T 1pgu_A          131 -LC---------VVGEG---------RDNFGVFISWDSGN----SLGEVS-GHSQRINACH----------------LKQ  170 (615)
T ss_dssp             -EE---------EEECC---------SSCSEEEEETTTCC----EEEECC-SCSSCEEEEE----------------ECS
T ss_pred             -EE---------EeccC---------CCCccEEEEEECCC----cceeee-cCCccEEEEE----------------ECC
Confidence             11         11100         00113555665211    000000 0111111111                111


Q ss_pred             ccccccccCCCCchhHHHHHhHhcCCCCCCCCC-CcceeEEEecCCCc---cEEEEEEcCC-CcEEEEEeCCCeEEEEEC
Q psy8895         174 STENQLVPTTASNTQIIQQAKAKALPMPKPQWH-APWKLYRVISGHLG---WVRCVAVEPG-NEWFATGSADKIIKVWDL  248 (479)
Q Consensus       174 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~---~v~~~~~~~~-g~~l~sgs~d~~i~iWd~  248 (479)
                      .....++....+....+              |. ...+....+.+|.+   .|.+++|+|+ +++|++++.|+.|++||+
T Consensus       171 ~~~~~l~~~~~d~~v~v--------------wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVF--------------YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             SSSCEEEEEETTTEEEE--------------EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             CCCcEEEEEeCCCcEEE--------------EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            11112222111111000              11 12355667889999   9999999999 999999999999999999


Q ss_pred             CCCceEEEE-e---cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-----------------------
Q psy8895         249 ATGKLKLSL-T---GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS-----------------------  301 (479)
Q Consensus       249 ~~~~~~~~~-~---~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-----------------------  301 (479)
                      .+++.+..+ .   +|...|.+++|+ ++.++++++.|+.|++||+++.+.......                       
T Consensus       237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  315 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL  315 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred             CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence            999999888 6   899999999999 999999999999999999986543211100                       


Q ss_pred             -----------------------------------------------------CCCCCCeEEEEEeCCCCEEEEEeCCCe
Q psy8895         302 -----------------------------------------------------MDSESGIFSMTFDNSGSRLITTEADKT  328 (479)
Q Consensus       302 -----------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~  328 (479)
                                                                           ..+...+.++.| +++..+++++.|+.
T Consensus       316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~  394 (615)
T 1pgu_A          316 SLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDT  394 (615)
T ss_dssp             ETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTE
T ss_pred             ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCC
Confidence                                                                 001122333333 22444455555555


Q ss_pred             EEEEeCCCCCC------------------------------C------------------CCCeEEEEeC-CCcEEEEEC
Q psy8895         329 VKLYKEDDSAT------------------------------E------------------ESHPVITGSH-DCTIRLWDL  359 (479)
Q Consensus       329 i~~~~~~~~~~------------------------------~------------------~~~~l~sgs~-d~~v~iwd~  359 (479)
                      +++|+......                              .                  ....+++++. |+.|++||+
T Consensus       395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~  474 (615)
T 1pgu_A          395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL  474 (615)
T ss_dssp             EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred             EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence            55554321100                              0                  0456778888 999999999


Q ss_pred             CCCeeE-EEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC-CcceEEEEEEcC----------CC-
Q psy8895         360 AAGKSL-CTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG-HNAIINSICVNN----------EG-  425 (479)
Q Consensus       360 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~----------~~-  425 (479)
                      ..++.. ..+..|...|++++|+|++.+|++++.| .+++||..+++.+..+.+ |...|++++|+|          ++ 
T Consensus       475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~  554 (615)
T 1pgu_A          475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED  554 (615)
T ss_dssp             TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred             CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCC
Confidence            876655 5667899999999999999999999877 499999999999999988 999999999999          88 


Q ss_pred             EEEEEeCCCcEEEEecCCC-eEEEE
Q psy8895         426 VLVSGADNGTMCFWDWRTG-YNFQR  449 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~-~~~~~  449 (479)
                      +|++|+.||+|++||++++ ..++.
T Consensus       555 ~l~~~~~dg~i~iw~~~~~~~~~~~  579 (615)
T 1pgu_A          555 LVATGSLDTNIFIYSVKRPMKIIKA  579 (615)
T ss_dssp             EEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             EEEEEcCCCcEEEEECCCCceechh
Confidence            9999999999999999987 45443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-37  Score=327.87  Aligned_cols=385  Identities=11%  Similarity=0.086  Sum_probs=254.5

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT  109 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (479)
                      .||.+.|++++|+|++++||+|+.||+|+|||..+++.+..+. |...|.++.|.+ +.     .++             
T Consensus        14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~-----~L~-------------   73 (902)
T 2oaj_A           14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GI-----YLV-------------   73 (902)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TT-----EEE-------------
T ss_pred             cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CC-----EEE-------------
Confidence            4899999999999999999999999999999998887666554 788899999876 21     111             


Q ss_pred             cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC-chh
Q psy8895         110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS-NTQ  188 (479)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~  188 (479)
                               +...++++++|++...+  ....+.  ....+..                ..+.+.. +.++....+ ...
T Consensus        74 ---------S~s~D~~v~lWd~~~~~--~~~~~~--~~~~V~~----------------v~~sp~g-~~l~sgs~dg~V~  123 (902)
T 2oaj_A           74 ---------VINAKDTVYVLSLYSQK--VLTTVF--VPGKITS----------------IDTDASL-DWMLIGLQNGSMI  123 (902)
T ss_dssp             ---------EEETTCEEEEEETTTCS--EEEEEE--CSSCEEE----------------EECCTTC-SEEEEEETTSCEE
T ss_pred             ---------EEECcCeEEEEECCCCc--EEEEEc--CCCCEEE----------------EEECCCC-CEEEEEcCCCcEE
Confidence                     22345778888865321  110110  0001111                1111111 112111111 111


Q ss_pred             HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecC-------
Q psy8895         189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGH-------  260 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h-------  260 (479)
                      ++.....+......+.   .++....+.+|.+.|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..|       
T Consensus       124 lwd~~~~~~~~~~i~~---~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~  199 (902)
T 2oaj_A          124 VYDIDRDQLSSFKLDN---LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPG  199 (902)
T ss_dssp             EEETTTTEEEEEEECC---HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCC
T ss_pred             EEECCCCccccceecc---ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCC
Confidence            1100000000000000   00000124679999999999996 5789999999999 9999999988888766       


Q ss_pred             -----------CcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC--CC----CC----------CCCCCeEEEEE
Q psy8895         261 -----------VGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ--PG----SM----------DSESGIFSMTF  313 (479)
Q Consensus       261 -----------~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~----~~----------~~~~~i~~~~~  313 (479)
                                 ...|.+++|+|++.+|++++.|++|++||+++++....  ..    ..          .+...|.+++|
T Consensus       200 ~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w  279 (902)
T 2oaj_A          200 GDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW  279 (902)
T ss_dssp             STTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred             cccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence                       46799999999999999999999999999987654321  00    00          11234666666


Q ss_pred             eC----CC-C----------------------------------------------------------------------
Q psy8895         314 DN----SG-S----------------------------------------------------------------------  318 (479)
Q Consensus       314 ~~----~~-~----------------------------------------------------------------------  318 (479)
                      .+    ++ .                                                                      
T Consensus       280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~  359 (902)
T 2oaj_A          280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA  359 (902)
T ss_dssp             EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred             EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence            32    21 1                                                                      


Q ss_pred             ------EEEEEeCCCeEEEEeCCCCC------------------------------------------------------
Q psy8895         319 ------RLITTEADKTVKLYKEDDSA------------------------------------------------------  338 (479)
Q Consensus       319 ------~l~~~~~d~~i~~~~~~~~~------------------------------------------------------  338 (479)
                            .+++++.|+.+++|+.....                                                      
T Consensus       360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~  439 (902)
T 2oaj_A          360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR  439 (902)
T ss_dssp             HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred             CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence                  23333445667777642210                                                      


Q ss_pred             ----CCCCCeEEEEeCCCcEEEEECCCCeeE----EE--Ec-----cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC
Q psy8895         339 ----TEESHPVITGSHDCTIRLWDLAAGKSL----CT--LT-----NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE  402 (479)
Q Consensus       339 ----~~~~~~l~sgs~d~~v~iwd~~~~~~~----~~--~~-----~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~  402 (479)
                          .++...+++|+.|++|++||+.++...    ..  +.     +|...|++++|+|++++||+++.|+ |++|++.+
T Consensus       440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~  519 (902)
T 2oaj_A          440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV  519 (902)
T ss_dssp             CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEE
T ss_pred             cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecC
Confidence                012346899999999999999876421    11  11     7889999999999999999999885 99999876


Q ss_pred             Ce---------------------------------------------EEeeecCCcceEEEEEEcCCCEEEEEeCCCcEE
Q psy8895         403 GK---------------------------------------------FIQNLPGHNAIINSICVNNEGVLVSGADNGTMC  437 (479)
Q Consensus       403 ~~---------------------------------------------~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~  437 (479)
                      ++                                             ++..+.+|.+.|++++|+|||+||+|+.|++|+
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~  599 (902)
T 2oaj_A          520 NQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLM  599 (902)
T ss_dssp             CCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEE
T ss_pred             ccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEE
Confidence            52                                             367788999999999999999999999999999


Q ss_pred             EEecCCCeEEEEEEEeEecCCC-CCceEEeeehhh
Q psy8895         438 FWDWRTGYNFQRLQVRCVSGFP-KPSVFFFFLAFS  471 (479)
Q Consensus       438 lWd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  471 (479)
                      |||++++..+.+.+  | +.+. -....+.+++|+
T Consensus       600 lwd~~~~~~~~~~~--~-~~~~~gh~~~V~sv~Fs  631 (902)
T 2oaj_A          600 LIDRRGPAIIYMEN--I-REISGAQSACVTCIEFV  631 (902)
T ss_dssp             EEETTTTEEEEEEE--G-GGTCSSCCCCEEEEEEE
T ss_pred             EEECCCCeEEEEee--h-hHhccccccceEEEEEE
Confidence            99999887654322  2 4443 344456667776

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.5e-36  Score=315.03  Aligned_cols=228  Identities=24%  Similarity=0.441  Sum_probs=195.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+.+|...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++.++++++.|++|++||+...
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999998643


Q ss_pred             Ccc-cCCCCCCCCCCeEEEEEeCCC--CEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCc
Q psy8895         294 KAP-VQPGSMDSESGIFSMTFDNSG--SRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCT  353 (479)
Q Consensus       294 ~~~-~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~  353 (479)
                      ... .......+...+.++.|+|++  ..+++++.|++|++|+.....                 .++...+++|+.|++
T Consensus       505 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~  584 (694)
T 3dm0_A          505 CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV  584 (694)
T ss_dssp             EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB
T ss_pred             cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence            221 111223456779999999986  589999999999999986542                 134567999999999


Q ss_pred             EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCc-------------------c
Q psy8895         354 IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHN-------------------A  414 (479)
Q Consensus       354 v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~-------------------~  414 (479)
                      |++||+++++.+..+.. ...|.+++|+|++.++++++++.|++||+.+++.+..+..+.                   .
T Consensus       585 i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (694)
T 3dm0_A          585 VLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI  663 (694)
T ss_dssp             CEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred             EEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence            99999999998888754 567999999999999999998899999999998887665331                   1


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .+++++|+|++ +|++|+.||+|++||+.
T Consensus       664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          664 YCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            37889999999 99999999999999975

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.8e-36  Score=283.26  Aligned_cols=216  Identities=22%  Similarity=0.277  Sum_probs=169.8

Q ss_pred             ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      +.+|.+.|.+++|++  ++++|++|+.|++|++||+++++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++|
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence            457889999999976  38999999999999999998874  55678889999999999997  8899999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----e
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----S  364 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~  364 (479)
                      |++............+...+.++.|+|+.......            .........+++|+.|++|++||+++++    .
T Consensus       129 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~------------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~  196 (297)
T 2pm7_B          129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (297)
T ss_dssp             EBCSSSCBCCEEEECCSSCEEEEEECCCC------------------------CCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EecCCCceeeeeeecccCccceEeecCCccccccc------------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE
Confidence            99765321111112456679999999874321000            0011224578999999999999998765    5


Q ss_pred             EEEEccCCCceEEEEEeCCC---cEEEEEcCCc-EEEEeCCCCe---EEeee--cCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         365 LCTLTNHKKSVRSVALHPTL---YMFASASPDN-IKQWKCPEGK---FIQNL--PGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~---~~l~s~s~d~-i~~w~~~~~~---~~~~~--~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ..++.+|...|++++|+|++   .+|++++.|+ |++||..+..   ....+  .+|...|.+++|+|++ +|++++.|+
T Consensus       197 ~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~  276 (297)
T 2pm7_B          197 ESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (297)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTS
T ss_pred             EEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCC
Confidence            67888999999999999984   8899998875 9999987642   12233  5788999999999999 899999999


Q ss_pred             cEEEEecC
Q psy8895         435 TMCFWDWR  442 (479)
Q Consensus       435 ~i~lWd~~  442 (479)
                      +|+||+..
T Consensus       277 ~v~lw~~~  284 (297)
T 2pm7_B          277 KVTLWKEN  284 (297)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEEC
Confidence            99999976

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4.1e-36  Score=295.27  Aligned_cols=237  Identities=26%  Similarity=0.474  Sum_probs=214.6

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ..+.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+.+|...|.+++|+|++.+|++|+.|++|++||++.
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIR  355 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~  355 (479)
                      .+.....  ..+...|.++.|+|++..+++++.|++|++|+......                 +++..+++|+.|++|+
T Consensus       182 ~~~~~~~--~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 FECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             SCEEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CceeEEE--cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            6554332  34667899999999999999999999999999865421                 3456799999999999


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCC--------------------CcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPT--------------------LYMFASASPDN-IKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~--------------------~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~  414 (479)
                      +||+.+++....+.+|...|.+++|+|+                    +.++++++.|+ |++||+.+++++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            9999999999999999999999999996                    56788888775 99999999999999999999


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .|.+++|+|++ +|++|+.||+|++||++++.+++.+.
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~  377 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN  377 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence            99999999998 89999999999999999998776654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-36  Score=295.53  Aligned_cols=305  Identities=13%  Similarity=0.189  Sum_probs=246.1

Q ss_pred             CcccceEEEEEccCCc-eEEEecCCCeEEEEee----cccc------eEeeecc----------cccceEEEEecCCCCc
Q psy8895          31 GHLSSVNTISLHPTID-VLITAGRDSTARVWDV----RTKA------NVYTLTG----------HTNTIASVVTQASEPQ   89 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~-~laSgs~D~~vriWd~----~t~~------~~~~~~~----------h~~~v~~~~~~~~~~~   89 (479)
                      .|.++|++++|+|+|+ +||+|+.|++|++||+    .+++      ....+..          |.+.+.++.|.++...
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  122 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS  122 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence            4669999999999999 9999999999999999    8887      4444443          6778888887664321


Q ss_pred             cccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccc
Q psy8895          90 VGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQ  169 (479)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (479)
                                     ++            ....++.+++|+..                                     
T Consensus       123 ---------------l~------------~~~~dg~i~i~~~~-------------------------------------  138 (425)
T 1r5m_A          123 ---------------IV------------TGVENGELRLWNKT-------------------------------------  138 (425)
T ss_dssp             ---------------EE------------EEETTSCEEEEETT-------------------------------------
T ss_pred             ---------------EE------------EEeCCCeEEEEeCC-------------------------------------
Confidence                           01            11123445555411                                     


Q ss_pred             ccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC
Q psy8895         170 ELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA  249 (479)
Q Consensus       170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~  249 (479)
                                                             .+....+.+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       139 ---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~  179 (425)
T 1r5m_A          139 ---------------------------------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI  179 (425)
T ss_dssp             ---------------------------------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred             ---------------------------------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence                                                   01123456789999999999999999999999999999999


Q ss_pred             CCceEEEEecCCcC---------------EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEe
Q psy8895         250 TGKLKLSLTGHVGS---------------VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFD  314 (479)
Q Consensus       250 ~~~~~~~~~~h~~~---------------v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~  314 (479)
                      +++....+..+...               +.+++|++++ .+++++.|+.|++||++..+.....  ..+...+.++.|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~  256 (425)
T 1r5m_A          180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL--IGHHGPISVLEFN  256 (425)
T ss_dssp             TTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE--CCCSSCEEEEEEE
T ss_pred             CCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee--ccCCCceEEEEEC
Confidence            99998888888776               8999999986 5788999999999999876544322  2456789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         315 NSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       315 ~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      |++..+++++.|+.+++|+......                 ++. .+++++.|+.|++||+++++.+..+..|...|.+
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~  335 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFA  335 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEE
Confidence            9999999999999999999765321                 123 7899999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEcCC-cEEEEeCCCCe--------------------EEeeecCCcc--eEEEEEEcCCC-EEEEEeCC
Q psy8895         378 VALHPTLYMFASASPD-NIKQWKCPEGK--------------------FIQNLPGHNA--IINSICVNNEG-VLVSGADN  433 (479)
Q Consensus       378 i~~~~~~~~l~s~s~d-~i~~w~~~~~~--------------------~~~~~~~h~~--~v~~l~~~~~~-~l~sg~~d  433 (479)
                      ++|+|++.++++++.+ .|++|++.+++                    .+..+.+|..  .|.+++|+|++ +|++++.|
T Consensus       336 ~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  415 (425)
T 1r5m_A          336 GRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSL  415 (425)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESS
T ss_pred             EEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecC
Confidence            9999999999998877 59999998888                    8889999976  99999999998 89999999


Q ss_pred             CcEEEEecC
Q psy8895         434 GTMCFWDWR  442 (479)
Q Consensus       434 g~i~lWd~~  442 (479)
                      |.|++||++
T Consensus       416 g~i~iw~~~  424 (425)
T 1r5m_A          416 QEGSVVAIP  424 (425)
T ss_dssp             SCCEEEECC
T ss_pred             ceEEEEeec
Confidence            999999985

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6e-36  Score=334.01  Aligned_cols=338  Identities=19%  Similarity=0.321  Sum_probs=269.0

Q ss_pred             EEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecc
Q psy8895          11 LSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT   64 (479)
Q Consensus        11 ~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t   64 (479)
                      ..+.+|.+.|.++.                          .+..+.+|.+.|.+++|+|+|++||||+.|++|+|||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            45778888887764                          2556789999999999999999999999999999999999


Q ss_pred             cceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhh
Q psy8895          65 KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQE  144 (479)
Q Consensus        65 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  144 (479)
                      ++.+.++.+|...+.++.|.++....             ++            .+...++.+++|+....          
T Consensus       689 ~~~~~~~~~~~~~v~~~~~~~~~~~~-------------~l------------~sg~~d~~v~vwd~~~~----------  733 (1249)
T 3sfz_A          689 GKLVHTYDEHSEQVNCCHFTNKSNHL-------------LL------------ATGSNDFFLKLWDLNQK----------  733 (1249)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSCC-------------EE------------EEEETTSCEEEEETTSS----------
T ss_pred             CceEEEEcCCCCcEEEEEEecCCCce-------------EE------------EEEeCCCeEEEEECCCc----------
Confidence            99999999999999999987643210             11            11234466777765321          


Q ss_pred             hhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEE
Q psy8895         145 VQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRC  224 (479)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  224 (479)
                                                                                       +....+.+|.+.|.+
T Consensus       734 -----------------------------------------------------------------~~~~~~~~h~~~v~~  748 (1249)
T 3sfz_A          734 -----------------------------------------------------------------ECRNTMFGHTNSVNH  748 (1249)
T ss_dssp             -----------------------------------------------------------------SEEEEECCCSSCEEE
T ss_pred             -----------------------------------------------------------------chhheecCCCCCEEE
Confidence                                                                             011234456666666


Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCc----------------------------------------------------
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGK----------------------------------------------------  252 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~----------------------------------------------------  252 (479)
                      ++|+|+++++++++.|+.|++||+.+++                                                    
T Consensus       749 ~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~  828 (1249)
T 3sfz_A          749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHT  828 (1249)
T ss_dssp             EEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTT
T ss_pred             EEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecC
Confidence            6666666666666666666666655443                                                    


Q ss_pred             --eEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895         253 --LKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV  329 (479)
Q Consensus       253 --~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  329 (479)
                        ....+. +|...|.+++|+|++.++++++.|+.|++||+.+.......  ..+...|.++.|+|++..+++++.|+.+
T Consensus       829 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--~~h~~~v~~v~~spdg~~l~s~s~dg~v  906 (1249)
T 3sfz_A          829 SGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--RGHLSWVHGVMFSPDGSSFLTASDDQTI  906 (1249)
T ss_dssp             CCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--CCCccceEEEEECCCCCEEEEEeCCCeE
Confidence              333332 78889999999999999999999999999999876544332  3466789999999999999999999999


Q ss_pred             EEEeCCCC------------------------------------------------------CCCCCCeEEEEeCCCcEE
Q psy8895         330 KLYKEDDS------------------------------------------------------ATEESHPVITGSHDCTIR  355 (479)
Q Consensus       330 ~~~~~~~~------------------------------------------------------~~~~~~~l~sgs~d~~v~  355 (479)
                      ++|+....                                                      ..+....+++|+.||.|+
T Consensus       907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~  986 (1249)
T 3sfz_A          907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK  986 (1249)
T ss_dssp             EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCE
T ss_pred             EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEE
Confidence            99985310                                                      012346789999999999


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCC
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNG  434 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg  434 (479)
                      +||+.+++.+..+.+|...|++++|+|++.++++++.|. +++|+..+++... +.+|...|.++++++++.+++++.||
T Consensus       987 i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg 1065 (1249)
T 3sfz_A          987 IIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDG 1065 (1249)
T ss_dssp             EEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSS
T ss_pred             EEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCC
Confidence            999999999999999999999999999999999998775 9999999988764 56899999999999999999999999


Q ss_pred             cEEEEecCCCeEEEEEE
Q psy8895         435 TMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~~  451 (479)
                      +|++||+.++...+.+.
T Consensus      1066 ~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1066 TVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             EEEEEETTTTCCCEEEE
T ss_pred             cEEEEECCCCceeEEEc
Confidence            99999999998776654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-35  Score=279.27  Aligned_cols=295  Identities=19%  Similarity=0.224  Sum_probs=237.4

Q ss_pred             eEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      ..+.+++.+|.++|++++| |++++||+|+.||+|++||+.+++....+..|...+.++.|.++...     ++      
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~------   75 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKEL-----LL------   75 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTE-----EE------
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCE-----EE------
Confidence            3556778899999999999 99999999999999999999999999999999999999998775421     11      


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                      ....++.+++|++....                                               
T Consensus        76 ----------------~~~~dg~i~~~~~~~~~-----------------------------------------------   92 (313)
T 3odt_A           76 ----------------FGGKDTMINGVPLFATS-----------------------------------------------   92 (313)
T ss_dssp             ----------------EEETTSCEEEEETTCCT-----------------------------------------------
T ss_pred             ----------------EecCCCeEEEEEeeecC-----------------------------------------------
Confidence                            11233455555432100                                               


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                                               ..+....+.+|...|.+++|  +++++++++.|+.|++||  .++....+..|..
T Consensus        93 -------------------------~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~  143 (313)
T 3odt_A           93 -------------------------GEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA  143 (313)
T ss_dssp             -------------------------TSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred             -------------------------CCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence                                     00011245679999999999  578999999999999999  6778888999999


Q ss_pred             CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCC
Q psy8895         263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE  341 (479)
Q Consensus       263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~  341 (479)
                      .+.+++++| ++.++++++.|+.|++||........   ...+...+.++.|+|++.                       
T Consensus       144 ~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~~~~~~-----------------------  197 (313)
T 3odt_A          144 SVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTF---SGIHNDVVRHLAVVDDGH-----------------------  197 (313)
T ss_dssp             CEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEE---CSSCSSCEEEEEEEETTE-----------------------
T ss_pred             ceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEE---eccCcccEEEEEEcCCCe-----------------------
Confidence            999999988 89999999999999999954322111   122556788888887654                       


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICV  421 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~  421 (479)
                         +++++.|+.|++||+++++.+..+..|...|++++|+|++.+++++.++.|++||..+++....+..|...|.++++
T Consensus       198 ---~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~  274 (313)
T 3odt_A          198 ---FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDC  274 (313)
T ss_dssp             ---EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEE
T ss_pred             ---EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEE
Confidence               45777888899999999999999999999999999999996555555556999999999999999999999999999


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         422 NNEGVLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       422 ~~~~~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|++.+++++.||.|++||++++......
T Consensus       275 ~~~~~~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          275 MSNGDIIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             CTTSCEEEEETTSCEEEEESCGGGCCC--
T ss_pred             ccCCCEEEEeCCCcEEEEeCCCCceeehh
Confidence            99998888999999999999988665443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.2e-35  Score=280.15  Aligned_cols=238  Identities=24%  Similarity=0.392  Sum_probs=209.3

Q ss_pred             eEEEecCCCccEEEEEEcCC----CcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         211 LYRVISGHLGWVRCVAVEPG----NEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~----g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      +.+.+.+|.+.|.+++|+|+    +++|+||+.|++|++||+.+++.  ...+.+|...|.++++++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            34567799999999999874    67999999999999999987754  4578999999999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVIT  347 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~s  347 (479)
                      |++||+++++.....  ..+...+.+++|+|+++.+++++.++.+++|+.....                 .++...+++
T Consensus       104 i~lWd~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLENGKQIKSI--DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTTTEEEEEE--ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCEEEEE--eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            999999877654322  1234567789999999999999999999999986542                 134568999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      |+.|++|++||+++++.+.++++|...|++++|+|++.+|++++.|. |++||..+++....+.+|...|.+++|+|++ 
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT  261 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence            99999999999999999999999999999999999999999999885 9999999999999999999999999999998 


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         426 VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|++|+.|++|++||++++++++.+
T Consensus       262 ~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          262 HFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            9999999999999999999887765

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-35  Score=281.43  Aligned_cols=227  Identities=19%  Similarity=0.312  Sum_probs=196.3

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC-----CcEEEEECC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLE  291 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~  291 (479)
                      +|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...+.+++|+|++.++++++.+     +.|++||++
T Consensus        72 ~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~  150 (369)
T 3zwl_B           72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIE  150 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEE
T ss_pred             hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEec
Confidence            466778899999999999999999999999999999988887 88899999999999999999998     999999987


Q ss_pred             CCCcccC-----------CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC-C-----------------CCCC
Q psy8895         292 YNKAPVQ-----------PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS-A-----------------TEES  342 (479)
Q Consensus       292 ~~~~~~~-----------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~-~-----------------~~~~  342 (479)
                      .......           .........+.++.|+|++..+++++.++.|.+|+.... .                 .++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  230 (369)
T 3zwl_B          151 RDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL  230 (369)
T ss_dssp             ECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS
T ss_pred             CCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC
Confidence            5432211           000111227999999999999999999999999998762 1                 1245


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---------------cEEEEeCCCCeEEe
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---------------NIKQWKCPEGKFIQ  407 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---------------~i~~w~~~~~~~~~  407 (479)
                      ..+++++.|+.|++||+++++.+..+. +...+.+++|+|++..+++++.+               .+.+||..+++.+.
T Consensus       231 ~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  309 (369)
T 3zwl_B          231 TYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIG  309 (369)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEE
T ss_pred             CEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchh
Confidence            679999999999999999999988886 77889999999999988887655               58999999999999


Q ss_pred             eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      .+.+|...|.+++++|++ +|++++.||.|++|++++++
T Consensus       310 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          310 RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            999999999999999998 89999999999999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.1e-34  Score=288.27  Aligned_cols=304  Identities=26%  Similarity=0.459  Sum_probs=248.9

Q ss_pred             eeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          26 IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      .+.+.||.+.|.. +++++|++|+||+.||+|++||+.+++.+.++.+|...|.++.+...       .           
T Consensus       111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-------~-----------  171 (445)
T 2ovr_B          111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-------I-----------  171 (445)
T ss_dssp             CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-------E-----------
T ss_pred             eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCC-------E-----------
Confidence            3457899987643 35567899999999999999999999999999999999998887521       1           


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                 +.+...++++++|+....                                                   
T Consensus       172 -----------l~s~~~dg~i~vwd~~~~---------------------------------------------------  189 (445)
T 2ovr_B          172 -----------IISGSTDRTLKVWNAETG---------------------------------------------------  189 (445)
T ss_dssp             -----------EEEEETTSCEEEEETTTT---------------------------------------------------
T ss_pred             -----------EEEEeCCCeEEEEECCcC---------------------------------------------------
Confidence                       111234467777764310                                                   


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEE
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR  265 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~  265 (479)
                                              +....+.+|...|.+++++  ++.+++|+.|+.|++||+.+++....+.+|...|.
T Consensus       190 ------------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~  243 (445)
T 2ovr_B          190 ------------------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR  243 (445)
T ss_dssp             ------------------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred             ------------------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE
Confidence                                    1123456789999999995  67899999999999999999999999999999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT------  339 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------  339 (479)
                      ++++  ++.++++++.|+.|++||+++.+.....  ..+...+.++.+  ++..+++++.|+.|++|+......      
T Consensus       244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG  317 (445)
T ss_dssp             EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEE--CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEe--cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC
Confidence            9999  6778999999999999999876544332  235677889988  678999999999999999875431      


Q ss_pred             ---------CCCCeEEEEeCCCcEEEEECCCCeeEEEEcc---CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895         340 ---------EESHPVITGSHDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI  406 (479)
Q Consensus       340 ---------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~  406 (479)
                               .....+++|+.|+.|++||+++++.+.++..   |...|++++|+  +.++++++.| .|++||..+++.+
T Consensus       318 ~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~  395 (445)
T 2ovr_B          318 HQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFI  395 (445)
T ss_dssp             CCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred             CcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCcee
Confidence                     1245789999999999999999999999876   88899999996  4677777766 5999999999998


Q ss_pred             eee-----cCCcceEEEEEEcCCC-EEEEEeCCCc----EEEEecCCC
Q psy8895         407 QNL-----PGHNAIINSICVNNEG-VLVSGADNGT----MCFWDWRTG  444 (479)
Q Consensus       407 ~~~-----~~h~~~v~~l~~~~~~-~l~sg~~dg~----i~lWd~~~~  444 (479)
                      ..+     .+|.+.|++++++|++ .+++|+.||+    |.+||+...
T Consensus       396 ~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          396 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             eeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence            877     4788999999999999 7899999998    999998753

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.4e-35  Score=285.90  Aligned_cols=226  Identities=15%  Similarity=0.258  Sum_probs=194.5

Q ss_pred             CCccEEEEEEcCC----CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEECCC
Q psy8895         218 HLGWVRCVAVEPG----NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       218 h~~~v~~~~~~~~----g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      |.+.|.+++|+|+    +++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||++.
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            5667899999998    67999999999999999999999999999999999999999 899999999999999999987


Q ss_pred             CCcccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------------
Q psy8895         293 NKAPVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------------  339 (479)
Q Consensus       293 ~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------------  339 (479)
                      .+...... ...+...+.++.|+|++..+++++.|+.|++|+......                                
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence            66543321 134667899999999999999999999999999764210                                


Q ss_pred             ---C--------CCCeEEEEeCCCcEEEEECCCCee--------------EEEEccCCCceEEEEEeCC--CcEEEEEcC
Q psy8895         340 ---E--------ESHPVITGSHDCTIRLWDLAAGKS--------------LCTLTNHKKSVRSVALHPT--LYMFASASP  392 (479)
Q Consensus       340 ---~--------~~~~l~sgs~d~~v~iwd~~~~~~--------------~~~~~~h~~~v~~i~~~~~--~~~l~s~s~  392 (479)
                         .        ....+++++.|+.|++||+.+.+.              +..+..|...|++++|+|+  +.+|++++.
T Consensus       228 ~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~  307 (366)
T 3k26_A          228 DIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQ  307 (366)
T ss_dssp             SSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECT
T ss_pred             cCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEec
Confidence               0        045789999999999999987643              7788899999999999999  999999987


Q ss_pred             Cc-EEEEeCCCCeE----EeeecCC--cceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         393 DN-IKQWKCPEGKF----IQNLPGH--NAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       393 d~-i~~w~~~~~~~----~~~~~~h--~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      |+ |++||+.+++.    ...+.+|  ...|++++|+|++ +|++++.||.|++||+.+
T Consensus       308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            75 99999988753    4477777  7899999999998 899999999999999864

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-35  Score=286.32  Aligned_cols=207  Identities=14%  Similarity=0.144  Sum_probs=167.0

Q ss_pred             CCCccEEEEEEcCCCcEEEE--EeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFAT--GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~s--gs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .+...+.+++|+|||+++++  ++.|++|+|||+++++.+..+. |...|.+++|+||++++++++.| .+++|+..+++
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence            34567899999999998765  4478999999999999988876 77889999999999999998755 56677666555


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEcc
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTN  370 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~  370 (479)
                      .........+...+.+++|+|++..+++++.++..                     ..++++||+.....    ...+.+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~---------------------~~~i~~~~~~~~~~~~~~~~~~~~  267 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGK---------------------GIVLTKISIKSGNTSVLRSKQVTN  267 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSC---------------------CEEEEEEEEETTEEEEEEEEEEES
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcc---------------------eeEEeecccccceecceeeeeecC
Confidence            44332233456678999999999888777655421                     11456677665432    346778


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeE
Q psy8895         371 HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~  446 (479)
                      |...|++++|+|++.+||+++.|. |++||..+++++.. +.+|...|++++|+||+ +|||||.|++|||||+..++.
T Consensus       268 ~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~  346 (365)
T 4h5i_A          268 RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYA  346 (365)
T ss_dssp             SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTT
T ss_pred             CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence            999999999999999999999885 99999999999887 47999999999999999 899999999999999987653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.5e-36  Score=282.52  Aligned_cols=221  Identities=19%  Similarity=0.265  Sum_probs=170.7

Q ss_pred             ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      +.+|.+.|.+++|++  ++++|++|+.|++|++||+++++  ....+.+|...|.+++|+|+  +.+|++++.|++|++|
T Consensus        53 l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lw  132 (316)
T 3bg1_A           53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL  132 (316)
T ss_dssp             EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEE
T ss_pred             EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEE
Confidence            446888999999975  48999999999999999999874  56678899999999999998  7899999999999999


Q ss_pred             ECCCCCcc-cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC---ee
Q psy8895         289 DLEYNKAP-VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG---KS  364 (479)
Q Consensus       289 d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~---~~  364 (479)
                      |++..... .......+...+.++.|+|+...       +.+ +.............+++|+.|++|++||++..   ++
T Consensus       133 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  204 (316)
T 3bg1_A          133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP-------GSL-IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE  204 (316)
T ss_dssp             EECSSSCEEECCBTTSSSSCBCCCEECCCCCC--------------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred             ecCCCCCcceeeeeccccCCcceEEEccccCC-------ccc-cccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence            99764321 11111235567888899886421       000 00000111122457999999999999999765   46


Q ss_pred             EEEEccCCCceEEEEEeCCC----cEEEEEcCCc-EEEEeCCCC---e-EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         365 LCTLTNHKKSVRSVALHPTL----YMFASASPDN-IKQWKCPEG---K-FIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~----~~l~s~s~d~-i~~w~~~~~---~-~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      +.++.+|...|++++|+|++    .+|++++.|. |++|+..+.   + ....+..|...|++++|+|++ +|++++.|+
T Consensus       205 ~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            77788999999999999986    7889988875 999998762   1 223456788999999999998 899999999


Q ss_pred             cEEEEecCC
Q psy8895         435 TMCFWDWRT  443 (479)
Q Consensus       435 ~i~lWd~~~  443 (479)
                      +|++|+...
T Consensus       285 ~v~lw~~~~  293 (316)
T 3bg1_A          285 KVTLWKESV  293 (316)
T ss_dssp             CEEEEEECT
T ss_pred             eEEEEEECC
Confidence            999999763

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-34  Score=310.66  Aligned_cols=372  Identities=13%  Similarity=0.109  Sum_probs=242.1

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT  109 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (479)
                      .+|..+|++|+|+| |++|||++.|++|+|||+++++.+.++. |...|.++.|.++...     ++             
T Consensus        55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~-----l~-------------  114 (902)
T 2oaj_A           55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDW-----ML-------------  114 (902)
T ss_dssp             CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSE-----EE-------------
T ss_pred             cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCE-----EE-------------
Confidence            35888999999999 8899999999999999999999988886 6678899988765432     11             


Q ss_pred             cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895         110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI  189 (479)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  189 (479)
                               ....++++++|++...+...+. +...... .      .....+...+....+.|.....++....+...+
T Consensus       115 ---------sgs~dg~V~lwd~~~~~~~~~~-i~~~~~~-~------~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~vl  177 (902)
T 2oaj_A          115 ---------IGLQNGSMIVYDIDRDQLSSFK-LDNLQKS-S------FFPAARLSPIVSIQWNPRDIGTVLISYEYVTLT  177 (902)
T ss_dssp             ---------EEETTSCEEEEETTTTEEEEEE-ECCHHHH-H------TCSSSCCCCCCEEEEETTEEEEEEEECSSCEEE
T ss_pred             ---------EEcCCCcEEEEECCCCccccce-ecccccc-c------cccccCCCCeEEEEEccCCCCEEEEEeCCCcEE
Confidence                     1234567888876532110000 0000000 0      000000011111111111111122211111111


Q ss_pred             HHHHhHhcCCCCCCCCCCcceeEEEe------------------cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC
Q psy8895         190 IQQAKAKALPMPKPQWHAPWKLYRVI------------------SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG  251 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~  251 (479)
                      +.. +             ..+....+                  .+|...|.+++|+|+|++|++|+.|++|++||++++
T Consensus       178 Wd~-~-------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          178 YSL-V-------------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             EET-T-------------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             EEC-C-------------CCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence            100 0             01112222                  345688999999999999999999999999999998


Q ss_pred             ceEEE--E---ec-------------CCcCEEEEEEc----CCC-CEEEEEECC-----CcEEEEE--------------
Q psy8895         252 KLKLS--L---TG-------------HVGSVRGLTVS----PRH-PYLFSCGDD-----RTVKCWD--------------  289 (479)
Q Consensus       252 ~~~~~--~---~~-------------h~~~v~~v~~~----~~~-~~l~s~~~d-----~~i~~wd--------------  289 (479)
                      +++..  +   ..             |...|.+++|+    |++ .++++|+.|     +.+++|+              
T Consensus       244 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~  323 (902)
T 2oaj_A          244 HMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEG  323 (902)
T ss_dssp             CEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHH
T ss_pred             cEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhh
Confidence            87653  2   12             34478999994    443 345555544     2455555              


Q ss_pred             ---------------------------------------------------------CCCCCcccC-----CCCCCCCCC
Q psy8895         290 ---------------------------------------------------------LEYNKAPVQ-----PGSMDSESG  307 (479)
Q Consensus       290 ---------------------------------------------------------~~~~~~~~~-----~~~~~~~~~  307 (479)
                                                                               +..+.....     .....+...
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~  403 (902)
T 2oaj_A          324 MKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPL  403 (902)
T ss_dssp             HHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTB
T ss_pred             hhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCC
Confidence                                                                     321110000     000000122


Q ss_pred             eEE----------------------------------EEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895         308 IFS----------------------------------MTFDNSGSRLITTEADKTVKLYKEDDSAT--------------  339 (479)
Q Consensus       308 i~~----------------------------------~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------  339 (479)
                      +.+                                  ++|+|+++.+++++.|++|++||......              
T Consensus       404 v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~  483 (902)
T 2oaj_A          404 ATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTL  483 (902)
T ss_dssp             EEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHT
T ss_pred             eeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhc
Confidence            333                                  34567888999999999999999754321              


Q ss_pred             --------------CCCCeEEEEeCCCcEEEEECCCC-------------------------------------------
Q psy8895         340 --------------EESHPVITGSHDCTIRLWDLAAG-------------------------------------------  362 (479)
Q Consensus       340 --------------~~~~~l~sgs~d~~v~iwd~~~~-------------------------------------------  362 (479)
                                    +++..|++|+.|++|++||+.++                                           
T Consensus       484 ~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (902)
T 2oaj_A          484 NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQ  563 (902)
T ss_dssp             TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSE
T ss_pred             CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCC
Confidence                          23567999999999999999765                                           


Q ss_pred             --eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEe-----eec-CCcceEEEEEEc-----CCC---
Q psy8895         363 --KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQ-----NLP-GHNAIINSICVN-----NEG---  425 (479)
Q Consensus       363 --~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~-----~~~-~h~~~v~~l~~~-----~~~---  425 (479)
                        +++.++.+|.+.|++++|+|++ +||+++.|. |++||+.++..+.     .+. +|.+.|++++|+     ||+   
T Consensus       564 g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~  642 (902)
T 2oaj_A          564 GFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSS  642 (902)
T ss_dssp             EEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEE
T ss_pred             ccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcc
Confidence              2467888999999999999999 999999886 9999998877654     343 899999999999     884   


Q ss_pred             -EEEEEeCCCcEEEEec---CCCeEEEEEEEe
Q psy8895         426 -VLVSGADNGTMCFWDW---RTGYNFQRLQVR  453 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~---~~~~~~~~~~~~  453 (479)
                       +|++|+.|++|++||+   .+|.....+.-.
T Consensus       643 ~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~  674 (902)
T 2oaj_A          643 ILMVCGTDMGEVITYKILPASGGKFDVQLMDI  674 (902)
T ss_dssp             EEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred             eEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence             8999999999999999   788877665433

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.4e-34  Score=299.05  Aligned_cols=365  Identities=17%  Similarity=0.211  Sum_probs=262.9

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeeccc----ceEeeecccccc-eEEEEecC--CCCccccceEEeccccE
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK----ANVYTLTGHTNT-IASVVTQA--SEPQVGTKTVLLESCER  102 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~----~~~~~~~~h~~~-v~~~~~~~--~~~~~~~~~~~~~~~~~  102 (479)
                      ..|.+.|.+++|+|+|++||+++ |+.|+|||++++    +....+.+|... |.++.|.+  +...     ++      
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-----l~------   82 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-----LC------   82 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-----EE------
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-----EE------
Confidence            47899999999999999999998 899999999999    889999999999 99999987  5421     11      


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                      ....++.+++|++........     ........  +.    .+...+....+.+. ...++..
T Consensus        83 ----------------s~~~dg~v~vw~~~~~~~~~~-----~~~~~~~~--~~----~~~~~v~~~~~s~~-~~~l~~~  134 (615)
T 1pgu_A           83 ----------------SGDESGKVIVWGWTFDKESNS-----VEVNVKSE--FQ----VLAGPISDISWDFE-GRRLCVV  134 (615)
T ss_dssp             ----------------EEETTSEEEEEEEEEEGGGTE-----EEEEEEEE--EE----CCSSCEEEEEECTT-SSEEEEE
T ss_pred             ----------------EecCCCEEEEEeCCCCccccc-----ccccccch--hh----cccccEEEEEEeCC-CCEEEEe
Confidence                            122346778887642100000     00000000  00    00001111111111 1122221


Q ss_pred             CCCc---hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEe
Q psy8895         183 TASN---TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLT  258 (479)
Q Consensus       183 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~  258 (479)
                      ....   ..+.             .|. ..+....+.+|...|.+++|+|+++ .+++++.|+.|++||+.+++....+.
T Consensus       135 ~~~~~~~~~v~-------------~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~  200 (615)
T 1pgu_A          135 GEGRDNFGVFI-------------SWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR  200 (615)
T ss_dssp             ECCSSCSEEEE-------------ETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC
T ss_pred             ccCCCCccEEE-------------EEE-CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec
Confidence            1110   1110             122 2234567889999999999999998 89999999999999999999999999


Q ss_pred             cCCc---CEEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy8895         259 GHVG---SVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKLY  332 (479)
Q Consensus       259 ~h~~---~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~  332 (479)
                      +|..   .|.+++|+|+ +.++++++.|+.|++||+++.+........  .+...+.++.|+ ++..+++++.|+.+++|
T Consensus       201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~w  279 (615)
T 1pgu_A          201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVW  279 (615)
T ss_dssp             SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEE
T ss_pred             ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEE
Confidence            9999   9999999999 999999999999999999877654332111  567789999999 99999999999999999


Q ss_pred             eCCCCCC--------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC---------
Q psy8895         333 KEDDSAT--------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT---------  383 (479)
Q Consensus       333 ~~~~~~~--------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~---------  383 (479)
                      +......                    .....+++++.|+.|++||+.+++++..+.+|...|++++| |+         
T Consensus       280 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~  358 (615)
T 1pgu_A          280 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGR  358 (615)
T ss_dssp             ETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSC
T ss_pred             ECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCe
Confidence            9875321                    13457899999999999999988888888777666655554 32         


Q ss_pred             --------------------------------------------------------------------------------
Q psy8895         384 --------------------------------------------------------------------------------  383 (479)
Q Consensus       384 --------------------------------------------------------------------------------  383 (479)
                                                                                                      
T Consensus       359 i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  438 (615)
T 1pgu_A          359 IMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD  438 (615)
T ss_dssp             EEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence                                                                                            


Q ss_pred             -----------------CcEEEEEcC-C-cEEEEeCCCCeEE-eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         384 -----------------LYMFASASP-D-NIKQWKCPEGKFI-QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       384 -----------------~~~l~s~s~-d-~i~~w~~~~~~~~-~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                                       +.++++++. + .+++||..+++.. ..+.+|...|.+++++|++ +|++++.||.|++||++
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  518 (615)
T 1pgu_A          439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ  518 (615)
T ss_dssp             EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence                             223333333 3 3666666665554 6677899999999999998 99999999999999999


Q ss_pred             CCeEEEEE
Q psy8895         443 TGYNFQRL  450 (479)
Q Consensus       443 ~~~~~~~~  450 (479)
                      +++.+..+
T Consensus       519 ~~~~~~~~  526 (615)
T 1pgu_A          519 SREVKTSR  526 (615)
T ss_dssp             TTEEEECC
T ss_pred             CCcceeEe
Confidence            99876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.4e-35  Score=289.75  Aligned_cols=304  Identities=13%  Similarity=0.130  Sum_probs=234.2

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc------eEeeecccccceEEEEecCCCCccccceEEe
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA------NVYTLTGHTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      .+.+.+.+|.++|++++|+|  ++||+|+.||+|+|||+.+++      .+..+.+|...|.++.|.++....+...   
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~---   81 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL---   81 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE---
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccc---
Confidence            45667899999999999999  899999999999999999988      7888999999999998865400000000   


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                          . +++            ....++.+++|++...+.                                         
T Consensus        82 ----~-~l~------------s~~~dg~i~iw~~~~~~~-----------------------------------------  103 (397)
T 1sq9_A           82 ----C-LVA------------TTSFSGDLLFYRITREDE-----------------------------------------  103 (397)
T ss_dssp             ----E-EEE------------EEETTSCEEEEEEEECTT-----------------------------------------
T ss_pred             ----c-EEE------------EEcCCCCEEEEEccCCcc-----------------------------------------
Confidence                0 111            112346677776432100                                         


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCC-----CccEEEEEEc----CCCcE-EEEEeCCCeEEEEE
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGH-----LGWVRCVAVE----PGNEW-FATGSADKIIKVWD  247 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~g~~-l~sgs~d~~i~iWd  247 (479)
                                                   ........+.+|     ...|.+++|+    |++++ |++++.|+.|++||
T Consensus       104 -----------------------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd  154 (397)
T 1sq9_A          104 -----------------------------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWK  154 (397)
T ss_dssp             -----------------------------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEE
T ss_pred             -----------------------------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEe
Confidence                                         000012234456     5889999999    99999 99999999999999


Q ss_pred             CCC------CceEE-----EE-------ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC-CCC---C
Q psy8895         248 LAT------GKLKL-----SL-------TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS-MDS---E  305 (479)
Q Consensus       248 ~~~------~~~~~-----~~-------~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~---~  305 (479)
                      +.+      ++.+.     .+       ..|...|.+++|+|++ ++++++.|+.|++||++..+....... ..+   .
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~  233 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNS  233 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCC
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccC
Confidence            988      65555     66       4488899999999999 999999999999999987654432211 113   6


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCC---CcEEEEECCCCeeEEEEcc------------
Q psy8895         306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHD---CTIRLWDLAAGKSLCTLTN------------  370 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d---~~v~iwd~~~~~~~~~~~~------------  370 (479)
                      ..+.++.|+|++..++                         +++.|   +.|++||+++++.+..+..            
T Consensus       234 ~~i~~i~~~~~~~~l~-------------------------~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          234 NSIRSVKFSPQGSLLA-------------------------IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             CCEEEEEECSSTTEEE-------------------------EEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             CccceEEECCCCCEEE-------------------------EEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence            7899999998877654                         55556   7788888888888888888            


Q ss_pred             -CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeec------CC---------------cceEEEEEEcCCC--
Q psy8895         371 -HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLP------GH---------------NAIINSICVNNEG--  425 (479)
Q Consensus       371 -h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~------~h---------------~~~v~~l~~~~~~--  425 (479)
                       |...|.+++|+|++.+|++++.|. |++||+.+++.+..+.      +|               ...|.+++++|++  
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~  368 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR  368 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence             999999999999999999998775 9999999999999998      88               9999999999995  


Q ss_pred             ---------EEEEEeCCCcEEEEecCCCe
Q psy8895         426 ---------VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       426 ---------~l~sg~~dg~i~lWd~~~~~  445 (479)
                               +|++++.||.|++||+++|.
T Consensus       369 ~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          369 SGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             BSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             ccccccccceEEEecCCCcEEEEEcCCCC
Confidence                     89999999999999998863

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=3.7e-35  Score=285.72  Aligned_cols=293  Identities=17%  Similarity=0.251  Sum_probs=219.8

Q ss_pred             eEEeeecCCcccceEEEEEccCC-ceEEEecCCCeEEEEeecccceEeeec--ccccceEEEEecCCCCccccceEEecc
Q psy8895          23 LTVIRHYHGHLSSVNTISLHPTI-DVLITAGRDSTARVWDVRTKANVYTLT--GHTNTIASVVTQASEPQVGTKTVLLES   99 (479)
Q Consensus        23 ~~~~~~~~gH~~~V~~l~~sp~g-~~laSgs~D~~vriWd~~t~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~   99 (479)
                      ..+.+.+.+|.+.|++++|+|++ ++||+|+.|++|+|||+.+++....+.  +|...|.++.|.+.+..          
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----------  132 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN----------  132 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE----------
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC----------
Confidence            45667789999999999999999 999999999999999999888777665  69999999998663211          


Q ss_pred             ccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccc
Q psy8895         100 CERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQL  179 (479)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  179 (479)
                          .++            +...++.+++|++....              .                             
T Consensus       133 ----~l~------------s~~~d~~i~iwd~~~~~--------------~-----------------------------  153 (383)
T 3ei3_B          133 ----QLF------------VSSIRGATTLRDFSGSV--------------I-----------------------------  153 (383)
T ss_dssp             ----EEE------------EEETTTEEEEEETTSCE--------------E-----------------------------
T ss_pred             ----EEE------------EEeCCCEEEEEECCCCc--------------e-----------------------------
Confidence                111            11234667777653100              0                             


Q ss_pred             ccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec
Q psy8895         180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG  259 (479)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~  259 (479)
                                                    +......+|...|.+++|+|++++|++|+.|+.|++||+ +++.+..+.+
T Consensus       154 ------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  202 (383)
T 3ei3_B          154 ------------------------------QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL  202 (383)
T ss_dssp             ------------------------------EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC
T ss_pred             ------------------------------EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc
Confidence                                          000011245688999999999999999999999999999 5778889999


Q ss_pred             CCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCC
Q psy8895         260 HVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDD  336 (479)
Q Consensus       260 h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~  336 (479)
                      |...|.+++|+|+++ ++++++.|+.|++||++..+.... .....+...+.++.|+| ++..+++++.|+.|++|+.  
T Consensus       203 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~--  280 (383)
T 3ei3_B          203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSS--  280 (383)
T ss_dssp             SSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEET--
T ss_pred             CCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEEC--
Confidence            999999999999999 899999999999999986322110 01124567899999999 8887766666555555554  


Q ss_pred             CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-----------------CCceEEEEEeCCCcEEEEEcCC-cEEEE
Q psy8895         337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-----------------KKSVRSVALHPTLYMFASASPD-NIKQW  398 (479)
Q Consensus       337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-----------------~~~v~~i~~~~~~~~l~s~s~d-~i~~w  398 (479)
                                             ++++....+.+|                 ...+..++++|++.+  +++.| .|++|
T Consensus       281 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iw  335 (383)
T 3ei3_B          281 -----------------------YDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIY  335 (383)
T ss_dssp             -----------------------TBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEE
T ss_pred             -----------------------CCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEE
Confidence                                   443333333322                 234556777777776  45555 59999


Q ss_pred             eCCCCeEEeeecC--CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         399 KCPEGKFIQNLPG--HNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       399 ~~~~~~~~~~~~~--h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      |..+++.+..+.+  |...+.+++|+|++ +|++|+ ||.|++||+++
T Consensus       336 d~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          336 DANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             ETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             ecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            9999999999987  46788888999999 888887 99999999875

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-36  Score=299.12  Aligned_cols=314  Identities=15%  Similarity=0.217  Sum_probs=246.7

Q ss_pred             cccceEEEEEccCCc-eEEEe----------cCCCeEEEEeecccce---EeeecccccceEEEEecCCCCccccceEEe
Q psy8895          32 HLSSVNTISLHPTID-VLITA----------GRDSTARVWDVRTKAN---VYTLTGHTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        32 H~~~V~~l~~sp~g~-~laSg----------s~D~~vriWd~~t~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      +...|.+++|+|+|+ +||+|          +.|++|+|||+.++..   +..+ .|...+.++.|.++...     +  
T Consensus        11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~-----l--   82 (416)
T 2pm9_A           11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKI-----I--   82 (416)
T ss_dssp             EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSC-----E--
T ss_pred             hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCe-----E--
Confidence            446889999999997 99999          9999999999998863   3333 58888999998765432     1  


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                              +            ....++.+++|+.....                                          
T Consensus        83 --------~------------~~~~dg~v~vw~~~~~~------------------------------------------  100 (416)
T 2pm9_A           83 --------A------------GALDNGSLELYSTNEAN------------------------------------------  100 (416)
T ss_dssp             --------E------------EEESSSCEEEECCSSTT------------------------------------------
T ss_pred             --------E------------EEccCCeEEEeeccccc------------------------------------------
Confidence                    1            11234566777643100                                          


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc----
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGK----  252 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~----  252 (479)
                                                   ...+....+.+|.+.|.+++|+|+ +++|++++.|+.|++||+.+++    
T Consensus       101 -----------------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A          101 -----------------------------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             -----------------------------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             -----------------------------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence                                         000122356689999999999998 8999999999999999999886    


Q ss_pred             --eEE---EEecCCcCEEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCC----CCCCCeEEEEEeCCC-CEEE
Q psy8895         253 --LKL---SLTGHVGSVRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSM----DSESGIFSMTFDNSG-SRLI  321 (479)
Q Consensus       253 --~~~---~~~~h~~~v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~i~~~~~~~~~-~~l~  321 (479)
                        ...   .+.+|...|.+++|+|+ +.++++++.|+.|++||++..+........    .+...+.++.|+|++ ..++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence              332   24678999999999999 789999999999999999876554332111    126789999999997 6899


Q ss_pred             EEeCCC---eEEEEeCCCCC-------------------CC-CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE
Q psy8895         322 TTEADK---TVKLYKEDDSA-------------------TE-ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV  378 (479)
Q Consensus       322 ~~~~d~---~i~~~~~~~~~-------------------~~-~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i  378 (479)
                      +++.++   .|++|+.....                   .+ +...+++++.|++|++||+++++++.++..|...|+++
T Consensus       232 ~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  311 (416)
T 2pm9_A          232 TATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT  311 (416)
T ss_dssp             EEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred             EEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence            999998   99999976531                   01 34679999999999999999999999999999999999


Q ss_pred             EEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeee-----------------------------------cCCcceEEEEEE
Q psy8895         379 ALHPTL-YMFASASPDN-IKQWKCPEGKFIQNL-----------------------------------PGHNAIINSICV  421 (479)
Q Consensus       379 ~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~-----------------------------------~~h~~~v~~l~~  421 (479)
                      +|+|++ .++++++.|+ |++|++.+++.....                                   ..|...+.+++|
T Consensus       312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (416)
T 2pm9_A          312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW  391 (416)
T ss_dssp             EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred             EECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence            999998 8999998775 999999776532221                                   126677889999


Q ss_pred             cCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         422 NNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       422 ~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      +|+| +|++|+.|++|+||++.++
T Consensus       392 s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          392 AFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             eeCCeEEEEeCCCCeEEEEEeccC
Confidence            9999 8899999999999999875

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=4.5e-35  Score=283.35  Aligned_cols=290  Identities=18%  Similarity=0.196  Sum_probs=228.4

Q ss_pred             cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV  106 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (479)
                      +..|.++|++++|+|++++||+|+.|++|++||+++++  .+.++.+|...+.++.|.++...     ++          
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~----------   68 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-----IV----------   68 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-----EE----------
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCE-----EE----------
Confidence            45689999999999999999999999999999999987  88899999999999998765321     11          


Q ss_pred             ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895         107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN  186 (479)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  186 (479)
                                  ....++.+++|++...+                                                   
T Consensus        69 ------------~~~~dg~i~vwd~~~~~---------------------------------------------------   85 (372)
T 1k8k_C           69 ------------TCGTDRNAYVWTLKGRT---------------------------------------------------   85 (372)
T ss_dssp             ------------EEETTSCEEEEEEETTE---------------------------------------------------
T ss_pred             ------------EEcCCCeEEEEECCCCe---------------------------------------------------
Confidence                        11234567777642100                                                   


Q ss_pred             hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEEecCCc
Q psy8895         187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSLTGHVG  262 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~~~h~~  262 (479)
                                            ......+.+|...|.+++|+|++++|++++.|+.|++||+..+..    .....+|..
T Consensus        86 ----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           86 ----------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             ----------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             ----------------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence                                  000112346888999999999999999999999999999988762    233367889


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCC------------------CcccCCCCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN------------------KAPVQPGSMDSESGIFSMTFDNSGSRLITTE  324 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  324 (479)
                      .|.+++|+|++.++++++.|+.|++||++..                  +.....  ..+...+.++.|+|++..     
T Consensus       144 ~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-----  216 (372)
T 1k8k_C          144 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSR-----  216 (372)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC--CCCSSCEEEEEECSSSSE-----
T ss_pred             CeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec--CCCCCeEEEEEECCCCCE-----
Confidence            9999999999999999999999999997521                  111111  134556778888776654     


Q ss_pred             CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCC--
Q psy8895         325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE--  402 (479)
Q Consensus       325 ~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~--  402 (479)
                                          +++++.|+.|++||+++++++..+..|...|++++|+|++.+++++.++.+++|+..+  
T Consensus       217 --------------------l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~  276 (372)
T 1k8k_C          217 --------------------VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA  276 (372)
T ss_dssp             --------------------EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTT
T ss_pred             --------------------EEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcC
Confidence                                4667778888999999999999999999999999999999999999777899999877  


Q ss_pred             CeE--------------------------------E------eee-cCCcceEEEEEEc-CC----CEEEEEeCCCcEEE
Q psy8895         403 GKF--------------------------------I------QNL-PGHNAIINSICVN-NE----GVLVSGADNGTMCF  438 (479)
Q Consensus       403 ~~~--------------------------------~------~~~-~~h~~~v~~l~~~-~~----~~l~sg~~dg~i~l  438 (479)
                      ++.                                .      ..+ .+|...|+++++. ++    .+|+||+.||+|++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~  356 (372)
T 1k8k_C          277 GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSI  356 (372)
T ss_dssp             TEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEE
T ss_pred             ceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEE
Confidence            421                                0      233 4899999999854 66    59999999999999


Q ss_pred             EecCCCe
Q psy8895         439 WDWRTGY  445 (479)
Q Consensus       439 Wd~~~~~  445 (479)
                      ||+++++
T Consensus       357 W~~~~~~  363 (372)
T 1k8k_C          357 WDVRSLE  363 (372)
T ss_dssp             EEHHHHH
T ss_pred             EEecChh
Confidence            9998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.6e-36  Score=291.30  Aligned_cols=289  Identities=14%  Similarity=0.149  Sum_probs=217.7

Q ss_pred             cCCcccceEEEEEccCCceEEEecCCCeEEEEeeccc--ceEeeecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV  106 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (479)
                      +..|.++|++++|+|+|++||+|+.|++|+|||+.++  +.+.++.+|...|.++.|.++...     +           
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-----l-----------   70 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNR-----I-----------   70 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCC-----E-----------
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCE-----E-----------
Confidence            3456789999999999999999999999999999998  788899999999999999775432     1           


Q ss_pred             ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895         107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN  186 (479)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  186 (479)
                                 .+...++.+++|++...+                                                   
T Consensus        71 -----------~s~s~d~~v~vwd~~~~~---------------------------------------------------   88 (377)
T 3dwl_C           71 -----------VTCSQDRNAYVYEKRPDG---------------------------------------------------   88 (377)
T ss_dssp             -----------EEEETTSSEEEC---------------------------------------------------------
T ss_pred             -----------EEEeCCCeEEEEEcCCCC---------------------------------------------------
Confidence                       112245677888753210                                                   


Q ss_pred             hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEec-CCc
Q psy8895         187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTG-HVG  262 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~-h~~  262 (479)
                                           .++....+.+|...|.+++|+|++++|++++.|+.|++||+++++   ....+.+ |..
T Consensus        89 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           89 ---------------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             ---------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             ---------------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence                                 001112355789999999999999999999999999999999886   4677877 999


Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc---------------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV---------------QPGSMDSESGIFSMTFDNSGSRLITTEADK  327 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  327 (479)
                      .|.+++|+|++.++++++.|+.|++||++......               ......+...+.++.|+|++++        
T Consensus       148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~--------  219 (377)
T 3dwl_C          148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNA--------  219 (377)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSC--------
T ss_pred             CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCE--------
Confidence            99999999999999999999999999985322100               0000145567888888887665        


Q ss_pred             eEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895         328 TVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG  403 (479)
Q Consensus       328 ~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~  403 (479)
                                       +++++.|++|++||+++++.    +..+.+|...|++++|+|++.++++++++.+.+|+....
T Consensus       220 -----------------l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~  282 (377)
T 3dwl_C          220 -----------------LAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNES  282 (377)
T ss_dssp             -----------------EEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC-
T ss_pred             -----------------EEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCC
Confidence                             45667777788888887766    778889999999999999999999999998888877522


Q ss_pred             eE--E----------------------------------e----------------eecCCcceEEEEEEcCCC-----E
Q psy8895         404 KF--I----------------------------------Q----------------NLPGHNAIINSICVNNEG-----V  426 (479)
Q Consensus       404 ~~--~----------------------------------~----------------~~~~h~~~v~~l~~~~~~-----~  426 (479)
                      ..  .                                  .                ....|...|+++++.++.     .
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~  362 (377)
T 3dwl_C          283 GWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITA  362 (377)
T ss_dssp             --CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEE
T ss_pred             ceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEE
Confidence            10  0                                  0                011399999999865433     6


Q ss_pred             EEEEeCCCcEEEEec
Q psy8895         427 LVSGADNGTMCFWDW  441 (479)
Q Consensus       427 l~sg~~dg~i~lWd~  441 (479)
                      |+|||.||+|++||+
T Consensus       363 ~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          363 FTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEEEETTSEEEEECC
T ss_pred             EEeecCCCcEEEecC
Confidence            999999999999985

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5e-35  Score=281.24  Aligned_cols=229  Identities=17%  Similarity=0.280  Sum_probs=188.5

Q ss_pred             CCCccEEEEEEcCC---CcEEEEEeCCCeEEEEECCCCc-eEEEEecCCcCEEEEE------EcCCCCEEEEEECCCcEE
Q psy8895         217 GHLGWVRCVAVEPG---NEWFATGSADKIIKVWDLATGK-LKLSLTGHVGSVRGLT------VSPRHPYLFSCGDDRTVK  286 (479)
Q Consensus       217 ~h~~~v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~~~-~~~~~~~h~~~v~~v~------~~~~~~~l~s~~~d~~i~  286 (479)
                      +|...|.+++|+|+   +++|++|+.|+.|++||+.+++ ....+.+|...|.+++      |+|++.++++++.|+.|+
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~  142 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVK  142 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEE
Confidence            35677889999998   6999999999999999999988 8889999999999995      478899999999999999


Q ss_pred             EEECCCCCccc-CCC--CCCCCCCeEEEE----EeCCCCEEEEEeCCCeEEEEeCCCCC----------------CC---
Q psy8895         287 CWDLEYNKAPV-QPG--SMDSESGIFSMT----FDNSGSRLITTEADKTVKLYKEDDSA----------------TE---  340 (479)
Q Consensus       287 ~wd~~~~~~~~-~~~--~~~~~~~i~~~~----~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~---  340 (479)
                      +||++..+... ...  .......+.++.    |++++..+++++.|+.|++|+.....                .+   
T Consensus       143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~  222 (357)
T 3i2n_A          143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDI  222 (357)
T ss_dssp             EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSS
T ss_pred             EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCC
Confidence            99998765222 111  111234788888    67899999999999999999987542                12   


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEEc-----cCCCceEEEEEeCCCc-EEEEEcCCc-EEEEeCCCC----------
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTLT-----NHKKSVRSVALHPTLY-MFASASPDN-IKQWKCPEG----------  403 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-----~h~~~v~~i~~~~~~~-~l~s~s~d~-i~~w~~~~~----------  403 (479)
                      ....+++++.|+.|++||+++++.+..+.     +|...|++++|+|++. +|++++.|+ +++||+.++          
T Consensus       223 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g  302 (357)
T 3i2n_A          223 SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG  302 (357)
T ss_dssp             SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred             CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence            56789999999999999998876655544     8999999999999988 788888774 999998643          


Q ss_pred             ---------eEEeeecCCcceEEEEEEcCCC-EEE-EEeCCCcEEEEecCCCe
Q psy8895         404 ---------KFIQNLPGHNAIINSICVNNEG-VLV-SGADNGTMCFWDWRTGY  445 (479)
Q Consensus       404 ---------~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~~dg~i~lWd~~~~~  445 (479)
                               +.+..+.+|...|.+++|+|++ +|+ +++.||.|++||+.+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          303 IEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             CCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             CccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                     4577788999999999999998 676 89999999999998754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=4.7e-34  Score=272.02  Aligned_cols=308  Identities=17%  Similarity=0.258  Sum_probs=247.8

Q ss_pred             cccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccC
Q psy8895          32 HLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAG  111 (479)
Q Consensus        32 H~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (479)
                      |.++|.+++|+|||++++++..++.+.+|+...........+|...+.++.|.++...     +          +     
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l----------~-----   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRH-----V----------Y-----   67 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSE-----E----------E-----
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcE-----E----------E-----
Confidence            4568999999999999999998888888877665555555689999999998765421     1          1     


Q ss_pred             ceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHH
Q psy8895         112 FLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ  191 (479)
Q Consensus       112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  191 (479)
                             ... ++.+++|+....+..                                                      
T Consensus        68 -------~~~-dg~i~iw~~~~~~~~------------------------------------------------------   85 (337)
T 1gxr_A           68 -------TGG-KGCVKVWDISHPGNK------------------------------------------------------   85 (337)
T ss_dssp             -------EEC-BSEEEEEETTSTTCC------------------------------------------------------
T ss_pred             -------EcC-CCeEEEEECCCCCce------------------------------------------------------
Confidence                   111 356777765321000                                                      


Q ss_pred             HHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEE
Q psy8895         192 QAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTV  269 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~  269 (479)
                                     .... .....+|...|.+++|+|++++|++++.|+.|++||+.+++  ....+..|...|.+++|
T Consensus        86 ---------------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~  149 (337)
T 1gxr_A           86 ---------------SPVS-QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI  149 (337)
T ss_dssp             ---------------SCSE-EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred             ---------------eeee-cccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence                           0000 00123688899999999999999999999999999999887  56678889999999999


Q ss_pred             cCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------
Q psy8895         270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------  338 (479)
Q Consensus       270 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------  338 (479)
                      +|++.++++++.|+.|++||+++.+.....  ..+...+.++.|+|++..+++++.|+.+++|+.....           
T Consensus       150 ~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v  227 (337)
T 1gxr_A          150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI  227 (337)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE
T ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCceeeee--ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCce
Confidence            999999999999999999999876544332  2356789999999999999999999999999986542           


Q ss_pred             -----CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC
Q psy8895         339 -----TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       339 -----~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h  412 (479)
                           .++...+++++.|+.|++||++.++. ..+..|...|.+++|+|++.++++++.++ +++|+..+++.+.. ..|
T Consensus       228 ~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~  305 (337)
T 1gxr_A          228 FSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKE  305 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EEC
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecC
Confidence                 13456799999999999999998765 46778999999999999999999988775 99999999887744 357


Q ss_pred             cceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         413 NAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      ...|.+++++|++ +|++++.||.|++||+
T Consensus       306 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          306 SSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            8899999999998 8999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.1e-34  Score=304.21  Aligned_cols=333  Identities=19%  Similarity=0.258  Sum_probs=263.4

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      .+.+++.+|.+.|.+++|||+|++||+|+.||+|+|||+.+++.+.++.+|...|.++.|.++...     +        
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l--------   70 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNW-----I--------   70 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTE-----E--------
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCE-----E--------
Confidence            345678899999999999999999999999999999999999999999999999999998765321     1        


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                        +            ....++.+++|+....                                                 
T Consensus        71 --~------------~~~~dg~i~vw~~~~~-------------------------------------------------   87 (814)
T 3mkq_A           71 --I------------VGSDDFRIRVFNYNTG-------------------------------------------------   87 (814)
T ss_dssp             --E------------EEETTSEEEEEETTTC-------------------------------------------------
T ss_pred             --E------------EEeCCCeEEEEECCCC-------------------------------------------------
Confidence              1            1123456666654210                                                 


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCc
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVG  262 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~  262 (479)
                                                +....+.+|.+.|.+++|+|++++|++++.|+.|++||+.++ .....+.+|..
T Consensus        88 --------------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  141 (814)
T 3mkq_A           88 --------------------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (814)
T ss_dssp             --------------------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS
T ss_pred             --------------------------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC
Confidence                                      112345679999999999999999999999999999999987 66778899999


Q ss_pred             CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEeCCCCC-
Q psy8895         263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN--SGSRLITTEADKTVKLYKEDDSA-  338 (479)
Q Consensus       263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~-  338 (479)
                      .|.+++|+| ++..+++++.|+.|++||++........ ...+...+.++.|+|  ++..+++++.++.+++|+..... 
T Consensus       142 ~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~  220 (814)
T 3mkq_A          142 FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL-TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC  220 (814)
T ss_dssp             CEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE-ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred             cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE-ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            999999999 8889999999999999999765543322 122336788999998  89999999999999999976532 


Q ss_pred             ----------------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc--EEEEEcCCcEEEEeC
Q psy8895         339 ----------------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY--MFASASPDNIKQWKC  400 (479)
Q Consensus       339 ----------------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~d~i~~w~~  400 (479)
                                      .+....+++++.||+|++||+.+++.+..+..|...+.+++|+|++.  ++++++++.+.+|+.
T Consensus       221 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence                            13456799999999999999999999999999999999999999986  688888888888886


Q ss_pred             CCCeE----------Ee---------------------------------eecCCcceEEEEEEcCCC-EEEEEeCCCcE
Q psy8895         401 PEGKF----------IQ---------------------------------NLPGHNAIINSICVNNEG-VLVSGADNGTM  436 (479)
Q Consensus       401 ~~~~~----------~~---------------------------------~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i  436 (479)
                      .....          +.                                 .+..+...+.+++++|++ ++++++ |+.+
T Consensus       301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~  379 (814)
T 3mkq_A          301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY  379 (814)
T ss_dssp             SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE
T ss_pred             CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE
Confidence            54321          11                                 113344567899999999 777777 8999


Q ss_pred             EEEecCCCeEEEEEEEeEecCCCC
Q psy8895         437 CFWDWRTGYNFQRLQVRCVSGFPK  460 (479)
Q Consensus       437 ~lWd~~~~~~~~~~~~~~~~~~~~  460 (479)
                      .+|++........-+..++..-|+
T Consensus       380 ~i~~~~~~~~~~~~~i~~~~~spd  403 (814)
T 3mkq_A          380 VIYTALAWRNKAFGKCQDFVWGPD  403 (814)
T ss_dssp             EEEETTTTEEEEEEECSEEEECTT
T ss_pred             EEEECccccccCCCceEEEEEeCC
Confidence            999987654444334444443343

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.5e-34  Score=271.80  Aligned_cols=263  Identities=21%  Similarity=0.347  Sum_probs=213.3

Q ss_pred             ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCC-----CceEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD  282 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  282 (479)
                      ..+..++.+|.+.|.+++|+|++ ++|++|+.|++|++||+..     +..+..+.+|...|.+++|+|++.++++++.|
T Consensus         7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D   86 (319)
T 3frx_A            7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWD   86 (319)
T ss_dssp             EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCC
Confidence            45567899999999999999965 8999999999999999864     23466889999999999999999999999999


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------C------
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------E------  340 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~------  340 (479)
                      ++|++||+++++.....  ..+...|.++.|+|++..+++++.|++|++|+......                +      
T Consensus        87 ~~v~~wd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  164 (319)
T 3frx_A           87 KTLRLWDVATGETYQRF--VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADD  164 (319)
T ss_dssp             SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC-----
T ss_pred             CEEEEEECCCCCeeEEE--ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCC
Confidence            99999999877654332  34677899999999999999999999999999764210                0      


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                      ....+++++.|++|++||+++.+....+.+|...|++++|+|++.+|++++.|. |++||..+++.+..+..+ ..|.++
T Consensus       165 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~  243 (319)
T 3frx_A          165 DSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSL  243 (319)
T ss_dssp             -CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEE
T ss_pred             CccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEE
Confidence            233699999999999999999999999999999999999999999999998875 999999999998888765 579999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecCCCCCceEEeeehhhhccc
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNR  475 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (479)
                      +|+|++ +|++++ ++.+++|++.+++.+..++...............+++|++-|+
T Consensus       244 ~~sp~~~~la~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  299 (319)
T 3frx_A          244 AFSPNRYWLAAAT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ  299 (319)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSS
T ss_pred             EEcCCCCEEEEEc-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCC
Confidence            999999 566655 5569999999887765543221111111122345566666543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2e-33  Score=269.09  Aligned_cols=242  Identities=18%  Similarity=0.299  Sum_probs=209.8

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+...++.+|.+.|.+++|+|++++|++|+.|++|++||+.+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus        45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw  124 (340)
T 1got_B           45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred             chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEe
Q psy8895         289 DLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGS  349 (479)
Q Consensus       289 d~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs  349 (479)
                      |+........  .....+...+.++.|.+++. +++++.|++|++|+.....                 .++...+++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~  203 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA  203 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            9976532111  11124567899999988764 8899999999999976532                 13456799999


Q ss_pred             CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecC--CcceEEEEEEcCCC-
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPG--HNAIINSICVNNEG-  425 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~-  425 (479)
                      .|++|++||+++++++.++.+|...|++++|+|++.+|++++.|. |++||+.+++.+..+..  +...|.+++|+|++ 
T Consensus       204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  283 (340)
T 1got_B          204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR  283 (340)
T ss_dssp             TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred             CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence            999999999999999999999999999999999999999998885 99999999887766543  34579999999999 


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         426 VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +|++|+.||.|++||+.++..+..++
T Consensus       284 ~l~~g~~d~~i~vwd~~~~~~~~~~~  309 (340)
T 1got_B          284 LLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEECCCCeEEEEEcccCcEeeEee
Confidence            89999999999999999988776653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.8e-33  Score=281.01  Aligned_cols=305  Identities=21%  Similarity=0.317  Sum_probs=246.1

Q ss_pred             eeecCCcccce-EEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          26 IRHYHGHLSSV-NTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        26 ~~~~~gH~~~V-~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      ...+.||.++| .++++  ++++|+||+.||+|++||+.+++.+.++.+|.+.|.++.|.++.      .+         
T Consensus       114 ~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~------~l---------  176 (464)
T 3v7d_B          114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------IL---------  176 (464)
T ss_dssp             EEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT------EE---------
T ss_pred             eEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC------EE---------
Confidence            34677898886 56555  56899999999999999999999999999999999999986532      11         


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                                   .+...++++++|+....                                                  
T Consensus       177 -------------~s~s~dg~i~vwd~~~~--------------------------------------------------  193 (464)
T 3v7d_B          177 -------------VSGSTDRTVRVWDIKKG--------------------------------------------------  193 (464)
T ss_dssp             -------------EEEETTSCEEEEETTTT--------------------------------------------------
T ss_pred             -------------EEEeCCCCEEEEECCCC--------------------------------------------------
Confidence                         12234567777765310                                                  


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEc--CCCcEEEEEeCCCeEEEEECCCCce---------
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVE--PGNEWFATGSADKIIKVWDLATGKL---------  253 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~g~~l~sgs~d~~i~iWd~~~~~~---------  253 (479)
                                               +....+.+|.+.|.+++|+  ++++++++|+.|+.|++||+.++..         
T Consensus       194 -------------------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~  248 (464)
T 3v7d_B          194 -------------------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD  248 (464)
T ss_dssp             -------------------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred             -------------------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence                                     1123456799999999998  5789999999999999999987652         


Q ss_pred             --------------EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCE
Q psy8895         254 --------------KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSR  319 (479)
Q Consensus       254 --------------~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (479)
                                    ...+.+|...|.++  ++++.++++++.|+.|++||+++.+.....  ..+...+.++.|+|++..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~  324 (464)
T 3v7d_B          249 YPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKR  324 (464)
T ss_dssp             SSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTE
T ss_pred             cceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCCCCE
Confidence                          45678899888877  567789999999999999999876654332  245678999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC
Q psy8895         320 LITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL  384 (479)
Q Consensus       320 l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~  384 (479)
                      +++++.|+.|++|+......               .....+++|+.|++|++||+++++...... |...+..++|+|++
T Consensus       325 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~  403 (464)
T 3v7d_B          325 CISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSD  403 (464)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECS
T ss_pred             EEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCC
Confidence            99999999999999865421               124679999999999999999887766653 66778889999999


Q ss_pred             cEEEEEcCCcEEEEeCCCCeEEee-ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         385 YMFASASPDNIKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       385 ~~l~s~s~d~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      .++++++++.+++||+.+++.+.. +.+|...|.+++++++..+++++.||.+.+|-
T Consensus       404 ~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          404 NILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             SEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             CEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEE
Confidence            999999977899999999999886 67899999999998655777888888766554

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.3e-35  Score=286.25  Aligned_cols=306  Identities=14%  Similarity=0.198  Sum_probs=233.2

Q ss_pred             cceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCce
Q psy8895          34 SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFL  113 (479)
Q Consensus        34 ~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (479)
                      ..+++++|+|+|++|++|+.|++|++||+.+++....+..| ..+....+.++...               ++       
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------l~-------  113 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRR---------------FI-------  113 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCE---------------EE-------
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCE---------------EE-------
Confidence            44568999999999999999999999999988877777666 22222233332110               11       


Q ss_pred             eeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHH
Q psy8895         114 LSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQA  193 (479)
Q Consensus       114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  193 (479)
                           ....++.+++|+...                                                            
T Consensus       114 -----~~~~dg~i~iwd~~~------------------------------------------------------------  128 (420)
T 3vl1_A          114 -----LGTTEGDIKVLDSNF------------------------------------------------------------  128 (420)
T ss_dssp             -----EEETTSCEEEECTTS------------------------------------------------------------
T ss_pred             -----EEECCCCEEEEeCCC------------------------------------------------------------
Confidence                 112345566665321                                                            


Q ss_pred             hHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC
Q psy8895         194 KAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH  273 (479)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~  273 (479)
                                     .+....+.+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++
T Consensus       129 ---------------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  193 (420)
T 3vl1_A          129 ---------------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG  193 (420)
T ss_dssp             ---------------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT
T ss_pred             ---------------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC
Confidence                           01122345799999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCCcccCCCC-CCCCCCeEE---------------------EEEeCCCCEEEEEeCCCeEEE
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNKAPVQPGS-MDSESGIFS---------------------MTFDNSGSRLITTEADKTVKL  331 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~i~~---------------------~~~~~~~~~l~~~~~d~~i~~  331 (479)
                      .++++++.|+.|++||+++.+....... ..+...+.+                     +.|+|++..+++++.|+.|++
T Consensus       194 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  273 (420)
T 3vl1_A          194 RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITV  273 (420)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEE
T ss_pred             CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEE
Confidence            9999999999999999987654432211 122333444                     445788899999999999999


Q ss_pred             EeCCCCCC------------------CCCC-eEEEEeCCCcEEEEECCCCe-eEEEEcc-CCCceEEEEEeCCCcEEEEE
Q psy8895         332 YKEDDSAT------------------EESH-PVITGSHDCTIRLWDLAAGK-SLCTLTN-HKKSVRSVALHPTLYMFASA  390 (479)
Q Consensus       332 ~~~~~~~~------------------~~~~-~l~sgs~d~~v~iwd~~~~~-~~~~~~~-h~~~v~~i~~~~~~~~l~s~  390 (479)
                      |+......                  +... .+++|+.|+.|++||+++++ ++..+.. |...|+++.+. ++.+|+++
T Consensus       274 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~  352 (420)
T 3vl1_A          274 HNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AGALFVSS  352 (420)
T ss_dssp             EETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TTEEEEEE
T ss_pred             EECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CCCEEEEe
Confidence            99865321                  2234 89999999999999999874 4777776 67788888665 67788888


Q ss_pred             cCCc-EEEEeCCCCe---------EEeeecCCcceEEEEEEcCCCE----EEEEeCCCcEEEEecCC
Q psy8895         391 SPDN-IKQWKCPEGK---------FIQNLPGHNAIINSICVNNEGV----LVSGADNGTMCFWDWRT  443 (479)
Q Consensus       391 s~d~-i~~w~~~~~~---------~~~~~~~h~~~v~~l~~~~~~~----l~sg~~dg~i~lWd~~~  443 (479)
                      +.|. +++|++...+         ....+.+|...|.+++|+|++.    +++.+.+|.+.+|+++.
T Consensus       353 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          353 GFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             TTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            8775 9999986631         1234567888999999998765    88888999999999864

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.6e-33  Score=267.54  Aligned_cols=212  Identities=20%  Similarity=0.292  Sum_probs=173.5

Q ss_pred             ecCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCC---------ceEEEEecCCcCEEEEEEcCC--CCEEEEEEC
Q psy8895         215 ISGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATG---------KLKLSLTGHVGSVRGLTVSPR--HPYLFSCGD  281 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~---------~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~  281 (479)
                      +.+|.+.|.+++|+|  ++++|++|+.|+.|++||+.++         +....+.+|...|.+++|+|+  +.++++++.
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence            456888999999999  6999999999999999999887         557788899999999999999  999999999


Q ss_pred             CCcEEEEECCCCCcccCC-----------CCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895         282 DRTVKCWDLEYNKAPVQP-----------GSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSATEESHPVIT  347 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~-----------~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s  347 (479)
                      |+.|++||++..+.....           ....+...+.++.|+|+   +..                         +++
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------------------------l~~  187 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEK-------------------------LAV  187 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCE-------------------------EEE
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcE-------------------------EEE
Confidence            999999999866543211           11234566788888875   444                         455


Q ss_pred             EeCCCcEEEEECCCCee--EEEEccCCCceEEEEEeCCC----cEEEEEcCCc-EEEEeCCCC-----------------
Q psy8895         348 GSHDCTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTL----YMFASASPDN-IKQWKCPEG-----------------  403 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~----~~l~s~s~d~-i~~w~~~~~-----------------  403 (479)
                      ++.|+.+.+|+...++.  +..+.+|...|++++|+|++    .+|++++.|. |++||+.++                 
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  267 (351)
T 3f3f_A          188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFD  267 (351)
T ss_dssp             EETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC----------------
T ss_pred             ecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccC
Confidence            66666666666665544  66778899999999999998    7888888775 999998764                 


Q ss_pred             -----------------------------eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         404 -----------------------------KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       404 -----------------------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                                                   +.+..+.+|...|++++|+|++ +|++|+.||.|++||+.++..++.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~  345 (351)
T 3f3f_A          268 NSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS  345 (351)
T ss_dssp             -----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             CCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence                                         5677889999999999999998 89999999999999999987665443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.1e-35  Score=289.32  Aligned_cols=296  Identities=18%  Similarity=0.239  Sum_probs=208.1

Q ss_pred             eeecCCcccceEEEEEccC-CceEEEecCCCeEEEEeecccce--EeeecccccceEEEEecCCCCccccceEEeccccE
Q psy8895          26 IRHYHGHLSSVNTISLHPT-IDVLITAGRDSTARVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCER  102 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp~-g~~laSgs~D~~vriWd~~t~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~  102 (479)
                      .+...+|...|+||+|||+ +++||||+.||+|+|||+.++..  ...+.+|.+.|.++.|.+.+..    .+       
T Consensus       112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~----~l-------  180 (435)
T 4e54_B          112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN----QF-------  180 (435)
T ss_dssp             CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT----EE-------
T ss_pred             cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC----EE-------
Confidence            3445689999999999995 67999999999999999987754  4556789999999999754321    11       


Q ss_pred             EEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccC
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPT  182 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  182 (479)
                                     .+...++++++|++....              .     .                          
T Consensus       181 ---------------~s~s~D~~v~iwd~~~~~--------------~-----~--------------------------  200 (435)
T 4e54_B          181 ---------------YASSMEGTTRLQDFKGNI--------------L-----R--------------------------  200 (435)
T ss_dssp             ---------------EEECSSSCEEEEETTSCE--------------E-----E--------------------------
T ss_pred             ---------------EEEeCCCEEEEeeccCCc--------------e-----e--------------------------
Confidence                           122345788888753210              0     0                          


Q ss_pred             CCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc
Q psy8895         183 TASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG  262 (479)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~  262 (479)
                                                  .......+...+.+++|+|++++|++|+.|+.|++||++. +.+..+.+|..
T Consensus       201 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~  251 (435)
T 4e54_B          201 ----------------------------VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK  251 (435)
T ss_dssp             ----------------------------EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS
T ss_pred             ----------------------------EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc
Confidence                                        0000012344567899999999999999999999999864 55667889999


Q ss_pred             CEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy8895         263 SVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE  340 (479)
Q Consensus       263 ~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  340 (479)
                      .|.+++|+|++. ++++++.|+.|++||++..+..... ....+...|.+++|+|++.+++++                 
T Consensus       252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-----------------  314 (435)
T 4e54_B          252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-----------------  314 (435)
T ss_dssp             CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-----------------
T ss_pred             eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEE-----------------
Confidence            999999999876 6778999999999999865543222 123466789999999988776554                 


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC------ceEEEEEeCCCcEEEEEc------------CC-cEEEEeCC
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK------SVRSVALHPTLYMFASAS------------PD-NIKQWKCP  401 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~------~v~~i~~~~~~~~l~s~s------------~d-~i~~w~~~  401 (479)
                              +.|++|++||+.+++....+..|..      .+....++|++.+++.+.            ++ .|++||..
T Consensus       315 --------~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~  386 (435)
T 4e54_B          315 --------DQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN  386 (435)
T ss_dssp             --------ESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred             --------cCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence                    5555566666665555555444321      122334555544444332            23 38999999


Q ss_pred             CCeEEeeec-CCcceEEEE-EEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         402 EGKFIQNLP-GHNAIINSI-CVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       402 ~~~~~~~~~-~h~~~v~~l-~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      +++.+..+. +|...|.++ +|+|++ +|++|+ |++|+|||+++|...
T Consensus       387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             SCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence            999988765 677788887 699999 677765 889999999988653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.8e-33  Score=276.06  Aligned_cols=207  Identities=22%  Similarity=0.343  Sum_probs=166.6

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      |...+.++++  ++.++++|+.|+.+++||.... ..+..+.+|...+..+.++|++.++++++.|+.+++||....+..
T Consensus       188 h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~  265 (420)
T 4gga_A          188 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG  265 (420)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC
T ss_pred             CCCceEEEee--CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc
Confidence            3344455554  4679999999999999999865 456788999999999999999999999999999999999765432


Q ss_pred             cC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         297 VQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       297 ~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                      ..  .....+...|.++.|.|.+..++.                      .++|+.|++|++||+.+++++..+..| ..
T Consensus       266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la----------------------~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~  322 (420)
T 4gga_A          266 WVPLQTFTQHQGAVKAVAWCPWQSNVLA----------------------TGGGTSDRHIRIWNVCSGACLSAVDAH-SQ  322 (420)
T ss_dssp             SCCSEEECCCSSCEEEEEECTTCTTEEE----------------------EEECTTTCEEEEEETTTTEEEEEEECS-SC
T ss_pred             ceeeeeecccCCceeeeeeCCCcccEEE----------------------EEeecCCCEEEEEeCCccccceeeccc-cc
Confidence            21  112345677889999886543321                      235668999999999999999888755 57


Q ss_pred             eEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         375 VRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      +.++.|+|++..+++++  .| .|++||..+++++..+.+|.+.|++++|+|++ +|+||+.|++|+|||+....+.++
T Consensus       323 v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~  401 (420)
T 4gga_A          323 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR  401 (420)
T ss_dssp             EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred             eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence            88999999988776654  34 59999999999999999999999999999999 899999999999999987655443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-33  Score=267.56  Aligned_cols=242  Identities=21%  Similarity=0.295  Sum_probs=209.9

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+..+.+.+|.+.|.+++|+|++++|+||+.|++|++||..+++....+..|...|.+++|+|++.++++++.|+.+++|
T Consensus        54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~  133 (354)
T 2pbi_B           54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY  133 (354)
T ss_dssp             CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred             cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence            35567899999999999999999999999999999999999999989999999999999999999999999999999999


Q ss_pred             ECCCCCccc----CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCeE
Q psy8895         289 DLEYNKAPV----QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHPV  345 (479)
Q Consensus       289 d~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~l  345 (479)
                      ++.......    ......+...+.++.|+|++..+++++.|++|++|+......                   .....+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            986432110    001123567799999999999999999999999999765421                   124689


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC--cceEEEEEEc
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH--NAIINSICVN  422 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h--~~~v~~l~~~  422 (479)
                      ++|+.|++|++||+++++++..+.+|...|++++|+|++.+|++++.|. +++||+.+++.+..+..+  ...+.+++|+
T Consensus       214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            9999999999999999999999999999999999999999999999885 999999988877666543  4578999999


Q ss_pred             CCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         423 NEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       423 ~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      |++ +|++|+.|++|++||+.++..+..+
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             CCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            998 8999999999999999999877654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=5.3e-33  Score=262.75  Aligned_cols=224  Identities=19%  Similarity=0.339  Sum_probs=187.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      +|...|.+++|+|++++|++|+.|++|++||+++++.+..+.+|...+.++.+.  +..+++++.++.+++|+.......
T Consensus        65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~  142 (318)
T 4ggc_A           65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH  142 (318)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CCEEEEEecCCceEeeecCCCcee
Confidence            466779999999999999999999999999999999999999999988876654  568999999999999998765433


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC----------------------CCC--eEEEEeCCC
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----------------------ESH--PVITGSHDC  352 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----------------------~~~--~l~sgs~d~  352 (479)
                      ... ...+...+..+.+.+++..+++++.|++|++|+.......                      ...  .+++++.++
T Consensus       143 ~~~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  221 (318)
T 4ggc_A          143 VAT-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR  221 (318)
T ss_dssp             EEE-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred             EEE-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence            221 1245677899999999999999999999999998653210                      111  235677899


Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      +|++||.+........ .+...+..+.|+|++..+++++  .| .|++||..+++++..+.+|.+.|++++|+|++ +|+
T Consensus       222 ~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~  300 (318)
T 4ggc_A          222 HIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA  300 (318)
T ss_dssp             EEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             EEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence            9999999988776665 4667899999999887766543  44 59999999999999999999999999999999 899


Q ss_pred             EEeCCCcEEEEecCCC
Q psy8895         429 SGADNGTMCFWDWRTG  444 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~  444 (479)
                      |||.||+|+|||+...
T Consensus       301 S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          301 SAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEETTTEEEEECCSCC
T ss_pred             EEecCCeEEEEECCCC
Confidence            9999999999998754

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=4.6e-34  Score=277.82  Aligned_cols=243  Identities=24%  Similarity=0.362  Sum_probs=208.2

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      .....+++.+|.+.|.+++|+|++++|+||+.|++|+|||+.+++....+.+|...|.+++|+|++.++++|+.|+.+++
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            34567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCc-----ccCCCCCCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCC----------------------
Q psy8895         288 WDLEYNKA-----PVQPGSMDSESGIFSMTFDNS-GSRLITTEADKTVKLYKEDDSAT----------------------  339 (479)
Q Consensus       288 wd~~~~~~-----~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~----------------------  339 (479)
                      ||+.....     ........+...+.++.|.|+ +..+++++.|++|++||......                      
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            99865321     111112345667888888886 45799999999999999764321                      


Q ss_pred             -CCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCc---
Q psy8895         340 -EESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHN---  413 (479)
Q Consensus       340 -~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~---  413 (479)
                       .+...+++|+.|++|++||++ ..+.+..+.+|...|++++|+|++.+|++++.|. +++||..+++.+..+..+.   
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~  294 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN  294 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc
Confidence             134679999999999999998 4577888999999999999999999999999885 9999999999888776543   


Q ss_pred             ----ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         414 ----AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       414 ----~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                          ..|.+++|+|++ +|++|+.||.|++||..+++.+..+
T Consensus       295 ~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence                248999999999 8999999999999999998877655

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6.3e-33  Score=271.50  Aligned_cols=313  Identities=18%  Similarity=0.267  Sum_probs=218.0

Q ss_pred             eecCCcccceEEEEEcc-CCceEEEecCCCeEEEEeecccceEeeec-------------ccccceEEEEecCCCCcccc
Q psy8895          27 RHYHGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRTKANVYTLT-------------GHTNTIASVVTQASEPQVGT   92 (479)
Q Consensus        27 ~~~~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t~~~~~~~~-------------~h~~~v~~~~~~~~~~~~~~   92 (479)
                      ..+.+|.++|++++|+| ++++||+|+.||+|++||+.+++....+.             +|...|.++.|.+.+...  
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  114 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM--  114 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC--
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE--
Confidence            45678999999999999 99999999999999999999887655543             588889888887633210  


Q ss_pred             ceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccc
Q psy8895          93 KTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELV  172 (479)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (479)
                        ++                      +...++.+++|++...+                                     
T Consensus       115 --l~----------------------s~~~d~~i~iwd~~~~~-------------------------------------  133 (408)
T 4a11_B          115 --FT----------------------SSSFDKTLKVWDTNTLQ-------------------------------------  133 (408)
T ss_dssp             --EE----------------------EEETTSEEEEEETTTTE-------------------------------------
T ss_pred             --EE----------------------EEeCCCeEEEeeCCCCc-------------------------------------
Confidence              11                      11234566777643110                                     


Q ss_pred             cccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcC---CCcEEEEEeCCCeEEEEECC
Q psy8895         173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP---GNEWFATGSADKIIKVWDLA  249 (479)
Q Consensus       173 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~g~~l~sgs~d~~i~iWd~~  249 (479)
                                                            ....+ .+...+.++.++|   ++.++++++.|+.|++||+.
T Consensus       134 --------------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  174 (408)
T 4a11_B          134 --------------------------------------TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK  174 (408)
T ss_dssp             --------------------------------------EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred             --------------------------------------cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence                                                  00011 2456678888877   45599999999999999999


Q ss_pred             CCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccC--------------CCCCCCCCCeEEEEEe
Q psy8895         250 TGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQ--------------PGSMDSESGIFSMTFD  314 (479)
Q Consensus       250 ~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~--------------~~~~~~~~~i~~~~~~  314 (479)
                      +++....+.+|...|.+++|+|+++ ++++++.|+.|++||++.......              .....+...+.++.|+
T Consensus       175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  254 (408)
T 4a11_B          175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT  254 (408)
T ss_dssp             SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred             CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence            9999999999999999999999998 588999999999999976542111              0112456789999999


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCC----------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         315 NSGSRLITTEADKTVKLYKEDDSAT----------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       315 ~~~~~l~~~~~d~~i~~~~~~~~~~----------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      |++..+++++.|+.+++|+......                      .....++.++.|+.|++||+.+++++..+.+|.
T Consensus       255 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~  334 (408)
T 4a11_B          255 SDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY  334 (408)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred             CCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence            9999999999999999999875431                      112457788899999999999999999999999


Q ss_pred             CceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         373 KSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      ..|++++|+|++.+|++++.|+ |++|+..+++.+.....+... ..+....+..+.+.+.|+.+++|+..
T Consensus       335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred             CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence            9999999999999999998775 999999988876655443322 11121222356778899999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-33  Score=271.89  Aligned_cols=224  Identities=21%  Similarity=0.265  Sum_probs=175.7

Q ss_pred             ecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      +.+|.+.|.+++|+++  +++|++++.|+.|++||+.+++  ....+.+|...|.+++|+|+  +.++++++.|+.|++|
T Consensus        51 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~  130 (379)
T 3jrp_A           51 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  130 (379)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEE
Confidence            3467888999999876  8999999999999999999987  67788889999999999999  9999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----e
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----S  364 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~  364 (479)
                      |++............+...+.++.|+|........            .....+...+++|+.|+.|++||++.++    .
T Consensus       131 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  198 (379)
T 3jrp_A          131 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE------------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  198 (379)
T ss_dssp             ECCTTSCCCEEEEECCTTCEEEEEECCCC----------------------CTTCEEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             ecCCCCceeeEEecCCCCceEEEEEcCcccccccc------------ccCCCCCCEEEEEeCCCeEEEEEecCCCcceee
Confidence            99866432221123456779999998853221110            0012234567888889999999987653    4


Q ss_pred             EEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCe-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         365 LCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGK-----FIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ...+.+|...|++++|+|+   +.+|++++.|. +++||..+++     .......|...|.+++|+|++ +|++++.||
T Consensus       199 ~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg  278 (379)
T 3jrp_A          199 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  278 (379)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSS
T ss_pred             EEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCC
Confidence            5677889999999999999   89999988775 9999998763     233344588999999999999 899999999


Q ss_pred             cEEEEecCCCeEEEEE
Q psy8895         435 TMCFWDWRTGYNFQRL  450 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~  450 (479)
                      .|++||+.++...+..
T Consensus       279 ~i~iw~~~~~~~~~~~  294 (379)
T 3jrp_A          279 KVTLWKENLEGKWEPA  294 (379)
T ss_dssp             SEEEEEEEETTEEEEE
T ss_pred             cEEEEeCCCCCccccc
Confidence            9999999876554443

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.9e-34  Score=280.63  Aligned_cols=303  Identities=15%  Similarity=0.214  Sum_probs=219.8

Q ss_pred             Eeeec-CCcccceEEEEEcc-CCceEEEecCCCeEEEEeecc---cc---eEeeecccccceEEEEecCCCCccccceEE
Q psy8895          25 VIRHY-HGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRT---KA---NVYTLTGHTNTIASVVTQASEPQVGTKTVL   96 (479)
Q Consensus        25 ~~~~~-~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t---~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~   96 (479)
                      ++.++ .+|.++|++++|+| ++++|||||.|++|+|||+.+   +.   ...++ +|...|.++.|.++...     + 
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~-----l-  126 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDA-----F-  126 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSE-----E-
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCE-----E-
Confidence            45566 89999999999999 999999999999999999987   43   22233 58999999998764321     1 


Q ss_pred             eccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccc
Q psy8895          97 LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE  176 (479)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (479)
                                           .+...++.+++|++........          .......        .+.         
T Consensus       127 ---------------------~s~s~dg~i~vwd~~~~~~~~~----------~~~~~~~--------~i~---------  158 (437)
T 3gre_A          127 ---------------------AVSSKDGQIIVLKVNHYQQESE----------VKFLNCE--------CIR---------  158 (437)
T ss_dssp             ---------------------EEEETTSEEEEEEEEEEEETTE----------EEEEEEE--------EEE---------
T ss_pred             ---------------------EEEeCCCEEEEEEeccccCCce----------eeccccc--------eeE---------
Confidence                                 1223457788887632100000          0000000        000         


Q ss_pred             cccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecC--CCccEEEEE--EcCCCcEEEEEeCCCeEEEEECCCCc
Q psy8895         177 NQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISG--HLGWVRCVA--VEPGNEWFATGSADKIIKVWDLATGK  252 (479)
Q Consensus       177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~--~~~~g~~l~sgs~d~~i~iWd~~~~~  252 (479)
                                                         ...+..  +...+.++.  +++++++|++|+.|+.|++||+++++
T Consensus       159 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  203 (437)
T 3gre_A          159 -----------------------------------KINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE  203 (437)
T ss_dssp             -----------------------------------EEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC
T ss_pred             -----------------------------------EEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe
Confidence                                               000111  456677777  66899999999999999999999999


Q ss_pred             eEEEEec--CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895         253 LKLSLTG--HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK  330 (479)
Q Consensus       253 ~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  330 (479)
                      .+..+.+  |...|.+++|+|++.++++|+.|+.|++||++..+..... ...+...|.++.+.|...            
T Consensus       204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~s------------  270 (437)
T 3gre_A          204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW-SFGDHAPITHVEVCQFYG------------  270 (437)
T ss_dssp             EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE-BCTTCEEEEEEEECTTTC------------
T ss_pred             eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE-ecCCCCceEEEEeccccC------------
Confidence            9999988  8899999999999999999999999999999876543321 113445677886665311            


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--------------------------CCCceEEEEEeCCC
Q psy8895         331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--------------------------HKKSVRSVALHPTL  384 (479)
Q Consensus       331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--------------------------h~~~v~~i~~~~~~  384 (479)
                               .+...+++|+.|++|++||+++++.+..+.+                          |...|++++|+ ++
T Consensus       271 ---------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~  340 (437)
T 3gre_A          271 ---------KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND  340 (437)
T ss_dssp             ---------TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT
T ss_pred             ---------CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc
Confidence                     1123466777777777777777776666653                          55568899999 66


Q ss_pred             cEEEEEcCC-cEEEEeCCCCeEEeeecC-------------------------------------CcceEEEEEEcCC--
Q psy8895         385 YMFASASPD-NIKQWKCPEGKFIQNLPG-------------------------------------HNAIINSICVNNE--  424 (479)
Q Consensus       385 ~~l~s~s~d-~i~~w~~~~~~~~~~~~~-------------------------------------h~~~v~~l~~~~~--  424 (479)
                      .+|++++.| .|++||+.+++....+.+                                     |...|+++++.++  
T Consensus       341 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~  420 (437)
T 3gre_A          341 KILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE  420 (437)
T ss_dssp             EEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSS
T ss_pred             eEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCC
Confidence            788888866 599999999887766665                                     8889999999876  


Q ss_pred             C-EEEEEeCCCcEEEEe
Q psy8895         425 G-VLVSGADNGTMCFWD  440 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd  440 (479)
                      + +|++|+.||.|+||+
T Consensus       421 ~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          421 TPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             SEEEEEEETTSCEEEEC
T ss_pred             ceEEEEEcCCceEEEeC
Confidence            5 899999999999995

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=3.6e-33  Score=269.16  Aligned_cols=222  Identities=18%  Similarity=0.276  Sum_probs=185.0

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEE--cCCCCEEEEEECCCcEEEEECCCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV--SPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~--~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      .+|.+.|.+++|+|++++|++++.|+.|++||+.+++... +.+|...|.+++|  ++++.++++++.|+.|++||+++.
T Consensus        83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A           83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            3577889999999999999999999999999999988765 5679999999999  899999999999999999999876


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC-------------------CC----CeEEEEeC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE-------------------ES----HPVITGSH  350 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~-------------------~~----~~l~sgs~  350 (479)
                      +.....   .....+.++.+.+  ..+++++.++.+.+|+.......                   ..    ..+++++.
T Consensus       162 ~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          162 NPMMVL---QLPERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             SCSEEE---ECSSCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             cEEEEE---ecCCCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            544322   2233566666554  58889999999999998653210                   01    12899999


Q ss_pred             CCcEEEEECCCC---eeEEEEccCCC------------ceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc
Q psy8895         351 DCTIRLWDLAAG---KSLCTLTNHKK------------SVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       351 d~~v~iwd~~~~---~~~~~~~~h~~------------~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~  414 (479)
                      |+.|++||++..   +.+..+..|..            .|++++|+|++.+|++++.|. |++||..+++++..+.+|..
T Consensus       237 dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  316 (368)
T 3mmy_A          237 EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ  316 (368)
T ss_dssp             TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS
T ss_pred             CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC
Confidence            999999999987   56777878776            799999999999898888775 99999999999999999999


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                      .|.+++|+|++ +|++++.|+..+.|++.+
T Consensus       317 ~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~  346 (368)
T 3mmy_A          317 PISACCFNHNGNIFAYASSYDWSKGHEFYN  346 (368)
T ss_dssp             CEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred             CceEEEECCCCCeEEEEecccccccccccC
Confidence            99999999999 899999998766555443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.3e-32  Score=262.66  Aligned_cols=263  Identities=23%  Similarity=0.393  Sum_probs=213.8

Q ss_pred             ceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCc-----eEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGK-----LKLSLTGHVGSVRGLTVSPRHPYLFSCGDD  282 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  282 (479)
                      ..+..+|.||.+.|++++|+|+ +++|+|||.|++|+|||+.+.+     +...+.+|...|.+++|+|+++++++++.|
T Consensus        28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d  107 (340)
T 4aow_A           28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD  107 (340)
T ss_dssp             EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence            3556689999999999999997 6899999999999999987653     456789999999999999999999999999


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CCC
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------EES  342 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~  342 (479)
                      +.|++|+..........  ......+....+.+.+..+++++.|+.+++|+......                    ...
T Consensus       108 ~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  185 (340)
T 4aow_A          108 GTLRLWDLTTGTTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN  185 (340)
T ss_dssp             SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred             ccceEEeecccceeeee--cCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence            99999998765443222  23445678888999999999999999999998754210                    123


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICV  421 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~  421 (479)
                      ..+++++.|++|++||+++++.+..+.+|...|++++|+|++.+|++++.|. +++||..+.+.+..+.++ ..|.++++
T Consensus       186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~  264 (340)
T 4aow_A          186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCF  264 (340)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEE
T ss_pred             cEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeec
Confidence            4578999999999999999999999999999999999999999999998875 999999999998888765 47899999


Q ss_pred             cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEeEecC-CCCCceEEeeehhhhcc
Q psy8895         422 NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG-FPKPSVFFFFLAFSYLN  474 (479)
Q Consensus       422 ~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  474 (479)
                      +|++.+++++.|+.|++||++++..+..++...... .......+.+++|++-+
T Consensus       265 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  318 (340)
T 4aow_A          265 SPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG  318 (340)
T ss_dssp             CSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred             CCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence            999988888899999999999998887765433211 11112234555655543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5e-32  Score=255.98  Aligned_cols=242  Identities=27%  Similarity=0.488  Sum_probs=208.4

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      .+.....+.+|.+.|.+++|+|++++|++|+.|+.|++|++.+++....+.+|...|.+++|+|+++++++++.|+.|++
T Consensus        12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence            45666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeC
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSH  350 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~  350 (479)
                      ||+++.+.....  ..+...+.++.|+|++..+++++.|+.|++|+......                 ++...+++++.
T Consensus        92 wd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  169 (312)
T 4ery_A           92 WDVSSGKCLKTL--KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY  169 (312)
T ss_dssp             EETTTCCEEEEE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EECCCCcEEEEE--cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            999876654322  24567899999999999999999999999999875421                 23567999999


Q ss_pred             CCcEEEEECCCCeeEEEEc-cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE---EEEcCCC
Q psy8895         351 DCTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS---ICVNNEG  425 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~---l~~~~~~  425 (479)
                      |+.|++||+++++.+..+. .+...+..++|+|++.++++++.|+ |++||..+++.+..+.+|...+.+   ....+++
T Consensus       170 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (312)
T 4ery_A          170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGG  249 (312)
T ss_dssp             TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSS
T ss_pred             CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCC
Confidence            9999999999998888764 4567899999999999999888775 999999999999999888754322   2233555


Q ss_pred             -EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         426 -VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                       +|++|+.||.|++||+++++.++.++
T Consensus       250 ~~l~sg~~dg~i~vwd~~~~~~~~~~~  276 (312)
T 4ery_A          250 KWIVSGSEDNLVYIWNLQTKEIVQKLQ  276 (312)
T ss_dssp             CEEEECCTTSCEEEEETTTCCEEEEEC
T ss_pred             cEEEEECCCCEEEEEECCCchhhhhhh
Confidence             89999999999999999998887764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=267.75  Aligned_cols=245  Identities=16%  Similarity=0.222  Sum_probs=189.7

Q ss_pred             CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEee----ecccccceEEEEecCCCCccccceEEeccccEEEEe
Q psy8895          31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYT----LTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV  106 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (479)
                      .|.++|++++|+|++ .|++|+.||+|||||+++++.+..    +.+|.+.|.++.|+++...                 
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~-----------------  141 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQ-----------------  141 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSE-----------------
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCE-----------------
Confidence            456789999999985 688999999999999999876544    3489999999999876432                 


Q ss_pred             ecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCc
Q psy8895         107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN  186 (479)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  186 (479)
                                +.+...++++++|++...                                                    
T Consensus       142 ----------l~sgs~d~~i~iwd~~~~----------------------------------------------------  159 (344)
T 4gqb_B          142 ----------AVSGSKDICIKVWDLAQQ----------------------------------------------------  159 (344)
T ss_dssp             ----------EEEEETTSCEEEEETTTT----------------------------------------------------
T ss_pred             ----------EEEEeCCCeEEEEECCCC----------------------------------------------------
Confidence                      112234567888865310                                                    


Q ss_pred             hhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEe--cCCcC
Q psy8895         187 TQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLT--GHVGS  263 (479)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~  263 (479)
                                             +....+.+|.+.|.+++|+|++ .+|++++.|++|++||+++++....+.  .|...
T Consensus       160 -----------------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~  216 (344)
T 4gqb_B          160 -----------------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYL  216 (344)
T ss_dssp             -----------------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCC
T ss_pred             -----------------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeecc
Confidence                                   1223567899999999999988 478999999999999999998877764  45567


Q ss_pred             EEEEEEcCC-CCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         264 VRGLTVSPR-HPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       264 v~~v~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      +.+++|+|+ +.++++|+.|++|++||+++.+.....  ..+...|.+++|+|++..                       
T Consensus       217 ~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--~~h~~~v~~v~fsp~g~~-----------------------  271 (344)
T 4gqb_B          217 PTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--AVHSQCVTGLVFSPHSVP-----------------------  271 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--ECCSSCEEEEEECSSSSC-----------------------
T ss_pred             ceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--cCCCCCEEEEEEccCCCe-----------------------
Confidence            999999985 567889999999999999877655432  346678999999987532                       


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKF  405 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~  405 (479)
                       +|++|+.|++|++||+++++.+ .+.+|.+.|++++|+|++. +|++++.| .|++|++.+...
T Consensus       272 -~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          272 -FLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             -CEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             -EEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence             3578888999999999887654 5689999999999999874 77888766 599999976543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=264.35  Aligned_cols=236  Identities=23%  Similarity=0.307  Sum_probs=197.0

Q ss_pred             ceeEEEecCCCc-cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE---EEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         209 WKLYRVISGHLG-WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL---SLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       209 ~~~~~~~~~h~~-~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~---~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      ..+...+.+|.+ .|.+++|+|+|++|++|+.|++|+|||+.++....   ...+|...|.+++|+|++.+|++++.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            345677889988 99999999999999999999999999998876432   23689999999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--------------------CCCCCe
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------TEESHP  344 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------~~~~~~  344 (479)
                      +++||++............+...|.+++|+|+++.+++++.|++|++|+.....                    .++...
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  164 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL  164 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence            999998765321111123467789999999999999999999999999976431                    123567


Q ss_pred             EEEEeCCCcEEEEECCCCe--eEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCC---------------CeEE
Q psy8895         345 VITGSHDCTIRLWDLAAGK--SLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPE---------------GKFI  406 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~---------------~~~~  406 (479)
                      +++|+.|++|++||++.++  +..++.+|...|++++|+|++.+|++++.|. |++|+...               .+++
T Consensus       165 l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~  244 (345)
T 3fm0_A          165 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI  244 (345)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred             EEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence            9999999999999998875  4568889999999999999999999998885 99998522               1234


Q ss_pred             eeecC-CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         407 QNLPG-HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       407 ~~~~~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      ..+.+ |...|.++++++++ .|++++.|+.|++|+..++
T Consensus       245 ~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~  284 (345)
T 3fm0_A          245 CTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN  284 (345)
T ss_dssp             EEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred             EEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence            45555 88899999999988 8999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=290.95  Aligned_cols=227  Identities=9%  Similarity=0.016  Sum_probs=166.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEecCCcCEEEE--EEcCCC-CEEEEEECCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLTGHVGSVRGL--TVSPRH-PYLFSCGDDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~~h~~~v~~v--~~~~~~-~~l~s~~~d~~i~~wd  289 (479)
                      .+.+|.+.|.+++|+++ ..|++|+.||+|++||++++. ....+.+|...|.++  +|+|++ .+|+|+|.|++|++||
T Consensus       261 ~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          261 TLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            56789999999999986 489999999999999999774 445688999999999  578887 8999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCC
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDC  352 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~  352 (479)
                      +++.+.............+.+++|+|++..+++++.|++|++|+......                 +....+++|+.|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            97654432111011112467899999999999999999999999765431                 3456789999999


Q ss_pred             cEEEEECCCCeeEEEEcc-----CCCceEEEEEeCCCcEEEEEcCCcEEEEeCC-CCeEEeeecCCcceEEEEEEcCCC-
Q psy8895         353 TIRLWDLAAGKSLCTLTN-----HKKSVRSVALHPTLYMFASASPDNIKQWKCP-EGKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~-~~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      +|++||+... .+..++.     +...|.+++|+|++..+..  .+.+.+|+.. ++..+..+.+|...|++++|+|++ 
T Consensus       420 tv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~  496 (524)
T 2j04_B          420 SLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSA  496 (524)
T ss_dssp             EEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEE--CCCCCCCC-------------CCCSCCCEEECCSTT
T ss_pred             EEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEc--cCCceecccccCCcceeeecCCCceEEEEECCCCCC
Confidence            9999998653 2222211     1125789999999986633  3334444432 567788899999999999999984 


Q ss_pred             ---EEEEEeCCCcEEEEecCCC
Q psy8895         426 ---VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       426 ---~l~sg~~dg~i~lWd~~~~  444 (479)
                         ++|+|+.||.||||+++-.
T Consensus       497 ~~~~lAsg~~~g~vrlw~l~~~  518 (524)
T 2j04_B          497 GGKCYAFSNSAGLLTLEYLSLE  518 (524)
T ss_dssp             TTTEEEEECTTSEEEEEECSCC
T ss_pred             ccHHHHhhccCceEEEEEcccc
Confidence               7999999999999998743

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-32  Score=259.58  Aligned_cols=235  Identities=22%  Similarity=0.321  Sum_probs=191.2

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEE-ec-CCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSL-TG-HVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~-~~-h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      .+....+.+|.+.|.+++|+|+  +|++|+.|++|++||+.++  .....+ .+ |...|.+++|+|++.+|++++.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3456788999999999999987  9999999999999999875  344555 44 9999999999999999999999999


Q ss_pred             EEEEECCCCCcc-----cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------
Q psy8895         285 VKCWDLEYNKAP-----VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------------  338 (479)
Q Consensus       285 i~~wd~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------------  338 (479)
                      |++||++.....     .......+...|.+++|+|+++++++++.|++|++|+.....                     
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~  161 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW  161 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence            999998532110     001113466789999999999999999999999999984211                     


Q ss_pred             CCCCCeEEEEeCCCcEEEEECCCC--eeEEEEccCCCceEEEEEeCC--CcEEEEEcCC-cEEEEeCCCC--------eE
Q psy8895         339 TEESHPVITGSHDCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPT--LYMFASASPD-NIKQWKCPEG--------KF  405 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~--~~~l~s~s~d-~i~~w~~~~~--------~~  405 (479)
                      .++...+++|+.|++|++||...+  +++..+.+|...|.+++|+|+  +..+++++.| .|++|++.++        ..
T Consensus       162 ~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~  241 (330)
T 2hes_X          162 HPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC  241 (330)
T ss_dssp             CSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence            123467999999999999999876  678889999999999999998  6788888877 4999998654        34


Q ss_pred             EeeecC-CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895         406 IQNLPG-HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       406 ~~~~~~-h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ...+.+ |...|.++++++++.|++++.||+|++||..+++
T Consensus       242 ~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~  282 (330)
T 2hes_X          242 EAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGE  282 (330)
T ss_dssp             EEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTE
T ss_pred             eeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCc
Confidence            455655 9999999999988899999999999999998874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-32  Score=268.71  Aligned_cols=290  Identities=20%  Similarity=0.317  Sum_probs=225.6

Q ss_pred             cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecc-cccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTG-HTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      ..+|.+.+.+.++++++..+++++.|++|++||+.+++....+.. |...|.++.|.++...               ++ 
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~---------------l~-  150 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSF---------------LS-  150 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSE---------------EE-
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCE---------------EE-
Confidence            457877765555555557799999999999999999998887775 8888999998765321               11 


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                                 ....++.+++|+....                                                     
T Consensus       151 -----------~~~~dg~i~iwd~~~~-----------------------------------------------------  166 (401)
T 4aez_A          151 -----------VGLGNGLVDIYDVESQ-----------------------------------------------------  166 (401)
T ss_dssp             -----------EEETTSCEEEEETTTC-----------------------------------------------------
T ss_pred             -----------EECCCCeEEEEECcCC-----------------------------------------------------
Confidence                       1123456666654210                                                     


Q ss_pred             hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEEecCCcCEEE
Q psy8895         188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA-TGKLKLSLTGHVGSVRG  266 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~-~~~~~~~~~~h~~~v~~  266 (479)
                                            +....+.+|...|.+++|+  ++++++|+.|+.|++||++ .+.....+.+|...|.+
T Consensus       167 ----------------------~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~  222 (401)
T 4aez_A          167 ----------------------TKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCG  222 (401)
T ss_dssp             ----------------------CEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             ----------------------eEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeE
Confidence                                  1123456799999999994  6799999999999999998 55677889999999999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895         267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI  346 (479)
Q Consensus       267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~  346 (479)
                      ++|+|++.++++++.|+.|++||+++.+.....  ..+...+.++.|+|++..+                        ++
T Consensus       223 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~~~~~~v~~~~~~p~~~~l------------------------l~  276 (401)
T 4aez_A          223 LAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK--TNHNAAVKAVAWCPWQSNL------------------------LA  276 (401)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTCSSEEEEE--CCCSSCCCEEEECTTSTTE------------------------EE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe--cCCcceEEEEEECCCCCCE------------------------EE
Confidence            999999999999999999999999876544322  2356678899999875433                        34


Q ss_pred             EEe--CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEc--CC-cEEEEeCCCCeEE--eeecCCcceEEEE
Q psy8895         347 TGS--HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASAS--PD-NIKQWKCPEGKFI--QNLPGHNAIINSI  419 (479)
Q Consensus       347 sgs--~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--~d-~i~~w~~~~~~~~--~~~~~h~~~v~~l  419 (479)
                      +|+  .|+.|++||+.+++++..+. +...|.+++|+|++..+++++  .+ .+++|+..+++..  ..+.+|...|.++
T Consensus       277 ~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~  355 (401)
T 4aez_A          277 TGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS  355 (401)
T ss_dssp             EECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred             EecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence            443  78999999999999888885 667899999999999988843  44 5999999887654  4477999999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      +++|++ +|++++.||.|++||+.+++.+++
T Consensus       356 ~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~  386 (401)
T 4aez_A          356 ALSPDGRILSTAASDENLKFWRVYDGDHVKR  386 (401)
T ss_dssp             EECTTSSEEEEECTTSEEEEEECCC------
T ss_pred             EECCCCCEEEEEeCCCcEEEEECCCCccccc
Confidence            999999 899999999999999999877654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=2.6e-32  Score=261.69  Aligned_cols=235  Identities=19%  Similarity=0.324  Sum_probs=194.8

Q ss_pred             eeEEEecCCCccEEEEEE-----cC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCCCEE
Q psy8895         210 KLYRVISGHLGWVRCVAV-----EP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRHPYL  276 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~-----~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~l  276 (479)
                      ....++.+|.+.|.+++|     ++ ++++|++|+.|++|++||+.+.       .....+.+|...|.+++|+|++.++
T Consensus        12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred             eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence            445678999999999999     76 8999999999999999998753       3566789999999999999999999


Q ss_pred             EEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------C--------
Q psy8895         277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------T--------  339 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------~--------  339 (479)
                      ++++.|++|++||+++++.....  ..+...|.+++|+|++..+++++.|++|++|+.....         .        
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRF--VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEE--ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEE--cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            99999999999999876654322  3467789999999999999999999999999974210         0        


Q ss_pred             --CC----------CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC-eE
Q psy8895         340 --EE----------SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG-KF  405 (479)
Q Consensus       340 --~~----------~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~-~~  405 (479)
                        +.          ...+++++.|++|++|| ...+....+.+|...|++++|+|++.+|++++.|. |++||+.+. ..
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~  248 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP  248 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC
T ss_pred             eccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc
Confidence              01          15789999999999999 45677788899999999999999999999998875 999998443 33


Q ss_pred             EeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895         406 IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       406 ~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      ...+ .+...|.+++|+|++.+++++.|+.|++||+.++....
T Consensus       249 ~~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~  290 (343)
T 2xzm_R          249 QREF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAP  290 (343)
T ss_dssp             SEEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCS
T ss_pred             ceee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCc
Confidence            3333 34556999999999966667778999999999876543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.6e-32  Score=264.94  Aligned_cols=232  Identities=27%  Similarity=0.485  Sum_probs=198.6

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc------------------CEEEEEEcCCCCEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG------------------SVRGLTVSPRHPYLFS  278 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~------------------~v~~v~~~~~~~~l~s  278 (479)
                      +|.+.|.+++|+|+|++|++|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|+++++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999987 78999999999998887766542                  3899999999999999


Q ss_pred             EECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------C-C
Q psy8895         279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------E-E  341 (479)
Q Consensus       279 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~-~  341 (479)
                      |+.|+.|++||+++.+.....  ..+...|.++.|+|++..+++++.|+++++|+......                + +
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCcEEEEE--ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence            999999999999876544322  34667899999999999999999999999999865321                1 4


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEE-------ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC----------
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTL-------TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG----------  403 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~----------  403 (479)
                      ...+++|+.|++|++||+++++.+..+       .+|...|++++|+|++.++++++.|+ |++||+.+.          
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            568999999999999999999887776       57899999999999999999998775 999998653          


Q ss_pred             --eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         404 --KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       404 --~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                        .+...+.+|...|.++++++++ +|++|+.|+.|++||.+++.++..++
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~  349 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  349 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence              3456778999999999999988 89999999999999999998887664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.8e-32  Score=292.80  Aligned_cols=342  Identities=21%  Similarity=0.340  Sum_probs=260.1

Q ss_pred             ceEEEeecccceeEeeE--------------------------EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEe
Q psy8895           8 KLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD   61 (479)
Q Consensus         8 ~~~~~~~g~~~~v~~~~--------------------------~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd   61 (479)
                      +++++|.+|.+.|+++.                          .+..+.+|.++|++++|+|++++||+|+.||+|++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34567788888777764                          3556778999999999999999999999999999999


Q ss_pred             ecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccc
Q psy8895          62 VRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLN  141 (479)
Q Consensus        62 ~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  141 (479)
                      +.+++.+.++.+|.+.+.++.|.++.+.     ++                      ....++.+++|++...       
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~-----l~----------------------~~~~dg~i~vw~~~~~-------  129 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPY-----VL----------------------SGSDDLTVKLWNWENN-------  129 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSE-----EE----------------------EEETTSEEEEEEGGGT-------
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCE-----EE----------------------EEcCCCEEEEEECCCC-------
Confidence            9999999999999999999999876432     11                      1123456777764310       


Q ss_pred             hhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCcc
Q psy8895         142 LQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW  221 (479)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  221 (479)
                                                                                         ......+.+|...
T Consensus       130 -------------------------------------------------------------------~~~~~~~~~~~~~  142 (814)
T 3mkq_A          130 -------------------------------------------------------------------WALEQTFEGHEHF  142 (814)
T ss_dssp             -------------------------------------------------------------------SEEEEEEECCSSC
T ss_pred             -------------------------------------------------------------------ceEEEEEcCCCCc
Confidence                                                                               0112345678999


Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      |.+++|+| +++.|++++.|+.|++||+.++.....+..+. ..+.+++|+|  ++.++++++.|+.|++||+++.+...
T Consensus       143 v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~  222 (814)
T 3mkq_A          143 VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (814)
T ss_dssp             EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEE
T ss_pred             EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEE
Confidence            99999999 88999999999999999999888777776665 7899999999  99999999999999999998765443


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCC-CeEEEEeCCCcEEEEEC
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EES-HPVITGSHDCTIRLWDL  359 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~-~~l~sgs~d~~v~iwd~  359 (479)
                      ..  ..+...+.++.|+|++..+++++.|+.|++|+......                 +.. ..+++.+.|+.+.+|++
T Consensus       223 ~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (814)
T 3mkq_A          223 TL--EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL  300 (814)
T ss_dssp             EE--ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEEC
T ss_pred             EE--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEc
Confidence            22  23567899999999999999999999999999875321                 122 22355556777888887


Q ss_pred             CCCeeEEE-------------------------------------------EccCCCceEEEEEeCCCcEEEEEcCCcEE
Q psy8895         360 AAGKSLCT-------------------------------------------LTNHKKSVRSVALHPTLYMFASASPDNIK  396 (479)
Q Consensus       360 ~~~~~~~~-------------------------------------------~~~h~~~v~~i~~~~~~~~l~s~s~d~i~  396 (479)
                      ....+...                                           +..+...+++++|+|++.++++++++.+.
T Consensus       301 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~  380 (814)
T 3mkq_A          301 GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYV  380 (814)
T ss_dssp             SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEE
T ss_pred             CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEE
Confidence            64322111                                           12344567899999999999999987899


Q ss_pred             EEeCCCCeEE-----------------------------eeecCCcceEEEEEEcCCC----EEEEEeCCCcEEEEecCC
Q psy8895         397 QWKCPEGKFI-----------------------------QNLPGHNAIINSICVNNEG----VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       397 ~w~~~~~~~~-----------------------------~~~~~h~~~v~~l~~~~~~----~l~sg~~dg~i~lWd~~~  443 (479)
                      +|+.......                             ..+.+|...+.+++++|++    .|++++.|++|++||+.+
T Consensus       381 i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~  460 (814)
T 3mkq_A          381 IYTALAWRNKAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDN  460 (814)
T ss_dssp             EEETTTTEEEEEEECSEEEECTTSSCEEEECTTCCEEEEETTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTT
T ss_pred             EEECccccccCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCc
Confidence            9986533211                             1223455566677778886    788888888888888888


Q ss_pred             CeEEEEEEE
Q psy8895         444 GYNFQRLQV  452 (479)
Q Consensus       444 ~~~~~~~~~  452 (479)
                      ++.+..++.
T Consensus       461 ~~~~~~~~~  469 (814)
T 3mkq_A          461 GTLVRRIDV  469 (814)
T ss_dssp             CCEEEEESS
T ss_pred             CcEEEEEec
Confidence            877766543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=6.3e-32  Score=258.22  Aligned_cols=281  Identities=12%  Similarity=0.101  Sum_probs=216.8

Q ss_pred             eecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccc---eEeeecccccceEEEEecCCCC-ccccceEEeccccE
Q psy8895          27 RHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA---NVYTLTGHTNTIASVVTQASEP-QVGTKTVLLESCER  102 (479)
Q Consensus        27 ~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~---~~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~~~~~  102 (479)
                      ....+|.+.|.+++|+|++++|++|+.|++|+|||+.+++   ....+.+|...+.++.|.++.. .     ++      
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----l~------   73 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ-----IY------   73 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEE-----EE------
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcE-----EE------
Confidence            3456899999999999999999999999999999999887   3455668999999998865432 1     11      


Q ss_pred             EEEeecccCceeeecccccccccccchhh-hhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccccccc
Q psy8895         103 IMFVLGTAGFLLSCLPSLLDFGTIRPWQL-QIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP  181 (479)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  181 (479)
                                      ....++.+++|++ ...                                               
T Consensus        74 ----------------~~~~dg~i~~wd~~~~~-----------------------------------------------   90 (342)
T 1yfq_A           74 ----------------VGTVQGEILKVDLIGSP-----------------------------------------------   90 (342)
T ss_dssp             ----------------EEETTSCEEEECSSSSS-----------------------------------------------
T ss_pred             ----------------EEcCCCeEEEEEeccCC-----------------------------------------------
Confidence                            1123356666654 210                                               


Q ss_pred             CCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecC--CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC---------
Q psy8895         182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISG--HLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT---------  250 (479)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~---------  250 (479)
                                                   ....+.+  |...|.+++|+| ++++++++.|+.|++||+++         
T Consensus        91 -----------------------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           91 -----------------------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             -----------------------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             -----------------------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence                                         0013446  889999999999 99999999999999999987         


Q ss_pred             CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC-CCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCe
Q psy8895         251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKT  328 (479)
Q Consensus       251 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~  328 (479)
                      ++.+..+. |...|.+++|+|++  +++++.|+.|++||++. ...........+...+.++.|+| ++..+++++.+  
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~d--  215 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID--  215 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETT--
T ss_pred             CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecC--
Confidence            66655555 88899999999987  88999999999999987 44322212234556789999999 87776655554  


Q ss_pred             EEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC------eeEEEEccCCC---------ceEEEEEeCCCcEEEEEcCC
Q psy8895         329 VKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG------KSLCTLTNHKK---------SVRSVALHPTLYMFASASPD  393 (479)
Q Consensus       329 i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~------~~~~~~~~h~~---------~v~~i~~~~~~~~l~s~s~d  393 (479)
                                             +.|++||++..      +....+..|..         .|++++|+|++.+|++++.|
T Consensus       216 -----------------------g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d  272 (342)
T 1yfq_A          216 -----------------------GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD  272 (342)
T ss_dssp             -----------------------SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT
T ss_pred             -----------------------CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC
Confidence                                   55555555444      55556666644         99999999999988888877


Q ss_pred             -cEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCCCc-EEEEec
Q psy8895         394 -NIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADNGT-MCFWDW  441 (479)
Q Consensus       394 -~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~dg~-i~lWd~  441 (479)
                       .|++||..+++.+..+.+| ...|.+++  +++ +|++++.||+ .+.|..
T Consensus       273 g~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          273 GIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             SCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             ceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence             5999999999999999998 99999999  666 9999999999 665553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=7.6e-32  Score=267.05  Aligned_cols=278  Identities=25%  Similarity=0.387  Sum_probs=216.7

Q ss_pred             cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeec
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLG  108 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (479)
                      ..+|..+|.++++  ++++|++|+.||+|++||+.+++.+.++.+|...|.++.+..  .     .              
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~-----~--------------  185 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--R-----V--------------  185 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCS--S-----E--------------
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECC--C-----E--------------
Confidence            3567788998877  789999999999999999999999999999999999988721  1     1              


Q ss_pred             ccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchh
Q psy8895         109 TAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ  188 (479)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  188 (479)
                              +.+...++.+++|+....                                                      
T Consensus       186 --------l~sg~~dg~i~vwd~~~~------------------------------------------------------  203 (435)
T 1p22_A          186 --------IITGSSDSTVRVWDVNTG------------------------------------------------------  203 (435)
T ss_dssp             --------EEEEETTSCEEEEESSSC------------------------------------------------------
T ss_pred             --------EEEEcCCCeEEEEECCCC------------------------------------------------------
Confidence                    112234567777764210                                                      


Q ss_pred             HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE---EEEecCCcCEE
Q psy8895         189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK---LSLTGHVGSVR  265 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~---~~~~~h~~~v~  265 (479)
                                           +....+.+|.+.|.+++|+  ++++++|+.|+.|++||+.++...   ..+.+|...|.
T Consensus       204 ---------------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~  260 (435)
T 1p22_A          204 ---------------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  260 (435)
T ss_dssp             ---------------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE
T ss_pred             ---------------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE
Confidence                                 1123456789999999997  469999999999999999987654   67889999999


Q ss_pred             EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE
Q psy8895         266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV  345 (479)
Q Consensus       266 ~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l  345 (479)
                      ++++  ++.++++++.|+.|++||+++.+.....  ..+...+.++.++                           ...+
T Consensus       261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~---------------------------~~~l  309 (435)
T 1p22_A          261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYR---------------------------DRLV  309 (435)
T ss_dssp             EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE--ECCSSCEEEEEEE---------------------------TTEE
T ss_pred             EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEE--cCCCCcEEEEEeC---------------------------CCEE
Confidence            9999  6779999999999999999876543322  1234456666553                           1347


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe---------EEeeecCCcce
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK---------FIQNLPGHNAI  415 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~---------~~~~~~~h~~~  415 (479)
                      ++|+.|++|++||+++++++.++.+|...|+++++  ++.++++++.| .|++||..+++         .+..+.+|.+.
T Consensus       310 ~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~  387 (435)
T 1p22_A          310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR  387 (435)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC
Confidence            88899999999999999999999999999999998  56778887766 59999986655         78889999999


Q ss_pred             EEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895         416 INSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       416 v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      |.++++ .+..|++|+.||+|++||+.++...+
T Consensus       388 v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~~~~  419 (435)
T 1p22_A          388 VFRLQF-DEFQIVSSSHDDTILIWDFLNDPAAQ  419 (435)
T ss_dssp             CCCEEE-CSSCEEECCSSSEEEEEC--------
T ss_pred             eEEEEe-CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence            999999 34489999999999999998875543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-32  Score=264.66  Aligned_cols=263  Identities=11%  Similarity=0.124  Sum_probs=204.5

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT  109 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (479)
                      +.-...|.+|+|+|||+++||+|.|++||  |..+++   ++.+|...+..+.|++++.                     
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg~---------------------   65 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLEF---------------------   65 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCCC---------------------
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCCC---------------------
Confidence            34457899999999999999999999999  766664   4479999999999876530                     


Q ss_pred             cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895         110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI  189 (479)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  189 (479)
                                   ++.++.|+...                                           ..           
T Consensus        66 -------------~~~~~~~~~~~-------------------------------------------~~-----------   78 (588)
T 2j04_A           66 -------------ENKLDFELAQQ-------------------------------------------NG-----------   78 (588)
T ss_dssp             -------------CCTTTTSCCCS-------------------------------------------SC-----------
T ss_pred             -------------cceEEEEeCCC-------------------------------------------ce-----------
Confidence                         11222221100                                           00           


Q ss_pred             HHHHhHhcCCCCCCCCCCcceeEEEe-cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc-----C
Q psy8895         190 IQQAKAKALPMPKPQWHAPWKLYRVI-SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG-----S  263 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~-----~  263 (479)
                                              .+ .+|...|.+++|+|+|++||+++.||.|++||.++  +...+. |..     .
T Consensus        79 ------------------------~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           79 ------------------------LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ------------------------SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ------------------------EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence                                    00 13567899999999999999999999999999654  555666 665     4


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCc--c-------cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA--P-------VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~-------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                      +.+++|||||++|++|+.||+|++||+..+..  +       ......++...|.+++|+|++  ++             
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--La-------------  196 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LV-------------  196 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EE-------------
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EE-------------
Confidence            99999999999999999999999999987642  0       111123456789999999986  43             


Q ss_pred             CCCCCCCCCeEEEEeCCCcEEEEECCCCe---eEEEE-ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895         335 DDSATEESHPVITGSHDCTIRLWDLAAGK---SLCTL-TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       335 ~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---~~~~~-~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~  410 (479)
                                  +++.|++|++||+..++   ...++ .+|...|.+++|+  +..+++++++.|++||..+++......
T Consensus       197 ------------ass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~  262 (588)
T 2j04_A          197 ------------AALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKT  262 (588)
T ss_dssp             ------------EEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEEC
T ss_pred             ------------EEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEc
Confidence                        45567777788877665   23566 4788999999999  588888887789999999888755455


Q ss_pred             CCcceEEEEEE--cCCC-EEEEEeCCCcEEEEecC
Q psy8895         411 GHNAIINSICV--NNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       411 ~h~~~v~~l~~--~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +|.+.|+.+.+  +|++ .|+++++||+ ++|..+
T Consensus       263 gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          263 GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence            89999999999  9999 8999999999 999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=6.6e-32  Score=260.17  Aligned_cols=234  Identities=15%  Similarity=0.177  Sum_probs=188.6

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeC------CCeEEEEECCCCce----EEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSA------DKIIKVWDLATGKL----KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV  285 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~------d~~i~iWd~~~~~~----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  285 (479)
                      .+|.+.|.+++|+|||++|++||.      |+.|++|+..++..    .....+|...|.+++|+|++. +++++.|++|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            469999999999999999999997      78899999877643    234567888999999999985 5678899999


Q ss_pred             EEEECCCCCcccCC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CC-CCeE
Q psy8895         286 KCWDLEYNKAPVQP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EE-SHPV  345 (479)
Q Consensus       286 ~~wd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~-~~~l  345 (479)
                      ++||+.+++.....  ....+...|.+++|+|+++++++++.|++|++|+......                 .. ...+
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~  197 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF  197 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCE
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCcee
Confidence            99999876543221  1235677899999999999999999999999999865321                 12 2468


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICV  421 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~  421 (479)
                      ++++.|++|++||+++++++..+.  .|...+++++|+|+ +.+|++++.| .|++||+.+++.+..+.+|...|++++|
T Consensus       198 ~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~  277 (357)
T 4g56_B          198 LSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAY  277 (357)
T ss_dssp             EEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEE
T ss_pred             eeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEE
Confidence            999999999999999988766543  56778999999997 5688888776 5999999999999999999999999999


Q ss_pred             cCCC--EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         422 NNEG--VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       422 ~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|++  +|++|+.|++|+|||+++++.++.+
T Consensus       278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~  308 (357)
T 4g56_B          278 SYHSSPFLASISEDCTVAVLDADFSEVFRDL  308 (357)
T ss_dssp             CSSSSCCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cCCCCCEEEEEeCCCEEEEEECCCCcEeEEC
Confidence            9876  6999999999999999999877543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.8e-31  Score=249.10  Aligned_cols=206  Identities=21%  Similarity=0.316  Sum_probs=169.1

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC--CceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT--GKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~--~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd  289 (479)
                      ++.+|.+.|.+++|+|+|++|++|+.|++|+|||+..  ++.+..+.+|.++|.+++|+++  +.+|++|+.|++|++||
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd   83 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK   83 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence            5679999999999999999999999999999999974  3667889999999999999864  88999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe--eE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK--SL  365 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~--~~  365 (479)
                      +++++.........+...|.++.|+|+  +..                         +++|+.|++|++||++.+.  ..
T Consensus        84 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~-------------------------l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPM-------------------------LLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             BSSSCBCCCEEECCCSSCEEEEEECCGGGCSE-------------------------EEEEETTSEEEEEEBCSSSCBCC
T ss_pred             cCCCceEEEEEeecCCCceeEEEeCcCCCCcE-------------------------EEEEECCCcEEEEEecCCCceee
Confidence            986532111111235677999999886  444                         4566667777777776542  23


Q ss_pred             EEEccCCCceEEEEEeCC-------------CcEEEEEcCCc-EEEEeCCCCe----EEeeecCCcceEEEEEEcCC---
Q psy8895         366 CTLTNHKKSVRSVALHPT-------------LYMFASASPDN-IKQWKCPEGK----FIQNLPGHNAIINSICVNNE---  424 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~-------------~~~l~s~s~d~-i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~---  424 (479)
                      ..+.+|...|.+++|+|+             +.+|++++.|. |++||..+++    ....+.+|...|.+++|+|+   
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            566789999999999997             46888888775 9999987765    56789999999999999997   


Q ss_pred             C-EEEEEeCCCcEEEEecCCC
Q psy8895         425 G-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      + +|++++.|++|+|||++++
T Consensus       219 ~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          219 RSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             SEEEEEEETTSCEEEEEESST
T ss_pred             ceEEEEEECCCcEEEEEeCCC
Confidence            3 8999999999999999875

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.1e-30  Score=248.57  Aligned_cols=266  Identities=20%  Similarity=0.283  Sum_probs=215.9

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEe---eec--ccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVY---TLT--GHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~---~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      .+|.++|.+++|+|++++|++++ |++|++||+.+++...   .+.  +|...+.++.|.++...     ++        
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----l~--------  113 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT-----LI--------  113 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSE-----EE--------
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCE-----EE--------
Confidence            48999999999999999999999 9999999998876433   333  78888999988765321     11        


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                                    ....++.+++|+....+                                                 
T Consensus       114 --------------~~~~d~~i~~~d~~~~~-------------------------------------------------  130 (337)
T 1gxr_A          114 --------------VGGEASTLSIWDLAAPT-------------------------------------------------  130 (337)
T ss_dssp             --------------EEESSSEEEEEECCCC--------------------------------------------------
T ss_pred             --------------EEcCCCcEEEEECCCCC-------------------------------------------------
Confidence                          11123456666532100                                                 


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV  264 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v  264 (479)
                                              ......+.+|...|.+++|+|+++++++++.|+.|++||+++++....+.+|...|
T Consensus       131 ------------------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i  186 (337)
T 1gxr_A          131 ------------------------PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             -------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             ------------------------cceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCce
Confidence                                    01122456788999999999999999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------  338 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------  338 (479)
                      .+++|+|++.++++++.|+.|++||++..+.....   .....+.++.|+|++..+++++.++.+++|+.....      
T Consensus       187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~  263 (337)
T 1gxr_A          187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL  263 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEECCCCceEeee---cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcC
Confidence            99999999999999999999999999876554332   345679999999999999999999999999986532      


Q ss_pred             ----------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895         339 ----------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKC  400 (479)
Q Consensus       339 ----------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~  400 (479)
                                .++...+++++.|+.|++||+.+++.+... .|...|.+++|+|++.++++++.|. +++|++
T Consensus       264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence                      134567999999999999999998887554 5788999999999999998888775 999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.3e-32  Score=267.71  Aligned_cols=202  Identities=17%  Similarity=0.277  Sum_probs=160.8

Q ss_pred             ccEEEEEEcCCC--cEEEEEeCCCeEEEEECCCCceE---------------------------------------EE-E
Q psy8895         220 GWVRCVAVEPGN--EWFATGSADKIIKVWDLATGKLK---------------------------------------LS-L  257 (479)
Q Consensus       220 ~~v~~~~~~~~g--~~l~sgs~d~~i~iWd~~~~~~~---------------------------------------~~-~  257 (479)
                      +.|.+++|+|++  .+|++++.|++|++||+.++...                                       .. .
T Consensus        94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (447)
T 3dw8_B           94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA  173 (447)
T ss_dssp             CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred             CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence            678999999998  79999999999999998764432                                       12 3


Q ss_pred             ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC------CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEE
Q psy8895         258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ------PGSMDSESGIFSMTFDNSG-SRLITTEADKTVK  330 (479)
Q Consensus       258 ~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~  330 (479)
                      .+|...|.+++|+|++.++++| .|+.|++||++.......      .....+...+.++.|+|++ ..+          
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l----------  242 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTF----------  242 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEE----------
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEE----------
Confidence            6799999999999999999998 899999999974322111      0122456789999999986 555          


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee----EEEEccCCC------------ceEEEEEeCCCcEEEEEcCCc
Q psy8895         331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS----LCTLTNHKK------------SVRSVALHPTLYMFASASPDN  394 (479)
Q Consensus       331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h~~------------~v~~i~~~~~~~~l~s~s~d~  394 (479)
                                     ++|+.|++|++||+++++.    +..+..|..            .|++++|+|++.+|++++.+.
T Consensus       243 ---------------~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~  307 (447)
T 3dw8_B          243 ---------------VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLS  307 (447)
T ss_dssp             ---------------EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSE
T ss_pred             ---------------EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCe
Confidence                           4556666677777766655    566766665            899999999999999998866


Q ss_pred             EEEEeCCC-CeEEeeecCCcceE---------------EEEEEcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         395 IKQWKCPE-GKFIQNLPGHNAII---------------NSICVNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       395 i~~w~~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      |++||+.+ ++.+..+.+|...+               ..++|+|++ +|++|+.||.|++||+.+++.+
T Consensus       308 v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          308 VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             EEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             EEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence            99999987 88888888886432               348999998 8999999999999999999776

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.8e-31  Score=247.19  Aligned_cols=245  Identities=20%  Similarity=0.343  Sum_probs=188.8

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecc
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGT  109 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (479)
                      .+|...|++++|+|++++|||||.|++|+|||+++++.+.++.+|...+.+......       .          ++.  
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~-------~----------l~s--  124 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY-------I----------LSS--  124 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETT-------E----------EEE--
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCC-------E----------EEE--
Confidence            578889999999999999999999999999999999999999999887766554221       0          000  


Q ss_pred             cCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhH
Q psy8895         110 AGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI  189 (479)
Q Consensus       110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  189 (479)
                                ....+.++.|+..                                                         
T Consensus       125 ----------~~~~~~~~~~~~~---------------------------------------------------------  137 (318)
T 4ggc_A          125 ----------GSRSGHIHHHDVR---------------------------------------------------------  137 (318)
T ss_dssp             ----------EETTSEEEEEETT---------------------------------------------------------
T ss_pred             ----------EecCCceEeeecC---------------------------------------------------------
Confidence                      0011111111100                                                         


Q ss_pred             HHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEEecCCcCEE
Q psy8895         190 IQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSLTGHVGSVR  265 (479)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~~~h~~~v~  265 (479)
                                       ........+.+|...+.++.+.++++++++++.|+.|++||+.+++.    ......|.+.|.
T Consensus       138 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~  200 (318)
T 4ggc_A          138 -----------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK  200 (318)
T ss_dssp             -----------------SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEE
T ss_pred             -----------------CCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceE
Confidence                             00112335678999999999999999999999999999999987653    355677888999


Q ss_pred             EEEEcCCCCEEE---EEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         266 GLTVSPRHPYLF---SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       266 ~v~~~~~~~~l~---s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      +++++|++..++   +++.++.|++||.+.......   ......+..+.+.+.+..+++                    
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~--------------------  257 (318)
T 4ggc_A          201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA---VDAHSQVCSILWSPHYKELIS--------------------  257 (318)
T ss_dssp             EEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE---EECSSCEEEEEEETTTTEEEE--------------------
T ss_pred             EEEecCCCCcEEEEEecCCCCEEEEEeccccccccc---ccceeeeeeeeecccccceEE--------------------
Confidence            999999876443   567889999999876554322   123456778888887776543                    


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG  403 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~  403 (479)
                         ++|+.|++|++||+++++++.++++|.+.|++++|+|++.+|++++.|+ |++||+.+.
T Consensus       258 ---~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          258 ---GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             ---EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             ---EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence               3455789999999999999999999999999999999999999999885 999998654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-31  Score=283.62  Aligned_cols=219  Identities=21%  Similarity=0.269  Sum_probs=176.2

Q ss_pred             ecCCCccEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         215 ISGHLGWVRCVAVEPG--NEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      +.+|.+.|.+++|+|+  +++|++|+.||.|++||+.+++  ....+.+|...|.+++|+|+  +..+++++.|+.|++|
T Consensus        49 l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vw  128 (753)
T 3jro_A           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVV  128 (753)
T ss_dssp             ECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             ccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEE
Confidence            4468889999999987  9999999999999999999986  66788899999999999999  9999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC----ee
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG----KS  364 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~----~~  364 (479)
                      |++............+...+.++.|+|....... .           .....+...+++|+.||+|++||++++    ..
T Consensus       129 dl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~-~-----------~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~  196 (753)
T 3jro_A          129 EFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG-E-----------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL  196 (753)
T ss_dssp             ECCSSSCCCCEEEECCSSCEEEEEECCCC---------------------CGGGCCEEEEETTSCEEEEEEETTTTEEEE
T ss_pred             EeecCCCcceeEeecCCCceEEEEecCccccccc-c-----------cccCCCCCEEEEEECCCeEEEEeccCCccccee
Confidence            9986633222222345678999999885211100 0           000123456889999999999999876    56


Q ss_pred             EEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCe-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         365 LCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGK-----FIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ..++.+|...|++++|+|+   +.++++++.|+ |++||..+++     ......+|...|++++|+|++ ++++|+.||
T Consensus       197 ~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg  276 (753)
T 3jro_A          197 ESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN  276 (753)
T ss_dssp             EEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSS
T ss_pred             eeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCC
Confidence            6778899999999999999   89999998775 9999998764     334456688999999999998 899999999


Q ss_pred             cEEEEecCCCe
Q psy8895         435 TMCFWDWRTGY  445 (479)
Q Consensus       435 ~i~lWd~~~~~  445 (479)
                      .|++||+.++.
T Consensus       277 ~I~vwd~~~~~  287 (753)
T 3jro_A          277 KVTLWKENLEG  287 (753)
T ss_dssp             CEECCBCCSSS
T ss_pred             EEEEEecCCCC
Confidence            99999998653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-30  Score=272.04  Aligned_cols=240  Identities=23%  Similarity=0.411  Sum_probs=205.9

Q ss_pred             ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCC-----ceEEEEecCCcCEEEEEEcCCCCEEEEEECC
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATG-----KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD  282 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d  282 (479)
                      .+....+.+|.+.|.+++|+|++ ++|+|||.|++|++||+.+.     .....+.+|...|.+++|+|++++|++|+.|
T Consensus       372 l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~D  451 (694)
T 3dm0_A          372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD  451 (694)
T ss_dssp             SEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCC
Confidence            34556789999999999999864 79999999999999999763     3456789999999999999999999999999


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC--------------------CCC-
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA--------------------TEE-  341 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~--------------------~~~-  341 (479)
                      ++|++||+.++......  ..+...|.++.|+|++..+++++.|++|++|+.....                    .+. 
T Consensus       452 g~v~vwd~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRF--VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             SEEEEEETTTTEEEEEE--ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             CcEEEEECCCCcceeEE--eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            99999999876554322  3567789999999999999999999999999964321                    011 


Q ss_pred             -CCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         342 -SHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       342 -~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                       ...+++|+.|++|++||++.++...++.+|...|++++|+|++.+|++++.|. |++||+.+++.+..+..+ ..|.++
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~  608 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL  608 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE
Confidence             24689999999999999999999999999999999999999999999998875 999999999988877654 579999


Q ss_pred             EEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         420 CVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       420 ~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +|+|++.+++++.|+.|++||++++..++.+.
T Consensus       609 ~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~  640 (694)
T 3dm0_A          609 CFSPNRYWLCAATEHGIKIWDLESKSIVEDLK  640 (694)
T ss_dssp             EECSSSSEEEEEETTEEEEEETTTTEEEEEEC
T ss_pred             EEcCCCcEEEEEcCCCEEEEECCCCCChhhhc
Confidence            99999965556667789999999998887764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-31  Score=262.34  Aligned_cols=282  Identities=15%  Similarity=0.172  Sum_probs=217.9

Q ss_pred             CCcccceEEEEEccCCceEEEecCCCeEEEEeecc----cceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          30 HGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT----KANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        30 ~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      .+|.+.|++++|+|++++||+|+.|++|++||+.+    .+.+..+.+|...|.++.|.++...    .++         
T Consensus        64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~l~---------  130 (416)
T 2pm9_A           64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN----VLA---------  130 (416)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT----BEE---------
T ss_pred             EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC----EEE---------
Confidence            36899999999999999999999999999999988    4578889999999999999765221    111         


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                   +...++.+++|++...+...                                   ......      
T Consensus       131 -------------s~~~dg~v~iwd~~~~~~~~-----------------------------------~~~~~~------  156 (416)
T 2pm9_A          131 -------------SGGNNGEIFIWDMNKCTESP-----------------------------------SNYTPL------  156 (416)
T ss_dssp             -------------EECSSSCEEBCBTTTTSSCT-----------------------------------TTCCCB------
T ss_pred             -------------EEcCCCeEEEEECCCCcccc-----------------------------------cccccc------
Confidence                         12245678888764211000                                   000000      


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecC----
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGH----  260 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----  260 (479)
                                               ....+.+|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|    
T Consensus       157 -------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  211 (416)
T 2pm9_A          157 -------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNS  211 (416)
T ss_dssp             -------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSS
T ss_pred             -------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecccccc
Confidence                                     00013468899999999998 789999999999999999999998888876    


Q ss_pred             --CcCEEEEEEcCCC-CEEEEEECCC---cEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEe
Q psy8895         261 --VGSVRGLTVSPRH-PYLFSCGDDR---TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYK  333 (479)
Q Consensus       261 --~~~v~~v~~~~~~-~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~  333 (479)
                        ...|.+++|+|++ .++++++.|+   .|++||++............+...+.++.|+| ++..+++++.|+.|++|+
T Consensus       212 ~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          212 GIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             ccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence              7899999999997 5889999998   99999998754332222114667899999999 899999999999999999


Q ss_pred             CCCCCC-----------------CCC-CeEEEEeCCCcEEEEECCCCeeEEEEc--------------------------
Q psy8895         334 EDDSAT-----------------EES-HPVITGSHDCTIRLWDLAAGKSLCTLT--------------------------  369 (479)
Q Consensus       334 ~~~~~~-----------------~~~-~~l~sgs~d~~v~iwd~~~~~~~~~~~--------------------------  369 (479)
                      ......                 ++. ..+++++.|+.|++||+...+......                          
T Consensus       292 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (416)
T 2pm9_A          292 PESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKP  371 (416)
T ss_dssp             SSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCC
T ss_pred             CCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccc
Confidence            765321                 233 689999999999999998765322211                          


Q ss_pred             ---------cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895         370 ---------NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG  403 (479)
Q Consensus       370 ---------~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~  403 (479)
                               .|..++++++|+|+++++++++.|+ |++|++.+.
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          372 SVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                     1667888999999999999999775 999998754

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-30  Score=239.96  Aligned_cols=239  Identities=21%  Similarity=0.292  Sum_probs=203.6

Q ss_pred             cceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEE
Q psy8895         208 PWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKC  287 (479)
Q Consensus       208 ~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~  287 (479)
                      ..+....+.+|.+.|.+++| |++++|++|+.||.|++||+.+++....+..|...|.+++|+|++.++++++.|+.+++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            34667789999999999999 89999999999999999999999988999999999999999999999999999999999


Q ss_pred             EECCCCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeC
Q psy8895         288 WDLEYNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSH  350 (479)
Q Consensus       288 wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~  350 (479)
                      |++........ .....+...+.++.|  ++..+++++.|+.+++|+.....                ......+++++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            99875432111 111345678999998  46799999999999999932210                014567999999


Q ss_pred             CCcEEEEECCCCeeEEEEcc-CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895         351 DCTIRLWDLAAGKSLCTLTN-HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS  429 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~-h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~s  429 (479)
                      |+.|++||  ..+....+.. |...|.+++|+|++.+++++.++.+++||..+++.+..+.+|...|.+++++|++.|++
T Consensus       164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~  241 (313)
T 3odt_A          164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVS  241 (313)
T ss_dssp             TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEE
T ss_pred             CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEE
Confidence            99999999  4567777776 89999999999999944444444699999999999999999999999999999999999


Q ss_pred             EeCCCcEEEEecCCCeEEEEEE
Q psy8895         430 GADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       430 g~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ++.||.|++||+++++.++.++
T Consensus       242 ~~~dg~v~iwd~~~~~~~~~~~  263 (313)
T 3odt_A          242 CGEDRTVRIWSKENGSLKQVIT  263 (313)
T ss_dssp             EETTSEEEEECTTTCCEEEEEE
T ss_pred             EecCCEEEEEECCCCceeEEEe
Confidence            9999999999999998877664

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=2.9e-30  Score=239.00  Aligned_cols=207  Identities=12%  Similarity=0.089  Sum_probs=156.2

Q ss_pred             CCCccEEEEEEcCCCcEEEEEe--CCCeEEEEEC-CCCceEEEEecCCcCEEEEEEcC---CCCEEEEEECCCcEEEEEC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGS--ADKIIKVWDL-ATGKLKLSLTGHVGSVRGLTVSP---RHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs--~d~~i~iWd~-~~~~~~~~~~~h~~~v~~v~~~~---~~~~l~s~~~d~~i~~wd~  290 (479)
                      +|...|..+   ++|+++.+++  .|+.|++|++ .+|+.+..+.+|...+..++|++   ++..|++++.|++|++||+
T Consensus       134 g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl  210 (356)
T 2w18_A          134 GNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNL  210 (356)
T ss_dssp             EEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEET
T ss_pred             CCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEEC
Confidence            455556554   5677776654  5999999999 45888888899999999999999   7899999999999999999


Q ss_pred             CCCCcccCCC-CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-
Q psy8895         291 EYNKAPVQPG-SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-  368 (479)
Q Consensus       291 ~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-  368 (479)
                      ++++...... .......+.+++|+|++..+++++.+..+  |           .+++|+.|++|++||..+++.+..+ 
T Consensus       211 ~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~--w-----------~laSGs~D~tIklWd~~tgk~l~v~~  277 (356)
T 2w18_A          211 KTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK--E-----------SESLRSPVFQLIVINPKTTLSVGVML  277 (356)
T ss_dssp             TTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------------------------CCEEEEEEETTTTEEEEEEE
T ss_pred             CCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc--c-----------eeeccCCCcEEEEEECCCCEEEEEEE
Confidence            9887654321 11123467888999999999888765432  3           3689999999999999999887765 


Q ss_pred             ----ccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEE-EEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         369 ----TNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIIN-SICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       369 ----~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~-~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                          .+|...+.+..++  +.++++++.| .|++||+.++++++++.+|...+. +++|+||+ +|+||+.|++|||||+
T Consensus       278 ~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          278 YCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             eeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence                3666554444443  7788998877 599999999999999999987654 68999999 8999999999999995

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.98  E-value=3.2e-29  Score=241.51  Aligned_cols=236  Identities=17%  Similarity=0.286  Sum_probs=209.7

Q ss_pred             EEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         212 YRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      ...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++....+.+|...|.+++|+|++.++++++.|+.|++||++
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCCC---------------------------
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSAT---------------------------  339 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~~---------------------------  339 (479)
                      +.+.....   .....+.++.|+|++..+++++.+     +.+.+|+......                           
T Consensus       105 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (369)
T 3zwl_B          105 NGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA  181 (369)
T ss_dssp             TCCEEEEE---ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred             CCcEEEEe---ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence            77654332   255679999999999999999999     9999999754321                           


Q ss_pred             ---CCCCeEEEEeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc
Q psy8895         340 ---EESHPVITGSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       340 ---~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~  414 (479)
                         ++...+++++.|+.|++||+++ .+.+..+..|...|.+++|+|++.+|++++.| .+++||..+++.+..+. +..
T Consensus       182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence               2345789999999999999998 78888999999999999999999999988877 49999999999888877 777


Q ss_pred             eEEEEEEcCCC-EEEEEeCCC--------------cEEEEecCCCeEEEEEE
Q psy8895         415 IINSICVNNEG-VLVSGADNG--------------TMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg--------------~i~lWd~~~~~~~~~~~  451 (479)
                      .+.+++++|++ .+++++.++              .+++||..+++.+..++
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  312 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ  312 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence            89999999998 889998888              89999999998887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.98  E-value=1.5e-30  Score=253.17  Aligned_cols=241  Identities=18%  Similarity=0.189  Sum_probs=199.8

Q ss_pred             ceeEEEecCCCccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcC-CCCEEEEEECCCc
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSP-RHPYLFSCGDDRT  284 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~-~~~~l~s~~~d~~  284 (479)
                      .+..+.+.+|.+.|.+++|+|++ ++|++|+.|+.|++||+.+++....+.  +|...|.+++|+| ++.++++++.|+.
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            45667889999999999999999 999999999999999999888777665  6999999999999 6789999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCC-eEEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESH-PVIT  347 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~-~l~s  347 (479)
                      |++||++............+...+.++.|+|++..+++++.|+.|++|+.....                .+... .+++
T Consensus       143 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s  222 (383)
T 3ei3_B          143 TTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMAT  222 (383)
T ss_dssp             EEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEE
T ss_pred             EEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEE
Confidence            999999854322222223345779999999999999999999999999974321                12334 7999


Q ss_pred             EeCCCcEEEEECCC----CeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCCeEEeeecCCc--------
Q psy8895         348 GSHDCTIRLWDLAA----GKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEGKFIQNLPGHN--------  413 (479)
Q Consensus       348 gs~d~~v~iwd~~~----~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~--------  413 (479)
                      |+.|++|++||+++    +..+..+ +|...|++++|+| ++.+|++++.| .+++||+.+++....+.+|.        
T Consensus       223 ~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  301 (383)
T 3ei3_B          223 SSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLT  301 (383)
T ss_dssp             EETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSC
T ss_pred             EeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccccc
Confidence            99999999999997    5666666 6999999999999 99999988877 59999999887766665443        


Q ss_pred             ---------ceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         414 ---------AIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       414 ---------~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                               +.+..++++|++.+ +|+.|+.|++||+.+++.++.++
T Consensus       302 ~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~  347 (383)
T 3ei3_B          302 PIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLR  347 (383)
T ss_dssp             CCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEEC
T ss_pred             ceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeec
Confidence                     33455777888855 88999999999999999887764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.98  E-value=8.4e-31  Score=257.94  Aligned_cols=270  Identities=11%  Similarity=0.120  Sum_probs=212.2

Q ss_pred             cCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeec
Q psy8895          29 YHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLG  108 (479)
Q Consensus        29 ~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (479)
                      +.+| ..+....|+|++++||+|+.|++|+|||+.+++....+.+|...|.++.|.++...     ++            
T Consensus        94 ~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-----l~------------  155 (420)
T 3vl1_A           94 LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEA-----LI------------  155 (420)
T ss_dssp             SCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSE-----EE------------
T ss_pred             EecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCE-----EE------------
Confidence            4455 44556688999999999999999999999999998888999999999999775321     11            


Q ss_pred             ccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchh
Q psy8895         109 TAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQ  188 (479)
Q Consensus       109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  188 (479)
                                +...++.+++|++...                                                      
T Consensus       156 ----------s~s~d~~i~iwd~~~~------------------------------------------------------  171 (420)
T 3vl1_A          156 ----------SSSQDMQLKIWSVKDG------------------------------------------------------  171 (420)
T ss_dssp             ----------EEETTSEEEEEETTTC------------------------------------------------------
T ss_pred             ----------EEeCCCeEEEEeCCCC------------------------------------------------------
Confidence                      1223466777764310                                                      


Q ss_pred             HHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC---CcCEE
Q psy8895         189 IIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH---VGSVR  265 (479)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---~~~v~  265 (479)
                                           +....+.+|.+.|.+++|+|++++|++++.|+.|++||+++++....+..|   ...+.
T Consensus       172 ---------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~  230 (420)
T 3vl1_A          172 ---------------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN  230 (420)
T ss_dssp             ---------------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred             ---------------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence                                 011245689999999999999999999999999999999999998888753   34555


Q ss_pred             EEE---------------------EcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC-EEEEE
Q psy8895         266 GLT---------------------VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS-RLITT  323 (479)
Q Consensus       266 ~v~---------------------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  323 (479)
                      +++                     |+|++.++++++.|+.|++||+++.+..... ...+...+.++.|+|++. .++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL-PSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE-CCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc-ccccCCCceeEEEeCCCCCEEEEE
Confidence            554                     5788999999999999999999876654332 123567899999999998 99999


Q ss_pred             eCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCcEEEEECCCC---------eeEEEEccCCCceE
Q psy8895         324 EADKTVKLYKEDDSAT------------------EESHPVITGSHDCTIRLWDLAAG---------KSLCTLTNHKKSVR  376 (479)
Q Consensus       324 ~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~v~iwd~~~~---------~~~~~~~~h~~~v~  376 (479)
                      +.|+.|++|+......                  .+...+++++.|++|++||+...         .....+..|...|.
T Consensus       310 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~  389 (420)
T 3vl1_A          310 YENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVS  389 (420)
T ss_dssp             ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCC
T ss_pred             eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceE
Confidence            9999999999876432                  12346899999999999998863         12234557888999


Q ss_pred             EEEEeCCCc----EEEEEcCCcEEEEeCCC
Q psy8895         377 SVALHPTLY----MFASASPDNIKQWKCPE  402 (479)
Q Consensus       377 ~i~~~~~~~----~l~s~s~d~i~~w~~~~  402 (479)
                      +++|+|++.    ++++++.+.+.+|++.+
T Consensus       390 ~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          390 QFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             EEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            999999988    77888888899999753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.97  E-value=2.4e-29  Score=251.03  Aligned_cols=234  Identities=27%  Similarity=0.426  Sum_probs=204.1

Q ss_pred             eEEEecCCCccE-EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         211 LYRVISGHLGWV-RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       211 ~~~~~~~h~~~v-~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      ....+.+|.+.| .++.+  ++++|++|+.|++|++||+.+++.+..+.+|.+.|.+++|+|++ .+++|+.|++|++||
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd  189 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD  189 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEE
Confidence            345788998885 66666  57899999999999999999999999999999999999999988 899999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEe--CCCCEEEEEeCCCeEEEEeCCCCCC----------------------------
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFD--NSGSRLITTEADKTVKLYKEDDSAT----------------------------  339 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~~~~~~~~~----------------------------  339 (479)
                      +++++.....  ..+...+.++.+.  +++..+++++.|+++++|+......                            
T Consensus       190 ~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          190 IKKGCCTHVF--EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             TTTTEEEEEE--CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             CCCCcEEEEE--CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            9877654332  2466789999998  5778999999999999999865421                            


Q ss_pred             ----------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEee
Q psy8895         340 ----------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQN  408 (479)
Q Consensus       340 ----------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~  408 (479)
                                .....+++|+.|++|++||+++++++..+.+|...|.+++|+|++..+++++.|+ |++||..+++.+..
T Consensus       268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~  347 (464)
T 3v7d_B          268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  347 (464)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEE
Confidence                      1135689999999999999999999999999999999999999999999998875 99999999999999


Q ss_pred             ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         409 LPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       409 ~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +.+|...|.+++++ +.+|++|+.||+|++||++++......
T Consensus       348 ~~~h~~~v~~~~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          348 LQGHTALVGLLRLS-DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             ECCCSSCEEEEEEC-SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCCcEEEEEEc-CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            99999999999998 469999999999999999988655443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=8.4e-30  Score=249.59  Aligned_cols=250  Identities=18%  Similarity=0.333  Sum_probs=195.5

Q ss_pred             CcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          31 GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        31 gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      +|.+.|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|...+.++.+...       .+.              
T Consensus       132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-------~l~--------------  190 (401)
T 4aez_A          132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH-------VLS--------------  190 (401)
T ss_dssp             CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETT-------EEE--------------
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCC-------EEE--------------
Confidence            48899999999999999999999999999999999999999999999999887321       111              


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                              ....++.+++|++...                                                        
T Consensus       191 --------~~~~dg~i~i~d~~~~--------------------------------------------------------  206 (401)
T 4aez_A          191 --------SGSRSGAIHHHDVRIA--------------------------------------------------------  206 (401)
T ss_dssp             --------EEETTSEEEEEETTSS--------------------------------------------------------
T ss_pred             --------EEcCCCCEEEEecccC--------------------------------------------------------
Confidence                    1223456666654310                                                        


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEc
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS  270 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~  270 (479)
                                        ......+.+|.+.|.+++|+|++++|++|+.|+.|++||+++++....+.+|...|.+++|+
T Consensus       207 ------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~  268 (401)
T 4aez_A          207 ------------------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC  268 (401)
T ss_dssp             ------------------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEEC
T ss_pred             ------------------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEEC
Confidence                              01123456799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-EEEEEE--CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895         271 PRHP-YLFSCG--DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT  347 (479)
Q Consensus       271 ~~~~-~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s  347 (479)
                      |++. ++++++  .|+.|++||+++.+.....   .....+.++.|+|++..++++                       +
T Consensus       269 p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~-----------------------~  322 (401)
T 4aez_A          269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSPHSKEIMST-----------------------H  322 (401)
T ss_dssp             TTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEECSSSSEEEEE-----------------------E
T ss_pred             CCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEEECCCCCeEEEE-----------------------e
Confidence            9775 455554  7999999999876654332   345679999999988876542                       2


Q ss_pred             EeCCCcEEEEECCCCeeE--EEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee
Q psy8895         348 GSHDCTIRLWDLAAGKSL--CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL  409 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~  409 (479)
                      |+.|+.|++||+.+++..  ..+.+|...|.+++|+|++.++++++.|+ +++|++.+++.+...
T Consensus       323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP  387 (401)
T ss_dssp             CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred             ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence            446778888888875544  34678999999999999999999998775 999999998876654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-31  Score=267.47  Aligned_cols=270  Identities=11%  Similarity=0.044  Sum_probs=197.5

Q ss_pred             ecCCcccceEEEEEccC------CceEEEecCCCeEEEEeecccce-----------EeeecccccceEEEEecCCCCcc
Q psy8895          28 HYHGHLSSVNTISLHPT------IDVLITAGRDSTARVWDVRTKAN-----------VYTLTGHTNTIASVVTQASEPQV   90 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~------g~~laSgs~D~~vriWd~~t~~~-----------~~~~~~h~~~v~~~~~~~~~~~~   90 (479)
                      ++.+|.+.|++|+|+|+      +.+|||||.||+|||||+.+++.           ..++.+|...|.++.|.++.   
T Consensus       202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---  278 (524)
T 2j04_B          202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---  278 (524)
T ss_dssp             EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---
T ss_pred             EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---
Confidence            45678899999999997      57999999999999999987642           24678899999999886421   


Q ss_pred             ccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccc
Q psy8895          91 GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQE  170 (479)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (479)
                         .                      +.+...++++++|++....                                   
T Consensus       279 ---~----------------------lasgs~DgtV~lWD~~~~~-----------------------------------  298 (524)
T 2j04_B          279 ---T----------------------VVCGFKNGFVAEFDLTDPE-----------------------------------  298 (524)
T ss_dssp             ---E----------------------EEEEETTSEEEEEETTBCS-----------------------------------
T ss_pred             ---e----------------------EEEEeCCCEEEEEECCCCC-----------------------------------
Confidence               1                      1122355788888753100                                   


Q ss_pred             cccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEE--EEcCCC-cEEEEEeCCCeEEEEE
Q psy8895         171 LVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCV--AVEPGN-EWFATGSADKIIKVWD  247 (479)
Q Consensus       171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~g-~~l~sgs~d~~i~iWd  247 (479)
                                                             .....+.+|.+.|.++  +|+|+| .+|+|||.|++|+|||
T Consensus       299 ---------------------------------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          299 ---------------------------------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             ---------------------------------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             ---------------------------------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence                                                   0011356899999999  578888 8999999999999999


Q ss_pred             CCCCceEEEEecCCc--CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895         248 LATGKLKLSLTGHVG--SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA  325 (479)
Q Consensus       248 ~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  325 (479)
                      ++++++...+.+|..  .|.+++|+|++..+++++.|++|++||++...+....  ..+...|.+++|+|++..+++|+.
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l--~gH~~~V~sva~Sp~g~~l~Sgs~  417 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL--VSRETTITAIGVSRLHPMVLAGSA  417 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--EECSSCEEEEECCSSCCBCEEEET
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--ecCCCceEEEEeCCCCCeEEEEEC
Confidence            999887777777753  5889999999999999999999999999876543322  246778999999999999999999


Q ss_pred             CCeEEEEeCCCCCCCC---CC------eE--EEEeCCC-cEEEEE---C---C-CCeeEEEEccCCCceEEEEEeCCC--
Q psy8895         326 DKTVKLYKEDDSATEE---SH------PV--ITGSHDC-TIRLWD---L---A-AGKSLCTLTNHKKSVRSVALHPTL--  384 (479)
Q Consensus       326 d~~i~~~~~~~~~~~~---~~------~l--~sgs~d~-~v~iwd---~---~-~~~~~~~~~~h~~~v~~i~~~~~~--  384 (479)
                      |++|++|+........   ..      .+  +..+.|+ .+++||   +   . ++..+.++.+|...|.+++|+|++  
T Consensus       418 Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~  497 (524)
T 2j04_B          418 DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAG  497 (524)
T ss_dssp             TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTT
T ss_pred             CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCc
Confidence            9999999975432111   00      11  2223344 366665   1   1 355677888999999999999995  


Q ss_pred             -cEEEEEcCCc-EEEEeCC
Q psy8895         385 -YMFASASPDN-IKQWKCP  401 (479)
Q Consensus       385 -~~l~s~s~d~-i~~w~~~  401 (479)
                       ..+|+++.++ |++|++.
T Consensus       498 ~~~lAsg~~~g~vrlw~l~  516 (524)
T 2j04_B          498 GKCYAFSNSAGLLTLEYLS  516 (524)
T ss_dssp             TTEEEEECTTSEEEEEECS
T ss_pred             cHHHHhhccCceEEEEEcc
Confidence             4899999875 9999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.97  E-value=1.2e-29  Score=247.60  Aligned_cols=237  Identities=20%  Similarity=0.238  Sum_probs=206.0

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc------eEEEEecCCcCEEEEEEcCC----C---CEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK------LKLSLTGHVGSVRGLTVSPR----H---PYL  276 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~------~~~~~~~h~~~v~~v~~~~~----~---~~l  276 (479)
                      +....+.+|.+.|.+++|+|  ++|++|+.|+.|++||+.+++      ....+.+|...|.+++|+|+    +   .+|
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            34567889999999999998  899999999999999999988      78889999999999999999    9   999


Q ss_pred             EEEECCCcEEEEECCCCCc-----ccCCCCCCC-----CCCeEEEEEe----CCCCE-EEEEeCCCeEEEEeCCC-----
Q psy8895         277 FSCGDDRTVKCWDLEYNKA-----PVQPGSMDS-----ESGIFSMTFD----NSGSR-LITTEADKTVKLYKEDD-----  336 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~-----~~~i~~~~~~----~~~~~-l~~~~~d~~i~~~~~~~-----  336 (479)
                      ++++.|+.|++||++..+.     ....  ..+     ...+.++.|+    |++.. +++++.|+.|++|+...     
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKL--DLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEE--CCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             EEEcCCCCEEEEEccCCcccccccceee--cccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence            9999999999999976654     2221  122     3789999999    99999 99999999999998765     


Q ss_pred             -CCC-----------------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEcc---C---CCceEEEEE
Q psy8895         337 -SAT-----------------------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTN---H---KKSVRSVAL  380 (479)
Q Consensus       337 -~~~-----------------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~---h---~~~v~~i~~  380 (479)
                       ...                             ++. .+++++.|+.|++||+++++.+..+..   |   ...|++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence             110                             123 789999999999999999999999998   9   999999999


Q ss_pred             eCCCcEEEEEcCC----cEEEEeCCCCeEEeeecC-------------CcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         381 HPTLYMFASASPD----NIKQWKCPEGKFIQNLPG-------------HNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       381 ~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +|++.+|++++.+    .|++||..+++.+..+.+             |...|.+++++|++ +|++++.||.|++||++
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999998876    599999999999999998             99999999999998 99999999999999999


Q ss_pred             CCeEEEEEE
Q psy8895         443 TGYNFQRLQ  451 (479)
Q Consensus       443 ~~~~~~~~~  451 (479)
                      +++.+..++
T Consensus       322 ~~~~~~~~~  330 (397)
T 1sq9_A          322 TKERITTLN  330 (397)
T ss_dssp             TTEEEEEEE
T ss_pred             CCceeEEEe
Confidence            999888776

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.97  E-value=5.3e-29  Score=247.33  Aligned_cols=264  Identities=26%  Similarity=0.391  Sum_probs=214.4

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIM  104 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (479)
                      .+..+.+|.++|.+++|+  +++|++|+.|++|++||+.+++.+.++.+|...+.++.+...       .++        
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-------~l~--------  213 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-------RVV--------  213 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-------EEE--------
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-------EEE--------
Confidence            356788999999999998  579999999999999999999999999999999998887421       011        


Q ss_pred             EeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCC
Q psy8895         105 FVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTA  184 (479)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  184 (479)
                                    ....++.+++|+...                                                   
T Consensus       214 --------------s~s~dg~i~~wd~~~---------------------------------------------------  228 (445)
T 2ovr_B          214 --------------SGSRDATLRVWDIET---------------------------------------------------  228 (445)
T ss_dssp             --------------EEETTSEEEEEESSS---------------------------------------------------
T ss_pred             --------------EEeCCCEEEEEECCC---------------------------------------------------
Confidence                          112345666665421                                                   


Q ss_pred             CchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE
Q psy8895         185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV  264 (479)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v  264 (479)
                                              .+....+.+|...|.++++  +++++++|+.|+.|++||+++++.+..+.+|...|
T Consensus       229 ------------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v  282 (445)
T 2ovr_B          229 ------------------------GQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV  282 (445)
T ss_dssp             ------------------------CCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCE
T ss_pred             ------------------------CcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCce
Confidence                                    0112345678999999998  68899999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----
Q psy8895         265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----  339 (479)
Q Consensus       265 ~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----  339 (479)
                      .++++  ++.++++++.|+.|++||+++.+.....  ..+...+.++.++  +..+++++.|+.|++|+......     
T Consensus       283 ~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          283 YSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             EEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE--cCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            99999  7789999999999999999877654332  2345567777664  67999999999999999865321     


Q ss_pred             -------------CCCCeEEEEeCCCcEEEEECCCCeeEEEE-----ccCCCceEEEEEeCCCcEEEEEcCCc-----EE
Q psy8895         340 -------------EESHPVITGSHDCTIRLWDLAAGKSLCTL-----TNHKKSVRSVALHPTLYMFASASPDN-----IK  396 (479)
Q Consensus       340 -------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~l~s~s~d~-----i~  396 (479)
                                   .....+++|+.||+|++||+.+++.+..+     ..|...|++++|+|++.++++++.|+     +.
T Consensus       357 ~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~  436 (445)
T 2ovr_B          357 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL  436 (445)
T ss_dssp             STTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred             cCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence                         12457899999999999999999998888     46788999999999999999998774     88


Q ss_pred             EEeCCC
Q psy8895         397 QWKCPE  402 (479)
Q Consensus       397 ~w~~~~  402 (479)
                      +||...
T Consensus       437 v~df~~  442 (445)
T 2ovr_B          437 VLDFDV  442 (445)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999854

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.97  E-value=8.3e-30  Score=246.33  Aligned_cols=229  Identities=14%  Similarity=0.189  Sum_probs=199.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +..|.+.|.+++|+|++++|++++.|+.|++||+.+++  ....+.+|...|.+++|+|++.++++++.|+.|++||++.
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            44589999999999999999999999999999999987  7888999999999999999999999999999999999976


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEeCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGSHD  351 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs~d  351 (479)
                      .+.........+...+.++.|+|++..+++++.++.+++|+......                     ++...+++++.|
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  163 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD  163 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence            65322221234567899999999999999999999999998764321                     234579999999


Q ss_pred             CcEEEEEC------------------CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC
Q psy8895         352 CTIRLWDL------------------AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       352 ~~v~iwd~------------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h  412 (479)
                      +.|++||+                  ..++.+..+..|...|.+++|+|++.++++++.|. +++||..+++.+..+..|
T Consensus       164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  243 (372)
T 1k8k_C          164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE  243 (372)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS
T ss_pred             CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC
Confidence            99999995                  46788888989999999999999999999988775 999999999999999999


Q ss_pred             cceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895         413 NAIINSICVNNEGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       413 ~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~  443 (479)
                      ...|.+++++|++.+++++.|+.|++||+.+
T Consensus       244 ~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          244 TLPLLAVTFITESSLVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             SCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred             CCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence            9999999999999544444999999999988

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8e-30  Score=252.10  Aligned_cols=207  Identities=22%  Similarity=0.367  Sum_probs=170.1

Q ss_pred             EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCce-------EEEEecCCcCEEEEEEcC-CCCEEEEEECCCc
Q psy8895         214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKL-------KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRT  284 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~-------~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~  284 (479)
                      .+.+|...|.+++|+|++. +|++|+.||.|++||+.++..       ...+.+|...|.+++|+| ++.++++++.|+.
T Consensus       176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~  255 (430)
T 2xyi_A          176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK  255 (430)
T ss_dssp             EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence            3557889999999999988 999999999999999987422       456778999999999999 6778999999999


Q ss_pred             EEEEECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-C
Q psy8895         285 VKCWDLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-G  362 (479)
Q Consensus       285 i~~wd~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~  362 (479)
                      |++||++........ ....+...+.++.|+|++..                        .+++|+.|++|++||++. .
T Consensus       256 i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~------------------------~l~tg~~dg~v~vwd~~~~~  311 (430)
T 2xyi_A          256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF------------------------ILATGSADKTVALWDLRNLK  311 (430)
T ss_dssp             EEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT------------------------EEEEEETTSEEEEEETTCTT
T ss_pred             EEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC------------------------EEEEEeCCCeEEEEeCCCCC
Confidence            999999865311111 11245677999999987652                        256777888888899887 5


Q ss_pred             eeEEEEccCCCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCC--------------CeEEeeecCCcceEEEEEEcCCC-
Q psy8895         363 KSLCTLTNHKKSVRSVALHPTL-YMFASASPD-NIKQWKCPE--------------GKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       363 ~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~--------------~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      .++..+..|...|++++|+|++ .+|++++.| .|++||+..              .+++..+.+|...|.+++++|++ 
T Consensus       312 ~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  391 (430)
T 2xyi_A          312 LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEP  391 (430)
T ss_dssp             SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSST
T ss_pred             CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCC
Confidence            6788888999999999999987 567777666 599999976              36677888999999999999987 


Q ss_pred             -EEEEEeCCCcEEEEecCCC
Q psy8895         426 -VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       426 -~l~sg~~dg~i~lWd~~~~  444 (479)
                       +|++++.||.|++|++.++
T Consensus       392 ~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          392 WIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TEEEEEETTSEEEEEEECHH
T ss_pred             CEEEEEECCCCEEEeEcccc
Confidence             7999999999999998764

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.2e-29  Score=246.34  Aligned_cols=227  Identities=15%  Similarity=0.230  Sum_probs=193.7

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .+|.+.|.+++|+|++++|++|+.|+.|++|| .+++....+.+|...|.+++|+|++.++++++.|+.|++||+++.+.
T Consensus       105 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  183 (425)
T 1r5m_A          105 GKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV  183 (425)
T ss_dssp             ---CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE
T ss_pred             cCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE
Confidence            35788999999999999999999999999999 67788889999999999999999999999999999999999987654


Q ss_pred             ccCCCCCCC-------------CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeE
Q psy8895         296 PVQPGSMDS-------------ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPV  345 (479)
Q Consensus       296 ~~~~~~~~~-------------~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l  345 (479)
                      .........             ...+.++.|+++ ..+++++.++.+.+|+......                 +....+
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  262 (425)
T 1r5m_A          184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL  262 (425)
T ss_dssp             EEEECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEE
T ss_pred             EEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEE
Confidence            332211110             111778888886 5688999999999999865321                 234679


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      ++++.|+.|++||++.++.+..+..|...|.+++|+|++ ++++++.+ .+++||..+++.+..+..|...|.+++++|+
T Consensus       263 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~  341 (425)
T 1r5m_A          263 LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQD  341 (425)
T ss_dssp             EEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTT
T ss_pred             EEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCC
Confidence            999999999999999999999999999999999999999 66666665 5999999999999999999999999999999


Q ss_pred             C-EEEEEeCCCcEEEEecCCCe
Q psy8895         425 G-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      + +|++++.||.|++||++++.
T Consensus       342 ~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          342 GQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             SSEEEEEETTSCEEEEECHHHH
T ss_pred             CCEEEEEECCCeEEEEECCCCc
Confidence            8 89999999999999999876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=1.2e-29  Score=244.39  Aligned_cols=183  Identities=17%  Similarity=0.322  Sum_probs=152.8

Q ss_pred             CCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEE---ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         217 GHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSL---TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       217 ~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +|...|.+++|+| ++++|++++.|+.|++||+++++....+   .+|...|.+++|+|++.++++++.|+.|++||++.
T Consensus       113 ~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            4667788999999 8999999999999999999999988888   68999999999999999999999999999999976


Q ss_pred             CCcccCC--------------------------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------
Q psy8895         293 NKAPVQP--------------------------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------  339 (479)
Q Consensus       293 ~~~~~~~--------------------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------  339 (479)
                      .+.....                          ....+...+.++.|+  +..+++++.|+.|++|+......       
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  270 (366)
T 3k26_A          193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP  270 (366)
T ss_dssp             HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred             CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence            5422100                          001156778899998  67999999999999999754321       


Q ss_pred             ------------------------CC--CCeEEEEeCCCcEEEEECCCCee----EEEEccC--CCceEEEEEeCCCcEE
Q psy8895         340 ------------------------EE--SHPVITGSHDCTIRLWDLAAGKS----LCTLTNH--KKSVRSVALHPTLYMF  387 (479)
Q Consensus       340 ------------------------~~--~~~l~sgs~d~~v~iwd~~~~~~----~~~~~~h--~~~v~~i~~~~~~~~l  387 (479)
                                              .+  ...+++|+.|+.|++||+.++++    ...+..|  ...|++++|+|++.+|
T Consensus       271 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  350 (366)
T 3k26_A          271 SESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSIL  350 (366)
T ss_dssp             TCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeE
Confidence                                    12  67899999999999999998753    4477777  7899999999999999


Q ss_pred             EEEcCCc-EEEEeCC
Q psy8895         388 ASASPDN-IKQWKCP  401 (479)
Q Consensus       388 ~s~s~d~-i~~w~~~  401 (479)
                      ++++.|. |++||+.
T Consensus       351 ~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          351 IAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEETTSEEEEEEC-
T ss_pred             EEEeCCCEEEEEEec
Confidence            9998875 9999975

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=3.7e-30  Score=243.73  Aligned_cols=207  Identities=24%  Similarity=0.323  Sum_probs=162.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd  289 (479)
                      .+.+|.+.|.+++|+|+|++|++|+.|++|+|||+.++.  .+..+.+|.+.|.+++|++  ++.+|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456899999999999999999999999999999998875  4568899999999999986  488999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee---EE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS---LC  366 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~---~~  366 (479)
                      ++++..........+...|.+++|+|+..                       ...+++|+.|++|++||++.+..   ..
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~-----------------------g~~lasgs~D~~i~lwd~~~~~~~~~~~  144 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDY-----------------------GLILACGSSDGAISLLTYTGEGQWEVKK  144 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTT-----------------------CSCEEEECSSSCEEEEEECSSSCEEECC
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCC-----------------------CcEEEEEcCCCCEEEEecCCCCCcceee
Confidence            98653211111124567788999988621                       12356677777777777775422   34


Q ss_pred             EEccCCCceEEEEEeCC-----------------CcEEEEEcCCc-EEEEeCCCC---eEEeeecCCcceEEEEEEcCC-
Q psy8895         367 TLTNHKKSVRSVALHPT-----------------LYMFASASPDN-IKQWKCPEG---KFIQNLPGHNAIINSICVNNE-  424 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~-----------------~~~l~s~s~d~-i~~w~~~~~---~~~~~~~~h~~~v~~l~~~~~-  424 (479)
                      .+.+|...|.+++|+|+                 +.+|++++.|. |++||..++   +....+.+|...|.+++|+|+ 
T Consensus       145 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~  224 (316)
T 3bg1_A          145 INNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSI  224 (316)
T ss_dssp             BTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCS
T ss_pred             eeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCC
Confidence            55689999999999997                 36788888775 999998755   467788999999999999987 


Q ss_pred             ----CEEEEEeCCCcEEEEecCC
Q psy8895         425 ----GVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       425 ----~~l~sg~~dg~i~lWd~~~  443 (479)
                          .+|++|+.|++|++||+++
T Consensus       225 ~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          225 GLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             SCSCCEEEEEETTCEEEEEECSS
T ss_pred             CCCCceEEEEcCCCeEEEEEccC
Confidence                3799999999999999886

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5e-28  Score=240.66  Aligned_cols=228  Identities=14%  Similarity=0.136  Sum_probs=186.6

Q ss_pred             ecCCCccEEEEEEcCCCcEE-EEEeCCCeEEEEECC--CCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLA--TGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~--~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      ..+|.+.|.+++|+|++++| ++|+.|+.|++||+.  +++....+.  .|...|.+++|+|++.+|++++.|+.+++|+
T Consensus        98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~  177 (450)
T 2vdu_B           98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID  177 (450)
T ss_dssp             --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            34788999999999999996 899999999999999  888887776  5678999999999999999999999999999


Q ss_pred             CCCCCccc--CCCCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEE
Q psy8895         290 LEYNKAPV--QPGSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSAT-----------------EESHPVIT  347 (479)
Q Consensus       290 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~s  347 (479)
                      +.......  ......+...+.++.|+|+   +.++++++.|++|++|+......                 .+...+++
T Consensus       178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l~s  257 (450)
T 2vdu_B          178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLLLS  257 (450)
T ss_dssp             TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEEEE
T ss_pred             cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEEEE
Confidence            97655432  1112345678999999999   89999999999999999764321                 03567999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEcc-------------------------CCCceEEEEEeCCCcEEEEEc-CC-cEEEEeC
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTN-------------------------HKKSVRSVALHPTLYMFASAS-PD-NIKQWKC  400 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~-------------------------h~~~v~~i~~~~~~~~l~s~s-~d-~i~~w~~  400 (479)
                      |+.|++|++||+++++.+..+..                         ....|.+++++|++.++++++ .+ .|++|++
T Consensus       258 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          258 AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            99999999999999998888763                         235789999999999888876 44 5999999


Q ss_pred             --CCC---eEEeeecCCcceEEEEEEcCCCEEEEEeC-------CCcEEEEecCC
Q psy8895         401 --PEG---KFIQNLPGHNAIINSICVNNEGVLVSGAD-------NGTMCFWDWRT  443 (479)
Q Consensus       401 --~~~---~~~~~~~~h~~~v~~l~~~~~~~l~sg~~-------dg~i~lWd~~~  443 (479)
                        .++   +.+..+.+| ..|.+++++|++.+++.+.       +..|++|.+..
T Consensus       338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~  391 (450)
T 2vdu_B          338 SEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL  391 (450)
T ss_dssp             CSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred             ccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence              565   677788888 7899999999876666543       55689998753

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-29  Score=251.57  Aligned_cols=246  Identities=15%  Similarity=0.250  Sum_probs=197.7

Q ss_pred             CCCcceeEEEe-cCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCC---Cc---eEEEEecCCcCEEEEEEcCCCCEE
Q psy8895         205 WHAPWKLYRVI-SGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLAT---GK---LKLSLTGHVGSVRGLTVSPRHPYL  276 (479)
Q Consensus       205 ~~~~~~~~~~~-~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~---~~---~~~~~~~h~~~v~~v~~~~~~~~l  276 (479)
                      |....+....+ .+|.+.|.+++|+| ++++|++|+.|++|++||+.+   +.   ....+ +|...|.+++|+|++.++
T Consensus        48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  126 (437)
T 3gre_A           48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAF  126 (437)
T ss_dssp             GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEE
T ss_pred             ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEE
Confidence            44455666777 89999999999999 999999999999999999876   33   23333 499999999999999999


Q ss_pred             EEEECCCcEEEEECC---CCCcccC--------CCCCC--CCCCeEEEE--EeCCCCEEEEEeCCCeEEEEeCCCCCC--
Q psy8895         277 FSCGDDRTVKCWDLE---YNKAPVQ--------PGSMD--SESGIFSMT--FDNSGSRLITTEADKTVKLYKEDDSAT--  339 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~---~~~~~~~--------~~~~~--~~~~i~~~~--~~~~~~~l~~~~~d~~i~~~~~~~~~~--  339 (479)
                      ++++.|+.|++||++   .++....        .....  ....+.++.  +++++..+++++.|+.|++|+......  
T Consensus       127 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  206 (437)
T 3gre_A          127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQ  206 (437)
T ss_dssp             EEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence            999999999999985   2221110        00001  345566766  557899999999999999999865321  


Q ss_pred             -----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEc-cCCCceEEEEEe----CCCcEEEEEcCCc-EE
Q psy8895         340 -----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHKKSVRSVALH----PTLYMFASASPDN-IK  396 (479)
Q Consensus       340 -----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~~~v~~i~~~----~~~~~l~s~s~d~-i~  396 (479)
                                       +....+++|+.|++|++||+++++++.++. .|...|++++++    |++.++++++.|. |+
T Consensus       207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~  286 (437)
T 3gre_A          207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT  286 (437)
T ss_dssp             EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred             EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence                             235679999999999999999999999886 788899999665    4577999999886 99


Q ss_pred             EEeCCCCeEEeeecC--------------------------CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         397 QWKCPEGKFIQNLPG--------------------------HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       397 ~w~~~~~~~~~~~~~--------------------------h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +||+.+++.+..+.+                          |...|++++++++.+|++|+.||.|++||+++++.++.+
T Consensus       287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  366 (437)
T 3gre_A          287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAV  366 (437)
T ss_dssp             EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEE
T ss_pred             EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEE
Confidence            999999988776653                          556688899994449999999999999999999877665


Q ss_pred             E
Q psy8895         451 Q  451 (479)
Q Consensus       451 ~  451 (479)
                      .
T Consensus       367 ~  367 (437)
T 3gre_A          367 I  367 (437)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=6.3e-29  Score=238.61  Aligned_cols=232  Identities=16%  Similarity=0.251  Sum_probs=189.9

Q ss_pred             eEEEecCCCccEEEEEEcCCCc-EEEEEeC---CCeEEEEECCCCceEEE-EecCCcCEEEEEEcCC---CCEEEEEECC
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNE-WFATGSA---DKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPR---HPYLFSCGDD  282 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~-~l~sgs~---d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~---~~~l~s~~~d  282 (479)
                      ....+.+|.+.|.+++|+|+++ ++++|+.   |+.|++||+.+++.... ..+|...|.+++|+|+   +.++++++.|
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            3456678999999999999985 4566766   99999999999877544 3478999999999998   6999999999


Q ss_pred             CcEEEEECCCCC-cccCCCCCCCCCCeEEEEE------eCCCCEEEEEeCCCeEEEEeCCCCC-----------------
Q psy8895         283 RTVKCWDLEYNK-APVQPGSMDSESGIFSMTF------DNSGSRLITTEADKTVKLYKEDDSA-----------------  338 (479)
Q Consensus       283 ~~i~~wd~~~~~-~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~d~~i~~~~~~~~~-----------------  338 (479)
                      +.|++||++..+ .....  ..+...+.++.|      ++++..+++++.|+.+++|+.....                 
T Consensus        90 g~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           90 GNLHIWNLEAPEMPVYSV--KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             SCEEEECTTSCSSCSEEE--CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CeEEEEeCCCCCccEEEE--EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            999999998765 32221  246678999855      6789999999999999999976532                 


Q ss_pred             ---------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC---CCcEEEEEcCC-cEEEEeCCCCeE
Q psy8895         339 ---------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP---TLYMFASASPD-NIKQWKCPEGKF  405 (479)
Q Consensus       339 ---------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~---~~~~l~s~s~d-~i~~w~~~~~~~  405 (479)
                               ..+...+++++.|+.|++||+++++.... ..|...|.+++|+|   ++..+++++.+ .+++||..+++.
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  246 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP  246 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET
T ss_pred             EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc
Confidence                     12345789999999999999999887544 56889999999999   88888888876 499999987765


Q ss_pred             Eeeec-----CCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCe
Q psy8895         406 IQNLP-----GHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       406 ~~~~~-----~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ...+.     +|...|.+++++|++  +|++|+.||.|++||++++.
T Consensus       247 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          247 TKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             ccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            54444     899999999999987  59999999999999998654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=1.8e-28  Score=234.12  Aligned_cols=235  Identities=14%  Similarity=0.166  Sum_probs=197.3

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCW  288 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~w  288 (479)
                      ....+|.+.|.+++|+|++++|++++.|+.|++||+.++.   ....+.+|...|.+++|+|++. ++++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEE
Confidence            3456899999999999999999999999999999998877   3445668999999999999999 99999999999999


Q ss_pred             EC-CCCCcccCCCCCC--CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---------CCCC--------------CC
Q psy8895         289 DL-EYNKAPVQPGSMD--SESGIFSMTFDNSGSRLITTEADKTVKLYKEDD---------SATE--------------ES  342 (479)
Q Consensus       289 d~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~---------~~~~--------------~~  342 (479)
                      |+ +..+....   ..  +...|.++.|+| +..+++++.|+.|++|+...         ....              ..
T Consensus        85 d~~~~~~~~~~---~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  160 (342)
T 1yfq_A           85 DLIGSPSFQAL---TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             CSSSSSSEEEC---BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             EeccCCceEec---cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecC
Confidence            99 76654221   23  677899999999 99999999999999999654         2210              12


Q ss_pred             CeEEEEeCCCcEEEEECCC-Cee--EEEEccCCCceEEEEEeC-CCcEEEEEcCCc-EEEEeCCCC------eEEeeecC
Q psy8895         343 HPVITGSHDCTIRLWDLAA-GKS--LCTLTNHKKSVRSVALHP-TLYMFASASPDN-IKQWKCPEG------KFIQNLPG  411 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~-~~~--~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~-i~~w~~~~~------~~~~~~~~  411 (479)
                      ..+++++.|+.|++||++. +..  ......|...|++++|+| ++.++++++.+. +++|+....      +....+.+
T Consensus       161 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence            2388999999999999998 442  334456888999999999 999999888775 999999876      66777777


Q ss_pred             Ccc---------eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         412 HNA---------IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       412 h~~---------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      |..         .|.+++++|++ +|++|+.||.|++||+.+++.+..++
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence            755         99999999988 89999999999999999998776553

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.97  E-value=2.3e-29  Score=249.16  Aligned_cols=241  Identities=18%  Similarity=0.203  Sum_probs=186.8

Q ss_pred             eeEEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcC-CCCEEEEEECCCcE
Q psy8895         210 KLYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTV  285 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i  285 (479)
                      +......+|...|+|++|+| ++++||+|+.||.|+|||+.++..  ...+.+|.+.|.+++|+| ++.+|++++.|++|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            34445678999999999999 567999999999999999987754  345678999999999998 68899999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CC-CCeEEEE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EE-SHPVITG  348 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~-~~~l~sg  348 (479)
                      ++||++................+.++.|++++..+++++.|+.|++|+......                +. ...+++|
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEe
Confidence            999997654332222223345577899999999999999999999999764321                11 2468899


Q ss_pred             eCCCcEEEEECCCCeeEEE---EccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcce------EEE
Q psy8895         349 SHDCTIRLWDLAAGKSLCT---LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAI------INS  418 (479)
Q Consensus       349 s~d~~v~iwd~~~~~~~~~---~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~------v~~  418 (479)
                      +.|++|++||++..+....   ..+|...|++++|+|++.+|++++.|+ |++||..+++....+..|...      +..
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  349 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK  349 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence            9999999999988664433   357999999999999999999998875 999999998877776665421      222


Q ss_pred             EEEcCCC-EEEEE------------eCCCcEEEEecCCCeEEEEE
Q psy8895         419 ICVNNEG-VLVSG------------ADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       419 l~~~~~~-~l~sg------------~~dg~i~lWd~~~~~~~~~~  450 (479)
                      ..+++++ .++++            .+++.|++||..+|..+..+
T Consensus       350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l  394 (435)
T 4e54_B          350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL  394 (435)
T ss_dssp             CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred             EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence            3445444 44433            34568999999999887654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.97  E-value=3e-28  Score=238.15  Aligned_cols=236  Identities=20%  Similarity=0.286  Sum_probs=190.4

Q ss_pred             EEEecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEe-------------cCCcCEEEEEEcC-CCCEE
Q psy8895         212 YRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLT-------------GHVGSVRGLTVSP-RHPYL  276 (479)
Q Consensus       212 ~~~~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-------------~h~~~v~~v~~~~-~~~~l  276 (479)
                      ...+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++.....+.             +|...|.+++|+| ++.++
T Consensus        36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l  115 (408)
T 4a11_B           36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF  115 (408)
T ss_dssp             EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred             eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence            346778999999999999 99999999999999999999876543332             5999999999999 77899


Q ss_pred             EEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCC---CCEEEEEeCCCeEEEEeCCCCCC--------------
Q psy8895         277 FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNS---GSRLITTEADKTVKLYKEDDSAT--------------  339 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~~~~~~~~~--------------  339 (479)
                      ++++.|+.|++||++..+.....   .....+.++.+.+.   +..+++++.++.+++|+......              
T Consensus       116 ~s~~~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTLQTADVF---NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEE---ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEeCCCeEEEeeCCCCccceec---cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999876544322   24566888988884   44999999999999999865421              


Q ss_pred             ---CCCC-eEEEEeCCCcEEEEECCCCe-eEEEE---------------ccCCCceEEEEEeCCCcEEEEEcCC-cEEEE
Q psy8895         340 ---EESH-PVITGSHDCTIRLWDLAAGK-SLCTL---------------TNHKKSVRSVALHPTLYMFASASPD-NIKQW  398 (479)
Q Consensus       340 ---~~~~-~l~sgs~d~~v~iwd~~~~~-~~~~~---------------~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w  398 (479)
                         +... .+++|+.|+.|++||++.+. ++..+               ..|...|++++|+|++.++++++.| .+++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence               2233 58899999999999998765 34444               5688899999999999999888877 49999


Q ss_pred             eCCCC-----------------------------------------------eEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895         399 KCPEG-----------------------------------------------KFIQNLPGHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       399 ~~~~~-----------------------------------------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg  430 (479)
                      |+.++                                               +.+..+.+|...|.+++++|++ +|++|
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            97654                                               4456678899999999999998 89999


Q ss_pred             eCCCcEEEEecCCCeEEEEE
Q psy8895         431 ADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       431 ~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +.||.|++||+++++.+...
T Consensus       353 ~~dg~i~iw~~~~~~~~~~~  372 (408)
T 4a11_B          353 SRDCNILAWVPSLYEPVPDD  372 (408)
T ss_dssp             ETTSCEEEEEECC-------
T ss_pred             CCCCeEEEEeCCCCCccCCC
Confidence            99999999999998876543

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=1.2e-28  Score=228.14  Aligned_cols=250  Identities=13%  Similarity=0.066  Sum_probs=180.4

Q ss_pred             CcccccC---ceEEEeecccceeEeeEEe-------eecCC--cccceEEEEEccC----CceEEEecCCCeEEEEeecc
Q psy8895           1 VWDLATG---KLKLSLTGHVGSVRGLTVI-------RHYHG--HLSSVNTISLHPT----IDVLITAGRDSTARVWDVRT   64 (479)
Q Consensus         1 ~Wd~~~~---~~~~~~~g~~~~v~~~~~~-------~~~~g--H~~~V~~l~~sp~----g~~laSgs~D~~vriWd~~t   64 (479)
                      +|+..++   ++++++.+|..+|-.+.++       ..-.|  |.+.|++|+|+||    +.++++++.+  +++|++.+
T Consensus        67 lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~  144 (356)
T 2w18_A           67 LWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTK  144 (356)
T ss_dssp             EEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETT
T ss_pred             EcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCC
Confidence            5888888   8899999999888876532       22223  5679999999999    9999999855  88999999


Q ss_pred             cceEee-ecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchh
Q psy8895          65 KANVYT-LTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQ  143 (479)
Q Consensus        65 ~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  143 (479)
                      ++.+.+ ..+|...|..+.+.++..                                                       
T Consensus       145 g~lv~ss~~g~d~~V~~~~~s~dG~-------------------------------------------------------  169 (356)
T 2w18_A          145 RRLVSSSGTLSDQQVEVMTFAEDGG-------------------------------------------------------  169 (356)
T ss_dssp             TEEEEEESSSTTCEEEEEEECTTSC-------------------------------------------------------
T ss_pred             CcEEEecccCCCCcEEEEEECCCCc-------------------------------------------------------
Confidence            888777 467776665555432110                                                       


Q ss_pred             hhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEE
Q psy8895         144 EVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVR  223 (479)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  223 (479)
                                                                                         ....+.+|...+.
T Consensus       170 -------------------------------------------------------------------~~~s~~~~~~~v~  182 (356)
T 2w18_A          170 -------------------------------------------------------------------GKENQFLMPPEET  182 (356)
T ss_dssp             -------------------------------------------------------------------EEEEEEECCCSSC
T ss_pred             -------------------------------------------------------------------eeeeeccCCCcee
Confidence                                                                               0112335677778


Q ss_pred             EEEEcC---CCcEEEEEeCCCeEEEEECCCCceEEEEecCCc---CEEEEEEcCCCCEE------------EEEECCCcE
Q psy8895         224 CVAVEP---GNEWFATGSADKIIKVWDLATGKLKLSLTGHVG---SVRGLTVSPRHPYL------------FSCGDDRTV  285 (479)
Q Consensus       224 ~~~~~~---~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l------------~s~~~d~~i  285 (479)
                      .++|++   ++++|+||+.|++|||||+++|+++.++.+|..   .+.+++|+|++.++            ++|+.|++|
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI  262 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL  262 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence            888888   779999999999999999999999999987643   67788999999876            567889999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC--EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS--RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      ++||..+++...          +..+.+ |++.  .++.+..               ....+++|+.|++|+|||+.+++
T Consensus       263 klWd~~tgk~l~----------v~~~~~-p~Gh~~~~lsg~~---------------sg~~lASgS~DgTIkIWDl~tGk  316 (356)
T 2w18_A          263 IVINPKTTLSVG----------VMLYCL-PPGQAGRFLEGDV---------------KDHCAAAILTSGTIAIWDLLLGQ  316 (356)
T ss_dssp             EEEETTTTEEEE----------EEEECC-CTTCCCCEEEEEE---------------ETTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEECCCCEEEE----------EEEeec-cCCCcceeEcccc---------------CCCEEEEEcCCCcEEEEECCCCc
Confidence            999987665321          111111 2221  0111111               13457899999999999999999


Q ss_pred             eEEEEccCCCceE-EEEEeCCCcEEEEEcCCc-EEEEeC
Q psy8895         364 SLCTLTNHKKSVR-SVALHPTLYMFASASPDN-IKQWKC  400 (479)
Q Consensus       364 ~~~~~~~h~~~v~-~i~~~~~~~~l~s~s~d~-i~~w~~  400 (479)
                      .+.++++|...+. +++|+|++++|++++.|+ |++||.
T Consensus       317 ~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          317 CTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            9999999987655 689999999999999885 999985

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=2.1e-30  Score=251.41  Aligned_cols=226  Identities=10%  Similarity=0.093  Sum_probs=183.4

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ...|.+.|.+++|+|++++|++|+.|+.|++||+.++  +....+.+|...|.+++|+|++.+|++++.|++|++||++.
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~   86 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP   86 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence            3446789999999999999999999999999999988  67778899999999999999999999999999999999987


Q ss_pred             CC-cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEeC
Q psy8895         293 NK-APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGSH  350 (479)
Q Consensus       293 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs~  350 (479)
                      .+ .........+...+.++.|+|++..+++++.|+.|++|+......                     ++...+++++.
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~  166 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA  166 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence            65 111111234677899999999999999999999999999765320                     23457999999


Q ss_pred             CCcEEEEECC------------------CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE----Ee
Q psy8895         351 DCTIRLWDLA------------------AGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF----IQ  407 (479)
Q Consensus       351 d~~v~iwd~~------------------~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~----~~  407 (479)
                      |++|++||++                  .++++..+ +|...|++++|+|++.+|++++.| .|++||..+++.    +.
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence            9999999985                  34556666 899999999999999999988877 499999998887    78


Q ss_pred             eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .+.+|...|.+++|+|++ +|++|+.|+.+ +|+..
T Consensus       246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            899999999999999999 77777766555 66654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.97  E-value=2.6e-29  Score=245.36  Aligned_cols=220  Identities=13%  Similarity=0.159  Sum_probs=135.8

Q ss_pred             ecCCCccEEEEEEcC--------CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcE
Q psy8895         215 ISGHLGWVRCVAVEP--------GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTV  285 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~--------~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i  285 (479)
                      +.||.+.|.+++|+|        |+++|||||.|++|+|||++++.....+.+|...+.+++|+|++. +|++++.|++|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            347888899999887        789999999999999999999888888888999999999999875 78999999999


Q ss_pred             EEEECCCCCcccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         286 KCWDLEYNKAPVQPGSM--DSESGIFSMTFDNSGSRLITTEADK---TVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      ++||+++.+........  .....+......+............   .+.++      ..+...+++++.|+++++||+.
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~------~~dg~~l~s~s~d~~i~vwd~~  285 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI------GSDGSGILAMCKSGAWLRWNLF  285 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE------TTTTCEEEEECTTSEEEEEEC-
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee------cCCCCEEEEEeCCCCEEEEECc
Confidence            99999876543221110  0111111221111111111111111   11111      1123445566666666666665


Q ss_pred             CCeeEEEEccCCCceEEE------------------EEeC--CCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSV------------------ALHP--TLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i------------------~~~~--~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l  419 (479)
                      .++....+..|...+..+                  .++|  ++.++++++.| .|++||..+++....+.+|...|.++
T Consensus       286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sv  365 (393)
T 4gq1_A          286 ANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDF  365 (393)
T ss_dssp             ------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEE
T ss_pred             cCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEE
Confidence            554444444443333322                  2333  34566777776 49999999999888888899999999


Q ss_pred             EEcCCC-EEEEEeCCCcEEEEec
Q psy8895         420 CVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       420 ~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      +|+||| +||++++|| +.+|.+
T Consensus       366 afspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          366 CWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             EECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEcCCCCEEEEEeCCC-eEEEEE
Confidence            999999 899988766 555554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5.7e-28  Score=232.48  Aligned_cols=187  Identities=15%  Similarity=0.188  Sum_probs=141.7

Q ss_pred             EEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC-CcccCCCCC
Q psy8895         225 VAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN-KAPVQPGSM  302 (479)
Q Consensus       225 ~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~  302 (479)
                      +++.++++.+ ++++.|++|++||+.+++.+..+. |...|.+++++++.  ++.+ .|+.|++||+... +.....   
T Consensus        64 ~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~---  136 (355)
T 3vu4_A           64 VRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDD---  136 (355)
T ss_dssp             EEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCC---
T ss_pred             EEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEe---
Confidence            3444555555 567788999999999999988887 66799999999874  3333 5789999999865 332211   


Q ss_pred             CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe---------------e-EE
Q psy8895         303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK---------------S-LC  366 (479)
Q Consensus       303 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---------------~-~~  366 (479)
                      ..  ....+.+++  ..++.                       .+|+.||+|++||+++++               + +.
T Consensus       137 ~~--~~~~~~~s~--~~la~-----------------------~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~  189 (355)
T 3vu4_A          137 IR--FGGVCEFSN--GLLVY-----------------------SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV  189 (355)
T ss_dssp             EE--EEEEEEEET--TEEEE-----------------------EESSCTTCEEEEECCC------------------CCE
T ss_pred             cc--CCceEEEEc--cEEEE-----------------------eCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence            00  112222333  22211                       115677888888887654               2 67


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEcCC-c-EEEEeCCCCeEEeeec-C-CcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASASPD-N-IKQWKCPEGKFIQNLP-G-HNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s~d-~-i~~w~~~~~~~~~~~~-~-h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      .+.+|...|++++|+|++.+|++++.| . |++||..+++.+..+. + |...|.+++|+|++ +|++++.|++|++||+
T Consensus       190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~  269 (355)
T 3vu4_A          190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEI  269 (355)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred             EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence            889999999999999999999999887 5 9999999999999998 6 99999999999998 8999999999999999


Q ss_pred             CCCe
Q psy8895         442 RTGY  445 (479)
Q Consensus       442 ~~~~  445 (479)
                      +++.
T Consensus       270 ~~~~  273 (355)
T 3vu4_A          270 FNDQ  273 (355)
T ss_dssp             SCCS
T ss_pred             cCCC
Confidence            8653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.9e-29  Score=244.15  Aligned_cols=254  Identities=21%  Similarity=0.288  Sum_probs=197.5

Q ss_pred             eeecCCcccceEEEEEcc-CCceEEEecCCCeEEEEeeccc-------ceEeeecccccceEEEEecCCCCccccceEEe
Q psy8895          26 IRHYHGHLSSVNTISLHP-TIDVLITAGRDSTARVWDVRTK-------ANVYTLTGHTNTIASVVTQASEPQVGTKTVLL   97 (479)
Q Consensus        26 ~~~~~gH~~~V~~l~~sp-~g~~laSgs~D~~vriWd~~t~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~   97 (479)
                      +..+.+|.++|.+++|+| ++++||||+.|++|+|||+.++       +.+..+.+|...|.++.|.++...    .++ 
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~----~l~-  148 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN----VLL-  148 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT----EEE-
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC----EEE-
Confidence            345779999999999999 8999999999999999999988       567889999999999999765321    111 


Q ss_pred             ccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceecccccccccccc
Q psy8895          98 ESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN  177 (479)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (479)
                                           +...++.+++|++...                                           
T Consensus       149 ---------------------s~~~dg~i~iwd~~~~-------------------------------------------  164 (402)
T 2aq5_A          149 ---------------------SAGCDNVILVWDVGTG-------------------------------------------  164 (402)
T ss_dssp             ---------------------EEETTSCEEEEETTTT-------------------------------------------
T ss_pred             ---------------------EEcCCCEEEEEECCCC-------------------------------------------
Confidence                                 1224466777765311                                           


Q ss_pred             ccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEe--cCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE
Q psy8895         178 QLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVI--SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL  255 (479)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~  255 (479)
                                                      +....+  .+|.+.|.+++|+|++++|++++.|+.|++||+++++.+.
T Consensus       165 --------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  212 (402)
T 2aq5_A          165 --------------------------------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA  212 (402)
T ss_dssp             --------------------------------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE
T ss_pred             --------------------------------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee
Confidence                                            011233  5688999999999999999999999999999999999988


Q ss_pred             EE-ecCCcC-EEEEEEcCCCCEEEEE---ECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895         256 SL-TGHVGS-VRGLTVSPRHPYLFSC---GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK  330 (479)
Q Consensus       256 ~~-~~h~~~-v~~v~~~~~~~~l~s~---~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  330 (479)
                      .+ .+|.+. +.+++|+|++.+++++   +.|+.|++||++............+...+.++.|+|++..++         
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---------  283 (402)
T 2aq5_A          213 EKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVY---------  283 (402)
T ss_dssp             EEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEE---------
T ss_pred             eeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEE---------
Confidence            88 788876 8999999999999988   799999999998765432222234556788999999887664         


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee-EEEEcc--CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE
Q psy8895         331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS-LCTLTN--HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF  405 (479)
Q Consensus       331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~-~~~~~~--h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~  405 (479)
                                     ++|+.|+.|++||+.++++ +..+..  |...|++++|+|++.++++ +++.+++|++.+++.
T Consensus       284 ---------------~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          284 ---------------LCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC  345 (402)
T ss_dssp             ---------------EEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred             ---------------EEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence                           3455677888888887763 444443  5689999999999988764 344699999877654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.3e-28  Score=236.83  Aligned_cols=207  Identities=17%  Similarity=0.304  Sum_probs=172.4

Q ss_pred             ecCCCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCC-------ceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcE
Q psy8895         215 ISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATG-------KLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTV  285 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i  285 (479)
                      +.+|.+.|.+++|+| ++++|++|+.|+.|++||+.++       +....+.+|...|.+++|+|++ .++++++.|+.|
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i  156 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI  156 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCE
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEE
Confidence            357899999999999 9999999999999999999987       5678899999999999999998 699999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      ++||+++.+.........+...+.++.|+|++..                         +++++.|+.|++||+++++.+
T Consensus       157 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------l~~~~~d~~i~iwd~~~~~~~  211 (402)
T 2aq5_A          157 LVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-------------------------ICTSCRDKRVRVIEPRKGTVV  211 (402)
T ss_dssp             EEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC-------------------------EEEEETTSEEEEEETTTTEEE
T ss_pred             EEEECCCCCccEEEecCCCCCceEEEEECCCCCE-------------------------EEEEecCCcEEEEeCCCCcee
Confidence            9999987765433211345678999999987665                         456677888899999999998


Q ss_pred             EEE-ccCCCc-eEEEEEeCCCcEEEEE---cCC-cEEEEeCCCCeE-Eeee-cCCcceEEEEEEcCCC-EEE-EEeCCCc
Q psy8895         366 CTL-TNHKKS-VRSVALHPTLYMFASA---SPD-NIKQWKCPEGKF-IQNL-PGHNAIINSICVNNEG-VLV-SGADNGT  435 (479)
Q Consensus       366 ~~~-~~h~~~-v~~i~~~~~~~~l~s~---s~d-~i~~w~~~~~~~-~~~~-~~h~~~v~~l~~~~~~-~l~-sg~~dg~  435 (479)
                      ..+ ..|.+. +.++.|+|++.+++++   +.+ .+++||..+++. .... ..|...+.+++++|++ .|+ +|+.||.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          212 AEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe
Confidence            888 688776 8999999999999998   555 599999987654 2222 3567789999999998 664 6668999


Q ss_pred             EEEEecCCCeE
Q psy8895         436 MCFWDWRTGYN  446 (479)
Q Consensus       436 i~lWd~~~~~~  446 (479)
                      |++||+.+++.
T Consensus       292 i~i~d~~~~~~  302 (402)
T 2aq5_A          292 IRYFEITSEAP  302 (402)
T ss_dssp             EEEEEECSSTT
T ss_pred             EEEEEecCCCc
Confidence            99999998874

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.2e-27  Score=230.42  Aligned_cols=240  Identities=20%  Similarity=0.263  Sum_probs=194.9

Q ss_pred             ceeEEEecCCCccEEEEEEcCC---CcEEEEEeCCCeEEEEECCC-CceE-EEEecCCcCEEEEEEcCCCCEEEEEECCC
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPG---NEWFATGSADKIIKVWDLAT-GKLK-LSLTGHVGSVRGLTVSPRHPYLFSCGDDR  283 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~-~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d~  283 (479)
                      .+....+.+|.+.|.+++|+|+   |++|++|+.|+.|++||+.+ +... ..+.+|...|.+++|+|++.+|++++.|+
T Consensus        29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg  108 (368)
T 3mmy_A           29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK  108 (368)
T ss_dssp             TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence            4455678899999999999999   69999999999999999987 5554 68889999999999999999999999999


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCeEEEEE--eCCCCEEEEEeCCCeEEEEeCCCCCCC--------------CCCeEEE
Q psy8895         284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTF--DNSGSRLITTEADKTVKLYKEDDSATE--------------ESHPVIT  347 (479)
Q Consensus       284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~~~~~~~~~~--------------~~~~l~s  347 (479)
                      .|++||++..+....   ..+...+.++.|  ++++..+++++.|+.|++|+.......              ....+++
T Consensus       109 ~v~iwd~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (368)
T 3mmy_A          109 TAKMWDLSSNQAIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVV  185 (368)
T ss_dssp             EEEEEETTTTEEEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEE
T ss_pred             cEEEEEcCCCCceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEE
Confidence            999999987664432   346678999999  889999999999999999998764321              1345788


Q ss_pred             EeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCc----EEEEEcCC-cEEEEeCCCC---eEEeeecCCcc---
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLY----MFASASPD-NIKQWKCPEG---KFIQNLPGHNA---  414 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~----~l~s~s~d-~i~~w~~~~~---~~~~~~~~h~~---  414 (479)
                      ++.|+.+++||++.........  .+...+..+++.++..    .+++++.+ .+++|+....   +....+.+|..   
T Consensus       186 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          186 ATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             EEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             EeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc
Confidence            9999999999998765433321  2344556666655443    26666666 5999999887   55677778876   


Q ss_pred             ---------eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         415 ---------IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       415 ---------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                               .|.+++++|++ +|++|+.||.|++||+++++.++.++
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence                     69999999998 99999999999999999998876653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-28  Score=236.54  Aligned_cols=208  Identities=22%  Similarity=0.306  Sum_probs=172.0

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC--CCceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCW  288 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~--~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~w  288 (479)
                      .++.+|.+.|.+++|+|++++|++|+.|+.|++||+.  +++....+.+|...|.+++|+++  +.+|++++.|+.|++|
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw   84 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   84 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence            4578999999999999999999999999999999998  55677789999999999999987  8999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe--e
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK--S  364 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~--~  364 (479)
                      |++..+.........+...+.++.|+|+  +..+                         ++++.|+.|++||++...  .
T Consensus        85 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-------------------------~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           85 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-------------------------LVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-------------------------EEEETTSEEEEEECCTTSCCC
T ss_pred             EcCCCceeEeeeecCCCcceEEEEeCCCCCCCEE-------------------------EEecCCCcEEEEecCCCCcee
Confidence            9987642111112335678999999987  5554                         455666667777776652  3


Q ss_pred             EEEEccCCCceEEEEEeC-------------CCcEEEEEcCC-cEEEEeCCCCe----EEeeecCCcceEEEEEEcCC--
Q psy8895         365 LCTLTNHKKSVRSVALHP-------------TLYMFASASPD-NIKQWKCPEGK----FIQNLPGHNAIINSICVNNE--  424 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~-------------~~~~l~s~s~d-~i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~--  424 (479)
                      ...+..|...|++++|+|             ++.++++++.| .|++||+.+++    ....+.+|...|.+++++|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            445678999999999999             68888888877 59999987653    45678899999999999998  


Q ss_pred             -C-EEEEEeCCCcEEEEecCCCe
Q psy8895         425 -G-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       425 -~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                       + +|++++.||.|++||++++.
T Consensus       220 ~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          220 LRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             SSEEEEEEETTSCEEEEEESSTT
T ss_pred             CCCeEEEEeCCCEEEEEeCCCCC
Confidence             7 89999999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-28  Score=235.03  Aligned_cols=185  Identities=9%  Similarity=0.108  Sum_probs=144.8

Q ss_pred             EEEEeCCCeEEEEECC---------CCceEEEEe-cCCcCEEEEEEcC--CCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         234 FATGSADKIIKVWDLA---------TGKLKLSLT-GHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       234 l~sgs~d~~i~iWd~~---------~~~~~~~~~-~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      +++++.|++|++|+..         +++.+..+. +|...|.+++|+|  ++.++++++.|++|++||+++.+..... .
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~  166 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVH-S  166 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEE-C
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEE-e
Confidence            7788888888888554         555454444 6778999999999  9999999999999999999876653221 1


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE-EEEcc-CCCceEEEE
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL-CTLTN-HKKSVRSVA  379 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~-~~~~~-h~~~v~~i~  379 (479)
                      ..+...+.+++|+|++..+                         ++|+.|++|++||+++++.+ ..+.. |...|++++
T Consensus       167 ~~~~~~i~~~~~~pdg~~l-------------------------asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~  221 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDSLLL-------------------------ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVK  221 (343)
T ss_dssp             CCSSCCCCEEEECTTSCEE-------------------------EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEE
T ss_pred             cCCCCceEEEEECCCCCEE-------------------------EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEE
Confidence            2234468899999987654                         56677788888888888877 77887 999999999


Q ss_pred             EeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC---CcceEE--EEEEcCCC-EEEEEeC-CCcEEEEecCCC
Q psy8895         380 LHPTLYMFASASPDNIKQWKCPEGKFIQNLPG---HNAIIN--SICVNNEG-VLVSGAD-NGTMCFWDWRTG  444 (479)
Q Consensus       380 ~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~---h~~~v~--~l~~~~~~-~l~sg~~-dg~i~lWd~~~~  444 (479)
                      |+|++.+|++++++.|++||+.+++....+..   |...+.  +++|+|++ +|++++. |+.|++|++.++
T Consensus       222 fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          222 FADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             ECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             EeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence            99999999999988999999998877655543   444444  69999999 8899888 999999999755

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=8.7e-27  Score=230.66  Aligned_cols=220  Identities=25%  Similarity=0.453  Sum_probs=190.4

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      ..+|...|.|+++  +++++++|+.|+.|++||+.+++....+.+|...|.++++  ++.++++|+.||.|++||+++++
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            3467788999887  7899999999999999999999999999999999999998  67799999999999999998776


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC------------------CCCeEEEEeCCCcEEE
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE------------------ESHPVITGSHDCTIRL  356 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------------~~~~l~sgs~d~~v~i  356 (479)
                      .....  ..+...+.++.|++  ..+++++.|+.|++|+.......                  +...+++|+.|++|++
T Consensus       205 ~~~~~--~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~v  280 (435)
T 1p22_A          205 MLNTL--IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKV  280 (435)
T ss_dssp             EEEEE--CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred             EEEEE--cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEE
Confidence            54332  24567899999864  59999999999999998654321                  2457899999999999


Q ss_pred             EECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCc
Q psy8895         357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGT  435 (479)
Q Consensus       357 wd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~  435 (479)
                      ||+++++.+.++.+|...|.+++++  +.++++++.| .|++||..+++.+..+.+|...|.++++ .+.+|++|+.||.
T Consensus       281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~-~~~~l~sg~~dg~  357 (435)
T 1p22_A          281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF-DNKRIVSGAYDGK  357 (435)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSC
T ss_pred             EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe-cCCEEEEEeCCCc
Confidence            9999999999999999999999995  4567777666 5999999999999999999999999998 3449999999999


Q ss_pred             EEEEecCCCe
Q psy8895         436 MCFWDWRTGY  445 (479)
Q Consensus       436 i~lWd~~~~~  445 (479)
                      |++||++++.
T Consensus       358 i~vwd~~~~~  367 (435)
T 1p22_A          358 IKVWDLVAAL  367 (435)
T ss_dssp             EEEEEHHHHT
T ss_pred             EEEEECCCCC
Confidence            9999998765

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=8.4e-26  Score=220.06  Aligned_cols=203  Identities=16%  Similarity=0.148  Sum_probs=162.1

Q ss_pred             cEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcccC
Q psy8895         221 WVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      .+.+++|+|++++|+ +++.++.|++||+.+++.+..+..| ..+.+++|+|+++.+ ++++.|+.|++||+++.+....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            567889999999775 5556799999999999988877755 468999999999977 6788899999999987654332


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV  378 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i  378 (479)
                      .   .....+..+.|+|+++.++                        ++++.|++|++||+++++.+..+. +...+.++
T Consensus       154 ~---~~~~~~~~~~~~~dg~~l~------------------------~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~  205 (391)
T 1l0q_A          154 V---SVGRSPKGIAVTPDGTKVY------------------------VANFDSMSISVIDTVTNSVIDTVK-VEAAPSGI  205 (391)
T ss_dssp             E---ECCSSEEEEEECTTSSEEE------------------------EEETTTTEEEEEETTTTEEEEEEE-CSSEEEEE
T ss_pred             E---ecCCCcceEEECCCCCEEE------------------------EEeCCCCEEEEEECCCCeEEEEEe-cCCCccce
Confidence            1   1234567888888876553                        455667889999999888877775 45678999


Q ss_pred             EEeCCCcEEEEEc----CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         379 ALHPTLYMFASAS----PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       379 ~~~~~~~~l~s~s----~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      +|+|++..+++++    ++.+.+||..+++.+..+..|.. +.+++++|++ .| ++++.|+.|++||+++++.++.+.+
T Consensus       206 ~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          206 AVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAV  284 (391)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEEC
Confidence            9999998777665    34699999999999888887764 6889999998 55 7888999999999999998887754


Q ss_pred             e
Q psy8895         453 R  453 (479)
Q Consensus       453 ~  453 (479)
                      .
T Consensus       285 ~  285 (391)
T 1l0q_A          285 G  285 (391)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=3.9e-26  Score=225.57  Aligned_cols=221  Identities=13%  Similarity=0.130  Sum_probs=183.7

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~  295 (479)
                      +|.+.|.+++|+++++++++++.|+.|++||+++++....+..|...+.+++|+|+++.++. ++.|+.|++||+++.+.
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            57778999999999999999999999999999999999999999999999999999998855 45799999999987654


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEe--------CCCeEEEEeCCCCCC----------------CCC-CeEEEEeC
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTE--------ADKTVKLYKEDDSAT----------------EES-HPVITGSH  350 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~~~~~~~~~~----------------~~~-~~l~sgs~  350 (479)
                      ....   .....+.++.|+|+++.+++++        .|+.|++|+......                ++. ..+++++.
T Consensus       247 ~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          247 IRKT---DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             EEEC---CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT
T ss_pred             EEEe---cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC
Confidence            3322   2234588999999999998887        588999999865321                223 35577789


Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC----------------cEEEEeCCCCeEEeeecCCcc
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD----------------NIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d----------------~i~~w~~~~~~~~~~~~~h~~  414 (479)
                      |+.|++||+.+++.+..+. +...+.+++|+|++..+++++.+                .+.+||..+++.+..+..+ .
T Consensus       324 ~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~  401 (433)
T 3bws_A          324 CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-N  401 (433)
T ss_dssp             TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-S
T ss_pred             CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-C
Confidence            9999999999998888775 67789999999999877666542                6999999999998888764 4


Q ss_pred             eEEEEEEcCCC-EEEEEe-CCCcEEEEecC
Q psy8895         415 IINSICVNNEG-VLVSGA-DNGTMCFWDWR  442 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~-~dg~i~lWd~~  442 (479)
                      .+.+++++|++ +|++++ .|+.|++|+++
T Consensus       402 ~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          402 QPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            68999999998 777666 59999999976

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.96  E-value=5.3e-26  Score=223.97  Aligned_cols=206  Identities=21%  Similarity=0.363  Sum_probs=161.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      +|...|++++|+|+|++|++|+.|++|+|||+.+++.+..+.+|...+.+++++  +..+++|+.|+.+++||.......
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence            466789999999999999999999999999999999999999999999988875  568999999999999998754432


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe----eEEEEccCC
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK----SLCTLTNHK  372 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~----~~~~~~~h~  372 (479)
                      ... ...+...+..+.+.+++..++++                         +.|+.+++||...++    .+.....|.
T Consensus       223 ~~~-~~~h~~~~~~~~~~~~g~~l~s~-------------------------~~D~~v~i~~~~~~~~~~~~~~~~~~~~  276 (420)
T 4gga_A          223 VAT-LSGHSQEVCGLRWAPDGRHLASG-------------------------GNDNLVNVWPSAPGEGGWVPLQTFTQHQ  276 (420)
T ss_dssp             EEE-EECCSSCEEEEEECTTSSEEEEE-------------------------ETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred             eEE-ecccccceeeeeecCCCCeeeee-------------------------eccccceEEeeccccccceeeeeecccC
Confidence            211 12345667888888877766554                         455555666655443    345667899


Q ss_pred             CceEEEEEeCCC-cEEEE--EcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe--CCCcEEEEecCCCe
Q psy8895         373 KSVRSVALHPTL-YMFAS--ASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA--DNGTMCFWDWRTGY  445 (479)
Q Consensus       373 ~~v~~i~~~~~~-~~l~s--~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~--~dg~i~lWd~~~~~  445 (479)
                      ..|.+++|+|.. .++++  ++.| .|++||..++++...+..|. .+.++.+++++ .+++++  .|+.|+|||+.+++
T Consensus       277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~  355 (420)
T 4gga_A          277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA  355 (420)
T ss_dssp             SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC
T ss_pred             CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc
Confidence            999999999964 55554  3455 59999999999998887765 46667777776 666544  79999999999999


Q ss_pred             EEEEEE
Q psy8895         446 NFQRLQ  451 (479)
Q Consensus       446 ~~~~~~  451 (479)
                      ++..++
T Consensus       356 ~v~~l~  361 (420)
T 4gga_A          356 KVAELK  361 (420)
T ss_dssp             EEEEEC
T ss_pred             EEEEEc
Confidence            888764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=5.3e-27  Score=223.68  Aligned_cols=219  Identities=23%  Similarity=0.311  Sum_probs=167.0

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcC--CCCEEEEEECCCcEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKC  287 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~--~~~~l~s~~~d~~i~~  287 (479)
                      .+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++    +....+.+|...|.+++|+|  ++.+|++++.|+.|++
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            56899999999999999999999999999999999876    45667889999999999999  6899999999999999


Q ss_pred             EECCCCCccc-------CCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEE
Q psy8895         288 WDLEYNKAPV-------QPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       288 wd~~~~~~~~-------~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd  358 (479)
                      ||++......       ......+...+.++.|+|+  +..+++++.|+.|++|+...........+-..     +..  
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~--  158 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE-----MKV--  158 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE-----EES--
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc-----ccc--
Confidence            9998653211       0111245677999999988  77777666666666666544322111100000     000  


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCeE--EeeecCCcceEEEEEEcCCC-----EE
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGKF--IQNLPGHNAIINSICVNNEG-----VL  427 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~-----~l  427 (479)
                           .......|...+.+++|+|+   +.++++++.+. +.+|+...++.  ...+.+|...|.+++++|++     +|
T Consensus       159 -----~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l  233 (351)
T 3f3f_A          159 -----LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLI  233 (351)
T ss_dssp             -----CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEE
T ss_pred             -----cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEE
Confidence                 00011257788999999997   88888888876 66677666654  67788999999999999995     79


Q ss_pred             EEEeCCCcEEEEecCCC
Q psy8895         428 VSGADNGTMCFWDWRTG  444 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~  444 (479)
                      ++|+.||.|++||++++
T Consensus       234 ~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          234 ATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEETTSCEEEEEEEEC
T ss_pred             EEEcCCCeEEEEeCCCC
Confidence            99999999999999876

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.1e-28  Score=235.59  Aligned_cols=176  Identities=11%  Similarity=-0.013  Sum_probs=118.6

Q ss_pred             CCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEE-------------------------EecCCcCEEEEEEc-
Q psy8895         218 HLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLS-------------------------LTGHVGSVRGLTVS-  270 (479)
Q Consensus       218 h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~-------------------------~~~h~~~v~~v~~~-  270 (479)
                      |...|.+++|+|++. +|++|+.|++|++||+++++....                         ..+|...+.++.|+ 
T Consensus       185 ~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~  264 (393)
T 4gq1_A          185 LSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG  264 (393)
T ss_dssp             CSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred             CCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence            556788999999874 799999999999999988754322                         24577788899886 


Q ss_pred             CCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895         271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSH  350 (479)
Q Consensus       271 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~  350 (479)
                      +++..+++++.|+++++||+...+.....  ..+...+..+.+.++...............+     .......+++|+.
T Consensus       265 ~dg~~l~s~s~d~~i~vwd~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~sgs~  337 (393)
T 4gq1_A          265 SDGSGILAMCKSGAWLRWNLFANNDYNEI--SDSTMKLGPKNLLPNVQGISLFPSLLGACPH-----PRYMDYFATAHSQ  337 (393)
T ss_dssp             TTTCEEEEECTTSEEEEEEC---------------------CCSCSEEEECSSCCSSCCEEC-----SSCTTEEEEEETT
T ss_pred             CCCCEEEEEeCCCCEEEEECccCCCCceE--eeecCccccEEEccccccccccCcceeEEEc-----cCCCCEEEEEECC
Confidence            79999999999999999999765433221  1222334444444443322111111111111     0122345778899


Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeC
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKC  400 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~  400 (479)
                      |++|++||+.+++.+..+.+|..+|++++|+|++++||+++++.+.+|.+
T Consensus       338 Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL  387 (393)
T 4gq1_A          338 HGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRL  387 (393)
T ss_dssp             TTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            99999999999998888888999999999999999999999999888764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.96  E-value=4.1e-27  Score=227.31  Aligned_cols=160  Identities=19%  Similarity=0.156  Sum_probs=127.2

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE--EEecCCcCEEEEEEcCCCCEEEEEECCC----cEEEEECC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFSCGDDR----TVKCWDLE  291 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~~d~----~i~~wd~~  291 (479)
                      |.+.|.+++|+|+|+++++++.| .+++|+..+++...  ...+|...|.+++|+|++.++++++.|+    .+++||+.
T Consensus       175 ~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~  253 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK  253 (365)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred             CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence            34457789999999999999865 56677777776543  3456888999999999999999998887    68889876


Q ss_pred             CCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-
Q psy8895         292 YNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-  368 (479)
Q Consensus       292 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-  368 (479)
                      .......  .....+...|.+++|+|+++++                         ++|+.|++|+|||+++++++.++ 
T Consensus       254 ~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~l-------------------------asgs~D~~V~iwd~~~~~~~~~~~  308 (365)
T 4h5i_A          254 SGNTSVLRSKQVTNRFKGITSMDVDMKGELA-------------------------VLASNDNSIALVKLKDLSMSKIFK  308 (365)
T ss_dssp             TTEEEEEEEEEEESSCSCEEEEEECTTSCEE-------------------------EEEETTSCEEEEETTTTEEEEEET
T ss_pred             cceecceeeeeecCCCCCeEeEEECCCCCce-------------------------EEEcCCCEEEEEECCCCcEEEEec
Confidence            5432211  1112355679999999987764                         56777888999999999999886 


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCC
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEG  403 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~  403 (479)
                      ++|...|++++|+||+.+|++++.|+ |++|++++.
T Consensus       309 ~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          309 QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            68999999999999999999999885 999998643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.2e-26  Score=222.16  Aligned_cols=197  Identities=10%  Similarity=0.050  Sum_probs=146.3

Q ss_pred             cCCCccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         216 SGHLGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       216 ~~h~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+|.+.|.+++|+|  +++++++++.|++|++||+++++....... |...|.+++|+|++.++++|+.|+.|++||+++
T Consensus       122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~  201 (343)
T 3lrv_A          122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS  201 (343)
T ss_dssp             CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred             cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            36778999999999  999999999999999999999988766644 455899999999999999999999999999988


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--  370 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--  370 (479)
                      .+.........+...|.++.|+|++..+++                         ++ |++|++||+++++.+.++..  
T Consensus       202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s-------------------------~~-~~~v~iwd~~~~~~~~~~~~~~  255 (343)
T 3lrv_A          202 PDQASSRFPVDEEAKIKEVKFADNGYWMVV-------------------------EC-DQTVVCFDLRKDVGTLAYPTYT  255 (343)
T ss_dssp             TTSCCEECCCCTTSCEEEEEECTTSSEEEE-------------------------EE-SSBEEEEETTSSTTCBSSCCCB
T ss_pred             CCCCccEEeccCCCCEEEEEEeCCCCEEEE-------------------------Ee-CCeEEEEEcCCCCcceeecccc
Confidence            765411112236788999999998877654                         44 33677777776655444332  


Q ss_pred             -CCCce--EEEEEeCCCcEEEEEcC-C-cEEEEeCCCCeEEeeecCCcceEEEEEEcC---CC-EEEEEeCCCcEEEEec
Q psy8895         371 -HKKSV--RSVALHPTLYMFASASP-D-NIKQWKCPEGKFIQNLPGHNAIINSICVNN---EG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       371 -h~~~v--~~i~~~~~~~~l~s~s~-d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~---~~-~l~sg~~dg~i~lWd~  441 (479)
                       |...+  .+++|+|++.+|++++. + .+++|+..+.......    ..+..+++.+   +. .+++++.||.+.++-.
T Consensus       256 ~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  331 (343)
T 3lrv_A          256 IPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILK  331 (343)
T ss_dssp             C-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEE
T ss_pred             cccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEe
Confidence             33344  36999999999998765 4 5999998655432222    4566777776   65 7899999999998864


Q ss_pred             C
Q psy8895         442 R  442 (479)
Q Consensus       442 ~  442 (479)
                      .
T Consensus       332 ~  332 (343)
T 3lrv_A          332 T  332 (343)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-26  Score=226.83  Aligned_cols=279  Identities=10%  Similarity=0.058  Sum_probs=193.6

Q ss_pred             CceEEEeecccceeEeeEEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCC
Q psy8895           7 GKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQAS   86 (479)
Q Consensus         7 ~~~~~~~~g~~~~v~~~~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~   86 (479)
                      |+++.+ .+.+..|+.......+.||...|.+++|+|+|       .|+++++|+.+.. .+.++ .|.+.|.+++|+++
T Consensus        27 G~~iAS-as~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~-~~~~~-~~~~~V~~vawSPd   96 (588)
T 2j04_A           27 GTLYLT-TFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-------FENKLDFELAQQN-GLLNS-QPVCYPRVCKPSPI   96 (588)
T ss_dssp             SCEEEE-CSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-CSSTT-SCSCCEEEEEECSS
T ss_pred             CCEEEE-EcCCceeecccccceecCCCccEEEEEECCCC-------CcceEEEEeCCCc-eEeec-CCCCcEEEEEECCC
Confidence            444432 34555555555556668999999999999998       5666666654322 23333 46888999999887


Q ss_pred             CCccccceEEeccccEEEEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceec
Q psy8895          87 EPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFI  166 (479)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (479)
                      +...                           .....+|++++|+...                                 
T Consensus        97 G~~L---------------------------As~s~dg~V~iwd~~~---------------------------------  116 (588)
T 2j04_A           97 DDWM---------------------------AVLSNNGNVSVFKDNK---------------------------------  116 (588)
T ss_dssp             SSCE---------------------------EEEETTSCEEEEETTE---------------------------------
T ss_pred             CCEE---------------------------EEEeCCCcEEEEeCCc---------------------------------
Confidence            5431                           1223456777776321                                 


Q ss_pred             cccccccccccccccCCCCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCC-----ccEEEEEEcCCCcEEEEEeCCC
Q psy8895         167 SCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHL-----GWVRCVAVEPGNEWFATGSADK  241 (479)
Q Consensus       167 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~g~~l~sgs~d~  241 (479)
                                                                  ....+. |.     ..|.+++|+|||++|++|+.||
T Consensus       117 --------------------------------------------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A          117 --------------------------------------------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             --------------------------------------------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred             --------------------------------------------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence                                                        000111 22     3588999999999999999999


Q ss_pred             eEEEEECCCCce-------EEEE----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc--CCCCCCCCCCe
Q psy8895         242 IIKVWDLATGKL-------KLSL----TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV--QPGSMDSESGI  308 (479)
Q Consensus       242 ~i~iWd~~~~~~-------~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~i  308 (479)
                      +|+|||+.++..       +.++    .+|...|.+++|+|+|  +++++.|+++++||+.......  ......+...|
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V  229 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI  229 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence            999999998853       5666    6788899999999999  8889999999999997655321  00001344678


Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE--eCCCcE
Q psy8895         309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL--HPTLYM  386 (479)
Q Consensus       309 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~--~~~~~~  386 (479)
                      .+++|+  ++.+                         ++++ +++|++||+..++......+|...|..++|  +|++..
T Consensus       230 ~svaFs--g~~L-------------------------ASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~  281 (588)
T 2j04_A          230 TDLKIV--DYKV-------------------------VLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTI  281 (588)
T ss_dssp             CCEEEE--TTEE-------------------------EEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEE
T ss_pred             EEEEEE--CCEE-------------------------EEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCE
Confidence            888887  3444                         4444 578889998877764444489999999999  999999


Q ss_pred             EEEEcCCcEEEEeCCC------C-----------------eEEeeecCCcceEEEEEEcCCC-EEEEEe
Q psy8895         387 FASASPDNIKQWKCPE------G-----------------KFIQNLPGHNAIINSICVNNEG-VLVSGA  431 (479)
Q Consensus       387 l~s~s~d~i~~w~~~~------~-----------------~~~~~~~~h~~~v~~l~~~~~~-~l~sg~  431 (479)
                      ++++..++.++|..+.      +                 .....+.+ ...|.+++++||| .+|+++
T Consensus       282 La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          282 LLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             EEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             EEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEEEE
Confidence            9999976558887631      1                 11112222 4468899999999 777776

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1e-26  Score=245.60  Aligned_cols=207  Identities=22%  Similarity=0.310  Sum_probs=169.1

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECC--CCceEEEEecCCcCEEEEEEcCC--CCEEEEEECCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLA--TGKLKLSLTGHVGSVRGLTVSPR--HPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~--~~~~~~~~~~h~~~v~~v~~~~~--~~~l~s~~~d~~i~~wd  289 (479)
                      ++.+|.+.|.+++|+|++++|++|+.||.|++||+.  +++....+.+|.+.|.+++|+|+  +.++++|+.||.|++||
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd   83 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK   83 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence            567999999999999999999999999999999998  45677789999999999999988  89999999999999999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC--eeE
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNS--GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG--KSL  365 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~--~~~  365 (479)
                      +++++.........+...|.++.|+|+  +..+                         ++|+.|++|++||++.+  ...
T Consensus        84 ~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l-------------------------~sgs~dg~I~vwdl~~~~~~~~  138 (753)
T 3jro_A           84 EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLL-------------------------LVASSDGKVSVVEFKENGTTSP  138 (753)
T ss_dssp             EETTEEEEEEEECCCSSCEEEEEECCGGGCSEE-------------------------EEEETTSEEEEEECCSSSCCCC
T ss_pred             CCCCcccccccccCCCCCeEEEEECCCCCCCEE-------------------------EEEeCCCcEEEEEeecCCCcce
Confidence            987642111112346678999999987  5555                         45566666777777655  234


Q ss_pred             EEEccCCCceEEEEEeC-------------CCcEEEEEcCC-cEEEEeCCCC----eEEeeecCCcceEEEEEEcCC---
Q psy8895         366 CTLTNHKKSVRSVALHP-------------TLYMFASASPD-NIKQWKCPEG----KFIQNLPGHNAIINSICVNNE---  424 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~-------------~~~~l~s~s~d-~i~~w~~~~~----~~~~~~~~h~~~v~~l~~~~~---  424 (479)
                      ..+.+|...|.+++|+|             ++.++++++.| .|++||..++    .....+.+|...|.+++++|+   
T Consensus       139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~  218 (753)
T 3jro_A          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (753)
T ss_dssp             EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence            45678999999999999             47778888766 5999998776    566788999999999999999   


Q ss_pred             C-EEEEEeCCCcEEEEecCCCe
Q psy8895         425 G-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       425 ~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      + +|++|+.||+|++||+.++.
T Consensus       219 ~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          219 RSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             SEEEEEEESSSCEEEEEESSSS
T ss_pred             CCEEEEEecCCEEEEecCCCCC
Confidence            7 89999999999999999864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.6e-25  Score=220.05  Aligned_cols=229  Identities=12%  Similarity=0.113  Sum_probs=185.2

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---eEEEEec-------------------------------------
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGK---LKLSLTG-------------------------------------  259 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---~~~~~~~-------------------------------------  259 (479)
                      .++.+++|+++|++|+++ .++.|++||+.+|+   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            467899999999977666 47899999999998   5555543                                     


Q ss_pred             -----------------CCcCEEEEEEcCCCCEE-EEEECCCcEEEEECC--CCCcccCCCCCCCCCCeEEEEEeCCCCE
Q psy8895         260 -----------------HVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLE--YNKAPVQPGSMDSESGIFSMTFDNSGSR  319 (479)
Q Consensus       260 -----------------h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (479)
                                       |.+.|.+++|+|++++| ++++.|+.|++||+.  .++.........+...+.++.|+|++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT  163 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence                             33379999999999996 889999999999998  5544332211234567999999999999


Q ss_pred             EEEEeCCCeEEEEeCCCCCC---------------------CC---CCeEEEEeCCCcEEEEECCCCeeEEE-EccCCCc
Q psy8895         320 LITTEADKTVKLYKEDDSAT---------------------EE---SHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKKS  374 (479)
Q Consensus       320 l~~~~~d~~i~~~~~~~~~~---------------------~~---~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~~  374 (479)
                      +++++.++.+.+|+......                     ++   ...+++|+.|++|++||+++++.+.. +.+|...
T Consensus       164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            99999999999998643211                     23   45899999999999999999988887 5589999


Q ss_pred             eEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC-------------------------cceEEEEEEcCCC-EE
Q psy8895         375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH-------------------------NAIINSICVNNEG-VL  427 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h-------------------------~~~v~~l~~~~~~-~l  427 (479)
                      |++++|+ ++.+|++++.|. |++||+.+++.+..+..+                         ...|.+++++|++ +|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 999999998875 999999999988777532                         3568999999988 78


Q ss_pred             EEEe-CCCcEEEEec--CCC---eEEEEE
Q psy8895         428 VSGA-DNGTMCFWDW--RTG---YNFQRL  450 (479)
Q Consensus       428 ~sg~-~dg~i~lWd~--~~~---~~~~~~  450 (479)
                      ++++ .|+.|++||+  .++   ..++.+
T Consensus       323 ~~~~~~d~~i~iw~~~~~~~~~l~~~~~~  351 (450)
T 2vdu_B          323 AFFVEATKCIIILEMSEKQKGDLALKQII  351 (450)
T ss_dssp             EEEETTCSEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEECCCCeEEEEEeccCCCCceeeccEe
Confidence            8888 8999999999  666   444444

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=8.7e-26  Score=223.85  Aligned_cols=210  Identities=14%  Similarity=0.269  Sum_probs=163.5

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEEecCC------------cCEEEEEEcCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-----------LKLSLTGHV------------GSVRGLTVSPRH  273 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-----------~~~~~~~h~------------~~v~~v~~~~~~  273 (479)
                      .|.+.|.+++|+|+|++|++|+.||.|+|||+.+++           ....+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367899999999999999999999999999998876           477889998            889999999998


Q ss_pred             --CEEEEEECCCcEEEEECCCCCcccC--------------------------------------CCCCCCCCCeEEEEE
Q psy8895         274 --PYLFSCGDDRTVKCWDLEYNKAPVQ--------------------------------------PGSMDSESGIFSMTF  313 (479)
Q Consensus       274 --~~l~s~~~d~~i~~wd~~~~~~~~~--------------------------------------~~~~~~~~~i~~~~~  313 (479)
                        ..+++++.|+.|++||+........                                      .....+...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              7899999999999999865322100                                      001234455666666


Q ss_pred             eCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEE-------EEccCCCceEEEEEeCCC-
Q psy8895         314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLC-------TLTNHKKSVRSVALHPTL-  384 (479)
Q Consensus       314 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~-------~~~~h~~~v~~i~~~~~~-  384 (479)
                      +|++..+                         ++| .|++|++||++. ++.+.       .+.+|...|++++|+|++ 
T Consensus       186 ~~~~~~l-------------------------~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~  239 (447)
T 3dw8_B          186 NSDYETY-------------------------LSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC  239 (447)
T ss_dssp             CTTSSEE-------------------------EEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT
T ss_pred             cCCCCEE-------------------------EEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC
Confidence            6665554                         444 466666777663 33333       356799999999999998 


Q ss_pred             cEEEEEcCCc-EEEEeCCCCeE----EeeecCCcc------------eEEEEEEcCCC-EEEEEeCCCcEEEEecCC-Ce
Q psy8895         385 YMFASASPDN-IKQWKCPEGKF----IQNLPGHNA------------IINSICVNNEG-VLVSGADNGTMCFWDWRT-GY  445 (479)
Q Consensus       385 ~~l~s~s~d~-i~~w~~~~~~~----~~~~~~h~~------------~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~-~~  445 (479)
                      .+|++++.|. |++||+.+++.    ...+.+|..            .|.+++|+|++ +|++++. +.|++||+++ +.
T Consensus       240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~  318 (447)
T 3dw8_B          240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENR  318 (447)
T ss_dssp             TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSS
T ss_pred             cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcc
Confidence            8898888775 99999998886    678888876            89999999999 8888888 9999999997 77


Q ss_pred             EEEEEEEe
Q psy8895         446 NFQRLQVR  453 (479)
Q Consensus       446 ~~~~~~~~  453 (479)
                      ++..++..
T Consensus       319 ~~~~~~~~  326 (447)
T 3dw8_B          319 PVETYQVH  326 (447)
T ss_dssp             CSCCEESC
T ss_pred             ccceeecc
Confidence            77666543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.93  E-value=1.1e-23  Score=213.45  Aligned_cols=310  Identities=14%  Similarity=0.045  Sum_probs=226.4

Q ss_pred             EEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEeecccCceeeeccc
Q psy8895          40 SLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPS  119 (479)
Q Consensus        40 ~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (479)
                      +|+|++.++++++.|++|++||..+++.+.++..+.. +..+.|+++...              +++.+           
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~--------------l~v~~-----------  197 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRY--------------LLVIG-----------  197 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCE--------------EEEEE-----------
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCE--------------EEEEC-----------
Confidence            4899999999999999999999999999999983333 667777665432              11111           


Q ss_pred             ccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHHHHhHhcCC
Q psy8895         120 LLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALP  199 (479)
Q Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  199 (479)
                        .++++.+|+....                                                                 
T Consensus       198 --~d~~V~v~D~~~~-----------------------------------------------------------------  210 (543)
T 1nir_A          198 --RDARIDMIDLWAK-----------------------------------------------------------------  210 (543)
T ss_dssp             --TTSEEEEEETTSS-----------------------------------------------------------------
T ss_pred             --CCCeEEEEECcCC-----------------------------------------------------------------
Confidence              1144555543100                                                                 


Q ss_pred             CCCCCCCCcceeEEEecCCCccEEEEEEcC----CCcEEEEEeC-CCeEEEEECCCCceEEEEecC----------C-cC
Q psy8895         200 MPKPQWHAPWKLYRVISGHLGWVRCVAVEP----GNEWFATGSA-DKIIKVWDLATGKLKLSLTGH----------V-GS  263 (479)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h----------~-~~  263 (479)
                              ..+....+. +......++|+|    +|+++++++. +++|.+||..+++++..+..+          . ..
T Consensus       211 --------t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          211 --------EPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             --------SCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             --------CCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence                    001111222 234568899999    9999998884 899999999999998887652          2 36


Q ss_pred             EEEEEEcCCCCE-EEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCC--
Q psy8895         264 VRGLTVSPRHPY-LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSAT--  339 (479)
Q Consensus       264 v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~--  339 (479)
                      +..+.++|+++. +++...++.|.+||+...+.... ........+..+.|+|+++++++++ .+++|.+||......  
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee-EEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence            889999997765 45667889999999976543220 0112234466789999999876554 688999999765321  


Q ss_pred             ------------------CC-CCeEEEEe-CCCcEEEEECCC-------CeeEEEEccCCCceEEEEEeCCCcEEEEEc-
Q psy8895         340 ------------------EE-SHPVITGS-HDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVALHPTLYMFASAS-  391 (479)
Q Consensus       340 ------------------~~-~~~l~sgs-~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s-  391 (479)
                                        ++ ...+++++ .|++|.+||+.+       .+.+.+++.|...+..++++|+++.|.+++ 
T Consensus       361 ~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~  440 (543)
T 1nir_A          361 LVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT  440 (543)
T ss_dssp             EEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCT
T ss_pred             eeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecC
Confidence                              11 23356665 689999999998       889999999988889999999999999886 


Q ss_pred             -------CCcEEEEeCCCCeEE-eee--------cCCcceEEEEEEcCCC-EEEEE-----eCCCcEEEEecCCCeEEEE
Q psy8895         392 -------PDNIKQWKCPEGKFI-QNL--------PGHNAIINSICVNNEG-VLVSG-----ADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       392 -------~d~i~~w~~~~~~~~-~~~--------~~h~~~v~~l~~~~~~-~l~sg-----~~dg~i~lWd~~~~~~~~~  449 (479)
                             ++.|.+||..+++.. ..+        ..+...+..+.|+++| .|+.+     +.|+.|.+||.+|++.+++
T Consensus       441 ~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  520 (543)
T 1nir_A          441 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV  520 (543)
T ss_dssp             TCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             CCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence                   347999999998876 443        4567789999999999 55433     2589999999999998876


Q ss_pred             EEE
Q psy8895         450 LQV  452 (479)
Q Consensus       450 ~~~  452 (479)
                      ++.
T Consensus       521 i~~  523 (543)
T 1nir_A          521 VKD  523 (543)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.93  E-value=1e-24  Score=215.48  Aligned_cols=206  Identities=20%  Similarity=0.301  Sum_probs=170.8

Q ss_pred             EecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCC----------CceEEEEecCCcCEEEEEEcCCCC-EEEEEEC
Q psy8895         214 VISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLAT----------GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGD  281 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~  281 (479)
                      ...+|.+.|.+++|+|+ +.+|++++.||.|++||+.+          ......+.+|...|.+++|+|++. +|++|+.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            44579999999999997 78999999999999999986          567788899999999999999988 9999999


Q ss_pred             CCcEEEEECCCCCccc-----CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEE
Q psy8895         282 DRTVKCWDLEYNKAPV-----QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRL  356 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~i  356 (479)
                      ||.|++||+.......     ......+...+.++.|+|.+.                        ..+++++.|+.|++
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~------------------------~~l~s~~~dg~i~i  258 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHE------------------------SLFGSVADDQKLMI  258 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCT------------------------TEEEEEETTSEEEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCC------------------------CEEEEEeCCCeEEE
Confidence            9999999998633210     111124567789999988422                        23566777788888


Q ss_pred             EECCCC---eeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCC--EEE
Q psy8895         357 WDLAAG---KSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEG--VLV  428 (479)
Q Consensus       357 wd~~~~---~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~--~l~  428 (479)
                      ||++++   +++..+..|...|++++|+|++. ++++++.| .|++||+.+ ++.+..+.+|...|.+++++|++  +|+
T Consensus       259 ~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred             EECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence            888776   56777888999999999999876 78787776 499999987 56788889999999999999987  699


Q ss_pred             EEeCCCcEEEEecCC
Q psy8895         429 SGADNGTMCFWDWRT  443 (479)
Q Consensus       429 sg~~dg~i~lWd~~~  443 (479)
                      +++.|++|++||+.+
T Consensus       339 s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EEETTSCCEEEEGGG
T ss_pred             EEeCCCcEEEEeCCC
Confidence            999999999999987

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.93  E-value=2.2e-23  Score=200.36  Aligned_cols=195  Identities=12%  Similarity=0.003  Sum_probs=143.1

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC-ceEEEEecCCcCEEEEEEcCCCCEEEE--EECCCcEEEEECCCCC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG-KLKLSLTGHVGSVRGLTVSPRHPYLFS--CGDDRTVKCWDLEYNK  294 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~-~~~~~~~~h~~~v~~v~~~~~~~~l~s--~~~d~~i~~wd~~~~~  294 (479)
                      |...|.+++++++.  ++.+ .|+.|++||+.++ +.+..+..   +...+++++  .+++.  |+.||.|++||++...
T Consensus        99 ~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~  170 (355)
T 3vu4_A           99 VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG  170 (355)
T ss_dssp             CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC--
T ss_pred             CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC
Confidence            45678999998764  3333 3789999999988 65555443   445566777  45655  5789999999998644


Q ss_pred             ccc--------------CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCc-EEEEEC
Q psy8895         295 APV--------------QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCT-IRLWDL  359 (479)
Q Consensus       295 ~~~--------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~-v~iwd~  359 (479)
                      ...              ......+...|.+++|+|++.++                         ++|+.|++ |++||+
T Consensus       171 ~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l-------------------------~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          171 SATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV-------------------------ATCSQDGTIIRVFKT  225 (355)
T ss_dssp             ----------------CCEEECCCSSCEEEEEECTTSSEE-------------------------EEEETTCSEEEEEET
T ss_pred             ccccccccccccccCcccEEEEccCCceEEEEECCCCCEE-------------------------EEEeCCCCEEEEEEC
Confidence            100              01113467789999999987664                         56777888 999999


Q ss_pred             CCCeeEEEEc-c-CCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE--EeeecC---------------------Cc
Q psy8895         360 AAGKSLCTLT-N-HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF--IQNLPG---------------------HN  413 (479)
Q Consensus       360 ~~~~~~~~~~-~-h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~--~~~~~~---------------------h~  413 (479)
                      ++++++.++. + |...|++++|+|++.+|++++.|. +++||+.++..  ...+.+                     +.
T Consensus       226 ~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (355)
T 3vu4_A          226 EDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH  305 (355)
T ss_dssp             TTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred             CCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence            9999999998 5 999999999999999999998885 99999876532  111111                     11


Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      .....+++++++ .|++++.||.+++|++..++
T Consensus       306 ~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          306 VRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            223567899998 89999999999999987654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.92  E-value=4e-22  Score=193.98  Aligned_cols=201  Identities=17%  Similarity=0.184  Sum_probs=161.1

Q ss_pred             EEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCC
Q psy8895         222 VRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       222 v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      +.+++|+|+|+++ ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++++. ++.|+.|++||+++++.....
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence            5788999999876 677799999999999999988887665 8999999999998765 456799999999876543322


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA  379 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~  379 (479)
                         .....+.++.|+|+++.++                        ++++.|+.|++||+.+++.+..+..+ ..+..++
T Consensus       113 ---~~~~~~~~~~~s~dg~~l~------------------------~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~  164 (391)
T 1l0q_A          113 ---KTGKSPLGLALSPDGKKLY------------------------VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIA  164 (391)
T ss_dssp             ---ECSSSEEEEEECTTSSEEE------------------------EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEE
T ss_pred             ---eCCCCcceEEECCCCCEEE------------------------EEeCCCCEEEEEECCCCcEEEEEecC-CCcceEE
Confidence               2234678888988877652                        45566788999999998888888765 4569999


Q ss_pred             EeCCCcEE-EEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe---CCCcEEEEecCCCeEEEEEEE
Q psy8895         380 LHPTLYMF-ASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA---DNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       380 ~~~~~~~l-~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~---~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      |+|++..+ ++++.+ .+.+||..+++....+.. ...+.+++++|++ +|++++   .|+.|++||+++++.+..++.
T Consensus       165 ~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~  242 (391)
T 1l0q_A          165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec
Confidence            99999766 566655 599999999988877764 4578899999998 777776   689999999999988776643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.91  E-value=1.7e-22  Score=198.40  Aligned_cols=222  Identities=13%  Similarity=0.106  Sum_probs=167.2

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCc--EE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRT--VK  286 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~--i~  286 (479)
                      +.+.+|.+.+.+++|+|+|++|++++.++   .|++||+.+++.. .+..|...+.+++|+||++.|+ +++.|+.  |+
T Consensus       172 ~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~  250 (415)
T 2hqs_A          172 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY  250 (415)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence            34667889999999999999999999885   9999999998875 5677888999999999999887 6666654  99


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      +||+++++....   ..+...+.++.|+|+++.++.++.+ +.                       ..|++||+.+++. 
T Consensus       251 ~~d~~~~~~~~l---~~~~~~~~~~~~spdg~~l~~~s~~~g~-----------------------~~i~~~d~~~~~~-  303 (415)
T 2hqs_A          251 VMDLASGQIRQV---TDGRSNNTEPTWFPDSQNLAFTSDQAGR-----------------------PQVYKVNINGGAP-  303 (415)
T ss_dssp             EEETTTCCEEEC---CCCSSCEEEEEECTTSSEEEEEECTTSS-----------------------CEEEEEETTSSCC-
T ss_pred             EEECCCCCEEeC---cCCCCcccceEECCCCCEEEEEECCCCC-----------------------cEEEEEECCCCCE-
Confidence            999987654321   2344678899999999887765532 21                       1466678776653 


Q ss_pred             EEEccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC---cEE
Q psy8895         366 CTLTNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG---TMC  437 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg---~i~  437 (479)
                      ..+..+...+.+++|+|++.+++.++.+    .|.+||..+++.. .+..|. .+.+++|+|++ +|++++.|+   .|.
T Consensus       304 ~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~  381 (415)
T 2hqs_A          304 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLN  381 (415)
T ss_dssp             EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEE
Confidence            3455677789999999999988877643    5999999988764 455564 78999999999 788888777   799


Q ss_pred             EEecCCCeEEEEEEEeEecCCCCCceEEeeehhhhc
Q psy8895         438 FWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYL  473 (479)
Q Consensus       438 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (479)
                      +||+.++. .        ..++.....+.++|+++.
T Consensus       382 ~~d~~g~~-~--------~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          382 LVSTDGRF-K--------ARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             EEETTSCC-E--------EECCCSSSEEEEEEECCC
T ss_pred             EEECCCCc-E--------EEeeCCCCCCcCCccccc
Confidence            99987542 2        223344445666666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.90  E-value=7.6e-22  Score=194.73  Aligned_cols=233  Identities=12%  Similarity=0.095  Sum_probs=186.0

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-----EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-----SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+..+ ..+.+++|+|++.++++++.|+.|++||+.+++...     .+.+|...|.+++|++++.++++++.|+.|++|
T Consensus       118 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~  196 (433)
T 3bws_A          118 RFKTG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVF  196 (433)
T ss_dssp             EEECS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             EEcCC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEE
Confidence            34333 345689999988888899899999999999998876     345788899999999999999999999999999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCC----------------CCCCeEEEEe--
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT-TEADKTVKLYKEDDSAT----------------EESHPVITGS--  349 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs--  349 (479)
                      |+++.+.....  ..+...+.+++|+|++..+++ ++.++.|.+|+......                ++...+++++  
T Consensus       197 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~  274 (433)
T 3bws_A          197 DLKTLAYKATV--DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFS  274 (433)
T ss_dssp             ETTTCCEEEEE--ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEE
T ss_pred             ECCCceEEEEE--cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECC
Confidence            99876544322  134567899999999998854 45799999999765321                2345677777  


Q ss_pred             ------CCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEE
Q psy8895         350 ------HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICV  421 (479)
Q Consensus       350 ------~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~  421 (479)
                            .|+.|++||+.+++.+..+ .|...+..++|+|++. ++++++.+ .+.+||..+++....+. +...+.++++
T Consensus       275 ~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~  352 (433)
T 3bws_A          275 ASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIAL  352 (433)
T ss_dssp             SCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEE
T ss_pred             CCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEE
Confidence                  5889999999998877766 4566889999999985 55665655 59999999998887776 6677899999


Q ss_pred             cCCC-EEEEEeC---------------CCcEEEEecCCCeEEEEEE
Q psy8895         422 NNEG-VLVSGAD---------------NGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       422 ~~~~-~l~sg~~---------------dg~i~lWd~~~~~~~~~~~  451 (479)
                      +|++ .|++++.               ||.|++||..+++.++.+.
T Consensus       353 s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~  398 (433)
T 3bws_A          353 SPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE  398 (433)
T ss_dssp             CTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence            9998 6777765               5799999999998877664

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.89  E-value=2.1e-20  Score=183.47  Aligned_cols=181  Identities=17%  Similarity=0.116  Sum_probs=138.4

Q ss_pred             ecCCCccEEEEEEcCCCcEEE-EEeCCCe--EEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC--cEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFA-TGSADKI--IKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR--TVKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~-sgs~d~~--i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~--~i~~w  288 (479)
                      +.+|.+.+.+++|+|||++|+ +++.|+.  |.+||+.+++. ..+..|...+.+++|+||++.|+.++. ++  .|.+|
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~  296 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  296 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence            445677899999999999887 6766654  99999998876 567788889999999999999988776 44  67777


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      |+.+++....   ..+...+..+.|+|++++++.++.+.                      .+..|++||+.+++. ..+
T Consensus       297 d~~~~~~~~l---~~~~~~~~~~~~spdG~~l~~~~~~~----------------------g~~~i~~~d~~~~~~-~~l  350 (415)
T 2hqs_A          297 NINGGAPQRI---TWEGSQNQDADVSSDGKFMVMVSSNG----------------------GQQHIAKQDLATGGV-QVL  350 (415)
T ss_dssp             ETTSSCCEEC---CCSSSEEEEEEECTTSSEEEEEEECS----------------------SCEEEEEEETTTCCE-EEC
T ss_pred             ECCCCCEEEE---ecCCCcccCeEECCCCCEEEEEECcC----------------------CceEEEEEECCCCCE-EEe
Confidence            8876543221   12334677899999998877654321                      135788899988766 445


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      ..+. .+.+++|+|++..++.++.+    .+.+||.. +.....+.+|.+.|.+++++|.
T Consensus       351 ~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~  408 (415)
T 2hqs_A          351 SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY  408 (415)
T ss_dssp             CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred             cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence            5554 89999999999987776644    38899986 5667788999999999999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.88  E-value=1.6e-20  Score=205.59  Aligned_cols=227  Identities=11%  Similarity=0.092  Sum_probs=173.9

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-CceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      ..+.+|.+.+.++.|+++ .++++++.|+.++||.+.. +.....+..|. .+...+|+|||+.++.+ .++.|.+||++
T Consensus       197 ~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~  273 (1045)
T 1k32_A          197 KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPD  273 (1045)
T ss_dssp             EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTT
T ss_pred             EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCC
Confidence            345789999999999988 7777888899999998753 33445555555 35677999999988887 58999999984


Q ss_pred             CCCcccCCCCC---------CCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCCC-----C-----------CCCeE
Q psy8895         292 YNKAPVQPGSM---------DSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSAT-----E-----------ESHPV  345 (479)
Q Consensus       292 ~~~~~~~~~~~---------~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-----~-----------~~~~l  345 (479)
                      ..+.. .....         .+...+..+.|+ |+++.++.++ ++.+.+|+......     .           ++..+
T Consensus       274 ~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~sdg~~l  351 (1045)
T 1k32_A          274 TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAF  351 (1045)
T ss_dssp             TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEE
T ss_pred             ceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEcCCCeE
Confidence            33222 11000         012257889999 9999888887 77888888654321     0           22457


Q ss_pred             EEEeCCCcEE-EEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         346 ITGSHDCTIR-LWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       346 ~sgs~d~~v~-iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      +.++.+..+. +||+..++.. .+.+|...+..++|+|+++.+++++.+ .+.+||..+++......+|.+.+..++|+|
T Consensus       352 ~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp  430 (1045)
T 1k32_A          352 IHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD  430 (1045)
T ss_dssp             EEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT
T ss_pred             EEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC
Confidence            7777788888 8999876543 444788899999999999999888877 599999999998887878999999999999


Q ss_pred             CC-EEEEEeCCC----------cEEEEecCCCe
Q psy8895         424 EG-VLVSGADNG----------TMCFWDWRTGY  445 (479)
Q Consensus       424 ~~-~l~sg~~dg----------~i~lWd~~~~~  445 (479)
                      |+ +|++++.++          .|++||+.+++
T Consensus       431 DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          431 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            99 788777654          89999999886

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.88  E-value=1.8e-20  Score=198.05  Aligned_cols=226  Identities=12%  Similarity=0.099  Sum_probs=161.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC----------------EEEEEEcCCCCEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS----------------VRGLTVSPRHPYLFS  278 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~----------------v~~v~~~~~~~~l~s  278 (479)
                      +..|...+.+++|+|||++|+.++. +.|.+||+.+++.......+...                +..++|+|||++|++
T Consensus       147 l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~  225 (741)
T 2ecf_A          147 LTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAY  225 (741)
T ss_dssp             CCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEE
T ss_pred             cccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEE
Confidence            4457778999999999999999884 69999999988766544444332                377999999999998


Q ss_pred             EECCC---------------------------------cEEEEECCC-CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895         279 CGDDR---------------------------------TVKCWDLEY-NKAPVQPGSMDSESGIFSMTFDNSGSRLITTE  324 (479)
Q Consensus       279 ~~~d~---------------------------------~i~~wd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  324 (479)
                      ++.|+                                 .|.+||+++ ++.........+...+..+.| |+++.++.++
T Consensus       226 ~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~  304 (741)
T 2ecf_A          226 ARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR  304 (741)
T ss_dssp             EEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred             EEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence            87765                                 788899877 554322111124456889999 9999988765


Q ss_pred             C-----CCeEEEEeCCCCC---------------------CCCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCceEE
Q psy8895         325 A-----DKTVKLYKEDDSA---------------------TEESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       325 ~-----d~~i~~~~~~~~~---------------------~~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v~~  377 (479)
                      .     +..|.+|+.....                     .+++..+++++.|+.++||.+. .++ ...+..|...|..
T Consensus       305 ~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~  383 (741)
T 2ecf_A          305 QSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDE  383 (741)
T ss_dssp             EETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEE
T ss_pred             ecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEe
Confidence            3     4568888865421                     1234567888899988888776 344 7778788888888


Q ss_pred             E-EEeCCCcEE-EEEcCC---cEEEEeCCC-CeEEeeecCCcceEEEEEEcCCC-EEEEEeCC----CcEEEEecCCC
Q psy8895         378 V-ALHPTLYMF-ASASPD---NIKQWKCPE-GKFIQNLPGHNAIINSICVNNEG-VLVSGADN----GTMCFWDWRTG  444 (479)
Q Consensus       378 i-~~~~~~~~l-~s~s~d---~i~~w~~~~-~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d----g~i~lWd~~~~  444 (479)
                      + .|+|++..+ ++++.+   .+.+|+... +.....+.. ...+..+.|+||+ .|+....+    ..+.+|+...+
T Consensus       384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            7 599999755 455554   588998754 554556655 5567899999999 55544332    46788887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.85  E-value=1.6e-19  Score=182.80  Aligned_cols=237  Identities=13%  Similarity=0.099  Sum_probs=182.0

Q ss_pred             eeEEEec-CCCccEEEEEEcCCCcEEEEEeCCCeEEEEEC--CCCceEEEEecCCcCEEEEEEcC----CCCEEEEEE-C
Q psy8895         210 KLYRVIS-GHLGWVRCVAVEPGNEWFATGSADKIIKVWDL--ATGKLKLSLTGHVGSVRGLTVSP----RHPYLFSCG-D  281 (479)
Q Consensus       210 ~~~~~~~-~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~--~~~~~~~~~~~h~~~v~~v~~~~----~~~~l~s~~-~  281 (479)
                      +...++. +|.  +.+++|+|+|++|++++.|++|++||+  .+++.+..+.. ......++|+|    |++++++++ .
T Consensus       170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~  246 (543)
T 1nir_A          170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYW  246 (543)
T ss_dssp             CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred             eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEcc
Confidence            4445565 443  889999999999999999999999999  88888888874 44579999999    999999887 5


Q ss_pred             CCcEEEEECCCCCcccCCCCC---------CCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCC-------------
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSM---------DSESGIFSMTFDNSGSR-LITTEADKTVKLYKEDDSA-------------  338 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~-------------  338 (479)
                      +++|.+||..+.+........         .....+..+.+++++.. +++...+++|.+|+.....             
T Consensus       247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~  326 (543)
T 1nir_A          247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL  326 (543)
T ss_dssp             SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSC
T ss_pred             CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCc
Confidence            899999999876654321110         12336889999997665 5566778899999976421             


Q ss_pred             -----CCCCCeEE-EEeCCCcEEEEECCCCeeEEEEcc----CCCceEEEEEeCC-CcEEEEEc--CCcEEEEeCCC---
Q psy8895         339 -----TEESHPVI-TGSHDCTIRLWDLAAGKSLCTLTN----HKKSVRSVALHPT-LYMFASAS--PDNIKQWKCPE---  402 (479)
Q Consensus       339 -----~~~~~~l~-sgs~d~~v~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~-~~~l~s~s--~d~i~~w~~~~---  402 (479)
                           .++..+++ ++..+++|.+||+.+++.+.++..    |.+....+ ++|+ +.+++++.  ++.|.+|+..+   
T Consensus       327 ~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~  405 (543)
T 1nir_A          327 HDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH  405 (543)
T ss_dssp             CCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred             cCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence                 12334454 455689999999999999888864    55444333 4776 77788875  35699999988   


Q ss_pred             ----CeEEeeecCCcceEEEEEEcCCC-EEEEEe-------CCCcEEEEecCCCeEE-EEE
Q psy8895         403 ----GKFIQNLPGHNAIINSICVNNEG-VLVSGA-------DNGTMCFWDWRTGYNF-QRL  450 (479)
Q Consensus       403 ----~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-------~dg~i~lWd~~~~~~~-~~~  450 (479)
                          .++++++++|...+..+.++|++ +|++++       .+++|.+||+++++.. +.+
T Consensus       406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~  466 (543)
T 1nir_A          406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVL  466 (543)
T ss_dssp             TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEE
T ss_pred             chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEe
Confidence                88999999999888889999999 777776       2789999999998866 444

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.9e-19  Score=189.01  Aligned_cols=225  Identities=12%  Similarity=0.109  Sum_probs=164.4

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-----CceEEEEecCCcC--------------EEEEEEcCCCCEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-----GKLKLSLTGHVGS--------------VRGLTVSPRHPYLFS  278 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-----~~~~~~~~~h~~~--------------v~~v~~~~~~~~l~s  278 (479)
                      +.+.+.+++|+|||++|+++ .|+.|.+||+.+     ++.......+...              +.+++|+|||++|++
T Consensus       119 ~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~  197 (706)
T 2z3z_A          119 TNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAF  197 (706)
T ss_dssp             CTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEE
T ss_pred             CcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEE
Confidence            44556678999999999985 679999999998     7765544444333              478999999999998


Q ss_pred             EE---------------------------------CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC
Q psy8895         279 CG---------------------------------DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA  325 (479)
Q Consensus       279 ~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  325 (479)
                      ++                                 .+..|++||+++++.........+...+..+.|+|+++.+++++.
T Consensus       198 ~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  277 (706)
T 2z3z_A          198 YRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEV  277 (706)
T ss_dssp             EEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEe
Confidence            87                                 446899999987654322211234456889999999999988776


Q ss_pred             CC-----eEEEEeCCCC-C---------------------CC--CCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCCce
Q psy8895         326 DK-----TVKLYKEDDS-A---------------------TE--ESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSV  375 (479)
Q Consensus       326 d~-----~i~~~~~~~~-~---------------------~~--~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~~v  375 (479)
                      ++     .+.+|+.... .                     .+  ++..+++++.|+.+++|++. +++.+..+..|...+
T Consensus       278 ~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v  357 (706)
T 2z3z_A          278 NRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV  357 (706)
T ss_dssp             CTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE
T ss_pred             CCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE
Confidence            65     7888886543 1                     12  44567888899999999886 567777888888788


Q ss_pred             EE-EEEeCCCcEEE-EEcCC-----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE-eCC---CcEEEEecCC
Q psy8895         376 RS-VALHPTLYMFA-SASPD-----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG-ADN---GTMCFWDWRT  443 (479)
Q Consensus       376 ~~-i~~~~~~~~l~-s~s~d-----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg-~~d---g~i~lWd~~~  443 (479)
                      .. ++|+|++..++ +++.+     .+..|+..+++ ...+. |...+.+++|+||+ +++.. +.+   +.|.+||+.+
T Consensus       358 ~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          358 TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred             EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence            77 79999987654 44443     35666776665 33333 66678899999999 66554 333   5699999998


Q ss_pred             Ce
Q psy8895         444 GY  445 (479)
Q Consensus       444 ~~  445 (479)
                      ++
T Consensus       436 ~~  437 (706)
T 2z3z_A          436 GS  437 (706)
T ss_dssp             CE
T ss_pred             Ce
Confidence            86

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=5.5e-20  Score=170.82  Aligned_cols=183  Identities=13%  Similarity=0.101  Sum_probs=129.3

Q ss_pred             EEEEEEcCCCcEEEEEe--CCCeEEEEE--CCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCC--CC
Q psy8895         222 VRCVAVEPGNEWFATGS--ADKIIKVWD--LATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEY--NK  294 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs--~d~~i~iWd--~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~--~~  294 (479)
                      +.+++|+|+|++|++++  .++..+||.  +.++.. ..+..+. .+..++|+|+++.++ +++.|+.+++|++..  .+
T Consensus        87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc
Confidence            44568899999999998  334555554  455543 3444443 588999999999877 778899999998642  22


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-CCeeEEEEccCCC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKK  373 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h~~  373 (479)
                      .. ..  ......+.++.|+|+++.++.++                        ..|+.+++|++. .+..+..+..|..
T Consensus       165 ~~-~~--~~~~~~~~~~~~s~dg~~l~~~~------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~  217 (297)
T 2ojh_A          165 ET-RL--THGEGRNDGPDYSPDGRWIYFNS------------------------SRTGQMQIWRVRVDGSSVERITDSAY  217 (297)
T ss_dssp             EE-EC--CCSSSCEEEEEECTTSSEEEEEE------------------------CTTSSCEEEEEETTSSCEEECCCCSE
T ss_pred             ce-Ec--ccCCCccccceECCCCCEEEEEe------------------------cCCCCccEEEECCCCCCcEEEecCCc
Confidence            21 11  23345788999999888765433                        235556666664 3455667777888


Q ss_pred             ceEEEEEeCCCcEEEEEcCC------------cEEEEeCCCCeE--EeeecCCcceEEEEEEcCCC-EEEEEeCC
Q psy8895         374 SVRSVALHPTLYMFASASPD------------NIKQWKCPEGKF--IQNLPGHNAIINSICVNNEG-VLVSGADN  433 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d------------~i~~w~~~~~~~--~~~~~~h~~~v~~l~~~~~~-~l~sg~~d  433 (479)
                      .+..++|+|++..++.++.+            .+.+||..+++.  +..+.+|...+..++|+|++ .|++++.|
T Consensus       218 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  292 (297)
T 2ojh_A          218 GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYF  292 (297)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred             ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEec
Confidence            89999999999988776543            389999988765  44455788888899999998 67766655

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.85  E-value=4.4e-19  Score=194.11  Aligned_cols=221  Identities=10%  Similarity=-0.012  Sum_probs=173.7

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-----------CCcCEEEEEEc-CCCCEEEEEECC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-----------HVGSVRGLTVS-PRHPYLFSCGDD  282 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-----------h~~~v~~v~~~-~~~~~l~s~~~d  282 (479)
                      +..|. .+...+|+|+|++|+.++ ++.|.+||+...... .+.+           |...+.+++|+ |||+.+++++ +
T Consensus       241 l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~  316 (1045)
T 1k32_A          241 HTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-R  316 (1045)
T ss_dssp             CCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-T
T ss_pred             ecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-c
Confidence            34444 356679999999998885 899999999554443 5544           33468899999 9999998877 7


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCC-CeEEEEEeCCCCEEEEEeCCCeEE-EEeCCCCC----------------CCCCCe
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSES-GIFSMTFDNSGSRLITTEADKTVK-LYKEDDSA----------------TEESHP  344 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~-~~~~~~~~----------------~~~~~~  344 (479)
                      +.+.+|++........   ..+.. .+..+.|+ +++.++.++.+..+. +|+.....                .+++..
T Consensus       317 ~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKV---PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEEC---SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEc---cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCE
Confidence            8999999876543221   12334 68889999 999999888877787 88865321                134567


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC-C----------cEEEEeCCCCeEEeeecCCc
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP-D----------NIKQWKCPEGKFIQNLPGHN  413 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d----------~i~~w~~~~~~~~~~~~~h~  413 (479)
                      +++++.++.|++||+.+++....+.+|...+.+++|+||++.++.++. +          .+.+||..+++ ...+..|.
T Consensus       393 la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~  471 (1045)
T 1k32_A          393 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN  471 (1045)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred             EEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence            899999999999999999887777789999999999999998877653 1          59999999887 67788888


Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      ..+..++|+||| .|+.++.++..++|+....
T Consensus       472 ~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          472 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             SBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             cccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            889999999999 8999999999899986543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.85  E-value=1.6e-18  Score=164.40  Aligned_cols=216  Identities=11%  Similarity=0.141  Sum_probs=146.2

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCc-EEEEECCC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRT-VKCWDLEY  292 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~-i~~wd~~~  292 (479)
                      +..+..+++|+|+|++++++..++   .|.+||+.+++.+..+..+. ...+++|+|+++++++ ...++. +.+|++..
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            444444589999999999655553   89999999998887776543 5689999999986554 456688 99999874


Q ss_pred             CCcccCC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee---EEE
Q psy8895         293 NKAPVQP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS---LCT  367 (479)
Q Consensus       293 ~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~---~~~  367 (479)
                      .......  ...........+.|+|+++++++                        ++..++.|++||+.+++.   +..
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v------------------------~~~~~~~v~v~d~~~~~~~~~~~~  216 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFV------------------------ANLIGNSIGILETQNPENITLLNA  216 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEE------------------------EETTTTEEEEEECSSTTSCEEEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEE------------------------EeCCCCeEEEEECCCCcccceeee
Confidence            3321100  00122344677888888776543                        334467788888877776   666


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcC-C-cEEEEeCCCCeE--EeeecCC----cc---eEEEEEEcCCC-EE-EEEeCCC
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASP-D-NIKQWKCPEGKF--IQNLPGH----NA---IINSICVNNEG-VL-VSGADNG  434 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~-d-~i~~w~~~~~~~--~~~~~~h----~~---~v~~l~~~~~~-~l-~sg~~dg  434 (479)
                      +..+ ..+..++|+|+++.+..+.. + .+.+||..+++.  +..+..+    ..   ....++|+|++ +| +++..++
T Consensus       217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  295 (331)
T 3u4y_A          217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISR  295 (331)
T ss_dssp             EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTT
T ss_pred             ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCC
Confidence            6543 56789999999986555443 3 599999999887  3333322    22   23568999998 55 5556677


Q ss_pred             cEEEEecCCCeEEEEEEEeEecCCCCCceEE
Q psy8895         435 TMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF  465 (479)
Q Consensus       435 ~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  465 (479)
                      .|.+||+.+..      +.++...+..+.+.
T Consensus       296 ~v~v~d~~~~~------~~~~~~~~~~g~~~  320 (331)
T 3u4y_A          296 ELKVFTISGKV------VGYVAGIEANGGIA  320 (331)
T ss_dssp             EEEEEETTSCE------EEECTTCCCBSCEE
T ss_pred             cEEEEEecCCc------ccceecccccCCeE
Confidence            99999998753      23455555555444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=9.1e-19  Score=166.14  Aligned_cols=209  Identities=14%  Similarity=0.107  Sum_probs=150.4

Q ss_pred             EEEEcCCCcEEEEEe------------CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         224 CVAVEPGNEWFATGS------------ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs------------~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      +++|+|+|+++++++            .++.|.+||+.+++....+.. ...+.+++|+|++++++++  ++.|.+||++
T Consensus        86 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~  162 (337)
T 1pby_B           86 GAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPE  162 (337)
T ss_dssp             CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETT
T ss_pred             ceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECC
Confidence            467888998888876            579999999999888777664 3457788999999988877  6889999998


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE--EEeCCCCCCCCCCeEEEEeCCC----------cEEEEEC
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK--LYKEDDSATEESHPVITGSHDC----------TIRLWDL  359 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~--~~~~~~~~~~~~~~l~sgs~d~----------~v~iwd~  359 (479)
                      +.+.............   +.++|++..++.....+...  +|.             ....++          .|.+||+
T Consensus       163 ~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~~~d~  226 (337)
T 1pby_B          163 AGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFY-------------TARKDIDPADPTAYRTGLLTMDL  226 (337)
T ss_dssp             TTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEE-------------EEBTTSCTTSGGGEEEEEEEEET
T ss_pred             CCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCceeeeee-------------ccccccccccccccccceEEEeC
Confidence            7654322111110111   25677777655444332211  221             111222          6899999


Q ss_pred             CCCeeE-EEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895         360 AAGKSL-CTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMC  437 (479)
Q Consensus       360 ~~~~~~-~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~  437 (479)
                      .+++.. ..+..+...+..++|+|++..++.+ ++.+.+||..+++.+..+..+ ..+.+++++|++ +|++++.|+.|+
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~  304 (337)
T 1pby_B          227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLA  304 (337)
T ss_dssp             TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEE
T ss_pred             CCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEE
Confidence            988764 2344566678899999999888777 567999999999888777644 346788999998 788888999999


Q ss_pred             EEecCCCeEEEEEEEe
Q psy8895         438 FWDWRTGYNFQRLQVR  453 (479)
Q Consensus       438 lWd~~~~~~~~~~~~~  453 (479)
                      +||+++++.++++++.
T Consensus       305 v~d~~~~~~~~~~~~~  320 (337)
T 1pby_B          305 AYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEETTTCCEEEEEECG
T ss_pred             EEECcCCcEEEEEEcC
Confidence            9999999888776654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=1.3e-17  Score=158.43  Aligned_cols=200  Identities=13%  Similarity=0.162  Sum_probs=131.1

Q ss_pred             cEEEEEEcCCCcEEEEEeC-CCeEEEEECC---CCceEEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCC-CC
Q psy8895         221 WVRCVAVEPGNEWFATGSA-DKIIKVWDLA---TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEY-NK  294 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~---~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~-~~  294 (479)
                      .+.+++|+|+|+++++++. ++.|.+||+.   +++....+..+ ..+.+++|+|+++++++++ .++.|++||+.. ++
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            3457889999998876665 8899999994   33444445444 3588999999999888877 899999999976 33


Q ss_pred             cccC---CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEE
Q psy8895         295 APVQ---PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTL  368 (479)
Q Consensus       295 ~~~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~  368 (479)
                      ....   .........+..+.|+|+++.+++++ .++.+.+|+.+.                       .+++.  ...+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~-----------------------~~g~~~~~~~~  220 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD-----------------------PHGNIECVQTL  220 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC-----------------------TTSCCEEEEEE
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC-----------------------CCCcEEEEeec
Confidence            2110   01112234677899999888665433 444555554421                       11111  1111


Q ss_pred             c----c--CCCceEEEEEeCCCcEEE-EEcCC-cEEEEeCC--C--CeEEeeecCCcceEEEEEEcCCC-EEEEEe-CCC
Q psy8895         369 T----N--HKKSVRSVALHPTLYMFA-SASPD-NIKQWKCP--E--GKFIQNLPGHNAIINSICVNNEG-VLVSGA-DNG  434 (479)
Q Consensus       369 ~----~--h~~~v~~i~~~~~~~~l~-s~s~d-~i~~w~~~--~--~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg  434 (479)
                      .    +  ....+..++|+|++..++ +...+ .+.+|+..  +  .+.+..+..+.. +..++++|++ +|++++ .|+
T Consensus       221 ~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~  299 (343)
T 1ri6_A          221 DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSH  299 (343)
T ss_dssp             ECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTC
T ss_pred             cccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCC
Confidence            1    1  123567899999987555 55444 59999987  3  344555555554 7889999998 676666 689


Q ss_pred             cEEEEec--CCCe
Q psy8895         435 TMCFWDW--RTGY  445 (479)
Q Consensus       435 ~i~lWd~--~~~~  445 (479)
                      .|.+|++  ++|.
T Consensus       300 ~v~v~~~d~~~g~  312 (343)
T 1ri6_A          300 HISVYEIVGEQGL  312 (343)
T ss_dssp             EEEEEEEETTTTE
T ss_pred             eEEEEEEcCCCce
Confidence            9999954  4664

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.83  E-value=1.4e-17  Score=159.14  Aligned_cols=186  Identities=16%  Similarity=0.188  Sum_probs=140.5

Q ss_pred             EEEEEEcCCCcEEEEEe--CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         222 VRCVAVEPGNEWFATGS--ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs--~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      ..+++|+|+|++++.++  .++.|.+||+.+++....+..+...+..++|+|++++++.++.++.|.+||+++.+.....
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~  222 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK  222 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE
Confidence            57899999999877766  4789999999999988888756666889999999999999999999999999876543221


Q ss_pred             --CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         300 --GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       300 --~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                        ....+...+..+.++|+++.++++                        ...++.|.+||+.+++.+..+..+..  ..
T Consensus       223 ~~~~~~~~~~~~~~~~s~dg~~l~~~------------------------~~~~~~v~~~d~~~~~~~~~~~~~~~--~~  276 (353)
T 3vgz_A          223 KLLDDGKEHFFINISLDTARQRAFIT------------------------DSKAAEVLVVDTRNGNILAKVAAPES--LA  276 (353)
T ss_dssp             ECCCSSSCCCEEEEEEETTTTEEEEE------------------------ESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred             EcCCCCCCcccceEEECCCCCEEEEE------------------------eCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence              111234457778999988876543                        23357788888888888777764432  56


Q ss_pred             EEEeCCCc-EEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         378 VALHPTLY-MFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       378 i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      ++|+|++. ++++...+ .+.+||..+++.+..+..+. .+..++++|++ .|+.+..++
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECTTSCEEEEEEECC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcCCCCEEEEEEccc
Confidence            99999987 55555444 59999999999888776544 67899999998 555555443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=2.2e-18  Score=164.43  Aligned_cols=225  Identities=12%  Similarity=0.116  Sum_probs=153.6

Q ss_pred             EEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCC------cCEEEEEEcCCCCEEEEEECC------------Cc
Q psy8895         224 CVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHV------GSVRGLTVSPRHPYLFSCGDD------------RT  284 (479)
Q Consensus       224 ~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d------------~~  284 (479)
                      .++|+|+|+++ ++++.++.|.+||+.+++....+....      ..+..++|+|+++++++++.+            +.
T Consensus        47 ~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  126 (349)
T 1jmx_B           47 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR  126 (349)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCe
Confidence            46788999865 556678999999999998877665332      236789999999999988765            89


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC----CC------------------
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE----ES------------------  342 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~----~~------------------  342 (479)
                      |.+||+++++.............+.+++|+|+++ +++++.  .+.+|+.......    ..                  
T Consensus       127 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (349)
T 1jmx_B          127 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPH  203 (349)
T ss_dssp             EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred             EEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecC
Confidence            9999997643221111112233577888999999 665543  4888887543210    00                  


Q ss_pred             ----CeE-----EEEeCC-----------CcEEEEECCCCee-EEEEccCCCceEEEEEeC-CCcEEEEEcCCcEEEEeC
Q psy8895         343 ----HPV-----ITGSHD-----------CTIRLWDLAAGKS-LCTLTNHKKSVRSVALHP-TLYMFASASPDNIKQWKC  400 (479)
Q Consensus       343 ----~~l-----~sgs~d-----------~~v~iwd~~~~~~-~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d~i~~w~~  400 (479)
                          ..+     +.-+.|           ..+..+|..+++. ...+..+...+..++++| ++..++.+ ++.+.+||.
T Consensus       204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~  282 (349)
T 1jmx_B          204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDL  282 (349)
T ss_dssp             CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEET
T ss_pred             CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEEC
Confidence                000     011111           0112255555432 122334556788999999 99888887 667999999


Q ss_pred             CCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         401 PEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       401 ~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .+++.+..+..+. .+.++++++++ .|++++.++.|++||.++++.++++++.
T Consensus       283 ~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~  335 (349)
T 1jmx_B          283 KQRKLIKAANLDH-TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  335 (349)
T ss_dssp             TTTEEEEEEECSS-CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             ccCeEEEEEcCCC-CccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence            9999887775432 46688999998 7777888999999999999888777653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.82  E-value=3e-19  Score=188.06  Aligned_cols=295  Identities=11%  Similarity=0.018  Sum_probs=185.9

Q ss_pred             ceEEEEEccCCceEEEecCCCeEEEEeecccceEeeeccccc---ceEEEEecCCCCccccceEEeccccEEEEeecccC
Q psy8895          35 SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTN---TIASVVTQASEPQVGTKTVLLESCERIMFVLGTAG  111 (479)
Q Consensus        35 ~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (479)
                      .+.+++|+|||+++++ +.|++|++||+.+++....+.+|..   .+.++.|+++...     ++...        ....
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~-----l~~~~--------~~~~   83 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREY-----ALFSY--------NVEP   83 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSE-----EEEEE--------SCCC
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCE-----EEEEe--------cCcc
Confidence            4678899999998887 7899999999999998888877764   3778888776432     11110        0000


Q ss_pred             ceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHHH
Q psy8895         112 FLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ  191 (479)
Q Consensus       112 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  191 (479)
                      .     ......+.+.+|++...+                                                   .    
T Consensus        84 ~-----~~~~~~~~i~~~d~~~~~---------------------------------------------------~----  103 (723)
T 1xfd_A           84 I-----YQHSYTGYYVLSKIPHGD---------------------------------------------------P----  103 (723)
T ss_dssp             C-----SSSCCCSEEEEEESSSCC---------------------------------------------------C----
T ss_pred             c-----eeecceeeEEEEECCCCc---------------------------------------------------e----
Confidence            0     000001222233221000                                                   0    


Q ss_pred             HHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCE-------
Q psy8895         192 QAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV-------  264 (479)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v-------  264 (479)
                                        +......+|...+.+++|+|||++|+.++. +.|.+||+.+++.......+...+       
T Consensus       104 ------------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~  164 (723)
T 1xfd_A          104 ------------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSD  164 (723)
T ss_dssp             ------------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECC
T ss_pred             ------------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccc
Confidence                              000001234555778899999999999986 799999999988766655544333       


Q ss_pred             -----------EEEEEcCCCCEEEEEECCC----------------------------------cEEEEECCCCCcccCC
Q psy8895         265 -----------RGLTVSPRHPYLFSCGDDR----------------------------------TVKCWDLEYNKAPVQP  299 (479)
Q Consensus       265 -----------~~v~~~~~~~~l~s~~~d~----------------------------------~i~~wd~~~~~~~~~~  299 (479)
                                 .+++|+|||+.|++++.|+                                  .|++||+.+.+.....
T Consensus       165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred             eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence                       7899999999999887553                                  7889998766532221


Q ss_pred             CCC----CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc-CCCc
Q psy8895         300 GSM----DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN-HKKS  374 (479)
Q Consensus       300 ~~~----~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~-h~~~  374 (479)
                      ...    .+...+..+.|+|+++.++.....+                     ..+..|++||+.+++....+.. +...
T Consensus       245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~---------------------~~~~~i~~~d~~~g~~~~~~~~~~~~~  303 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRA---------------------QNVSILTLCDATTGVCTKKHEDESEAW  303 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESSSSEEEEEEEETT---------------------SCEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred             eCCccCCCccceeEEEEEeCCCeEEEEEEcCC---------------------CCeEEEEEEeCCCCcceEEEEeccCCE
Confidence            110    1134578899999988765443211                     1235688999988877665543 3333


Q ss_pred             e----EEEEEeCCCcEEEE--EcC-C------cEEEEe-CCCCe--EEeeecC-CcceEEEEEEcCCC-EEEEEeC-C--
Q psy8895         375 V----RSVALHPTLYMFAS--ASP-D------NIKQWK-CPEGK--FIQNLPG-HNAIINSICVNNEG-VLVSGAD-N--  433 (479)
Q Consensus       375 v----~~i~~~~~~~~l~s--~s~-d------~i~~w~-~~~~~--~~~~~~~-h~~~v~~l~~~~~~-~l~sg~~-d--  433 (479)
                      +    ..++|+|+++.|+.  +.. +      .+.+|| ..+++  +...+.. +......++++||+ .|+..+. +  
T Consensus       304 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~  383 (723)
T 1xfd_A          304 LHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLP  383 (723)
T ss_dssp             CCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCT
T ss_pred             EeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCC
Confidence            3    37899999985553  333 3      267777 34444  1445544 33334447899998 6665544 4  


Q ss_pred             CcEEEEecCC
Q psy8895         434 GTMCFWDWRT  443 (479)
Q Consensus       434 g~i~lWd~~~  443 (479)
                      +.++||++..
T Consensus       384 ~~~~l~~~~~  393 (723)
T 1xfd_A          384 RRRQLYSANT  393 (723)
T ss_dssp             TCCEEEEECS
T ss_pred             cceEEEEEeC
Confidence            8899999874

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.81  E-value=3.2e-17  Score=156.62  Aligned_cols=202  Identities=12%  Similarity=0.131  Sum_probs=132.0

Q ss_pred             EEEEEEcCCCcEEEEEe-CCCeEEEEECC-CCce--EEEEec---------CCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         222 VRCVAVEPGNEWFATGS-ADKIIKVWDLA-TGKL--KLSLTG---------HVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs-~d~~i~iWd~~-~~~~--~~~~~~---------h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      +..++|+|+|++|++++ .++.|.+|++. ++..  +..+..         +...+.+++|+|+++++++...++.|++|
T Consensus        88 p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~  167 (347)
T 3hfq_A           88 PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY  167 (347)
T ss_dssp             CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence            34678999999888888 67999999995 3332  223321         12248899999999966666678899999


Q ss_pred             ECC-CCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC--Cee
Q psy8895         289 DLE-YNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA--GKS  364 (479)
Q Consensus       289 d~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~--~~~  364 (479)
                      |+. .++.... ............++|+|++++++++.                        ..++.|++|++..  ++.
T Consensus       168 ~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~------------------------~~~~~v~v~~~~~~~g~~  223 (347)
T 3hfq_A          168 NVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG------------------------ELSSQIASLKYDTQTGAF  223 (347)
T ss_dssp             EECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE------------------------TTTTEEEEEEEETTTTEE
T ss_pred             EECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe------------------------CCCCEEEEEEecCCCCce
Confidence            997 3322111 00112234577899999988665432                        2234444454442  221


Q ss_pred             --EEEEccCC------CceEEEEEeCCCcEE-EEEc-CCcEEEEeCC---CCeEEeeecCCcceEEEEEEcCCC-EEEEE
Q psy8895         365 --LCTLTNHK------KSVRSVALHPTLYMF-ASAS-PDNIKQWKCP---EGKFIQNLPGHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       365 --~~~~~~h~------~~v~~i~~~~~~~~l-~s~s-~d~i~~w~~~---~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg  430 (479)
                        +..+....      ..+..++|+|+++.+ ++.. ++.+.+|++.   +.+.+..+..+...+..++|+||+ +|+++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          224 TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred             EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEE
Confidence              22222221      458899999999865 5554 3469999986   225566677777778899999999 67666


Q ss_pred             eC-CCcEEEE--ecCCCeEE
Q psy8895         431 AD-NGTMCFW--DWRTGYNF  447 (479)
Q Consensus       431 ~~-dg~i~lW--d~~~~~~~  447 (479)
                      +. ++.|.+|  |.++|+..
T Consensus       304 ~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          304 NQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ETTTTEEEEEEECTTTCCEE
T ss_pred             EcCCCcEEEEEEeCCCCeEE
Confidence            64 5899999  55567544

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=4.2e-18  Score=174.71  Aligned_cols=182  Identities=14%  Similarity=0.069  Sum_probs=130.3

Q ss_pred             EEEEcCCCc--EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCCccc
Q psy8895         224 CVAVEPGNE--WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLEYNKAPV  297 (479)
Q Consensus       224 ~~~~~~~g~--~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~  297 (479)
                      ..+|+|+|+  .+++++.++. .+||+.+++.......+.   .+++|+|||+++++++.|    +.|++||+++++...
T Consensus       114 ~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~  189 (582)
T 3o4h_A          114 ILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  189 (582)
T ss_dssp             EEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE
T ss_pred             eeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE
Confidence            446666664  5555655554 499999987655444333   788999999999988777    789999998765432


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      .   ..+...+..++|+|+|+.++++..++.                       .+|++||+.+++.. .+.+|...+..
T Consensus       190 l---~~~~~~~~~~~~SpDG~~l~~~~~~~~-----------------------~~i~~~d~~~~~~~-~~~~~~~~~~~  242 (582)
T 3o4h_A          190 F---DSGEGSFSSASISPGMKVTAGLETARE-----------------------ARLVTVDPRDGSVE-DLELPSKDFSS  242 (582)
T ss_dssp             E---CCSSCEEEEEEECTTSCEEEEEECSSC-----------------------EEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred             e---ecCCCccccceECCCCCEEEEccCCCe-----------------------eEEEEEcCCCCcEE-EccCCCcChhh
Confidence            2   234456789999999988764433321                       16778888887776 66777777777


Q ss_pred             EE--------EeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCc---EEEEecC
Q psy8895         378 VA--------LHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGT---MCFWDWR  442 (479)
Q Consensus       378 i~--------~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~---i~lWd~~  442 (479)
                      ++        |+||+.++++++.+ .+++|++  ++...   .+.+.|.+++++ ++ ++++++.+.+   +.+||..
T Consensus       243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred             hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence            77        99999888888766 5999999  76654   334678899999 77 7777777644   5566654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.79  E-value=2.2e-18  Score=169.79  Aligned_cols=158  Identities=14%  Similarity=0.108  Sum_probs=118.8

Q ss_pred             CCccEEEEEEcCCCcEEE----EEeCCCeEEEEECCCC--------c---eEEEEecCCcCEEEEEEcCC-CCEEEEEEC
Q psy8895         218 HLGWVRCVAVEPGNEWFA----TGSADKIIKVWDLATG--------K---LKLSLTGHVGSVRGLTVSPR-HPYLFSCGD  281 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~----sgs~d~~i~iWd~~~~--------~---~~~~~~~h~~~v~~v~~~~~-~~~l~s~~~  281 (479)
                      |.+.|.+++|+|+|++|+    +|+.|+.|+|||+.++        +   ....+.+|...|.+++|+|+ +.++++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            567899999999999999    8899999999998654        1   13456779999999999998 789999999


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA  361 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~  361 (479)
                      |++|++||+++.......  ..+...+.+++|+|++++++                         +|+.|++|++||++ 
T Consensus       171 Dg~v~iwD~~~~~~~~~~--~~~~~~v~~v~wspdg~~la-------------------------sgs~dg~v~iwd~~-  222 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCAT--LPSTVAVTSVCWSPKGKQLA-------------------------VGKQNGTVVQYLPT-  222 (434)
T ss_dssp             TSCEEEEEESSSEEEEEE--ECGGGCEEEEEECTTSSCEE-------------------------EEETTSCEEEECTT-
T ss_pred             CCeEEEEEcCCCcceeec--cCCCCceeEEEEcCCCCEEE-------------------------EEcCCCcEEEEccC-
Confidence            999999999876432211  23456799999999877654                         55556667777766 


Q ss_pred             CeeEEEEccC-------CCceEEEEEeCCCcEEEEEc--CC------cEEEEeCCCC
Q psy8895         362 GKSLCTLTNH-------KKSVRSVALHPTLYMFASAS--PD------NIKQWKCPEG  403 (479)
Q Consensus       362 ~~~~~~~~~h-------~~~v~~i~~~~~~~~l~s~s--~d------~i~~w~~~~~  403 (479)
                      ++....+..|       ...|.+++|+++..++++.+  ++      .+++|++.+.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          223 LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            4444444433       33799999999887775433  21      2889998654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.79  E-value=9e-18  Score=176.75  Aligned_cols=205  Identities=9%  Similarity=-0.006  Sum_probs=127.4

Q ss_pred             cEEEEEEcCCCcEEEEEeCCC----------------------------------eEEEEECCCCceEEEEecC------
Q psy8895         221 WVRCVAVEPGNEWFATGSADK----------------------------------IIKVWDLATGKLKLSLTGH------  260 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~----------------------------------~i~iWd~~~~~~~~~~~~h------  260 (479)
                      .+.+++|+|||++|++++.|+                                  .|.+||+.+++....+..+      
T Consensus       174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~  253 (723)
T 1xfd_A          174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR  253 (723)
T ss_dssp             SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred             CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence            347899999999999887653                                  7999999988765566654      


Q ss_pred             CcCEEEEEEcCCCCEEEEEEC----CCcEEEEECCCCCcccCCCCCCCCCCe----EEEEEeCCCCEEEEEeCCCeEEEE
Q psy8895         261 VGSVRGLTVSPRHPYLFSCGD----DRTVKCWDLEYNKAPVQPGSMDSESGI----FSMTFDNSGSRLITTEADKTVKLY  332 (479)
Q Consensus       261 ~~~v~~v~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~i----~~~~~~~~~~~l~~~~~d~~i~~~  332 (479)
                      ...+..++|+|||+++++.+.    +..|++||+.+++...... ......+    ..+.|+|+++.++..         
T Consensus       254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~spdg~~l~~~---------  323 (723)
T 1xfd_A          254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE-DESEAWLHRQNEEPVFSKDGRKFFFI---------  323 (723)
T ss_dssp             SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-EECSSCCCCCCCCCEECTTSCSEEEE---------
T ss_pred             cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-eccCCEEeccCCCceEcCCCCeEEEE---------
Confidence            567899999999998876643    3579999998765432110 0011111    257888888866532         


Q ss_pred             eCCCCCCCCCCeEEEEeCCC------cEEEEE-CCCCe--eEEEEccCCCceEE-EEEeCCCcEEEEE-cC---CcEEEE
Q psy8895         333 KEDDSATEESHPVITGSHDC------TIRLWD-LAAGK--SLCTLTNHKKSVRS-VALHPTLYMFASA-SP---DNIKQW  398 (479)
Q Consensus       333 ~~~~~~~~~~~~l~sgs~d~------~v~iwd-~~~~~--~~~~~~~h~~~v~~-i~~~~~~~~l~s~-s~---d~i~~w  398 (479)
                                    ++..|+      .|.+|| ...++  +...+..+...+.. ++|+|++..++.. .+   ..+.+|
T Consensus       324 --------------~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  389 (723)
T 1xfd_A          324 --------------RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLY  389 (723)
T ss_dssp             --------------EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred             --------------EecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence                          122233      355566 33333  13444433344544 6999999877644 44   348889


Q ss_pred             eCCCC--eEEeeecC---CcceEEEEEEcCCC-EEEE-EeCCC--cEEEEecCCCeEEEE
Q psy8895         399 KCPEG--KFIQNLPG---HNAIINSICVNNEG-VLVS-GADNG--TMCFWDWRTGYNFQR  449 (479)
Q Consensus       399 ~~~~~--~~~~~~~~---h~~~v~~l~~~~~~-~l~s-g~~dg--~i~lWd~~~~~~~~~  449 (479)
                      ++...  .....+..   |...+..+.++||+ .|+. .+...  ...+++..++..+..
T Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~  449 (723)
T 1xfd_A          390 SANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD  449 (723)
T ss_dssp             EECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred             EEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence            87542  23334443   66778889999998 5543 33332  334556555544433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.79  E-value=2.8e-17  Score=152.46  Aligned_cols=206  Identities=12%  Similarity=0.074  Sum_probs=150.7

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCC-CceEEEEecCC-cCEEEEEEcCCCCEEEEEE--CCCcEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLAT-GKLKLSLTGHV-GSVRGLTVSPRHPYLFSCG--DDRTVKCWD  289 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~-~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~--~d~~i~~wd  289 (479)
                      .+..|.+.|.+++|+|+|++|++++ ++.|.+||+.+ ++.......|. ..+.+++|+|+++++++++  .++..++|.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            4556888999999999999999987 78999999999 87776666663 6788999999999999988  445566665


Q ss_pred             C--CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEE
Q psy8895         290 L--EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLC  366 (479)
Q Consensus       290 ~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~  366 (479)
                      +  ...... .   ......+..+.|+|+++.++                        ++++.|+.+++|++.. .....
T Consensus       115 ~~~~~~~~~-~---~~~~~~~~~~~~spdg~~l~------------------------~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A          115 LPSTGGTPR-L---MTKNLPSYWHGWSPDGKSFT------------------------YCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             EETTCCCCE-E---CCSSSSEEEEEECTTSSEEE------------------------EEEEETTEEEEEEEETTTCCEE
T ss_pred             EECCCCceE-E---eecCCCccceEECCCCCEEE------------------------EEECCCCceEEEEEECCCCcce
Confidence            4  433321 1   11223478889999888765                        2333455566665422 22344


Q ss_pred             EEccCCCceEEEEEeCCCcEEEEEc--CCcEEEEeCC-CCeEEeeecCCcceEEEEEEcCCC-EEEEEeCC---------
Q psy8895         367 TLTNHKKSVRSVALHPTLYMFASAS--PDNIKQWKCP-EGKFIQNLPGHNAIINSICVNNEG-VLVSGADN---------  433 (479)
Q Consensus       367 ~~~~h~~~v~~i~~~~~~~~l~s~s--~d~i~~w~~~-~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~d---------  433 (479)
                      .+..|...+.+++|+|++..++.++  ++.+.+|++. .+.....+..|...+..++++|++ +|++++.+         
T Consensus       167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~  246 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRD  246 (297)
T ss_dssp             ECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSS
T ss_pred             EcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCccccc
Confidence            5666778899999999998776554  3458888875 455667788888899999999999 77777765         


Q ss_pred             --CcEEEEecCCCeEEE
Q psy8895         434 --GTMCFWDWRTGYNFQ  448 (479)
Q Consensus       434 --g~i~lWd~~~~~~~~  448 (479)
                        +.|.+||+.+++...
T Consensus       247 ~~~~l~~~d~~~~~~~~  263 (297)
T 2ojh_A          247 LDVRVQLMDMDGGNVET  263 (297)
T ss_dssp             EEEEEEEEETTSCSCEE
T ss_pred             CceEEEEEecCCCCcee
Confidence              569999999886543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=2.7e-16  Score=150.24  Aligned_cols=231  Identities=10%  Similarity=0.049  Sum_probs=172.9

Q ss_pred             CccEEEEEEcCCCcEEEEEeC-------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEEC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSA-------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDL  290 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~-------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~  290 (479)
                      ...+..++|+|+|++++.++.       ++.|.+||..+++....+... ..+..++++|++++++ +...++.|.+||+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            456789999999998888774       568999999999888777643 3467889999999655 4556799999999


Q ss_pred             CCCCcccCCCCCC-------CCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCC-----------------CCCCCe
Q psy8895         291 EYNKAPVQPGSMD-------SESGIFSMTFDNSGSRLITTE--ADKTVKLYKEDDSA-----------------TEESHP  344 (479)
Q Consensus       291 ~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~-----------------~~~~~~  344 (479)
                      ++++.........       ....+..+.++|+++.++++.  .++.|.+|+.....                 .++...
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            8766432211100       011267899999999887776  47889999875431                 123456


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcc----CCCceEEEEEeCCCcEEEEE-cC-CcEEEEeCCCCeEEeeecCCcceEEE
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTN----HKKSVRSVALHPTLYMFASA-SP-DNIKQWKCPEGKFIQNLPGHNAIINS  418 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~----h~~~v~~i~~~~~~~~l~s~-s~-d~i~~w~~~~~~~~~~~~~h~~~v~~  418 (479)
                      +++++.++.|.+||+.+++.+..+..    +...+..++|+|++..+..+ .. +.+.+||..+++.+..+..+..  ..
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~  276 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA  276 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence            88888999999999999998877754    45578899999998755444 44 3599999999988877765432  46


Q ss_pred             EEEcCCC-E-EEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         419 ICVNNEG-V-LVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       419 l~~~~~~-~-l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      ++++|++ . +++...++.|.+||..+++.++.+..
T Consensus       277 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~  312 (353)
T 3vgz_A          277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT  312 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence            8899988 4 45555799999999999988776643

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=3.5e-18  Score=168.28  Aligned_cols=198  Identities=14%  Similarity=0.087  Sum_probs=145.3

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC----------ceEE-----EEecCCcCEEEEEEcCCCCEEE----EEE
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATG----------KLKL-----SLTGHVGSVRGLTVSPRHPYLF----SCG  280 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~----------~~~~-----~~~~h~~~v~~v~~~~~~~~l~----s~~  280 (479)
                      ..+..+++++++.++++++.|+ +++|+....          ....     ....+...|.+++|+|++++|+    +++
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence            3467889999999999999988 888874210          0111     1123566899999999999999    788


Q ss_pred             CCCcEEEEECCCC-----Cc---cc-CCCCCCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeC
Q psy8895         281 DDRTVKCWDLEYN-----KA---PV-QPGSMDSESGIFSMTFDNS-GSRLITTEADKTVKLYKEDDSATEESHPVITGSH  350 (479)
Q Consensus       281 ~d~~i~~wd~~~~-----~~---~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~  350 (479)
                      .|+.|++||+++.     +.   .. ......+...|.+++|+|+ +.                         .+++++.
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-------------------------~las~s~  170 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS-------------------------MVAVCLA  170 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT-------------------------EEEEEET
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC-------------------------EEEEEEC
Confidence            9999999998643     11   00 0111234667999999986 33                         3567788


Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC-------cceEEEEEEc
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH-------NAIINSICVN  422 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h-------~~~v~~l~~~  422 (479)
                      |++|++||++++..+....+|...|++++|+|++.+|++++.| .|++||.. ++....+..|       ...|.+++++
T Consensus       171 Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~  249 (434)
T 2oit_A          171 DGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI  249 (434)
T ss_dssp             TSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred             CCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence            8889999998887776677789999999999999999988877 49999997 5555555433       3489999999


Q ss_pred             CCCE-EE-EEeCCCc------EEEEecCCC
Q psy8895         423 NEGV-LV-SGADNGT------MCFWDWRTG  444 (479)
Q Consensus       423 ~~~~-l~-sg~~dg~------i~lWd~~~~  444 (479)
                      +++. ++ ....||.      +++|++++.
T Consensus       250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          250 GTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             ETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9883 32 3444543      899999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.76  E-value=5.7e-17  Score=171.14  Aligned_cols=218  Identities=11%  Similarity=0.069  Sum_probs=168.7

Q ss_pred             CccEEEEEEcCCCcEEEEEeC-CC-----eEEEEECCCCceEEEEecCCcC------------------------EEEEE
Q psy8895         219 LGWVRCVAVEPGNEWFATGSA-DK-----IIKVWDLATGKLKLSLTGHVGS------------------------VRGLT  268 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~-d~-----~i~iWd~~~~~~~~~~~~h~~~------------------------v~~v~  268 (479)
                      ...+.+++|+|||++|++++. |+     .|++||+.+++....+..+...                        +.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            356889999999999999998 88     9999999999887766654332                        78899


Q ss_pred             EcCCCCEEEEEECCCcEEEEECCCC---CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------
Q psy8895         269 VSPRHPYLFSCGDDRTVKCWDLEYN---KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------  338 (479)
Q Consensus       269 ~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------  338 (479)
                      |+|||++|++++. +.|++||+.++   ... ..  ..+...+..+.|+|+|+.++.++. +.|.+|+.....       
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~-~l--~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVR-QL--THGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCC-BC--CCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEE-Ec--ccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccC
Confidence            9999999998876 99999999876   322 11  233467899999999999988874 589999865321       


Q ss_pred             --------------------------CCCCCeEEEEeCCC---------------------------------cEEEEEC
Q psy8895         339 --------------------------TEESHPVITGSHDC---------------------------------TIRLWDL  359 (479)
Q Consensus       339 --------------------------~~~~~~l~sgs~d~---------------------------------~v~iwd~  359 (479)
                                                .+++..|++++.|+                                 .|++||+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~  270 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISP  270 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECS
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEEC
Confidence                                      12345678877665                                 7899999


Q ss_pred             CC-CeeEEEEc--cCCCceEEEEEeCCCcEEEEEcC-----C-cEEEEeCCCCeEEeeecCCcc----eEEEEEEcCCC-
Q psy8895         360 AA-GKSLCTLT--NHKKSVRSVALHPTLYMFASASP-----D-NIKQWKCPEGKFIQNLPGHNA----IINSICVNNEG-  425 (479)
Q Consensus       360 ~~-~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~-----d-~i~~w~~~~~~~~~~~~~h~~----~v~~l~~~~~~-  425 (479)
                      .+ ++......  .|...+..++| ||++.++.++.     + .|.+||..+++....+..+..    .+..++|+||+ 
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~  349 (741)
T 2ecf_A          271 AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS  349 (741)
T ss_dssp             STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC
T ss_pred             CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe
Confidence            88 77554432  47788999999 99998876542     2 489999999987766655432    34578999999 


Q ss_pred             EEEEEeCCCcEEEEecC
Q psy8895         426 VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~  442 (479)
                      ++++++.||.++||.+.
T Consensus       350 ~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          350 ILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEEEECTTSSCEEEEEC
T ss_pred             EEEEecCCCccEEEEEc
Confidence            78889999998888876

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.75  E-value=2.8e-17  Score=168.63  Aligned_cols=220  Identities=10%  Similarity=0.050  Sum_probs=159.6

Q ss_pred             CccEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEEC---CCcEEEEECCC-
Q psy8895         219 LGWVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGD---DRTVKCWDLEY-  292 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~---d~~i~~wd~~~-  292 (479)
                      ..+|.+++|+|||++||+++. |++++||++.+++.. .+..|. ..+..++|+|| +.+++++.   +...++|.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            356899999999999999887 999999999766554 455555 58999999999 77777765   45566765432 


Q ss_pred             -CCcccCCCCCCCCCCeEEEEEeCCCCE-EEEEeCCCeEEEEeCCCCCC--------------CCCCeEEEEeCC----C
Q psy8895         293 -NKAPVQPGSMDSESGIFSMTFDNSGSR-LITTEADKTVKLYKEDDSAT--------------EESHPVITGSHD----C  352 (479)
Q Consensus       293 -~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~~~~~~~~~--------------~~~~~l~sgs~d----~  352 (479)
                       .......   ..........|+|+++. +++...++.+.+|+......              +++..+++++.|    +
T Consensus        99 ~~g~~~~l---~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~  175 (582)
T 3o4h_A           99 RPGEEQRL---EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRV  175 (582)
T ss_dssp             STTCCEEC---TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEE
T ss_pred             CCCccccc---cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCe
Confidence             1111111   11123345577777653 33334444455898754321              345678877777    7


Q ss_pred             cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---cEEEEeCCCCeEEeeecCCcceEEEEE--------E
Q psy8895         353 TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---NIKQWKCPEGKFIQNLPGHNAIINSIC--------V  421 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---~i~~w~~~~~~~~~~~~~h~~~v~~l~--------~  421 (479)
                      .|++||+.+++.. .+..|...+..++||||++.++++..+   .|.+||..+++.. .+.+|...+..++        +
T Consensus       176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  253 (582)
T 3o4h_A          176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGY  253 (582)
T ss_dssp             EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEE
T ss_pred             EEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeE
Confidence            8999999887654 677888899999999999998866555   4899999998887 7777876666666        9


Q ss_pred             cCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         422 NNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       422 ~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      +||+ ++++++.|+++++|++  |...
T Consensus       254 spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          254 LPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             CTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             cCCCcEEEEEEcCCcEEEEEE--CCee
Confidence            9999 7889999999999999  6544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=6.8e-17  Score=170.38  Aligned_cols=221  Identities=10%  Similarity=0.032  Sum_probs=146.2

Q ss_pred             EEEEcCCCcEEEEEeCC---------CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         224 CVAVEPGNEWFATGSAD---------KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d---------~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      .++|+|||++|+.++.+         +.+.+||+.+++.. .+..|...+...+|||||+.|+.+ .|+.|++||+.++.
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~  143 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP  143 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence            46789999999998876         55679999998764 466677889999999999999887 46899999997655


Q ss_pred             cccCCCCCCCCCCe-----------------EEEEEeCCCCEEEEEeCCCe-EEEEeCCCCCCC--CCCeE------EEE
Q psy8895         295 APVQPGSMDSESGI-----------------FSMTFDNSGSRLITTEADKT-VKLYKEDDSATE--ESHPV------ITG  348 (479)
Q Consensus       295 ~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~--~~~~l------~sg  348 (479)
                      ..... ..+....+                 ..+.|+|+|+.++..+.|.+ +++|........  .....      ..|
T Consensus       144 ~~~lt-~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          144 SYRIT-WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CEECC-SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTT
T ss_pred             eEEEc-CCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCc
Confidence            43211 11111112                 24889999999988876554 666654211110  00000      011


Q ss_pred             e--CCCcEEEEECCC---Ce--eEEEEc------cCCCceEEEEEeCCCcEEEEEcC---C--cEEEEeCCCCe----EE
Q psy8895         349 S--HDCTIRLWDLAA---GK--SLCTLT------NHKKSVRSVALHPTLYMFASASP---D--NIKQWKCPEGK----FI  406 (479)
Q Consensus       349 s--~d~~v~iwd~~~---~~--~~~~~~------~h~~~v~~i~~~~~~~~l~s~s~---d--~i~~w~~~~~~----~~  406 (479)
                      .  .+.++++||+.+   ++  ....+.      +|...+..++|+||++.++....   +  .|.+||..+++    +.
T Consensus       223 ~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~  302 (740)
T 4a5s_A          223 AVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL  302 (740)
T ss_dssp             SCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred             CcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence            1  123689999998   73  233343      37788999999999986655422   2  38899998887    22


Q ss_pred             --eee--cCCcceEE-----EEEEcCCC-EEE-EEeC-C--CcEEEEecCCCeEE
Q psy8895         407 --QNL--PGHNAIIN-----SICVNNEG-VLV-SGAD-N--GTMCFWDWRTGYNF  447 (479)
Q Consensus       407 --~~~--~~h~~~v~-----~l~~~~~~-~l~-sg~~-d--g~i~lWd~~~~~~~  447 (479)
                        ..+  .+|...|.     ...|+||| .|+ ..++ +  ..|.+||..++...
T Consensus       303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~  357 (740)
T 4a5s_A          303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT  357 (740)
T ss_dssp             GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE
T ss_pred             EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE
Confidence              222  45665554     67899999 555 5553 3  45778888776543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=3.7e-15  Score=141.07  Aligned_cols=216  Identities=9%  Similarity=0.086  Sum_probs=154.0

Q ss_pred             EcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCc-ccCCCCCC
Q psy8895         227 VEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYNKA-PVQPGSMD  303 (479)
Q Consensus       227 ~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~-~~~~~~~~  303 (479)
                      |.+++ ..+++.+.++.|.+||+.+++....+..+.... .++|+|++++++.++. ++.|.+||+++.+. ....  ..
T Consensus         5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~   81 (331)
T 3u4y_A            5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI--QE   81 (331)
T ss_dssp             --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEE--EE
T ss_pred             EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEec--cc
Confidence            44444 457888899999999999999888877666666 9999999997776655 88999999987654 2211  11


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCC---eEEEEeCCCCCC----------------CCCC-eEEEEeCCCc-EEEEECCCC
Q psy8895         304 SESGIFSMTFDNSGSRLITTEADK---TVKLYKEDDSAT----------------EESH-PVITGSHDCT-IRLWDLAAG  362 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~d~---~i~~~~~~~~~~----------------~~~~-~l~sgs~d~~-v~iwd~~~~  362 (479)
                      ......+++|+|++++++++..++   .|.+|+......                +++. .+++...++. +.+|++...
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            122233389999999998555553   899999865321                2333 4455566688 999999864


Q ss_pred             eeEE----EEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCCCeE---EeeecCCcceEEEEEEcCCC-EEE-EEe
Q psy8895         363 KSLC----TLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPEGKF---IQNLPGHNAIINSICVNNEG-VLV-SGA  431 (479)
Q Consensus       363 ~~~~----~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~~~~---~~~~~~h~~~v~~l~~~~~~-~l~-sg~  431 (479)
                      ..+.    ...........++|+|+++ ++++...+ .+.+||..+++.   +..+..+ ..+..++++|++ +|+ +..
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEc
Confidence            3331    1123345679999999997 45555544 599999998887   7776654 456788999999 454 444


Q ss_pred             CCCcEEEEecCCCeE
Q psy8895         432 DNGTMCFWDWRTGYN  446 (479)
Q Consensus       432 ~dg~i~lWd~~~~~~  446 (479)
                      .++.|.+||.++++.
T Consensus       241 ~~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          241 STVDVFNFNQLSGTL  255 (331)
T ss_dssp             SEEEEEEEETTTTEE
T ss_pred             CCCEEEEEECCCCce
Confidence            688999999999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.71  E-value=7e-15  Score=141.51  Aligned_cols=183  Identities=15%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             CCCeEEEEECC-CCceEEEEe----cCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECC-CCCcccC-CCCCC-CCCCeE
Q psy8895         239 ADKIIKVWDLA-TGKLKLSLT----GHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLE-YNKAPVQ-PGSMD-SESGIF  309 (479)
Q Consensus       239 ~d~~i~iWd~~-~~~~~~~~~----~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~-~~~~~~~-~~~~~-~~~~i~  309 (479)
                      .++.+.+|++. +++....+.    .+...+.+++|+|||++++++.. ++.|++||++ +++.... ..... +...+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68899999997 465544333    24567899999999998887654 6799999997 4443211 10111 245688


Q ss_pred             EEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeE------EEEc----cCCC-----
Q psy8895         310 SMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSL------CTLT----NHKK-----  373 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~------~~~~----~h~~-----  373 (479)
                      .++|+|++++++++.. ++.+.+|+.+.                       .+++..      ..+.    +|..     
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~-----------------------~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  253 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDP-----------------------ATHMPVYTHHSFPLIPPGIPDRDPETGKG  253 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECT-----------------------TTCCEEEEEEEEESSCTTCCCBCTTTSSB
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeC-----------------------CCCcEEEccceEEcCCCCcCCcccccccc
Confidence            8999999988766543 44555554321                       122211      1111    2222     


Q ss_pred             -ceEEEE-EeCCCcEEEEEc--CC-----cEEEEeCC-CCeEEe---eecCCcceEEEEEEcC---CC-EEEEEeC-CCc
Q psy8895         374 -SVRSVA-LHPTLYMFASAS--PD-----NIKQWKCP-EGKFIQ---NLPGHNAIINSICVNN---EG-VLVSGAD-NGT  435 (479)
Q Consensus       374 -~v~~i~-~~~~~~~l~s~s--~d-----~i~~w~~~-~~~~~~---~~~~h~~~v~~l~~~~---~~-~l~sg~~-dg~  435 (479)
                       .+..++ |+|+++.++++.  .+     .|.+|++. +++...   ....+...+..++++|   |+ +|++++. +++
T Consensus       254 ~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~  333 (365)
T 1jof_A          254 LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW  333 (365)
T ss_dssp             SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE
T ss_pred             cccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe
Confidence             578999 999998765543  33     69999985 666543   2333444455678888   67 8887776 489


Q ss_pred             EEEEecCCC
Q psy8895         436 MCFWDWRTG  444 (479)
Q Consensus       436 i~lWd~~~~  444 (479)
                      |++|+++.+
T Consensus       334 v~v~~~~~~  342 (365)
T 1jof_A          334 LEIYRWKDE  342 (365)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEchh
Confidence            999999876

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.70  E-value=5e-16  Score=163.34  Aligned_cols=218  Identities=11%  Similarity=0.057  Sum_probs=145.6

Q ss_pred             EEEEEEcCCCcEEEEEeC---------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         222 VRCVAVEPGNEWFATGSA---------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~---------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      +.+++|+|||++|++++.         ++.|++||+.+++.+.. ......+..++|||||+.|+.+. |+.|++||+.+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence            356789999999998876         78999999999876210 11235688899999999998875 78999999976


Q ss_pred             CCcccCCCCCCCCCCe-----------------EEEEEeCCCCEEEEEeCCC----------------------------
Q psy8895         293 NKAPVQPGSMDSESGI-----------------FSMTFDNSGSRLITTEADK----------------------------  327 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~----------------------------  327 (479)
                      ++..... .......+                 ..+.|+|+|+.++.++.|.                            
T Consensus       140 g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g  218 (719)
T 1z68_A          140 DPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG  218 (719)
T ss_dssp             SCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred             CCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence            6543211 11111112                 4799999999999887552                            


Q ss_pred             ------eEEEEeCCCCCC-------------------------CCCCeEEEEeCC----CcEEEEE----CCCCeeEEEE
Q psy8895         328 ------TVKLYKEDDSAT-------------------------EESHPVITGSHD----CTIRLWD----LAAGKSLCTL  368 (479)
Q Consensus       328 ------~i~~~~~~~~~~-------------------------~~~~~l~sgs~d----~~v~iwd----~~~~~~~~~~  368 (479)
                            .+.+|+......                         ++...+++....    ..|.+||    +.+++....+
T Consensus       219 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~  298 (719)
T 1z68_A          219 AKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQ  298 (719)
T ss_dssp             SCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGG
T ss_pred             CCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEE
Confidence                  678888754321                         223344443322    2488899    7777655444


Q ss_pred             ----ccCCCceE-----EEEEeCCCcEEE--EEcCC---cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeC--
Q psy8895         369 ----TNHKKSVR-----SVALHPTLYMFA--SASPD---NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGAD--  432 (479)
Q Consensus       369 ----~~h~~~v~-----~i~~~~~~~~l~--s~s~d---~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~--  432 (479)
                          .+|...+.     .+.|+|++..++  ++..+   .+.+|+..+++ ...+..+...+..+.+++++.|+..+.  
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~d~~~i~~~~~~~  377 (719)
T 1z68_A          299 EHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRVTQDSLFYSSNEF  377 (719)
T ss_dssp             EEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEECSSEEEEEESCG
T ss_pred             ecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEEeCCEEEEEEecC
Confidence                36776676     889999998443  33333   37788887766 445666666676666564445554444  


Q ss_pred             ---CCcEEEEecCC
Q psy8895         433 ---NGTMCFWDWRT  443 (479)
Q Consensus       433 ---dg~i~lWd~~~  443 (479)
                         ++..++|.+..
T Consensus       378 ~~~~~~~~l~~~~~  391 (719)
T 1z68_A          378 EEYPGRRNIYRISI  391 (719)
T ss_dssp             GGCTTCBEEEEEEC
T ss_pred             CCCCceEEEEEEeC
Confidence               48899998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.69  E-value=4.7e-14  Score=135.35  Aligned_cols=180  Identities=9%  Similarity=0.107  Sum_probs=114.6

Q ss_pred             CccEEEEEEcCCCcEEEEEe-CCCeEEEEECCCCc-------e------EEEEecCCcCEEEEEEcCCCCEEEEEE-CCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGS-ADKIIKVWDLATGK-------L------KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDR  283 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs-~d~~i~iWd~~~~~-------~------~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~  283 (479)
                      ...+.+++|+|+|++++.++ .++.|.+|++....       .      ......+......++|+|++++++.++ .++
T Consensus       154 ~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          154 MPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             SCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            34478899999999765555 58899999887543       1      111223345678999999999887776 689


Q ss_pred             cEEEEECCCCCccc--CC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         284 TVKCWDLEYNKAPV--QP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       284 ~i~~wd~~~~~~~~--~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      .|.+||+..+....  .. ...........++|+|++++++++..+                       .+++|.+|++.
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~-----------------------~~~~i~v~~~~  290 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL-----------------------KADGVAIFKVD  290 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS-----------------------SSCEEEEEEEC
T ss_pred             eEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC-----------------------CCCEEEEEEEc
Confidence            99999987543211  00 111122446789999999887554432                       03455555553


Q ss_pred             --CCe--eEEEEccCCCceEEEEEeCCCcEEEEEc-CC-cEEEE--eCCCCeEEeeec-CCcceEEEEEEc
Q psy8895         361 --AGK--SLCTLTNHKKSVRSVALHPTLYMFASAS-PD-NIKQW--KCPEGKFIQNLP-GHNAIINSICVN  422 (479)
Q Consensus       361 --~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d-~i~~w--~~~~~~~~~~~~-~h~~~v~~l~~~  422 (479)
                        +++  .+..+.. ...++.++|+|++++++.++ .+ .+.+|  |..++++..... .+...+.|+.|.
T Consensus       291 ~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          291 ETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             TTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             CCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence              222  3344443 45678999999998776665 33 58885  555777654432 233457777765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.69  E-value=1.7e-14  Score=138.49  Aligned_cols=198  Identities=10%  Similarity=0.098  Sum_probs=136.0

Q ss_pred             EEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEE-EecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCC-CCcccC
Q psy8895         224 CVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEY-NKAPVQ  298 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~-~~~~~~  298 (479)
                      .++|+|||++|+.++.  +++|.+||+.+++.+.. +...  ....+.+.|++ ..+++.+.|+.+.+|+.+. ++....
T Consensus       112 ~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~  189 (361)
T 2oiz_A          112 LFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQ  189 (361)
T ss_dssp             GEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEE
T ss_pred             eEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeee
Confidence            3678999999988874  58999999999988776 4422  23345677765 5677888999999998864 221100


Q ss_pred             C---CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCCeEE
Q psy8895         299 P---GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESHPVI  346 (479)
Q Consensus       299 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~l~  346 (479)
                      .   ...........+.+.+++..++..+.++.+.+++.....                             .++...++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~ly  269 (361)
T 2oiz_A          190 SRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMY  269 (361)
T ss_dssp             EECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEE
T ss_pred             ccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEE
Confidence            0   001111111112224455566666667777777753210                             11223344


Q ss_pred             EEeC-----------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC--eEEeeecCCc
Q psy8895         347 TGSH-----------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG--KFIQNLPGHN  413 (479)
Q Consensus       347 sgs~-----------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~--~~~~~~~~h~  413 (479)
                      .+..           +++|.+||+.+++.+.++..+.  ...++|+|++++++++..+.|.+||..++  +.+.++..+.
T Consensus       270 v~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G  347 (361)
T 2oiz_A          270 VFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAA  347 (361)
T ss_dssp             EEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSC
T ss_pred             EEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCC
Confidence            4322           3489999999999999998776  89999999998888777777999999999  9999987777


Q ss_pred             ceEEEEEEcCCC
Q psy8895         414 AIINSICVNNEG  425 (479)
Q Consensus       414 ~~v~~l~~~~~~  425 (479)
                      .....++++|+|
T Consensus       348 ~~P~~~~~~p~G  359 (361)
T 2oiz_A          348 EASLQVQFHPVG  359 (361)
T ss_dssp             SSEEEEEECCCS
T ss_pred             CCcEEEEecCCC
Confidence            778888999886

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.68  E-value=1.2e-14  Score=137.80  Aligned_cols=209  Identities=16%  Similarity=0.300  Sum_probs=142.1

Q ss_pred             EEEEEeCCCeEEEEECC-CCce-EEEEecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEECC--CCCcccCCCCCCCCCC
Q psy8895         233 WFATGSADKIIKVWDLA-TGKL-KLSLTGHVGSVRGLTVSPRHPYLFSCGDD-RTVKCWDLE--YNKAPVQPGSMDSESG  307 (479)
Q Consensus       233 ~l~sgs~d~~i~iWd~~-~~~~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~~wd~~--~~~~~~~~~~~~~~~~  307 (479)
                      .+++++.|+.|++||+. ++.. ......|...+.+++|+|+++++++++.+ +.|++|++.  ++...... .......
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~   85 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-ESALPGS   85 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE-EEECSSC
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc-ccccCCC
Confidence            45555789999999995 3432 12223466788999999999998888876 999999987  33321110 1111236


Q ss_pred             eEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCC-------------------CCCCCeEEEEe-CCCcEEEEECCC-CeeE
Q psy8895         308 IFSMTFDNSGSRLITTEA-DKTVKLYKEDDSA-------------------TEESHPVITGS-HDCTIRLWDLAA-GKSL  365 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~-------------------~~~~~~l~sgs-~d~~v~iwd~~~-~~~~  365 (479)
                      +..++|+|+++.+++++. ++.+.+|+.....                   .+++..+++++ .|+.|++||+.+ ++..
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  165 (343)
T 1ri6_A           86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV  165 (343)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred             CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence            778999999998876664 7889999873110                   12344566666 899999999987 5432


Q ss_pred             E----EEcc-CCCceEEEEEeCCCcEE-EEEcCC-cEEEEeCC--CCeE--Eeee---c-CC--cceEEEEEEcCCC-EE
Q psy8895         366 C----TLTN-HKKSVRSVALHPTLYMF-ASASPD-NIKQWKCP--EGKF--IQNL---P-GH--NAIINSICVNNEG-VL  427 (479)
Q Consensus       366 ~----~~~~-h~~~v~~i~~~~~~~~l-~s~s~d-~i~~w~~~--~~~~--~~~~---~-~h--~~~v~~l~~~~~~-~l  427 (479)
                      .    .+.. ....+..++|+|++..+ +++..+ .+.+|+..  +++.  ....   . ++  ...+..++++|++ .|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l  245 (343)
T 1ri6_A          166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL  245 (343)
T ss_dssp             EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred             eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence            2    2222 33478899999999855 444344 59999984  3433  2222   2 21  2457789999998 55


Q ss_pred             E-EEeCCCcEEEEecC
Q psy8895         428 V-SGADNGTMCFWDWR  442 (479)
Q Consensus       428 ~-sg~~dg~i~lWd~~  442 (479)
                      + ++..|+.|.+||+.
T Consensus       246 ~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          246 YACDRTASLITVFSVS  261 (343)
T ss_dssp             EEEETTTTEEEEEEEC
T ss_pred             EEEecCCCEEEEEEEc
Confidence            5 66689999999998

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.68  E-value=8.6e-14  Score=133.53  Aligned_cols=227  Identities=10%  Similarity=0.134  Sum_probs=154.5

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCC----CeEEEEECCC--Cce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSAD----KIIKVWDLAT--GKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCW  288 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d----~~i~iWd~~~--~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~w  288 (479)
                      +......++|+|+|++|++++.+    +.|.+|++..  ++.  +.....+......+++  +++++++++ .++.+.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            56667789999999999999886    7999998865  443  3334445556777787  777777766 67899999


Q ss_pred             ECCCCCcccCCC------------CCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCC-----------------
Q psy8895         289 DLEYNKAPVQPG------------SMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSA-----------------  338 (479)
Q Consensus       289 d~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~-----------------  338 (479)
                      ++..........            .......+.++.|+|++++++++. .++.+.+|+.+...                 
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            997543221110            001123467899999999766555 57899999765321                 


Q ss_pred             -------------CCCCCeEEEEe-CCCcEEEEECCCCee--EEEEc---cCCCceEEEEEeCCCcEEEE-EcC--CcEE
Q psy8895         339 -------------TEESHPVITGS-HDCTIRLWDLAAGKS--LCTLT---NHKKSVRSVALHPTLYMFAS-ASP--DNIK  396 (479)
Q Consensus       339 -------------~~~~~~l~sgs-~d~~v~iwd~~~~~~--~~~~~---~h~~~v~~i~~~~~~~~l~s-~s~--d~i~  396 (479)
                                   .+++..+++++ .+++|.+||+.+++.  +..+.   .+......++|+|++++++. ...  +.+.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence                         01234455555 689999999987654  33332   23345789999999987644 444  3599


Q ss_pred             EEeCC--CCe--EEeeecCCcceEEEEEEcCCC-EEEEEe-CCCcEEEEe--cCCCeEE
Q psy8895         397 QWKCP--EGK--FIQNLPGHNAIINSICVNNEG-VLVSGA-DNGTMCFWD--WRTGYNF  447 (479)
Q Consensus       397 ~w~~~--~~~--~~~~~~~h~~~v~~l~~~~~~-~l~sg~-~dg~i~lWd--~~~~~~~  447 (479)
                      +|++.  +++  .+..+.. ...+..++|+|++ +|++++ .++.|.+|+  .++|+..
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            99985  454  3444544 4567789999999 676666 679999965  4566543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=7.7e-14  Score=132.15  Aligned_cols=224  Identities=13%  Similarity=0.169  Sum_probs=169.9

Q ss_pred             CccEEEEEEcCCCcEEEEEeCC------------------------CeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSAD------------------------KIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRH  273 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d------------------------~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~  273 (479)
                      .+.+.+++++|+|+++++.+.+                        +.|.+||..+++....+. ++-.....+++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4678999999999999998887                        479999999998876654 344578999999999


Q ss_pred             CEEEEEECCCcEEEEECCCCC-cccCCCC-------CCCCCCeEEEEEeC-CCCEEEEEe-CCCeEEEEeCCCCC-----
Q psy8895         274 PYLFSCGDDRTVKCWDLEYNK-APVQPGS-------MDSESGIFSMTFDN-SGSRLITTE-ADKTVKLYKEDDSA-----  338 (479)
Q Consensus       274 ~~l~s~~~d~~i~~wd~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~~~~~~~~~-----  338 (479)
                      .++++...++.|++||..... .......       .........++++| ++..+++.+ .++.|.+|+.+...     
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~  182 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWG  182 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCEEEEEC
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEec
Confidence            988888888999999986432 1111110       12233578999999 778777776 68899999854210     


Q ss_pred             ---------------------CCC-CCeEEEEeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCcEEEEEc---
Q psy8895         339 ---------------------TEE-SHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMFASAS---  391 (479)
Q Consensus       339 ---------------------~~~-~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s---  391 (479)
                                           .++ ...+++...++.|++||..+++.+.++.  .+...+.+++++| +..++..+   
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~  261 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKPY  261 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCCC
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCEE
Confidence                                 012 3455666778899999999888888874  4556789999999 44444432   


Q ss_pred             ----CC-cEEEEeCCCCeEEeee---cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCC
Q psy8895         392 ----PD-NIKQWKCPEGKFIQNL---PGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       392 ----~d-~i~~w~~~~~~~~~~~---~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                          .+ .+.+|+..+++.+..+   .++...+..+++++++ ++++...+++|++|++..
T Consensus       262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                22 5899999999998887   3677789999999999 778888899999999753

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.65  E-value=9.8e-15  Score=138.17  Aligned_cols=215  Identities=11%  Similarity=0.108  Sum_probs=154.3

Q ss_pred             cEEEEEeCCCeEEEEECCCCceEEEEecCCc--CEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCCCC---CC
Q psy8895         232 EWFATGSADKIIKVWDLATGKLKLSLTGHVG--SVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSMD---SE  305 (479)
Q Consensus       232 ~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~--~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~~---~~  305 (479)
                      +++++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.++ +++.++.|.+||+.+.+.........   ..
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5789999999999999999988877763322  478899999998664 55667899999998765432211100   01


Q ss_pred             CCeEEEEEeCCCCEEEEEe------------CCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEE
Q psy8895         306 SGIFSMTFDNSGSRLITTE------------ADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLW  357 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~------------~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iw  357 (479)
                      ..+..+.|+|+++.++++.            .++.|.+|+.....                .++...++++  ++.|++|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence            1455789999999988886            57999999976432                1233446666  6899999


Q ss_pred             ECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcC-C------------------------cEEEEeCCCCeEE-eeecC
Q psy8895         358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASP-D------------------------NIKQWKCPEGKFI-QNLPG  411 (479)
Q Consensus       358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d------------------------~i~~w~~~~~~~~-~~~~~  411 (479)
                      |+.+++.+..+..+... ..+.|+|++..+..... +                        .+.+||..+++.. ..+..
T Consensus       160 d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  238 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI  238 (337)
T ss_dssp             ETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE
T ss_pred             ECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCC
Confidence            99999888777654311 12377888765543332 2                        2578999888764 23445


Q ss_pred             CcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         412 HNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       412 h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +...+..++++|++ +++++  ++.|.+||+++++.++.+.
T Consensus       239 ~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  277 (337)
T 1pby_B          239 MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP  277 (337)
T ss_dssp             CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec
Confidence            66678899999999 67766  7999999999998877664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.65  E-value=1.3e-14  Score=152.33  Aligned_cols=222  Identities=12%  Similarity=0.077  Sum_probs=157.4

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC-----C
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY-----N  293 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~-----~  293 (479)
                      ...|.+++|+|| +.++.+. ++.|++||+.+++.. .+..+...+.+++|+|||+.++++ .|+.|++||+.+     +
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            356899999999 5555543 599999999988664 444566778889999999999885 679999999987     5


Q ss_pred             CcccCCCCCCCC-------------CCeEEEEEeCCCCEEEEEe---------------------------------CCC
Q psy8895         294 KAPVQPGSMDSE-------------SGIFSMTFDNSGSRLITTE---------------------------------ADK  327 (479)
Q Consensus       294 ~~~~~~~~~~~~-------------~~i~~~~~~~~~~~l~~~~---------------------------------~d~  327 (479)
                      +...... ....             ..+..+.|+|+++.++.++                                 .+.
T Consensus       157 ~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          157 RAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             CcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            4332111 1111             1246899999999999887                                 446


Q ss_pred             eEEEEeCCCCC-------------------CCCCCeEEEEeCCC-----cEEEEECCCCeeEEEEc--cCCC---ceEEE
Q psy8895         328 TVKLYKEDDSA-------------------TEESHPVITGSHDC-----TIRLWDLAAGKSLCTLT--NHKK---SVRSV  378 (479)
Q Consensus       328 ~i~~~~~~~~~-------------------~~~~~~l~sgs~d~-----~v~iwd~~~~~~~~~~~--~h~~---~v~~i  378 (479)
                      .|.+|+.....                   .+++..+++++.|+     .|++||+.+++....+.  .+..   .+..+
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence            78889875431                   12345677777665     89999999984433332  2222   24678


Q ss_pred             EEeC--CCcEEEEEcCCc-EEEEeCC-CCeEEeeecCCcceEEE-EEEcCCC-EEE-EEeCCC----cEEEEecCCCe
Q psy8895         379 ALHP--TLYMFASASPDN-IKQWKCP-EGKFIQNLPGHNAIINS-ICVNNEG-VLV-SGADNG----TMCFWDWRTGY  445 (479)
Q Consensus       379 ~~~~--~~~~l~s~s~d~-i~~w~~~-~~~~~~~~~~h~~~v~~-l~~~~~~-~l~-sg~~dg----~i~lWd~~~~~  445 (479)
                      +|+|  ++.++++++.+. +.+|... ++..+..+..|...+.. ++++|++ .|+ +++.++    .|..||..++.
T Consensus       316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             EECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             eeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            9999  999888887664 7888765 66777788888777776 7999998 554 555555    66677777764

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.65  E-value=2.4e-14  Score=136.56  Aligned_cols=199  Identities=13%  Similarity=0.116  Sum_probs=130.0

Q ss_pred             CCccEEEEEEcCCCcEEEEEeC---CCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSA---DKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLE  291 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~---d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~  291 (479)
                      +......++|+|+|+ |++++.   ++.|.+||+.+++.  +..+..+...+..++|+|++++|++++ .++.+++||+.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence            445667899999999 555443   68999999987753  344455667788999999999888887 77999999986


Q ss_pred             CCCcc---cCCCCC-------CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC-
Q psy8895         292 YNKAP---VQPGSM-------DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA-  360 (479)
Q Consensus       292 ~~~~~---~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~-  360 (479)
                      .....   ......       .....+.+++|+|+++.+++...                         ++.|++||+. 
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-------------------------~~~v~~~~~~~  171 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-------------------------SDKVYVYNVSD  171 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-------------------------TTEEEEEEECT
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-------------------------CCEEEEEEECC
Confidence            32111   100000       01234778889998884333333                         4455555555 


Q ss_pred             CCee--EEEEccC-CCceEEEEEeCCCcEEEE-EcCC-cEEEEeCC--CCeE--EeeecCCc------ceEEEEEEcCCC
Q psy8895         361 AGKS--LCTLTNH-KKSVRSVALHPTLYMFAS-ASPD-NIKQWKCP--EGKF--IQNLPGHN------AIINSICVNNEG  425 (479)
Q Consensus       361 ~~~~--~~~~~~h-~~~v~~i~~~~~~~~l~s-~s~d-~i~~w~~~--~~~~--~~~~~~h~------~~v~~l~~~~~~  425 (479)
                      .++.  +..+..+ ......++|+|+++.++. ...+ .+.+|+..  +++.  +..+....      ..+..++++||+
T Consensus       172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG  251 (347)
T 3hfq_A          172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG  251 (347)
T ss_dssp             TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred             CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence            2322  1222222 235788999999985444 4444 58999876  3553  22332222      458899999999


Q ss_pred             -EE-EEEeCCCcEEEEecC
Q psy8895         426 -VL-VSGADNGTMCFWDWR  442 (479)
Q Consensus       426 -~l-~sg~~dg~i~lWd~~  442 (479)
                       +| ++...++.|.+||+.
T Consensus       252 ~~l~v~~~~~~~v~v~~~~  270 (347)
T 3hfq_A          252 HFLYVSNRGYNTLAVFAVT  270 (347)
T ss_dssp             CEEEEEEETTTEEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEEEC
Confidence             55 666779999999997

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.64  E-value=3.6e-16  Score=164.42  Aligned_cols=217  Identities=11%  Similarity=0.091  Sum_probs=157.7

Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCc---CEEEEEEcCCCCEEEEEEC---------CCcEEEEECC
Q psy8895         224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG---SVRGLTVSPRHPYLFSCGD---------DRTVKCWDLE  291 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~~l~s~~~---------d~~i~~wd~~  291 (479)
                      +++|+|+|+++++ +.|+.|++||+.+++....+..|..   .+.+++|||||++|++++.         |+.|++||++
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            5689999976555 4699999999999988777766644   4889999999999998876         7899999998


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------------------
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------------------------  338 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------------------------  338 (479)
                      +++.....   .....+..++|+|+|+.++.+. ++.|++|+.....                                 
T Consensus        99 ~g~~~~~~---~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           99 NGEFVRGN---ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTEECCSS---CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCccccce---ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            76542100   1123577899999999998875 7899999874321                                 


Q ss_pred             --CCCCCeEEEEeCCC----------------------------------cEEEEECCCCeeE--------EEEccCCCc
Q psy8895         339 --TEESHPVITGSHDC----------------------------------TIRLWDLAAGKSL--------CTLTNHKKS  374 (479)
Q Consensus       339 --~~~~~~l~sgs~d~----------------------------------~v~iwd~~~~~~~--------~~~~~h~~~  374 (479)
                        ++++..|++++.|.                                  +|++||+.+++..        ..+.+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence              12345678777552                                  7889999987642        123467888


Q ss_pred             eEEEEEeCCCcEEEEEcCC-----cEEEEe----CCCCeEEeee----cCCcceEE-----EEEEcCCC-EEE--EEeCC
Q psy8895         375 VRSVALHPTLYMFASASPD-----NIKQWK----CPEGKFIQNL----PGHNAIIN-----SICVNNEG-VLV--SGADN  433 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d-----~i~~w~----~~~~~~~~~~----~~h~~~v~-----~l~~~~~~-~l~--sg~~d  433 (479)
                      +.+++|+||++++++..+.     .|.+||    ..+++....+    .+|.+.+.     .+.|+||+ .|+  +...+
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  334 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD  334 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence            9999999998877764322     278899    7777766555    46777776     78999998 443  45456


Q ss_pred             Cc--EEEEecCCCe
Q psy8895         434 GT--MCFWDWRTGY  445 (479)
Q Consensus       434 g~--i~lWd~~~~~  445 (479)
                      |.  |.+||+.++.
T Consensus       335 g~~~l~~~~~~~~~  348 (719)
T 1z68_A          335 GYKHIHYIKDTVEN  348 (719)
T ss_dssp             SCEEEEEESSCSTT
T ss_pred             CceEEEEEECCCCc
Confidence            64  6666766654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=2.5e-13  Score=125.69  Aligned_cols=224  Identities=12%  Similarity=0.221  Sum_probs=160.9

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe------cCCcCEEEEEE-cCCCCEEEEEEC-CCcEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT------GHVGSVRGLTV-SPRHPYLFSCGD-DRTVKCW  288 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~------~h~~~v~~v~~-~~~~~~l~s~~~-d~~i~~w  288 (479)
                      +|.....+++++++|+++++.+.++.|.+||.. ++....+.      ++...+..+++ .+++.++++... ++.|.+|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            456678899999999999998899999999987 55555553      23457889999 577766666533 8899999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeC
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSH  350 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~  350 (479)
                      |.. ++...... ......+..+++++++..+++...++.|.+|+.....                  ..+...+++.+.
T Consensus       106 d~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~  183 (286)
T 1q7f_A          106 NQY-GQFVRKFG-ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR  183 (286)
T ss_dssp             CTT-SCEEEEEC-TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred             CCC-CcEEEEec-CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence            943 33222111 1223467899999999888877788899999854321                  012334556667


Q ss_pred             CCcEEEEECCCCeeEEEEccC--CCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeecCCc--ceEEEEEEcCC
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNH--KKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLPGHN--AIINSICVNNE  424 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~--~~v~~l~~~~~  424 (479)
                      ++.|++||.. ++.+.++..+  ...+..+++++++.++++...+  .|.+|+. +++.+..+..+.  ..+..++++++
T Consensus       184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~  261 (286)
T 1q7f_A          184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  261 (286)
T ss_dssp             GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence            8999999974 5566666443  3578999999999999888754  6999995 566666665443  34778999999


Q ss_pred             CEEEEEeCCCcEEEEecCCCe
Q psy8895         425 GVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       425 ~~l~sg~~dg~i~lWd~~~~~  445 (479)
                      +.|+.++.|++|++|++....
T Consensus       262 g~l~vs~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          262 GSVVLASKDYRLYIYRYVQLA  282 (286)
T ss_dssp             TEEEEEETTTEEEEEECSCCC
T ss_pred             CcEEEECCCCeEEEEEccccc
Confidence            954444679999999986543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.62  E-value=4.9e-14  Score=136.45  Aligned_cols=214  Identities=10%  Similarity=-0.002  Sum_probs=138.7

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEE--EcCCCCEEEEE----------------------E
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT--VSPRHPYLFSC----------------------G  280 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~--~~~~~~~l~s~----------------------~  280 (479)
                      ..|+|||+.|+.++.++.|.+||+.+++....+..+...+....  +++++..++..                      +
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            36899999999999999999999999988776666665554433  48999988743                      2


Q ss_pred             CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCC------CeEEEEeCCCCC---------------
Q psy8895         281 DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEAD------KTVKLYKEDDSA---------------  338 (479)
Q Consensus       281 ~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~---------------  338 (479)
                      .+..|.+||+.+++.....   .....+..+.|+| +++.++.....      ..|.+++.....               
T Consensus       166 ~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~  242 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVIL---QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTH  242 (388)
T ss_dssp             CCEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEE
T ss_pred             CcceEEEEECCCCceEEee---cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCccccc
Confidence            3467999999876533221   2234578899999 99988776653      367777654321               


Q ss_pred             ---CCCCCeEEEEeC-CC----cEEEEECCCCee--EEEEccCCCc---eEEEEEeCCCcEEEEE---------c-CCcE
Q psy8895         339 ---TEESHPVITGSH-DC----TIRLWDLAAGKS--LCTLTNHKKS---VRSVALHPTLYMFASA---------S-PDNI  395 (479)
Q Consensus       339 ---~~~~~~l~sgs~-d~----~v~iwd~~~~~~--~~~~~~h~~~---v~~i~~~~~~~~l~s~---------s-~d~i  395 (479)
                         .+++..|+..+. ++    .|++||+.+++.  +..+.++...   ...+.|+|++..++..         . ...|
T Consensus       243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i  322 (388)
T 3pe7_A          243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL  322 (388)
T ss_dssp             EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred             ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence               122333443332 22    399999998864  3333331100   1123689998766643         2 2259


Q ss_pred             EEEeCCCCeEEeeecCCcc-----------eEEEEEEcCCC-EEEEE-eCCCcEEEEecC
Q psy8895         396 KQWKCPEGKFIQNLPGHNA-----------IINSICVNNEG-VLVSG-ADNGTMCFWDWR  442 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~-~l~sg-~~dg~i~lWd~~  442 (479)
                      .+||..+++. ..+..|..           .+..++|+||+ .|+.. ..+|...||.+.
T Consensus       323 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          323 YVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             EEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             EEEeccCCce-EEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence            9999988765 34444444           46778999999 56544 457877777654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.62  E-value=1.9e-13  Score=142.29  Aligned_cols=203  Identities=13%  Similarity=0.021  Sum_probs=135.8

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCC----------CeEEEEECCC------CceEEEEe-cCCcCEEEEEEcCCCCEEEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSAD----------KIIKVWDLAT------GKLKLSLT-GHVGSVRGLTVSPRHPYLFSCG  280 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d----------~~i~iWd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~  280 (479)
                      |...+.+++|+|||+.|++++.|          ..|.+||+.+      +.. ..+. .+...+..++|+|||++|+.++
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~  206 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLA  206 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEE
Confidence            56678899999999999998877          5899999988      554 3455 5566788899999999998877


Q ss_pred             CC--------CcEEEEECC-CCC--cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEe
Q psy8895         281 DD--------RTVKCWDLE-YNK--APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGS  349 (479)
Q Consensus       281 ~d--------~~i~~wd~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs  349 (479)
                      .+        ..|++||++ ++.  ..... ...+...+..+.|+|+++.++++..++..                    
T Consensus       207 ~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-~~~~~~~~~~~~~spdg~l~~~~~~~~~~--------------------  265 (662)
T 3azo_A          207 WDHPRMPWEGTELKTARVTEDGRFADTRTL-LGGPEEAIAQAEWAPDGSLIVATDRTGWW--------------------  265 (662)
T ss_dssp             ECTTCCTTTCEEEEEEEECTTSCEEEEEEE-EEETTBCEEEEEECTTSCEEEEECTTSSC--------------------
T ss_pred             CCCCCCCCCCcEEEEEEECCCCcccccEEe-CCCCCceEcceEECCCCeEEEEECCCCCe--------------------
Confidence            55        379999997 341  11111 11124567889999998865555544432                    


Q ss_pred             CCCcEEEEECCCCeeEEEEccCCCc--------eEEEEEeCCCcEEEEEcCCcEEEE--eCCCCeEEeeecCCcceEEEE
Q psy8895         350 HDCTIRLWDLAAGKSLCTLTNHKKS--------VRSVALHPTLYMFASASPDNIKQW--KCPEGKFIQNLPGHNAIINSI  419 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~~~~~~~h~~~--------v~~i~~~~~~~~l~s~s~d~i~~w--~~~~~~~~~~~~~h~~~v~~l  419 (479)
                         .|.+||+.+++.......+...        +..++|+|++.++++++.+.+.+|  |..+++ +..+..|...+..+
T Consensus       266 ---~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~  341 (662)
T 3azo_A          266 ---NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAAT  341 (662)
T ss_dssp             ---EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEE
T ss_pred             ---EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEE
Confidence               3444444444332222222211        567899999998888877447777  655555 67788888888877


Q ss_pred             -EEcCCC-EEEEEeCCCc--EEEEecCCCeE
Q psy8895         420 -CVNNEG-VLVSGADNGT--MCFWDWRTGYN  446 (479)
Q Consensus       420 -~~~~~~-~l~sg~~dg~--i~lWd~~~~~~  446 (479)
                       .++++. .+++++.+..  |.+||+.+++.
T Consensus       342 ~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          342 LTVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence             666666 4555666654  44556667754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=5.1e-13  Score=128.11  Aligned_cols=229  Identities=10%  Similarity=0.100  Sum_probs=154.9

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC------CcCEEEEEEcCCCCEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH------VGSVRGLTVSPRHPYL  276 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h------~~~v~~v~~~~~~~~l  276 (479)
                      ..+..+..+  .++|+|||++++.++          .++.|.+||..+++.+..+...      ......++++|||++|
T Consensus        45 ~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l  122 (361)
T 2oiz_A           45 GMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI  122 (361)
T ss_dssp             EEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred             EEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence            344445455  899999999998886          3678999999999888776532      2345678999999999


Q ss_pred             EEEEC--CCcEEEEECCCCCcccC-CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCC-C-------------
Q psy8895         277 FSCGD--DRTVKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDS-A-------------  338 (479)
Q Consensus       277 ~s~~~--d~~i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~-~-------------  338 (479)
                      +++..  +++|.+||+++.+.... ..   . .....+.+.|.+ ..+++.+.|+.+.+++.... .             
T Consensus       123 ~v~n~~~~~~v~v~d~~~~~~~~~~i~---~-~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~  198 (361)
T 2oiz_A          123 VLQNASPATSIGIVDVAKGDYVEDVTA---A-AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV  198 (361)
T ss_dssp             EEEEESSSEEEEEEETTTTEEEEEEGG---G-TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred             EEECCCCCCeEEEEECCCCcEEEEEec---C-CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence            88763  68999999987654322 11   1 112223344443 45566666666666654321 0             


Q ss_pred             ---------CCCCCeEEEEeCCCcEEEEECCCCee--EEEEccCC----------CceEEEEEeCCCcE-EEEEc-----
Q psy8895         339 ---------TEESHPVITGSHDCTIRLWDLAAGKS--LCTLTNHK----------KSVRSVALHPTLYM-FASAS-----  391 (479)
Q Consensus       339 ---------~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~h~----------~~v~~i~~~~~~~~-l~s~s-----  391 (479)
                               ......++..+.+++|.++|+.....  ...+.-..          .....++|+|++.. +++.+     
T Consensus       199 ~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~  278 (361)
T 2oiz_A          199 KDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE  278 (361)
T ss_dssp             TTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred             CCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence                     01123455667889999999875432  22221100          11123789998554 44433     


Q ss_pred             ------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC--eEEEEE
Q psy8895         392 ------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG--YNFQRL  450 (479)
Q Consensus       392 ------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~--~~~~~~  450 (479)
                            .+.+.+||..+++.+.+++.+.  +..++++||+ +|++++. ++|.+||.+++  +.++++
T Consensus       279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          279 GTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             ccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence                  2259999999999999998887  8999999999 7777776 99999999999  877654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.60  E-value=4.9e-14  Score=134.08  Aligned_cols=209  Identities=13%  Similarity=0.136  Sum_probs=144.5

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCCC
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      +++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+++++........
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~   84 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   84 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence            4567888999999999999999999998888776553 2567899999998665 5557899999999876543221100


Q ss_pred             CC----CCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe---eEEEEccCCCce
Q psy8895         303 DS----ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK---SLCTLTNHKKSV  375 (479)
Q Consensus       303 ~~----~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~---~~~~~~~h~~~v  375 (479)
                      ..    ...+..+.|+|+++.++++..+...  ..       .    .-+..++.|.+||+.+++   .+..+.. ...+
T Consensus        85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~-------~----~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~  150 (349)
T 1jmx_B           85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQR--LN-------D----HYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQV  150 (349)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEE--CS-------S----CEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSC
T ss_pred             cccccccccccceEECCCCCEEEEEcccccc--cc-------c----ccccCCCeEEEEECCCccccceeeeccC-CCcc
Confidence            00    1225678899999888876643110  00       0    012234688899988743   3334433 3468


Q ss_pred             EEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCc------------------------------------------
Q psy8895         376 RSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHN------------------------------------------  413 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~------------------------------------------  413 (479)
                      .+++|+|++.+++ ++. .+.+||..+++....+..+.                                          
T Consensus       151 ~~~~~s~dg~l~~-~~~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  228 (349)
T 1jmx_B          151 YLMRAADDGSLYV-AGP-DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT  228 (349)
T ss_dssp             CCEEECTTSCEEE-ESS-SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CC
T ss_pred             cceeECCCCcEEE-ccC-cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccc
Confidence            8999999999555 433 39999999888776654331                                          


Q ss_pred             --------------------------ceEEEEEEcC-CC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         414 --------------------------AIINSICVNN-EG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       414 --------------------------~~v~~l~~~~-~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                                                ..+..++++| ++ +++++  ++.|.+||+++++.++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~  292 (349)
T 1jmx_B          229 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN  292 (349)
T ss_dssp             CEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE
T ss_pred             cccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc
Confidence                                      1234566778 88 66666  8899999999998877665

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.55  E-value=7.4e-12  Score=115.76  Aligned_cols=180  Identities=13%  Similarity=0.171  Sum_probs=127.0

Q ss_pred             cEEEEEE-cCCCcEEEEEeC-CCeEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         221 WVRCVAV-EPGNEWFATGSA-DKIIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       221 ~v~~~~~-~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ...++++ .++++++++... ++.|.+|| .+++.+..+.. +...+..+++++++.++++...++.|.+||.... ...
T Consensus        78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~  155 (286)
T 1q7f_A           78 YPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLH  155 (286)
T ss_dssp             SEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE
T ss_pred             CceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEE
Confidence            4567788 467777777643 78999999 56766666643 3457899999999998887778899999996532 221


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeCCC-cEEEEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSHDC-TIRLWD  358 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~d~-~v~iwd  358 (479)
                      ..........+..+++++++..+++...++.|.+|+.....                  ..+...+++...++ .|++||
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence            11111223457899999999877777788999999864321                  01234556666675 999999


Q ss_pred             CCCCeeEEEEccCC--CceEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895         359 LAAGKSLCTLTNHK--KSVRSVALHPTLYMFASASPDNIKQWKCPEG  403 (479)
Q Consensus       359 ~~~~~~~~~~~~h~--~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~  403 (479)
                      . .++.+..+..+.  ..+.+++++|++.++++..++.|.+|+....
T Consensus       236 ~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          236 Q-DGQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQL  281 (286)
T ss_dssp             T-TSCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             C-CCCEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEcccc
Confidence            5 466666665443  3478999999999988866556999987543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.3e-12  Score=135.18  Aligned_cols=228  Identities=10%  Similarity=0.052  Sum_probs=160.9

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCC-----eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-------
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADK-----IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT-------  284 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~-----~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-------  284 (479)
                      +|...+..++|+|||++|+.++.++     .|++||+.+++.......+ ..+..++|+||++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            4555788999999999988766543     8999999999876532222 23567899999999998887765       


Q ss_pred             ---------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeC-----CCeEEEEeCCC------CC--C-
Q psy8895         285 ---------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEA-----DKTVKLYKEDD------SA--T-  339 (479)
Q Consensus       285 ---------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~~~~~~------~~--~-  339 (479)
                               |++|++.+.+..  .......+...+..+.|+|++++++..+.     +..+.+++...      ..  . 
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999776532  11111122345778999999999887764     56788898754      21  1 


Q ss_pred             --------------CCCCeEEEEeC-C---CcEEEEECCCCe--eEEEEccCCC--ceEEEEEeCCCcEEEEEcCCc---
Q psy8895         340 --------------EESHPVITGSH-D---CTIRLWDLAAGK--SLCTLTNHKK--SVRSVALHPTLYMFASASPDN---  394 (479)
Q Consensus       340 --------------~~~~~l~sgs~-d---~~v~iwd~~~~~--~~~~~~~h~~--~v~~i~~~~~~~~l~s~s~d~---  394 (479)
                                    .++..++..+. +   ..|.+||+.++.  ....+..|..  .+..+++++++.++++...+.   
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence                          01233433333 2   369999998764  2344544543  688899998888888877663   


Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY  445 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~  445 (479)
                      +.+|+..+++.+..+..+.+.+..+.+++++ .++ +.+   ..++|.+||+.+|+
T Consensus       361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7778887888778888888889999999887 443 333   35789999999887

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.54  E-value=1.3e-11  Score=116.83  Aligned_cols=164  Identities=11%  Similarity=0.203  Sum_probs=118.5

Q ss_pred             CCccEEEEEEcC-CCcEEEEEe-CCCeEEEEECCCCceEEEEec----------CCcCEEEEEEcCC-CCEEEEEECCCc
Q psy8895         218 HLGWVRCVAVEP-GNEWFATGS-ADKIIKVWDLATGKLKLSLTG----------HVGSVRGLTVSPR-HPYLFSCGDDRT  284 (479)
Q Consensus       218 h~~~v~~~~~~~-~g~~l~sgs-~d~~i~iWd~~~~~~~~~~~~----------h~~~v~~v~~~~~-~~~l~s~~~d~~  284 (479)
                      +......++++| +|.++++.+ .++.|++|| .+++.+..+..          +-.....++++|+ +.++++...++.
T Consensus       141 ~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~  219 (329)
T 3fvz_A          141 HFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR  219 (329)
T ss_dssp             CCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE
Confidence            344568899999 888888887 689999999 56777666642          2234789999998 767777778899


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      |++||.++++.............+..+.+.| +..+...+   .               ..++.+.+.+|++||..+++.
T Consensus       220 I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g---~---------------~~v~~~~~~~v~~~~~~~g~~  280 (329)
T 3fvz_A          220 IQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG---K---------------PYFGDQEPVQGFVMNFSSGEI  280 (329)
T ss_dssp             EEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC---C---------------CCTTCSCCCCEEEEETTTCCE
T ss_pred             EEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC---C---------------EEeccCCCcEEEEEEcCCCeE
Confidence            9999997555433322223345678888888 33332211   1               123344567899999999998


Q ss_pred             EEEEc---cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCC
Q psy8895         365 LCTLT---NHKKSVRSVALHPTLYMFASASPD-NIKQWKCP  401 (479)
Q Consensus       365 ~~~~~---~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~  401 (479)
                      +.++.   .+......|+++|++.++++...+ .|.+|+..
T Consensus       281 ~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          281 IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            88873   566778999999999888888766 59999863

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.49  E-value=1.5e-12  Score=125.14  Aligned_cols=203  Identities=11%  Similarity=0.137  Sum_probs=131.8

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECC-CCceEEEEecC-CcCEEEEEEcCCCCE--EEEEE-------------CC
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLA-TGKLKLSLTGH-VGSVRGLTVSPRHPY--LFSCG-------------DD  282 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~-~~~~~~~~~~h-~~~v~~v~~~~~~~~--l~s~~-------------~d  282 (479)
                      ..+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+|++++  ++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            456789999999999999988 99999997 77664332210 123456889999984  44543             68


Q ss_pred             CcEEEEECCC-CCcccCCC--CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEEC
Q psy8895         283 RTVKCWDLEY-NKAPVQPG--SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       283 ~~i~~wd~~~-~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~  359 (479)
                      +.+.+|++.. ++......  .......+..+.|+|++++++++..                        .++.|++||+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~------------------------~~~~v~~~~~  174 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL------------------------TANKLWTHRK  174 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET------------------------TTTEEEEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC------------------------CCCEEEEEEE
Confidence            9999999963 33211110  0123356888999999887765432                        2345666666


Q ss_pred             C-CCee--EEEEc--cCCCceEEEEEeCCCcEEEEEcC-C-cEEEEeCC--CCeEE------eeec----CCcc------
Q psy8895         360 A-AGKS--LCTLT--NHKKSVRSVALHPTLYMFASASP-D-NIKQWKCP--EGKFI------QNLP----GHNA------  414 (479)
Q Consensus       360 ~-~~~~--~~~~~--~h~~~v~~i~~~~~~~~l~s~s~-d-~i~~w~~~--~~~~~------~~~~----~h~~------  414 (479)
                      . +++.  +..+.  .|...++.++|+|+++.++.++. + .+.+|+..  ++++.      ..++    +|..      
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            5 4433  22333  23566899999999987766553 3 58888654  56542      2232    2232      


Q ss_pred             eEEEEE-EcCCC-EEEEEeCC-C-----cEEEEecC-CCeEE
Q psy8895         415 IINSIC-VNNEG-VLVSGADN-G-----TMCFWDWR-TGYNF  447 (479)
Q Consensus       415 ~v~~l~-~~~~~-~l~sg~~d-g-----~i~lWd~~-~~~~~  447 (479)
                      .+..++ ++||+ +|+++..+ .     +|.+|++. +|...
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence            588999 99999 66655432 2     89999996 66543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.49  E-value=6.9e-13  Score=128.50  Aligned_cols=209  Identities=9%  Similarity=-0.068  Sum_probs=133.9

Q ss_pred             EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE-------------------EEEcCCCCEEEEE-----EC
Q psy8895         226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG-------------------LTVSPRHPYLFSC-----GD  281 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~-------------------v~~~~~~~~l~s~-----~~  281 (479)
                      .|+|||++|+.++.++.|.+||+.+++.......+......                   +.++|+++.++..     ..
T Consensus        87 ~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~  166 (396)
T 3c5m_A           87 FISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNP  166 (396)
T ss_dssp             EECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCC
T ss_pred             eECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCC
Confidence            57899999999999999999999988776555545443322                   3457777765543     35


Q ss_pred             CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCC------CeEEEEeCCCCC----------------
Q psy8895         282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTEAD------KTVKLYKEDDSA----------------  338 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~~~~~~~~----------------  338 (479)
                      +..|.+||+.+++.....   .....+..+.|+| ++..++..+.+      ..|.+++.....                
T Consensus       167 ~~~l~~~d~~~g~~~~~~---~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIH---QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE  243 (396)
T ss_dssp             CEEEEEEETTTCCEEEEE---EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred             cceEEEEECCCCcEEeec---cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence            668999999775543221   2344678899999 77766665543      357777754321                


Q ss_pred             --CCCCCeEEEEeCC-----CcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEc-----------------CC
Q psy8895         339 --TEESHPVITGSHD-----CTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASAS-----------------PD  393 (479)
Q Consensus       339 --~~~~~~l~sgs~d-----~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s-----------------~d  393 (479)
                        .+++..++.++.+     +.|++||+.+++...... .. ... +.|+| ++.+++.++                 ..
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~  320 (396)
T 3c5m_A          244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDP  320 (396)
T ss_dssp             EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCC
T ss_pred             EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCC
Confidence              1123445555433     449999998876543222 11 233 88999 998887643                 13


Q ss_pred             cEEEEeCCCCeEEeeecCCcc-----------eEEEEEEcCCC-EEEEEe-CCCcEEEEec
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNA-----------IINSICVNNEG-VLVSGA-DNGTMCFWDW  441 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~-~l~sg~-~dg~i~lWd~  441 (479)
                      .+.+||..+++.. .+..+..           .+..++++|++ .|+..+ .++...+|.+
T Consensus       321 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~  380 (396)
T 3c5m_A          321 FLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA  380 (396)
T ss_dssp             EEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             cEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence            4899999877643 3433433           24567889998 666555 4566666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.49  E-value=8e-12  Score=116.21  Aligned_cols=224  Identities=10%  Similarity=0.081  Sum_probs=157.3

Q ss_pred             EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+..+.....+++|+|+|+ +++++..++.|..||..++  ...+..+...+.++++++++.++++...++.|.+||..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            3445667788999999998 7888888999999999887  556677778899999999999887776778999999866


Q ss_pred             CCcccCCCC--CCCCCCeEEEEEeCCCCEEEEEeC-----------------CCeEEEEeCCCCC---------------
Q psy8895         293 NKAPVQPGS--MDSESGIFSMTFDNSGSRLITTEA-----------------DKTVKLYKEDDSA---------------  338 (479)
Q Consensus       293 ~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-----------------d~~i~~~~~~~~~---------------  338 (479)
                      ++.......  ......+..++++++|...++.+.                 .+.|..++.....               
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~  179 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAF  179 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEE
Confidence            543211100  011234567899999988776321                 2345555443110               


Q ss_pred             CCCCCeEEEEeCCCcEEEEECC-CCee---EEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcc
Q psy8895         339 TEESHPVITGSHDCTIRLWDLA-AGKS---LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       339 ~~~~~~l~sgs~d~~v~iwd~~-~~~~---~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~  414 (479)
                      .++...+++.+.++.|++||+. .++.   ...+..+...+..+++++++.++++. .+.|.+|+.. ++.+..+..+..
T Consensus       180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~~~~~~~~  257 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELGRVLTPQT  257 (296)
T ss_dssp             CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEEEEECSSC
T ss_pred             CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEEEEECCCC
Confidence            1234456777778999999987 4443   23333345567789999999988888 6679999975 777777777777


Q ss_pred             eEEEEEE-cCCC-EEEEEeCCCcEEEEecCC
Q psy8895         415 IINSICV-NNEG-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       415 ~v~~l~~-~~~~-~l~sg~~dg~i~lWd~~~  443 (479)
                       +++++| .+++ .|+.++.++ +.-++.++
T Consensus       258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             -CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             -ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence             888899 5776 777777764 33344444

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.49  E-value=7e-13  Score=139.73  Aligned_cols=193  Identities=11%  Similarity=0.076  Sum_probs=133.7

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC-----EEEEEEcCCCCEEEEEECC---------CcEEE
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-----VRGLTVSPRHPYLFSCGDD---------RTVKC  287 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~d---------~~i~~  287 (479)
                      ..+++|+|||++++++  |+.|++||+.++++...+.+|...     ...++|||||++++.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            4578999999999987  999999999999988888887643     2347899999999988776         56679


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEE-
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLC-  366 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~-  366 (479)
                      ||+++++....   ......+...+|+|+|+.++.+. ++.                         |++||+.+++... 
T Consensus        97 ~d~~~~~~~~l---~~~~~~~~~~~~SPdG~~la~~~-~~~-------------------------i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           97 YDLNKRQLITE---ERIPNNTQWVTWSPVGHKLAYVW-NND-------------------------IYVKIEPNLPSYRI  147 (740)
T ss_dssp             EETTTTEECCS---SCCCTTEEEEEECSSTTCEEEEE-TTE-------------------------EEEESSTTSCCEEC
T ss_pred             EECCCCcEEEc---ccCCCcceeeEECCCCCEEEEEE-CCe-------------------------EEEEECCCCceEEE
Confidence            99988764322   22345789999999999877553 344                         4444444433221 


Q ss_pred             EEccCC-----------------CceEEEEEeCCCcEEEEEcCC------------------------------------
Q psy8895         367 TLTNHK-----------------KSVRSVALHPTLYMFASASPD------------------------------------  393 (479)
Q Consensus       367 ~~~~h~-----------------~~v~~i~~~~~~~~l~s~s~d------------------------------------  393 (479)
                      +..++.                 +...++.||||++.|+..+.|                                    
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~  227 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPT  227 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCE
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCe
Confidence            111111                 122357888888877765311                                    


Q ss_pred             -cEEEEeCCC---Ce--EEeeec------CCcceEEEEEEcCCC-EEEEEe----CCCcEEEEecCCCe
Q psy8895         394 -NIKQWKCPE---GK--FIQNLP------GHNAIINSICVNNEG-VLVSGA----DNGTMCFWDWRTGY  445 (479)
Q Consensus       394 -~i~~w~~~~---~~--~~~~~~------~h~~~v~~l~~~~~~-~l~sg~----~dg~i~lWd~~~~~  445 (479)
                       .+.+||+.+   ++  ....+.      +|...+..+.++||+ .++...    .+..|.+||+.+|+
T Consensus       228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred             eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence             367789887   62  222333      478889999999999 455432    33479999999987

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.48  E-value=3.3e-12  Score=123.50  Aligned_cols=222  Identities=16%  Similarity=0.043  Sum_probs=143.3

Q ss_pred             EecCCCccEEE-----EEEcCCCcEEEEEeC-CC--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcE
Q psy8895         214 VISGHLGWVRC-----VAVEPGNEWFATGSA-DK--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV  285 (479)
Q Consensus       214 ~~~~h~~~v~~-----~~~~~~g~~l~sgs~-d~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i  285 (479)
                      .+..|......     .+|+|||++|+.++. ++  .|.+||+.+++......++...+....|+||++.|+.++.++.|
T Consensus        25 ~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l  104 (388)
T 3pe7_A           25 RLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNL  104 (388)
T ss_dssp             ECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEE
T ss_pred             EecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeE
Confidence            44555555555     789999999998887 66  48888999988776666666555567899999999999999999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEE--EEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC-----eEEEEeCCCcEEEEE
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFS--MTFDNSGSRLITTEADKTVKLYKEDDSATEESH-----PVITGSHDCTIRLWD  358 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-----~l~sgs~d~~v~iwd  358 (479)
                      ++||+.+++......  .+...+..  ..+++++..++....+      +.+  ......     .......+..|.+||
T Consensus       105 ~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~dg~~l~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A          105 MRVDLATLEENVVYQ--VPAEWVGYGTWVANSDCTKLVGIEIR------RED--WVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             EEEETTTCCEEEEEE--CCTTEEEEEEEEECTTSSEEEEEEEE------GGG--CCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             EEEECCCCcceeeee--chhhcccccceeECCCCCeecccccc------Ccc--cccccccchhhhhhccCCcceEEEEE
Confidence            999998765432110  11122222  2336777666532110      000  000000     011123456899999


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-------cEEEEeCCCCeEEeeecCCc--ceEEEEEEcCCC-EE
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-------NIKQWKCPEGKFIQNLPGHN--AIINSICVNNEG-VL  427 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-------~i~~w~~~~~~~~~~~~~h~--~~v~~l~~~~~~-~l  427 (479)
                      +.+++.. .+..+...+..+.|+| ++..++..+.+       .+.+++...++.. .+..+.  ..+..+.|+||| .|
T Consensus       175 ~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l  252 (388)
T 3pe7_A          175 LKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSAL  252 (388)
T ss_dssp             TTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCE
T ss_pred             CCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEE
Confidence            9988654 4445667789999999 99877665532       4777787655443 343443  367888999999 56


Q ss_pred             EEEeC--CC---cEEEEecCCCeEE
Q psy8895         428 VSGAD--NG---TMCFWDWRTGYNF  447 (479)
Q Consensus       428 ~sg~~--dg---~i~lWd~~~~~~~  447 (479)
                      +..+.  ++   .|.+||+.+|+..
T Consensus       253 ~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          253 VYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             EEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             EEEecCCCCCcceEEEEecCCCceE
Confidence            54332  22   3999999998753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=8.5e-11  Score=111.09  Aligned_cols=220  Identities=11%  Similarity=0.050  Sum_probs=151.5

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEE
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCW  288 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~w  288 (479)
                      ..+.++...+.+++|+++|++++++..++.|.+||..+++.......+...+.++++++++.++++...+    +.|.+|
T Consensus        38 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~  117 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAA  117 (333)
T ss_dssp             EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEE
T ss_pred             EEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEE
Confidence            4556677778999999999988889899999999999887765544566789999999999888777666    689999


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCC----------------CCCCCeE-
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA------DKTVKLYKEDDSA----------------TEESHPV-  345 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~----------------~~~~~~l-  345 (479)
                      |.+................+..+.+++++...++...      .+.|..++.....                .++...+ 
T Consensus       118 d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          118 TENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLW  197 (333)
T ss_dssp             CTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred             eCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEE
Confidence            9876553211111123456889999999987776653      2345555443211                1223334 


Q ss_pred             EEEeCCCcEEEEECCC-CeeEEE--------EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc-
Q psy8895         346 ITGSHDCTIRLWDLAA-GKSLCT--------LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA-  414 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~-~~~~~~--------~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~-  414 (479)
                      ++.+.++.|.+||+.+ ++.+..        +.++ ..+..+++++++.++++...+ .|.+|+. +++.+..+..+.. 
T Consensus       198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~  275 (333)
T 2dg1_A          198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD  275 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred             EEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCc
Confidence            4555678999999964 332221        1222 467889999999988887654 6999998 5666666544432 


Q ss_pred             -----eEEEEEEcCCC-EEEEEeCCC
Q psy8895         415 -----IINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       415 -----~v~~l~~~~~~-~l~sg~~dg  434 (479)
                           .+.++++++|+ .|+.++.++
T Consensus       276 ~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          276 EGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             cccccCcceEEECCCCCEEEEEeCcc
Confidence                 68889999886 665554443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=2.5e-12  Score=134.54  Aligned_cols=226  Identities=10%  Similarity=-0.015  Sum_probs=150.7

Q ss_pred             CCCccEEEEEEcCCCcEEE-----EEeCCCeEEEEECCCCceEEEEecCCcCE--EEEEEcCCCCEEEEEECCCc-----
Q psy8895         217 GHLGWVRCVAVEPGNEWFA-----TGSADKIIKVWDLATGKLKLSLTGHVGSV--RGLTVSPRHPYLFSCGDDRT-----  284 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~-----sgs~d~~i~iWd~~~~~~~~~~~~h~~~v--~~v~~~~~~~~l~s~~~d~~-----  284 (479)
                      +|...+.+++|+|||++||     +|+.+..|++||+.+++.+.  ..+...+  ..++|+||++.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            5666789999999999988     45556789999999987641  1122222  57899999999999888776     


Q ss_pred             --------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC----eEEEEeCCCCCC-----------
Q psy8895         285 --------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEADK----TVKLYKEDDSAT-----------  339 (479)
Q Consensus       285 --------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~~~~~~~~~-----------  339 (479)
                              |++|++.+....  .......+...+..+.++|+|++++..+.++    .+.+++......           
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    999999876532  1111122334678999999999888777655    455554322111           


Q ss_pred             ----CCCCeEEEEe---CCCcEEEEECCCCee--EEEEccC--CCceEEEEEeCCCcEEEEEcCCc-EEEEeCC-CCeEE
Q psy8895         340 ----EESHPVITGS---HDCTIRLWDLAAGKS--LCTLTNH--KKSVRSVALHPTLYMFASASPDN-IKQWKCP-EGKFI  406 (479)
Q Consensus       340 ----~~~~~l~sgs---~d~~v~iwd~~~~~~--~~~~~~h--~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~-~~~~~  406 (479)
                          .++..++.+.   .++.|.+||+.+++.  ...+..|  ...+..++++ ++.++++...+. .++|... +++..
T Consensus       276 ~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  354 (695)
T 2bkl_A          276 EVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV  354 (695)
T ss_dssp             EEEEETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred             EEEecCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence                1223333443   257899999987653  2333333  4568889998 667777776663 5555432 45566


Q ss_pred             eeecCC-cceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895         407 QNLPGH-NAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY  445 (479)
Q Consensus       407 ~~~~~h-~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~  445 (479)
                      ..+..+ .+.+..+.+++++ .++ +.+   ..++|.+||+.+|+
T Consensus       355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            666655 6678888888887 544 332   35789999999886

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.46  E-value=5.4e-12  Score=131.21  Aligned_cols=229  Identities=11%  Similarity=0.091  Sum_probs=158.0

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEE--eCCCeEEEEECCCCceEEEEecCCcCEE---------EEEEc--CCCCE-EEEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATG--SADKIIKVWDLATGKLKLSLTGHVGSVR---------GLTVS--PRHPY-LFSCG  280 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sg--s~d~~i~iWd~~~~~~~~~~~~h~~~v~---------~v~~~--~~~~~-l~s~~  280 (479)
                      +.+|...+..+++++++.++++.  +.++...||....+.....+..|...+.         ...++  ||++. |+.++
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~   98 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTH   98 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEB
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEE
Confidence            45688899999999887777777  5688999999655555566776765555         55565  99998 76554


Q ss_pred             C-CCcEEEEECC--C-CCcccCCCCCC---CCCCeEEEEEeCCCCEEEEEeCC----------CeEEEEeCCC------C
Q psy8895         281 D-DRTVKCWDLE--Y-NKAPVQPGSMD---SESGIFSMTFDNSGSRLITTEAD----------KTVKLYKEDD------S  337 (479)
Q Consensus       281 ~-d~~i~~wd~~--~-~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d----------~~i~~~~~~~------~  337 (479)
                      . +..|.++++.  . +... ......   +...+..++|+|+++.++.++.+          ..|.+|+...      .
T Consensus        99 ~~~~~l~~~~~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  177 (662)
T 3azo_A           99 FGDQRLYAFEPDAPGGAVPR-PLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS  177 (662)
T ss_dssp             TTTCCEEEECTTSTTCCCCE-ECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred             CCCCeEEEEcCCCCCCCCCE-eccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence            3 5566677765  2 2221 111111   23457889999999999988876          4788898765      2


Q ss_pred             C----C-------------CCCCeEEEEeCC--------CcEEEEECC-CC---eeEEEEccCCCceEEEEEeCCCcEEE
Q psy8895         338 A----T-------------EESHPVITGSHD--------CTIRLWDLA-AG---KSLCTLTNHKKSVRSVALHPTLYMFA  388 (479)
Q Consensus       338 ~----~-------------~~~~~l~sgs~d--------~~v~iwd~~-~~---~~~~~~~~h~~~v~~i~~~~~~~~l~  388 (479)
                      .    .             +++..|+.++.+        ..|++||+. ++   +......+|...+..+.|+||+++++
T Consensus       178 ~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          178 AVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             GSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEE
T ss_pred             ceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEE
Confidence            1    1             234557766654        379999999 56   34333445678899999999999777


Q ss_pred             EEcCC---cEEEEeCCCCeEEeeecCCcce--------EEEEEEcCCC-EEEEEeCCCcEEEE--ecCCCe
Q psy8895         389 SASPD---NIKQWKCPEGKFIQNLPGHNAI--------INSICVNNEG-VLVSGADNGTMCFW--DWRTGY  445 (479)
Q Consensus       389 s~s~d---~i~~w~~~~~~~~~~~~~h~~~--------v~~l~~~~~~-~l~sg~~dg~i~lW--d~~~~~  445 (479)
                      +++.+   .+..|+..+++......++...        +..+++++++ ++++++. +.++||  |..++.
T Consensus       258 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          258 ATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             EECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             EECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence            77655   3677777677665544444332        4578888888 7788888 999999  555554

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.46  E-value=2.9e-11  Score=110.53  Aligned_cols=222  Identities=9%  Similarity=0.035  Sum_probs=153.0

Q ss_pred             cEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC
Q psy8895         221 WVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~  299 (479)
                      ...+++++++|++++ +.+.++.|.+||..++........+...+.++++++++.++++.. ++.|..||..........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~  103 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP  103 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee
Confidence            567899999999777 557789999999866543322223334678899999998666655 889999998654322111


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCC
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~  362 (479)
                        ......+..+++++++...++...++.|..|+......                 .+....++...++.|.+||....
T Consensus       104 --~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          104 --FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             --CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             --cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence              12224678999999998777777788888886543211                 12334455556788999998876


Q ss_pred             eeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         363 KSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       363 ~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ........+...+..+++++++.++++...+ .|.+|+............+...+.++++++++ .+++...+++|++++
T Consensus       182 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~  261 (270)
T 1rwi_B          182 NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  261 (270)
T ss_dssp             CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence            5443333333678999999999888887655 59999986654433333344578899999988 778888899999999


Q ss_pred             cCCCe
Q psy8895         441 WRTGY  445 (479)
Q Consensus       441 ~~~~~  445 (479)
                      ....+
T Consensus       262 ~~~~~  266 (270)
T 1rwi_B          262 SLEHH  266 (270)
T ss_dssp             CCGGG
T ss_pred             CCCcc
Confidence            87654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=3.5e-10  Score=114.27  Aligned_cols=239  Identities=14%  Similarity=0.091  Sum_probs=156.4

Q ss_pred             EEEEEc----CCCcEEEEEeC-CCeEEEEECCCCceEEEEecC----------C-cCEEEEEEcCCCCEE-EEEECCCcE
Q psy8895         223 RCVAVE----PGNEWFATGSA-DKIIKVWDLATGKLKLSLTGH----------V-GSVRGLTVSPRHPYL-FSCGDDRTV  285 (479)
Q Consensus       223 ~~~~~~----~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h----------~-~~v~~v~~~~~~~~l-~s~~~d~~i  285 (479)
                      ..++|+    |||++++.++. ++++.++|..+.+.+..+...          . ..+..+..+++++.+ ++...+|.|
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v  322 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  322 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence            356788    69988776665 589999999999888776522          1 257788888886654 455677999


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCC----------C-----------CCC
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSAT----------E-----------ESH  343 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~----------~-----------~~~  343 (479)
                      .++|........ ............+.|+|++++++++. .+++|.++|......          +           ...
T Consensus       323 ~~vd~~~~~~~~-v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g  401 (567)
T 1qks_A          323 LLVDYTDLNNLK-TTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  401 (567)
T ss_dssp             EEEETTCSSEEE-EEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEecCCCccce-eeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence            999986532111 00112223456788999999887665 567888888654210          0           112


Q ss_pred             eE-EEEe-CCCcEEEEECCC-------CeeEEEEccCCCceEEEEEeCCCcEEEEEc--------CCcEEEEeCCCC---
Q psy8895         344 PV-ITGS-HDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVALHPTLYMFASAS--------PDNIKQWKCPEG---  403 (479)
Q Consensus       344 ~l-~sgs-~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s--------~d~i~~w~~~~~---  403 (479)
                      .+ +++. .+++|.++|...       .+.+.+++.....-..+..+|+++.+....        .+.|.++|..+.   
T Consensus       402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~  481 (567)
T 1qks_A          402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGD  481 (567)
T ss_dssp             EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCS
T ss_pred             cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccc
Confidence            23 3443 468999999987       667888775433334577899987666544        236999998766   


Q ss_pred             --e-EEeeec--------CCcceEEEEEEcCCC--EEEEEe----CCCcEEEEecCCCeEEEEEEEeEecCCCCCceEE
Q psy8895         404 --K-FIQNLP--------GHNAIINSICVNNEG--VLVSGA----DNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF  465 (479)
Q Consensus       404 --~-~~~~~~--------~h~~~v~~l~~~~~~--~l~sg~----~dg~i~lWd~~~~~~~~~~~~~~~~~~~~~~~~~  465 (479)
                        . ....+.        .-...+..+.|+++|  .++|..    .++.|.++|.+|++...+++-   ...+++++-|
T Consensus       482 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~---~~~~~P~g~f  557 (567)
T 1qks_A          482 GSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD---ERLVTPTGKF  557 (567)
T ss_dssp             SSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC---TTCCSEEEEE
T ss_pred             ccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC---CcccCCCeee
Confidence              1 112221        123468889999998  345533    479999999999987765543   2244555444

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.43  E-value=4.5e-11  Score=109.87  Aligned_cols=211  Identities=9%  Similarity=0.048  Sum_probs=154.4

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCe
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGI  308 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i  308 (479)
                      .++.|++++.|+.|.+||.++|+.++.+..+. ..+.++.++|+|++++  +.++.|..||. +++....... .....+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~-~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA-PAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC-CTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC-CCCccc
Confidence            46899999999999999999999999998876 4788999999999888  45778999998 5554433211 112357


Q ss_pred             EEEEEeCCCCEEEEEeC-CCeEEEEeCCCC----------------------CCCCCCeEEEEeCCCcEEEEECCCCeeE
Q psy8895         309 FSMTFDNSGSRLITTEA-DKTVKLYKEDDS----------------------ATEESHPVITGSHDCTIRLWDLAAGKSL  365 (479)
Q Consensus       309 ~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~----------------------~~~~~~~l~sgs~d~~v~iwd~~~~~~~  365 (479)
                      ..+.+.++++.+++.+. ++.+..++.+..                      ...+...+++.+.++.|..||.+ ++.+
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            78888999999988877 666655543211                      01234678888899999999998 9999


Q ss_pred             EEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------cceEEEEEEcCCC-EEEEEeCCC---
Q psy8895         366 CTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------NAIINSICVNNEG-VLVSGADNG---  434 (479)
Q Consensus       366 ~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------~~~v~~l~~~~~~-~l~sg~~dg---  434 (479)
                      .++..+ ....++...+++.+++++..+ .+..+|..+|+.+.++..+      -..+..+...+++ ++++. .+|   
T Consensus       159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~-~~g~~~  236 (276)
T 3no2_A          159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN-WQGHDR  236 (276)
T ss_dssp             EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE-ECTTCT
T ss_pred             EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe-ccCccc
Confidence            988754 345677888999888887766 5999999999998776432      2347788888888 44444 222   


Q ss_pred             ------cEEEEec-CCCeEE
Q psy8895         435 ------TMCFWDW-RTGYNF  447 (479)
Q Consensus       435 ------~i~lWd~-~~~~~~  447 (479)
                            ..+++++ .+|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~g~~~  256 (276)
T 3no2_A          237 EAGKGKHPQLVEIDSEGKVV  256 (276)
T ss_dssp             TGGGSCCCSEEEECTTSBEE
T ss_pred             cccccCCceEEEECCCCCEE
Confidence                  3356666 456553

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.42  E-value=3.3e-09  Score=98.15  Aligned_cols=217  Identities=12%  Similarity=0.089  Sum_probs=143.4

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE-EEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLK-LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~-~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      +.+++++++|.+.++...++.|..||.. ++.. ..+......+..+++++++..+++...++.|..||. .++..... 
T Consensus        59 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~-  135 (299)
T 2z2n_A           59 VMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYE-  135 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred             eeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEec-
Confidence            4567788888888877778889999976 4332 222234457899999999988877777889999998 33322111 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      .......+..+.+++++...++....+.+..++......                 .+....++...++.|..||. +++
T Consensus       136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~  214 (299)
T 2z2n_A          136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE  214 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence            111234678899999988777776677888877621100                 11233444445788999998 555


Q ss_pred             eEE-EEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEee-ecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         364 SLC-TLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQN-LPGHNAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       364 ~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      ... .+..+...+.++++++++.++++... +.+..|+. +++.... +..+...+.++++ +++.|..+...+.+..+|
T Consensus       215 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~  292 (299)
T 2z2n_A          215 ITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLT  292 (299)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEE
T ss_pred             EEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEE
Confidence            332 23334567899999999998888744 56999998 5554322 4455667889999 888554444456777777


Q ss_pred             cCCC
Q psy8895         441 WRTG  444 (479)
Q Consensus       441 ~~~~  444 (479)
                      .+++
T Consensus       293 ~~~~  296 (299)
T 2z2n_A          293 LIKD  296 (299)
T ss_dssp             EC--
T ss_pred             cCcc
Confidence            7654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.41  E-value=3.2e-11  Score=114.65  Aligned_cols=211  Identities=14%  Similarity=0.144  Sum_probs=142.6

Q ss_pred             ccEEEEEEcCCCcEEEEEeCC---C--eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC------------
Q psy8895         220 GWVRCVAVEPGNEWFATGSAD---K--IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD------------  282 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d---~--~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d------------  282 (479)
                      ..+.+++|+|||++|+..+.+   +  .|.+||+.+++.......+ . +..++|+||++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            457789999999999887754   3  4778888888765544433 3 8999999999988877632            


Q ss_pred             ---------------CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-------eEEEEeCCCCC--
Q psy8895         283 ---------------RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK-------TVKLYKEDDSA--  338 (479)
Q Consensus       283 ---------------~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~~~~~~~~--  338 (479)
                                     ..|.+||+.+++.......   . .+..+.|+|++ .++++..+.       ...+|..+...  
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE
Confidence                           5788999977654111111   1 56688999999 777775542       33444332111  


Q ss_pred             -----------CCCCCeEEEEeCC--------CcEEEEECCCCeeEEEEccCCCceEE-EEEeCCCcEEEEEcCC-cEEE
Q psy8895         339 -----------TEESHPVITGSHD--------CTIRLWDLAAGKSLCTLTNHKKSVRS-VALHPTLYMFASASPD-NIKQ  397 (479)
Q Consensus       339 -----------~~~~~~l~sgs~d--------~~v~iwd~~~~~~~~~~~~h~~~v~~-i~~~~~~~~l~s~s~d-~i~~  397 (479)
                                 .+++..++.++.+        ..|.+||  +++.......|...+.. +.|+ ++ ++++++.+ .+.+
T Consensus       212 ~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l  287 (347)
T 2gop_A          212 KMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNL  287 (347)
T ss_dssp             EEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred             EeccCcceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEE
Confidence                       1234556665543        3677788  45544334456778886 8999 88 77766655 5888


Q ss_pred             EeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcE-EEEecCCCe
Q psy8895         398 WKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTM-CFWDWRTGY  445 (479)
Q Consensus       398 w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i-~lWd~~~~~  445 (479)
                      | +.+++... +..+...|.++++++ .++++++.++.. +||.+. |.
T Consensus       288 ~-~~~g~~~~-~~~~~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          288 Y-IWDGEIKP-IAKGRHWIMGFDVDE-IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             E-EESSSEEE-EECSSSEEEEEEESS-SEEEEEECSSSCCEEEEES-SS
T ss_pred             E-EcCCceEE-EecCCCeEEeeeeeC-cEEEEEcCCCChHHheEeC-Cc
Confidence            8 76666544 334577899999999 877777777775 888876 53

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.39  E-value=2.4e-12  Score=124.72  Aligned_cols=218  Identities=10%  Similarity=-0.033  Sum_probs=138.6

Q ss_pred             cEEEEEEcCCCcEEEEEeCC---CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         221 WVRCVAVEPGNEWFATGSAD---KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d---~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      .+.+++|+|||++|+..+..   ..|.+||+.+++......++......+.|+||++.|+.++.++.|++||+..++...
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~  116 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV  116 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence            36678899999998877543   468888998887654333332222336899999999999999999999987654321


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEE-----eCCCcEEEEECCCCeeEEEEccCC
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG-----SHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sg-----s~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ...  .+..      +.++++.++....+....+|.......++...++..     ..+..|++||+.+++..... .+.
T Consensus       117 ~~~--~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~  187 (396)
T 3c5m_A          117 IYT--VDEE------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDT  187 (396)
T ss_dssp             EEE--CCTT------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EES
T ss_pred             EEe--cccc------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCC
Confidence            110  0111      344555555554444444444322222333333322     35668999999987765444 456


Q ss_pred             CceEEEEEeC-CCcEEEEEcC-------CcEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCC-----CcEE
Q psy8895         373 KSVRSVALHP-TLYMFASASP-------DNIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADN-----GTMC  437 (479)
Q Consensus       373 ~~v~~i~~~~-~~~~l~s~s~-------d~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~d-----g~i~  437 (479)
                      ..+..+.|+| ++..++..+.       ..+.+|+...++........ ...+..+.|+|++ .|+.++.+     +.|.
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            7789999999 7775554433       24778888665533322322 3468889999998 66666543     4499


Q ss_pred             EEecCCCeEE
Q psy8895         438 FWDWRTGYNF  447 (479)
Q Consensus       438 lWd~~~~~~~  447 (479)
                      +||+.+++..
T Consensus       268 ~~d~~~g~~~  277 (396)
T 3c5m_A          268 KANPETLENE  277 (396)
T ss_dssp             EECTTTCCEE
T ss_pred             EEECCCCCeE
Confidence            9999988653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.39  E-value=3.7e-10  Score=106.60  Aligned_cols=227  Identities=11%  Similarity=0.007  Sum_probs=154.5

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      ...+.+. +++++++...++.|.+||..+++.+.++.. ......++++++++..++...++.|.+||+++.+.......
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            4556664 466667777789999999999999888853 35678999988885545544889999999987654321100


Q ss_pred             CC---CCCCeEEEEEeCCCCEEEEEe--CCCeEEEEeCCCCCC----------------CCCCeEEEEeCC---------
Q psy8895         302 MD---SESGIFSMTFDNSGSRLITTE--ADKTVKLYKEDDSAT----------------EESHPVITGSHD---------  351 (479)
Q Consensus       302 ~~---~~~~i~~~~~~~~~~~l~~~~--~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d---------  351 (479)
                      ..   .......+++  ++..+.++.  .++.|.++|......                .+...++++..+         
T Consensus       124 g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~  201 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYE  201 (328)
T ss_dssp             TTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred             CCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccC
Confidence            00   0012334555  344555554  478999998764321                123344444444         


Q ss_pred             -CcEEEEECCCCeeEEEEccC-CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEee--ecCCcceEEEEEEcC-CC-
Q psy8895         352 -CTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQN--LPGHNAIINSICVNN-EG-  425 (479)
Q Consensus       352 -~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~--~~~h~~~v~~l~~~~-~~-  425 (479)
                       +.|.++|..+++...++.-. ......++++|++..+..+.. .+.+||..+++....  +..+......++++| ++ 
T Consensus       202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~  280 (328)
T 3dsm_A          202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGE  280 (328)
T ss_dssp             CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCC
T ss_pred             CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCe
Confidence             78999999999887776532 236789999998776665554 889999988876421  222245688999998 55 


Q ss_pred             EEEEE----eCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         426 VLVSG----ADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       426 ~l~sg----~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      .+++.    ..+++|.+||.. |+.++++++..
T Consensus       281 lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~  312 (328)
T 3dsm_A          281 VYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGI  312 (328)
T ss_dssp             EEEEECTTSSSEEEEEEECTT-CCEEEEEEEEE
T ss_pred             EEEEcccccccCCEEEEECCC-CCEEEEEEecc
Confidence            55666    678999999998 88888877654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.37  E-value=1.4e-11  Score=128.76  Aligned_cols=177  Identities=15%  Similarity=0.017  Sum_probs=113.2

Q ss_pred             EEEcCCCcEEEEEeCCCe-------------EEEEECCCCc----eEEEEecCCcCEEEEEEcCCCCEEEEEECCC----
Q psy8895         225 VAVEPGNEWFATGSADKI-------------IKVWDLATGK----LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR----  283 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~-------------i~iWd~~~~~----~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~----  283 (479)
                      ++|+|||+.|+.++.|..             |++|++.++.    .+.....|...+..+.|+|||++++..+.++    
T Consensus       173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  252 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN  252 (695)
T ss_dssp             CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred             eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence            467888888888888766             9999998876    2223334556788999999999988776555    


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe---CCCeEEEEeCCCCCC--------C------------
Q psy8895         284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE---ADKTVKLYKEDDSAT--------E------------  340 (479)
Q Consensus       284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~~~~~~~~~--------~------------  340 (479)
                      .|.+||....+.....   ..........+ +++..++.+.   .++.|.+|+......        .            
T Consensus       253 ~l~~~~~~~~~~~~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~  328 (695)
T 2bkl_A          253 DVYWKRPGEKDFRLLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV  328 (695)
T ss_dssp             EEEEECTTCSSCEEEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE
T ss_pred             EEEEEcCCCCceEEee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE
Confidence            6666665433221111   12223444445 4555444443   246788888754321        0            


Q ss_pred             CCCeEEEEeCCCcEEEEECC-CCeeEEEEccC-CCceEEEEEeCCCcEEE-EE-cCC---cEEEEeCCCCeE
Q psy8895         341 ESHPVITGSHDCTIRLWDLA-AGKSLCTLTNH-KKSVRSVALHPTLYMFA-SA-SPD---NIKQWKCPEGKF  405 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~-~~~~~~~~~~h-~~~v~~i~~~~~~~~l~-s~-s~d---~i~~w~~~~~~~  405 (479)
                      ...++++...|+..++|.+. .++....+..+ ...+..++++|++..++ +. +..   .+..||..+++.
T Consensus       329 ~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          329 GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            12356788889988888665 35556666555 56788888999876544 22 222   488999988764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.37  E-value=3.8e-10  Score=104.76  Aligned_cols=178  Identities=10%  Similarity=0.087  Sum_probs=121.9

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEEEEC----------------
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFSCGD----------------  281 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~~~----------------  281 (479)
                      +.+++++++|+++++...++.|.+||..+++........    ...+..++++|+|+++++.+.                
T Consensus        71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~  150 (296)
T 3e5z_A           71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMEL  150 (296)
T ss_dssp             EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCS
T ss_pred             cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccC
Confidence            467888899998888877889999999888765433221    124567999999998887321                


Q ss_pred             -CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC-CCC--------------------
Q psy8895         282 -DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD-SAT--------------------  339 (479)
Q Consensus       282 -d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~-~~~--------------------  339 (479)
                       .+.|..+|.. ++....   .........++|+|+++.+++.+.++.|.+|+... ...                    
T Consensus       151 ~~~~l~~~~~~-g~~~~~---~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d  226 (296)
T 3e5z_A          151 PGRWVFRLAPD-GTLSAP---IRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD  226 (296)
T ss_dssp             SSCEEEEECTT-SCEEEE---ECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB
T ss_pred             CCcEEEEECCC-CCEEEe---ecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC
Confidence             2355555543 221111   12234567899999999887777788999998641 111                    


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeEEe
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL-HPTLYMFASASPDNIKQWKCPEGKFIQ  407 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~~~  407 (479)
                      .+.. +..+. ++.|.+||.. ++.+..+..+.. +++++| +|++..|..++.+.+..++..+.++.+
T Consensus       227 ~~G~-l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~~  291 (296)
T 3e5z_A          227 AGGL-IWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLEH  291 (296)
T ss_dssp             TTSC-EEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCCC
T ss_pred             CCCC-EEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccccc
Confidence            1122 34444 8899999986 777778877777 899999 588887777777777777776665543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.31  E-value=4.8e-10  Score=117.51  Aligned_cols=161  Identities=13%  Similarity=0.008  Sum_probs=103.8

Q ss_pred             CCccEEEEEEcCCCcEEEEEeC-----CCeEEEEECCC------Cc-eEEEEecCCcCEEEEEEcCCCCEEEEEECC---
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSA-----DKIIKVWDLAT------GK-LKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---  282 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~-----d~~i~iWd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---  282 (479)
                      |...+..+.|+|||++|+.++.     +..|.+||+.+      +. ....+..+...+.. .|++++..++..+.+   
T Consensus       231 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~  309 (710)
T 2xdw_A          231 EPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP  309 (710)
T ss_dssp             CTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred             CCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence            5556788999999999887765     56899999986      53 34566666666554 488888887765543   


Q ss_pred             -CcEEEEECCCCCc--ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC--cEEEE
Q psy8895         283 -RTVKCWDLEYNKA--PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC--TIRLW  357 (479)
Q Consensus       283 -~~i~~wd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~--~v~iw  357 (479)
                       ..|.+||+.+...  ............+..+.+.+++..+                         ++...|+  .|.+|
T Consensus       310 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv-------------------------~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLV-------------------------LCYLHDVKNTLQLH  364 (710)
T ss_dssp             TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEE-------------------------EEEEETTEEEEEEE
T ss_pred             CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEE-------------------------EEEEECCEEEEEEE
Confidence             3699999876531  0111000111234455555433333                         4444454  35567


Q ss_pred             ECCCCeeEEEEccCCCceEEEEEeCCCcEEE-EE-cC---CcEEEEeCCCCe
Q psy8895         358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFA-SA-SP---DNIKQWKCPEGK  404 (479)
Q Consensus       358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~-s~-s~---d~i~~w~~~~~~  404 (479)
                      |+.+++.+..+..+...+..++++|++..++ +. +.   ..+..||..+++
T Consensus       365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7767777778877778899999999875443 32 32   248899998776

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.30  E-value=9.5e-09  Score=94.96  Aligned_cols=225  Identities=12%  Similarity=0.065  Sum_probs=156.5

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +..+...+.+++++++|++.++...++.|.+||.. ++... ....+...+.++++++++..+++...++.|..||....
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~   88 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI   88 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc
Confidence            33455678999999999988877778899999988 65433 22234567899999999988877766888999997522


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEE
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRL  356 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~i  356 (479)
                      ......  ......+..+.+++++...++...++.+..++......                 .+....++...++.|..
T Consensus        89 ~~~~~~--~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~  166 (299)
T 2z2n_A           89 IKEYTL--PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGR  166 (299)
T ss_dssp             EEEEEC--SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred             EEEEeC--CCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEE
Confidence            111111  11334688899999888877777778888887632100                 12233444555688999


Q ss_pred             EECCCCeeEEE-EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEee-ecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         357 WDLAAGKSLCT-LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQN-LPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       357 wd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~-~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                      ||. +++.... +..+...+..+++++++.++++...+ .+..|+. +++.... +..+...+.++++++++ .+++...
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~  244 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWG  244 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETT
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccC
Confidence            998 5554332 33344568899999999988887644 6999998 6665432 34455678899999988 4555557


Q ss_pred             CCcEEEEecCCCe
Q psy8895         433 NGTMCFWDWRTGY  445 (479)
Q Consensus       433 dg~i~lWd~~~~~  445 (479)
                      ++.|..||. ++.
T Consensus       245 ~~~i~~~d~-~g~  256 (299)
T 2z2n_A          245 ANKIGRLTS-NNI  256 (299)
T ss_dssp             TTEEEEEET-TTE
T ss_pred             CceEEEECC-CCc
Confidence            789999998 453

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.30  E-value=2.4e-10  Score=120.34  Aligned_cols=225  Identities=15%  Similarity=0.050  Sum_probs=145.5

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCC-----CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCc-------
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSAD-----KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT-------  284 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d-----~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-------  284 (479)
                      +|...+..++|+|||++|+.++.+     ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.       
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~  237 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ  237 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence            344568889999999998877654     4699999999987543 111112257889999 88888776654       


Q ss_pred             -------EEEEECCCCCcc--cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCC--C-C--------
Q psy8895         285 -------VKCWDLEYNKAP--VQPGSMDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDDS--A-T--------  339 (479)
Q Consensus       285 -------i~~wd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~--~-~--------  339 (479)
                             |++|++.+....  ...........+..+.|+|+|++++..+.++     .+.+++....  . .        
T Consensus       238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  317 (741)
T 1yr2_A          238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLK  317 (741)
T ss_dssp             -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSS
T ss_pred             cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCC
Confidence                   889998765421  1111112223578899999999888776543     7888886443  2 1        


Q ss_pred             -------CCCCeEEEEeC----CCcEEEEECCCC--eeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEE--EEeCCCC
Q psy8895         340 -------EESHPVITGSH----DCTIRLWDLAAG--KSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIK--QWKCPEG  403 (479)
Q Consensus       340 -------~~~~~l~sgs~----d~~v~iwd~~~~--~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~--~w~~~~~  403 (479)
                             .++..++..+.    ++.|.+||+.++  +....+..+...+..++++ ++.++++...+ ..+  +++. ++
T Consensus       318 ~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-~g  395 (741)
T 1yr2_A          318 AQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-DG  395 (741)
T ss_dssp             SCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-TS
T ss_pred             ceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-CC
Confidence                   12234555444    345999999874  3333344555667778887 55666666655 344  4454 45


Q ss_pred             eEEeeecC-CcceEEEEEEcCCC-EEE-EEe---CCCcEEEEecCCCe
Q psy8895         404 KFIQNLPG-HNAIINSICVNNEG-VLV-SGA---DNGTMCFWDWRTGY  445 (479)
Q Consensus       404 ~~~~~~~~-h~~~v~~l~~~~~~-~l~-sg~---~dg~i~lWd~~~~~  445 (479)
                      +....+.. +.+.+..+.+++++ .|+ +.+   ..++|.+||+.+|+
T Consensus       396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            55666654 36778888898876 444 322   35789999999886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.29  E-value=2.7e-09  Score=99.61  Aligned_cols=225  Identities=11%  Similarity=0.148  Sum_probs=151.0

Q ss_pred             CCCccEEEEEEcCCCcEEEE-------EeCCCeEEEEECCCCceEEEEe----cCCcCEEEEEEcCC-CCEEEEEECCCc
Q psy8895         217 GHLGWVRCVAVEPGNEWFAT-------GSADKIIKVWDLATGKLKLSLT----GHVGSVRGLTVSPR-HPYLFSCGDDRT  284 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~s-------gs~d~~i~iWd~~~~~~~~~~~----~h~~~v~~v~~~~~-~~~l~s~~~d~~  284 (479)
                      +......+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ +.++++ +.++.
T Consensus        15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~   93 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLG   93 (314)
T ss_dssp             CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred             ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence            33455678999999988888       6778899999988887643221    24467899999999 765554 44457


Q ss_pred             EEEEECCCCCcccC-CCC--CCCCCCeEEEEEeCCCCEEEEEeCC---------------CeEEEEeCCCCC--------
Q psy8895         285 VKCWDLEYNKAPVQ-PGS--MDSESGIFSMTFDNSGSRLITTEAD---------------KTVKLYKEDDSA--------  338 (479)
Q Consensus       285 i~~wd~~~~~~~~~-~~~--~~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~~~~~~~~--------  338 (479)
                      |.+||.+ ++.... ...  ......+..+.+++++...++...+               +.+..++.....        
T Consensus        94 l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~  172 (314)
T 1pjx_A           94 LLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQ  172 (314)
T ss_dssp             EEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEES
T ss_pred             EEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCC
Confidence            8999987 443211 110  1112347789999999877776554               455555543110        


Q ss_pred             -------C----CCCCeE-EEEeCCCcEEEEECC-CCe-----eEEEEccCC-CceEEEEEeCCCcEEEEEcC-CcEEEE
Q psy8895         339 -------T----EESHPV-ITGSHDCTIRLWDLA-AGK-----SLCTLTNHK-KSVRSVALHPTLYMFASASP-DNIKQW  398 (479)
Q Consensus       339 -------~----~~~~~l-~sgs~d~~v~iwd~~-~~~-----~~~~~~~h~-~~v~~i~~~~~~~~l~s~s~-d~i~~w  398 (479)
                             .    .+...+ ++...++.|.+||+. .++     ....+..+. .....+++++++.++++... +.|.+|
T Consensus       173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~  252 (314)
T 1pjx_A          173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEE
Confidence                   0    112233 344567889999976 343     223343443 56788999999998888754 469999


Q ss_pred             eCCCCeEEeeecCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCC
Q psy8895         399 KCPEGKFIQNLPGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRT  443 (479)
Q Consensus       399 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~  443 (479)
                      +..+++.+..+..+...+.++++++++ .| ++...++.|..|+...
T Consensus       253 d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          253 GPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            988777766666666788999999888 35 4555668899998764

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.28  E-value=5e-10  Score=106.36  Aligned_cols=207  Identities=11%  Similarity=0.095  Sum_probs=136.2

Q ss_pred             ccEEEEEEcCCCcEEEEEe---------CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---C--cE
Q psy8895         220 GWVRCVAVEPGNEWFATGS---------ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---R--TV  285 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs---------~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~--~i  285 (479)
                      ..+...++  ||++++...         .++.|.+||+.+++.. .+    ..+..++|+|||+.|+.++.+   +  .|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence            34566777  788776542         2567999999988754 33    467889999999999877653   3  47


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC---------------------------CeEEEEeCCCCC
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD---------------------------KTVKLYKEDDSA  338 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------~~i~~~~~~~~~  338 (479)
                      .+||+..++.....   .... +..+.|+|+++.++.++.+                           ..|.+|+.....
T Consensus        88 ~~~~~~~g~~~~l~---~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~  163 (347)
T 2gop_A           88 WVADLETLSSKKIL---EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE  163 (347)
T ss_dssp             EEEETTTTEEEEEE---EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE
T ss_pred             EEEECCCCceEEEE---cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe
Confidence            77788765432211   1122 7889999999988877632                           457777765432


Q ss_pred             C---------------CCCCeEEEEeCCC-------cEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC---
Q psy8895         339 T---------------EESHPVITGSHDC-------TIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD---  393 (479)
Q Consensus       339 ~---------------~~~~~l~sgs~d~-------~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d---  393 (479)
                      .               +++ .+++++.+.       ...+|.+.+++ ...+..+ ..+..+  +|++..++..+.+   
T Consensus       164 ~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          164 VIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             EEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEccccC
Confidence            2               123 555665542       34454444444 3444444 455554  8999877655422   


Q ss_pred             ------cEEEEeCCCCeEEeeecCCcceEEE-EEEcCCCEEEEEeCCCcEEEEecCCCeE
Q psy8895         394 ------NIKQWKCPEGKFIQNLPGHNAIINS-ICVNNEGVLVSGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       394 ------~i~~w~~~~~~~~~~~~~h~~~v~~-l~~~~~~~l~sg~~dg~i~lWd~~~~~~  446 (479)
                            .+.+||  +++......+|...+.. +.++ |+++++++.|+.++|| +.+|..
T Consensus       239 ~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g~~  294 (347)
T 2gop_A          239 YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWDGEI  294 (347)
T ss_dssp             CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EESSSE
T ss_pred             CccccceEEEEC--CCceEeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcCCce
Confidence                  377777  66665555667778886 8899 7788889999999999 886654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.28  E-value=1.7e-09  Score=99.33  Aligned_cols=165  Identities=10%  Similarity=0.068  Sum_probs=117.1

Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcccCCC-
Q psy8895         224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYNKAPVQPG-  300 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~-  300 (479)
                      ++.++|+|++++  +.++.|..||. +|+.+..+..+. ..+.++.+.++|.++++.+. ++.+..+|.+ ++...... 
T Consensus        41 ~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~  116 (276)
T 3no2_A           41 SVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEF  116 (276)
T ss_dssp             EEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEE
T ss_pred             CeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEec
Confidence            456678898888  45778999998 899998888753 47889999999999998777 6777777753 33221110 


Q ss_pred             --C-CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------CCCCCeEEEEeCCCcEEEEECCCC
Q psy8895         301 --S-MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------TEESHPVITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       301 --~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------~~~~~~l~sgs~d~~v~iwd~~~~  362 (479)
                        . .........+...+++..+++...++.+..|+.....               ......+++++.++.|..+|..++
T Consensus       117 ~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG  196 (276)
T 3no2_A          117 ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESN  196 (276)
T ss_dssp             CCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred             cCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence              0 0011123345668899999999999999988875211               123456777777889999999999


Q ss_pred             eeEEEEccCC------CceEEEEEeCCCcEEEEEcC
Q psy8895         363 KSLCTLTNHK------KSVRSVALHPTLYMFASASP  392 (479)
Q Consensus       363 ~~~~~~~~h~------~~v~~i~~~~~~~~l~s~s~  392 (479)
                      +.+.++..+.      ..+..+...+++.++++.++
T Consensus       197 ~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~  232 (276)
T 3no2_A          197 RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQ  232 (276)
T ss_dssp             CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEEC
T ss_pred             cEEEEecCCCCCCccccccccceEcCCCCEEEEecc
Confidence            9999886432      23678888889888887753

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.25  E-value=5.9e-10  Score=105.26  Aligned_cols=223  Identities=10%  Similarity=0.098  Sum_probs=149.4

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      .|.+++|++++..+++.+.++.++.|   .++....+..+...+.+++|++++.+++++..++.|.+||.++++..... 
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-   82 (333)
T ss_dssp             CCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-
T ss_pred             ccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-
Confidence            45677888888877777888899999   44555667777778899999999998778888999999998765532211 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCC----CeEEEEeCCCCCC-------------------CCCCeEEEEeC------C
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEAD----KTVKLYKEDDSAT-------------------EESHPVITGSH------D  351 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~~-------------------~~~~~l~sgs~------d  351 (479)
                       ......+..+.+++++..+++...+    +.|..|+......                   ++...+++...      .
T Consensus        83 -~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~  161 (333)
T 2dg1_A           83 -VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL  161 (333)
T ss_dssp             -ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             -eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence             1234568899999999887777666    6888887654321                   11223333332      2


Q ss_pred             CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcC-CcEEEEeCCC-CeEEe--------eecCCcceEEEEE
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASP-DNIKQWKCPE-GKFIQ--------NLPGHNAIINSIC  420 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~-d~i~~w~~~~-~~~~~--------~~~~h~~~v~~l~  420 (479)
                      +.|..+|..+++.. .+..+...+..++|+|++. ++++.+. +.|.+|+..+ +....        .+.++ ..+..++
T Consensus       162 ~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~  239 (333)
T 2dg1_A          162 GGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC  239 (333)
T ss_dssp             EEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred             ceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence            45555665544432 2222334578999999987 4455543 4699999853 33221        12233 4678899


Q ss_pred             EcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         421 VNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +++++ ++++...++.|.+||. ++..++.+.
T Consensus       240 ~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~  270 (333)
T 2dg1_A          240 IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQIL  270 (333)
T ss_dssp             EBTTCCEEEEEETTTEEEEECT-TSCEEEEEE
T ss_pred             ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEE
Confidence            99998 5666667899999998 466665553

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.21  E-value=8.8e-08  Score=88.42  Aligned_cols=223  Identities=13%  Similarity=0.073  Sum_probs=153.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~  295 (479)
                      .......++++.++|++.++...++.|.+||.. ++... .+..+...+..+++++++.++++...++.|..+|.. ++.
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~   94 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF   94 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence            445678899999999988888788999999988 65443 223334678999999999887776667889999986 332


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEE
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd  358 (479)
                      .... .......+..+.+++++...++...++.+..++......                 ......++...++.|..+|
T Consensus        95 ~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~  173 (300)
T 2qc5_A           95 TEYP-LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRIT  173 (300)
T ss_dssp             EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred             EEec-CCCCCCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEEC
Confidence            2111 111235688899999888777776677787776542110                 1223344444567888888


Q ss_pred             CCCCeeEE-EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEe-eecCCcceEEEEEEcCCC-EEEEEeCCC
Q psy8895         359 LAAGKSLC-TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQ-NLPGHNAIINSICVNNEG-VLVSGADNG  434 (479)
Q Consensus       359 ~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~-~~~~h~~~v~~l~~~~~~-~l~sg~~dg  434 (479)
                      . +++... ....+...+..+++++++.++++...+ .+..++. +++... .+..+...+.++++++++ .+++...++
T Consensus       174 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~  251 (300)
T 2qc5_A          174 N-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGAN  251 (300)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred             C-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCC
Confidence            8 444332 222344568999999999988887655 5999998 555433 244455678899999988 555555678


Q ss_pred             cEEEEecCCCe
Q psy8895         435 TMCFWDWRTGY  445 (479)
Q Consensus       435 ~i~lWd~~~~~  445 (479)
                      .|..||. ++.
T Consensus       252 ~i~~~~~-~g~  261 (300)
T 2qc5_A          252 QIGRITN-DNT  261 (300)
T ss_dssp             EEEEECT-TSC
T ss_pred             eEEEECC-CCc
Confidence            9999998 453

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.21  E-value=1.5e-07  Score=86.93  Aligned_cols=214  Identities=10%  Similarity=0.048  Sum_probs=139.3

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      +.++++.++|++.++...++.|..+|.. ++... .+......+.++++++++.++++...++.|..+|.. ++..... 
T Consensus        64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-  140 (300)
T 2qc5_A           64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-  140 (300)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE-
T ss_pred             ceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc-
Confidence            4567777888877777667889999987 55432 222234578999999999888777667889999886 3322111 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      .......+..+.+++++...++....+.|..++......                 .+....++...++.|..+|. +++
T Consensus       141 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~  219 (300)
T 2qc5_A          141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE  219 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred             CCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence            111234678899999998666666677788777532100                 12233344445567899988 444


Q ss_pred             eEE-EEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEE-eeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         364 SLC-TLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFI-QNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       364 ~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~-~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      ... .+..+...+.++++++++.++++... +.|..++. +++.. ..+......+.++++++++.|..+... .|..+|
T Consensus       220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~-~i~~~~  297 (300)
T 2qc5_A          220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALKC-KIGKLN  297 (300)
T ss_dssp             EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECSS-EEEEEE
T ss_pred             EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEccC-ceEEeC
Confidence            332 23334567899999999998888765 46999998 45443 224434456788889988855545444 666665


Q ss_pred             c
Q psy8895         441 W  441 (479)
Q Consensus       441 ~  441 (479)
                      .
T Consensus       298 p  298 (300)
T 2qc5_A          298 L  298 (300)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=4.5e-09  Score=95.83  Aligned_cols=178  Identities=12%  Similarity=0.118  Sum_probs=121.2

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      .+++++++|+++++.. ++.|.+||....... .+. .....+..+++++++.++++...++.|.+||..........  
T Consensus        70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--  145 (270)
T 1rwi_B           70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--  145 (270)
T ss_dssp             CCEEECTTCCEEEEET-TTEEEEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--
T ss_pred             ceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--
Confidence            3567788888666665 889999998765443 232 22356899999999988777777889999976543322111  


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCee
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGKS  364 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~~  364 (479)
                      ......+..+++++++...++...++.|..|+......                 .+....++...++.|.+||......
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            11223456788999998777777778899998654211                 1223455555678999999876543


Q ss_pred             EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCe
Q psy8895         365 LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGK  404 (479)
Q Consensus       365 ~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~  404 (479)
                      ......+...+.++++++++.++++...+ .|.+++....+
T Consensus       226 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          226 TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            33222333568999999999988887655 59999876544

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.18  E-value=7.8e-08  Score=92.13  Aligned_cols=217  Identities=13%  Similarity=0.024  Sum_probs=141.0

Q ss_pred             EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895         224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPRHPYLFSCGD--DRT  284 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d~~  284 (479)
                      .++++|||++++.+.          .++.|.++|..+.+.+..+.--       ...-..++++|||++|+.+..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            889999999988876          3678999999998877665422       122357899999999998764  578


Q ss_pred             EEEEECCCCCcccC-CCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCC-----------------------
Q psy8895         285 VKCWDLEYNKAPVQ-PGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDDSAT-----------------------  339 (479)
Q Consensus       285 i~~wd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~~~~-----------------------  339 (479)
                      |.++| ++.+.... .   ....   ++.+.+.+ ..+++.+.|+.+.+++. ....                       
T Consensus       150 v~viD-~t~~~~~~~i---~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~  221 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLL---SSPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQA  221 (373)
T ss_pred             EEEEE-CCCCEEeEEc---CCCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeE
Confidence            99999 87765432 2   1111   12233333 34445556666666655 2111                       


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCe--eEEEEcc----------CCCceEEEEEeCCCcEEEE-Ec----------CCcEE
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGK--SLCTLTN----------HKKSVRSVALHPTLYMFAS-AS----------PDNIK  396 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~----------h~~~v~~i~~~~~~~~l~s-~s----------~d~i~  396 (479)
                      .....++..+..+.+.+.|+....  .+..+.-          .......++++|++..+.. ..          .+.|.
T Consensus       222 ~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~  301 (373)
T 2mad_H          222 NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVT  301 (373)
T ss_pred             ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEE
Confidence            011222333356788888986542  2222211          1122445788998665444 32          13588


Q ss_pred             EEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEE
Q psy8895         397 QWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       397 ~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~  449 (479)
                      +.|..+++.+.+++... ....+.+++|+  .++++. .++.|.++|..+++.+++
T Consensus       302 VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          302 SVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEECCCCEEEEEEECCC-CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            99999999988885432 57889999998  466666 589999999999988766

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.15  E-value=1.9e-08  Score=101.53  Aligned_cols=195  Identities=14%  Similarity=0.050  Sum_probs=138.0

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC--CCCcccCCCCCCCCC
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE--YNKAPVQPGSMDSES  306 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~~  306 (479)
                      +.+.++++...++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+.  +.+....   .....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~---i~~G~  240 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE---IKIGS  240 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE---EECCS
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE---EecCC
Confidence            455677888889999999999999988876433 56789999999999999999999999995  4433221   11223


Q ss_pred             CeEEEEEe----CCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc----------C-
Q psy8895         307 GIFSMTFD----NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN----------H-  371 (479)
Q Consensus       307 ~i~~~~~~----~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~----------h-  371 (479)
                      ....+.++    |++++++++.                        ..++++.++|..+.+++.++.-          | 
T Consensus       241 ~P~~ia~s~~~~pDGk~l~v~n------------------------~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p  296 (567)
T 1qks_A          241 EARSIETSKMEGWEDKYAIAGA------------------------YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHP  296 (567)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEE------------------------EETTEEEEEETTTCCEEEEEECCEECTTTCCEES
T ss_pred             CCceeEEccccCCCCCEEEEEE------------------------ccCCeEEEEECCCCcEEEEEeccccccccccccC
Confidence            45678888    5888775443                        3456777888888777776542          2 


Q ss_pred             CCceEEEEEeCCCcEEEEEcC--CcEEEEeCCCCeEE--eeecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCCCe
Q psy8895         372 KKSVRSVALHPTLYMFASASP--DNIKQWKCPEGKFI--QNLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       372 ~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~~~  445 (479)
                      ...+..+..++++..++..-.  +.|.+.|..+.+.+  ..+ ........+.|++++ + +++...+++|.++|.++++
T Consensus       297 ~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          297 EPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            226788888888665544433  34888888665322  222 223346677899998 4 4555578899999999998


Q ss_pred             EEEEEEE
Q psy8895         446 NFQRLQV  452 (479)
Q Consensus       446 ~~~~~~~  452 (479)
                      .+..+.+
T Consensus       376 l~~~i~v  382 (567)
T 1qks_A          376 LVAIEDT  382 (567)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            8777766

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.13  E-value=1.4e-09  Score=103.70  Aligned_cols=170  Identities=12%  Similarity=0.052  Sum_probs=118.4

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc---------e-EEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGK---------L-KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~---------~-~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      .+..+++++...++++|+.++ +++|+++..+         . ......+.. |..++|  |+.+|+.+ .++.|++||+
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv  113 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL  113 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence            577899999999999999985 5569865332         1 111223556 999999  88898888 8899999998


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      .........  ...+..+..+.+.+                           ..+++++.||++.+||+..+....    
T Consensus       114 ~sl~~~~~~--~~~~~~v~~i~~~~---------------------------p~~av~~~dG~L~v~dl~~~~~~~----  160 (388)
T 1xip_A          114 EELSEFRTV--TSFEKPVFQLKNVN---------------------------NTLVILNSVNDLSALDLRTKSTKQ----  160 (388)
T ss_dssp             SSTTCEEEE--EECSSCEEEEEECS---------------------------SEEEEEETTSEEEEEETTTCCEEE----
T ss_pred             hhhhccCcc--ceeecceeeEEecC---------------------------CCEEEEECCCCEEEEEccCCcccc----
Confidence            654321100  01112233222221                           126778889999999998776543    


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE--Eeee------c---CCcceEEEEEEcCCC-EEEE
Q psy8895         371 HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF--IQNL------P---GHNAIINSICVNNEG-VLVS  429 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~--~~~~------~---~h~~~v~~l~~~~~~-~l~s  429 (479)
                      +...|++++|||++ +.++..++.+.+|+...++.  ..++      .   +|...|.++++.+++ ++++
T Consensus       161 ~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          161 LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEESEEEEEECSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            34589999999999 55566666799998877775  5555      2   477899999999888 5554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.09  E-value=9.2e-08  Score=92.92  Aligned_cols=217  Identities=12%  Similarity=0.138  Sum_probs=145.6

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~  297 (479)
                      .....++++++++++++...++.|++||..++............ . +++++++..|+.+..++  .|..+|........
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~  208 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT  208 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence            34678999999998888888899999999988776555443333 3 89999999888887765  78888875433211


Q ss_pred             CC--CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------C--------C-CCCeEEEEeCC
Q psy8895         298 QP--GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------T--------E-ESHPVITGSHD  351 (479)
Q Consensus       298 ~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------~--------~-~~~~l~sgs~d  351 (479)
                      ..  ........+..++++|++..+..+..++.|..|+.....               .        + ...++++-..+
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence            11  001123456678899965666667777888888864321               0        0 12233444556


Q ss_pred             CcEEEEECCCCeeEEEEccCC---------------CceEEEEEeCCCcEEEEEc-CC-cEEEEeCCCCeEEeeecCC--
Q psy8895         352 CTIRLWDLAAGKSLCTLTNHK---------------KSVRSVALHPTLYMFASAS-PD-NIKQWKCPEGKFIQNLPGH--  412 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~~~~~h~---------------~~v~~i~~~~~~~~l~s~s-~d-~i~~w~~~~~~~~~~~~~h--  412 (479)
                      +.|+.|+....  +..+.++.               .....++++|++.++++.+ .+ .|+.|+..+++. .++.++  
T Consensus       289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~  365 (409)
T 3hrp_A          289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STVAGQVD  365 (409)
T ss_dssp             TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEEEECTT
T ss_pred             CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEEeCCCC
Confidence            77777876543  33333322               3468899999999888877 55 499999877764 333333  


Q ss_pred             -------------cceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         413 -------------NAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       413 -------------~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                                   -.....+++++++ ++++-..+++|+.+++
T Consensus       366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence                         2357889999988 6677777788887764

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.09  E-value=2.3e-08  Score=95.00  Aligned_cols=229  Identities=15%  Similarity=0.098  Sum_probs=143.0

Q ss_pred             EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecCC-------cCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895         224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGHV-------GSVRGLTVSPRHPYLFSCGD--DRT  284 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~l~s~~~--d~~  284 (479)
                      .++++|||++++.++          .++.|.+||..+++.+..+.-..       ..-..++++|||++++.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999887665          36789999999999887764211       13456899999999887753  689


Q ss_pred             EEEEECCCCCcccCCCCCCC-----CCCeEEEEEeCCCCEEEEEeCC-CeEE-----EEeCCCCCC-------CCCCeEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDS-----ESGIFSMTFDNSGSRLITTEAD-KTVK-----LYKEDDSAT-------EESHPVI  346 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d-~~i~-----~~~~~~~~~-------~~~~~l~  346 (479)
                      |.++|+++.+..........     .+.-.-+...++|+.+.....+ +.+.     +++......       .....++
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~  241 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  241 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence            99999988765432210000     0000012334555555544433 3331     111111000       0122345


Q ss_pred             EEeCCCcEEEEECCCCe--eEEEEc---------c-CCCceEEEEEeCCCcEEEEEcC-----------CcEEEEeCCCC
Q psy8895         347 TGSHDCTIRLWDLAAGK--SLCTLT---------N-HKKSVRSVALHPTLYMFASASP-----------DNIKQWKCPEG  403 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~--~~~~~~---------~-h~~~v~~i~~~~~~~~l~s~s~-----------d~i~~w~~~~~  403 (479)
                      -.+.+++|.+.|+....  .+..+.         + .......+++++++..+.....           +.|.+.|..++
T Consensus       242 ~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~  321 (386)
T 3sjl_D          242 WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTG  321 (386)
T ss_dssp             EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCC
Confidence            56778999999997653  222221         0 1123445788888655544321           24889999999


Q ss_pred             eEEeeecCCcceEEEEEEcCCC--EEEE-EeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         404 KFIQNLPGHNAIINSICVNNEG--VLVS-GADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       404 ~~~~~~~~h~~~v~~l~~~~~~--~l~s-g~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.+.++.-- ..++.+.+++|+  +|++ ...++.|.++|..+++.++++++.
T Consensus       322 kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~  373 (386)
T 3sjl_D          322 ERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  373 (386)
T ss_dssp             CEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             eEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC
Confidence            998877532 267889999997  4555 455899999999999888776554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.08  E-value=1.4e-07  Score=87.39  Aligned_cols=214  Identities=13%  Similarity=0.122  Sum_probs=142.7

Q ss_pred             ecCCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q psy8895         215 ISGHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~  293 (479)
                      +..+...-.+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++ . ++.|.+||.+++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            3344556678899985 556777778899999999887653 332 4567999999999996554 3 568999998765


Q ss_pred             CcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeCC---------CeEEEEeCCCCC-----------------CCCCCeE
Q psy8895         294 KAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEAD---------KTVKLYKEDDSA-----------------TEESHPV  345 (479)
Q Consensus       294 ~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~~~~~~~~-----------------~~~~~~l  345 (479)
                      +....  .........+..+.+++++...++....         ....+|..+...                 .++...+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEE
Confidence            43211  1111123457889999999866654321         233455443211                 1223334


Q ss_pred             -EEEeCCCcEEEEEC--CCCee-----EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceE
Q psy8895         346 -ITGSHDCTIRLWDL--AAGKS-----LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAII  416 (479)
Q Consensus       346 -~sgs~d~~v~iwd~--~~~~~-----~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v  416 (479)
                       ++.+.++.|..||+  .++..     +..+..+......+++++++.++++...+ .|..||..+++.+..+..+...+
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~  243 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT  243 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence             55566788999987  34432     22333344567899999999988887655 59999999899988888877789


Q ss_pred             EEEEEc-CCC-EE-EEEeC
Q psy8895         417 NSICVN-NEG-VL-VSGAD  432 (479)
Q Consensus       417 ~~l~~~-~~~-~l-~sg~~  432 (479)
                      ++++|. |++ .| ++...
T Consensus       244 t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          244 TSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             EEEEEESGGGCEEEEEEBC
T ss_pred             eEEEEeCCCCCEEEEEcCC
Confidence            999998 665 44 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.08  E-value=1e-08  Score=107.00  Aligned_cols=223  Identities=13%  Similarity=0.128  Sum_probs=142.3

Q ss_pred             CCCccEEEEEEcCCCcEEEE-----EeCCCeEEEEECCCCceEEE-EecCCcCEEEEEEcCCCCEEEEEECCC-------
Q psy8895         217 GHLGWVRCVAVEPGNEWFAT-----GSADKIIKVWDLATGKLKLS-LTGHVGSVRGLTVSPRHPYLFSCGDDR-------  283 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~s-----gs~d~~i~iWd~~~~~~~~~-~~~h~~~v~~v~~~~~~~~l~s~~~d~-------  283 (479)
                      +|...+..++|+|||++||-     |+....|++||+.+++.+.. +...  ....++|+ |++.|+.++.+.       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence            45667888999999998873     33345799999999986543 2211  12467899 999998887774       


Q ss_pred             ------cEEEEECCCCCccc--CCCCCC-CCCCeEEEEEeCCCCEEEEEeC----CCeEEEEeCCCCCC-----------
Q psy8895         284 ------TVKCWDLEYNKAPV--QPGSMD-SESGIFSMTFDNSGSRLITTEA----DKTVKLYKEDDSAT-----------  339 (479)
Q Consensus       284 ------~i~~wd~~~~~~~~--~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~-----------  339 (479)
                            .|++|++.+.....  ...... +......+.++|++++++....    ...+.+++......           
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                  49999987654311  111111 2334678899999998865443    24788888654310           


Q ss_pred             ------C-CCCeEEEEeCC---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEc-CC---cEEEEeCCCC
Q psy8895         340 ------E-ESHPVITGSHD---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASAS-PD---NIKQWKCPEG  403 (479)
Q Consensus       340 ------~-~~~~l~sgs~d---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s-~d---~i~~w~~~~~  403 (479)
                            . ....++....|   +.|..+|+.++..  ...+..|...+.  .|++++..|+... .+   .+.+|+...+
T Consensus       283 ~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~  360 (693)
T 3iuj_A          283 DVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK  360 (693)
T ss_dssp             CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred             eEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence                  0 11234444444   5788999987654  345555655554  8888877665544 33   3888998754


Q ss_pred             eEEeeec-CCcceEEEEEEcCCC-EEEEEeCC----CcEEEEecCCCe
Q psy8895         404 KFIQNLP-GHNAIINSICVNNEG-VLVSGADN----GTMCFWDWRTGY  445 (479)
Q Consensus       404 ~~~~~~~-~h~~~v~~l~~~~~~-~l~sg~~d----g~i~lWd~~~~~  445 (479)
                      . ...+. .+.+.+..+.+++++ .++....+    +++..||+.+++
T Consensus       361 ~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 R-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             E-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             e-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            4 34443 344567777777776 44433333    789999998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.04  E-value=9.3e-09  Score=108.21  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=100.5

Q ss_pred             CeEEEEECCCCce--EEEEec--CCcCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCC--C-cccCCCCCCCCCCe
Q psy8895         241 KIIKVWDLATGKL--KLSLTG--HVGSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYN--K-APVQPGSMDSESGI  308 (479)
Q Consensus       241 ~~i~iWd~~~~~~--~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~--~-~~~~~~~~~~~~~i  308 (479)
                      ..|.+|++.++..  ...+..  +...+..+.|+|||++|+..+.+     ..|.+||+.++  + .....   ......
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~  319 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQ  319 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSC
T ss_pred             CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCce
Confidence            4588899877652  223333  33358899999999988877644     38999998765  2 21111   112223


Q ss_pred             EEEEEeCCCCEEEEEeCC----CeEEEEeCCCCC-C-----------------CCCCeEEEEeCCCcEEEEECC-CCeeE
Q psy8895         309 FSMTFDNSGSRLITTEAD----KTVKLYKEDDSA-T-----------------EESHPVITGSHDCTIRLWDLA-AGKSL  365 (479)
Q Consensus       309 ~~~~~~~~~~~l~~~~~d----~~i~~~~~~~~~-~-----------------~~~~~l~sgs~d~~v~iwd~~-~~~~~  365 (479)
                      ... +++++..++..+.+    ..|.+|+..... .                 .....+++...|+..+||.+. .++..
T Consensus       320 ~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          320 WDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             EEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCCCCce
Confidence            333 34778887777654    347788765421 0                 012356778888887777554 35556


Q ss_pred             EEEcc-CCCceEEEEEeCCCcEEE-EE-cCC---cEEEEeCCCCeE
Q psy8895         366 CTLTN-HKKSVRSVALHPTLYMFA-SA-SPD---NIKQWKCPEGKF  405 (479)
Q Consensus       366 ~~~~~-h~~~v~~i~~~~~~~~l~-s~-s~d---~i~~w~~~~~~~  405 (479)
                      ..+.. +...+..++++|++..++ +. +..   .+..||..+++.
T Consensus       399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66654 356788999999875333 32 222   488999988774

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.00  E-value=8.1e-08  Score=90.47  Aligned_cols=200  Identities=9%  Similarity=-0.007  Sum_probs=141.0

Q ss_pred             CCCeEEEEECCCCceEEEEe------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEE
Q psy8895         239 ADKIIKVWDLATGKLKLSLT------GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMT  312 (479)
Q Consensus       239 ~d~~i~iWd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~  312 (479)
                      .+++|.++|..+++....+.      ........+++.. ++.+++...++.|.+||.++.+.....   ........++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i---~~~~~p~~i~   90 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRI---TGFTSPRYIH   90 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEE---ECCSSEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEc---CCCCCCcEEE
Confidence            37899999999987654331      1123467788754 445556667899999999877654322   1234577889


Q ss_pred             EeCCCCEEEEEe-CCCeEEEEeCCCCCC---------------C-----CCCeEEEEe--CCCcEEEEECCCCeeEEEEc
Q psy8895         313 FDNSGSRLITTE-ADKTVKLYKEDDSAT---------------E-----ESHPVITGS--HDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       313 ~~~~~~~l~~~~-~d~~i~~~~~~~~~~---------------~-----~~~~l~sgs--~d~~v~iwd~~~~~~~~~~~  369 (479)
                      +++++ .+.++. .++.|.++|......               +     ....++.+.  .+++|.++|..+++.+.++.
T Consensus        91 ~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A           91 FLSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             EEETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             EeCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            98887 455554 889999998764321               0     122344554  48899999999999888876


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCC-----------cEEEEeCCCCeEEeeecCC-cceEEEEEEcCCC-EEEEEeCCCcE
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPD-----------NIKQWKCPEGKFIQNLPGH-NAIINSICVNNEG-VLVSGADNGTM  436 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d-----------~i~~w~~~~~~~~~~~~~h-~~~v~~l~~~~~~-~l~sg~~dg~i  436 (479)
                      .. .....+.++|++.+++++..+           .+.++|..+++....+.-. ......++++|++ .|..+..  .|
T Consensus       170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v  246 (328)
T 3dsm_A          170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI  246 (328)
T ss_dssp             CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SE
T ss_pred             cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EE
Confidence            43 345788999999988887653           5999999999887766532 2367889999976 6665543  99


Q ss_pred             EEEecCCCeE
Q psy8895         437 CFWDWRTGYN  446 (479)
Q Consensus       437 ~lWd~~~~~~  446 (479)
                      .+||..+++.
T Consensus       247 ~~~d~~t~~~  256 (328)
T 3dsm_A          247 WRMPVEADRV  256 (328)
T ss_dssp             EEEETTCSSC
T ss_pred             EEEECCCCce
Confidence            9999988764

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.92  E-value=1.6e-10  Score=111.04  Aligned_cols=188  Identities=12%  Similarity=0.085  Sum_probs=102.5

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeE
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIF  309 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~  309 (479)
                      ++..+++++.|+.|..||..+|+.++.+..  +.+.+..+..++..+++++.|+.|+.||.++++....... .....+ 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~-~~~~~~-   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPF-TIPELV-   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSC-CHHHHH-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeec-cCcccc-
Confidence            577899999999999999999999988876  4555555666777777778999999999976654321100 000000 


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEE
Q psy8895         310 SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFAS  389 (479)
Q Consensus       310 ~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s  389 (479)
                        ...|                      .......+++|+.|+.++.||.++++.+.++..+.    ...++|++..+..
T Consensus        84 --~~sp----------------------~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~  135 (369)
T 2hz6_A           84 --QASP----------------------CRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYL  135 (369)
T ss_dssp             --TTCS----------------------CC-----CCCCEEEEEEEEECCC--------------------------EEE
T ss_pred             --ccCc----------------------eEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEE
Confidence              0000                      00011235567778899999999999888776543    1344566555555


Q ss_pred             EcC-CcEEEEeCCCCeEEeeecCCcceEEEEEEcCC----CEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         390 ASP-DNIKQWKCPEGKFIQNLPGHNAIINSICVNNE----GVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       390 ~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~----~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ++. +.+..||..+|+.+.....+.  ....++.++    +.++.++.||.+..||.++|+.+-+.+
T Consensus       136 ~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          136 GRTEYTITMYDTKTRELRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             EEEEEEEECCCSSSSSCCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EecCCEEEEEECCCCCEEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            554 469999999988755443211  122233332    667788999999999999998765443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.90  E-value=7.5e-08  Score=93.09  Aligned_cols=225  Identities=16%  Similarity=0.108  Sum_probs=142.9

Q ss_pred             EEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCCCCEEEEEEC--CCc
Q psy8895         224 CVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPRHPYLFSCGD--DRT  284 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~~~~l~s~~~--d~~  284 (479)
                      .+.++|||++++.+.          .++.|.++|..+++.+..+.--       ...-..+.++||+++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            799999999887765          4678999999999888776421       122356799999999988764  578


Q ss_pred             EEEEECCCCCcccCCCCCCCC------CCeEEEEEeCCCCEEEEEeCCCeEE-----EEeCCCCC-------CCCCCeEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSE------SGIFSMTFDNSGSRLITTEADKTVK-----LYKEDDSA-------TEESHPVI  346 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~l~~~~~d~~i~-----~~~~~~~~-------~~~~~~l~  346 (479)
                      |.+.|+.+.+...... ....      +.-..+.+.++++.+++...++++.     +++.....       ......++
T Consensus       202 VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~  280 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLV  280 (426)
T ss_dssp             EEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEE
T ss_pred             EEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEE
Confidence            9999998766432211 1000      0011234455555555544444332     12211110       12234455


Q ss_pred             EEeCCCcEEEEECCCCeeE--EEEcc----------CCCceEEEEEeCCCc-EEEEEc----------CCcEEEEeCCCC
Q psy8895         347 TGSHDCTIRLWDLAAGKSL--CTLTN----------HKKSVRSVALHPTLY-MFASAS----------PDNIKQWKCPEG  403 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~--~~~~~----------h~~~v~~i~~~~~~~-~l~s~s----------~d~i~~w~~~~~  403 (479)
                      ..+..+++.+.|+......  .++.-          .......++++|++. ++++..          .+.|.+.|..+.
T Consensus       281 ~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~  360 (426)
T 3c75_H          281 WPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG  360 (426)
T ss_dssp             EEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred             EEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence            5567788999998654321  11110          011122368999865 444432          235999999999


Q ss_pred             eEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEEE
Q psy8895         404 KFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       404 ~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~~  450 (479)
                      +.+.+++... ..+.+.+++|+  .+++.. .++.|.++|..+++.++++
T Consensus       361 kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          361 ERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             CEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             eEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            9998876422 47788999987  566666 5999999999999888765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.89  E-value=5e-07  Score=84.01  Aligned_cols=176  Identities=8%  Similarity=0.110  Sum_probs=114.3

Q ss_pred             cEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEE-Eec----CCcCEEEEEEcCCCCEEEEEECC------------
Q psy8895         221 WVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLS-LTG----HVGSVRGLTVSPRHPYLFSCGDD------------  282 (479)
Q Consensus       221 ~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~-~~~----h~~~v~~v~~~~~~~~l~s~~~d------------  282 (479)
                      .+.+++++++ |+++++.. .+.|.+||.. ++.... ...    ....+.++++++++.++++...+            
T Consensus        72 ~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           72 IPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccccccc
Confidence            3567788888 76555554 4478899988 665432 211    12357899999999887776554            


Q ss_pred             ---CcEEEEECCCCCcccCCCCCCCCCCeEEEEEe----CCCCEEEEE-eCCCeEEEEeCC-CCC---------------
Q psy8895         283 ---RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFD----NSGSRLITT-EADKTVKLYKED-DSA---------------  338 (479)
Q Consensus       283 ---~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~~~~~~-~~~---------------  338 (479)
                         +.|..+|.. ++....   .........++++    ++++.+..+ ..++.|..|+.. ...               
T Consensus       150 ~~~~~l~~~~~~-g~~~~~---~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~  225 (314)
T 1pjx_A          150 EKFGSIYCFTTD-GQMIQV---DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE  225 (314)
T ss_dssp             SSCEEEEEECTT-SCEEEE---EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred             CCCCeEEEECCC-CCEEEe---ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC
Confidence               456666654 222111   0111235678888    888765554 567888888753 110               


Q ss_pred             --------CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeCCC
Q psy8895         339 --------TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKCPE  402 (479)
Q Consensus       339 --------~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~  402 (479)
                              ..+....++...++.|.+||..+++.+..+..+...+.+++++|++. ++++...+ .+..++...
T Consensus       226 ~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          226 GGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence                    01234455666788999999987777667766667899999999998 55555543 588888754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=3.9e-08  Score=93.25  Aligned_cols=211  Identities=11%  Similarity=0.079  Sum_probs=122.5

Q ss_pred             ccEEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEe-------cCCcCEEEEEEcCCCCEEEEEEC-----CCcE
Q psy8895         220 GWVRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLT-------GHVGSVRGLTVSPRHPYLFSCGD-----DRTV  285 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~-----d~~i  285 (479)
                      .....++++++|+.+++...  ++.++||.+.+++. ..+.       +|...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            67889999999999988642  34366776655543 2221       24467899999999876655433     5789


Q ss_pred             EEEECCCCCcccC--C--CCCCCCCCeEEEEEeCCCCEE-EEEe---CCCeEEEEeCCCCCCC-----------------
Q psy8895         286 KCWDLEYNKAPVQ--P--GSMDSESGIFSMTFDNSGSRL-ITTE---ADKTVKLYKEDDSATE-----------------  340 (479)
Q Consensus       286 ~~wd~~~~~~~~~--~--~~~~~~~~i~~~~~~~~~~~l-~~~~---~d~~i~~~~~~~~~~~-----------------  340 (479)
                      .+||+.+++....  .  ........+..+++++++..+ ++..   .++.|.+|+.......                 
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            9999987653211  1  001122345788888765444 4433   4567777776432110                 


Q ss_pred             -CCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCC-----Ce-----EEe--
Q psy8895         341 -ESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE-----GK-----FIQ--  407 (479)
Q Consensus       341 -~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~-----~~-----~~~--  407 (479)
                       +...+.+.+.|++++.|.              ..+..|+++|++..|..+....-++|.+..     +.     ...  
T Consensus       176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  241 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI  241 (343)
T ss_dssp             ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred             ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence             000111222233222221              235789999999766555444323443321     10     000  


Q ss_pred             eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         408 NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       408 ~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      ...++.+....+++++++ ++++...++.|.+||.++|+
T Consensus       242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence            111233345568899888 77778888999999986675

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.87  E-value=3.3e-08  Score=93.97  Aligned_cols=231  Identities=9%  Similarity=-0.019  Sum_probs=142.3

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecC-------CcCEEEEEEcCC
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGH-------VGSVRGLTVSPR  272 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h-------~~~v~~v~~~~~  272 (479)
                      +....+..-..+  .+.++|||++++.+.          .++.|.+||+.+++.+.++...       ...-..++++||
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            334444322334  699999999888776          3689999999999998887533       022457899999


Q ss_pred             CCEEEEEEC--CCcEEE--EECCCCCcccCCCCCCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEeCCC-----CC----
Q psy8895         273 HPYLFSCGD--DRTVKC--WDLEYNKAPVQPGSMDSESGIFSMTFDNSG-SRLITTEADKTVKLYKEDD-----SA----  338 (479)
Q Consensus       273 ~~~l~s~~~--d~~i~~--wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~~~~~~-----~~----  338 (479)
                      |++++.+..  +..+.+  +|+.+ ......   .  ..   ....|++ ..+++.+.|+.+...+...     ..    
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~v---~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~  205 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKS---A--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE-EEEEEC---S--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh-ceEEEC---C--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEE
Confidence            999988764  467888  88865 111110   0  00   0011222 2333344455554444433     00    


Q ss_pred             -------------CCCCCeEEEEeCCCcEEEEECCCCe--eEEEEccC----------CCceEEEEEeCCCcEEE-EEc-
Q psy8895         339 -------------TEESHPVITGSHDCTIRLWDLAAGK--SLCTLTNH----------KKSVRSVALHPTLYMFA-SAS-  391 (479)
Q Consensus       339 -------------~~~~~~l~sgs~d~~v~iwd~~~~~--~~~~~~~h----------~~~v~~i~~~~~~~~l~-s~s-  391 (479)
                                   ......++..+. +++.+.|.....  .+..+.-.          ......++++|++..+. +.. 
T Consensus       206 ~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~  284 (368)
T 1mda_H          206 CTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             eeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence                         111223344444 788888886432  22222110          01112268999876444 433 


Q ss_pred             C--------CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEe-CCCcEEEEecCCCeEEEEEEEe
Q psy8895         392 P--------DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGA-DNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       392 ~--------d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~-~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .        +.+.++|..+++.+.+++... ....+++++|+  .+++.. .+++|.++|..+++.++++++.
T Consensus       285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            2        356799999999988876544 57889999998  466666 5999999999999888776544

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.87  E-value=2.9e-06  Score=79.63  Aligned_cols=208  Identities=11%  Similarity=0.039  Sum_probs=135.5

Q ss_pred             ccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         220 GWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       220 ~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ....+..|+|+ +.++++...++.|..||..+++.. .+. ....+.+++++++++++++. .+ .|.+||.++++....
T Consensus        49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           49 LLGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLH  124 (326)
T ss_dssp             SBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEE
T ss_pred             CCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEE
Confidence            34577889997 456677777899999999887653 232 34579999999999877654 43 499999876553211


Q ss_pred             CCC--CCCCCCeEEEEEeCCCCEEEEEeC------CCeEEEEeCCCCC---------------CCCCCeE-EEEeCCCcE
Q psy8895         299 PGS--MDSESGIFSMTFDNSGSRLITTEA------DKTVKLYKEDDSA---------------TEESHPV-ITGSHDCTI  354 (479)
Q Consensus       299 ~~~--~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~---------------~~~~~~l-~sgs~d~~v  354 (479)
                      ...  ......+..+.+++++...++...      .+.|..++ ....               ..+...+ ++.+.++.|
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            110  011235788999999987665542      13344444 1100               1223334 445567889


Q ss_pred             EEEECC--CC-e-----eEEEEccCCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCCcceEEEEEEc-CC
Q psy8895         355 RLWDLA--AG-K-----SLCTLTNHKKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGHNAIINSICVN-NE  424 (479)
Q Consensus       355 ~iwd~~--~~-~-----~~~~~~~h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-~~  424 (479)
                      .+||+.  ++ +     .+..+.........+++++++.++++... +.|..|+. +++.+..+..+...+.+++|+ ++
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d  282 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD  282 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCC
Confidence            999986  45 2     22333334456788999999998887754 46999998 677777777676779999998 77


Q ss_pred             C-EE-EEEeCC
Q psy8895         425 G-VL-VSGADN  433 (479)
Q Consensus       425 ~-~l-~sg~~d  433 (479)
                      + .| ++...+
T Consensus       283 ~~~L~vt~~~~  293 (326)
T 2ghs_A          283 ASRLLVTSARE  293 (326)
T ss_dssp             SCEEEEEEBCT
T ss_pred             CCEEEEEecCC
Confidence            5 44 444444

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.85  E-value=4.7e-07  Score=84.22  Aligned_cols=217  Identities=11%  Similarity=0.137  Sum_probs=138.5

Q ss_pred             EecCCCccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         214 VISGHLGWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+..+........|+|+|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|..||.+ 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3444566778899999998 6777778899999998 454 34555566778999999999876655556789999875 


Q ss_pred             CCcccCCC--CCCCCCCeEEEEEeCCCCEEEE----EeC-------------CCeEEEEeCCCCC---------------
Q psy8895         293 NKAPVQPG--SMDSESGIFSMTFDNSGSRLIT----TEA-------------DKTVKLYKEDDSA---------------  338 (479)
Q Consensus       293 ~~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~~~~~~~~~---------------  338 (479)
                      ++......  .......+..+.+++++...++    +..             .+.|..++.....               
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~  195 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAF  195 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEE
Confidence            32211100  0011234567888999987775    221             2345555543221               


Q ss_pred             CCCCCeEEEEeCC------CcEEEEECCCCeeEE---EE-ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEee
Q psy8895         339 TEESHPVITGSHD------CTIRLWDLAAGKSLC---TL-TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQN  408 (479)
Q Consensus       339 ~~~~~~l~sgs~d------~~v~iwd~~~~~~~~---~~-~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~  408 (479)
                      .++...++.+...      +.|+.||+..+. +.   .+ .........+++++++.++++. .+.|.+|+. +++.+..
T Consensus       196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~-~g~~~~~  272 (305)
T 3dr2_A          196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDS-DGQLLGH  272 (305)
T ss_dssp             CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECT-TSCEEEE
T ss_pred             cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECC-CCCEEEE
Confidence            1233445555554      689999887654 21   11 1123345678999999977666 556999997 5777666


Q ss_pred             ecCCcceEEEEEEcCCC-EEEEEeCCCcEE
Q psy8895         409 LPGHNAIINSICVNNEG-VLVSGADNGTMC  437 (479)
Q Consensus       409 ~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~  437 (479)
                      +..+. .+..++|++++ .|..++.++..+
T Consensus       273 ~~~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          273 IPTPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            65554 47788898877 666666664433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.83  E-value=2.3e-06  Score=83.05  Aligned_cols=174  Identities=10%  Similarity=0.115  Sum_probs=110.5

Q ss_pred             EEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEE----ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC
Q psy8895         225 VAVEPGNEWFATGSADK--IIKVWDLATGKLKLSL----TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~----~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~  298 (479)
                      ++++++++.|+.+..++  .|.+++...+.....+    ........+++++|+...|+.+..++.|+.||.........
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            56778888888887765  7888887766543333    21345678899999544555577788999999876543221


Q ss_pred             --CCCCCCCCCe-E-EEEEeCC-CCEEEEEeCCCeEEEEeCCCCC------------------------------CCCCC
Q psy8895         299 --PGSMDSESGI-F-SMTFDNS-GSRLITTEADKTVKLYKEDDSA------------------------------TEESH  343 (479)
Q Consensus       299 --~~~~~~~~~i-~-~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~------------------------------~~~~~  343 (479)
                        .........- . .++++|+ +..+++....+.|..|+.+...                              ..+..
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~  335 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN  335 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence              0001111111 3 8999995 5555555667788888754310                              01234


Q ss_pred             eEEEEe-CCCcEEEEECCCCeeEEEEccC---------------CCceEEEEEeCCCcEEEEEcCCc-EEEEe
Q psy8895         344 PVITGS-HDCTIRLWDLAAGKSLCTLTNH---------------KKSVRSVALHPTLYMFASASPDN-IKQWK  399 (479)
Q Consensus       344 ~l~sgs-~d~~v~iwd~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~l~s~s~d~-i~~w~  399 (479)
                      +.++-+ .++.|+.||+.+++ +.++.++               -.....+++++++.++++...+. |+.++
T Consensus       336 lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          336 FYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             EEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred             EEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence            455656 68899999987765 3444343               23578999999988888776653 65544

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=98.82  E-value=1.4e-07  Score=89.95  Aligned_cols=133  Identities=15%  Similarity=0.060  Sum_probs=100.0

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      +.+ |..++|  ++++|+.+ .++.|++||+.+.........|...+.++.+.+.  .++.+..||.|.+||+.......
T Consensus        87 lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~  160 (388)
T 1xip_A           87 IPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ  160 (388)
T ss_dssp             CTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc
Confidence            556 999999  89999998 8899999999887766667778888888776654  38888999999999997654321


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEE------c
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTL------T  369 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~------~  369 (479)
                            ....+.+++|+|.|  ++.                         |..||++++|+...++.  .+++      .
T Consensus       161 ------~~~~Vs~v~WSpkG--~~v-------------------------g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~  207 (388)
T 1xip_A          161 ------LAQNVTSFDVTNSQ--LAV-------------------------LLKDRSFQSFAWRNGEMEKQFEFSLPSELE  207 (388)
T ss_dssp             ------EEESEEEEEECSSE--EEE-------------------------EETTSCEEEEEEETTEEEEEEEECCCHHHH
T ss_pred             ------ccCCceEEEEcCCc--eEE-------------------------EEcCCcEEEEcCCCccccccceecCCcccc
Confidence                  23468999999987  343                         44555666665555543  4455      2


Q ss_pred             ---cCCCceEEEEEeCCCcEEEE
Q psy8895         370 ---NHKKSVRSVALHPTLYMFAS  389 (479)
Q Consensus       370 ---~h~~~v~~i~~~~~~~~l~s  389 (479)
                         +|...|.+|.|.+++..+++
T Consensus       208 ~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          208 ELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cccCCCeeEEEEEEecCCeEEEE
Confidence               36788999999998887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.79  E-value=6.3e-07  Score=85.13  Aligned_cols=225  Identities=12%  Similarity=0.076  Sum_probs=149.3

Q ss_pred             cCCCcEEEEEeC-----CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEECCC
Q psy8895         228 EPGNEWFATGSA-----DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKCWDLEY  292 (479)
Q Consensus       228 ~~~g~~l~sgs~-----d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~wd~~~  292 (479)
                      .|+++.++....     ++.|.+.|..+++.+..+..-..+ . ++++||+++++.+.          .++.|.+||..+
T Consensus        41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t  118 (386)
T 3sjl_D           41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT  118 (386)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence            578888777665     679999999999998888755555 4 99999999887664          367899999987


Q ss_pred             CCcccCCCCC-----CCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCC--------------CCCCeEEEEeCC
Q psy8895         293 NKAPVQPGSM-----DSESGIFSMTFDNSGSRLITTEA--DKTVKLYKEDDSAT--------------EESHPVITGSHD  351 (479)
Q Consensus       293 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~--------------~~~~~l~sgs~d  351 (479)
                      .+........     ........+.++|+++++.++..  ++.+.++|......              .....+++.+.|
T Consensus       119 ~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~D  198 (386)
T 3sjl_D          119 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRD  198 (386)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETT
T ss_pred             CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCC
Confidence            7643221000     00123456899999999998864  68899999876432              123456788899


Q ss_pred             CcEEEEECCC-CeeEEEEccCC----Cce-EEEEEe-CCCcEEEEEcCCcEEEEeCCCCe--EEeeec---------C-C
Q psy8895         352 CTIRLWDLAA-GKSLCTLTNHK----KSV-RSVALH-PTLYMFASASPDNIKQWKCPEGK--FIQNLP---------G-H  412 (479)
Q Consensus       352 ~~v~iwd~~~-~~~~~~~~~h~----~~v-~~i~~~-~~~~~l~s~s~d~i~~w~~~~~~--~~~~~~---------~-h  412 (479)
                      |++.+.++.. ++...+...+.    ..+ ...+|. ++++++..+..+.+.+.|..+..  ....+.         + .
T Consensus       199 G~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~  278 (386)
T 3sjl_D          199 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR  278 (386)
T ss_dssp             SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred             CCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceecccccccccccc
Confidence            9999999986 55433222121    122 123554 67876666666679999986553  333221         1 1


Q ss_pred             cceEEEEEEcCCC-EEEEEeC----------CCcEEEEecCCCeEEEEEEEeE
Q psy8895         413 NAIINSICVNNEG-VLVSGAD----------NGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~~----------dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      .+....+++++++ .+.....          ..+|-+.|.+|++.++++.+..
T Consensus       279 p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~  331 (386)
T 3sjl_D          279 PGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH  331 (386)
T ss_dssp             ECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred             CCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC
Confidence            1222346678776 5444321          2579999999999999887653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.78  E-value=1.2e-05  Score=76.88  Aligned_cols=222  Identities=8%  Similarity=-0.059  Sum_probs=138.8

Q ss_pred             cCCCcEEEEEeC--CC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEEEECCC
Q psy8895         228 EPGNEWFATGSA--DK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKCWDLEY  292 (479)
Q Consensus       228 ~~~g~~l~sgs~--d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~wd~~~  292 (479)
                      .|++++++....  ..   +|.++|..+++.+..+..-..+  .++++||+++++.+.          .++.|.+||..+
T Consensus        29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            356766665543  22   8899999999988777654444  899999999988775          367899999976


Q ss_pred             CCcccCCCCC-----CCCCCeEEEEEeCCCCEEEEEeC--CCeEEEEeCCCCCCC---------------CCCeEEEEeC
Q psy8895         293 NKAPVQPGSM-----DSESGIFSMTFDNSGSRLITTEA--DKTVKLYKEDDSATE---------------ESHPVITGSH  350 (479)
Q Consensus       293 ~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~~~~~~~~~~---------------~~~~l~sgs~  350 (479)
                      .+........     ........+.++|++++++++..  ++.|.++| ......               ....+++.+.
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  185 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCA  185 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcC
Confidence            5443211000     00123457899999999998874  47899998 654311               0123456668


Q ss_pred             CCcEEEEECCCCeeEEEEc-----cCCCc-eEEEEEeCCC-cEEEEEcCCcEEEEeCCCCe--EEeeecC----------
Q psy8895         351 DCTIRLWDLAAGKSLCTLT-----NHKKS-VRSVALHPTL-YMFASASPDNIKQWKCPEGK--FIQNLPG----------  411 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~-----~h~~~-v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~--~~~~~~~----------  411 (479)
                      |+++.++|. +++.+....     ....+ .....+.+++ .++.....+.+.+.|...+.  .+..+.-          
T Consensus       186 dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~  264 (373)
T 2mad_H          186 QGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW  264 (373)
T ss_pred             CCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence            999999999 777664321     11111 1223455543 33444444567778875442  2222211          


Q ss_pred             CcceEEEEEEcCCC-EEEEEeC----------CCcEEEEecCCCeEEEEEEEe
Q psy8895         412 HNAIINSICVNNEG-VLVSGAD----------NGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       412 h~~~v~~l~~~~~~-~l~sg~~----------dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .......+.+++++ .+.....          ++.|.+.|..+++.++++.+.
T Consensus       265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g  317 (373)
T 2mad_H          265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG  317 (373)
T ss_pred             ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC
Confidence            11223446788887 5544332          357999999999998888654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.77  E-value=2.7e-07  Score=95.63  Aligned_cols=221  Identities=14%  Similarity=0.116  Sum_probs=141.2

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecC-C----cCEEEEEEcCCCCEEEEEEC------CCcEEEEECCCCCcccCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGH-V----GSVRGLTVSPRHPYLFSCGD------DRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h-~----~~v~~v~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~  299 (479)
                      +..++.++.|+.|..+|..+|+.+..+..+ .    ..+.+.-...++ .++.++.      ++.|+.+|.++++.....
T Consensus       128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~  206 (677)
T 1kb0_A          128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRW  206 (677)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECC-EEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence            567888899999999999999999888765 2    112111111133 4444432      689999999887754221


Q ss_pred             CCCCC------------------------------CCCeEEEEEeCCCCEEEEEeCCC-------------------eEE
Q psy8895         300 GSMDS------------------------------ESGIFSMTFDNSGSRLITTEADK-------------------TVK  330 (479)
Q Consensus       300 ~~~~~------------------------------~~~i~~~~~~~~~~~l~~~~~d~-------------------~i~  330 (479)
                      .....                              ......+++++.+..++.++.++                   .|.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            11000                              00112467788888887776553                   355


Q ss_pred             EEeCCCCCC--------C------------------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC---------
Q psy8895         331 LYKEDDSAT--------E------------------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK---------  372 (479)
Q Consensus       331 ~~~~~~~~~--------~------------------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~---------  372 (479)
                      -+|.++...        .                  +.   ..++.++.+|.++++|.++++.+..++...         
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            555443211        0                  11   357778899999999999999987764221         


Q ss_pred             --Cce------------------------EEEEEeCCCcEEEEEcC----------------------------------
Q psy8895         373 --KSV------------------------RSVALHPTLYMFASASP----------------------------------  392 (479)
Q Consensus       373 --~~v------------------------~~i~~~~~~~~l~s~s~----------------------------------  392 (479)
                        ..+                        ..++++|+..++.....                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence              011                        14688898766654321                                  


Q ss_pred             ----------CcEEEEeCCCCeEEeeecCCcceEEEEEE-cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         393 ----------DNIKQWKCPEGKFIQNLPGHNAIINSICV-NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       393 ----------d~i~~w~~~~~~~~~~~~~h~~~v~~l~~-~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                                +.+..||..+++.+-..+... .+....+ ..++.++.++.||.+++||.+||+.+.++++.
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~  517 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCC
Confidence                      348889999999876654322 2222223 34568888999999999999999999877654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.74  E-value=1.1e-06  Score=91.46  Aligned_cols=159  Identities=13%  Similarity=0.127  Sum_probs=90.6

Q ss_pred             CCccEEEEEEcCCCcEEEEEeC----CCeEEEEECCCCc-eEEEEecCCcCEEEEEEcCCCCEEE-EEECC---CcEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSA----DKIIKVWDLATGK-LKLSLTGHVGSVRGLTVSPRHPYLF-SCGDD---RTVKCW  288 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~----d~~i~iWd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d---~~i~~w  288 (479)
                      |...+..+.++|||++|+....    +..|.++|+.++. ....+..+....... +++++..++ ....+   +.|..+
T Consensus       232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~  310 (693)
T 3iuj_A          232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV  310 (693)
T ss_dssp             GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred             CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence            3445678899999998754332    2589999998763 344556666555554 556666554 44333   578889


Q ss_pred             ECCCCCcc-cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC--cEEEEECCCCeeE
Q psy8895         289 DLEYNKAP-VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC--TIRLWDLAAGKSL  365 (479)
Q Consensus       289 d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~--~v~iwd~~~~~~~  365 (479)
                      |+...... ... ...+...+.  .++++++.++...                        ..++  .|++||+..+ ..
T Consensus       311 d~~~~~~~~~~~-l~~~~~~~~--~~s~~g~~lv~~~------------------------~~~g~~~l~~~d~~g~-~~  362 (693)
T 3iuj_A          311 DAANPGPAHWRD-LIPERQQVL--TVHSGSGYLFAEY------------------------MVDATARVEQFDYEGK-RV  362 (693)
T ss_dssp             ETTSCCGGGCEE-EECCCSSCE--EEEEETTEEEEEE------------------------EETTEEEEEEECTTSC-EE
T ss_pred             eCCCCCccccEE-EecCCCCEE--EEEEECCEEEEEE------------------------EECCeeEEEEEECCCC-ee
Confidence            98765431 000 011222232  5666666554332                        2222  4677777643 33


Q ss_pred             EEEc-cCCCceEEEEEeCCCcEE-EEEcC----CcEEEEeCCCCeE
Q psy8895         366 CTLT-NHKKSVRSVALHPTLYMF-ASASP----DNIKQWKCPEGKF  405 (479)
Q Consensus       366 ~~~~-~h~~~v~~i~~~~~~~~l-~s~s~----d~i~~w~~~~~~~  405 (479)
                      ..+. .....+..+.+++++..+ .+.+.    ..+..||..+++.
T Consensus       363 ~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~  408 (693)
T 3iuj_A          363 REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI  408 (693)
T ss_dssp             EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred             EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence            4443 234567777777776533 33332    3588888877654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.73  E-value=6.4e-07  Score=92.95  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=140.4

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecC--CcCEEEEEEcC---CCCEEEEEE-----CCCcEEEEECCCCCcccCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGH--VGSVRGLTVSP---RHPYLFSCG-----DDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~---~~~~l~s~~-----~d~~i~~wd~~~~~~~~~~~  300 (479)
                      +..++.++.|+.|..+|.++|+.+..+...  ......+..+|   ++..++..+     .++.|..||.++++......
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  200 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY  200 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence            557888889999999999999998877642  11101111111   443333222     36899999998877543211


Q ss_pred             CCC--C---------------------------CCCeEEEEEeCCCCEEEEEeCCCe-------------------EEEE
Q psy8895         301 SMD--S---------------------------ESGIFSMTFDNSGSRLITTEADKT-------------------VKLY  332 (479)
Q Consensus       301 ~~~--~---------------------------~~~i~~~~~~~~~~~l~~~~~d~~-------------------i~~~  332 (479)
                      ...  .                           ......+.+++....++.++.++.                   |.-+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            000  0                           000124678888888888776653                   6666


Q ss_pred             eCCCCCC---------------C-----------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC-C---------
Q psy8895         333 KEDDSAT---------------E-----------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK-K---------  373 (479)
Q Consensus       333 ~~~~~~~---------------~-----------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~---------  373 (479)
                      |.++.+.               .           +.   ..++.++.+|.++++|.++++.+...+... .         
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            6554321               0           01   146678899999999999999875432110 0         


Q ss_pred             -----------------------------ceEEEEEeCCCcEEEEEc---------------------------------
Q psy8895         374 -----------------------------SVRSVALHPTLYMFASAS---------------------------------  391 (479)
Q Consensus       374 -----------------------------~v~~i~~~~~~~~l~s~s---------------------------------  391 (479)
                                                   .-..++++|+..++....                                 
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                                         001268888766655431                                 


Q ss_pred             -------------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         392 -------------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       392 -------------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                                   .+.+..||..+|+.+-..+.+...........++.++.|+.||.++.||.+||+.+-++++.
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~  515 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA  515 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence                         13488899999998776654432222222345668889999999999999999998777654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.68  E-value=1.2e-05  Score=77.63  Aligned_cols=180  Identities=12%  Similarity=0.108  Sum_probs=113.1

Q ss_pred             EEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC-CEEEEEECCCcEEEEECCCCCcccC---
Q psy8895         225 VAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVKCWDLEYNKAPVQ---  298 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~~~---  298 (479)
                      ++|+|||++++.+..  ++.|.+.|+.+++.+..+.--.  .  ....|++ +.+++.+.||++.+.+...++....   
T Consensus       182 ~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~  257 (426)
T 3c75_H          182 NALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE  257 (426)
T ss_dssp             SEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred             EEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence            478899999988774  5789999999999887776321  1  2223322 3445556677766666633322100   


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCCeEEEEe
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESHPVITGS  349 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~~l~sgs  349 (479)
                      ............+.+.+++..++..+..+.+.+.|.....                             ..+...++...
T Consensus       258 ~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~  337 (426)
T 3c75_H          258 VFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV  337 (426)
T ss_dssp             CCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred             eeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence            0000000001124567777776666677777777753210                             01123344432


Q ss_pred             C----------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEc--CCcEEEEeCCCCeEEeee
Q psy8895         350 H----------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASAS--PDNIKQWKCPEGKFIQNL  409 (479)
Q Consensus       350 ~----------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s--~d~i~~w~~~~~~~~~~~  409 (479)
                      .          +++|.+.|+.+.+.+.++.-. .....++|+||++ ++.++.  ++.|.++|..+++.++++
T Consensus       338 ~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          338 DQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            1          357999999999999988632 2478999999987 666665  346999999999999886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.66  E-value=7.4e-06  Score=78.41  Aligned_cols=215  Identities=11%  Similarity=0.073  Sum_probs=136.7

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCC---
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSES---  306 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~---  306 (479)
                      ++..++.++.++.|..+|..+|+.++............... + ..++.++.++.|..+|.++++............   
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~  179 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR  179 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence            35677778899999999999999887776543221112222 3 367778889999999998776442211100000   


Q ss_pred             CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCcEEEEECC
Q psy8895         307 GIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------EESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       307 ~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      ........  +..++.+..++.+..++..+...                          .....++.++.++.+..+|.+
T Consensus       180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETT
T ss_pred             CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC
Confidence            00011111  34566666677776666543210                          012346778889999999999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC-CcceEEEEEEcCCCEEEEEeCCCcEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPG-HNAIINSICVNNEGVLVSGADNGTMCFW  439 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~~~~~l~sg~~dg~i~lW  439 (479)
                      +++.+.....  .....+... ++.++++..++.+..+|..+++.+..... ....+....+ .++.|+.++.+|.+.++
T Consensus       258 tG~~~w~~~~--~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~  333 (376)
T 3q7m_A          258 SGQIMWKREL--GSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWI  333 (376)
T ss_dssp             TCCEEEEECC--CCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEE
T ss_pred             CCcEEeeccC--CCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEE
Confidence            9998877642  234445544 55666666666899999999988765542 2222222222 25688888999999999


Q ss_pred             ecCCCeEEEEEEE
Q psy8895         440 DWRTGYNFQRLQV  452 (479)
Q Consensus       440 d~~~~~~~~~~~~  452 (479)
                      |.++|+.+.+.+.
T Consensus       334 d~~tG~~~~~~~~  346 (376)
T 3q7m_A          334 NVEDGRFVAQQKV  346 (376)
T ss_dssp             ETTTCCEEEEEEC
T ss_pred             ECCCCcEEEEEec
Confidence            9999988776654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.60  E-value=1.1e-05  Score=74.72  Aligned_cols=170  Identities=11%  Similarity=0.076  Sum_probs=105.3

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEE----EEC------------
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFS----CGD------------  281 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s----~~~------------  281 (479)
                      +..++++++|+++++...++.|.+|+.. ++........    ...+..++++++|.+++|    |..            
T Consensus        88 ~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~  166 (305)
T 3dr2_A           88 TNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPEL  166 (305)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSS
T ss_pred             cceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCcccccccccccccc
Confidence            4567788888877766666788899876 5543221111    134668999999998886    321            


Q ss_pred             -CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEeCCCCCC---------------
Q psy8895         282 -DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD------KTVKLYKEDDSAT---------------  339 (479)
Q Consensus       282 -d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~~---------------  339 (479)
                       .+.|..+|..+++.....    .......++|+|+++.+..+...      +.|..|+......               
T Consensus       167 ~~~~v~~~d~~~g~~~~~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pd  242 (305)
T 3dr2_A          167 AHHSVYRLPPDGSPLQRMA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPD  242 (305)
T ss_dssp             SCEEEEEECSSSCCCEEEE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCC
T ss_pred             CCCeEEEEcCCCCcEEEEe----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCC
Confidence             245777776544332111    12345678999999988777655      6788887542110               


Q ss_pred             ----CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEe
Q psy8895         340 ----EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWK  399 (479)
Q Consensus       340 ----~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~  399 (479)
                          .....+..+..+ .|.+||. .++.+..+..+. .+..++|+|++..|..++.+.+...+
T Consensus       243 gi~~d~~G~lwv~~~~-gv~~~~~-~g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~  303 (305)
T 3dr2_A          243 GFCVDRGGWLWSSSGT-GVCVFDS-DGQLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP  303 (305)
T ss_dssp             SEEECTTSCEEECCSS-EEEEECT-TSCEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred             eEEECCCCCEEEecCC-cEEEECC-CCCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence                011124444444 4899997 466777766554 58899999887655555556554433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.58  E-value=3.1e-05  Score=74.06  Aligned_cols=210  Identities=12%  Similarity=0.112  Sum_probs=132.8

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCC---------cCEE-EEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV---------GSVR-GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~---------~~v~-~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      +..++.++.++.|..+|..+|+.++.+....         ..+. ....  ++..++.++.++.|..+|.++++......
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            5677888889999999999999887766421         2232 2233  34467778899999999998776542211


Q ss_pred             CCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------CCCCeEEEEeCCCcEEEEEC
Q psy8895         301 SMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------EESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       301 ~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------~~~~~l~sgs~d~~v~iwd~  359 (479)
                      ... .....   ..  .+..+++++.++.+..++..+...                    .....++.++.++.+..+|.
T Consensus       131 ~~~~~~~~p---~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~  205 (376)
T 3q7m_A          131 VAGEALSRP---VV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLM  205 (376)
T ss_dssp             CSSCCCSCC---EE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEECCTTTEEEEEET
T ss_pred             CCCceEcCC---EE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEEcCCCEEEEEEC
Confidence            110 01111   11  134677777777777777543321                    01235677888999999999


Q ss_pred             CCCeeEEEEccCCCc----------eEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEE
Q psy8895         360 AAGKSLCTLTNHKKS----------VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS  429 (479)
Q Consensus       360 ~~~~~~~~~~~h~~~----------v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~s  429 (479)
                      .+++.+.........          +.......++.+++++.++.+..+|..+|+.+......  ....+... ++.+..
T Consensus       206 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~-~~~l~~  282 (376)
T 3q7m_A          206 EQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG--SVNDFIVD-GNRIYL  282 (376)
T ss_dssp             TTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC--CEEEEEEE-TTEEEE
T ss_pred             CCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC--CCCCceEE-CCEEEE
Confidence            999988776432110          10110111455566555667999999999887655432  23334433 567777


Q ss_pred             EeCCCcEEEEecCCCeEEEEE
Q psy8895         430 GADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       430 g~~dg~i~lWd~~~~~~~~~~  450 (479)
                      ++.++.+..+|.++|+.+-+.
T Consensus       283 ~~~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          283 VDQNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             EETTCCEEEEETTTCCEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEee
Confidence            888999999999999876443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.55  E-value=4.6e-08  Score=93.72  Aligned_cols=204  Identities=12%  Similarity=0.018  Sum_probs=102.2

Q ss_pred             CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC-EEE-EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCC
Q psy8895         230 GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS-VRG-LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG  307 (479)
Q Consensus       230 ~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~-v~~-v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  307 (479)
                      ++..+++++.|+.|..||.++|+.+..+..+... +.+ ..+. ++..+++++.|+.++.||.++++.......   .. 
T Consensus        48 ~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-  122 (369)
T 2hz6_A           48 EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-  122 (369)
T ss_dssp             --CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------
T ss_pred             CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-
Confidence            3556666778999999999998877666543211 100 0111 234667788899999999988765433211   11 


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------CCC-----CeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------EES-----HPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------~~~-----~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                        ...+.|.+..+++++.++.+..||..+...             ...     ..++.++.|+.++.||.++++.+.+..
T Consensus       123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          123 --ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             ------------EEEEEEEEEEECCCSSSSSCCCEEEEEEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             --cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecccccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence              123345777888888889999888765432             011     467889999999999999999988876


Q ss_pred             cCCCceEEEEEeCCCcEEEE---EcCCcEEEEeCCCCe----EEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         370 NHKKSVRSVALHPTLYMFAS---ASPDNIKQWKCPEGK----FIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s---~s~d~i~~w~~~~~~----~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      -....+....+++++...+.   ..++.+..+|..+|+    .+-...... .+.+.. -.++.|+.++.||.+...+..
T Consensus       201 ~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~-~~~sp~-~~~g~lyv~~~~G~l~al~~~  278 (369)
T 2hz6_A          201 YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPK-ETEAKS-KLTPTLYVGKYSTSLYASPSM  278 (369)
T ss_dssp             CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCC-HHHHHH-HSEEEECBEECSSCEECCEEE
T ss_pred             CCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccCc-cccccc-cccceEEEecccCCEEecCcc
Confidence            33322333445556643211   111223334443443    221111000 010000 124567778888888888765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.51  E-value=2e-06  Score=81.40  Aligned_cols=219  Identities=11%  Similarity=0.044  Sum_probs=120.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeC-----CCeEEEEECCCCceEEEEecC------CcCEEEEEEcCCCCEE-EEEE---C
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSA-----DKIIKVWDLATGKLKLSLTGH------VGSVRGLTVSPRHPYL-FSCG---D  281 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~-----d~~i~iWd~~~~~~~~~~~~h------~~~v~~v~~~~~~~~l-~s~~---~  281 (479)
                      +|...+.+++++++|+++++-..     +..|.+||+.+++.+..+...      ......+++++++..+ ++-.   .
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~  143 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD  143 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence            35567899999999987776544     578999999999876665432      2346889999864444 5544   6


Q ss_pred             CCcEEEEECCCCCcccCCC---CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCC---CCCCCCCeEEEEeCCC-cE
Q psy8895         282 DRTVKCWDLEYNKAPVQPG---SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDD---SATEESHPVITGSHDC-TI  354 (479)
Q Consensus       282 d~~i~~wd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~---~~~~~~~~l~sgs~d~-~v  354 (479)
                      ++.|.+||+.+++......   ......    ..+..++..+.+...+++++.|....   ...++...|+.+..++ .+
T Consensus       144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~----~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l  219 (343)
T 2qe8_A          144 KAALIRVDLQTGLAARVLQGYPGIAPED----IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSM  219 (343)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTSCCS----CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEE
T ss_pred             CCeEEEEECCCCCEEEEecCCCcccccc----cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeE
Confidence            7899999987654321110   000000    11112233333333344433332110   0011222333333333 22


Q ss_pred             EEEECC---CC-----eeEE--EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC-CcceEEEEEEc
Q psy8895         355 RLWDLA---AG-----KSLC--TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG-HNAIINSICVN  422 (479)
Q Consensus       355 ~iwd~~---~~-----~~~~--~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~-h~~~v~~l~~~  422 (479)
                      ..++..   .+     +...  ...++......+++++++.++++...+ .|.+||..+++....... +...+..+++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          220 YRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             EEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             EEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            222211   00     0000  111233345678999999999888766 499999856765333222 24568899999


Q ss_pred             CCC-EEEEEeCCCcEEEE
Q psy8895         423 NEG-VLVSGADNGTMCFW  439 (479)
Q Consensus       423 ~~~-~l~sg~~dg~i~lW  439 (479)
                      +++ ++++.+..+.+.+|
T Consensus       300 ~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          300 SDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             TTSCEEEEECCGGGSGGG
T ss_pred             CCCcEEEEeCcccccccc
Confidence            888 56666555455444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.51  E-value=5.2e-05  Score=69.94  Aligned_cols=188  Identities=13%  Similarity=0.154  Sum_probs=113.8

Q ss_pred             CCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC
Q psy8895         260 HVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       260 h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  338 (479)
                      ....-.+..|+++.. .+++...++.|..||..+.....    ......+..+.+++++..++. . +..|..|+.....
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS   84 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE----EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE----EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence            333456788888654 45555678899999987654321    112356889999999995444 4 4577778765321


Q ss_pred             C---------------------CCCCeEEEEeC---------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE-
Q psy8895         339 T---------------------EESHPVITGSH---------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF-  387 (479)
Q Consensus       339 ~---------------------~~~~~l~sgs~---------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-  387 (479)
                      .                     .+....++...         ...-.+|.+.....+..+..+....+.++|+|++..+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~ly  164 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFY  164 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEE
Confidence            1                     11122222211         1223444443222222222223346789999998744 


Q ss_pred             EEEcC-CcEEEEeC--CCCeE-----EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         388 ASASP-DNIKQWKC--PEGKF-----IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       388 ~s~s~-d~i~~w~~--~~~~~-----~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++.+. +.|..|+.  .++..     ...+..+.+....++++++| +.++...++.|..||.++|+.+..+.+.
T Consensus       165 v~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          165 YIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             EecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            55554 45888886  45543     22333345678889999988 5666667788999999999888776543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.49  E-value=8.2e-06  Score=77.45  Aligned_cols=176  Identities=7%  Similarity=-0.014  Sum_probs=105.3

Q ss_pred             EEEcCCCcEEEEEeC--CCeEEE--EECCCCceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCC-----CC
Q psy8895         225 VAVEPGNEWFATGSA--DKIIKV--WDLATGKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEY-----NK  294 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~--d~~i~i--Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~-----~~  294 (479)
                      ++++|||++++.+..  +..+.+  +|+.+   +..+.-- +.   ..+.|++. .+++.+.|+.+.+.|++.     ++
T Consensus       129 ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          129 IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             EEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             EEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            578899999888875  467888  99877   3333211 11   11233332 344556788888888875     22


Q ss_pred             cccCC-CCCC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCCCC
Q psy8895         295 APVQP-GSMD-SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------------TEESH  343 (479)
Q Consensus       295 ~~~~~-~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------------~~~~~  343 (479)
                      ..... .... ...+.   . .+++..++..+. +.+.+.|.....                             ..+..
T Consensus       202 v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~  276 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD  276 (368)
T ss_dssp             CCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred             EEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence            11100 0000 11122   2 455555544444 677666653210                             11233


Q ss_pred             eEEEEeC---------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEc--CCcEEEEeCCCCeEEeeecC
Q psy8895         344 PVITGSH---------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASAS--PDNIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       344 ~l~sgs~---------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s--~d~i~~w~~~~~~~~~~~~~  411 (479)
                      .++.+..         +..+.++|+.+.+.+.++.... ....++|+||++ ++++..  ++.+.++|..+++.+++++.
T Consensus       277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEEC
Confidence            4544332         2356699999999988876433 578999999986 566665  45699999999999998875


Q ss_pred             Cc
Q psy8895         412 HN  413 (479)
Q Consensus       412 h~  413 (479)
                      ..
T Consensus       356 g~  357 (368)
T 1mda_H          356 DK  357 (368)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.45  E-value=2.7e-06  Score=79.62  Aligned_cols=209  Identities=12%  Similarity=0.108  Sum_probs=136.2

Q ss_pred             EEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895         226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      .+..+| .+..++.++.|..|| .+++....+......+.++...+++..+ .++.+  |..+|. +++.........  
T Consensus        26 ~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~--l~~~d~-~g~~~~~~~~~~--   97 (330)
T 3hxj_A           26 ILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIY-FGSDK--VYAINP-DGTEKWRFDTKK--   97 (330)
T ss_dssp             EECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEEC-CSSCE--EEEECC-CGGGGGGSCC----
T ss_pred             eEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEE-EecCc--EEEECC-CCcEEEEEECCC--
Confidence            343444 456667788899999 8888766655444556777777777543 34443  888885 333322211111  


Q ss_pred             CCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         306 SGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      .........  +..+..++.++.+..++.. ...                .....+..++.++.+..+|.. ++.+..+.
T Consensus        98 ~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~  173 (330)
T 3hxj_A           98 AIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFK  173 (330)
T ss_dssp             ---CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred             CcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEe
Confidence            111112222  5567777777777777754 110                113457778888999999998 77777766


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      .....+.++.+.+++.++++.  +.+..+| .+++...........+.+++..+++.|..++.++.+..+| .+|..+..
T Consensus       174 ~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~-~~g~~~~~  249 (330)
T 3hxj_A          174 TNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAIN-PDGTEKWR  249 (330)
T ss_dssp             CSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEEC-TTSCEEEE
T ss_pred             cCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEEC-CCCCEeEE
Confidence            556667788888888877766  7799999 7777766666555667788888888777788888888887 45655544


Q ss_pred             E
Q psy8895         450 L  450 (479)
Q Consensus       450 ~  450 (479)
                      +
T Consensus       250 ~  250 (330)
T 3hxj_A          250 F  250 (330)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.41  E-value=0.00027  Score=63.38  Aligned_cols=190  Identities=12%  Similarity=0.051  Sum_probs=124.5

Q ss_pred             EEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895         222 VRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ...+.|++++.++++.+.  ++.|.+.|+.+++.+..+.--. .....++++  +..++ +.-.++.+.++|.++.+...
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            468999998766666653  5799999999999887765221 233455665  33444 44467899999987655432


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-----C
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-----K  372 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-----~  372 (479)
                      ........+  +.+  .++++.                         ++.+..+++|.++|..+.+.+.++.-.     -
T Consensus       101 ~i~~g~~~g--~gl--t~Dg~~-------------------------l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A          101 NFTHQMKDG--WGL--ATDGKI-------------------------LYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             EEECCSSSC--CEE--EECSSS-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             EEECCCCCe--EEE--EECCCE-------------------------EEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence            211000111  112  222322                         333345677888888888777776521     1


Q ss_pred             CceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCC-------------cceEEEEEEcCCC--EEEEEeCCCcE
Q psy8895         373 KSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGH-------------NAIINSICVNNEG--VLVSGADNGTM  436 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~--~l~sg~~dg~i  436 (479)
                      ..++.+.+. ++.+++.... +.|.+-|..+++.+..+.-.             ....+.+++++++  .++++...+++
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v  230 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKL  230 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEE
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeE
Confidence            236778888 6778877754 46999999999988877532             1367899999887  67888888888


Q ss_pred             EEEecCC
Q psy8895         437 CFWDWRT  443 (479)
Q Consensus       437 ~lWd~~~  443 (479)
                      ..-++.+
T Consensus       231 ~~i~l~~  237 (266)
T 2iwa_A          231 FEIKLHL  237 (266)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            8777654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.40  E-value=1.6e-05  Score=74.37  Aligned_cols=203  Identities=12%  Similarity=0.094  Sum_probs=131.8

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEE
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFS  310 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~  310 (479)
                      +..+..++.++.+..+|.. ++...........+.++...+++. +..++.++.|..+|.+ ++......  .....+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~--~~~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK--TNDAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE--CSSCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe--cCCCceee
Confidence            4557778888999999988 877777766655666777777776 4556778899999987 44321110  01122334


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEeCCCC--------C------C-CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         311 MTFDNSGSRLITTEADKTVKLYKEDDS--------A------T-EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       311 ~~~~~~~~~l~~~~~d~~i~~~~~~~~--------~------~-~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      +..++++... .++  +.+..++....        .      . .....+..++.++.+..+|. +++.+..+......+
T Consensus       182 ~~~d~~g~l~-v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~  257 (330)
T 3hxj_A          182 ASIGKDGTIY-FGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIE  257 (330)
T ss_dssp             CEECTTCCEE-EES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCC
T ss_pred             eEEcCCCEEE-EEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCcc
Confidence            4555555533 333  55555552110        0      0 11235777888888988874 566666665444445


Q ss_pred             EEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCC
Q psy8895         376 RSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~  443 (479)
                      .++.+.+++.++++..++.+..+|. +++...........+.++...+++.|..|+.+|.+++...+.
T Consensus       258 ~~~~~~~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          258 SSPVIGNTDTIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLE  324 (330)
T ss_dssp             SCCEECTTSCEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred             ccceEcCCCeEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence            5667777888887776668988985 677666555445566777887888888899999999877554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.29  E-value=3.6e-05  Score=79.53  Aligned_cols=221  Identities=15%  Similarity=0.162  Sum_probs=134.2

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCC----cCEEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCCcccCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV----GSVRG-LTVSPRHPYLFSCGD------DRTVKCWDLEYNKAPVQP  299 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~----~~v~~-v~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~  299 (479)
                      +..++.++.|+.|..+|..+|+.+..+....    ..+.+ -.+. ++ .++.+..      ++.|..+|.++++.....
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4567788889999999999999988876431    11111 0111 34 4444432      588999999887754321


Q ss_pred             CCC--CC---------------------------CCCeEEEEEeCCCCEEEEEeCCCe-------------------EEE
Q psy8895         300 GSM--DS---------------------------ESGIFSMTFDNSGSRLITTEADKT-------------------VKL  331 (479)
Q Consensus       300 ~~~--~~---------------------------~~~i~~~~~~~~~~~l~~~~~d~~-------------------i~~  331 (479)
                      ...  ..                           ......+++++....++.++.++.                   |.-
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~A  274 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILA  274 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence            100  00                           001123577777777777765542                   555


Q ss_pred             EeCCCCCC------------------C--------CC---CeEEEEeCCCcEEEEECCCCeeEEEEccCC----------
Q psy8895         332 YKEDDSAT------------------E--------ES---HPVITGSHDCTIRLWDLAAGKSLCTLTNHK----------  372 (479)
Q Consensus       332 ~~~~~~~~------------------~--------~~---~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~----------  372 (479)
                      +|.++.+.                  +        +.   ..++.++.+|.++++|..+++.+...+...          
T Consensus       275 lD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~  354 (668)
T 1kv9_A          275 IRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLA  354 (668)
T ss_dssp             ECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTT
T ss_pred             EcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccc
Confidence            55443211                  0        01   136778899999999999999885443211          


Q ss_pred             --Cce------------------------EEEEEeCCCcEEEEE------------------------------------
Q psy8895         373 --KSV------------------------RSVALHPTLYMFASA------------------------------------  390 (479)
Q Consensus       373 --~~v------------------------~~i~~~~~~~~l~s~------------------------------------  390 (479)
                        .++                        ..++++|+..++...                                    
T Consensus       355 ~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~  434 (668)
T 1kv9_A          355 TGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAA  434 (668)
T ss_dssp             TCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGG
T ss_pred             cCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCC
Confidence              000                        125777765544321                                    


Q ss_pred             cC-CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         391 SP-DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       391 s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .. +.+..||..+|+.+-+.+.+...........++.++.|+.|+.++.||.++|+.+.++++.
T Consensus       435 ~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          435 VVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             GCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             CccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence            01 3488899999998755443222111112235668888999999999999999999877664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.29  E-value=0.0014  Score=58.97  Aligned_cols=206  Identities=9%  Similarity=0.029  Sum_probs=120.6

Q ss_pred             ccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  297 (479)
                      .....++++++++ ++++-..++.|..+++..+.....+.........+++++++..++ +-...+.|.++++.......
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~  115 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence            3467899998655 455555678999999976654433333334678999999765555 44556789999986432211


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCceE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSVR  376 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v~  376 (479)
                      ..  .........++++|++..+..+....                      ..+.|..+++... ....+ ........
T Consensus       116 ~~--~~~~~~P~~i~vd~~~g~lyv~~~~~----------------------~~~~I~~~~~dg~-~~~~~~~~~~~~P~  170 (267)
T 1npe_A          116 LF--DTGLVNPRGIVTDPVRGNLYWTDWNR----------------------DNPKIETSHMDGT-NRRILAQDNLGLPN  170 (267)
T ss_dssp             EE--CSSCSSEEEEEEETTTTEEEEEECCS----------------------SSCEEEEEETTSC-CCEEEECTTCSCEE
T ss_pred             EE--ECCCCCccEEEEeeCCCEEEEEECCC----------------------CCcEEEEEecCCC-CcEEEEECCCCCCc
Confidence            11  01123467788888666554443210                      0123333333221 11111 11223468


Q ss_pred             EEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         377 SVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       377 ~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .++++|++ .++++.... .|..++...........+- .....+++..+..+++...++.|..+|..+|+.++.+.
T Consensus       171 gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          171 GLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             EEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC-CCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            89999975 455555544 5889998654433333322 22355666633355666667899999999998876664

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.23  E-value=9.2e-05  Score=70.97  Aligned_cols=194  Identities=10%  Similarity=0.051  Sum_probs=117.0

Q ss_pred             EEEEcCCCcEEEEEeCC------CeEEEEECCCCceEEEEecCCcC---EEEEEEcCCCCEEEEEE--------------
Q psy8895         224 CVAVEPGNEWFATGSAD------KIIKVWDLATGKLKLSLTGHVGS---VRGLTVSPRHPYLFSCG--------------  280 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d------~~i~iWd~~~~~~~~~~~~h~~~---v~~v~~~~~~~~l~s~~--------------  280 (479)
                      .+..+|+| ++++...+      +.|.+.|..+++.+..+..-..+   -..+-|+|+++.+++..              
T Consensus       142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~  220 (462)
T 2ece_A          142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLE  220 (462)
T ss_dssp             EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTT
T ss_pred             ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchh
Confidence            35667888 77766555      78999999999998887622111   23467899999888874              


Q ss_pred             -----CCCcEEEEECCCCCcccCCCCCC-CCCCeEEEEE--eCCCCEEEEEeC------CCeEEEEeCCCCCCCCCCeEE
Q psy8895         281 -----DDRTVKCWDLEYNKAPVQPGSMD-SESGIFSMTF--DNSGSRLITTEA------DKTVKLYKEDDSATEESHPVI  346 (479)
Q Consensus       281 -----~d~~i~~wd~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~l~  346 (479)
                           .+.+|.+||+.+.+..... ..+ .......+.|  +|+++++.+++.      +++|.+|..+...      + 
T Consensus       221 ~~~~~~~d~V~v~D~~~~k~~~tI-~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~------~-  292 (462)
T 2ece_A          221 HLKDRYGNRIHFWDLRKRKRIHSL-TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK------W-  292 (462)
T ss_dssp             THHHHSCCEEEEEETTTTEEEEEE-ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE------E-
T ss_pred             hhhhccCCEEEEEECCCCcEeeEE-ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc------e-
Confidence                 3689999999875432221 111 1123445656  899998877663      4566665543210      0 


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEc---c----CCCceEEEEEeCCCcEEEEEcC--CcEEEEeCC---CCeEEeeecCCc-
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLT---N----HKKSVRSVALHPTLYMFASASP--DNIKQWKCP---EGKFIQNLPGHN-  413 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~---~----h~~~v~~i~~~~~~~~l~s~s~--d~i~~w~~~---~~~~~~~~~~h~-  413 (479)
                           ..+.+.|+.+.+...++.   .    -......|.+|+|++.|..+..  +.|.++|+.   +.+++..+.-.. 
T Consensus       293 -----~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~  367 (462)
T 2ece_A          293 -----NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGI  367 (462)
T ss_dssp             -----EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTT
T ss_pred             -----eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCe
Confidence                 112333433322211111   0    0235688999999987765543  359999985   234554443210 


Q ss_pred             -------------ceEEEEEEcCCC-EEEEEe
Q psy8895         414 -------------AIINSICVNNEG-VLVSGA  431 (479)
Q Consensus       414 -------------~~v~~l~~~~~~-~l~sg~  431 (479)
                                   +.-..+.+++|| +|+.+.
T Consensus       368 ~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          368 FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence                         124678899999 666665

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.22  E-value=0.00075  Score=59.90  Aligned_cols=175  Identities=14%  Similarity=0.144  Sum_probs=111.1

Q ss_pred             EEEEEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCccc
Q psy8895         222 VRCVAVEPGNEWFATGSADK--IIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~  297 (479)
                      ...+.|+ ++.++.+.+.+|  .|++.|+.+++.+..+.-... .-..+++.  +..|... -.++.+.++|.++.+...
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4678888 677888888776  899999999998887654322 12334554  4444443 468899999998765432


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC--C---
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH--K---  372 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~---  372 (479)
                      +... ..++  +.++  +++..                         ++....+++|.++|..+.+.+.+++-.  .   
T Consensus       122 ti~~-~~eG--~glt--~dg~~-------------------------L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~  171 (262)
T 3nol_A          122 SFNY-DGEG--WGLT--HNDQY-------------------------LIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL  171 (262)
T ss_dssp             EEEC-SSCC--CCEE--ECSSC-------------------------EEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred             EEEC-CCCc--eEEe--cCCCE-------------------------EEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence            2111 1111  1111  12222                         333334567888888888777776431  1   


Q ss_pred             CceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------------cceEEEEEEcCCC-E-EEEE
Q psy8895         373 KSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------------NAIINSICVNNEG-V-LVSG  430 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------------~~~v~~l~~~~~~-~-l~sg  430 (479)
                      ..++.+.+. ++.+++....+ .|.+.|..+++.+..+.-.            ....+.++++|+. . ++||
T Consensus       172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred             cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence            334567776 67888877644 5999999999988776432            2367899999876 4 5555

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.20  E-value=7.9e-05  Score=77.25  Aligned_cols=201  Identities=10%  Similarity=0.101  Sum_probs=122.6

Q ss_pred             EEEEcCCCcEEEEEeCCCe-------------------EEEEECCCCceEEEEec--CC-------cCEEEEEEcCCCC-
Q psy8895         224 CVAVEPGNEWFATGSADKI-------------------IKVWDLATGKLKLSLTG--HV-------GSVRGLTVSPRHP-  274 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d~~-------------------i~iWd~~~~~~~~~~~~--h~-------~~v~~v~~~~~~~-  274 (479)
                      .++++|++.+++.++.++.                   |..+|.++|+.+..++.  |.       .+........+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5778888888888887763                   99999999999988765  32       1222223333554 


Q ss_pred             --EEEEEECCCcEEEEECCCCCcccCCCCC--------------------------CCCC-----------CeEEEEEeC
Q psy8895         275 --YLFSCGDDRTVKCWDLEYNKAPVQPGSM--------------------------DSES-----------GIFSMTFDN  315 (479)
Q Consensus       275 --~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------------------------~~~~-----------~i~~~~~~~  315 (479)
                        .++.++.+|.++++|.++++........                          ....           ....++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              6788899999999999887754110000                          0000           011267888


Q ss_pred             CCCEEEEEeCCCeEEEEeCCCC--CCC-CCC-eE----------------EEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         316 SGSRLITTEADKTVKLYKEDDS--ATE-ESH-PV----------------ITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       316 ~~~~l~~~~~d~~i~~~~~~~~--~~~-~~~-~l----------------~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      +...+++...+....++.....  ... ... .+                .....+++++.||+.+++.+.+++.+.. +
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~  477 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-F  477 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-c
Confidence            8888887776655555433221  000 000 00                0001258899999999999988765532 2


Q ss_pred             EEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcc-eEEEEEEcCCC
Q psy8895         376 RSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNA-IINSICVNNEG  425 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~-~v~~l~~~~~~  425 (479)
                      ..-.+...+.++..++.| .++.||..+|+.+..++...+ ...-+.+..+|
T Consensus       478 ~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G  529 (689)
T 1yiq_A          478 NGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDG  529 (689)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECC
Confidence            333444445555555555 599999999999877654322 22334556666

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.15  E-value=0.001  Score=62.08  Aligned_cols=178  Identities=13%  Similarity=0.082  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCC-EEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---
Q psy8895         264 VRGLTVSPRHP-YLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---  339 (479)
Q Consensus       264 v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---  339 (479)
                      ..+..|+|++. .+++...++.|..||.++++....    .....+.++.+++++..++.. . ..+.+|+......   
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~----~~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH----ALPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE----ECSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE----ECCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEE
Confidence            34667888754 455556778999999876543211    113468889999988766654 3 3477777543210   


Q ss_pred             ------------------CCCCeEEEEeC------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEE-EEEcC-C
Q psy8895         340 ------------------EESHPVITGSH------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMF-ASASP-D  393 (479)
Q Consensus       340 ------------------~~~~~l~sgs~------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l-~s~s~-d  393 (479)
                                        .++...++...      .+.|..+|  +++. ..+..+......++|+|++..+ ++.+. +
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~  201 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN  201 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence                              11222332221      23444555  3433 2232233456789999998754 44444 3


Q ss_pred             cEEEEeCC--CC-e-----EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         394 NIKQWKCP--EG-K-----FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       394 ~i~~w~~~--~~-~-----~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .|.+|+..  ++ +     ....+.........+++++++ ++++...++.|..||. +|+.+..+.
T Consensus       202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            59999975  55 3     223334445567889999888 5555556789999998 566666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.06  E-value=0.0019  Score=57.29  Aligned_cols=177  Identities=7%  Similarity=0.105  Sum_probs=112.6

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      ...+.|+ ++.++++.+.++.|++.|+++++.+..+-.....-..+++..+ +..+..-.++.+.++|.++.+...+...
T Consensus        57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            4678887 4678888899999999999999887766111112234566543 3333445788999999987654332211


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--CC---CceE
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--HK---KSVR  376 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~---~~v~  376 (479)
                       ..++  +.++  ++++.                         |+.+..+++|.++|..+.+.+.+++-  +.   ..++
T Consensus       135 -~~eG--wGLt--~Dg~~-------------------------L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lN  184 (268)
T 3nok_A          135 -SGEG--WGLC--YWNGK-------------------------LVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELIN  184 (268)
T ss_dssp             -SSCC--CCEE--EETTE-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             -CCce--eEEe--cCCCE-------------------------EEEECCCCEEEEEcCCCCeEEEEEEeCCCCccccccc
Confidence             1111  1122  12233                         33334466788888888777776643  21   2346


Q ss_pred             EEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCC-------------cceEEEEEEcCCC--EEEEEe
Q psy8895         377 SVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGH-------------NAIINSICVNNEG--VLVSGA  431 (479)
Q Consensus       377 ~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~--~l~sg~  431 (479)
                      .+.+. ++.+++.... +.|.+.|..+++.+..+.-.             ....+.++++|++  +++||-
T Consensus       185 eLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          185 ELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             ccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            67776 6788887754 46999999999987765421             2467999999876  566663

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.03  E-value=0.00029  Score=71.29  Aligned_cols=109  Identities=10%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEccCC-------------Cce--------------------------EEEEEeCCCc
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTNHK-------------KSV--------------------------RSVALHPTLY  385 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~h~-------------~~v--------------------------~~i~~~~~~~  385 (479)
                      ++.++.+|.+.++|..+++.+...+-..             .++                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            5667889999999999999887764221             111                          2357787755


Q ss_pred             EEEEEc--------------------------------------CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEE
Q psy8895         386 MFASAS--------------------------------------PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVL  427 (479)
Q Consensus       386 ~l~s~s--------------------------------------~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l  427 (479)
                      ++....                                      .+.+..||..+++.+-+.+.............++.+
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  478 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV  478 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence            444332                                      124888999999876554322111111112346777


Q ss_pred             EEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         428 VSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       428 ~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.++.||.++.||.++|+.+-++++.
T Consensus       479 ~~g~~dg~l~a~D~~tG~~lw~~~~~  504 (571)
T 2ad6_A          479 WYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEcCCCeEEEEECCCCCEEEEEeCC
Confidence            77999999999999999998877654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.02  E-value=0.00035  Score=70.74  Aligned_cols=60  Identities=15%  Similarity=0.189  Sum_probs=39.6

Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .+..||..+|+.+-..+.............++.++.++.|+.++.||.+||+.+-+.++.
T Consensus       454 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          454 QIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEEEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence            477888888887654421100000111234667777999999999999999998776554

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.95  E-value=0.00067  Score=70.15  Aligned_cols=185  Identities=11%  Similarity=0.134  Sum_probs=114.8

Q ss_pred             CCeEEEEECCCCceEEEEecCCcC--------------------------------EEEEEEcCCCCEEEEEECCC----
Q psy8895         240 DKIIKVWDLATGKLKLSLTGHVGS--------------------------------VRGLTVSPRHPYLFSCGDDR----  283 (479)
Q Consensus       240 d~~i~iWd~~~~~~~~~~~~h~~~--------------------------------v~~v~~~~~~~~l~s~~~d~----  283 (479)
                      ++.|..+|..+|+.+..+......                                ...++++|++..++.+..++    
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~  268 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS  268 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence            789999999999998887643211                                12467888888888776553    


Q ss_pred             ---------------cEEEEECCCCCcccCCCCCC-------CCCCeEEEEEeCCC---CEEEEEeCCCeEEEEeCCCCC
Q psy8895         284 ---------------TVKCWDLEYNKAPVQPGSMD-------SESGIFSMTFDNSG---SRLITTEADKTVKLYKEDDSA  338 (479)
Q Consensus       284 ---------------~i~~wd~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~---~~l~~~~~d~~i~~~~~~~~~  338 (479)
                                     .|..+|.++++.........       .......+....+|   ..++.++.++.+.++|..+.+
T Consensus       269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~  348 (677)
T 1kb0_A          269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK  348 (677)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCC
Confidence                           58889998877543211111       11222233333355   567888888888888765432


Q ss_pred             C----------------------------------------------------CCCCeEEEEeC----------------
Q psy8895         339 T----------------------------------------------------EESHPVITGSH----------------  350 (479)
Q Consensus       339 ~----------------------------------------------------~~~~~l~sgs~----------------  350 (479)
                      .                                                    +....+++...                
T Consensus       349 ~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~  428 (677)
T 1kb0_A          349 FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ  428 (677)
T ss_dssp             EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC
T ss_pred             EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccc
Confidence            1                                                    01234444322                


Q ss_pred             ---------------------------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCC
Q psy8895         351 ---------------------------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPE  402 (479)
Q Consensus       351 ---------------------------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~  402 (479)
                                                 .+.|..||+.+++.+.+++. ...+....+..++.++..++.+ .++.||..+
T Consensus       429 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t  507 (677)
T 1kb0_A          429 AGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT  507 (677)
T ss_dssp             CCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred             ccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCC
Confidence                                       27899999999999888753 3334444455555444445554 699999999


Q ss_pred             CeEEeeecCCc-ceEEEEEEcCCC
Q psy8895         403 GKFIQNLPGHN-AIINSICVNNEG  425 (479)
Q Consensus       403 ~~~~~~~~~h~-~~v~~l~~~~~~  425 (479)
                      |+.+..+.-.. ....-+.+..+|
T Consensus       508 G~~lw~~~~~~~~~~~p~~y~~~G  531 (677)
T 1kb0_A          508 GEKLWEAPTGTGVVAAPSTYMVDG  531 (677)
T ss_dssp             CCEEEEEECSSCCCSCCEEEEETT
T ss_pred             CceeeeeeCCCCcccCCEEEEeCC
Confidence            99988776332 222333445566

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.93  E-value=0.00022  Score=70.88  Aligned_cols=215  Identities=10%  Similarity=0.050  Sum_probs=138.2

Q ss_pred             CCCcEEEEEeC-CCeEEEEECCCCceEEEEecC-CcCEEEEEE-c-CCCCEEEEEE------------------CCCcEE
Q psy8895         229 PGNEWFATGSA-DKIIKVWDLATGKLKLSLTGH-VGSVRGLTV-S-PRHPYLFSCG------------------DDRTVK  286 (479)
Q Consensus       229 ~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h-~~~v~~v~~-~-~~~~~l~s~~------------------~d~~i~  286 (479)
                      +||++++.... +..|.+-|+.+.++...+.-- ......+++ + |++.+++.++                  .++.+.
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            47777665554 567999999999987755321 235788887 5 8999988875                  235788


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC---------------eEEEEeCCCCC--CCCCCeEEEEe
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK---------------TVKLYKEDDSA--TEESHPVITGS  349 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~~~~~~~~~--~~~~~~l~sgs  349 (479)
                      +.|.++.+...+..- +  +...-++++++++++++.+.+.               .+.+++.....  ...+.....  
T Consensus       179 vID~~t~~v~~qI~V-g--g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i--  253 (595)
T 1fwx_A          179 AVDADKWEVAWQVLV-S--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL--  253 (595)
T ss_dssp             EEETTTTEEEEEEEE-S--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE--
T ss_pred             EEECCCCeEEEEEEe-C--CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE--
Confidence            899886554332110 0  1123477889999999888663               24444432110  011111211  


Q ss_pred             CCCcEEEEECCC--Cee-EEEEccCCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCe------------EEeeecCC
Q psy8895         350 HDCTIRLWDLAA--GKS-LCTLTNHKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGK------------FIQNLPGH  412 (479)
Q Consensus       350 ~d~~v~iwd~~~--~~~-~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~------------~~~~~~~h  412 (479)
                        +.|.+.|.++  ++. +..+... .....+.++||++++..+...  .+.++|..+.+            ....+.--
T Consensus       254 --~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG  330 (595)
T 1fwx_A          254 --NGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG  330 (595)
T ss_dssp             --TTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC
T ss_pred             --CcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC
Confidence              5699999998  555 4555432 244689999999877776543  59999987552            23333222


Q ss_pred             cceEEEEEEcCCC-EEEEEeCCCcEEEEecCC----------CeEEEEEEE
Q psy8895         413 NAIINSICVNNEG-VLVSGADNGTMCFWDWRT----------GYNFQRLQV  452 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~----------~~~~~~~~~  452 (479)
                       ....-++|+++| ..++--.|+.|..||+.+          .+.++++.+
T Consensus       331 -~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV  380 (595)
T 1fwx_A          331 -LGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV  380 (595)
T ss_dssp             -SCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             -CCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence             235677999999 455677899999999987          455666544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.91  E-value=0.02  Score=60.32  Aligned_cols=222  Identities=9%  Similarity=0.110  Sum_probs=141.1

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec-------CCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG-------HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~-------h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      ...|.++...++|.+.+....+| +..||..+++.......       ....|.++...+++.+.+. ..+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCC
Confidence            45688888887777655443344 88899887755432211       1356999999988876554 444 58889976


Q ss_pred             CCCcccCC-----CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------C----------CCCCe
Q psy8895         292 YNKAPVQP-----GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------T----------EESHP  344 (479)
Q Consensus       292 ~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------~----------~~~~~  344 (479)
                      +.......     ...-....|.++..++++. +-.|+.++-+..++.....            .          .....
T Consensus       291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~  369 (795)
T 4a2l_A          291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN  369 (795)
T ss_dssp             TTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC
T ss_pred             CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC
Confidence            54322110     0111235688998888776 4456666666666532210            0          01123


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcc--------CCCceEEEEEeCCCc-EEEEEcCCcEEEEeCCCCeEEeeec----C
Q psy8895         345 VITGSHDCTIRLWDLAAGKSLCTLTN--------HKKSVRSVALHPTLY-MFASASPDNIKQWKCPEGKFIQNLP----G  411 (479)
Q Consensus       345 l~sgs~d~~v~iwd~~~~~~~~~~~~--------h~~~v~~i~~~~~~~-~l~s~s~d~i~~w~~~~~~~~~~~~----~  411 (479)
                      +-.|+.++-+..||..+++...-...        ....|.++...+++. +.++...+.+..++..+++...-..    .
T Consensus       370 lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l  449 (795)
T 4a2l_A          370 LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQL  449 (795)
T ss_dssp             EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCC
T ss_pred             EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCc
Confidence            55678887899999876644322111        235799999999998 7777666789999988876544322    1


Q ss_pred             CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895         412 HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       412 h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~  445 (479)
                      +...|.++...+++.|-.|+. +-+.+||.+++.
T Consensus       450 ~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~  482 (795)
T 4a2l_A          450 VNENVYAILPDGEGNLWLGTL-SALVRFNPEQRS  482 (795)
T ss_dssp             SCSCEEEEEECSSSCEEEEES-SCEEEEETTTTE
T ss_pred             CCCeeEEEEECCCCCEEEEec-CceeEEeCCCCe
Confidence            345789999888885555555 457789988764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.90  E-value=0.01  Score=52.11  Aligned_cols=177  Identities=13%  Similarity=0.141  Sum_probs=110.5

Q ss_pred             cEEEEEEcCCCcEEEEEeCCC--eEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         221 WVRCVAVEPGNEWFATGSADK--IIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~--~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ....+.|++ +.++.+.+.+|  .|+..|+.+++.+..+.-... .-..+++.. ++.....-.++.+.++|.++.+...
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~~~   99 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTPRA   99 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcEEE
Confidence            456788886 66777777754  899999999999877653322 123445543 2233344568899999997765432


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC--C---
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH--K---  372 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h--~---  372 (479)
                      .... ...+  +.++  +++..                         ++.+..+++|.++|..+.+.+.+++-.  .   
T Consensus       100 ti~~-~~~G--wglt--~dg~~-------------------------L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~  149 (243)
T 3mbr_X          100 RFRY-PGEG--WALT--SDDSH-------------------------LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPL  149 (243)
T ss_dssp             EEEC-SSCC--CEEE--ECSSC-------------------------EEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             EEeC-CCCc--eEEe--eCCCE-------------------------EEEECCCCeEEEEeCCCCeEEEEEEEccCCccc
Confidence            2111 1111  1222  12222                         333445667888888888777766431  1   


Q ss_pred             CceEEEEEeCCCcEEEEEc-CCcEEEEeCCCCeEEeeecC-------------CcceEEEEEEcCCC--EEEEE
Q psy8895         373 KSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPG-------------HNAIINSICVNNEG--VLVSG  430 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s-~d~i~~w~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~--~l~sg  430 (479)
                      ..++.+.+. ++.+++... .+.|.+.|..+|+.+..+.-             -....+.++++|++  +++||
T Consensus       150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          150 DNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             ccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            245566665 677777775 45699999999998876541             12467999999876  55665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.90  E-value=0.00026  Score=74.27  Aligned_cols=195  Identities=16%  Similarity=0.119  Sum_probs=110.9

Q ss_pred             cEEEEEEc-CCCcEEEEEe-CCC----eEEEEECCCC-ceEE-EEecCCcCEEEEEEcCCCCEEEEEECC-----CcEEE
Q psy8895         221 WVRCVAVE-PGNEWFATGS-ADK----IIKVWDLATG-KLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDD-----RTVKC  287 (479)
Q Consensus       221 ~v~~~~~~-~~g~~l~sgs-~d~----~i~iWd~~~~-~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d-----~~i~~  287 (479)
                      .+...+|+ |||++||-+. .+|    .|.++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            67889999 9999877443 232    5999999998 6321 111   112357899999888776654     25777


Q ss_pred             EECCCCCccc-CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe-eE
Q psy8895         288 WDLEYNKAPV-QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK-SL  365 (479)
Q Consensus       288 wd~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~-~~  365 (479)
                      +++.+.+... .............+.++|++++++..+..+                      ....|.++|+.++. ..
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~----------------------~~~~l~~~d~~~~~~~~  309 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSP----------------------ETAEVHLLDLRKGNAHN  309 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECS----------------------SCEEEEEEESSSCTTCC
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCC----------------------CCceEEEEECCCCCCCc
Confidence            8886643211 100001122355778899988876543221                      12346677776542 12


Q ss_pred             --EEE-ccCCCceEEEEEeCCCcEEEEEcCC-----cEEEEeCCCCeEEee-ecCCcc--eEEEEEEcCCCEEEEEeCCC
Q psy8895         366 --CTL-TNHKKSVRSVALHPTLYMFASASPD-----NIKQWKCPEGKFIQN-LPGHNA--IINSICVNNEGVLVSGADNG  434 (479)
Q Consensus       366 --~~~-~~h~~~v~~i~~~~~~~~l~s~s~d-----~i~~w~~~~~~~~~~-~~~h~~--~v~~l~~~~~~~l~sg~~dg  434 (479)
                        ..+ ........++.|+.+..++..+..+     .+..++..++..... +..|..  .+..+.+..+.++++...|+
T Consensus       310 ~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g  389 (751)
T 2xe4_A          310 TLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAG  389 (751)
T ss_dssp             CEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETT
T ss_pred             eeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCC
Confidence              333 2334455666666656555555432     366677654222222 222322  45666666555777888888


Q ss_pred             cEEEEe
Q psy8895         435 TMCFWD  440 (479)
Q Consensus       435 ~i~lWd  440 (479)
                      ..+||-
T Consensus       390 ~~~l~~  395 (751)
T 2xe4_A          390 LTRIWT  395 (751)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            755543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.89  E-value=0.0041  Score=57.70  Aligned_cols=219  Identities=12%  Similarity=0.110  Sum_probs=129.2

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEec--------------------CCcCEEEEEEcC-CCCEEEEE
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG--------------------HVGSVRGLTVSP-RHPYLFSC  279 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~--------------------h~~~v~~v~~~~-~~~~l~s~  279 (479)
                      .-.+++++++|++++++..++.|..||..++... .+..                    .......+++.+ ++. |+.+
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            3456788899987888888999999998776543 2221                    012578899997 664 4555


Q ss_pred             ECCCcEEEEECCCCCcccCCCCC--CCCCCeEEEEEeC-CCCEEEEEeC-----------------CCeEEEEeCCCCC-
Q psy8895         280 GDDRTVKCWDLEYNKAPVQPGSM--DSESGIFSMTFDN-SGSRLITTEA-----------------DKTVKLYKEDDSA-  338 (479)
Q Consensus       280 ~~d~~i~~wd~~~~~~~~~~~~~--~~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~~~~~~~~~-  338 (479)
                      ...+.+..+|...+.........  ........+++++ ++...++...                 .+.+..++..... 
T Consensus        98 d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~  177 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET  177 (322)
T ss_dssp             ETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred             ECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence            45556888887643221110000  1113467789999 8876665433                 2556666654221 


Q ss_pred             ---------------CCCCCeEE-EEeCCCcEEEEECCCCe--eEEEEccCCCceEEEEEeCCCcEEEEEcC--------
Q psy8895         339 ---------------TEESHPVI-TGSHDCTIRLWDLAAGK--SLCTLTNHKKSVRSVALHPTLYMFASASP--------  392 (479)
Q Consensus       339 ---------------~~~~~~l~-sgs~d~~v~iwd~~~~~--~~~~~~~h~~~v~~i~~~~~~~~l~s~s~--------  392 (479)
                                     ..+...++ +-+.++.|..+++....  ....+....+ ...+++++++.++++...        
T Consensus       178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~  256 (322)
T 2fp8_A          178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG  256 (322)
T ss_dssp             EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred             EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence                           11233344 43556789999887421  1111211223 678999999988887654        


Q ss_pred             ---CcEEEEeCCCCeEEeeecCC----cceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         393 ---DNIKQWKCPEGKFIQNLPGH----NAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       393 ---d~i~~w~~~~~~~~~~~~~h----~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                         ..|..++. .++.+..+...    -..+.++++. ++ .+++...++.|..+++...
T Consensus       257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred             CCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence               24777776 46666555432    2345556654 55 4555556788888887644

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.87  E-value=0.00071  Score=69.79  Aligned_cols=221  Identities=13%  Similarity=0.114  Sum_probs=125.9

Q ss_pred             EEEEcC-CCcEEEEEeCCC-----------eEEEEECCCCceE--EEEe-cCCcCEEEEEEcCCCCEEEEEEC-CCcEEE
Q psy8895         224 CVAVEP-GNEWFATGSADK-----------IIKVWDLATGKLK--LSLT-GHVGSVRGLTVSPRHPYLFSCGD-DRTVKC  287 (479)
Q Consensus       224 ~~~~~~-~g~~l~sgs~d~-----------~i~iWd~~~~~~~--~~~~-~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~  287 (479)
                      .+++.+ +++.++.|+.+.           .+.+||..+++..  ..+. .+.....++++..++++++.||. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456666 889999988653           5889999887542  2222 23333445677889999999884 568999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CC-----CeEEEEeCCCCC---------C------------C
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-AD-----KTVKLYKEDDSA---------T------------E  340 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----~~i~~~~~~~~~---------~------------~  340 (479)
                      ||+.+....... .......-..+...++++.++.|+ .+     ..+.+||.....         .            .
T Consensus       270 yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          270 YDSSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEGGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             ecCcCCceeECC-CCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            998765432211 111111122344556788888887 33     467888865421         0            1


Q ss_pred             CCCeEEEEeCCC---------cEEEEECCCCeeEEEEccCC---------CceEEEEEeC-CCcEEEEEcCC--------
Q psy8895         341 ESHPVITGSHDC---------TIRLWDLAAGKSLCTLTNHK---------KSVRSVALHP-TLYMFASASPD--------  393 (479)
Q Consensus       341 ~~~~l~sgs~d~---------~v~iwd~~~~~~~~~~~~h~---------~~v~~i~~~~-~~~~l~s~s~d--------  393 (479)
                      .....+.|+.|+         .+..||..+..-......+.         ..-.++.+.. ++++++.++.+        
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            123345555443         46788887765333222111         1234455543 66777776521        


Q ss_pred             ----cEEEEeCCCCeEEeee--cCCcceE-EEEEEcCCC-EEEEEeCC-----------CcEEEEecCCCe
Q psy8895         394 ----NIKQWKCPEGKFIQNL--PGHNAII-NSICVNNEG-VLVSGADN-----------GTMCFWDWRTGY  445 (479)
Q Consensus       394 ----~i~~w~~~~~~~~~~~--~~h~~~v-~~l~~~~~~-~l~sg~~d-----------g~i~lWd~~~~~  445 (479)
                          .+.+||..+.+-....  ..+.... .+.+..+++ +++.|+.+           ..+.+||..+++
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~  499 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT  499 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence                3566776665433221  1111111 233455566 77777754           568999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.85  E-value=0.00085  Score=59.54  Aligned_cols=176  Identities=11%  Similarity=0.115  Sum_probs=110.4

Q ss_pred             EEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcccCCCCCCCCCCeEE--EEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPVQPGSMDSESGIFS--MTFDNSGSRLITTEADKTVKLYKEDDSAT  339 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~  339 (479)
                      ...+.|+ ++.++.+.+.++  .|+.+|+++++...... .+  ...+.  ++..  +..+                   
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~--~~~FgeGit~~--g~~l-------------------   99 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LG--KRYFGEGISDW--KDKI-------------------   99 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CC--TTCCEEEEEEE--TTEE-------------------
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cC--CccceeEEEEe--CCEE-------------------
Confidence            4788998 666667777776  89999998776432210 11  11111  1111  1111                   


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecCC----c-
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPGH----N-  413 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~h----~-  413 (479)
                           .+..-.++.+.++|..+.+.+.++...... ..++  +++ .++++.+.+.+.++|..+.+.+.+++-.    . 
T Consensus       100 -----y~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~  171 (262)
T 3nol_A          100 -----VGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEEL  171 (262)
T ss_dssp             -----EEEESSSSEEEEEETTTCCEEEEEECSSCC-CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEEC
T ss_pred             -----EEEEeeCCEEEEEECccCcEEEEEECCCCc-eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccc
Confidence                 122334778999999999999998753322 2333  444 4555555556999999998888776542    1 


Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecC----CCCCceEEeeehhhhc
Q psy8895         414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG----FPKPSVFFFFLAFSYL  473 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  473 (479)
                      ..++.+.+. ++ ..+..-.+..|.+-|.++|+.+..+.+..+..    ..+...+.--+|+++.
T Consensus       172 ~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~  235 (262)
T 3nol_A          172 PELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKE  235 (262)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETT
T ss_pred             cccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCC
Confidence            335566666 56 45555568899999999999999998864321    1123334455888875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.82  E-value=0.011  Score=62.28  Aligned_cols=219  Identities=8%  Similarity=0.128  Sum_probs=140.0

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      |.++...++|.+.+ |+.++-+..||..+++..... ..+...|.++...+++.+.+ +..++-+..||..+.+......
T Consensus       175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~  252 (795)
T 4a2l_A          175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH  252 (795)
T ss_dssp             CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred             eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence            77888877787655 555545888998877654321 12345788888888776554 4444458889986543221110


Q ss_pred             -----CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------CC----------CCCeEEEEeCCC
Q psy8895         301 -----SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------TE----------ESHPVITGSHDC  352 (479)
Q Consensus       301 -----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~~----------~~~~l~sgs~d~  352 (479)
                           ..-....|.++..++++...+ |+.. -+.+++.....             ..          ....+-.|+.++
T Consensus       253 ~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~  330 (795)
T 4a2l_A          253 SPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG  330 (795)
T ss_dssp             CTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS
T ss_pred             CCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC
Confidence                 011235688998888777554 4444 46666643211             00          112355677778


Q ss_pred             cEEEEECCCCeeEEEEcc-------CCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecC--------CcceEE
Q psy8895         353 TIRLWDLAAGKSLCTLTN-------HKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPG--------HNAIIN  417 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~~~-------h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~--------h~~~v~  417 (479)
                      -|..++...... ..+..       ....|.++..++++.+.++...+.+..|+..+++...-...        ....|.
T Consensus       331 Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  409 (795)
T 4a2l_A          331 GLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK  409 (795)
T ss_dssp             CEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred             CeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence            888888665432 12211       23469999999999998877777899999887765443211        235789


Q ss_pred             EEEEcCCCE-EEEEeCCCcEEEEecCCCe
Q psy8895         418 SICVNNEGV-LVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       418 ~l~~~~~~~-l~sg~~dg~i~lWd~~~~~  445 (479)
                      +++..+++. |-.|..++-|..||.+++.
T Consensus       410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~  438 (795)
T 4a2l_A          410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQ  438 (795)
T ss_dssp             EEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred             EEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence            999888886 8888887889999988764

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=97.79  E-value=0.003  Score=60.56  Aligned_cols=217  Identities=13%  Similarity=0.138  Sum_probs=122.9

Q ss_pred             CCCcEE-EEEeCCCeEEEEECCCC----ceEEEEe------cCC-cCEEEEEEcCCCCEEEEEECC------CcEEEEEC
Q psy8895         229 PGNEWF-ATGSADKIIKVWDLATG----KLKLSLT------GHV-GSVRGLTVSPRHPYLFSCGDD------RTVKCWDL  290 (479)
Q Consensus       229 ~~g~~l-~sgs~d~~i~iWd~~~~----~~~~~~~------~h~-~~v~~v~~~~~~~~l~s~~~d------~~i~~wd~  290 (479)
                      .++++| +++-.++.|.+.|+.+.    +..++++      ... ..-..+...|+| +++++..+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            566665 55667789999999755    4555553      111 134567788999 77776544      78999998


Q ss_pred             CCCCcccCCCC-CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         291 EYNKAPVQPGS-MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       291 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      ++.+....... .....--+.+.|+|+++.+++..--.- +.+  ......  ..+.. ..+.+|.+||+.+++.+.++.
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p-~~~--~~g~~~--~~~~~-~~~d~V~v~D~~~~k~~~tI~  245 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVP-NTI--EDGLKL--EHLKD-RYGNRIHFWDLRKRKRIHSLT  245 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCH-HHH--TTCCCT--TTHHH-HSCCEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCc-ccc--ccccch--hhhhh-ccCCEEEEEECCCCcEeeEEe
Confidence            87665432211 111222345778898887766531000 000  000000  00001 346789999999988888876


Q ss_pred             cC-C-CceEEEEE--eCCCcEEEEEc------CC-cEEEEeCCCCeE--Eee--ecCC----------------cceEEE
Q psy8895         370 NH-K-KSVRSVAL--HPTLYMFASAS------PD-NIKQWKCPEGKF--IQN--LPGH----------------NAIINS  418 (479)
Q Consensus       370 ~h-~-~~v~~i~~--~~~~~~l~s~s------~d-~i~~w~~~~~~~--~~~--~~~h----------------~~~v~~  418 (479)
                      -. . .....+.|  +|++.++..+.      .+ +|.+|....++.  .+.  +...                ......
T Consensus       246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~  325 (462)
T 2ece_A          246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD  325 (462)
T ss_dssp             SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred             cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence            42 1 23445555  99987554443      33 465554433432  111  1110                134667


Q ss_pred             EEEcCCC-E-EEEEeCCCcEEEEecCCC---eEEEEEEE
Q psy8895         419 ICVNNEG-V-LVSGADNGTMCFWDWRTG---YNFQRLQV  452 (479)
Q Consensus       419 l~~~~~~-~-l~sg~~dg~i~lWd~~~~---~~~~~~~~  452 (479)
                      +.+++|+ + .++.-..+.|.++|+...   ..++++.+
T Consensus       326 I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t  364 (462)
T 2ece_A          326 IDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL  364 (462)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence            8899999 4 456666889999998633   34444444

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.79  E-value=0.0024  Score=64.58  Aligned_cols=60  Identities=13%  Similarity=0.283  Sum_probs=41.5

Q ss_pred             cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .+..||..+|+.+-+.+.+...........++.++.|+.||.++.||.+||+.+-++++.
T Consensus       467 ~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          467 SLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence            488899999987654432211111111234678888999999999999999998777653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.77  E-value=0.0013  Score=58.90  Aligned_cols=160  Identities=14%  Similarity=0.050  Sum_probs=102.4

Q ss_pred             CEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGD--DRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE  340 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  340 (479)
                      ....++|++++...++.+.  ++.|++.|+++++...... .+.......+++.  +..+                    
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~-l~~~~fgeGi~~~--g~~l--------------------   78 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK-MDDSYFGEGLTLL--NEKL--------------------   78 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEE--TTEE--------------------
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe-cCCCcceEEEEEe--CCEE--------------------
Confidence            3579999998755555553  5799999998776432210 0111011112221  1111                    


Q ss_pred             CCCeEEEEeCCCcEEEEECCCCeeEEEEccC-CCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecCC--c---
Q psy8895         341 ESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPGH--N---  413 (479)
Q Consensus       341 ~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~h--~---  413 (479)
                          .++.-.++.+.++|..+.+.+.++... ...   ..+++|+ .++++...+.+.+.|..+.+.+..+.--  .   
T Consensus        79 ----yv~t~~~~~v~viD~~t~~v~~~i~~g~~~g---~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           79 ----YQVVWLKNIGFIYDRRTLSNIKNFTHQMKDG---WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             ----EEEETTCSEEEEEETTTTEEEEEEECCSSSC---CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             ----EEEEecCCEEEEEECCCCcEEEEEECCCCCe---EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence                233345788999999999999988633 222   3344554 4556555556999999998887776532  1   


Q ss_pred             ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         414 AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ..++.+.+. ++ ..+....++.|.+-|.++++.++++.+.
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~  191 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLP  191 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECH
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECC
Confidence            136777777 66 4455556889999999999999998875

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.75  E-value=0.025  Score=51.95  Aligned_cols=208  Identities=8%  Similarity=0.018  Sum_probs=117.8

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~  297 (479)
                      .....++++++|+++++-..++.|..||.... ....+. .......++++++++++++....+  .|..+|..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            45678999999998888778899999998754 333332 234678999999998766554332  46666765544221


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCC--------------CC-----------CCCC-eEEEEeCC
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDS--------------AT-----------EESH-PVITGSHD  351 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~--------------~~-----------~~~~-~l~sgs~d  351 (479)
                      .. ..........+...+.+..+++....+.|..++....              ..           .+.. ..++-+..
T Consensus       110 ~~-~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~~~  188 (306)
T 2p4o_A          110 LL-TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEK  188 (306)
T ss_dssp             EE-ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTT
T ss_pred             EE-eCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeCCC
Confidence            10 0011111223333343333444445667766665421              00           0112 23444456


Q ss_pred             CcEEEEECCC-Cee--EEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE--eeecCCcceEEEEEEc---
Q psy8895         352 CTIRLWDLAA-GKS--LCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI--QNLPGHNAIINSICVN---  422 (479)
Q Consensus       352 ~~v~iwd~~~-~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~---  422 (479)
                      +.|..+|+.. ++.  ...+.. ......+++++++.++++.... .|.+++.. ++..  ..+........+++|.   
T Consensus       189 ~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~  266 (306)
T 2p4o_A          189 MLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTE  266 (306)
T ss_dssp             TEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCST
T ss_pred             CEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEeccc
Confidence            7888888764 221  111111 1234568899999888776644 59899864 6553  2333333457889998   


Q ss_pred             CCC-EEEEEeC
Q psy8895         423 NEG-VLVSGAD  432 (479)
Q Consensus       423 ~~~-~l~sg~~  432 (479)
                      +++ .|+.+..
T Consensus       267 ~d~~~LyVt~~  277 (306)
T 2p4o_A          267 GDCTAIYVVTN  277 (306)
T ss_dssp             TTTTEEEEEEC
T ss_pred             CCCCEEEEECC
Confidence            675 5544443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.75  E-value=0.022  Score=51.07  Aligned_cols=185  Identities=9%  Similarity=0.004  Sum_probs=101.4

Q ss_pred             cEEEEEeCCCeEEEEECCCCce-----EEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCCCCCCC
Q psy8895         232 EWFATGSADKIIKVWDLATGKL-----KLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPGSMDSE  305 (479)
Q Consensus       232 ~~l~sgs~d~~i~iWd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~  305 (479)
                      .+|+.+.. +.|+.+++.....     ...+.........+++++++..|+.+ ..++.|..+|+.........  ....
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~--~~~~   78 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTII--RQDL   78 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE--CTTC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEE--ECCC
Confidence            34444443 3677777765432     11122122356789999976655544 45689999998654321111  0112


Q ss_pred             CCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC-
Q psy8895         306 SGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-  383 (479)
Q Consensus       306 ~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-  383 (479)
                      .....+++++.+..+..+. ..+.|                         .++++..................++++|+ 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I-------------------------~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~  133 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRI-------------------------EVAKMDGTQRRVLFDTGLVNPRGIVTDPVR  133 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEE-------------------------EEEETTSCSCEEEECSSCSSEEEEEEETTT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEE-------------------------EEEEcCCCCEEEEEECCCCCccEEEEeeCC
Confidence            3567788887655554332 23344                         44444321111111111234588999995 


Q ss_pred             CcEEEEEcC---CcEEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCCCe
Q psy8895         384 LYMFASASP---DNIKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       384 ~~~l~s~s~---d~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~~~  445 (479)
                      +.++++...   +.|..++.... ....+ .........+++++++ . +++-...++|..+|..++.
T Consensus       134 g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~  200 (267)
T 1npe_A          134 GNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (267)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             CEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence            666666544   34777776432 22222 2223457889999864 4 4566667899999987543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.74  E-value=0.0029  Score=56.13  Aligned_cols=178  Identities=11%  Similarity=0.029  Sum_probs=112.2

Q ss_pred             CEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       263 ~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      ....+.|+. +.+.++.+.++.|+.+|+++++.....  .+...-...+++.  +.                        
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~------------------------  106 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GE------------------------  106 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SS------------------------
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CC------------------------
Confidence            457888874 556678888999999999877654322  1110000111111  11                        


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCC-cEEEEEcCCcEEEEeCCCCeEEeeecC--Cc---ceE
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTL-YMFASASPDNIKQWKCPEGKFIQNLPG--HN---AII  416 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~i~~w~~~~~~~~~~~~~--h~---~~v  416 (479)
                      ...+..-.++.+.++|..+.+.+.++...... ..++  +++ .++++.+.+.+.++|..+.+.+.++.-  +.   ..+
T Consensus       107 ~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             CEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            11223345788999999999999998753322 3444  444 455555555699999999988877653  22   235


Q ss_pred             EEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecC-----CCCCceEEeeehhhhc
Q psy8895         417 NSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSG-----FPKPSVFFFFLAFSYL  473 (479)
Q Consensus       417 ~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  473 (479)
                      +.+.+. +| ..+....+..|.+-|.++|+.++.+.+..+..     .++...+.--+|+++.
T Consensus       184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~  245 (268)
T 3nok_A          184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG  245 (268)
T ss_dssp             EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred             cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence            666666 55 45555568899999999999999998874321     2223334455888875

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.73  E-value=0.005  Score=54.05  Aligned_cols=191  Identities=13%  Similarity=0.040  Sum_probs=116.9

Q ss_pred             EEEEecCCc--CEEEEEEcCCCCEEEEEECC--CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895         254 KLSLTGHVG--SVRGLTVSPRHPYLFSCGDD--RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV  329 (479)
Q Consensus       254 ~~~~~~h~~--~v~~v~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i  329 (479)
                      +.++ .|..  ....+.|++ +.+..+.+.+  ..|+.+|+++++...... .....--..++..  +..+         
T Consensus        12 ~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~~fgeGi~~~--~~~l---------   77 (243)
T 3mbr_X           12 VKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPPYFGAGIVAW--RDRL---------   77 (243)
T ss_dssp             EEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTTCCEEEEEEE--TTEE---------
T ss_pred             EEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCCcceeEEEEe--CCEE---------
Confidence            3344 4643  567999987 5566666765  489999998776432210 0000000111111  1111         


Q ss_pred             EEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee
Q psy8895         330 KLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL  409 (479)
Q Consensus       330 ~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~  409 (479)
                                     ....-.++.+.++|..+.+.+.++...... ..++.. ...++++-+.+.+.++|..+.+.+.++
T Consensus        78 ---------------y~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           78 ---------------IQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             ---------------EEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             ---------------EEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence                           122345788999999999999998754332 344422 345666666667999999998887776


Q ss_pred             cCC--c---ceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEeEecCC-----CCCceEEeeehhhhc-ccc
Q psy8895         410 PGH--N---AIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGF-----PKPSVFFFFLAFSYL-NRV  476 (479)
Q Consensus       410 ~~h--~---~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~  476 (479)
                      +-.  .   ..++.+.+. ++ ..+....+..|.+-|.++|+.+..+.+..+...     ++...+.--+|+++. +|+
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l  218 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRL  218 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence            542  1   245666655 55 455555678999999999999999988754322     123334555888875 443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.72  E-value=0.00057  Score=67.89  Aligned_cols=199  Identities=9%  Similarity=0.093  Sum_probs=116.0

Q ss_pred             ccEEEEEE-c-CCCcEEEEEeC------------------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE
Q psy8895         220 GWVRCVAV-E-PGNEWFATGSA------------------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC  279 (479)
Q Consensus       220 ~~v~~~~~-~-~~g~~l~sgs~------------------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~  279 (479)
                      .....+++ + |++++++.++.                  ++.+.+.|..+.+...++.--. .-..++++|+|+++++.
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt  212 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST  212 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence            34667777 5 89999888852                  4579999999998877765322 23567899999999887


Q ss_pred             ECCC---------------cEEEEECCCCCcccCCCC-----------------------CCCCCCeEEEEEeCCCCEEE
Q psy8895         280 GDDR---------------TVKCWDLEYNKAPVQPGS-----------------------MDSESGIFSMTFDNSGSRLI  321 (479)
Q Consensus       280 ~~d~---------------~i~~wd~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~~~~~~l~  321 (479)
                      +.+.               .+.+.|+.........+.                       ........++.++|+|+++ 
T Consensus       213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v-  291 (595)
T 1fwx_A          213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHL-  291 (595)
T ss_dssp             ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEE-
T ss_pred             ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEE-
Confidence            7553               244444321100000000                       0000011223444444433 


Q ss_pred             EEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe------------eEEEEccCCCceEEEEEeCCCcEEEE
Q psy8895         322 TTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK------------SLCTLTNHKKSVRSVALHPTLYMFAS  389 (479)
Q Consensus       322 ~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~------------~~~~~~~h~~~v~~i~~~~~~~~l~s  389 (479)
                                             ++++..+.+|.++|+.+.+            .+.+++- ...-+.++|+|++..+++
T Consensus       292 -----------------------~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t  347 (595)
T 1fwx_A          292 -----------------------CVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTS  347 (595)
T ss_dssp             -----------------------EEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEE
T ss_pred             -----------------------EEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEE
Confidence                                   3344456677777777542            2333332 234688999999976777


Q ss_pred             EcCCc-EEEEeCCC----------CeEEeeecCCcceE-EE----EEEcCCC-EEEEEe---CCCcE----------EEE
Q psy8895         390 ASPDN-IKQWKCPE----------GKFIQNLPGHNAII-NS----ICVNNEG-VLVSGA---DNGTM----------CFW  439 (479)
Q Consensus       390 ~s~d~-i~~w~~~~----------~~~~~~~~~h~~~v-~~----l~~~~~~-~l~sg~---~dg~i----------~lW  439 (479)
                      .-.++ +..||+.+          .+.+.++..|-.+- .+    ..+++|| +|++..   .|+-+          .++
T Consensus       348 ~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~  427 (595)
T 1fwx_A          348 LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLI  427 (595)
T ss_dssp             ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEE
T ss_pred             EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEE
Confidence            77665 88999876          55677776664321 11    1347888 666543   24331          889


Q ss_pred             ecCCC
Q psy8895         440 DWRTG  444 (479)
Q Consensus       440 d~~~~  444 (479)
                      |+..+
T Consensus       428 dis~~  432 (595)
T 1fwx_A          428 DISGD  432 (595)
T ss_dssp             ECSSS
T ss_pred             EcCCC
Confidence            99544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.66  E-value=0.044  Score=52.23  Aligned_cols=208  Identities=11%  Similarity=0.002  Sum_probs=119.4

Q ss_pred             CccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcc
Q psy8895         219 LGWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       219 ~~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~  296 (479)
                      ......++|++.+ .++++-...+.|..+++..+.....+.........+++++.+..| ++-...+.|.+.++......
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~  194 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK  194 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE
Confidence            3457889999754 455565567889999988765443333223345678888755554 44455678888877543221


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceE
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVR  376 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~  376 (479)
                      ...  .........++++|.+..+..+....                       .+.|...++............-..-+
T Consensus       195 ~l~--~~~l~~P~giavdp~~g~ly~td~~~-----------------------~~~I~r~~~dG~~~~~~~~~~~~~Pn  249 (386)
T 3v65_B          195 VLL--WQSLEKPRAIALHPMEGTIYWTDWGN-----------------------TPRIEASSMDGSGRRIIADTHLFWPN  249 (386)
T ss_dssp             EEE--CSSCSCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred             Eee--cCCCCCCcEEEEEcCCCeEEEeccCC-----------------------CCEEEEEeCCCCCcEEEEECCCCCee
Confidence            111  11123456778887665554432211                       13344444432221111112223457


Q ss_pred             EEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         377 SVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       377 ~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .|+++|+ +.++.+-+.. .|..++.........+.........+++..+..+++-...+.|..+|..+|...+.+.
T Consensus       250 Glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          250 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            8999975 4555555444 4888887643333333333344567777555577777788899999977887666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.62  E-value=0.045  Score=51.36  Aligned_cols=206  Identities=11%  Similarity=0.010  Sum_probs=118.8

Q ss_pred             ccEEEEEEcCCCc-EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNE-WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~-~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      .....++|++.++ ++++-...+.|..+++..+.....+.........+++++.+..| ++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            4578899997554 45555567889999988765443333223345688998755544 455566789999986433211


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCceE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSVR  376 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v~  376 (479)
                      ..  .........++++|.+..+..+....                       .+.|...++.... ...+ ...-..-+
T Consensus       153 l~--~~~l~~P~~iavdp~~g~ly~td~~~-----------------------~~~I~r~~~dG~~-~~~~~~~~~~~Pn  206 (349)
T 3v64_C          153 LL--WQSLEKPRAIALHPMEGTIYWTDWGN-----------------------TPRIEASSMDGSG-RRIIADTHLFWPN  206 (349)
T ss_dssp             EE--CTTCSCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCS-CEESCCSSCSCEE
T ss_pred             EE--eCCCCCcceEEEecCcCeEEEeccCC-----------------------CCEEEEEeCCCCC-cEEEEECCCCCcc
Confidence            11  11223456788887655554332211                       1334444443221 1122 11223457


Q ss_pred             EEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         377 SVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       377 ~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .|+++|+ +.++.+-+.. .|..++.........+.........+++..+..+++-...+.|...|..+|...+.+.
T Consensus       207 Gla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          207 GLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             eEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            8999975 4555555444 4888887643333223333344567777554466777778889988877787665554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.61  E-value=0.017  Score=60.42  Aligned_cols=68  Identities=9%  Similarity=-0.094  Sum_probs=40.7

Q ss_pred             EEcCCCcEEEEEeCC-----CeEEEEECCCCce--EEEEe-cCCcCEEEEEEcCCCCEEEEEE---CCCcEEEEECCCC
Q psy8895         226 AVEPGNEWFATGSAD-----KIIKVWDLATGKL--KLSLT-GHVGSVRGLTVSPRHPYLFSCG---DDRTVKCWDLEYN  293 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d-----~~i~iWd~~~~~~--~~~~~-~h~~~v~~v~~~~~~~~l~s~~---~d~~i~~wd~~~~  293 (479)
                      +|+|||+.|+..+.|     ..|.++++.++..  ...+. ........+.++||+++|+..+   ....|.++|+...
T Consensus       227 ~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          227 VWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             EEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            455666555444443     2566777766532  22333 2233466789999999887654   2346788888754

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.53  E-value=0.071  Score=56.04  Aligned_cols=222  Identities=12%  Similarity=0.059  Sum_probs=136.0

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe--------------cCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT--------------GHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~--------------~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      ...|.++...++|.+.+ |+..+-|.++|..++.......              -....|.++...++|.+. .|..++-
T Consensus       257 ~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSC
T ss_pred             CceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCe
Confidence            35688998888776544 5554557788987765432111              123579999999888654 4566677


Q ss_pred             EEEEECCCCCcccCC-------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------C---------
Q psy8895         285 VKCWDLEYNKAPVQP-------GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------T---------  339 (479)
Q Consensus       285 i~~wd~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------~---------  339 (479)
                      |..++..........       ........|.++..++++.. -.|+.++-+..++.....         .         
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~  413 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSL  413 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEE
Confidence            888887644321110       01112346888888877664 455544556666543210         0         


Q ss_pred             -CCCCeEEEEeCCCcEEEEECCCCeeEEEEc---cCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCC---
Q psy8895         340 -EESHPVITGSHDCTIRLWDLAAGKSLCTLT---NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGH---  412 (479)
Q Consensus       340 -~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~---~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h---  412 (479)
                       .....+-.|+.++-+..+|..+++.. .+.   .....|.++...+++.+.++.. +.+..++..+++........   
T Consensus       414 ~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~  491 (781)
T 3v9f_A          414 KDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQ  491 (781)
T ss_dssp             ECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSS
T ss_pred             ECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccc
Confidence             01223556777677888887766432 222   1345799999999998888776 67999998776654332222   


Q ss_pred             --cceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895         413 --NAIINSICVNNEGVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       413 --~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~  445 (479)
                        ...|.+++..+++.|-.|..++-+..||.+++.
T Consensus       492 ~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          492 LLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCE
T ss_pred             cccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCe
Confidence              357899999988866556664446778877653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=0.12  Score=54.28  Aligned_cols=221  Identities=9%  Similarity=0.034  Sum_probs=136.2

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-------cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-------GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-------~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ..|.++...++|.+.+.. .+ -+.+||..+++......       -....|.++...+++.+. .|...+-|.++|...
T Consensus       211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~  287 (781)
T 3v9f_A          211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQQ  287 (781)
T ss_dssp             SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETTC
T ss_pred             CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCCC
Confidence            468899888888766544 44 58889987765432111       123569999998888654 455545688888765


Q ss_pred             CCcccCCC------------CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------C--C-----
Q psy8895         293 NKAPVQPG------------SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------T--E-----  340 (479)
Q Consensus       293 ~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~--~-----  340 (479)
                      ........            ..-....|.++..+.++. +-.|+.++-|..++.....             .  .     
T Consensus       288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~  366 (781)
T 3v9f_A          288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS  366 (781)
T ss_dssp             C---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE
T ss_pred             CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE
Confidence            43211100            011235688888888776 4556655556666543211             0  0     


Q ss_pred             -----CCCeEEEEeCCCcEEEEECCCCeeEEEE---ccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec--
Q psy8895         341 -----ESHPVITGSHDCTIRLWDLAAGKSLCTL---TNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP--  410 (479)
Q Consensus       341 -----~~~~l~sgs~d~~v~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~--  410 (479)
                           ....+-.|+.++-+..+|..+++...-.   ......|.++...+++.+.++...+.+..++..+++......  
T Consensus       367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~  446 (781)
T 3v9f_A          367 SVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEK  446 (781)
T ss_dssp             EEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTT
T ss_pred             EEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCC
Confidence                 1123556676677888887654322110   123467999999989998887666679999987776543322  


Q ss_pred             CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCe
Q psy8895         411 GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       411 ~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~  445 (479)
                      -....|.+++..+++.|-.|.. +-+..+|.+++.
T Consensus       447 ~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          447 NELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKK  480 (781)
T ss_dssp             TCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSS
T ss_pred             CCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCe
Confidence            1346789999998886655666 557888887764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.46  E-value=0.053  Score=48.11  Aligned_cols=209  Identities=10%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             EecCCCccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEEC
Q psy8895         214 VISGHLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~  290 (479)
                      .+.|=.+.+..++++|+++.| +....++.|...|.. ++.+..+.  +. .....+++.+++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            455666789999999976655 456778888888987 77766653  22 35678889898887777656778888887


Q ss_pred             CCCCcc-----c--CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         291 EYNKAP-----V--QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       291 ~~~~~~-----~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                      ......     .  .......+.....++++|.++.+.++.......+|..+.. .. .         ..+.+-+...  
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~-~~-~---------~~l~i~~~~~--  165 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGL-LS-S---------NELHISKDKA--  165 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEEST-TC-S---------SCCEEEECHH--
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEccc-cc-C---------Cceeeecchh--
Confidence            543321     0  0111234556789999999887777665555455443210 00 0         0111111000  


Q ss_pred             eEEEEccCCCceEEEEEeCCC-cEEEEEcCCc-EEEEeCCCCeEEeee--c-CCc------ceEEEEEEcCCCEEEEEeC
Q psy8895         364 SLCTLTNHKKSVRSVALHPTL-YMFASASPDN-IKQWKCPEGKFIQNL--P-GHN------AIINSICVNNEGVLVSGAD  432 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~-~~l~s~s~d~-i~~w~~~~~~~~~~~--~-~h~------~~v~~l~~~~~~~l~sg~~  432 (479)
                       + .-..+-..+.+++++|.. .+++.+.... +...|.. |+.+..+  . +..      ..-..++|.++|.|...++
T Consensus       166 -~-~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE  242 (255)
T 3qqz_A          166 -L-QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE  242 (255)
T ss_dssp             -H-HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred             -h-ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence             0 000122346889999965 4444444444 7788864 5554443  3 211      2567899999996555577


Q ss_pred             CCcEEEEe
Q psy8895         433 NGTMCFWD  440 (479)
Q Consensus       433 dg~i~lWd  440 (479)
                      -..+..+.
T Consensus       243 ~n~~y~f~  250 (255)
T 3qqz_A          243 PNRFYRFT  250 (255)
T ss_dssp             TTEEEEEE
T ss_pred             CceEEEEE
Confidence            66555554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.46  E-value=0.011  Score=59.54  Aligned_cols=168  Identities=15%  Similarity=0.037  Sum_probs=97.7

Q ss_pred             eEEEEECCCCceEEEEecC--C--------cCEEEEEEcCCCC---EEEEEECCCcEEEEECCCCCcccCCCCCC-----
Q psy8895         242 IIKVWDLATGKLKLSLTGH--V--------GSVRGLTVSPRHP---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD-----  303 (479)
Q Consensus       242 ~i~iWd~~~~~~~~~~~~h--~--------~~v~~v~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-----  303 (479)
                      .|..+|.++|+.+..++..  .        .++. +....+|+   .++.++.+|.+.++|.++++.........     
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~  351 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccc
Confidence            6999999999998887632  1        2222 22234663   56678889999999988776532210000     


Q ss_pred             -----CC-CCe--------------------------EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE------
Q psy8895         304 -----SE-SGI--------------------------FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV------  345 (479)
Q Consensus       304 -----~~-~~i--------------------------~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l------  345 (479)
                           .. ..+                          ..++++|+...+.+...+....++............+      
T Consensus       352 ~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~  431 (571)
T 2ad6_A          352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccccee
Confidence                 00 000                          1356777777777776654444443322111111111      


Q ss_pred             EEE------eCCCcEEEEECCCCeeEEEEccCCCceEEEEE-eCCCcEEEEEcCCcEEEEeCCCCeEEeeecC
Q psy8895         346 ITG------SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL-HPTLYMFASASPDNIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       346 ~sg------s~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~-~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~  411 (479)
                      ..+      ..++.+..||+.+++.+.+++... .+....+ ..++.+++...++.+..+|..+|+.+.+++.
T Consensus       432 ~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            000      246899999999999988875322 2222222 2345566644455699999999999877653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.39  E-value=0.042  Score=50.99  Aligned_cols=189  Identities=14%  Similarity=0.128  Sum_probs=101.2

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeE-EEEECCCCc-eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKII-KVWDLATGK-LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i-~iWd~~~~~-~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      +.+..+.+.+++..++.+. ++.| +-.|  .|+ .......+...+..+++.+++.+++.+...+..+.+|-. +.. .
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t-W  196 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA-W  196 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS-C
T ss_pred             CCeEEEEEECCCCEEEEeC-CccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc-e
Confidence            3456677766677666654 5543 2222  232 222334455678999999998877665444444444421 110 0


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc----cCCC
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT----NHKK  373 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~----~h~~  373 (479)
                      ..........+..+.+.+++..++. +.++.                         +++.+...++....+.    .+..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~G~-------------------------~~~s~~D~G~tW~~~~~~~~~~~~  250 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWMI-VNGGK-------------------------IAFSDPDNSENWGELLSPLRRNSV  250 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEEE-ETTTE-------------------------EEEEETTEEEEECCCBCTTSSCCS
T ss_pred             eECCCCCCCccceeEECCCCCEEEE-eCCce-------------------------EEEecCCCCCeeEeccCCcccCCc
Confidence            0000112345667777666654432 23333                         3332211111111111    1223


Q ss_pred             ceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec---CCcceEEEEEEcCCCEEEEEeCCCcEEEEe
Q psy8895         374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP---GHNAIINSICVNNEGVLVSGADNGTMCFWD  440 (479)
Q Consensus       374 ~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~---~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd  440 (479)
                      .+.++.+.+++.+++.+..+.+ .+..+.|+....+.   .....+..+.+.+++.++.++.+|.|.-++
T Consensus       251 ~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          251 GFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             CEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             ceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            5788999888888888876666 44455555444333   233456777777677777788899887665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.38  E-value=0.085  Score=48.69  Aligned_cols=206  Identities=9%  Similarity=-0.010  Sum_probs=117.6

Q ss_pred             ccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCCCcc
Q psy8895         220 GWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       220 ~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~  296 (479)
                      .....+.|.+. +.++.+-...+.|..+++..+.. ...+.........+++.+.+..| ++-...+.|.+++++.....
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            34668889875 55556666678899999876632 11222222345678888755444 45456678999998643321


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCCCce
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHKKSV  375 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~~~v  375 (479)
                      ...  .........++++|.+..+..+...                       ..+.|...++.... ...+ ...-..-
T Consensus       115 ~l~--~~~~~~P~giavdp~~g~ly~td~~-----------------------~~~~I~r~~~dG~~-~~~~~~~~l~~P  168 (318)
T 3sov_A          115 VLF--WQELDQPRAIALDPSSGFMYWTDWG-----------------------EVPKIERAGMDGSS-RFIIINSEIYWP  168 (318)
T ss_dssp             EEE--CSSCSSEEEEEEEGGGTEEEEEECS-----------------------SSCEEEEEETTSCS-CEEEECSSCSCE
T ss_pred             EEE--eCCCCCccEEEEeCCCCEEEEEecC-----------------------CCCEEEEEEcCCCC-eEEEEECCCCCc
Confidence            111  0122345677888765555443311                       11233333333211 1111 1112345


Q ss_pred             EEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         376 RSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       376 ~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      +.|+++|+ +.++.+-+.. .|..++...........+.......+++..+..+.+-...+.|..+|..+|...+.+.
T Consensus       169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            78999985 4555555444 4888887643332222333345567777766677777788999999988887665554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.38  E-value=0.0057  Score=63.10  Aligned_cols=188  Identities=11%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             EEEEEcCCCcEEEEEeCCC-------------------eEEEEECCCCceEEEEec--CC-------cCEEEEEEcCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADK-------------------IIKVWDLATGKLKLSLTG--HV-------GSVRGLTVSPRHP  274 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~-------------------~i~iWd~~~~~~~~~~~~--h~-------~~v~~v~~~~~~~  274 (479)
                      ..++++|++..++.++.++                   .|..+|.++|+.+..++.  |.       .+.....+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            3467888888888887765                   499999999999988764  32       2233233334564


Q ss_pred             ---EEEEEECCCcEEEEECCCCCcccCCCCCC---------CCCC-------------------------eEEEEEeCCC
Q psy8895         275 ---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD---------SESG-------------------------IFSMTFDNSG  317 (479)
Q Consensus       275 ---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~-------------------------i~~~~~~~~~  317 (479)
                         .++.++.+|.+.++|.++++.........         ....                         -..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               57888999999999998876541100000         0000                         0014556655


Q ss_pred             CEEEEEeCCCeEEEEeCC-CCC------CCC----CCeEE-EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe-CCC
Q psy8895         318 SRLITTEADKTVKLYKED-DSA------TEE----SHPVI-TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH-PTL  384 (479)
Q Consensus       318 ~~l~~~~~d~~i~~~~~~-~~~------~~~----~~~l~-sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~-~~~  384 (479)
                      ..+.+...+-.... ... ...      ...    ....+ ....++.|..||+.+++.+.+.+.+.. .....+. .++
T Consensus       393 g~~yv~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg  470 (668)
T 1kv9_A          393 GLVYIPYQEVPGVY-RNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGN  470 (668)
T ss_dssp             TEEEEEEEECCEEE-CCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTT
T ss_pred             CEEEEeccccceEe-eeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCC
Confidence            55554333221111 111 000      000    00011 233568999999999999888764332 2222222 334


Q ss_pred             cEEEEEcCCcEEEEeCCCCeEEeeecCC
Q psy8895         385 YMFASASPDNIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       385 ~~l~s~s~d~i~~w~~~~~~~~~~~~~h  412 (479)
                      .+|++..++.++.||..+|+.+..+...
T Consensus       471 ~vf~g~~dg~l~a~d~~tG~~l~~~~~~  498 (668)
T 1kv9_A          471 LVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (668)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEECCcccchhhhhhcChhheEecCC
Confidence            4454433446999999999998776543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.35  E-value=0.02  Score=57.93  Aligned_cols=201  Identities=14%  Similarity=0.107  Sum_probs=109.6

Q ss_pred             EEEEcCCCcEEEEEeC--------------------C----CeEEEEECCCCceEEEEec--CC--------cCEEEEEE
Q psy8895         224 CVAVEPGNEWFATGSA--------------------D----KIIKVWDLATGKLKLSLTG--HV--------GSVRGLTV  269 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~--------------------d----~~i~iWd~~~~~~~~~~~~--h~--------~~v~~v~~  269 (479)
                      .++++|+..+++.+..                    |    +.|..+|.++|+.+..++.  |.        .++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            4567777777665552                    2    5899999999999988753  32        1222 222


Q ss_pred             c-CCCC---EEEEEECCCcEEEEECCCCCcccCCCCCC-------------------------------CCCC-------
Q psy8895         270 S-PRHP---YLFSCGDDRTVKCWDLEYNKAPVQPGSMD-------------------------------SESG-------  307 (479)
Q Consensus       270 ~-~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-------------------------------~~~~-------  307 (479)
                      . .+|+   .++.++.+|.+.++|.++++.........                               ....       
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            2 4664   67788999999999988776432110000                               0000       


Q ss_pred             -----eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeE----EE----EeCCCcEEEEECCCCeeEEEEccCCCc
Q psy8895         308 -----IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV----IT----GSHDCTIRLWDLAAGKSLCTLTNHKKS  374 (479)
Q Consensus       308 -----i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l----~s----gs~d~~v~iwd~~~~~~~~~~~~h~~~  374 (479)
                           ...++++|....+.+...+-...++............+    ..    ...++.+..||+.+++.+.+.+.+...
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~  488 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL  488 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence                 01235555555555544433333333221111111000    00    124689999999999998876543221


Q ss_pred             eEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeecCCcceE-EEEEEcCCC
Q psy8895         375 VRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAII-NSICVNNEG  425 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~~h~~~v-~~l~~~~~~  425 (479)
                      ........++.+|++..++.++.+|..+|+.+-+++...+.. .-+.+..+|
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G  540 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG  540 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             cccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECC
Confidence            111111234555554444469999999999987665433221 123444566

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.28  E-value=0.14  Score=49.00  Aligned_cols=209  Identities=15%  Similarity=0.071  Sum_probs=118.0

Q ss_pred             CCccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895         218 HLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE  291 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~  291 (479)
                      ....+..++|++.++. +++-...+.|..+++...    .....+.........+++.+.+..|+ +-...+.|.+.+++
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            4567789999985554 455556788988888652    22233333344678899988544444 44566788888876


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      ........  .........++++|.+..+..+...                       ..+.|...++........+...
T Consensus       190 g~~~~~l~--~~~~~~P~~iavdp~~g~ly~td~~-----------------------~~~~I~~~~~dG~~~~~~~~~~  244 (400)
T 3p5b_L          190 GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWG-----------------------TPAKIKKGGLNGVDIYSLVTEN  244 (400)
T ss_dssp             TCSEEEEE--ECSSCCEEEEEEETTTTEEEEEECS-----------------------SSCCEEEEETTSCSCEEEECSS
T ss_pred             CCceEEEE--eCCCCCcceEEEecccCeEEEEeCC-----------------------CCCEEEEEeCCCCccEEEEECC
Confidence            44321111  0122345677788765555443211                       0123444444322221122222


Q ss_pred             CCceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecC--CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895         372 KKSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       372 ~~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      -...+.|+++++. .++.+-+.. .|...+............  .-.....+++..+..+.+-...+.|..+|..+|..+
T Consensus       245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCce
Confidence            2456889999765 454554433 488888754433222222  223455677766667777778889999998888766


Q ss_pred             EEEE
Q psy8895         448 QRLQ  451 (479)
Q Consensus       448 ~~~~  451 (479)
                      ..+.
T Consensus       325 ~~i~  328 (400)
T 3p5b_L          325 NLLA  328 (400)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.23  E-value=0.036  Score=56.05  Aligned_cols=184  Identities=11%  Similarity=0.023  Sum_probs=105.5

Q ss_pred             EEEcCCCcEEEEEeCC----------------CeEEEEECCCCceEEEEecCC----------cCEEEEEEc-CCC---C
Q psy8895         225 VAVEPGNEWFATGSAD----------------KIIKVWDLATGKLKLSLTGHV----------GSVRGLTVS-PRH---P  274 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d----------------~~i~iWd~~~~~~~~~~~~h~----------~~v~~v~~~-~~~---~  274 (479)
                      .++.++..+++.+..+                +.|..+|.++|+.+..++...          .++. +... .+|   +
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARK  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEE
Confidence            4555666666666554                379999999999988876432          1222 2222 466   4


Q ss_pred             EEEEEECCCcEEEEECCCCCcccCCCCCC----------CCCC---------------------------eEEEEEeCCC
Q psy8895         275 YLFSCGDDRTVKCWDLEYNKAPVQPGSMD----------SESG---------------------------IFSMTFDNSG  317 (479)
Q Consensus       275 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~----------~~~~---------------------------i~~~~~~~~~  317 (479)
                      .++.++.+|.+.++|.++++.........          ..+.                           --.++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            67778899999999998776542211000          0000                           0135677877


Q ss_pred             CEEEEEeCCCeEEEEeCCCCCCCCCCe------EEEE--e------CCCcEEEEECCCCeeEEEEccCCCceE-EEEEeC
Q psy8895         318 SRLITTEADKTVKLYKEDDSATEESHP------VITG--S------HDCTIRLWDLAAGKSLCTLTNHKKSVR-SVALHP  382 (479)
Q Consensus       318 ~~l~~~~~d~~i~~~~~~~~~~~~~~~------l~sg--s------~d~~v~iwd~~~~~~~~~~~~h~~~v~-~i~~~~  382 (479)
                      ..+++...+....+.............      +..+  +      .++.+..||+.+++.+.+.+.. .+.. ......
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~ta  483 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATA  483 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEET
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEec
Confidence            777766554333322221111111111      1110  1      4589999999999988876422 1111 111123


Q ss_pred             CCcEEEEEcCCcEEEEeCCCCeEEeeec
Q psy8895         383 TLYMFASASPDNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       383 ~~~~l~s~s~d~i~~w~~~~~~~~~~~~  410 (479)
                      .+.+|++..++.++.+|..+|+.+-+.+
T Consensus       484 gg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          484 GDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            4555554444569999999999887654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.17  E-value=0.15  Score=47.02  Aligned_cols=206  Identities=16%  Similarity=0.075  Sum_probs=114.2

Q ss_pred             ccEEEEEEcCCC-cEEEEEeCCCeEEEEECCC----CceEEEEecCCcCEEEEEEcCCCCEE-EEEECCCcEEEEECCCC
Q psy8895         220 GWVRCVAVEPGN-EWFATGSADKIIKVWDLAT----GKLKLSLTGHVGSVRGLTVSPRHPYL-FSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       220 ~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~l-~s~~~d~~i~~wd~~~~  293 (479)
                      .....++|++.+ .++++-...+.|..+++..    ......+.........+++++.+..| ++-...+.|.+.|++..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            456789999865 4555656678999999876    22222233222345788998755544 45456788999998643


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-ccCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-TNHK  372 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~~h~  372 (479)
                      ......  .........++++|.+..+..+....                       .+.|...++.. +....+ ...-
T Consensus       110 ~~~~~~--~~~~~~P~~iavdp~~g~ly~~d~~~-----------------------~~~I~~~~~dG-~~~~~~~~~~~  163 (316)
T 1ijq_A          110 KRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGT-----------------------PAKIKKGGLNG-VDIYSLVTENI  163 (316)
T ss_dssp             SEEEEE--ECTTCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTS-CCEEEEECSSC
T ss_pred             ceEEEE--ECCCCCcceEEeCCCCCEEEEEccCC-----------------------CCeEEEEcCCC-CCeEEEEECCC
Confidence            221111  01123456777887665554433210                       12333334332 111222 1122


Q ss_pred             CceEEEEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeec--CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895         373 KSVRSVALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLP--GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       373 ~~v~~i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      ...+.+++++++ .++.+-+.. .|...+...........  ........+++..+..+++-...++|..+|..+|..++
T Consensus       164 ~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~  243 (316)
T 1ijq_A          164 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  243 (316)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCE
T ss_pred             CCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceE
Confidence            346789999864 455555444 58888886432221111  12234566777654466777778899999988887665


Q ss_pred             EEE
Q psy8895         449 RLQ  451 (479)
Q Consensus       449 ~~~  451 (479)
                      .+.
T Consensus       244 ~i~  246 (316)
T 1ijq_A          244 LLA  246 (316)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.12  E-value=0.17  Score=46.88  Aligned_cols=200  Identities=15%  Similarity=0.246  Sum_probs=110.0

Q ss_pred             CCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCC----C---EEE-EEEC--CCcEEEEECC--CCCcc
Q psy8895         229 PGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH----P---YLF-SCGD--DRTVKCWDLE--YNKAP  296 (479)
Q Consensus       229 ~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~----~---~l~-s~~~--d~~i~~wd~~--~~~~~  296 (479)
                      |...+++...+.+-+.++|+ +|+.+..+..  +.++.+.+-|+-    +   .++ +.-.  +++|.+|++.  +... 
T Consensus        38 p~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l-  113 (355)
T 3amr_A           38 PQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL-  113 (355)
T ss_dssp             GGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-
T ss_pred             CCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-
Confidence            34556777777889999999 7888877753  567777776632    1   222 3334  6899999763  3221 


Q ss_pred             cCCCCC--C--CC-CCeEEEEE--eCC-CC-EEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEE
Q psy8895         297 VQPGSM--D--SE-SGIFSMTF--DNS-GS-RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCT  367 (479)
Q Consensus       297 ~~~~~~--~--~~-~~i~~~~~--~~~-~~-~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~  367 (479)
                      ......  .  .. ..+.-+++  ++. +. ++++...++.+..|++.            ...+++      .+.+.+++
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~------------~~~~g~------~~~~lVR~  175 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELK------------ADKNGY------ISGKKVRA  175 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEE------------ECTTSC------EEEEEEEE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEE------------eCCCCc------ccceEEEE
Confidence            111000  0  00 11222222  442 22 34444444444444321            111111      12356667


Q ss_pred             EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCC-----CCeEEeeec-CC-cceEEEEEEc--CC--CEEEEEe-CCC
Q psy8895         368 LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCP-----EGKFIQNLP-GH-NAIINSICVN--NE--GVLVSGA-DNG  434 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~-----~~~~~~~~~-~h-~~~v~~l~~~--~~--~~l~sg~-~dg  434 (479)
                      +.- .+.+..+...+....|..+.++ .|..++..     +++.+.... ++ ...+..|++-  ++  ++|++.+ .+.
T Consensus       176 f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~  254 (355)
T 3amr_A          176 FKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNS  254 (355)
T ss_dssp             EEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGT
T ss_pred             ecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCC
Confidence            653 3568888998876655556555 45555543     345555443 22 2367888773  33  4554444 678


Q ss_pred             cEEEEecC-CCeEEEEEE
Q psy8895         435 TMCFWDWR-TGYNFQRLQ  451 (479)
Q Consensus       435 ~i~lWd~~-~~~~~~~~~  451 (479)
                      +..+||.+ +.+.+.+++
T Consensus       255 s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          255 SYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEEEEESSTTCCEEEEEE
T ss_pred             EEEEEECCCCCcEEEEEE
Confidence            99999997 666666664

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=96.79  E-value=0.18  Score=46.44  Aligned_cols=183  Identities=9%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC--CCC---------------CCCCCeEEEEEeCCCCEEEEEeCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP--GSM---------------DSESGIFSMTFDNSGSRLITTEAD  326 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~---------------~~~~~i~~~~~~~~~~~l~~~~~d  326 (479)
                      ..++++++++..++++..++.|..||..........  ...               ........++++++...+.++...
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~  100 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY  100 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence            456788888886777778888999987653321100  000               001246788888733455555545


Q ss_pred             CeEEEEeCCCCCC------CC-----CCeEEEEeC-CCcEE---------------------------EEECCCCeeEEE
Q psy8895         327 KTVKLYKEDDSAT------EE-----SHPVITGSH-DCTIR---------------------------LWDLAAGKSLCT  367 (479)
Q Consensus       327 ~~i~~~~~~~~~~------~~-----~~~l~sgs~-d~~v~---------------------------iwd~~~~~~~~~  367 (479)
                      +.+..++......      ..     ...-+.... ||.+.                           .+|..+++....
T Consensus       101 ~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~  180 (322)
T 2fp8_A          101 YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLL  180 (322)
T ss_dssp             TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEe
Confidence            5566666542110      00     000122223 44444                           444433332111


Q ss_pred             EccCCCceEEEEEeCCCc-EEEEEcC-CcEEEEeCCCC---e--EEeeecCCcceEEEEEEcCCC-EEEEEeC-------
Q psy8895         368 LTNHKKSVRSVALHPTLY-MFASASP-DNIKQWKCPEG---K--FIQNLPGHNAIINSICVNNEG-VLVSGAD-------  432 (479)
Q Consensus       368 ~~~h~~~v~~i~~~~~~~-~l~s~s~-d~i~~w~~~~~---~--~~~~~~~h~~~v~~l~~~~~~-~l~sg~~-------  432 (479)
                      ... ......|+++|++. ++++.+. +.|..++....   +  ....+.   + ...++++++| ++++...       
T Consensus       181 ~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~va~~~~~~~~~~  255 (322)
T 2fp8_A          181 LKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFWVSSSEELDGNMH  255 (322)
T ss_dssp             EEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEEEEEEEETTSSTT
T ss_pred             ccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEEEEecCccccccc
Confidence            111 12345789999986 5555444 46888887642   2  122222   2 6778999988 4444333       


Q ss_pred             ---CCcEEEEecCCCeEEEEEEE
Q psy8895         433 ---NGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       433 ---dg~i~lWd~~~~~~~~~~~~  452 (479)
                         .+.|..+|. .|+.+..+..
T Consensus       256 ~~~~~~v~~~d~-~G~~~~~~~~  277 (322)
T 2fp8_A          256 GRVDPKGIKFDE-FGNILEVIPL  277 (322)
T ss_dssp             SCEEEEEEEECT-TSCEEEEEEC
T ss_pred             CCCccEEEEECC-CCCEEEEEEC
Confidence               466888886 4776666554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.78  E-value=0.67  Score=48.42  Aligned_cols=208  Identities=16%  Similarity=0.072  Sum_probs=116.5

Q ss_pred             CCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCC----ceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895         218 HLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATG----KLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE  291 (479)
Q Consensus       218 h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~  291 (479)
                      ....+..+++.+. +.++++-...+.|+.+++...    .....+.........|++.+.+..|+ +-...+.|.+.++.
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            3456788999885 445556666688888888753    22233332334567899998776555 44566789999986


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      ........  .........++++|....|+.+....                       .+.|...++........+...
T Consensus       502 G~~~~~l~--~~~l~~P~gIaVDp~~g~LYwtD~g~-----------------------~~~I~~~~~dG~~~~~lv~~~  556 (791)
T 3m0c_C          502 GVKRKTLF--RENGSKPRAIVVDPVHGFMYWTDWGT-----------------------PAKIKKGGLNGVDIYSLVTEN  556 (791)
T ss_dssp             SSSEEEEE--ECTTCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCCEEEEECSS
T ss_pred             CCeEEEEE--eCCCCCcceEEEecCCCCEEEecCCC-----------------------CCeEEEEecCCCceEEEEeCC
Confidence            43321111  01223466788887655554432110                       123444444322222222222


Q ss_pred             CCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecC--CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895         372 KKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPG--HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       372 ~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~--h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      -...+.|++++. +.++.+-... .|...+.....+...+..  .-.....|++..+.++++-...+.|...|..+|..+
T Consensus       557 l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~  636 (791)
T 3m0c_C          557 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV  636 (791)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCC
T ss_pred             CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcce
Confidence            245688999975 4455554433 488888754433333322  122345667665556666667788888888888766


Q ss_pred             EEE
Q psy8895         448 QRL  450 (479)
Q Consensus       448 ~~~  450 (479)
                      ..+
T Consensus       637 ~~l  639 (791)
T 3m0c_C          637 NLL  639 (791)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            555

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.68  E-value=0.035  Score=57.05  Aligned_cols=210  Identities=9%  Similarity=0.051  Sum_probs=110.4

Q ss_pred             cEEEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEE-CC-----CcEEEEECCC
Q psy8895         221 WVRCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCG-DD-----RTVKCWDLEY  292 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~-~d-----~~i~~wd~~~  292 (479)
                      ...++++..+|+.++.|+. +..+.+||..+++....-..+... -.++++.+++++++.|| .+     ..+.+||+++
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            3345677789999999984 468999999887554322222221 23456667888888888 44     5799999876


Q ss_pred             CCcccCC----CCCCCCCCeEEEEEeCCCCEEEEEeC---------CCeEEEEeCCCCC---------------------
Q psy8895         293 NKAPVQP----GSMDSESGIFSMTFDNSGSRLITTEA---------DKTVKLYKEDDSA---------------------  338 (479)
Q Consensus       293 ~~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~~~~~~~~---------------------  338 (479)
                      .......    ........-  ..+..++...+.++.         ...+..|+.....                     
T Consensus       324 ~~W~~~~~~~~~p~~~~~~~--~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~  401 (656)
T 1k3i_A          324 KTWTSLPNAKVNPMLTADKQ--GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG  401 (656)
T ss_dssp             TEEEEETTSCSGGGCCCCTT--GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC
T ss_pred             CcceeCCCcccccccccccc--ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCC
Confidence            5422110    000000000  000111222222222         2345556543221                     


Q ss_pred             ------CCCCCeEEEEeCCC-----------cEEEEECCCCeeEEEE--ccCCCc-eEEEEEeCCCcEEEEEcC------
Q psy8895         339 ------TEESHPVITGSHDC-----------TIRLWDLAAGKSLCTL--TNHKKS-VRSVALHPTLYMFASASP------  392 (479)
Q Consensus       339 ------~~~~~~l~sgs~d~-----------~v~iwd~~~~~~~~~~--~~h~~~-v~~i~~~~~~~~l~s~s~------  392 (479)
                            ......++.|+.++           .+.+||..+.+-....  ..+... -.++...|++++++.++.      
T Consensus       402 ~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~  481 (656)
T 1k3i_A          402 NAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPF  481 (656)
T ss_dssp             EEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTT
T ss_pred             ceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCc
Confidence                  01234566666432           5777887765433222  112222 234566788888888763      


Q ss_pred             ------CcEEEEeCCCCeEEe--eecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         393 ------DNIKQWKCPEGKFIQ--NLPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       393 ------d~i~~w~~~~~~~~~--~~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                            ..+.+||..+.+-..  .+...+....+..+.+++ +++.|+.
T Consensus       482 ~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          482 EDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                  237889987655322  222222222334456777 7777774

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.55  E-value=0.57  Score=45.15  Aligned_cols=216  Identities=10%  Similarity=0.092  Sum_probs=115.5

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC----cEEEEECCCCCc
Q psy8895         222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR----TVKCWDLEYNKA  295 (479)
Q Consensus       222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~----~i~~wd~~~~~~  295 (479)
                      -..++++| ++..|+.+...+.|+.+|+.++....... .......+++++++.+|+.+.. ++    .+...+... ..
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g-~~  216 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES-GF  216 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG-TS
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC-ce
Confidence            35788987 35556555555889999998776544333 3445789999999996655543 22    233344321 11


Q ss_pred             ccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCC------------------CCCC-eEEEEeCCCcEE
Q psy8895         296 PVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSAT------------------EESH-PVITGSHDCTIR  355 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~-~l~sgs~d~~v~  355 (479)
                      .... ..........++++| ++..+++-...+.|..++.+....                  ++.. +.++-...+.|.
T Consensus       217 ~~~~-~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVIT-ELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEE-EEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeee-eeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            1000 000112234577888 666666666777888887653211                  1223 333444566777


Q ss_pred             EEECCC--Cee--EEEEccC---C------------CceE-EEEEe--------CCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895         356 LWDLAA--GKS--LCTLTNH---K------------KSVR-SVALH--------PTLYMFASASPD-NIKQWKCPEGKFI  406 (479)
Q Consensus       356 iwd~~~--~~~--~~~~~~h---~------------~~v~-~i~~~--------~~~~~l~s~s~d-~i~~w~~~~~~~~  406 (479)
                      .++...  ++.  ..++.+.   .            ..-. .+++.        +++.++++-..+ .|+.++ .+|+..
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~v~  374 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGRVT  374 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSEEE
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCcEE
Confidence            766542  111  1122111   0            0112 45553        346666666544 488887 456543


Q ss_pred             eeec-------C--C--------cceEEEEEEcC-CC-EEEEEeCCCcEEEEec
Q psy8895         407 QNLP-------G--H--------NAIINSICVNN-EG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       407 ~~~~-------~--h--------~~~v~~l~~~~-~~-~l~sg~~dg~i~lWd~  441 (479)
                      ....       +  .        -.....+++++ ++ ++++-....+|+..+.
T Consensus       375 ~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          375 TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            2211       1  0        11467888888 56 4555555677777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.52  E-value=0.48  Score=43.45  Aligned_cols=198  Identities=11%  Similarity=0.174  Sum_probs=113.6

Q ss_pred             EEEEEcCCCcEEEEEe-CCCeEEEEECCCCceEEE-Eec----CCc--CEEEEEE---cCCCCEEEEEE-----------
Q psy8895         223 RCVAVEPGNEWFATGS-ADKIIKVWDLATGKLKLS-LTG----HVG--SVRGLTV---SPRHPYLFSCG-----------  280 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs-~d~~i~iWd~~~~~~~~~-~~~----h~~--~v~~v~~---~~~~~~l~s~~-----------  280 (479)
                      .+.+|.+....|..++ ..++|..||...+..... +.+    ...  .+..+.+   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4678877555555555 789999999986644332 222    111  3578999   68877776543           


Q ss_pred             --CCCcEEEEECC---CCCcccCCCC--C--C-------CCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCC
Q psy8895         281 --DDRTVKCWDLE---YNKAPVQPGS--M--D-------SESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESH  343 (479)
Q Consensus       281 --~d~~i~~wd~~---~~~~~~~~~~--~--~-------~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~  343 (479)
                        .+..+..+|+.   +++.......  .  +       .......++.+++|+..++++.. +.|...+.         
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p---------  166 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA---------  166 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT---------
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC---------
Confidence              26789999988   5544321100  0  0       11347789999999988887766 66544443         


Q ss_pred             eEEEEeCCCc-EEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE--Eeeec--CC---cc
Q psy8895         344 PVITGSHDCT-IRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF--IQNLP--GH---NA  414 (479)
Q Consensus       344 ~l~sgs~d~~-v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~--~~~~~--~h---~~  414 (479)
                             ||+ +..|.+....     .......+-|+++|++.+|+....+ .+..+|+.+...  +. +.  |.   -.
T Consensus       167 -------dG~~~~~~~~~~~~-----~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~  233 (334)
T 2p9w_A          167 -------DGKTVSTFAWESGN-----GGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEP-VKINGDFGTLS  233 (334)
T ss_dssp             -------TSCCEEEEEECCCC-----SSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEE-CEESSCCCCCT
T ss_pred             -------CCCEEeeeeecCCC-----cccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeec-ccccCCccccc
Confidence                   332 4556543311     1112345789999999777666444 488888764322  11 11  21   11


Q ss_pred             eEEE-EEEcCCC-E-EEEEeCCCcEEEEecC
Q psy8895         415 IINS-ICVNNEG-V-LVSGADNGTMCFWDWR  442 (479)
Q Consensus       415 ~v~~-l~~~~~~-~-l~sg~~dg~i~lWd~~  442 (479)
                      .... +....++ . |++.+..+.+.+.+..
T Consensus       234 ~~dgilp~~~~G~vllV~~~~~~~~~l~S~D  264 (334)
T 2p9w_A          234 GTEKIVTVPVGNESVLVGARAPYAISFRSWD  264 (334)
T ss_dssp             TEEEEEEEEETTEEEEEEEETTEEEEEECSS
T ss_pred             CcccccccccCCEEEEEEcCCCCEEEEECCC
Confidence            1233 2333344 3 6666666666666543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.46  E-value=0.57  Score=43.68  Aligned_cols=194  Identities=13%  Similarity=0.042  Sum_probs=103.3

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCC
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      ..|.+..+++.++++ . ...|+..++........+... .....++|++....|+-. ...+.|..+++..........
T Consensus        36 ~~C~~~~~~~~ll~~-~-~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           36 RSCKALGPEPVLLFA-N-RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SCEEESSSCCEEEEE-C-BSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CcccccccCceeEee-c-ccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            346555554433333 2 345777788766554444433 357899999765555544 466789999886543211100


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                        ........+++++.+..+..+.                        ...+.|.+.++........+...-...+.+++
T Consensus       113 --~~~~~p~glavd~~~g~ly~~d------------------------~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav  166 (349)
T 3v64_C          113 --TGLESPGGLAVDWVHDKLYWTD------------------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  166 (349)
T ss_dssp             --SSCSCCCEEEEETTTTEEEEEE------------------------TTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred             --CCCCCccEEEEecCCCeEEEEc------------------------CCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence              0112234566665444433222                        12234444444432221122222345688999


Q ss_pred             eCC-CcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEEEcCC-CE-EEEEeCCCcEEEEecCCC
Q psy8895         381 HPT-LYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSICVNNE-GV-LVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       381 ~~~-~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~~-l~sg~~dg~i~lWd~~~~  444 (479)
                      +|. +.++.+....  .|...+.............-...+.++++++ +. .++-+..++|..+|+...
T Consensus       167 dp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          167 HPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             ETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             ecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            984 5666665543  4777776433222222223345788999964 44 455556678988887643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.23  E-value=0.84  Score=43.21  Aligned_cols=192  Identities=14%  Similarity=0.053  Sum_probs=100.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~  301 (479)
                      .|.+..+++ +|+.+. ...|+..++..+......... .....++|++....|+ +-...+.|..+++.......... 
T Consensus        80 ~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~~~~~~-~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-  155 (386)
T 3v65_B           80 SCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-  155 (386)
T ss_dssp             CEEECSSCC-EEEEEC-BSCEEEECTTSCCCEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-
T ss_pred             eECCccccc-eeEeec-CccceeeccCCCcEEEEecCC-CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-
Confidence            355555533 443333 356888888776654444433 4578999997655555 44466789999886543211100 


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH  381 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~  381 (479)
                       ........+++++.+..+..+.                        ...+.|.+.++........+...-...+.++++
T Consensus       156 -~~~~~p~glavd~~~g~lY~~d------------------------~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          156 -TGLESPGGLAVDWVHDKLYWTD------------------------SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             -SSCSCCCCEEEETTTTEEEEEE------------------------TTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred             -CCCCCccEEEEEeCCCeEEEEc------------------------CCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence             0111223455665444333222                        122334444443222111222222456889999


Q ss_pred             CC-CcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEEEcCC-C-EEEEEeCCCcEEEEecCC
Q psy8895         382 PT-LYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSICVNNE-G-VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       382 ~~-~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~-~l~sg~~dg~i~lWd~~~  443 (479)
                      |. +.++.+....  .|...+.............-...+.|+++++ + ++++-+..+.|..+|+..
T Consensus       211 p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred             cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence            85 5555555443  4666666433222222223345678899854 4 445555667888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.13  E-value=0.42  Score=42.26  Aligned_cols=179  Identities=9%  Similarity=0.064  Sum_probs=99.8

Q ss_pred             EEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         256 SLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       256 ~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                      .+.+-...+..++++|++..|++ ...++.|...|.. ++..... ..........+++.+++.++++.-.++.+.+++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            44555667999999998766655 5667788888886 4332211 1122234666777777766565555556655553


Q ss_pred             CCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCCc--EEEEeC-CCCeEEeee-
Q psy8895         335 DDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPDN--IKQWKC-PEGKFIQNL-  409 (479)
Q Consensus       335 ~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d~--i~~w~~-~~~~~~~~~-  409 (479)
                      ..              ++.+.+-+...- .+.. .........++++|.+. ++++...+.  +..|+- .....+..+ 
T Consensus        99 ~~--------------~~~i~~~~~~~~-~~~~-~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~  162 (255)
T 3qqz_A           99 TP--------------NSEVKILKKIKI-PLQE-SPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISK  162 (255)
T ss_dssp             CT--------------TCCEEEEEEEEC-CCSS-CCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEE
T ss_pred             CC--------------CCeeeeeeeecc-cccc-ccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeec
Confidence            32              222111000000 0000 11344578999999875 444444443  444541 111111111 


Q ss_pred             ------cCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         410 ------PGHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       410 ------~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                            ..+...+.++++.|..  +++....+..+..+|.+ |..+..+.+.
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~  213 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLT  213 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECS
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcC
Confidence                  1123356888998765  66777788889999965 6677777766

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.98  E-value=1.4  Score=44.73  Aligned_cols=206  Identities=9%  Similarity=-0.003  Sum_probs=108.1

Q ss_pred             CccEEEEEEcCCCcEEE-EEeCCCeEEEEECCCCce-EEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc
Q psy8895         219 LGWVRCVAVEPGNEWFA-TGSADKIIKVWDLATGKL-KLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~-sgs~d~~i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~  295 (479)
                      .+....++|++.++.|+ +-...+.|..+++..... ...+..-......+++++.+..|+ +-...+.|.+.++.....
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~  118 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR  118 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence            34567899998665554 444567888888875532 223333234678999998665555 445678999999865432


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCce
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSV  375 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v  375 (479)
                      .....  ........++++|.+..+..+....                       .+.|...++............-...
T Consensus       119 ~~l~~--~~l~~P~~Iavdp~~g~ly~tD~g~-----------------------~~~I~r~~~dG~~~~~l~~~~~~~P  173 (619)
T 3s94_A          119 KVLFW--QELDQPRAIALDPSSGFMYWTDWGE-----------------------VPKIERAGMDGSSRFIIINSEIYWP  173 (619)
T ss_dssp             EEEEC--SSCSCCCCEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSCEEEECSSCSSE
T ss_pred             EEEEe--CCCCCCceEEEecCCCeEEEeccCC-----------------------CCEEEEEECCCCceEEEEeCCCCCC
Confidence            11110  1122345677777655554433210                       1122222222111111111122346


Q ss_pred             EEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         376 RSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       376 ~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      +.|+++++ +.++.+-... .|...+...........+.......+++..+..+.+-...+.|...|..+|...+.
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~  249 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE  249 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEE
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEE
Confidence            78999986 4454444433 48888875443322222111222456666665566666778899999888765433

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.97  E-value=0.81  Score=44.13  Aligned_cols=194  Identities=14%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             EEEEEEcCC---CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC---Cc-EEEEECCCCC
Q psy8895         222 VRCVAVEPG---NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD---RT-VKCWDLEYNK  294 (479)
Q Consensus       222 v~~~~~~~~---g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d---~~-i~~wd~~~~~  294 (479)
                      -..++++|+   +.++++ ...+.|+.+|+.++..... .........+++++++.++++....   .. +...+.....
T Consensus       141 P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            357889984   554444 3338899999988766543 3344467899999999954443211   11 2222221100


Q ss_pred             cccCCCCCCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE-c-cC
Q psy8895         295 APVQPGSMDSESGIFSMTFDN-SGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-T-NH  371 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~-~-~h  371 (479)
                      ....  ..........+++++ ++...++-                         ..++.|+.+|..++.....+ . +.
T Consensus       219 ~~~~--~~~~~~~P~giavd~~~G~lyv~d-------------------------~~~~~V~~~d~~~g~~~~~~~~~~~  271 (433)
T 4hw6_A          219 TERL--SLCNARGAKTCAVHPQNGKIYYTR-------------------------YHHAMISSYDPATGTLTEEEVMMDT  271 (433)
T ss_dssp             CCEE--EEEECSSBCCCEECTTTCCEEECB-------------------------TTCSEEEEECTTTCCEEEEEEECSC
T ss_pred             eccc--cccccCCCCEEEEeCCCCeEEEEE-------------------------CCCCEEEEEECCCCeEEEEEeccCC
Confidence            0000  000001122244444 23222222                         23445666665544431221 1 11


Q ss_pred             CCceEEEEEeCCCc-EEEEEcCC-cEEEEeCC--CCeEE--eeecC------C---------cceEEEEEE---------
Q psy8895         372 KKSVRSVALHPTLY-MFASASPD-NIKQWKCP--EGKFI--QNLPG------H---------NAIINSICV---------  421 (479)
Q Consensus       372 ~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~--~~~~~--~~~~~------h---------~~~v~~l~~---------  421 (479)
                      ...-..++++|++. ++++-... .|..++..  ++...  ..+.+      .         -.....+++         
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d  351 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE  351 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred             CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence            12224699999987 55555544 48777654  33221  11111      1         113567888         


Q ss_pred             cCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         422 NNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       422 ~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      .+++ ++++-....+|+.++. +|.
T Consensus       352 d~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          352 EDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             SCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             CCCCcEEEEECCCCEEEEECC-CCC
Confidence            6777 5556566788999984 564

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.93  E-value=1.3  Score=42.68  Aligned_cols=214  Identities=12%  Similarity=0.148  Sum_probs=109.4

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCC---Ce-EEEEECCCCce-EEEEecCCcCEEEEEEcC-CCCEEEEEECCCcEEEEEC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSAD---KI-IKVWDLATGKL-KLSLTGHVGSVRGLTVSP-RHPYLFSCGDDRTVKCWDL  290 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d---~~-i~iWd~~~~~~-~~~~~~h~~~v~~v~~~~-~~~~l~s~~~d~~i~~wd~  290 (479)
                      +......+++++++|+++++-...   .. +...+...+.. ...+. .-.....++++| ++.+.++-..++.|+.+|.
T Consensus       179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~  257 (433)
T 4hw6_A          179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDP  257 (433)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECT
T ss_pred             cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEEC
Confidence            344557899999999955554321   12 22222222211 11122 122346688999 6766656556778999988


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCCCC-CCeEEEEeC--CCcEEEEECCCCeeEE
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSATEE-SHPVITGSH--DCTIRLWDLAAGKSLC  366 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~-~~~l~sgs~--d~~v~iwd~~~~~~~~  366 (479)
                      .++.................++++|+++.+..+ ...+.|..++.+...... ....+.|..  .+..      .+..  
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~------dg~~--  329 (433)
T 4hw6_A          258 ATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWV------DGMG--  329 (433)
T ss_dssp             TTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCB------CEEG--
T ss_pred             CCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccC------CCcc--
Confidence            644331111011111223468999999855544 455677777654321111 112233321  1100      0000  


Q ss_pred             EEccCCCceEEEEE---------eCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCC------------------cceEEE
Q psy8895         367 TLTNHKKSVRSVAL---------HPTLYMFASASPD-NIKQWKCPEGKFIQNLPGH------------------NAIINS  418 (479)
Q Consensus       367 ~~~~h~~~v~~i~~---------~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h------------------~~~v~~  418 (479)
                       ....-..-..+++         .+++.++++-..+ .|+.++. +|... ++.+.                  -.....
T Consensus       330 -~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~g  406 (433)
T 4hw6_A          330 -TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTS  406 (433)
T ss_dssp             -GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEE
T ss_pred             -cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcE
Confidence             0001123467888         6778887777665 4888874 56443 22221                  113667


Q ss_pred             EEEc-CCC-EEEEEeCCCcEEEEecC
Q psy8895         419 ICVN-NEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       419 l~~~-~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      ++++ +++ ++++=....+|+..+++
T Consensus       407 iavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          407 IAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             EEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EEEECCCCEEEEEeCCCCEEEEEecC
Confidence            8888 667 44544556677776643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.50  E-value=0.029  Score=58.03  Aligned_cols=205  Identities=15%  Similarity=0.050  Sum_probs=104.3

Q ss_pred             ccEEEEEEcCCCcEEEE-EeCCCeEEEEECCC----CceEEEEecCCcCEEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q psy8895         220 GWVRCVAVEPGNEWFAT-GSADKIIKVWDLAT----GKLKLSLTGHVGSVRGLTVSPRHP-YLFSCGDDRTVKCWDLEYN  293 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~s-gs~d~~i~iWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~~wd~~~~  293 (479)
                      ..+..++|++.+..|+. -...+.|..+++..    ......+.........+++.+.+. ++++-...+.|.+.++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            34567888886655544 44567888888875    121111111112345677775444 4444445678888887643


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc-cCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHK  372 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~-~h~  372 (479)
                      .......  ........++++|.+..|+.+...                       ..+.|...++... ....+. ..-
T Consensus       486 ~~~~l~~--~~~~~P~giavDp~~g~ly~td~~-----------------------~~~~I~~~~~dG~-~~~~l~~~~l  539 (699)
T 1n7d_A          486 KRKTLFR--EQGSKPRAIVVDPVHGFMYWTDWG-----------------------TPAKIKKGGLNGV-DIYSLVTENI  539 (699)
T ss_dssp             CEEEECC--CSSCCCCCEECCSSSSCCEECCCS-----------------------SSCCEEBCCSSSC-CCCEESCSSC
T ss_pred             ceEEEEe--CCCCCcceEEEccCCCcEEEcccC-----------------------CCCeEEEEeCCCC-CeeEEEeCCC
Confidence            3211110  011123345566644433322110                       0133444443321 111111 112


Q ss_pred             CceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeec--CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEE
Q psy8895         373 KSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLP--GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       373 ~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      ...+.|+++|+ +.++.+-+.. .|..++.........+.  ........|++..+.++++-...++|..+|..+|..++
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~  619 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVN  619 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEE
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceE
Confidence            23467899986 4565555544 48888875433222221  11122334556666666777778899999988887765


Q ss_pred             EE
Q psy8895         449 RL  450 (479)
Q Consensus       449 ~~  450 (479)
                      .+
T Consensus       620 ~i  621 (699)
T 1n7d_A          620 LL  621 (699)
T ss_dssp             CC
T ss_pred             Ee
Confidence            55

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.15  E-value=1.5  Score=39.60  Aligned_cols=210  Identities=8%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             CCcEEEEEe-CC-----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC-----CcEEEEECCCCC---
Q psy8895         230 GNEWFATGS-AD-----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNK---  294 (479)
Q Consensus       230 ~g~~l~sgs-~d-----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~---  294 (479)
                      ++..++.|+ .+     ..+.++|+.+++....-....... .+++. .++..++.||.+     ..+.+||+.+..   
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence            345555555 22     368889988775432111111111 12222 245666677654     468899987665   


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC---------C--------CCCCeEEEEeCC-
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA---------T--------EESHPVITGSHD-  351 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~---------~--------~~~~~l~sgs~d-  351 (479)
                      .............-..+..  ++..++.|+.+     ..+..||.....         .        .....++.|+.+ 
T Consensus        93 W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  170 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDG  170 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCS
T ss_pred             eEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCC
Confidence            2211111111111122222  34555555433     346667754321         0        012334555543 


Q ss_pred             ----CcEEEEECCCCeeE--EEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEE--eeecCCcceEE
Q psy8895         352 ----CTIRLWDLAAGKSL--CTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFI--QNLPGHNAIIN  417 (479)
Q Consensus       352 ----~~v~iwd~~~~~~~--~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~--~~~~~h~~~v~  417 (479)
                          ..+..||..+.+=.  ..+........++. . ++.+++.++.      +.+.+||..+.+-.  ..++.......
T Consensus       171 ~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~  248 (301)
T 2vpj_A          171 LNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-L-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVG  248 (301)
T ss_dssp             SCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCcEEeCCCCCcccccceEEE-E-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccccee
Confidence                45788888765322  11211112222222 2 4555555543      34788998776532  22222222122


Q ss_pred             EEEEcCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895         418 SICVNNEGVLVSGADN-----GTMCFWDWRTGY  445 (479)
Q Consensus       418 ~l~~~~~~~l~sg~~d-----g~i~lWd~~~~~  445 (479)
                      + +...+..++.|+.+     ..+.+||.++++
T Consensus       249 ~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          249 A-TVLRGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             E-EEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             E-EEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            2 22344466667655     457889988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.13  E-value=3.2  Score=42.04  Aligned_cols=204  Identities=9%  Similarity=-0.013  Sum_probs=116.0

Q ss_pred             ccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  297 (479)
                      .....++|++.+.. +++-..++.|..+++........+..-......+++++.+..|+ +-...+.|.+.++.......
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~  116 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV  116 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence            45678999986555 45555678899998876544333332223567889987666554 44456788898886433211


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ..  .........++++|....+..+....                       .+.|...++..... ..+...-.....
T Consensus       117 l~--~~~l~~P~~iavdp~~G~lY~tD~g~-----------------------~~~I~r~~~dG~~~-~~l~~~~~~P~G  170 (628)
T 4a0p_A          117 LV--WKDLDSPRALALDPAEGFMYWTEWGG-----------------------KPKIDRAAMDGSER-TTLVPNVGRANG  170 (628)
T ss_dssp             EE--CSSCCCEEEEEEETTTTEEEEEECSS-----------------------SCEEEEEETTSCSC-EEEECSCSSEEE
T ss_pred             EE--eCCCCCcccEEEccCCCeEEEeCCCC-----------------------CCEEEEEeCCCCce-EEEECCCCCcce
Confidence            11  01223467788887655554433110                       12233333332211 111112334678


Q ss_pred             EEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         378 VALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       378 i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      |+++++. .++.+-... .|...+...... ..+.........+++..+..+++-...+.|...|..+|.....+
T Consensus       171 lalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l  244 (628)
T 4a0p_A          171 LTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTII  244 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEE
Confidence            9999864 444444433 488888754433 22322223345677776556666667889999998888655444

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.89  E-value=0.97  Score=43.50  Aligned_cols=152  Identities=11%  Similarity=0.144  Sum_probs=88.0

Q ss_pred             CEEEEEEcC-CCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCC
Q psy8895         263 SVRGLTVSP-RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDD  336 (479)
Q Consensus       263 ~v~~v~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~  336 (479)
                      ....++++| +...|+.+...+.|+.+|++........   ........++++++++.+.++...+     .+.+++.  
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~---~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~--  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY---SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR--  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE---CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG--
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe---cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC--
Confidence            346788997 3455665555588899998764432211   1334577899999998666554321     1111111  


Q ss_pred             CCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCCeEEeee-cCCc
Q psy8895         337 SATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEGKFIQNL-PGHN  413 (479)
Q Consensus       337 ~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~~~~~~~-~~h~  413 (479)
                                    ++...     ....+..+    .....++++| ++.++++-..+ .|..++...+...... .+..
T Consensus       213 --------------~g~~~-----~~~~l~~~----~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~  269 (430)
T 3tc9_A          213 --------------ESGFK-----VITELTKG----QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS  269 (430)
T ss_dssp             --------------GGTSC-----SEEEEEEC----SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred             --------------CCcee-----eeeeeccC----CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence                          11100     00111121    2346788999 78877776544 5899998776642211 1122


Q ss_pred             ceEEEEEEcCCC-E-EEEEeCCCcEEEEecC
Q psy8895         414 AIINSICVNNEG-V-LVSGADNGTMCFWDWR  442 (479)
Q Consensus       414 ~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~  442 (479)
                      .....++++|++ + +++-...++|..++..
T Consensus       270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            345688999988 3 4555567889998765

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.80  E-value=3.3  Score=40.43  Aligned_cols=62  Identities=18%  Similarity=0.220  Sum_probs=42.3

Q ss_pred             cEEEEEEcCC--CcEEEEEeCCCeEEEEECCCCceEEEEecC---CcCEEEEEE-------cCCCCEEEEEECC
Q psy8895         221 WVRCVAVEPG--NEWFATGSADKIIKVWDLATGKLKLSLTGH---VGSVRGLTV-------SPRHPYLFSCGDD  282 (479)
Q Consensus       221 ~v~~~~~~~~--g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h---~~~v~~v~~-------~~~~~~l~s~~~d  282 (479)
                      .-..|+|+|+  ++++++-...+.|++.|+.++........-   ......++|       ++++.+|+.+...
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence            4567899983  455555555577999999887765544322   235789999       9999866666544

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.76  E-value=2.4  Score=38.75  Aligned_cols=110  Identities=12%  Similarity=0.103  Sum_probs=64.2

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcccC
Q psy8895         222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~  298 (479)
                      ...+++.+ ++.++++-...+.|.+.++........+.........++++|.+..++...  ..+.|...++........
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  160 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII  160 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence            45678886 455666666778999999875543333333445678999998755555444  357788888754322111


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEe
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYK  333 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~  333 (479)
                      .  ...-.....+++++++..+..+. ..+.|..++
T Consensus       161 ~--~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          161 I--NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             E--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             E--ECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence            0  01123456788888666555443 333444444

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.15  E-value=3.1  Score=37.42  Aligned_cols=208  Identities=12%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             cEEEEEeCC----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC-----CcEEEEECCCCCcccCCCC
Q psy8895         232 EWFATGSAD----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       232 ~~l~sgs~d----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~  301 (479)
                      ..++.|+.+    ..+..+|+.+.+....-....... .+++.. ++..++.||.+     ..+.+||+.+.+.......
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~   95 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANM   95 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCC
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCC
Confidence            444555532    357888988775432211111110 122222 55566677644     3588889876543211111


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCC-----eEEEEeCCCCC-------C----------CCCCeEEEEeC-------CC
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADK-----TVKLYKEDDSA-------T----------EESHPVITGSH-------DC  352 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~~~~~~~~-------~----------~~~~~l~sgs~-------d~  352 (479)
                      ......-..+.+  ++..++.|+.++     .+..||.....       .          .....++.|+.       -.
T Consensus        96 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  173 (302)
T 2xn4_A           96 RDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLS  173 (302)
T ss_dssp             SSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEECC
T ss_pred             CccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCcccc
Confidence            111111122222  445555565443     35566654321       0          01223444443       23


Q ss_pred             cEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEE--eeecCCcceEEEEEEc
Q psy8895         353 TIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFI--QNLPGHNAIINSICVN  422 (479)
Q Consensus       353 ~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~--~~~~~h~~~v~~l~~~  422 (479)
                      .+..||..+.+=  +..+....... ++... ++.+++.++.      +.+.++|..+.+-.  ..++...... +++..
T Consensus       174 ~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~  250 (302)
T 2xn4_A          174 TVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV  250 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE
T ss_pred             EEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE
Confidence            577888876532  22222222222 22222 4555555542      24788888766432  2222211111 12233


Q ss_pred             CCCEEEEEeCCC-----cEEEEecCCCe
Q psy8895         423 NEGVLVSGADNG-----TMCFWDWRTGY  445 (479)
Q Consensus       423 ~~~~l~sg~~dg-----~i~lWd~~~~~  445 (479)
                      .+.+++.|+.++     .+.+||.++++
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence            444666676553     48899988863

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.00  E-value=6.8  Score=40.83  Aligned_cols=178  Identities=13%  Similarity=0.075  Sum_probs=94.9

Q ss_pred             CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCc----ccCCCCCCCCCCeEEEEEe
Q psy8895         240 DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKA----PVQPGSMDSESGIFSMTFD  314 (479)
Q Consensus       240 d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~i~~~~~~  314 (479)
                      ...|+..++........+. ....+..+++++....|+ +-...+.|+.+++.....    ....  .........++++
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi--~~~l~~P~GLAvD  479 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SRDIQAPDGLAVD  479 (791)
T ss_dssp             BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CSSCSCCCEEEEE
T ss_pred             ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEE--ecCCCCcceeeee
Confidence            3567778887665544444 345678899998555554 445567888888864211    0000  0011223456666


Q ss_pred             CCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCC-CcEEEEEcC-
Q psy8895         315 NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT-LYMFASASP-  392 (479)
Q Consensus       315 ~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~-~~~l~s~s~-  392 (479)
                      +.+..|..+.                        ...+.|.+.++........+...-...+.|+++|. +.++.+-.. 
T Consensus       480 ~~~~~LY~tD------------------------~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          480 WIHSNIYWTD------------------------SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             TTTTEEEEEE------------------------TTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             ecCCcEEEEe------------------------cCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence            5554433222                        22345555555533222222223345788999986 566666533 


Q ss_pred             -CcEEEEeCCCCeEEeeecCCcceEEEEEEcCC-CEE-EEEeCCCcEEEEecCCC
Q psy8895         393 -DNIKQWKCPEGKFIQNLPGHNAIINSICVNNE-GVL-VSGADNGTMCFWDWRTG  444 (479)
Q Consensus       393 -d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~-~~l-~sg~~dg~i~lWd~~~~  444 (479)
                       ..|...+.........+...-...+.|++++. +.| ++=....+|...++...
T Consensus       536 ~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          536 PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence             34777776543333333333356788888854 444 44445567888887643

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=93.67  E-value=3.8  Score=36.85  Aligned_cols=207  Identities=10%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             cEEEEEeC--CCeEEEEECCCCceEEE--EecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEECCCCCcccCCCCCC
Q psy8895         232 EWFATGSA--DKIIKVWDLATGKLKLS--LTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLEYNKAPVQPGSMD  303 (479)
Q Consensus       232 ~~l~sgs~--d~~i~iWd~~~~~~~~~--~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~  303 (479)
                      .+++.|+.  ...+.+||..+++....  +......-..+.  .++..++.||.+    ..+.+||+.+...........
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555554  35788899888754322  111111111222  255566777754    678888987654321111011


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCC------CeEEEEeCCCCC------C-----------CCCCeEEEEeC---------C
Q psy8895         304 SESGIFSMTFDNSGSRLITTEAD------KTVKLYKEDDSA------T-----------EESHPVITGSH---------D  351 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~~~------~-----------~~~~~l~sgs~---------d  351 (479)
                      ....-..+.+  ++..++.|+.+      ..+..||.....      .           .....++.|+.         -
T Consensus        91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred             cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence            1111122222  44555555543      346677755421      0           01223344432         3


Q ss_pred             CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeE--EeeecCCcceEEEEEE
Q psy8895         352 CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKF--IQNLPGHNAIINSICV  421 (479)
Q Consensus       352 ~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~--~~~~~~h~~~v~~l~~  421 (479)
                      ..+.+||..+.+=  +..+......- ++... ++.+++.++.      +.+.++|..+.+=  +..++.......++. 
T Consensus       169 ~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  245 (306)
T 3ii7_A          169 NSCEVYDPATETWTELCPMIEARKNH-GLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-  245 (306)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-
T ss_pred             ceEEEeCCCCCeEEECCCccchhhcc-eEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-
Confidence            4578888877632  21121111222 22223 4555555442      2478888877642  222222222222222 


Q ss_pred             cCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895         422 NNEGVLVSGADN-----GTMCFWDWRTGY  445 (479)
Q Consensus       422 ~~~~~l~sg~~d-----g~i~lWd~~~~~  445 (479)
                      ..+.+++.|+.+     ..+.+||.++++
T Consensus       246 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          246 VGSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             ETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             ECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            244467777744     568899998874

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=93.27  E-value=5.7  Score=37.61  Aligned_cols=175  Identities=15%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             CCccEEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCC
Q psy8895         218 HLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCWDLEYNK  294 (479)
Q Consensus       218 h~~~v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~~wd~~~~~  294 (479)
                      .......+++.+ .+++.++-...+.|.+.++........+.........++++|.+..|+-..  ..+.|...++....
T Consensus       157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~  236 (400)
T 3p5b_L          157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  236 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred             CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence            345567899987 556666666778999999876655444443444578999999666555443  24678888876433


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc--cC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NH  371 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h  371 (479)
                      .....  ...-.....+++++.+..|..+. ..+.|..                         .|+..........  ..
T Consensus       237 ~~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~-------------------------~d~dG~~~~~~~~~~~~  289 (400)
T 3p5b_L          237 IYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISS-------------------------IDVNGGNRKTILEDEKR  289 (400)
T ss_dssp             CEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEE-------------------------EETTSCCCEEEEECSST
T ss_pred             cEEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEE-------------------------EeCCCCccEEEEeCCCC
Confidence            21111  01123466788887766665443 2233443                         3433221111111  11


Q ss_pred             CCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         372 KKSVRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       372 ~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                      -.....+++..+ .++.+... +.|..++..+|+.+..+.........+.
T Consensus       290 l~~P~gl~v~~~-~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          290 LAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             TSSEEEEEEETT-EEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             CCCCEEEEEeCC-EEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence            123346666443 44444444 3588888777766555543333334443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=93.18  E-value=4.9  Score=36.57  Aligned_cols=176  Identities=14%  Similarity=0.054  Sum_probs=94.3

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCC---CcccCCCCCCCCCCeEEEEEeCC
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYN---KAPVQPGSMDSESGIFSMTFDNS  316 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~i~~~~~~~~  316 (479)
                      ..|+..|+.+......+.. ......++|++++..++ +-..++.|..+++...   ....... .........+++++.
T Consensus        10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-~~~~~~p~glavd~~   87 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI-SRDIQAPDGLAVDWI   87 (316)
T ss_dssp             SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE-CSSCSCCCEEEEETT
T ss_pred             CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE-eCCCCCcCEEEEeec
Confidence            4688889887765544443 34578999998665555 4445688999988641   1100000 001112345556554


Q ss_pred             CCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeC-CCcEEEEEcC--C
Q psy8895         317 GSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHP-TLYMFASASP--D  393 (479)
Q Consensus       317 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~-~~~~l~s~s~--d  393 (479)
                      +..+..+                        -..++.|.+.|+........+.......+.++++| ++.++.+...  .
T Consensus        88 ~~~ly~~------------------------d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~  143 (316)
T 1ijq_A           88 HSNIYWT------------------------DSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPA  143 (316)
T ss_dssp             TTEEEEE------------------------ETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSC
T ss_pred             CCeEEEE------------------------ECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCC
Confidence            3333222                        12233455555443222111222234568899998 4566666543  3


Q ss_pred             cEEEEeCCCCeEEeee-cCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCC
Q psy8895         394 NIKQWKCPEGKFIQNL-PGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRT  443 (479)
Q Consensus       394 ~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~  443 (479)
                      .|...+.. |+....+ ...-...+.+++++++ .| ++-+..++|..+|+..
T Consensus       144 ~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          144 KIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             EEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             eEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence            47767664 3333322 2233467889999654 44 5555667899999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=92.87  E-value=5.2  Score=36.06  Aligned_cols=166  Identities=11%  Similarity=0.005  Sum_probs=85.0

Q ss_pred             EEEEEcCCCcEEEEEeCC-C-eEEEEECCCCceEEEEec-CCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCc-cc-
Q psy8895         223 RCVAVEPGNEWFATGSAD-K-IIKVWDLATGKLKLSLTG-HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKA-PV-  297 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d-~-~i~iWd~~~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~-  297 (479)
                      ..+++.++|+++++.... + .|..+|..+++....... .......++..+++..+++-..++.|..+|....+. .. 
T Consensus        75 ~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~  154 (306)
T 2p4o_A           75 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWL  154 (306)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEE
Confidence            456677777765554432 2 355566666655322221 112234555555554444444578888888764311 10 


Q ss_pred             -----CC-CCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCC-CCC------------------CCCCeEEEEeCC
Q psy8895         298 -----QP-GSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDD-SAT------------------EESHPVITGSHD  351 (479)
Q Consensus       298 -----~~-~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~-~~~------------------~~~~~l~sgs~d  351 (479)
                           .. ...........+  ++++..+..+ ...+.|..++.+. ...                  .+....++-...
T Consensus       155 ~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~  232 (306)
T 2p4o_A          155 EHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY  232 (306)
T ss_dssp             ECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT
T ss_pred             ECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeCCC
Confidence                 00 000111223344  6677665544 5567888888753 110                  112333344446


Q ss_pred             CcEEEEECCCCeeEE--EEccCCCceEEEEEe---CCC-cEEEEEc
Q psy8895         352 CTIRLWDLAAGKSLC--TLTNHKKSVRSVALH---PTL-YMFASAS  391 (479)
Q Consensus       352 ~~v~iwd~~~~~~~~--~~~~h~~~v~~i~~~---~~~-~~l~s~s  391 (479)
                      +.|.++|.. ++...  .+...-...++++|.   |++ .++++..
T Consensus       233 ~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          233 NSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence            778888865 44422  233233467899998   775 4555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=92.51  E-value=8.4  Score=37.56  Aligned_cols=216  Identities=13%  Similarity=0.104  Sum_probs=112.7

Q ss_pred             ccEEEEEE-------cCCCcEEEEEeCCC-------eEEEEECCC-CceE-----EEEecCCcCEEEEEEcCC-CCEEEE
Q psy8895         220 GWVRCVAV-------EPGNEWFATGSADK-------IIKVWDLAT-GKLK-----LSLTGHVGSVRGLTVSPR-HPYLFS  278 (479)
Q Consensus       220 ~~v~~~~~-------~~~g~~l~sgs~d~-------~i~iWd~~~-~~~~-----~~~~~h~~~v~~v~~~~~-~~~l~s  278 (479)
                      .....++|       +++|+.|+.+...+       .|.+.+... +...     ..+.... ....++++|+ +.++++
T Consensus       186 ~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvt  264 (496)
T 3kya_A          186 NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFN  264 (496)
T ss_dssp             SBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEE
T ss_pred             CCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEE
Confidence            35788999       99999666665543       255555433 2221     1222111 3357788995 444555


Q ss_pred             EECCCcEEEEECC-------CCCc-----cc------CCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCC
Q psy8895         279 CGDDRTVKCWDLE-------YNKA-----PV------QPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSAT  339 (479)
Q Consensus       279 ~~~d~~i~~wd~~-------~~~~-----~~------~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~  339 (479)
                      -..++.|..+|+.       ++..     +.      .............++++|++..+..+ +....|+.++.+....
T Consensus       265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~  344 (496)
T 3kya_A          265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK  344 (496)
T ss_dssp             ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             ECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence            5677889999986       3332     00      00111223345789999999964444 5556777765432211


Q ss_pred             C-CCCeEEEEeC--CCcEEEEECCCCee-EEEEccCCCceE-EEEEe-------CCCcEEEEEcCC-cEEEEeCCCCeEE
Q psy8895         340 E-ESHPVITGSH--DCTIRLWDLAAGKS-LCTLTNHKKSVR-SVALH-------PTLYMFASASPD-NIKQWKCPEGKFI  406 (479)
Q Consensus       340 ~-~~~~l~sgs~--d~~v~iwd~~~~~~-~~~~~~h~~~v~-~i~~~-------~~~~~l~s~s~d-~i~~w~~~~~~~~  406 (479)
                      . .....+.|..  .|..   |   +.. ...|    ..-. -++..       +++.++++-..+ .|+.++ .+|.. 
T Consensus       345 ~~~~~~~~aG~~g~~G~~---D---G~~~~a~f----~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-  412 (496)
T 3kya_A          345 EFITPYNFVGGYKQSGYR---D---DVGTEARM----NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-  412 (496)
T ss_dssp             EECCCEEEEEBTTBCCCB---C---CBGGGCBC----SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-
T ss_pred             eecccEEecCCCCCCccc---C---Cccccccc----CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-
Confidence            0 0112333321  1100   1   100 0011    1123 34444       456666666554 477777 45533 


Q ss_pred             eeecCC------------------------cceEEEEEEcCC-C-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         407 QNLPGH------------------------NAIINSICVNNE-G-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       407 ~~~~~h------------------------~~~v~~l~~~~~-~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      .++.|.                        -.....|+++++ + ++++=....+||.++++...+..
T Consensus       413 ~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          413 STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence            233211                        123678899986 7 55555667889999988766554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=92.41  E-value=10  Score=38.30  Aligned_cols=200  Identities=9%  Similarity=0.008  Sum_probs=104.1

Q ss_pred             ccEEEEEEcCCC-cEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGN-EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g-~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~  297 (479)
                      ..+.+++|.+.+ ..+++-...+.|..+++........+.........+++.+.+..|+ +-+..+.|.+.++.......
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~  428 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI  428 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence            456788898854 4455555678888888876443333333334567889987555444 44566789998886432211


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ..  ...-.....++++|....+..+.....              ..+.....||+         ....-....-...+.
T Consensus       429 l~--~~~l~~P~~iavdp~~G~ly~tD~g~~--------------~~I~r~~~dG~---------~~~~l~~~~l~~P~G  483 (619)
T 3s94_A          429 LI--SEDLEEPRAIVLDPMVGYMYWTDWGEI--------------PKIERAALDGS---------DRVVLVNTSLGWPNG  483 (619)
T ss_dssp             EE--CTTCCSEEEEEEETTTTEEEEEECSSS--------------CEEEEEETTSC---------SCEEEECSSCSCEEE
T ss_pred             EE--ECCCCCeeeEEEEcCCCcEEEecCCCC--------------CEEEEEccCCC---------ccEEEEeCCCCCCee
Confidence            11  112345678888886444443321110              11222222322         111111112234578


Q ss_pred             EEEeCCC-cEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCC
Q psy8895         378 VALHPTL-YMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       378 i~~~~~~-~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~  444 (479)
                      |+++++. .++.+-+.. .|...+.........+.........+++..+....+-...+.|..-|..+|
T Consensus       484 lalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          484 LALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC
T ss_pred             eEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC
Confidence            8999754 444444433 477777643322211111111123445555545555556677777777777

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=92.35  E-value=15  Score=40.13  Aligned_cols=221  Identities=9%  Similarity=0.089  Sum_probs=121.7

Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEECCCC--------ceEEEEecCCcCEEEEEEcCC----CCEEEEEE---CCCcEEEE
Q psy8895         224 CVAVEPGNEWFATGSADKIIKVWDLATG--------KLKLSLTGHVGSVRGLTVSPR----HPYLFSCG---DDRTVKCW  288 (479)
Q Consensus       224 ~~~~~~~g~~l~sgs~d~~i~iWd~~~~--------~~~~~~~~h~~~v~~v~~~~~----~~~l~s~~---~d~~i~~w  288 (479)
                      |+++-. +.+++.||..|.-.+|.+...        ..+..+. .-++|.++++...    ...+++++   .+|++++.
T Consensus       331 sl~~l~-~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~-N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~l  408 (1158)
T 3ei3_A          331 CLTYLD-NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT-NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRII  408 (1158)
T ss_dssp             EEEECS-TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEEC-CCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEE
T ss_pred             EEEEEC-CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeec-CcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEE
Confidence            344433 448888998888788877643        2233343 3368888887532    23566543   56889887


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEe---CCCCEEEEEeCCCeEEEEeC-C--------CCCCCCCCeEEEEeC-C----
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFD---NSGSRLITTEADKTVKLYKE-D--------DSATEESHPVITGSH-D----  351 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~~~~d~~i~~~~~-~--------~~~~~~~~~l~sgs~-d----  351 (479)
                      .-.-..........+.-..+|.+...   ..+.+++.+..+.+. ++.. .        .....+...++.+.- +    
T Consensus       409 r~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~-Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~iv  487 (1158)
T 3ei3_A          409 RNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTR-VLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLI  487 (1158)
T ss_dssp             EESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEE-EEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEE
T ss_pred             ecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeE-EEEEeCCcccccccccccCCCCcEEEEEcCCCeEE
Confidence            53211111111112222456666543   234677777666663 3322 1        111123344555542 2    


Q ss_pred             ----CcEEEEECCCCeeEEEEccC-CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeee-cCCcceEEEEEEcCC-
Q psy8895         352 ----CTIRLWDLAAGKSLCTLTNH-KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNL-PGHNAIINSICVNNE-  424 (479)
Q Consensus       352 ----~~v~iwd~~~~~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~-~~h~~~v~~l~~~~~-  424 (479)
                          ..|++.+......+..++.. ...|...+.+.. +.+++ +.+.+.++++.++++.... ..-...|.|+++.+. 
T Consensus       488 QVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~-~vvva-~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~  565 (1158)
T 3ei3_A          488 QITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSS-QVVVA-VGRALYYLQIHPQELRQISHTEMEHEVACLDITPLG  565 (1158)
T ss_dssp             EEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSS-EEEEE-ETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCS
T ss_pred             EEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCC-EEEEE-ECCEEEEEEeeCCceeeecccCCCCceEEEEeecCC
Confidence                35667776655556555533 345777776543 34333 4455767766655432110 112346899998642 


Q ss_pred             ------CEEEEEeC-CCcEEEEecCCCeEEEE
Q psy8895         425 ------GVLVSGAD-NGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       425 ------~~l~sg~~-dg~i~lWd~~~~~~~~~  449 (479)
                            .+++.|.. |++++|+++.+-+.+..
T Consensus       566 ~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~  597 (1158)
T 3ei3_A          566 DSNGLSPLCAIGLWTDISARILKLPSFELLHK  597 (1158)
T ss_dssp             SSTTCCSEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CCcccccEEEEEECCCCEEEEEECCCCCeEEE
Confidence                  37888886 99999999987665543

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=92.34  E-value=2.4  Score=40.28  Aligned_cols=94  Identities=14%  Similarity=0.161  Sum_probs=64.9

Q ss_pred             CCcEEEEECCCCeeEEEEccC----CCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeE------------E--eeecC-
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNH----KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF------------I--QNLPG-  411 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h----~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~------------~--~~~~~-  411 (479)
                      ++.||.=++......+.++-.    ...|..+..+|++.+||..+...|.+-.++.+..            .  ..+.. 
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~  119 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE  119 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence            456666666644444444432    2367889999999999999999888877763210            1  11111 


Q ss_pred             ---CcceEEEEEEcCC----CEEEEEeCCCcEEEEecCCC
Q psy8895         412 ---HNAIINSICVNNE----GVLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       412 ---h~~~v~~l~~~~~----~~l~sg~~dg~i~lWd~~~~  444 (479)
                         .+..|..+.|.|-    +.|++-..|+.||+||+...
T Consensus       120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence               2467888888874    47888899999999999863

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.60  E-value=8.5  Score=35.68  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=57.5

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc-eEEEEe---cCCcCEEEEEEcCC---CCEEE-EEEC---C----C
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLT---GHVGSVRGLTVSPR---HPYLF-SCGD---D----R  283 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~-~~~~~~---~h~~~v~~v~~~~~---~~~l~-s~~~---d----~  283 (479)
                      -..-..++|.|+|+++++ ..++.|+++| .+++ .+..+.   .-......++++|+   +..|+ +-+.   +    +
T Consensus        28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            344578999999985555 5569999887 4454 112111   11245789999997   44444 4332   3    5


Q ss_pred             cEEEEECCCCC------c-ccCCCCCCCCCCeEEEEEeCCCCEEEEE
Q psy8895         284 TVKCWDLEYNK------A-PVQPGSMDSESGIFSMTFDNSGSRLITT  323 (479)
Q Consensus       284 ~i~~wd~~~~~------~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~  323 (479)
                      .|..|+.....      . ...............+.|.|++...++.
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            67777765331      1 1100000111123468899999766553

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=91.47  E-value=0.48  Score=48.92  Aligned_cols=161  Identities=17%  Similarity=0.076  Sum_probs=81.3

Q ss_pred             EEEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCCcccC
Q psy8895         222 VRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD--DRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       222 v~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~~wd~~~~~~~~~  298 (479)
                      ...+++.+ .++++++-...+.|.+.++........+.........++++|.+.+|+....  .+.|...++........
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            34577774 4555566566788999998765443333322234578889986554443322  26777777643222111


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc--cCCCce
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSV  375 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v  375 (479)
                      ..  ........+++++++..|..+ ...+.|..+                         |+........+.  ......
T Consensus       535 ~~--~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~-------------------------d~dG~~~~~~~~~~~~~~~P  587 (699)
T 1n7d_A          535 VT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSI-------------------------DVNGGNRKTILEDEKRLAHP  587 (699)
T ss_dssp             SC--SSCSSCCCEEECTTTCCEEEEETTTTEEEEE-------------------------CSSSSCCEEECCCSSSCSSC
T ss_pred             Ee--CCCCCccEEEEeccCCEEEEEecCCCeEEEE-------------------------ccCCCceEEEEecCCcCCCc
Confidence            00  011223457777765544333 233344444                         333211111111  111122


Q ss_pred             EEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeeec
Q psy8895         376 RSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       376 ~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~~  410 (479)
                      ..|++..+ .++.+... +.|..++..+++.+..+.
T Consensus       588 ~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          588 FSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             CCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             eEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence            34555555 44445444 358888887787766654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=91.39  E-value=8.3  Score=35.18  Aligned_cols=217  Identities=6%  Similarity=0.003  Sum_probs=107.4

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-EE-EEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-KL-SLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-~~-~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      ...+.++.|.+++..++. +.++.| +.....|+. .. ...  .....+..+.+++ +. ++.++.++.|..  ...+.
T Consensus        35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~--S~DgG  108 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH--TTDGG  108 (327)
T ss_dssp             SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE--ESSTT
T ss_pred             CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE--ECCCC
Confidence            346899999877777774 556755 333333321 11 111  1234688899986 33 344456664433  22211


Q ss_pred             cccCCCCC--CCCCCeEEEEEeCCCCEEEEEeCCCeEEE-Ee------CCCCC----------CCCCCeEEEEeCCCcEE
Q psy8895         295 APVQPGSM--DSESGIFSMTFDNSGSRLITTEADKTVKL-YK------EDDSA----------TEESHPVITGSHDCTIR  355 (479)
Q Consensus       295 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~-~~------~~~~~----------~~~~~~l~sgs~d~~v~  355 (479)
                      ........  .....+..+.+.+++..++.+ .++.+.. .|      .....          ......++.+ .++.+.
T Consensus       109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~  186 (327)
T 2xbg_A          109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFY  186 (327)
T ss_dssp             SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSEE
T ss_pred             CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcEE
Confidence            11111000  112346677776666555544 3444322 11      10000          0112223333 334333


Q ss_pred             -EEEC--CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCCeEEeeec-C---CcceEEEEEEcCCCEEE
Q psy8895         356 -LWDL--AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLP-G---HNAIINSICVNNEGVLV  428 (479)
Q Consensus       356 -iwd~--~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~~~~~~~~-~---h~~~v~~l~~~~~~~l~  428 (479)
                       -+|-  .+.+.+.  ......+..+.+.+++.+++.+..+.+.+.+.+.++....+. .   +...+..+.+.+++.++
T Consensus       187 ~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~  264 (327)
T 2xbg_A          187 STWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW  264 (327)
T ss_dssp             EEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred             EEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence             3332  2223332  234567889999999888877766666665433344333322 1   22357888888777554


Q ss_pred             EEeCCCcEEEEecCCCeE
Q psy8895         429 SGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~~~  446 (479)
                      .++.+|.+ ++....|..
T Consensus       265 ~~g~~g~i-~~S~DgG~t  281 (327)
T 2xbg_A          265 LAGGAGAL-LCSQDGGQT  281 (327)
T ss_dssp             EEESTTCE-EEESSTTSS
T ss_pred             EEeCCCeE-EEeCCCCcc
Confidence            45567777 455555543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=91.19  E-value=11  Score=36.04  Aligned_cols=202  Identities=14%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEE-cCCCCEEEEEECCCcEEEEECCCCCcccCC---C
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV-SPRHPYLFSCGDDRTVKCWDLEYNKAPVQP---G  300 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~  300 (479)
                      .-.+|..+.||--. ..++.|+|+++...++.+...++-+. =.| +++  .|+-. .+..|.-|+++....+...   .
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~Vvf-WkWis~~--~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTF-WKWISLN--TVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCE-EEEEETT--EEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceE-EEecCCC--eEEEE-cCCeeEEecccCCCCchhheecc
Confidence            34567666666554 67999999999988888776654332 233 343  33333 3567999999753333211   1


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEA---DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS  377 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~  377 (479)
                      ..-....|.....+++.+.++..+.   ++.                +     .|.+.+|..+.+ .-..+++|......
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~----------------v-----~G~mQLYS~er~-~sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNR----------------V-----VGAMQLYSVDRK-VSQPIEGHAASFAQ  203 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTE----------------E-----EEEEEEEESTTC-CEEEECCSEEEEEE
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCc----------------c-----cceEEEeecccc-ccchheeeeeeeEE
Confidence            1112456777777888887654321   111                1     356888887753 33456777555444


Q ss_pred             EEEeCC---CcEEEEEcC----CcEEEEeCCCC---e--E---Eeeec----CCcceEEEEEEcCC-CEEEEEeCCCcEE
Q psy8895         378 VALHPT---LYMFASASP----DNIKQWKCPEG---K--F---IQNLP----GHNAIINSICVNNE-GVLVSGADNGTMC  437 (479)
Q Consensus       378 i~~~~~---~~~l~s~s~----d~i~~w~~~~~---~--~---~~~~~----~h~~~v~~l~~~~~-~~l~sg~~dg~i~  437 (479)
                      +.+..+   ..+|.-+..    .++.+-++...   .  .   ...+.    .-.+.--++-+++. |.+.--..-|.|.
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~  283 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH  283 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEE
Confidence            433221   133433332    24777776432   1  1   11111    11233344555544 5666667889999


Q ss_pred             EEecCCCeEEEEEEEe
Q psy8895         438 FWDWRTGYNFQRLQVR  453 (479)
Q Consensus       438 lWd~~~~~~~~~~~~~  453 (479)
                      +||+.||.++.+-+..
T Consensus       284 lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          284 LYDLETGTCIYMNRIS  299 (494)
T ss_dssp             EEETTTCCEEEEEECC
T ss_pred             EEecccceeeeeeccc
Confidence            9999999998765433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=90.76  E-value=4.5  Score=37.00  Aligned_cols=114  Identities=11%  Similarity=0.140  Sum_probs=72.6

Q ss_pred             EEEEEE---cCCCcEEEEEe-------------CCCeEEEEECC---CCceEEEEe--cCC-----------cCEEEEEE
Q psy8895         222 VRCVAV---EPGNEWFATGS-------------ADKIIKVWDLA---TGKLKLSLT--GHV-----------GSVRGLTV  269 (479)
Q Consensus       222 v~~~~~---~~~g~~l~sgs-------------~d~~i~iWd~~---~~~~~~~~~--~h~-----------~~v~~v~~  269 (479)
                      +..+.+   .|++.+++...             .+..+..+|+.   +++......  ...           .....+++
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            367888   58887777543             26789999999   777655433  211           24789999


Q ss_pred             cCCCCEEEEEECC-CcEEEEECCCCCcc-c--CCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCC
Q psy8895         270 SPRHPYLFSCGDD-RTVKCWDLEYNKAP-V--QPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED  335 (479)
Q Consensus       270 ~~~~~~l~s~~~d-~~i~~wd~~~~~~~-~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~  335 (479)
                      .++|...++++.- +.|...+....... .  ............-+++.|++..|++....+.+.-++..
T Consensus       145 D~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          145 DRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             CTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             CCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            9999988888777 76666655432111 0  00001112235568889988888777666666666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=90.35  E-value=9.8  Score=34.20  Aligned_cols=210  Identities=11%  Similarity=0.128  Sum_probs=97.3

Q ss_pred             CCcEEEEEeC----CCeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEEC----C-----CcEEEEECCCCCc
Q psy8895         230 GNEWFATGSA----DKIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGD----D-----RTVKCWDLEYNKA  295 (479)
Q Consensus       230 ~g~~l~sgs~----d~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~----d-----~~i~~wd~~~~~~  295 (479)
                      ++..++.|+.    -..+.++|..+++....-...... -.+++.. ++..++.||.    +     ..+.+||+.+.+.
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            4555666653    236888998877543221100100 0122222 4556666665    2     4688889876543


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC--
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD--  351 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d--  351 (479)
                      ............-..+.+  ++..++.|+.+     ..+..||.....       .          .....++.|+.+  
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  180 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT  180 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCC
Confidence            221111111111222222  44555555432     346667654321       0          012334455443  


Q ss_pred             ---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCeEEe--eecCCcceEEE
Q psy8895         352 ---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGKFIQ--NLPGHNAIINS  418 (479)
Q Consensus       352 ---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~~~~--~~~~h~~~v~~  418 (479)
                         ..+..||..+.+=  +..+........++.+  ++.+++.++.      +.+.++|..+.+-..  .++....... 
T Consensus       181 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-  257 (308)
T 1zgk_A          181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALG-  257 (308)
T ss_dssp             CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-
T ss_pred             CcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceE-
Confidence               4577888876532  1112111222222332  4555555542      347888887764322  2222221112 


Q ss_pred             EEEcCCCEEEEEeCC-----CcEEEEecCCCe
Q psy8895         419 ICVNNEGVLVSGADN-----GTMCFWDWRTGY  445 (479)
Q Consensus       419 l~~~~~~~l~sg~~d-----g~i~lWd~~~~~  445 (479)
                      ++...+.+++.|+.+     ..+.+||.++++
T Consensus       258 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          258 ITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             EEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            222344466666643     457889988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=89.67  E-value=19  Score=36.42  Aligned_cols=206  Identities=11%  Similarity=0.052  Sum_probs=113.5

Q ss_pred             ccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEec------CCcCEEEEEEcCCCCEEE-EEECCCcEEEEECC
Q psy8895         220 GWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTG------HVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLE  291 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~  291 (479)
                      ..+..+.|.+.++.| .+=...+.|+.+++........+..      .......+++.+.++.|+ +-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            557889998865554 4444567888888764433223322      223678999998877655 55567788888875


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      ........  .........++++|....+.... ....-                       .|...++.......-...
T Consensus       420 G~~~~~l~--~~~l~~Pr~iavdp~~g~ly~tD~g~~~~-----------------------~I~r~~~dG~~~~~l~~~  474 (628)
T 4a0p_A          420 GRSVGVVL--KGEQDRPRAVVVNPEKGYMYFTNLQERSP-----------------------KIERAALDGTEREVLFFS  474 (628)
T ss_dssp             SCEEEEEE--ECTTCCEEEEEEETTTTEEEEEEEETTEE-----------------------EEEEEETTSCSCEEEECS
T ss_pred             CCeEEEEE--eCCCCceeeEEEecCCCeEEEeecCCCCC-----------------------eEEEEeCCCCCcEEEEec
Confidence            43211110  11224567888888544443321 11100                       222223321111111111


Q ss_pred             CCCceEEEEEeCCC-cEEEEEcC-CcEEEEeCCCCeEEeeec-CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895         371 HKKSVRSVALHPTL-YMFASASP-DNIKQWKCPEGKFIQNLP-GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       371 h~~~v~~i~~~~~~-~~l~s~s~-d~i~~w~~~~~~~~~~~~-~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      .-...+.|+++++. .++.+-+. +.|...+..... .+.+. ........+++..+..+.+=.....|...|..+|...
T Consensus       475 ~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~  553 (628)
T 4a0p_A          475 GLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGR  553 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCC
T ss_pred             cCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCc
Confidence            22345889999875 44444443 358888874333 33332 3333456777776556677677788888888888755


Q ss_pred             EEEE
Q psy8895         448 QRLQ  451 (479)
Q Consensus       448 ~~~~  451 (479)
                      ..++
T Consensus       554 ~~i~  557 (628)
T 4a0p_A          554 TKVQ  557 (628)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=88.89  E-value=15  Score=34.12  Aligned_cols=90  Identities=10%  Similarity=0.159  Sum_probs=53.5

Q ss_pred             CCcEEEEECCCC----eeEEEEccC-CCceEEEEEeCCCcEEEEEcC----------------C--cEEEEeCCCCeEEe
Q psy8895         351 DCTIRLWDLAAG----KSLCTLTNH-KKSVRSVALHPTLYMFASASP----------------D--NIKQWKCPEGKFIQ  407 (479)
Q Consensus       351 d~~v~iwd~~~~----~~~~~~~~h-~~~v~~i~~~~~~~~l~s~s~----------------d--~i~~w~~~~~~~~~  407 (479)
                      +.+|.+|++..+    ..+.++.+. -...+.+.+.+++..+++..-                .  .+..++.  ++. .
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~  214 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-R  214 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-E
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-E
Confidence            456667666543    123344432 235789999999988777541                1  2444443  222 1


Q ss_pred             eecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCC
Q psy8895         408 NLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRT  443 (479)
Q Consensus       408 ~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~  443 (479)
                      .+...-..-+.++++||+ . +++-+..++|..|++..
T Consensus       215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence            222222346889999998 4 45556678999999873

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=88.70  E-value=12  Score=33.37  Aligned_cols=64  Identities=13%  Similarity=0.177  Sum_probs=37.4

Q ss_pred             CCcEEEEEeCC----CeEEEEECCCCceEEEEecCCcCE-EEEEEcCCCCEEEEEECC------CcEEEEECCCCC
Q psy8895         230 GNEWFATGSAD----KIIKVWDLATGKLKLSLTGHVGSV-RGLTVSPRHPYLFSCGDD------RTVKCWDLEYNK  294 (479)
Q Consensus       230 ~g~~l~sgs~d----~~i~iWd~~~~~~~~~~~~h~~~v-~~v~~~~~~~~l~s~~~d------~~i~~wd~~~~~  294 (479)
                      +++.++.|+.+    ..+.++|+.+++....-....... .+++. -++..++.||.+      ..+.+||+.+..
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~  129 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AEGKIYTSGGSEVGNSALYLFECYDTRTES  129 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-ECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence            56777777754    578889998876543221111111 12222 256666777655      468889987654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=88.11  E-value=16  Score=33.69  Aligned_cols=101  Identities=17%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE--EEEe---cCCcCEEEEEEcCC---CCEEEEE-ECC-----CcE
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK--LSLT---GHVGSVRGLTVSPR---HPYLFSC-GDD-----RTV  285 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~--~~~~---~h~~~v~~v~~~~~---~~~l~s~-~~d-----~~i  285 (479)
                      ..-..++|.|+|+++++ ..++.|.+++  .++..  ..+.   .-......++++|+   +..|+.+ ...     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34568999999986655 5669999998  44321  1111   11346789999998   4444433 322     567


Q ss_pred             EEEECCCCC-----cccC-CCC-CCCCCCeEEEEEeCCCCEEEEE
Q psy8895         286 KCWDLEYNK-----APVQ-PGS-MDSESGIFSMTFDNSGSRLITT  323 (479)
Q Consensus       286 ~~wd~~~~~-----~~~~-~~~-~~~~~~i~~~~~~~~~~~l~~~  323 (479)
                      ..++.....     .... ... .........++|.|++...++.
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            777765321     1111 100 0111223478999999755553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.69  E-value=13  Score=41.20  Aligned_cols=202  Identities=13%  Similarity=0.140  Sum_probs=101.5

Q ss_pred             EcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCC---CC
Q psy8895         227 VEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS---MD  303 (479)
Q Consensus       227 ~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~  303 (479)
                      .+|..+.||--. ..++.|+|+.+...++.+.... .|.-=.|-... .|+-. .+..|.-|+++....+.....   .-
T Consensus        73 MnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~-~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L  148 (1630)
T 1xi4_A           73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHSSL  148 (1630)
T ss_pred             cCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCC-eeEEE-cCCeEEEeccCCCCccHHHHhcchhc
Confidence            455555544433 6799999999887777766544 34333443222 22222 345799999965333322111   11


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe--
Q psy8895         304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH--  381 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~--  381 (479)
                      ....|..-..+++.+.++..+...             .     .+.-.|.+.+|..+.+ .-..++||......+...  
T Consensus       149 ~~~QIinY~~d~~~kW~~l~gi~~-------------~-----~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~  209 (1630)
T 1xi4_A          149 AGCQIINYRTDAKQKWLLLTGISA-------------Q-----QNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGN  209 (1630)
T ss_pred             ccCeeEEeeeCCCCCeEEEEeecc-------------C-----CCcccceeeeeecccc-cchhhhHhHhhhheeccCCC
Confidence            235566667777777665432210             0     0122456777766543 222345554433333221  


Q ss_pred             -CCCcEEEEEcC----CcEEEEeCCCC---e--EEee---ecC----CcceEEEEEEcC-CCEEEEEeCCCcEEEEecCC
Q psy8895         382 -PTLYMFASASP----DNIKQWKCPEG---K--FIQN---LPG----HNAIINSICVNN-EGVLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       382 -~~~~~l~s~s~----d~i~~w~~~~~---~--~~~~---~~~----h~~~v~~l~~~~-~~~l~sg~~dg~i~lWd~~~  443 (479)
                       +...+|.-+..    .++.+-++...   .  ..+.   +.-    -.+..-++-+++ .|.+..-..-|.|.++|+.|
T Consensus       210 ~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          210 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             CCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEeccc
Confidence             11223322221    24666665332   1  1100   000    112223344454 35555566789999999999


Q ss_pred             CeEEEEEE
Q psy8895         444 GYNFQRLQ  451 (479)
Q Consensus       444 ~~~~~~~~  451 (479)
                      |.++.+-+
T Consensus       290 ~~~i~~~r  297 (1630)
T 1xi4_A          290 GTCIYMNR  297 (1630)
T ss_pred             chhhhhcc
Confidence            98886544

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=86.41  E-value=14  Score=32.78  Aligned_cols=170  Identities=15%  Similarity=0.183  Sum_probs=80.0

Q ss_pred             CCcEEEEEeCC-----CeEEEEECCCCc---eEEEEecCCcC-EEEEEEcCCCCEEEEEECC-----CcEEEEECCCCCc
Q psy8895         230 GNEWFATGSAD-----KIIKVWDLATGK---LKLSLTGHVGS-VRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYNKA  295 (479)
Q Consensus       230 ~g~~l~sgs~d-----~~i~iWd~~~~~---~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~  295 (479)
                      +++.++.|+.+     ..+.+||+.+.+   ....-...... -.+++.. ++..++.||.+     ..+.+||+.+.+.
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W  140 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW  140 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence            46777777754     468899998876   43221111111 1122222 56666666643     3688889876543


Q ss_pred             ccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC--
Q psy8895         296 PVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD--  351 (479)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d--  351 (479)
                      ............-..+.+  ++..++.|+.+     ..+..||.....       .          .....++.|+.+  
T Consensus       141 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~  218 (301)
T 2vpj_A          141 SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT  218 (301)
T ss_dssp             EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCC
Confidence            211100011111112222  45555555443     346667754321       0          012345556543  


Q ss_pred             ---CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCe
Q psy8895         352 ---CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGK  404 (479)
Q Consensus       352 ---~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~  404 (479)
                         ..+.+||+.+.+=  +..+........++.+  ++.+++.++.+      .+.++|..+.+
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             cccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence               4688899887642  2222211222222222  44555555432      25667766543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=85.17  E-value=3.6  Score=37.89  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=66.0

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCC-cCEEEEEE--cC-CCCEEEEE-ECCCcEEEEECCCCCcccCCCC--CC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHV-GSVRGLTV--SP-RHPYLFSC-GDDRTVKCWDLEYNKAPVQPGS--MD  303 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~--~~-~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~--~~  303 (479)
                      +..++.++.||.|.-.|..+|+.++.++... .++....-  .+ ++..++.. ..||.|..+|.+++........  .-
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            3578889999999999999999999887541 12221110  01 22233232 5788888888765422110000  00


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      ..+++.   ..  +.-++          -|.  ........+++|+.++++...|+++|+.+.++.
T Consensus        90 ~~SP~~---~~--~~pvv----------~~~--~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~  138 (339)
T 2be1_A           90 STSPLH---LK--TNIVV----------NDS--GKIVEDEKVYTGSMRTIMYTINMLNGEIISAFG  138 (339)
T ss_dssp             TTCSEE---EE--CC----------------------CCEEEEECEEEEEEEEEETTTCCEEEEES
T ss_pred             eccccc---cC--CCcee----------ecc--cccccCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence            000000   00  00000          000  000123457889999999999999999998885

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=83.96  E-value=18  Score=33.36  Aligned_cols=68  Identities=10%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             EEEEE--cCC-Cc-EEEEEeCCCeEEEEECC---CC----ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         223 RCVAV--EPG-NE-WFATGSADKIIKVWDLA---TG----KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       223 ~~~~~--~~~-g~-~l~sgs~d~~i~iWd~~---~~----~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      ..+++  +|. ++ +++....++.+..|++.   .+    +.+.++.- .+.+..+.+.+....|+.+-+|.-|..+|.+
T Consensus       131 yGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~  209 (355)
T 3amr_A          131 YGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAE  209 (355)
T ss_dssp             CCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred             eEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence            34444  664 44 67778888999999883   33    34455553 3467888899888889999888666555643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=82.60  E-value=1.9  Score=39.74  Aligned_cols=111  Identities=12%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEEEEccCC-CceEEEEE--e-CCCcEEEEE--cCCcEEEEeCCCCeEEeeecC----C
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHK-KSVRSVAL--H-PTLYMFASA--SPDNIKQWKCPEGKFIQNLPG----H  412 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~-~~v~~i~~--~-~~~~~l~s~--s~d~i~~w~~~~~~~~~~~~~----h  412 (479)
                      ..++.++.||.|.-.|..+|+.+.+++... .++....-  . .++..++..  .++.+..++..+|.......-    .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            457889999999999999999999886431 12111100  0 122344442  344577777777644322211    1


Q ss_pred             cceEEE---EEE------cCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         413 NAIINS---ICV------NNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       413 ~~~v~~---l~~------~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      ..++..   ..+      +.++.+++|+.+|++.--|.+||+.+.++...
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            111110   001      25668899999999999999999988777544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=82.36  E-value=21  Score=31.88  Aligned_cols=169  Identities=10%  Similarity=0.167  Sum_probs=78.5

Q ss_pred             CCcEEEEEeC----C-----CeEEEEECCCCceEEEEecCC--cCEEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q psy8895         230 GNEWFATGSA----D-----KIIKVWDLATGKLKLSLTGHV--GSVRGLTVSPRHPYLFSCGDD-----RTVKCWDLEYN  293 (479)
Q Consensus       230 ~g~~l~sgs~----d-----~~i~iWd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~l~s~~~d-----~~i~~wd~~~~  293 (479)
                      +++.++.|+.    +     ..+.++|+.+.+....-....  ..-..+.+  ++..++.||.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            4666666665    2     467889988775432211111  11112222  55566666533     46888998765


Q ss_pred             CcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-----CeEEEEeCCCCC-------C----------CCCCeEEEEeCC
Q psy8895         294 KAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-----KTVKLYKEDDSA-------T----------EESHPVITGSHD  351 (479)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~~~~~~~~-------~----------~~~~~l~sgs~d  351 (479)
                      +.............-..+.+  ++..++.|+.+     ..+..||.....       .          .....++.|+.+
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  225 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD  225 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCC
Confidence            43221111111111122222  44555555443     346677754321       0          012344555543


Q ss_pred             -----CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcC------CcEEEEeCCCCe
Q psy8895         352 -----CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASP------DNIKQWKCPEGK  404 (479)
Q Consensus       352 -----~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~------d~i~~w~~~~~~  404 (479)
                           ..+.+||+.+.+=  +..+........ +... ++.+++.++.      +.+.++|..+.+
T Consensus       226 ~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          226 GQDQLNSVERYDVETETWTFVAPMKHRRSALG-ITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             SSSBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEEE-TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             CCCccceEEEEeCCCCcEEECCCCCCCccceE-EEEE-CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence                 4688888877532  111221122222 2222 4455555542      236677776553

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=82.13  E-value=27  Score=31.00  Aligned_cols=170  Identities=13%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             CCcEEEEEeCC-----CeEEEEECCCCceEEEEecCCcC-EEEEEEcCCCCEEEEEECCC-----cEEEEECCCCCcccC
Q psy8895         230 GNEWFATGSAD-----KIIKVWDLATGKLKLSLTGHVGS-VRGLTVSPRHPYLFSCGDDR-----TVKCWDLEYNKAPVQ  298 (479)
Q Consensus       230 ~g~~l~sgs~d-----~~i~iWd~~~~~~~~~~~~h~~~-v~~v~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~  298 (479)
                      +++.++.|+.+     ..+.+||..+.+....-...... -.+++.. ++..++.||.++     .+.+||+.+.+....
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~  139 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV  139 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-CCEEEEEcCCCCCccCceEEEEeCCCCeEeec
Confidence            56677777754     35888998877543321111111 1122222 556667776553     577888876543221


Q ss_pred             CCCCCCCCCeEEEEEeCCCCEEEEEeC-------CCeEEEEeCCCCC-------C----------CCCCeEEEEeCC---
Q psy8895         299 PGSMDSESGIFSMTFDNSGSRLITTEA-------DKTVKLYKEDDSA-------T----------EESHPVITGSHD---  351 (479)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-------d~~i~~~~~~~~~-------~----------~~~~~l~sgs~d---  351 (479)
                      ............+.+  ++...+.|+.       ...+..||.....       .          ....+++.|+.+   
T Consensus       140 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  217 (302)
T 2xn4_A          140 APMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL  217 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS
T ss_pred             CCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc
Confidence            111111111122222  3445555433       2346677764321       0          012345556543   


Q ss_pred             --CcEEEEECCCCee--EEEEccCCCceEEEEEeCCCcEEEEEcCC------cEEEEeCCCCe
Q psy8895         352 --CTIRLWDLAAGKS--LCTLTNHKKSVRSVALHPTLYMFASASPD------NIKQWKCPEGK  404 (479)
Q Consensus       352 --~~v~iwd~~~~~~--~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------~i~~w~~~~~~  404 (479)
                        ..+.+||..+.+=  +..+....... ++... ++.+++.++.+      .+.+||..+.+
T Consensus       218 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          218 VRKSVEVYDPTTNAWRQVADMNMCRRNA-GVCAV-NGLLYVVGGDDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred             ccceEEEEeCCCCCEeeCCCCCCccccC-eEEEE-CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence              3688889877532  22221111111 22222 45555555432      37788876654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=80.64  E-value=2.1  Score=36.70  Aligned_cols=102  Identities=13%  Similarity=0.068  Sum_probs=57.3

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce------EEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKL------KLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~------~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      .+..++|+|+|.+.+.  .++.+.--+..+...      -..+-  +-.. -.++.|.|+|.+.++  .|+.|.-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            5669999999986665  566644444433211      01110  1111 368899999977666  668888776532


Q ss_pred             CCcc-c-CCCC-CCC--CCCeEEEEEeCCCCEEEEEeCCCeE
Q psy8895         293 NKAP-V-QPGS-MDS--ESGIFSMTFDNSGSRLITTEADKTV  329 (479)
Q Consensus       293 ~~~~-~-~~~~-~~~--~~~i~~~~~~~~~~~l~~~~~d~~i  329 (479)
                      .... . -... ...  =..+..+.+.|+|...++.  ++.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            1110 0 0000 000  0246788899999877766  5553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=80.40  E-value=34  Score=31.24  Aligned_cols=64  Identities=8%  Similarity=-0.095  Sum_probs=33.3

Q ss_pred             CCcEEEEEeCC-CeEEEEECCC--CceEEEEecC-CcC-EEEEEEcCCCCEEEEEEC-C---------CcEEEEECCCCC
Q psy8895         230 GNEWFATGSAD-KIIKVWDLAT--GKLKLSLTGH-VGS-VRGLTVSPRHPYLFSCGD-D---------RTVKCWDLEYNK  294 (479)
Q Consensus       230 ~g~~l~sgs~d-~~i~iWd~~~--~~~~~~~~~h-~~~-v~~v~~~~~~~~l~s~~~-d---------~~i~~wd~~~~~  294 (479)
                      +++.++.|+.+ ..+.++|+.+  .+....-... ... -.+++.. ++.+++.||. +         ..+.+||+.+.+
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~   97 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS   97 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence            56666776643 4688888864  3322111111 111 1122222 4556666665 2         468889987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-29
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-27
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-26
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-25
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-23
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-18
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-12
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-18
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-17
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-14
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-17
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-12
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-16
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-15
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-11
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-15
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-13
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-15
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-13
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-11
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-13
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-09
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-09
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-05
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (286), Expect = 3e-29
 Identities = 59/310 (19%), Positives = 114/310 (36%), Gaps = 4/310 (1%)

Query: 26  IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
                GH S V  +  HP   V+++A  D+T +VWD  T     TL GHT+++  +    
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

Query: 86  SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIR--PWQLQIIQEQCFLNLQ 143
           S   + + +  +               +     ++     +      +   +++     +
Sbjct: 70  SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129

Query: 144 EVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKP 203
               + V T                  L+ S  N              +A+ +       
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189

Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS 263
                 +                      +  +GS DK IK+WD++TG   ++L GH   
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249

Query: 264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT 323
           VRG+       ++ SC DD+T++ WD + NK  ++  +   E  + S+ F  +   ++T 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYK-NKRCMKTLN-AHEHFVTSLDFHKTAPYVVTG 307

Query: 324 EADKTVKLYK 333
             D+TVK+++
Sbjct: 308 SVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  114 bits (285), Expect = 4e-29
 Identities = 63/286 (22%), Positives = 107/286 (37%), Gaps = 41/286 (14%)

Query: 205 WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264
           W         +SGH   V  V   P      + S D  IKVWD  TG  + +L GH  SV
Sbjct: 3   WIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV 62

Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
           + ++       L SC  D T+K WD +  +        D      S+  +  G  +++  
Sbjct: 63  QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSAS 120

Query: 325 ADKTVKLYKEDD-----------------SATEESHPVITGSHDCTIRLWDLAAGKSLCT 367
            DKT+K+++                       ++   + + S+D T+R+W +A  +    
Sbjct: 121 RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE 180

Query: 368 LTNHKKSVRSVALH--------------------PTLYMFASASPDN-IKQWKCPEGKFI 406
           L  H+  V  ++                             S S D  IK W    G  +
Sbjct: 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240

Query: 407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451
             L GH+  +  +  ++ G  ++S AD+ T+  WD++     + L 
Sbjct: 241 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (269), Expect = 7e-27
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 9/244 (3%)

Query: 199 PMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258
              K      ++  R + GH   V  V++ P  +   + S DK IK+W++ TG    + T
Sbjct: 81  MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 140

Query: 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS 318
           GH   VR +  +     + SC +D+TV+ W +   +   +    +    +  +++    S
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE--LREHRHVVECISWAPESS 198

Query: 319 RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378
               +EA  +                +++GS D TI++WD++ G  L TL  H   VR V
Sbjct: 199 YSSISEATGSETKKSGKPG-----PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253

Query: 379 ALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTM 436
             H       S + D  ++ W     + ++ L  H   + S+  +     +V+G+ + T+
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313

Query: 437 CFWD 440
             W+
Sbjct: 314 KVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.6 bits (236), Expect = 2e-22
 Identities = 63/315 (20%), Positives = 109/315 (34%), Gaps = 66/315 (20%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLT--------------------------VIRHYHGHLS 34
           VWD  TG  + +L GH  SV+ ++                           IR  HGH  
Sbjct: 43  VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 102

Query: 35  SVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKT 94
           +V+++S+ P  D +++A RD T ++W+V+T   V T TGH   +  V        + + +
Sbjct: 103 NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 162

Query: 95  VLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLV 154
                                      +  T+R W +   + +  L         +    
Sbjct: 163 ---------------------------NDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 155 FRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRV 214
             S     +   S  +        L+  +   T  +                +       
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW-------------DVSTGMCLMT 242

Query: 215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHP 274
           + GH  WVR V    G ++  + + DK ++VWD    +   +L  H   V  L      P
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP 302

Query: 275 YLFSCGDDRTVKCWD 289
           Y+ +   D+TVK W+
Sbjct: 303 YVVTGSVDQTVKVWE 317

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  105 bits (262), Expect = 9e-26
 Identities = 47/296 (15%), Positives = 96/296 (32%), Gaps = 27/296 (9%)

Query: 188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD 247
                  ++      P      +  R + GHL  +  +     +    + S D  + +WD
Sbjct: 24  ACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD 83

Query: 248 LATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE-YNKAPVQPGSMDSES 306
             T     ++      V     +P   Y+   G D     ++L+           +   +
Sbjct: 84  SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHT 143

Query: 307 GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV-----------------ITGS 349
           G  S       ++++T+  D T  L+  +      +                    ++G+
Sbjct: 144 GYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203

Query: 350 HDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN---IKQWKCPEGKFI 406
            D + +LWD+  G    T T H+  + ++   P    FA+ S D    +   +  +    
Sbjct: 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 407 QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ-----VRCVS 456
            +       I S+  +  G +L++G D+     WD         L      V C+ 
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  103 bits (256), Expect = 6e-25
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 26/198 (13%)

Query: 202 KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV 261
                   +     +GH G V  +++ P    F +G+ D   K+WD+  G  + + TGH 
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
             +  +   P      +  DD T + +DL  ++  +     +   GI S++F  SG  L 
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL- 285

Query: 322 TTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH 381
                                   + G  D    +WD         L  H   V  + + 
Sbjct: 286 ------------------------LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT 321

Query: 382 PTLYMFASASPDN-IKQW 398
                 A+ S D+ +K W
Sbjct: 322 DDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (212), Expect = 3e-19
 Identities = 42/314 (13%), Positives = 90/314 (28%), Gaps = 23/314 (7%)

Query: 23  LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVV 82
           +   R   GHL+ +  +       +L++A +D    +WD  T   V+ +   ++ + +  
Sbjct: 45  MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCA 104

Query: 83  TQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNL 142
              S   V             ++ L T    +     L            +   Q   + 
Sbjct: 105 YAPSGNYVACGG---LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPK 202
            +           +              L  + + +L  + A +                
Sbjct: 162 GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK------------ 209

Query: 203 PQWHAP-WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKV--WDLATGKLKLSLTG 259
             W        +  +GH   +  +   P    FATGS D   ++         +  S   
Sbjct: 210 -LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268

Query: 260 HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESG-IFSMTFDNSGS 318
            +  +  ++ S     L +  DD     WD        + G +      +  +   + G 
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD---RAGVLAGHDNRVSCLGVTDDGM 325

Query: 319 RLITTEADKTVKLY 332
            + T   D  +K++
Sbjct: 326 AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.7 bits (187), Expect = 6e-16
 Identities = 15/87 (17%), Positives = 24/87 (27%)

Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
                   +       +  +  V+          G  D    VWD         L GH  
Sbjct: 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN 313

Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWD 289
            V  L V+     + +   D  +K W+
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.9 bits (133), Expect = 3e-09
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 28/109 (25%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTV----------------------------IRHYHGH 32
           +WD+  G  + + TGH   +  +                                 +   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNI 269

Query: 33  LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASV 81
           +  + ++S   +  +L+    D    VWD         L GH N ++ +
Sbjct: 270 ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCL 318

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 16/61 (26%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           VWD         L GH   V                + + +      + T   DS  ++W
Sbjct: 296 VWDALKADRAGVLAGHDNRV----------------SCLGVTDDGMAVATGSWDSFLKIW 339

Query: 61  D 61
           +
Sbjct: 340 N 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 1e-23
 Identities = 66/398 (16%), Positives = 114/398 (28%), Gaps = 76/398 (19%)

Query: 2   WDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWD 61
           W     K    L GH   V                    L    + +++   D+T +VW 
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-----------------CLQFCGNRIVSGSDDNTLKVWS 43

Query: 62  VRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLL 121
             T   + TL GHT  + S         +        + +      G     L    S +
Sbjct: 44  AVTGKCLRTLVGHTGGVWSS---QMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 100

Query: 122 DFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVP 181
               +   ++        L + +++      ++   +     +    + +V    + +V 
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV- 159

Query: 182 TTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADK 241
                               K            + GH   V  +  +       +GS D 
Sbjct: 160 --------------------KVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDT 197

Query: 242 IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
            I+VWD+ TG    +LTGH     G+ +      L S   D TVK WD++  +       
Sbjct: 198 SIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA 361
            +      +    N                              IT S D T++LWDL  
Sbjct: 256 PNKHQSAVTCLQFNKNFV--------------------------ITSSDDGTVKLWDLKT 289

Query: 362 GKSLCTLTN-----HKKSVRSVALHPTLYMFASASPDN 394
           G+ +  L           V  +    T  + A  S + 
Sbjct: 290 GEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (231), Expect = 1e-21
 Identities = 59/258 (22%), Positives = 91/258 (35%), Gaps = 14/258 (5%)

Query: 207 APWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG 266
              K  +V+ GH   V    ++       +GS D  +KVW   TGK   +L GH G V  
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 62

Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT---- 322
             +        S      V   +       +   +              SGSR  T    
Sbjct: 63  SQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVW 122

Query: 323 -----TEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS 377
                      +           +   V++G++D  +++WD      L TL  H   V S
Sbjct: 123 DIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 182

Query: 378 VALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTM 436
           +          S S D  I+ W    G  I  L GH ++ + + +  + +LVSG  + T+
Sbjct: 183 LQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL-KDNILVSGNADSTV 239

Query: 437 CFWDWRTGYNFQRLQVRC 454
             WD +TG   Q LQ   
Sbjct: 240 KIWDIKTGQCLQTLQGPN 257

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 8e-09
 Identities = 42/303 (13%), Positives = 83/303 (27%), Gaps = 12/303 (3%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVN-TISLHPTIDVLITAGRDSTARV 59
           VW   TGK   +L GH G V    +  +     S+       +      I      T+ V
Sbjct: 41  VWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTV 100

Query: 60  WDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPS 119
             +              T+     +  +        +                    +  
Sbjct: 101 RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160

Query: 120 LLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQL 179
           + D  T               +LQ    H V   +  S++       +C   +   ++  
Sbjct: 161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT 220

Query: 180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSA 239
                 +  ++       + +   +     +  +  + H   V C+       +  T S 
Sbjct: 221 SGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSD 278

Query: 240 DKIIKVWDLATGKLKLSLT-----GHVGSVRGLTVSPRHPYLFSCGDDRT----VKCWDL 290
           D  +K+WDL TG+   +L      G  G V  +  S           + T    +   D 
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338

Query: 291 EYN 293
           + +
Sbjct: 339 DVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 2e-06
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAI 415
           W     KS   L  H   V +  L        S S DN +K W    GK ++ L GH   
Sbjct: 1   WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59

Query: 416 INSICVNNEGVLVSGADNGTMCFWDWRTGYNFQ 448
           + S  + +  ++    D     +          
Sbjct: 60  VWSSQMRDNIIISGSTDRTLKVWNAETGECIHT 92

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 398 WKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ 451
           W+  E K  + L GH+  + +        +VSG+D+ T+  W   TG   + L 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.6 bits (228), Expect = 5e-21
 Identities = 67/388 (17%), Positives = 114/388 (29%), Gaps = 72/388 (18%)

Query: 26  IRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQA 85
           +     H S V  +      + L T   + T +V+ V   + V  L+  +          
Sbjct: 55  LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 113

Query: 86  SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
           +     +                   ++ S   S          + ++I+     N + V
Sbjct: 114 TSSSPSSD-----------------LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 156

Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
                H     SL                                           +   
Sbjct: 157 MILQGHEQDIYSLDYFPSGDKLVS-------------------------GSGDRTVRIWD 191

Query: 206 HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-------T 258
               +    +S   G           ++ A GS D+ ++VWD  TG L   L       T
Sbjct: 192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251

Query: 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS 318
           GH  SV  +  +     + S   DR+VK W+L+         + +S +   +        
Sbjct: 252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 311

Query: 319 RLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV 378
             + T  +                  +++GS D  +  WD  +G  L  L  H+ SV SV
Sbjct: 312 LSVATTQNDEY---------------ILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356

Query: 379 A------LHPTLYMFASASPDN-IKQWK 399
           A      L P   +FA+ S D   + WK
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.4 bits (199), Expect = 3e-17
 Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 15/303 (4%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIR--HYHGHLSSVNTISLHPTIDVLITAGRDSTAR 58
           V+ ++ G L   L+    + +    +           + ++   P    L T   D   R
Sbjct: 87  VYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIR 146

Query: 59  VWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP 118
           +WD+  +  V  L GH   I S+    S  ++        +        G     LS   
Sbjct: 147 IWDIENRKIVMILQGHEQDIYSLDYFPSGDKL-VSGSGDRTVRIWDLRTGQCSLTLSIED 205

Query: 119 SLLDFGTIRPWQLQIIQ----EQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPS 174
            +            I          +   E                 H   +    +V +
Sbjct: 206 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYS--VVFT 263

Query: 175 TENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWF 234
            + Q V + + +  +       A      +            GH  +V  VA    +E+ 
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323

Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV------SPRHPYLFSCGDDRTVKCW 288
            +GS D+ +  WD  +G   L L GH  SV  + V       P +    +   D   + W
Sbjct: 324 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383

Query: 289 DLE 291
             +
Sbjct: 384 KYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.5 bits (189), Expect = 4e-16
 Identities = 53/289 (18%), Positives = 87/289 (30%), Gaps = 55/289 (19%)

Query: 217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTG----------------- 259
            H   V CV      E+ ATG  +K  +V+ ++ G L   L+                  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 260 -HVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS 318
                +R +  SP   +L +  +DR ++ WD+E  K  +     + +             
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 319 RL---------------ITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGK 363
                              +              +  +   +  GS D  +R+WD   G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 364 SLCTL-------TNHKKSVRSVALHPTLYMFASASPDN-------------IKQWKCPEG 403
            +  L       T HK SV SV          S S D                      G
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 404 KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ 451
                  GH   + S+        ++SG+ +  + FWD ++G     LQ
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.4 bits (186), Expect = 1e-15
 Identities = 58/284 (20%), Positives = 96/284 (33%), Gaps = 46/284 (16%)

Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
                             ++R V   P  ++ ATG+ D++I++WD+   K+ + L GH  
Sbjct: 105 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 164

Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT 322
            +  L   P    L S   DRTV+ WDL   +  +     D             G  +  
Sbjct: 165 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAVSPGDGKYIAA 222

Query: 323 TEADKTVKLYKEDDSATEESHP------------------------VITGSHDCTIRLWD 358
              D+ V+++  +     E                           V++GS D +++LW+
Sbjct: 223 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 282

Query: 359 LAAGKS------------LCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF 405
           L    +              T   HK  V SVA         S S D  +  W    G  
Sbjct: 283 LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342

Query: 406 IQNLPGHNAIINSICVNN-------EGVLVSGADNGTMCFWDWR 442
           +  L GH   + S+ V N         V  +G+ +     W ++
Sbjct: 343 LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 23/134 (17%)

Query: 344 PVITGSHDCTIRLWDLAAGK----SLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWK 399
             +    +    L++ A  +     L    +H   V  V         A+      + ++
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYR 89

Query: 400 CPEGKFIQNL------------------PGHNAIINSICVNNEGVL-VSGADNGTMCFWD 440
             +G  +  L                  P  +  I S+C + +G    +GA++  +  WD
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

Query: 441 WRTGYNFQRLQVRC 454
                    LQ   
Sbjct: 150 IENRKIVMILQGHE 163

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.8 bits (205), Expect = 4e-18
 Identities = 55/430 (12%), Positives = 124/430 (28%), Gaps = 73/430 (16%)

Query: 31  GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRT------KANVYTLTGHTNTIASVVTQ 84
            H + + ++S        ++   D   +VWD +       K   Y+   H + +  V   
Sbjct: 12  AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 85  ASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQE 144
            +  +   +  L+ +                        G +  +++    E      ++
Sbjct: 70  QAIERDAFELCLVATTS--------------------FSGDLLFYRITREDE-----TKK 104

Query: 145 VQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQ 204
           V    +  L     K +               ++LV T    T  I +    A       
Sbjct: 105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164

Query: 205 WHAPWKLY-----RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWD------LATGKL 253
            +    L              +   V +       ATG  +  +++ +      L   + 
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFES 223

Query: 254 KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTF 313
           + S+  +  S+R +  SP+   L    D  +  C               ++E G    + 
Sbjct: 224 QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT-----------LYETEFGERIGSL 272

Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
                    +  +     +    S  +    + +   D  +R WD+   + + TL  H  
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD 332

Query: 374 SVR----SVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
            +      +A+       A     ++K  K    K  ++  G +         NE +   
Sbjct: 333 DIEIEEDILAVDEHGDSLAEPGVFDVKFLK----KGWRSGMGAD--------LNESLCCV 380

Query: 430 GADNGTMCFW 439
             D  ++ ++
Sbjct: 381 CLDR-SIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 27/267 (10%), Positives = 64/267 (23%), Gaps = 50/267 (18%)

Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK------LSLTGHVGSVRGL 267
               H   +  V+      +  + S D  +KVWD      +       S   H   +  +
Sbjct: 9   AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 268 TV-------SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRL 320
            V       +     + +      +  + +              E     + F+      
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRIT------------REDETKKVIFEKLDLLD 114

Query: 321 ITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL 380
              +      L     +    SH ++      T  +W                S      
Sbjct: 115 SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS------ 168

Query: 381 HPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440
                                    +++    +    S+ ++  G++ +G +NGT+   +
Sbjct: 169 -----------------PTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 441 WRTGYNFQRLQVRCVSGFPKPSVFFFF 467
             T       + +        S+    
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVK 238

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 45/381 (11%), Positives = 85/381 (22%), Gaps = 47/381 (12%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           VWD      +        S          H              + ++ T         +
Sbjct: 38  VWDNKLLDNENPK---DKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
            +  +     +      +     +             +       V              
Sbjct: 95  RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVK--------- 145

Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
              GT   W+     ++                   S   T   F +    V  +E  L+
Sbjct: 146 ---GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP-MTPSQFATS---VDISERGLI 198

Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
            T  +N  +      +   +   +    ++    +  +   +R V   P     A     
Sbjct: 199 ATGFNNGTV------QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 241 KIIKVW----------------DLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT 284
                                    + +  L    H   V  L+ +     L S G D  
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK 312

Query: 285 VKCWDLEYNKAPVQ--PGSMDS-ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEE 341
           ++ WD++  K  +       D  E     +  D  G  L          L K   S    
Sbjct: 313 LRFWDVK-TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGA 371

Query: 342 SHP--VITGSHDCTIRLWDLA 360
                +     D +IR +  A
Sbjct: 372 DLNESLCCVCLDRSIRWFREA 392

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 81.6 bits (199), Expect = 8e-18
 Identities = 39/297 (13%), Positives = 81/297 (27%), Gaps = 28/297 (9%)

Query: 24  TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT-GHTNTIASV- 81
           ++ +  +GH  ++  +S       L +A  +     WD+ T  +       H   I  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 82  ---------------VTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTI 126
                          +        G  +    + +     LG A      +     +  I
Sbjct: 63  TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122

Query: 127 RPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASN 186
             +    + E            S          +   + +        +E + +   A  
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182

Query: 187 TQIIQQAKAKALPMP---------KPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATG 237
           T +        L                +         + H   V CV+  P N   ATG
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG 242

Query: 238 SADKIIKVWDLATGKLKLSLTGHVGSVRGLTV--SPRHPYLFSCGDDRTVKCWDLEY 292
           S D  + VW++        +     ++  +          + S G D  +K W++ +
Sbjct: 243 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 299

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.5 bits (152), Expect = 1e-11
 Identities = 30/276 (10%), Positives = 66/276 (23%), Gaps = 21/276 (7%)

Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLT 268
            + +V  GH   +  ++     +   +  A+  I  WD++TG         H   + G+ 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
                  LF+   D  +K      +         +  S        ++   +      K 
Sbjct: 63  T-TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 329 VKLYKEDDSATEESHPVIT--------------GSHDCTIRLWDLAAGKSLCTLTNHKKS 374
           + +Y              +              G            A  S      H   
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 375 VRSVALHPTLYMFASASPDNIKQ-----WKCPEGKFIQNLPGHNAIINSICVNNEGVLVS 429
           + SVA         +                              +       +   L +
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 430 GADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFF 465
           G+ + ++  W+     +   +     +     SV +
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.6 bits (103), Expect = 1e-05
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 251 GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
           G +     GH  ++  L+ S     LFS   +  +  WD+ 
Sbjct: 2   GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS 42

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.0 bits (91), Expect = 4e-04
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 343 HPVITGSHDCTIRLWDLAAGKSLCTLTN--HKKSVRSVALHPTLYMFASASPDN-IKQWK 399
             + TGS D ++ +W++        +    H  S  +  +        SA  D+ IK W 
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

Query: 400 CP 401
            P
Sbjct: 297 VP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 381 HPTLYMFASASPDN-IKQWKCPEGKFIQNL---PGHNAIINSICVNNEGVLVSGADNGTM 436
            P     A+ S DN +  W   +      +       + +NS+   NE  +VS   +  +
Sbjct: 233 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 292

Query: 437 CFWD 440
            FW+
Sbjct: 293 KFWN 296

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.8 bits (200), Expect = 1e-17
 Identities = 30/271 (11%), Positives = 68/271 (25%), Gaps = 42/271 (15%)

Query: 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRH 273
           S  +  + C A        A    +  + +++ +  K      L  H G V G+  +P  
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63

Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
             + +CG DR    W L+          +        + +  +  +       + + +  
Sbjct: 64  NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123

Query: 334 EDDSATEESHPVI---------------------TGSHDCTIRLWDLAAGKSL------- 365
            +          I                      GS D   R++     +         
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183

Query: 366 -----------CTLTNHKKSVRSVALHPTLYMFASAS-PDNIKQWKCPEGKFIQNLPGHN 413
                         ++    V  V         A  S    +      +   +  L    
Sbjct: 184 WGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243

Query: 414 AIINSICVNNEGVLVSGADNGTMCFWDWRTG 444
             + ++    E  LV+   +     + + + 
Sbjct: 244 LPLLAVTFITESSLVAAGHDCFPVLFTYDSA 274

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.3 bits (170), Expect = 8e-14
 Identities = 41/424 (9%), Positives = 96/424 (22%), Gaps = 71/424 (16%)

Query: 28  HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTK--ANVYTLTGHTNTIASVVTQA 85
           ++   +  ++  + +     +     +    +++        V+ L  H   +  V    
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 86  SEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEV 145
                                      +++C            W L+    +  L +  +
Sbjct: 62  DS-----------------------NRIVTCG----TDRNAYVWTLKGRTWKPTLVILRI 94

Query: 146 QRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQW 205
            R +       + K+      S    +            ++  + +  K           
Sbjct: 95  NRAARCVRWAPNEKKFAVGSGSRVISICYF------EQENDWWVCKHIKKPIRSTVLSLD 148

Query: 206 HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
             P  +           R  +                     +  G+L    +   G V 
Sbjct: 149 WHPNSVLLAAGSCDFKCRIFSAYIKE---VEERPAPTPWGSKMPFGELMFESSSSCGWVH 205

Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
           G+  S     +     D TV   D +   A     S        +   ++S         
Sbjct: 206 GVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS--------- 256

Query: 326 DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY 385
                              ++   HDC   L+   +     +        +  +      
Sbjct: 257 -------------------LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297

Query: 386 MFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-----VLVSGADNGTMCFWD 440
                + D     +            H   ++ I V + G        +   +G M  WD
Sbjct: 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357

Query: 441 WRTG 444
            R+ 
Sbjct: 358 VRSL 361

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 36/378 (9%), Positives = 93/378 (24%), Gaps = 47/378 (12%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           +++ +  K                 +     H   V  +   P  + ++T G D  A VW
Sbjct: 33  IYEKSGNKWVQ--------------VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
            ++ +    TL       A+   + +  +             I +      + +      
Sbjct: 79  TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138

Query: 121 LDFGTIR----PWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTE 176
               T+          ++          +    +  +  R         +   EL+  + 
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198

Query: 177 NQLVPTTA-SNTQIIQQAKAKALPMPKPQWHA-PWKLYRVISGHLGWVRCVAVEPGNEWF 234
           +          +    +    +         A        ++     +  V     +   
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLV 258

Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK 294
           A G       ++   +   KLS  G +   +  +             D+           
Sbjct: 259 AAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG 317

Query: 295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTI 354
           A +       ++ +  ++  + G    +                        T   D  +
Sbjct: 318 AGLDSL---HKNSVSQISVLSGGKAKCSQ---------------------FCTTGMDGGM 353

Query: 355 RLWDLAAGKSLCTLTNHK 372
            +WD+ + +S   L + K
Sbjct: 354 SIWDVRSLES--ALKDLK 369

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 2e-17
 Identities = 31/294 (10%), Positives = 70/294 (23%), Gaps = 31/294 (10%)

Query: 28  HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT-----GHTNTIASVV 82
           +   H   V  +++      + T G     +VWD+    N   ++        N I S  
Sbjct: 46  NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

Query: 83  TQASEPQV------GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQE 136
                  +       T ++   +               +C    +   +   +       
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164

Query: 137 QCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAK 196
               +L                          +      +N +        + +QQ    
Sbjct: 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT 224

Query: 197 A------------------LPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGS 238
           +                          H        +  H   V  +      +WF +  
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTG 284

Query: 239 ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY 292
            D ++  W    G   +  +    SV    +S    Y+ +   D+    +++ Y
Sbjct: 285 KDNLLNAWRTPYGAS-IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY 337

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 40/303 (13%), Positives = 82/303 (27%), Gaps = 29/303 (9%)

Query: 176 ENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPW-----KLYRVISGHLGWVRCVAVEPG 230
           +  +    A +  +    + + +P P      P      +    +  H   V  V +   
Sbjct: 4   QGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNP 62

Query: 231 NEWFATGSADKIIKVWDLATGKLK-----LSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285
                TG     +KVWD++    K     L        +R   + P    L   G+  T+
Sbjct: 63  TRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121

Query: 286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV 345
             WDL      ++     S    +++          +  +D  + ++   +         
Sbjct: 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181

Query: 346 ITGSHDCTIRLWDLAAGKS----------------LCTLTNHKKSVRSVALHPTLYMFAS 389
            T    C     D     +                     +    + S+   PT    A 
Sbjct: 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241

Query: 390 ASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ 448
               +  +           L  H + + S+     G   VS   +  +  W    G +  
Sbjct: 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301

Query: 449 RLQ 451
           + +
Sbjct: 302 QSK 304

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 31/242 (12%), Positives = 70/242 (28%), Gaps = 18/242 (7%)

Query: 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY 275
                ++R   + P       G     + +WDLA    ++       +     ++     
Sbjct: 94  LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153

Query: 276 LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED 335
                          + +   +         G   +   N G++L T   D TV+ +   
Sbjct: 154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213

Query: 336 DSATEESH---------------PVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL 380
           +    + H                 +    + +              L  H+  V S+  
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273

Query: 381 HPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCF 438
                 F S   DN +  W+ P G  I      ++ + S  ++ +   +V+G+ +     
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATV 332

Query: 439 WD 440
           ++
Sbjct: 333 YE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 17/62 (27%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
            W    G                          SSV +  +      ++T   D  A V+
Sbjct: 291 AWRTPYGASIFQS-----------------KESSSVLSCDISVDDKYIVTGSGDKKATVY 333

Query: 61  DV 62
           +V
Sbjct: 334 EV 335

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.9 bits (195), Expect = 6e-17
 Identities = 41/345 (11%), Positives = 98/345 (28%), Gaps = 33/345 (9%)

Query: 23  LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTL---TGHTNTIA 79
           + +++        ++ I + P+  +L+    D +  V+    +A    L     + + + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 80  SVVTQASEPQV---GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQE 136
                 +       GT    +   + I      A         +         +L     
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW 120

Query: 137 QCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAK 196
              + + + + +    +  ++L   +    +    + +  ++L+    ++     +    
Sbjct: 121 DGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLC 180

Query: 197 ALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS 256
                  +                      +    E +A  S D  + V          +
Sbjct: 181 EDDNGTIEESGLKY---------QIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231

Query: 257 L---------------TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGS 301
                           T     V  +  SPRH +L++ G D  + CW+L+  K       
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

Query: 302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI 346
            + +S    +    S + L    +D T K     D   E +   I
Sbjct: 292 FNEDS---VVKIACSDNILCLATSDDTFKTNAAIDQTIELNASSI 333

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.9 bits (156), Expect = 4e-12
 Identities = 24/282 (8%), Positives = 65/282 (23%), Gaps = 47/282 (16%)

Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL---TGHVGSVRG 266
           ++ ++      ++  + + P        S D  + V+        + L     +   +  
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD 326
                        G  +              Q  + +  +            +LI    D
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 327 KTVKLYKEDDSATEESHPVITGSH-----------------------DCTIRLWDLAAGK 363
             +++    +            S+                       +  ++ + L   +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181

Query: 364 SL----CTLTNHKKSVRSVALHPTLYMFASASPDN----------------IKQWKCPEG 403
                        +      L      +A +S D                  K++     
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241

Query: 404 KFIQNLPGHNAIINSICVN-NEGVLVSGADNGTMCFWDWRTG 444
           +           +NSI  +     L +   +G +  W+ +T 
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 20/226 (8%), Positives = 49/226 (21%), Gaps = 22/226 (9%)

Query: 199 PMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258
                            +      +   ++  +     G  +  ++ + L   +      
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187

Query: 259 GHVGS----VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFD 314
              G          +            D  V                 D +   ++ +  
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFF------------DDQGDDYNSSKR 235

Query: 315 NSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKS 374
            +         D  +         +     + T   D  I  W+L   K +         
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NE 294

Query: 375 VRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSI 419
              V +  +  +   A+ D+  K          Q +  + + I  I
Sbjct: 295 DSVVKIACSDNILCLATSDDTFKTN----AAIDQTIELNASSIYII 336

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 31/276 (11%), Positives = 72/276 (26%), Gaps = 20/276 (7%)

Query: 162 HDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGW 221
           +   + C   + +T+ Q+   T     +                 A   + R+       
Sbjct: 55  YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDK 114

Query: 222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD 281
           +   + +   E     +    +           L+        +  T+      L    +
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIAVK------NLNSNNTKVKNKIFTMDTNSSRLIVGMN 168

Query: 282 DRTVKCWDLEYNKAPVQPGSMDSESGIFSMT--FDNSGSRLITTEADKTVKLYKEDDSAT 339
           +  V+ + L   +                              +  D  V +   DD   
Sbjct: 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228

Query: 340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQW 398
           + +          + + +     +     TN    V S+   P      +A  D  I  W
Sbjct: 229 DYN----------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278

Query: 399 KCPEGKFIQNLPGHNAI-INSICVNNEGVLVSGADN 433
                K I+N    N   +  I  ++  + ++ +D+
Sbjct: 279 NLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 13/117 (11%), Positives = 30/117 (25%), Gaps = 7/117 (5%)

Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPT----LYMFASASPDNIKQ 397
           ++  S D ++ ++          L     +K  +            +Y+           
Sbjct: 26  LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85

Query: 398 WKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
                          N  I  IC   +  L++ + +G +   D R   +        
Sbjct: 86  LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 13/90 (14%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 371 HKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL---PGHNAIINSICV--NNE 424
            K  +  + + P+  +    S D  +  +K        +L     +   +       N +
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 425 GVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
             +  G   G +   D     +FQ L    
Sbjct: 70  LQIYVGTVQGEILKVDLIGSPSFQALTNNE 99

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (190), Expect = 1e-16
 Identities = 51/246 (20%), Positives = 86/246 (34%), Gaps = 18/246 (7%)

Query: 216 SGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY 275
           S     V C+     ++   +G  D  IK+WD  T + K  LTGH GSV  L    R   
Sbjct: 12  SETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 276 LFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKED 335
             S      V   +       +           F+     + S+  +             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 129

Query: 336 DSATEESHP------------VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPT 383
                  H             +++ S D TI++W+ +  + + TL  HK+ +  +     
Sbjct: 130 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD- 188

Query: 384 LYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWR 442
             +  S S DN I+ W    G  ++ L GH   +      +   +VSGA +G +  WD  
Sbjct: 189 -RLVVSGSSDNTIRLWDIECGACLRVLEGHE-ELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 443 TGYNFQ 448
              + +
Sbjct: 247 AALDPR 252

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 3e-14
 Identities = 45/293 (15%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 23  LTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVV 82
           L  I         V  +        +++  RD+T ++WD  T      LTGHT ++  + 
Sbjct: 5   LQRIHCRSETSKGVYCLQYDDQK--IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

Query: 83  -----------TQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQL 131
                                   +L +       +    F    + +     +I  W +
Sbjct: 63  YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDM 122

Query: 132 QIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQ 191
               +     +    R +V+ + F              ++  ++  + V T   + + I 
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA 182

Query: 192 QAKAKALPMPKPQWHAPWKLYRVISGHL------GWVRCVAVEPGNEWFATGSADKIIKV 245
             + +   +         +L+ +  G               +   N+   +G+ D  IKV
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

Query: 246 WDLATGKLKL---------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
           WDL                +L  H G V  L        + S   D T+  WD
Sbjct: 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 37/204 (18%), Positives = 65/204 (31%), Gaps = 43/204 (21%)

Query: 205 WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264
             +P  +               V+  +++  + S D+ IKVW+ +T +   +L GH   +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 265 RGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTE 324
             L    R   + S   D T++ WD+E           +                     
Sbjct: 182 ACLQYRDR--LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--------- 230

Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS---------LCTLTNHKKSV 375
                               +++G++D  I++WDL A            L TL  H   V
Sbjct: 231 --------------------IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 270

Query: 376 RSVALHPTLYMFASASPDN-IKQW 398
             +          S+S D+ I  W
Sbjct: 271 FRLQFDEF--QIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 37/265 (13%), Positives = 66/265 (24%), Gaps = 28/265 (10%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           +WD  T + K  LTGH GSV    +   Y   +    +      +  + T    +T    
Sbjct: 39  IWDKNTLECKRILTGHTGSV----LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH 94

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
                   +                 +    T   L          +    F    + S 
Sbjct: 95  CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSA 154

Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHT------------------LVFRSLKRTH 162
               TI+ W     +    LN  +     +                    +   +  R  
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 214

Query: 163 DMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWV 222
           +        +     ++V         +    A       P+  A     R +  H G V
Sbjct: 215 EGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL----DPRAPAGTLCLRTLVEHSGRV 270

Query: 223 RCVAVEPGNEWFATGSADKIIKVWD 247
             +  +       + S D  I +WD
Sbjct: 271 FRLQFDEF--QIVSSSHDDTILIWD 293

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (179), Expect = 3e-15
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 36/291 (12%)

Query: 25  VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQ 84
           V++   GH   +  ++++P    LI+   D     W   +         H+N I S+   
Sbjct: 5   VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNS 55

Query: 85  ASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQE 144
            ++               I      +   ++   +      +      +I +    ++ +
Sbjct: 56  KAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115

Query: 145 VQRHSVHTLVFRSLKRTHDMFISCQEL-------------------------VPSTENQL 179
             R +         +    + +                              +  + ++ 
Sbjct: 116 SVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET 175

Query: 180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSA 239
                     I     ++  +   +W         IS           E   +  ATGS 
Sbjct: 176 YIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235

Query: 240 DKIIKVWDLAT-GKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD 289
           D  I ++ +    K+  +L  H   V  L        L S G D  +K W+
Sbjct: 236 DTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.1 bits (146), Expect = 6e-11
 Identities = 26/253 (10%), Positives = 67/253 (26%), Gaps = 27/253 (10%)

Query: 210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
           ++ + ISGH   +  + V P      +GS D  I  W  ++         H   +  L  
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDN 54

Query: 270 SPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTV 329
           S    Y     DD        ++        +  +  G  ++  ++    ++ +     +
Sbjct: 55  SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114

Query: 330 KLYKEDDSATEESHPVITGSHDCT------------------IRLWDLAAGKSLCTLTNH 371
           K  + +   +  S      +                      ++    A    +    + 
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174

Query: 372 KKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGA 431
                   +   L     +      +W     K             +     E ++ +G+
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234

Query: 432 DNGTMCFWDWRTG 444
            +  +  +  +  
Sbjct: 235 LDTNIFIYSVKRP 247

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.2 bits (102), Expect = 2e-05
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 337 SATEESHPVITGSHDCTIRLWDLA-AGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI 395
               E   V TGS D  I ++ +    K +  L  HK  V ++       + +S +   I
Sbjct: 222 EEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACI 281

Query: 396 KQWK 399
           K+W 
Sbjct: 282 KRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 2e-04
 Identities = 20/250 (8%), Positives = 49/250 (19%), Gaps = 18/250 (7%)

Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           W    +   H   +  +      E+ +    D +                    +     
Sbjct: 36  WSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTA 95

Query: 269 VSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKT 328
           V      L             +  N          +   +     +      ++      
Sbjct: 96  VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSF 155

Query: 329 VKLYKEDDSAT----------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK 372
                     +                     +                   +  ++   
Sbjct: 156 DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 215

Query: 373 KSVRSVALHPTLYMFASASPDN-IKQWKCPE-GKFIQNLPGHNAIINSICVNNEGVLVSG 430
               +        + A+ S D  I  +      K I+ L  H   +N++       LVS 
Sbjct: 216 AEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSS 275

Query: 431 ADNGTMCFWD 440
             +  +  W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 362 GKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC 420
            + L T++ H K + ++ ++P      S S D  I +W             H+ +I S+ 
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLD 53

Query: 421 VNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPSVFFF 466
            +      S + + T+            + +V   +     +V   
Sbjct: 54  NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTN 99

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 402 EGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVS 456
             + ++ + GHN  I ++ VN    L+SG+ +G +  W   + +      +  + 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP---LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 53

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 11/125 (8%)

Query: 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPE 402
           +P+I+GS+D  I  W  ++        +H   + S+         + +  D +K     +
Sbjct: 22  NPLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 76

Query: 403 GKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGFPKPS 462
            +F       +A  +          V   D+  +    +              S      
Sbjct: 77  HEFGSQPKVASANNDGFTA------VLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQ 130

Query: 463 VFFFF 467
            +   
Sbjct: 131 NYVAV 135

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 250 TGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
             ++  +++GH   +  LTV+P    L S   D  +  W   
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 21  RGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDV 62
           R + +I+  + H   VN +        L+++G D+  + W+V
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWNV 286

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (179), Expect = 7e-15
 Identities = 43/321 (13%), Positives = 89/321 (27%), Gaps = 30/321 (9%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTV---------------------------IRHYHGHL 33
           V+D    K  L L+GH G V  L                             +   H   
Sbjct: 37  VYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNST 96

Query: 34  SSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTK 93
                I  +  I  ++T  RD+T  VW +  +++V       +      T    P     
Sbjct: 97  VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156

Query: 94  TVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTL 153
                +  R +   G      S   +L+ +   +   L I+          +  H     
Sbjct: 157 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 216

Query: 154 VFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYR 213
           +  S+  T  ++      +  T               +   + A       W A     +
Sbjct: 217 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 276

Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK-LKLSLTGHVGSVRGLTVSPR 272
               H            +    +GS +    +++L +GK +  ++      +  +    +
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335

Query: 273 HPYLFSCGDDRTVKCWDLEYN 293
              + +   D       L+++
Sbjct: 336 T-LVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.4 bits (178), Expect = 8e-15
 Identities = 58/412 (14%), Positives = 111/412 (26%), Gaps = 70/412 (16%)

Query: 31  GHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQV 90
           GH++SV T  L    + +IT   D   RV+D   K  +  L+GH   + ++         
Sbjct: 10  GHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK-------- 60

Query: 91  GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSV 150
                               G L+S                     +   +         
Sbjct: 61  ----------------YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104

Query: 151 HTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWK 210
           +  +   +  + D  +   +L               + +    +    P+          
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKL------------PKESSVPDHGEEHDYPLVFHTPEENPY 152

Query: 211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVS 270
              V+ GH+  VR V          +GS D  + VWD+A  K    L+GH   +      
Sbjct: 153 FVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD 210

Query: 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330
                  S   D T++ WDLE  +         +  G+  ++                  
Sbjct: 211 HERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS------------------ 252

Query: 331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA 390
                          +  +          A   S     +H         + +  +  S 
Sbjct: 253 ------------DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG 300

Query: 391 SPDNIKQWKCPEGKFIQ-NLPGHNAIINSICVNNEGVLVSGADNGTMCFWDW 441
           S +    +    GK +  N+      I S+    + ++ +   +G       
Sbjct: 301 SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 7e-13
 Identities = 47/259 (18%), Positives = 85/259 (32%), Gaps = 5/259 (1%)

Query: 214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRH 273
            + GH+  V    ++  + +  TG+ DK+I+V+D    K  L L+GH G V  L  +   
Sbjct: 7   TLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 274 PYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYK 333
             L S   DRTV+ WD++           +S      +    +   ++T   D T+ ++ 
Sbjct: 66  -ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW- 123

Query: 334 EDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD 393
                 E S P     HD  +             +     +           + + +  +
Sbjct: 124 --KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 394 NIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR 453
            +  W   + K +  L GH   I S   ++E      A   T                  
Sbjct: 182 TLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG 241

Query: 454 CVSGFPKPSVFFFFLAFSY 472
             +      +   FL  + 
Sbjct: 242 HTALVGLLRLSDKFLVSAA 260

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 36/260 (13%), Positives = 65/260 (25%), Gaps = 8/260 (3%)

Query: 185 SNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIK 244
           ++  I+                                  +      ++  TGS D  + 
Sbjct: 62  AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 245 VWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS 304
           VW L                        +PY              +  +   V  GS D+
Sbjct: 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181

Query: 305 ESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS 364
              ++ +        L                    E    I+ S D TIR+WDL  G+ 
Sbjct: 182 TLIVWDVAQMKCLYIL------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 365 LCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNE 424
           + TL  H   V  +    +     SA+ D   +         +    H  +         
Sbjct: 236 MYTLQGHTALVGLL--RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 293

Query: 425 GVLVSGADNGTMCFWDWRTG 444
             ++          ++ R+G
Sbjct: 294 DNILVSGSENQFNIYNLRSG 313

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 73.0 bits (177), Expect = 7e-15
 Identities = 34/277 (12%), Positives = 65/277 (23%), Gaps = 7/277 (2%)

Query: 16  HVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHT 75
           +   V  LT    Y  H          P+     +       R+WD     +        
Sbjct: 41  YTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH------IL 94

Query: 76  NTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQ 135
            T   V +   +           +            FL     S  +          +  
Sbjct: 95  KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154

Query: 136 EQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKA 195
           +                 +F                   +       +   +        
Sbjct: 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 214

Query: 196 KALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL 255
               +   +             H G V  +   P     A+ SADK IK+W++AT K++ 
Sbjct: 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 274

Query: 256 SLTGHVG-SVRGLTVSPRHPYLFSCGDDRTVKCWDLE 291
           ++        + L +      L S   +  +   + E
Sbjct: 275 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 21/262 (8%), Positives = 63/262 (24%), Gaps = 30/262 (11%)

Query: 220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC 279
           G    +   P  +     +   +     + +       T H         SP   Y  S 
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASG 76

Query: 280 GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT 339
                V+ WD       ++         +  +++D+   R+      +    +       
Sbjct: 77  DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136

Query: 340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRS---------------------- 377
             +  +   +       +  +    + + ++                             
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196

Query: 378 -------VALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSG 430
                   A           +  +  +    E   ++N+    ++       +   + S 
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256

Query: 431 ADNGTMCFWDWRTGYNFQRLQV 452
           + + T+  W+  T    + + V
Sbjct: 257 SADKTIKIWNVATLKVEKTIPV 278

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (132), Expect = 4e-09
 Identities = 43/258 (16%), Positives = 75/258 (29%), Gaps = 30/258 (11%)

Query: 213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL--TGHVGSVRGLTVS 270
            + + H          P   + A+G     +++WD       L        G V+ ++  
Sbjct: 52  EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWD 111

Query: 271 PRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVK 330
                + + G+ R        ++              + S+ F  S    I + +D    
Sbjct: 112 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 171

Query: 331 LYKEDDSATE------------------ESHPVITGSHDCTIRLWDLAAGKSLCT----- 367
              E                        +     +   D TI L++   G          
Sbjct: 172 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS 231

Query: 368 --LTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC--VN 422
                H  SV  +   P     ASAS D  IK W     K  + +P    I +     + 
Sbjct: 232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291

Query: 423 NEGVLVSGADNGTMCFWD 440
            +  LVS + NG + F +
Sbjct: 292 TKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 12/109 (11%), Positives = 25/109 (22%), Gaps = 3/109 (2%)

Query: 349 SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN---IKQWKCPEGKF 405
            +  ++    + +       T H          P+ Y  AS        I          
Sbjct: 35  CNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 406 IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRC 454
              +P  +  +  I  ++E   ++    G   F                
Sbjct: 95  KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 68.2 bits (165), Expect = 4e-13
 Identities = 26/245 (10%), Positives = 62/245 (25%), Gaps = 20/245 (8%)

Query: 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLF-SCGDD 282
            A++ G+E+    +    + V D+A+  +  S             ++P +   +      
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 283 RTVKCWDLEYNK----APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA 338
             +   DL+  K    A +     +    ++S      G  +  T               
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND------ 115

Query: 339 TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQW 398
                          + ++  A G     +       +   +          +  +I + 
Sbjct: 116 -------HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKM 168

Query: 399 KCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGF 458
               GK+   LP  N          + +      +    F    T   F+  +    +  
Sbjct: 169 DVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD 227

Query: 459 PKPSV 463
                
Sbjct: 228 LLYGY 232

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 62.4 bits (150), Expect = 3e-11
 Identities = 27/264 (10%), Positives = 65/264 (24%), Gaps = 12/264 (4%)

Query: 200 MPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-- 257
           +   +      L  V       +   A+ P  +                     +L +  
Sbjct: 69  LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFS 128

Query: 258 --TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG----SMDSESGIFSM 311
              G           PR  YL    DD ++     +  K  V+ G    ++   +     
Sbjct: 129 TADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKG 188

Query: 312 TFDNSGSRL-ITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL-T 369
                               +        ++     T          DL  GK+      
Sbjct: 189 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA 248

Query: 370 NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLV 428
           +  +   +    P          + + ++   + K I+     +     +  + +G  L 
Sbjct: 249 DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLY 307

Query: 429 SGADNGTMCFWDWRTGYNFQRLQV 452
            G     +  ++  T    + +++
Sbjct: 308 LGGTFNDLAVFNPDTLEKVKNIKL 331

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 35/371 (9%), Positives = 82/371 (22%), Gaps = 64/371 (17%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTID-VLITAGRDSTARV 59
           V D+A+  +  S                         T  + P      +          
Sbjct: 22  VVDVASDTVYKSCVMPDKF---------------GPGTAMMAPDNRTAYVLNNHYGDIYG 66

Query: 60  WDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPS 119
            D+ T  N +     +           E      +  +    + ++        L+    
Sbjct: 67  IDLDTCKNTFHANLSSVP--------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDH-Y 117

Query: 120 LLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQL 179
           ++    +  +      E   +    + R     L+  +   +  +       +     + 
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQ--VYLMRAADDGSLYVAGPDIYKMDVKTGKY 175

Query: 180 VPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSA 239
                      +   A       P     W                  +   +  AT   
Sbjct: 176 TVALPLRNWNRKGYSA-------PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL 228

Query: 240 DKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ 298
                  DL TGK                  SP+ P       +  +  +DL+  K    
Sbjct: 229 LYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRK---L 284

Query: 299 PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWD 358
             + + +   + + FD  G +L                           G     + +++
Sbjct: 285 IKAANLDHTYYCVAFDKKGDKLYL-------------------------GGTFNDLAVFN 319

Query: 359 LAAGKSLCTLT 369
               + +  + 
Sbjct: 320 PDTLEKVKNIK 330

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.2 bits (139), Expect = 7e-10
 Identities = 32/328 (9%), Positives = 75/328 (22%), Gaps = 45/328 (13%)

Query: 39  ISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVV---------------- 82
            +L    + +I     +   V DV +     +                            
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 83  -----------TQASEPQVGTKTVLLESCERIMFVLGTAGFLLSC---LPSLLDFGTIRP 128
                             + +    +        +      + +       L D   ++P
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 129 WQLQIIQEQCFLNLQEVQRHSVH---TLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS 185
            +L++      L  + V+   +     L+  +   +  +       +     +       
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKV 245
                +   A       P     W                  +   +  AT         
Sbjct: 182 RNWNRKGYSA-------PDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 234

Query: 246 WDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDS 304
            DL TGK                  SP+ P       +  +  +DL+  K      + + 
Sbjct: 235 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-RLAKYDLKQRK---LIKAANL 290

Query: 305 ESGIFSMTFDNSGSRLITTEADKTVKLY 332
           +   + + FD  G +L        + ++
Sbjct: 291 DHTYYCVAFDKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 20/206 (9%), Positives = 45/206 (21%), Gaps = 44/206 (21%)

Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
           G  +   H Y+        +   D+  +    +   M  + G  +               
Sbjct: 1   GPALKAGHEYMIVTNYPNNLHVVDVASDT-VYKSCVMPDKFGPGTAMMAPDNRTA----- 54

Query: 326 DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN------HKKSVRSVA 379
                               +  +H   I   DL   K+              +S+ S A
Sbjct: 55  -------------------YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95

Query: 380 LHPTLYMFASASPDN-------------IKQWKCPEGKFIQNLPGHNAIINSICVNNEGV 426
           + P      +                  ++ +   +G   + +           +     
Sbjct: 96  ISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 155

Query: 427 LVSGADNGTMCFWDWRTGYNFQRLQV 452
                    +   D +TG     L +
Sbjct: 156 GSLYVAGPDIYKMDVKTGKYTVALPL 181

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 7/47 (14%), Positives = 16/47 (34%)

Query: 218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSV 264
                 CVA +   +    G     + V++  T +   ++    G +
Sbjct: 290 LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.6 bits (163), Expect = 5e-13
 Identities = 35/271 (12%), Positives = 66/271 (24%), Gaps = 6/271 (2%)

Query: 26  IRHYHGHLSS-VNTISLHPTID--VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVV 82
           +  + GH SS V T+   P      L +        VW         ++  +  +   V+
Sbjct: 55  VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVL 114

Query: 83  TQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNL 142
                                               SL +             +Q     
Sbjct: 115 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMR 174

Query: 143 QEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPK 202
                     + ++                 S    +  +  S   +I     + +    
Sbjct: 175 SMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234

Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
            +     K        +           ++ FAT  AD  I+VWD+ T K     T    
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 263 SVRGLTVS---PRHPYLFSCGDDRTVKCWDL 290
            +    V      +  + S   D T+  ++L
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 35/278 (12%), Positives = 70/278 (25%), Gaps = 43/278 (15%)

Query: 205 WHAPWKLYRVISGHLG-WVRCVAVEPGN--EWFATGSADKIIKVWDLATGKLKLSL---- 257
             +        +GH    V  V   P    ++  +G     + VW     K   S+    
Sbjct: 48  GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107

Query: 258 ----TGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSM 311
                   G +  ++     R   +   G D          +   +   S  S+      
Sbjct: 108 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS-WDSGNSLGEVSGHSQRINACH 166

Query: 312 TFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH 371
              +   R +T   D +V  Y+        S             +               
Sbjct: 167 LKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS 226

Query: 372 KKSVRSVALHPTLYM------------------------FASASPDN-IKQWKCPEGKFI 406
            + +         ++                        FA+   D  I+ W     K +
Sbjct: 227 DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV 286

Query: 407 QNLPGHNAIINSICV----NNEGVLVSGADNGTMCFWD 440
           Q        + +  V       G ++S + +GT+ F++
Sbjct: 287 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 2e-06
 Identities = 38/278 (13%), Positives = 67/278 (24%), Gaps = 41/278 (14%)

Query: 216 SGHLGWVRCVAVEPGNEWFATGSADK-IIKVWDLATGKLKL--SLTGHVGS-VRGLTVSP 271
           S    +   ++ +P     A        ++  D    K+      TGH  S V  +  SP
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 272 RHP--YLFSCGDDRTVKCWDLEYNKAPVQPGSMDS------ESGIFSMTFDNSGSRLITT 323
                YL S  +   V  W   ++K                   I  +++D  G RL   
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN------------- 370
              +          +      V   S          +      T+ +             
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 371 ----------HKKSVRSVALHPTLYMFASASPDNIKQ------WKCPEGKFIQNLPGHNA 414
                         VR V   P    F      + K                 +      
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 415 IINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQV 452
            I ++   +     +   + T+  WD  T    Q+  +
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 6e-04
 Identities = 40/334 (11%), Positives = 79/334 (23%), Gaps = 34/334 (10%)

Query: 34  SSVNTISLHPTIDVLITAGRDSTA-RVWDVRTKAN--VYTLTGHTNTIASVVTQASEPQV 90
           +    +S  PT + +      S   R  D        V   TGH +++ + V     P  
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV--KFSPIK 75

Query: 91  GTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQ-CFLNLQEVQRHS 149
           G++ +        + V G      S    +      +     I      F   +      
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 150 VHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPW 209
                   +       +          N      +   + +      ++   +       
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 210 KLYRVISGHLGWVRCVAVEP----GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
              R       +VR V   P          +               K        V    
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA 325
                       + G D T++ WD+  +K   +      + G   +    +G+  I    
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI---- 311

Query: 326 DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDL 359
                               I+ S D T+  ++L
Sbjct: 312 --------------------ISLSLDGTLNFYEL 325

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.1 bits (154), Expect = 8e-12
 Identities = 16/143 (11%), Positives = 38/143 (26%), Gaps = 4/143 (2%)

Query: 149 SVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAP 208
               L F     +    I      P+    +  +  S               P       
Sbjct: 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGD 265

Query: 209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           +++   +   +             ++       ++  +D+ T K    +T    ++  L 
Sbjct: 266 YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDLR 321

Query: 269 VSPRHPYLFSCGDDRTVKCWDLE 291
           +S     +    DD  +  + LE
Sbjct: 322 LSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 28/351 (7%), Positives = 64/351 (18%), Gaps = 51/351 (14%)

Query: 31  GHLSSVNTISLHPTIDVLITAGRDS--TARVWDVRTKANVYTLTGHTNTIASVVTQASEP 88
                +  +       V    G        ++D RT         +   + ++    +  
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGK 98

Query: 89  QVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNL----QE 144
                    E     +          S    + DF      +                  
Sbjct: 99  FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 158

Query: 145 VQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQ 204
              H       +    T +          +    L     S   +        L      
Sbjct: 159 QAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY--YLSYRSLDPSPDRVVLNFSFEV 216

Query: 205 WHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADK-------IIKVWDLATGKLKLSL 257
              P+ +        G      + P +     G  D             D    ++ + L
Sbjct: 217 VSKPFVI----PLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPL 272

Query: 258 TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSG 317
              +             Y     +   +  +D++  K             +  +      
Sbjct: 273 ESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADR 326

Query: 318 SRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL 368
             +                         +    D  I  + L   +   T+
Sbjct: 327 KTV-------------------------MVRKDDGKIYTFPLEKPEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.4 bits (121), Expect = 1e-07
 Identities = 16/252 (6%), Positives = 49/252 (19%), Gaps = 28/252 (11%)

Query: 199 PMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT 258
             P     +   +    +            P       G   + I V+D+   K+  + T
Sbjct: 117 GKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-T 175

Query: 259 GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD-----SESGIFSMTF 313
                            L+           D        +  S                 
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235

Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK 373
                                        + +       +    D    + +  L +   
Sbjct: 236 VPRSMTSEAG------------------EYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277

Query: 374 SVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD 432
                        +  A    +      + + +  +  +   +  + ++ +   ++   D
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKD 334

Query: 433 NGTMCFWDWRTG 444
           +G +  +     
Sbjct: 335 DGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 22/281 (7%), Positives = 54/281 (19%), Gaps = 38/281 (13%)

Query: 232 EWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD--RTVKCWD 289
           +  A  S  +   + D++   +          +R +         F  G      +  +D
Sbjct: 16  DLIAFVSRGQA-FIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYD 72

Query: 290 LEYNKA-PVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITG 348
               KA   +    +  +         +       E         +          +IT 
Sbjct: 73  YRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITD 132

Query: 349 -----------------------SHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY 385
                                       I ++D+   K     T       + A      
Sbjct: 133 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTENSHDYAPAFDADSK 191

Query: 386 MFASASPDN--------IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMC 437
                S  +        +  +          +P      N   +    +     +     
Sbjct: 192 NLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 251

Query: 438 FWDWRTGYNFQRLQVRCVSGFPKPSVFFFFLAFSYLNRVGV 478
            +   +  N      R +       + +             
Sbjct: 252 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 25/312 (8%), Positives = 65/312 (20%), Gaps = 38/312 (12%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTID-VLITAGRDSTARV 59
           V D     +   +T                    +     + P       T  +  +   
Sbjct: 15  VIDTEKMAVDKVITIA--------------DAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 60  WDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPS 119
            D+ T   +  +   T          +      KT+ +      + +             
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 120 LLDFGTIRPWQLQIIQEQC----------FLNLQEVQRHSVHTLVFRSLKRTHDMFISCQ 169
             +  + R       Q             +   +++             K          
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 170 ELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEP 229
                          S+  +          +      A       +    G +    V  
Sbjct: 181 AQPDVLAV--WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238

Query: 230 GNEWFATGSA----------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC 279
            + ++ + +             +++ +DL      +       S   + VS     ++  
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNAS-IKRVPLPHSYYSVNVSTDGSTVWLG 297

Query: 280 GDDRTVKCWDLE 291
           G    +  +D E
Sbjct: 298 GALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 18/227 (7%), Positives = 47/227 (20%), Gaps = 20/227 (8%)

Query: 232 EWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCW 288
           ++    +    + V D     +   +++     +     V+P     + +     ++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 289 DLEYNK---APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPV 345
           DL   +           +    +F       G  L   E+   ++L              
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT------------- 108

Query: 346 ITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKF 405
                   + L+D              + +  +A             D            
Sbjct: 109 HFEVQPTRVALYDAETLSRRKA-FEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

Query: 406 IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQV 452
                           +   V      +G M    +    +      
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADP 214

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 30/356 (8%), Positives = 81/356 (22%), Gaps = 51/356 (14%)

Query: 46  DVLITAGRDSTARVWDVRTKANVYTLT--GHTNTIASVVTQASEPQV-----GTKTVL-- 96
           D ++   R     V D    A    +T      T    +              +++++  
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 97  -LESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQE---QCFLNLQEVQRHSVHT 152
            L + E +  +  +                              +      +  R +++ 
Sbjct: 62  DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121

Query: 153 LVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQI------IQQAKAKALPMPKPQWH 206
               S ++  +       L  + +   +     +  +                     + 
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYA 181

Query: 207 APWKLYRVISG---HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS 263
            P  L          +            +     +    +   DL TG++ +     +  
Sbjct: 182 QPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241

Query: 264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT 323
               + +       + G    ++ +DLE N        +      +S+     GS +   
Sbjct: 242 FY-FSTAVNPAKTRAFGAYNVLESFDLEKNA---SIKRVPLPHSYYSVNVSTDGSTV--- 294

Query: 324 EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA 379
                                   G     +  +D    +    +     +  S+A
Sbjct: 295 ----------------------WLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 26/272 (9%), Positives = 50/272 (18%), Gaps = 7/272 (2%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
             DL TG+    +       R       +   LS            V +           
Sbjct: 60  KIDLVTGETLGRIDLSTPEERV---KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR 116

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLL---SCL 117
                A   +          +   A          L      +    GT        S  
Sbjct: 117 VALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWE 176

Query: 118 PSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTEN 177
                   +     Q              R  +      + +            +   E 
Sbjct: 177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236

Query: 178 QLVPTTASNTQIIQQAKAKALPMPKPQ-WHAPWKLYRVISGHLGWVRCVAVEPGNEWFAT 236
           +++     +T +              + +                   V V         
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL 296

Query: 237 GSADKIIKVWDLATGKLKLSLTGHVGSVRGLT 268
           G A   +  +D  T + K  +     +   L 
Sbjct: 297 GGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.8 bits (133), Expect = 5e-09
 Identities = 21/287 (7%), Positives = 50/287 (17%), Gaps = 62/287 (21%)

Query: 218 HLGWVRCVAVEPGNEWFA----------TGSADKIIKVWDLATGKLKLSLTGHVGSVRGL 267
              ++           FA           G     ++V+D  T      +         +
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 268 TVSPRHPYL--------FSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFS------MTF 313
                            F            +       Q     S   I           
Sbjct: 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHIHPGAAATHYLG 181

Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHP-------------VITGSHDCTIRLWDLA 360
               S   +  A             T   +              V   +          A
Sbjct: 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAA 241

Query: 361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPD--------------------NIKQWKC 400
                  +  ++   ++       +   +   +                    N      
Sbjct: 242 GATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301

Query: 401 PEGKFIQNLPGHNAIINSICVNNEG---VLVSGADNGTMCFWDWRTG 444
             G+    +   +   ++I    +G      + A    +  +D  + 
Sbjct: 302 SVGQTSGPISNGHD-SDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 18/296 (6%), Positives = 53/296 (17%), Gaps = 49/296 (16%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           V+D  T      +       R     R +     + +         +L      S A   
Sbjct: 100 VFDPVTFLPIADIELPDA-PRFSVGPRVHIIGNCASSAC-------LLFFLFGSSAAAGL 151

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
            V   ++       +                                  A   L      
Sbjct: 152 SVPGASDDQLTKSASCFHI-------------------------HPGAAATHYLGS---- 182

Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
                       +        +   Q         ++ +  +        +     + L 
Sbjct: 183 ---CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP----GMLVWAVASSILQ 235

Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
               +    ++ A        K           V          +     +      + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295

Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDDRTVKCWDLEYNK 294
                   + G+    ++        +  +         +      +  +D   ++
Sbjct: 296 --TSSVTASVGQTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 9/164 (5%), Positives = 35/164 (21%), Gaps = 9/164 (5%)

Query: 206 HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVR 265
            A     +         +              ++  +      A   +K ++ G+    +
Sbjct: 198 AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRK 257

Query: 266 GLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDN-SGSRLITTE 324
                     + +   +              V+       +   + +     G       
Sbjct: 258 ADNFRSAGFQMVAKLKNTDGIMI------LTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311

Query: 325 ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL 368
                       +    S      +    + ++D A+ +   ++
Sbjct: 312 NGHDS--DAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (129), Expect = 2e-08
 Identities = 26/173 (15%), Positives = 42/173 (24%), Gaps = 29/173 (16%)

Query: 226 AVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTV 285
             +  N +  T      I + D +T ++K  L     +V    +S    YLF  G D  V
Sbjct: 27  DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKV 85

Query: 286 KCWDLEYNKAPVQ---PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES 342
              DL   +           ++ S   S          I                     
Sbjct: 86  NMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAI--------------------- 124

Query: 343 HPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFA-SASPDN 394
                        + D    +     +    +      HP   + A  AS   
Sbjct: 125 ---AGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 174

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 26/230 (11%), Positives = 47/230 (20%), Gaps = 24/230 (10%)

Query: 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-----GHVGSVRGLTVSPRHPY 275
            V    +     +      D  + + DL   +                           Y
Sbjct: 63  AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKY 122

Query: 276 LF-SCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE 334
                         D E  + P +  S    +              I     +       
Sbjct: 123 AIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF---- 177

Query: 335 DDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT-NHKKSVRSVALHPTLYMFASASPD 393
                     ++       I L D     +L T   + ++ +    L  +   F +A+  
Sbjct: 178 ----------IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANA 227

Query: 394 NIKQWKCP--EGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDW 441
             K       EGK +          +     N      G    T    D 
Sbjct: 228 RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDD 277

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 19/182 (10%), Positives = 45/182 (24%), Gaps = 8/182 (4%)

Query: 204 QWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL--SLTGHV 261
                             +   A           +    I   DL++G  K   ++    
Sbjct: 179 GTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238

Query: 262 GSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLI 321
            + R     P      +           +   +   +  +      +       +G RL 
Sbjct: 239 EAERADGWRPGGWQQVAYHRALDRIYLLV-DQRDEWRHKTASRFVVVLDA---KTGERLA 294

Query: 322 TTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH 381
             E    +     + S  E+       + D T+ + D  +G+ L ++       + +   
Sbjct: 295 KFEMGHEI--DSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTA 352

Query: 382 PT 383
             
Sbjct: 353 DM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 7e-08
 Identities = 34/309 (11%), Positives = 74/309 (23%), Gaps = 27/309 (8%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           V D   G++   +    G +    V       ++  +T+        +    R     V+
Sbjct: 32  VIDGEAGRVIGMI--DGGFLPNPVV-ADDGSFIAHASTVF-----SRIARGERTDYVEVF 83

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLL-----ESCERIMFVLGTAGFLLS 115
           D  T      +         V T      +      L          +  V         
Sbjct: 84  DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKR 143

Query: 116 CLPSLLDFGTI---RPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELV 172
            L     +              ++     +      +             +  I+     
Sbjct: 144 MLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS 203

Query: 173 PSTENQLVPTTASNTQIIQQAKAKALPMPKPQWH--------APWKLYRVISGHLGWVRC 224
                 + PT       I  +   A  +P  +               ++ ++ H    R 
Sbjct: 204 QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI 263

Query: 225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP--RHPYLFSCGDD 282
             +    + +   +A + + V D  TG+           +  + VS   +         D
Sbjct: 264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGD 322

Query: 283 RTVKCWDLE 291
           +T+   D E
Sbjct: 323 KTLYIHDAE 331

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 28/282 (9%), Positives = 66/282 (23%), Gaps = 21/282 (7%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           V+D  T      +             R   G    + +++      +           V 
Sbjct: 82  VFDPVTLLPTADIELPDA-------PRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 134

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQV---GTKTVLLESCERIMFVLGTAGF----- 112
           D+  KA    L              +       G+   +    E    +  T  F     
Sbjct: 135 DLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 194

Query: 113 -LLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQEL 171
            L++        G +          Q  L+  + +       +  + +         Q++
Sbjct: 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254

Query: 172 VPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGN 231
                   +                A            +           +  + V    
Sbjct: 255 AYHRALDRIYLLVDQRDEW--RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDE 311

Query: 232 EW--FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSP 271
           +   +A  + DK + + D  +G+   S+       + +T + 
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 28/288 (9%), Positives = 70/288 (24%), Gaps = 64/288 (22%)

Query: 220 GWVRCVAVEPGNEWFAT----------GSADKIIKVWDLATGKLKLSLTGHVGSVRGLTV 269
           G++    V     + A           G     ++V+D  T      +         +  
Sbjct: 47  GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT 106

Query: 270 SPRHPYLFSCG--------------------DDRTVKCWDLEYNKAPVQPG-------SM 302
            P    L   G                         +  D+                   
Sbjct: 107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR 166

Query: 303 DSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG 362
           D      +   + +     T       +      + ++++  ++  ++   I   DL++G
Sbjct: 167 DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226

Query: 363 K--SLCTLTNHKKSVRSVALHPTLYMFASASPDN---------------------IKQWK 399
               L  +    ++ R+    P  +   +                          +    
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286

Query: 400 CPEGKFIQNLPGHNAIINSICVNNEG---VLVSGADNGTMCFWDWRTG 444
              G+ +      +  I+SI V+ +    +      + T+   D  +G
Sbjct: 287 AKTGERLAKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 22/225 (9%), Positives = 48/225 (21%), Gaps = 35/225 (15%)

Query: 235 ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRT 284
           A  +A     V D   G++   +    G +    V+    ++                  
Sbjct: 22  AHFAAVTQQFVIDGEAGRVIGMI--DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79

Query: 285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP 344
           V+ +D            ++       +         +               +   ++  
Sbjct: 80  VEVFDPVTLL---PTADIELPDAPRFLVGTYPWMTSL---------------TPDGKTLL 121

Query: 345 VITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFAS-----ASPDNIKQWK 399
               S    + + DL        L              T +M              +   
Sbjct: 122 FYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 181

Query: 400 CPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTG 444
                 + +      I +       G LV     G +   D  +G
Sbjct: 182 EITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 226

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 27/210 (12%), Positives = 58/210 (27%), Gaps = 5/210 (2%)

Query: 203 PQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVG 262
           P+    WK+  V        +   ++  N +  T      I + D  + K+   +     
Sbjct: 5   PEMRESWKVL-VKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-Y 62

Query: 263 SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ---PGSMDSESGIFSMTFDNSGSR 319
           +V    +S    YL   G D  +   DL   +          +++ S   S         
Sbjct: 63  AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY 122

Query: 320 LITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA 379
            I            + ++   +      G    T          ++     H + + +V 
Sbjct: 123 TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 182

Query: 380 LHPTLYMFASASPDNIKQWKCPEGKFIQNL 409
               + +      DN+         F+ + 
Sbjct: 183 ETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 42/384 (10%), Positives = 98/384 (25%), Gaps = 59/384 (15%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           + D  + K+   +                     +V+   +  +   L+  GRD+   + 
Sbjct: 46  LVDGDSKKIVKVIDTG-----------------YAVHISRMSASGRYLLVIGRDARIDMI 88

Query: 61  DVRTKAN--VYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLP 118
           D+  K    V  +       +   ++    +            +   + G        + 
Sbjct: 89  DLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS 148

Query: 119 -------SLLDFGTIRPWQL---QIIQEQCFLNLQEVQRHSVHTLVFRSLKRT---HDMF 165
                  +       R   +       E      +  +   V+     +L  T      F
Sbjct: 149 TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPF 208

Query: 166 ISCQELVPSTENQLVPTTASNTQIIQQAKAKAL--PMPKPQWHAPWKLYRVISGHLGWVR 223
           ++      S    +     SN   +  +K + L   +   +   P +    +    G V 
Sbjct: 209 LADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVW 268

Query: 224 CVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF------ 277
             +          G+  K    +     K    L G  G    +   P+  +L+      
Sbjct: 269 STSHLGDGSISLIGTDPKNHPQYA---WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFN 325

Query: 278 -SCGDDRTVKCWDLEYNKAPVQ-------PGSMDSESGIFSMTFDNSGSRLI-----TTE 324
                 ++V  +DL+   A  Q           +    +    ++  G  +         
Sbjct: 326 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKN 385

Query: 325 ADKTVKLYKEDDSATEESHPVITG 348
               + +    D  T +   V+  
Sbjct: 386 DSSALVVV---DDKTLKLKAVVKD 406

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 234 FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEY 292
           +   S    I V D+ + K+  ++     +  G  +SP    ++ +      V   D   
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63

Query: 293 N 293
           N
Sbjct: 64  N 64

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 28/265 (10%), Positives = 61/265 (23%), Gaps = 23/265 (8%)

Query: 209 WKLYRVISGHLGWVRCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL 267
            K+   I           + P G + +   +    + + D AT  +  ++          
Sbjct: 22  NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVA 80

Query: 268 TVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGI------------------F 309
                     +     T+   D   N       +  S  G+                   
Sbjct: 81  VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTV 140

Query: 310 SMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT 369
           S+    + + + T    ++ K        T+             I     +   ++    
Sbjct: 141 SVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200

Query: 370 NHKKSVRSVALHPTLYMFASASPDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VL 427
                  +               + +        K    +P        I V  +G  V 
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVY 259

Query: 428 VSGADNGTMCFWDWRTGYNFQRLQV 452
           V+ +   T+   D  T      + V
Sbjct: 260 VALSFCNTVSVIDTATNTITATMAV 284

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 32/312 (10%), Positives = 73/312 (23%), Gaps = 36/312 (11%)

Query: 1   VWDLATGKLKLSLTGHVGSVRGLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVW 60
           V D+ + K+  ++     +  G  +     G               V +     +   + 
Sbjct: 16  VIDVTSNKVTATIPVG-SNPMGAVI--SPDGTK-------------VYVANAHSNDVSII 59

Query: 61  DVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTAGFLLSCLPSL 120
           D  T   + T+   ++     V+   +                     T   + +   ++
Sbjct: 60  DTATNNVIATVPAGSSPQGVAVSPDGKQ-----------VYVTNMASSTLSVIDTTSNTV 108

Query: 121 LDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLV 180
                     L +        L           V  ++ +     +S          + +
Sbjct: 109 AGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSP-----KGI 163

Query: 181 PTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSAD 240
             T   T++                         +      +                  
Sbjct: 164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYF 223

Query: 241 KIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNK--APV 297
             + + D  T K+   +        G+ V+P    ++ +     TV   D   N   A +
Sbjct: 224 NTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282

Query: 298 QPGSMDSESGIF 309
             G     SG F
Sbjct: 283 AVGKNPYASGQF 294

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 30/322 (9%), Positives = 67/322 (20%), Gaps = 43/322 (13%)

Query: 47  VLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFV 106
             I         V DV +     T+   +N + +V++                    ++V
Sbjct: 4   AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDG---------------TKVYV 48

Query: 107 LGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFI 166
                  +S    ++D  T                        V+     S   +     
Sbjct: 49  ANAHSNDVS----IIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104

Query: 167 SCQELVPSTENQLVPTTASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVA 226
           S          +     A +    +              +   K            + +A
Sbjct: 105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA 164

Query: 227 VEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVK 286
           V P        + D +            +       +  G+ V+P     +    D+   
Sbjct: 165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFN 224

Query: 287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI 346
              +           +        +     G ++                         +
Sbjct: 225 TVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKV------------------------YV 260

Query: 347 TGSHDCTIRLWDLAAGKSLCTL 368
             S   T+ + D A      T+
Sbjct: 261 ALSFCNTVSVIDTATNTITATM 282

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 234 FATGSADKIIKVWDL-ATGKLKL-SLTGHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDL 290
           +      + I VW+L   G L L  +    G V+ + VSP   YL+     +  V  + +
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 291 EYNK-APVQPGSMDSESGIFSMTFDNSG 317
             +  A            +  ++ D+ G
Sbjct: 67  APDDGALTFAAESALPGSLTHISTDHQG 94

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 9e-04
 Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 7/123 (5%)

Query: 346 ITGSHDCTIRLWDLAAGKSLCTL--TNHKKSVRSVALHPT-LYMFASASPDN-IKQWKCP 401
           I       I +W+L    +L      +    V+ + + P   Y++    P+  +  ++  
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 402 EGKFIQNLPGHNAIINSIC---VNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVRCVSGF 458
                      +A+  S+     +++G  V             R         V  V G 
Sbjct: 68  PDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL 127

Query: 459 PKP 461
              
Sbjct: 128 DGC 130

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 32/282 (11%), Positives = 64/282 (22%), Gaps = 15/282 (5%)

Query: 22  GLTVIRHYHGHLSSVNTISLHPTIDVLITAGRDS-TARVWDVRTKANVYTLTGHTNTIAS 80
            LT+ +        V  + + P    L    R       + +       T    +    S
Sbjct: 26  ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 84

Query: 81  VVTQASEP--------QVGTKTVLLESCERIMFVLGTAGFLLSCLPSLLDFGTIRPWQLQ 132
           +   +++               V +   E  + V               +          
Sbjct: 85  LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV 144

Query: 133 IIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQIIQQ 192
              +Q  + L  V           +   T +       +V     Q           +  
Sbjct: 145 PALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-MVFHPNEQYAYCVNELNSSVDV 203

Query: 193 AKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK 252
            + K              +    S             G   +A      +I V+ ++   
Sbjct: 204 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDG 263

Query: 253 LKLSLTGHV---GSVRGLTVSPRHPYLFSCG-DDRTVKCWDL 290
             LS  G        RG  V     YL + G     +  +++
Sbjct: 264 SVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI 305

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 20/186 (10%), Positives = 47/186 (25%), Gaps = 5/186 (2%)

Query: 221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG 280
           ++  +A  P    F T      I       G  ++      G V GL  +     + +  
Sbjct: 29  FLENLASAPDGTIFVTNHEVGEIVSIT-PDGNQQI-HATVEGKVSGLAFTSNGDLVATGW 86

Query: 281 DDRTVKCWDLEYNKAPVQPGSMDSESGIF-SMTFDNSGSRLITTEADKTVKLYKEDDSAT 339
           +  ++    L  +   V+      ++     +T  +    L        + L      + 
Sbjct: 87  NADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG 146

Query: 340 EESHPVITGSHDCTIRLWDLAAGKSLC--TLTNHKKSVRSVALHPTLYMFASASPDNIKQ 397
                    +   +  ++  A G       L         +   P         P+   +
Sbjct: 147 SIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE 206

Query: 398 WKCPEG 403
               + 
Sbjct: 207 QTNIDD 212

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 28/282 (9%), Positives = 66/282 (23%), Gaps = 59/282 (20%)

Query: 212 YRVISGHLGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTV 269
           Y     H   +         ++ F    A+  +    L   K        +V ++ GL +
Sbjct: 64  YLNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRL 123

Query: 270 SP--RHPYLFSCGDDRTVKCWD---LEYNKA-----PVQPGSMDSE------SGIFSMTF 313
               +  Y+F   +    +  D      + +      +   +MD          + +   
Sbjct: 124 QKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDA 183

Query: 314 DNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC-----------------TIRL 356
           D +G    +T  + + +      +   +   V+  + +                     +
Sbjct: 184 DYTGKYATSTCYN-SERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV 242

Query: 357 WDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNI-------KQWKCPEGKF---- 405
                 +    +   K            Y  A+             K     E K     
Sbjct: 243 DGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRD 302

Query: 406 -------IQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWD 440
                  +   P H                +   +  +C W+
Sbjct: 303 TIVAEPELGLGPLHTTFDGRGN-----AYTTLFIDSQVCKWN 339

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.98
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.93
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.76
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.71
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.64
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.41
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.1
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.9
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.87
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.74
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.69
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.58
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.56
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.49
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.45
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.34
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.3
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.2
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	97.82
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.72
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	97.7
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.68
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.62
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.36
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.35
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.19
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.09
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.95
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	95.59
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.46
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.2
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	93.81
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.46
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	90.98
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.13
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	89.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	88.97
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	88.53
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.41
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	83.02
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	81.18

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-40  Score=311.07  Aligned_cols=304  Identities=26%  Similarity=0.450  Sum_probs=243.8

Q ss_pred             ecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          28 HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      +++||+++|++|+|+|++++|||||.||+|||||+++++.+.++.+|...|.++.+.++....     .          .
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~-----~----------~   76 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL-----A----------S   76 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEE-----E----------E
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccc-----c----------c
Confidence            467899999999999999999999999999999999999999999999999999886643210     0          0


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                      .            ...+.+..|+..                                                       
T Consensus        77 ~------------~~~~~~~~~~~~-------------------------------------------------------   89 (317)
T d1vyhc1          77 C------------SADMTIKLWDFQ-------------------------------------------------------   89 (317)
T ss_dssp             E------------ETTSCCCEEETT-------------------------------------------------------
T ss_pred             c------------cccccccccccc-------------------------------------------------------
Confidence            0            000111111000                                                       


Q ss_pred             hHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEE
Q psy8895         188 QIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGL  267 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v  267 (479)
                                          ..+....+.+|...+.++.++|+++.+++++.|+.+++||+++++....+.+|...+.++
T Consensus        90 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (317)
T d1vyhc1          90 --------------------GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV  149 (317)
T ss_dssp             --------------------SSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             --------------------ccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceee
Confidence                                001112345688899999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEE
Q psy8895         268 TVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVIT  347 (479)
Q Consensus       268 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~s  347 (479)
                      ++++++.++++++.|+.+++|++.........  ..+...+.++.+.|+..........+.....     .......+++
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  222 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRHVVECISWAPESSYSSISEATGSETKK-----SGKPGPFLLS  222 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC------------CCEEEE
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEE--ecCCCCceEEEEeeccccceeeccccceeee-----eccCCceeEe
Confidence            99999999999999999999999876544322  2345678888888865433222222211111     1123457899


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      ++.|+.|++||+++++++.++.+|...|++++++|++.+|++++.|+ |++||+.+++++..+.+|...|++++|+|++ 
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~  302 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP  302 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSS
T ss_pred             ccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999998888775 9999999999999999999999999999998 


Q ss_pred             EEEEEeCCCcEEEEe
Q psy8895         426 VLVSGADNGTMCFWD  440 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd  440 (479)
                      +|+||+.||+|+|||
T Consensus       303 ~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         303 YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEETTSEEEEEC
T ss_pred             EEEEEeCCCeEEEeC
Confidence            899999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-37  Score=292.43  Aligned_cols=221  Identities=20%  Similarity=0.354  Sum_probs=192.9

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      +|.+.|.+++|+|+|++|++|+.|+.|++||+...  +....+..|...+..++++|++.++++++.|+.+++||+++.+
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~  174 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            58889999999999999999999999999998754  4566788999999999999999999999999999999998765


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC----------------CCCCCeEEEEeCCCcEEEEE
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA----------------TEESHPVITGSHDCTIRLWD  358 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~----------------~~~~~~l~sgs~d~~v~iwd  358 (479)
                      .....  ..+...+.++.|++++..+++++.|+.+++|+.....                .+....+++|+.|+.+++||
T Consensus       175 ~~~~~--~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d  252 (337)
T d1gxra_         175 LVRQF--QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLH  252 (337)
T ss_dssp             EEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccc--cccccccccccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccc
Confidence            44332  2456789999999999999999999999999986542                13456789999999999999


Q ss_pred             CCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcE
Q psy8895         359 LAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTM  436 (479)
Q Consensus       359 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i  436 (479)
                      ++.++.. ....|...|++++|+|++.+|++++.|+ |++||..+++.+..+. |...|.+++|+|++ +|++|+.||+|
T Consensus       253 ~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I  330 (337)
T d1gxra_         253 VNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             TTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             ccccccc-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeE
Confidence            9987765 4567999999999999999999988875 9999999999887654 67889999999998 89999999999


Q ss_pred             EEEec
Q psy8895         437 CFWDW  441 (479)
Q Consensus       437 ~lWd~  441 (479)
                      +|||+
T Consensus       331 ~vWdl  335 (337)
T d1gxra_         331 TVYEV  335 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-37  Score=296.90  Aligned_cols=223  Identities=26%  Similarity=0.499  Sum_probs=187.5

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      +|...|.+++|+|+|++|++|+.|+.|++||...++....+.+|...|.++++++++..+++++.++.+++||.+.....
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccc
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999866543


Q ss_pred             cCCCCCCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEeCCCCC------------------------CCCCCeEEEEeCC
Q psy8895         297 VQPGSMDSESGIFSMTFD-NSGSRLITTEADKTVKLYKEDDSA------------------------TEESHPVITGSHD  351 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~------------------------~~~~~~l~sgs~d  351 (479)
                      ...   .......++.+. +++..+++++.|+.+++|+.....                        .++...+++|+.|
T Consensus       199 ~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         199 LTL---SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEE---ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccc---ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECC
Confidence            322   122334455555 477899999999999999976432                        1234678999999


Q ss_pred             CcEEEEECCCCe------------eEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEE
Q psy8895         352 CTIRLWDLAAGK------------SLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINS  418 (479)
Q Consensus       352 ~~v~iwd~~~~~------------~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~  418 (479)
                      ++|++||+..++            .......|...|.+++|+|++.+|++++.|+ |++||..+++++..+++|.+.|.+
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~  355 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS  355 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEE
Confidence            999999997643            2344557889999999999999999998875 999999999999999999999999


Q ss_pred             EEE------cCCC-EEEEEeCCCcEEEEecC
Q psy8895         419 ICV------NNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       419 l~~------~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      +++      +|++ +|+||+.||+|+|||++
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            975      4677 89999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-34  Score=271.98  Aligned_cols=291  Identities=23%  Similarity=0.381  Sum_probs=231.7

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ...++++||+++|++|+|+|++++|||||.||+|+|||+.+++.+.++.+|...|.++.|.++...     +.       
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~-----l~-------  113 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY-----VA-------  113 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSE-----EE-------
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeecccee-----ee-------
Confidence            456789999999999999999999999999999999999999999999999999999998765432     11       


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                         .            ...++.++.|+....                                                 
T Consensus       114 ---~------------~~~d~~i~~~~~~~~-------------------------------------------------  129 (340)
T d1tbga_         114 ---C------------GGLDNICSIYNLKTR-------------------------------------------------  129 (340)
T ss_dssp             ---E------------EETTCCEEEEESSSS-------------------------------------------------
T ss_pred             ---e------------ecccceeeccccccc-------------------------------------------------
Confidence               0            011223333321100                                                 


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                                            ....+....+.+|.....+.... .+..+.....|.....|.............+...
T Consensus       130 ----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (340)
T d1tbga_         130 ----------------------EGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGD  186 (340)
T ss_dssp             ----------------------CSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC
T ss_pred             ----------------------ccccccceecccccccccccccc-ccccccccccccccccccccccccccccccccee
Confidence                                  00011223455676666665554 4567888889999999999888887788888889


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      +....+.+...++++++.|+.|++||+++.+.....  ..+...|.+++|+|++..+                       
T Consensus       187 ~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~--~~h~~~i~~v~~~p~~~~l-----------------------  241 (340)
T d1tbga_         187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF--TGHESDINAICFFPNGNAF-----------------------  241 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEE-----------------------
T ss_pred             EeeeccccccceeEEeecCceEEEEECCCCcEEEEE--eCCCCCeEEEEECCCCCEE-----------------------
Confidence            999999999999999999999999999876654332  2456789999999887665                       


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEEEEc--cCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLCTLT--NHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                        ++|+.|+.|++||++..+.+..+.  .+...|++++|+|++.+|++++.|+ |++||..+++.+..+.+|.+.|++++
T Consensus       242 --~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~  319 (340)
T d1tbga_         242 --ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG  319 (340)
T ss_dssp             --EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred             --EEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence              556667778888888777766653  5667899999999999999988775 99999999999999999999999999


Q ss_pred             EcCCC-EEEEEeCCCcEEEEe
Q psy8895         421 VNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      |+|++ +|+||+.||+|+|||
T Consensus       320 ~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         320 VTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSSCEEEEETTSCEEEEC
T ss_pred             EeCCCCEEEEEccCCEEEEeC
Confidence            99998 899999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5e-35  Score=281.37  Aligned_cols=286  Identities=19%  Similarity=0.225  Sum_probs=216.2

Q ss_pred             ccceEEEEEccCCceEEEecCCCeEEEEeecccc--eEeeecccccceEEEEecCCCCccccceEEeccccEEEEeeccc
Q psy8895          33 LSSVNTISLHPTIDVLITAGRDSTARVWDVRTKA--NVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVLGTA  110 (479)
Q Consensus        33 ~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (479)
                      ..||+|++|+|||++||+|+.|+.|+|||+++++  .+.++++|.+.|.++.|+++...     ++              
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~-----l~--------------   67 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR-----IV--------------   67 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTE-----EE--------------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCE-----EE--------------
Confidence            4789999999999999999999999999998775  67788999999999999875432     11              


Q ss_pred             CceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCchhHH
Q psy8895         111 GFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNTQII  190 (479)
Q Consensus       111 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  190 (479)
                              +...++++++|++...+                                                       
T Consensus        68 --------s~s~D~~i~vWd~~~~~-------------------------------------------------------   84 (371)
T d1k8kc_          68 --------TCGTDRNAYVWTLKGRT-------------------------------------------------------   84 (371)
T ss_dssp             --------EEETTSCEEEEEEETTE-------------------------------------------------------
T ss_pred             --------EEECCCeEEEEeecccc-------------------------------------------------------
Confidence                    12245678888653110                                                       


Q ss_pred             HHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce----EEEEecCCcCEEE
Q psy8895         191 QQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL----KLSLTGHVGSVRG  266 (479)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~----~~~~~~h~~~v~~  266 (479)
                                        ++....+.+|...|.+++|+|++++|++|+.|+++++|++.....    .....+|...|.+
T Consensus        85 ------------------~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  146 (371)
T d1k8kc_          85 ------------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLS  146 (371)
T ss_dssp             ------------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEE
T ss_pred             ------------------cccccccccccccccccccccccccceeecccCcceeeeeeccccccccccccccccccccc
Confidence                              001113456888999999999999999999999999999876543    2345678899999


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcccCC----------------CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Q psy8895         267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP----------------GSMDSESGIFSMTFDNSGSRLITTEADKTVK  330 (479)
Q Consensus       267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  330 (479)
                      ++|+|++.++++|+.|+++++||..........                ....+...+.+++|+|+++.           
T Consensus       147 v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~-----------  215 (371)
T d1k8kc_         147 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR-----------  215 (371)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE-----------
T ss_pred             ccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc-----------
Confidence            999999999999999999999998643321100                00123344666666666554           


Q ss_pred             EEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCcEEEE--eCCCCeEEe-
Q psy8895         331 LYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDNIKQW--KCPEGKFIQ-  407 (479)
Q Consensus       331 ~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w--~~~~~~~~~-  407 (479)
                                    +++++.|++|++||+..++.+.++..|..+|.+++|+|++.++++++++.+.+|  +...+.... 
T Consensus       216 --------------l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         216 --------------VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             --------------EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEEC
T ss_pred             --------------ccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEe
Confidence                          567778888999999999999999999999999999999999999998875554  433222110 


Q ss_pred             --------------------------------------eecCCcceEEEEEEcCCC-----EEEEEeCCCcEEEEecCC
Q psy8895         408 --------------------------------------NLPGHNAIINSICVNNEG-----VLVSGADNGTMCFWDWRT  443 (479)
Q Consensus       408 --------------------------------------~~~~h~~~v~~l~~~~~~-----~l~sg~~dg~i~lWd~~~  443 (479)
                                                            ....|.+.|+++++.+++     .++|+|.||+|++||+++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             eeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                                  001388889999886432     589999999999999875

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.9e-35  Score=273.31  Aligned_cols=199  Identities=24%  Similarity=0.278  Sum_probs=159.9

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEECCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-LFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~  292 (479)
                      .+|.+.|.+++|+|++++|++++.  +..+++|++++++....+.+|...|.+++|+|++++ +++|+.|+.|++||+++
T Consensus        99 ~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~  178 (311)
T d1nr0a1          99 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP  178 (311)
T ss_dssp             ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT
T ss_pred             ccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence            357788999999999999999986  456999999999998899999999999999999885 77899999999999987


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE----
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL----  368 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~----  368 (479)
                      .+.....  ..+...|.++.++|+++.++++                         +.|+.|++||+..++.+..+    
T Consensus       179 ~~~~~~~--~~~~~~i~~v~~~p~~~~l~~~-------------------------~~d~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         179 FKFKSTF--GEHTKFVHSVRYNPDGSLFAST-------------------------GGDGTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             BEEEEEE--CCCSSCEEEEEECTTSSEEEEE-------------------------ETTSCEEEEETTTCCEEEECBCTT
T ss_pred             ccccccc--ccccccccccccCccccccccc-------------------------cccccccccccccccccccccccc
Confidence            6544322  2456779999999988776554                         45555666666665555444    


Q ss_pred             ---ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc---eEEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         369 ---TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNA---IINSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       369 ---~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~---~v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                         .+|...|++++|+|++.+|++++.|+ |++||..++++++++..|..   .+.++.++++ .|++++.||.|++||.
T Consensus       232 ~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         232 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ-ALVSISANGFINFVNP  310 (311)
T ss_dssp             SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS-CEEEEETTCCEEEEET
T ss_pred             cccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCC-EEEEEECCCEEEEEeC
Confidence               35888999999999999999998875 99999999999999887643   3444444433 6888999999999996


Q ss_pred             C
Q psy8895         442 R  442 (479)
Q Consensus       442 ~  442 (479)
                      +
T Consensus       311 d  311 (311)
T d1nr0a1         311 E  311 (311)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.7e-34  Score=265.56  Aligned_cols=287  Identities=17%  Similarity=0.196  Sum_probs=208.6

Q ss_pred             EeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeec-ccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          25 VIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLT-GHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        25 ~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      +.+.+.||.++|++|+|+|+|++|||||.||+|++||+++++.+.++. +|...|.++.|.++..               
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~---------------   68 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD---------------   68 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC---------------
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce---------------
Confidence            456788999999999999999999999999999999999999988885 7999999999876431               


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                      +++.+             .++.++.|+.....                                       ..       
T Consensus        69 ~~~~~-------------~d~~v~~~~~~~~~---------------------------------------~~-------   89 (299)
T d1nr0a2          69 LFTVS-------------WDDHLKVVPAGGSG---------------------------------------VD-------   89 (299)
T ss_dssp             EEEEE-------------TTTEEEEECSSSSS---------------------------------------SC-------
T ss_pred             eeccc-------------ceeeEEEeccCCcc---------------------------------------cc-------
Confidence            11111             12344444321100                                       00       


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                         .                     .  ......|...+.+++++|+++++++++ ++.+++|+...  .....  ....
T Consensus        90 ---~---------------------~--~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~  138 (299)
T d1nr0a2          90 ---S---------------------S--KAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYN  138 (299)
T ss_dssp             ---T---------------------T--SCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSC
T ss_pred             ---c---------------------c--ccccccccccccccccccccccccccc-ccccccccccc--ccccc--cccc
Confidence               0                     0  001224567788999999999877766 46899998543  32222  3346


Q ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESH  343 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  343 (479)
                      +.+++|+|++.++++++.|+.|++||+++...... ....+...|.++.|+|++.+++                      
T Consensus       139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~----------------------  195 (299)
T d1nr0a2         139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV-KTIVHPAEITSVAFSNNGAFLV----------------------  195 (299)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE-EEEECSSCEEEEEECTTSSEEE----------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc----------------------
Confidence            78999999999999999999999999976543211 1123456788999988877655                      


Q ss_pred             eEEEEeCCCcEEEEECCCCeeE---EEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEE--eeecC-CcceE
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSL---CTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFI--QNLPG-HNAII  416 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~---~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~--~~~~~-h~~~v  416 (479)
                         +++.|+.|++||+.++...   ..+.+|...|++++|+|++.+|++++.|+ |++||+.++...  ..... +...|
T Consensus       196 ---~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v  272 (299)
T d1nr0a2         196 ---ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSV  272 (299)
T ss_dssp             ---EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCE
T ss_pred             ---ccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcE
Confidence               4555666667776655443   34567899999999999999999998875 999999876432  22333 45678


Q ss_pred             EEEEEcCCCEEEEEeCCCcEEEEecC
Q psy8895         417 NSICVNNEGVLVSGADNGTMCFWDWR  442 (479)
Q Consensus       417 ~~l~~~~~~~l~sg~~dg~i~lWd~~  442 (479)
                      .++++.++.+|++|+.|++|++||+.
T Consensus       273 ~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         273 NSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EEEEECCCCEEEEEeCCCEEEEEecc
Confidence            88887777799999999999999973

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-33  Score=260.36  Aligned_cols=212  Identities=19%  Similarity=0.282  Sum_probs=182.2

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce--EEEEecCCcCEEEEEEcCCCCEEEEEEC--CCcEEEEEC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL--KLSLTGHVGSVRGLTVSPRHPYLFSCGD--DRTVKCWDL  290 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~l~s~~~--d~~i~~wd~  290 (479)
                      +.+|.+.|++++|+|+|++|++|+.|++|+|||+.++..  ...+.+|..+|.+++|+|+++++++++.  +..+++|++
T Consensus        54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~  133 (311)
T d1nr0a1          54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLF  133 (311)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEET
T ss_pred             EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccc
Confidence            346888899999999999999999999999999988764  3568899999999999999999999875  467999999


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      ++.+.....  ..+...|.++.|+|++..+                        +++|+.|++|++||+++++....+..
T Consensus       134 ~~~~~~~~l--~~h~~~v~~v~~~~~~~~~------------------------l~sgs~d~~i~i~d~~~~~~~~~~~~  187 (311)
T d1nr0a1         134 DTGTSNGNL--TGQARAMNSVDFKPSRPFR------------------------IISGSDDNTVAIFEGPPFKFKSTFGE  187 (311)
T ss_dssp             TTCCBCBCC--CCCSSCEEEEEECSSSSCE------------------------EEEEETTSCEEEEETTTBEEEEEECC
T ss_pred             ccccccccc--cccccccccccccccceee------------------------eccccccccccccccccccccccccc
Confidence            876654332  3456779999999876542                        56788899999999999999999999


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeee-------cCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         371 HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNL-------PGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~-------~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      |...|+++.++|++.++++++.| .+++||..+++....+       .+|.+.|++++|+|++ +|++|+.||+|+|||+
T Consensus       188 ~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~  267 (311)
T d1nr0a1         188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV  267 (311)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEEC
Confidence            99999999999999999988876 5999999988776654       3688999999999998 9999999999999999


Q ss_pred             CCCeEEEEEEE
Q psy8895         442 RTGYNFQRLQV  452 (479)
Q Consensus       442 ~~~~~~~~~~~  452 (479)
                      +++.+++.++.
T Consensus       268 ~t~~~~~~l~~  278 (311)
T d1nr0a1         268 ATLKVEKTIPV  278 (311)
T ss_dssp             TTTEEEEEEEC
T ss_pred             CCCcEEEEEEC
Confidence            99998887654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-32  Score=260.87  Aligned_cols=306  Identities=20%  Similarity=0.286  Sum_probs=226.1

Q ss_pred             eecCCcccce-EEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEE
Q psy8895          27 RHYHGHLSSV-NTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMF  105 (479)
Q Consensus        27 ~~~~gH~~~V-~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (479)
                      .+++||.+.| +|++|  ++++|||||.||+|+|||+.+++.+.++.+|++.|.++.|.++.      .++         
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~------~l~---------   68 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG------ILV---------   68 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT------EEE---------
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC------EEE---------
Confidence            3567898876 56554  67999999999999999999999999999999999999986531      111         


Q ss_pred             eecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCC
Q psy8895         106 VLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTAS  185 (479)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  185 (479)
                                   +...++.+++|+....+..             .                                  
T Consensus        69 -------------s~s~D~~i~iw~~~~~~~~-------------~----------------------------------   88 (355)
T d1nexb2          69 -------------SGSTDRTVRVWDIKKGCCT-------------H----------------------------------   88 (355)
T ss_dssp             -------------EEETTCCEEEEETTTTEEE-------------E----------------------------------
T ss_pred             -------------EEecccccccccccccccc-------------c----------------------------------
Confidence                         1234567777765321000             0                                  


Q ss_pred             chhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEE----------
Q psy8895         186 NTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKL----------  255 (479)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~----------  255 (479)
                                                ......+........+.++++++++++.|+.|++||+.+.....          
T Consensus        89 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  142 (355)
T d1nexb2          89 --------------------------VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL  142 (355)
T ss_dssp             --------------------------EECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCE
T ss_pred             --------------------------ccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceecc
Confidence                                      00001122334556677899999999999999999998654322          


Q ss_pred             -------------EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEE
Q psy8895         256 -------------SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLIT  322 (479)
Q Consensus       256 -------------~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  322 (479)
                                   ....|...+..  +.+++..++++..|+.+++||+++.+.....  ......+.++.+++.+..+++
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  218 (355)
T d1nexb2         143 VFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKRCIS  218 (355)
T ss_dssp             EESCTTTCTTEEEEEECCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTEEEE
T ss_pred             ceeccccccceeeeeeeccccccc--cccccceeeeecccceeeeeecccccceeee--eccccccccccccccceeeec
Confidence                         22334444443  4456779999999999999999876544322  234567889999999999999


Q ss_pred             EeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEE-EEeCCCcE
Q psy8895         323 TEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSV-ALHPTLYM  386 (479)
Q Consensus       323 ~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i-~~~~~~~~  386 (479)
                      ++.|+.+++|+......               .....+++|+.|++|++||+++.....  ..|...+.++ .+++++.+
T Consensus       219 ~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~  296 (355)
T d1nexb2         219 ASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYVSDNI  296 (355)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSSCCCEEEECSSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEECSSE
T ss_pred             ccccceEEeeeccccccccccccccccccccccccceeeeeecccccccccccccceec--ccccCCceEEEEEcCCCCE
Confidence            99999999999765421               124678999999999999999876544  3455555555 56788999


Q ss_pred             EEEEcCCcEEEEeCCCCeEEe-eecCCcceEEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         387 FASASPDNIKQWKCPEGKFIQ-NLPGHNAIINSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       387 l~s~s~d~i~~w~~~~~~~~~-~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                      +++++++.|++||+.++++++ .+.+|...|.+++++|+..+++++.||+++||.+
T Consensus       297 l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             EEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred             EEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEE
Confidence            999998889999999999885 4678999999999999888899999999766643

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-31  Score=249.56  Aligned_cols=238  Identities=26%  Similarity=0.476  Sum_probs=211.3

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ..|.||.+.|++++|+|++++|+||+.|++|+|||+.+++.+.++.+|...|.+++++|++.++++++.++.+..|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeCCCcEE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSHDCTIR  355 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~d~~v~  355 (479)
                      .+.....  ..+...+.++.+.+++..+++++.|+.+++|+.....                 .++...+++++.|+.|+
T Consensus        91 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 FECIRTM--HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  168 (317)
T ss_dssp             SCEEECC--CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             ccccccc--ccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEE
Confidence            5443322  3456778999999999999999999999999976532                 13456799999999999


Q ss_pred             EEECCCCeeEEEEccCCCceEEEEEeCCC--------------------cEEEEEcCC-cEEEEeCCCCeEEeeecCCcc
Q psy8895         356 LWDLAAGKSLCTLTNHKKSVRSVALHPTL--------------------YMFASASPD-NIKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       356 iwd~~~~~~~~~~~~h~~~v~~i~~~~~~--------------------~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~  414 (479)
                      +|++.+++.+..+.+|...+.+++++|+.                    ..+++++.| .+++|+..+++.+.++.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            99999999999999999999999998764                    356666666 599999999999999999999


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      .|.+++++|++ +|++|+.||.|++||+++++.++.++.
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence            99999999998 899999999999999999988877653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-31  Score=246.81  Aligned_cols=315  Identities=25%  Similarity=0.404  Sum_probs=197.0

Q ss_pred             ecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEEEEee
Q psy8895          28 HYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERIMFVL  107 (479)
Q Consensus        28 ~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (479)
                      .++||+++|.+ +++++|++|||||.||+|||||+.+++.+.++.+|.+.|.++.+.+.       .++           
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~-------~l~-----------   71 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN-------III-----------   71 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT-------EEE-----------
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC-------ccc-----------
Confidence            45667777755 46778999999999999999999999999999999999999987542       111           


Q ss_pred             cccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCCCCch
Q psy8895         108 GTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTTASNT  187 (479)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  187 (479)
                                 +...++.++.|+...........   .....+....                   ..............
T Consensus        72 -----------s~s~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-------------------~~~~~~~~~~~d~~  118 (342)
T d2ovrb2          72 -----------SGSTDRTLKVWNAETGECIHTLY---GHTSTVRCMH-------------------LHEKRVVSGSRDAT  118 (342)
T ss_dssp             -----------EEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEE-------------------EETTEEEEEETTSE
T ss_pred             -----------cceecccccccccccccceeccc---ccceeEeeee-------------------ccccccccccccee
Confidence                       11234556666543211000000   0000000000                   00000000000000


Q ss_pred             hHHHHHhHhcCCCCCCCC-CCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEE
Q psy8895         188 QIIQQAKAKALPMPKPQW-HAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRG  266 (479)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~  266 (479)
                       +.             .| ....+....+..+.....  ...+....++.++.|+.|++||......+..+.+|...+..
T Consensus       119 -i~-------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~  182 (342)
T d2ovrb2         119 -LR-------------VWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS  182 (342)
T ss_dssp             -EE-------------EEESSSCCEEEEEECCSSCEE--EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE
T ss_pred             -EE-------------Eeecccccceeeeecccccce--eeccccceeeeecCCCeEEEeecccceeeEEEcCccccccc
Confidence             00             00 012333333333333222  23345677777777777777777777777777777666555


Q ss_pred             EEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEE
Q psy8895         267 LTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVI  346 (479)
Q Consensus       267 v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~  346 (479)
                      ..+  ++.++++++.|+.|++||++..+.....  ..+...+.++.++                           ...++
T Consensus       183 ~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~--~~~~~~v~~~~~~---------------------------~~~l~  231 (342)
T d2ovrb2         183 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL--TGHQSLTSGMELK---------------------------DNILV  231 (342)
T ss_dssp             EEE--CSSEEEEEETTSCEEEEETTTCCEEEEE--CCCCSCEEEEEEE---------------------------TTEEE
T ss_pred             ccC--CCCEEEEEeCCCeEEEeecccceeeeEe--cccccceeEEecC---------------------------CCEEE
Confidence            444  4567777777777777777655443322  1223334443332                           23578


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEcc---CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeec-----CCcceEE
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLTN---HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLP-----GHNAIIN  417 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~~---h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~-----~h~~~v~  417 (479)
                      +|+.|++|++||+...+....+..   |...+.++.+++  .++++++.| .|++||+.+++.++.+.     +|.+.|+
T Consensus       232 s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~  309 (342)
T d2ovrb2         232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW  309 (342)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEE
T ss_pred             EEcCCCEEEEEecccccccccccccceeeeceeecccCC--CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEE
Confidence            888999999999998888777764   556777777764  577787777 49999999999887763     5788999


Q ss_pred             EEEEcCCC-EEEEEeCCCc----EEEEecCC
Q psy8895         418 SICVNNEG-VLVSGADNGT----MCFWDWRT  443 (479)
Q Consensus       418 ~l~~~~~~-~l~sg~~dg~----i~lWd~~~  443 (479)
                      +++++|++ +|++|+.||+    |++||++.
T Consensus       310 ~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         310 RIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999 7899999986    99999874

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-31  Score=252.04  Aligned_cols=202  Identities=17%  Similarity=0.211  Sum_probs=162.6

Q ss_pred             cCCCccEEEEEEcCCCcEEEEEeC--CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCE-EEEEECCCcEEEEECCC
Q psy8895         216 SGHLGWVRCVAVEPGNEWFATGSA--DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPY-LFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       216 ~~h~~~v~~~~~~~~g~~l~sgs~--d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~-l~s~~~d~~i~~wd~~~  292 (479)
                      ..|.++|.+++|+++++++++++.  ++.+++|+.++++.+..+.+|...|.+++|+|++++ +++++.|+.+++||.+.
T Consensus       112 ~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~  191 (325)
T d1pgua1         112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP  191 (325)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT
T ss_pred             ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccc
Confidence            347788999999999999887765  678999999999999999999999999999999875 67899999999999876


Q ss_pred             CCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         293 NKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       293 ~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      .+..... ....+...|.+++|+|++.                        ..+++++.|+.|++||+++++.+.++.+|
T Consensus       192 ~~~~~~~~~~~~~~~~v~~v~~~pd~~------------------------~~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         192 FKFSASDRTHHKQGSFVRDVEFSPDSG------------------------EFVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             BEEEEEECSSSCTTCCEEEEEECSTTC------------------------CEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             cccceecccccCCCCccEEeeeccccc------------------------eeccccccccceeeeeecccccccccccc
Confidence            5433221 1234556789999998632                        23567888899999999999999999998


Q ss_pred             CCceEEEEEe---CCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcce----EEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         372 KKSVRSVALH---PTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAI----INSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       372 ~~~v~~i~~~---~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~----v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                      ...+..+.|+   |++.+|++++.|+ |++||+.+++++..+..|...    ..++.+.++++|++|+.||+|++||+
T Consensus       248 ~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            8877666555   6788888888775 999999999998887665432    33445566779999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-31  Score=248.44  Aligned_cols=237  Identities=18%  Similarity=0.278  Sum_probs=198.1

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCce-----EEEEecCCcCEEEEEEcCCCCEEEEEECCCc
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKL-----KLSLTGHVGSVRGLTVSPRHPYLFSCGDDRT  284 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~-----~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~  284 (479)
                      +..+.+ +|...|.|++|+|+|++|++|+ |+.|+|||+.++..     .....+|.+.|.+++|+|++++|++++.|+.
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~  120 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST  120 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence            334445 7999999999999999999997 89999999976532     2344578999999999999999999999999


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEE
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVIT  347 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~s  347 (479)
                      |++||+.............+...+.++.++|++..+++++.++.+++|+.....                 ......+++
T Consensus       121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~  200 (337)
T d1gxra_         121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT  200 (337)
T ss_dssp             EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999998754432221122345678999999999999999999999999976532                 123467899


Q ss_pred             EeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-
Q psy8895         348 GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-  425 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-  425 (479)
                      ++.|+.+++||+++++.+..+ .|...|.+++|+|++.++++++.+. +++||..+++.. ....|...|++++|+|++ 
T Consensus       201 ~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         201 GGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             EETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSS
T ss_pred             ccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEEECCCCC
Confidence            999999999999999988877 4788999999999999999887774 999999887764 567899999999999998 


Q ss_pred             EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         426 VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       426 ~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      +|++|+.||+|++||..+++.+...
T Consensus       279 ~l~s~s~Dg~i~iwd~~~~~~~~~~  303 (337)
T d1gxra_         279 WFVSTGKDNLLNAWRTPYGASIFQS  303 (337)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEeCCCeEEEEECCCCCEEEEc
Confidence            8999999999999999999887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-30  Score=240.40  Aligned_cols=243  Identities=19%  Similarity=0.309  Sum_probs=201.2

Q ss_pred             ceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         209 WKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       209 ~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+..++|.||.+.|.+++|+|++++|+||+.||+|+|||+.+++.+..+.+|...|.+++|+|++.++++++.|+.+++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCCCCcccCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCCCCeEEEEeC
Q psy8895         289 DLEYNKAPVQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEESHPVITGSH  350 (479)
Q Consensus       289 d~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~~~~l~sgs~  350 (479)
                      +.......... ....................+.....+.....+......                 ......+++|+.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC  204 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeec
Confidence            98654322111 001111223333334445677777888887777654321                 123457899999


Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeee--cCCcceEEEEEEcCCC-E
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNL--PGHNAIINSICVNNEG-V  426 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~--~~h~~~v~~l~~~~~~-~  426 (479)
                      |+.|++||+++++++.++.+|...|++++|+|++.+|++++.|. +++|+....+....+  ..|...|.+++++|++ +
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  284 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL  284 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCE
T ss_pred             CceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCE
Confidence            99999999999999999999999999999999999999988775 999999988876654  4567789999999998 8


Q ss_pred             EEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         427 LVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       427 l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      |++|+.||.|++||+.+++.+..++
T Consensus       285 l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         285 LLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCEEEEEECCCCcEEEEEc
Confidence            9999999999999999998887764

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=6.3e-31  Score=252.49  Aligned_cols=226  Identities=13%  Similarity=0.190  Sum_probs=190.8

Q ss_pred             CccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc--eEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         219 LGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK--LKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      .++|+|++|+|+|++||+|+.|+.|+|||+.+++  .+..+.+|.++|.+++|+|++.+|++++.|++|++||++.....
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4789999999999999999999999999998775  56678999999999999999999999999999999999765432


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC---------------------CCCCCeEEEEeCCCcEE
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA---------------------TEESHPVITGSHDCTIR  355 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---------------------~~~~~~l~sgs~d~~v~  355 (479)
                      .......+...+.++.|+|+++.+++++.++++++|+.+...                     .+++..+++|+.|++|+
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~  166 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  166 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence            222123456789999999999999999999999999754321                     12456789999999999


Q ss_pred             EEECCCC------------------eeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceE
Q psy8895         356 LWDLAAG------------------KSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAII  416 (479)
Q Consensus       356 iwd~~~~------------------~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v  416 (479)
                      +||+...                  ..+.....|...|.+++|+|++..+++++.|. +++||..+++.+..+.+|...|
T Consensus       167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  246 (371)
T d1k8kc_         167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPL  246 (371)
T ss_dssp             EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred             EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccc
Confidence            9998642                  34566678899999999999999999988775 9999999999999999999999


Q ss_pred             EEEEEcCCCEEEEEeCCCcEEEEecCCC
Q psy8895         417 NSICVNNEGVLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       417 ~~l~~~~~~~l~sg~~dg~i~lWd~~~~  444 (479)
                      .+++|+|++.+++++.|+.+++|+....
T Consensus       247 ~s~~fs~d~~~la~g~d~~~~~~~~~~~  274 (371)
T d1k8kc_         247 LAVTFITESSLVAAGHDCFPVLFTYDSA  274 (371)
T ss_dssp             EEEEEEETTEEEEEETTSSCEEEEEETT
T ss_pred             eeeeecCCCCEEEEEcCCceEEEEeeCC
Confidence            9999999996656667888888776543

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.6e-30  Score=247.19  Aligned_cols=232  Identities=27%  Similarity=0.473  Sum_probs=195.8

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe------------------cCCcCEEEEEEcCCCCEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT------------------GHVGSVRGLTVSPRHPYLFS  278 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~------------------~h~~~v~~v~~~~~~~~l~s  278 (479)
                      +|.+.|+|++|+|+|++|++|+ |++|+|||+.+++.+..+.                  +|...|.+++|+|++++|++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s  138 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  138 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence            6999999999999999999987 8999999999988776654                  35667999999999999999


Q ss_pred             EECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------CCC
Q psy8895         279 CGDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------TEE  341 (479)
Q Consensus       279 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------~~~  341 (479)
                      |+.|+.|++||....+.....  ..+...+.++.+++++..+++++.++.+++|+.....                 ..+
T Consensus       139 ~~~dg~v~i~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  216 (388)
T d1erja_         139 GAEDRLIRIWDIENRKIVMIL--QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  216 (388)
T ss_dssp             EETTSCEEEEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCC
Confidence            999999999999876544332  3456789999999999999999999999999976532                 124


Q ss_pred             CCeEEEEeCCCcEEEEECCCCeeEEEE-------ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeE--------
Q psy8895         342 SHPVITGSHDCTIRLWDLAAGKSLCTL-------TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKF--------  405 (479)
Q Consensus       342 ~~~l~sgs~d~~v~iwd~~~~~~~~~~-------~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~--------  405 (479)
                      ...+++|+.|+.|++||+.++..+..+       .+|...|++++|+|++.+|++++.|+ +++||+.+++.        
T Consensus       217 ~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  296 (388)
T d1erja_         217 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  296 (388)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc
Confidence            567999999999999999998776654       35788999999999999999988775 99999875532        


Q ss_pred             ----EeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         406 ----IQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       406 ----~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                          ......|...|.+++++|++ +|++|+.||+|++||+++++++.+++
T Consensus       297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~  347 (388)
T d1erja_         297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ  347 (388)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence                34456788999999999988 89999999999999999999988775

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=7.8e-30  Score=236.73  Aligned_cols=235  Identities=14%  Similarity=0.234  Sum_probs=191.3

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      .+.+++.||.+.|++++|+|+|++|+||+.|++|++||+++++....+ .+|...|.+++|+|++. +++++.|+.+++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            356789999999999999999999999999999999999999988777 46889999999999986 4567889999999


Q ss_pred             ECCCCCcccC-CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-------------CCCCCeEEEEeCCCcE
Q psy8895         289 DLEYNKAPVQ-PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-------------TEESHPVITGSHDCTI  354 (479)
Q Consensus       289 d~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-------------~~~~~~l~sgs~d~~v  354 (479)
                      +......... .........+.++.+++++..++.++ ++.+.+|+.....             .++...+++|+.|+.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i  160 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV  160 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            9865332111 11122345688999999998776655 4688898754211             2345679999999999


Q ss_pred             EEEECCCCeeEE-EEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEE---eeecCCcceEEEEEEcCCC-EEE
Q psy8895         355 RLWDLAAGKSLC-TLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFI---QNLPGHNAIINSICVNNEG-VLV  428 (479)
Q Consensus       355 ~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~---~~~~~h~~~v~~l~~~~~~-~l~  428 (479)
                      ++||+++++... ....|...|++++|+|++.++++++.+ .+++||..++...   ..+.+|...|++++++|++ +|+
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~  240 (299)
T d1nr0a2         161 HVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA  240 (299)
T ss_dssp             EEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceE
Confidence            999998876544 344689999999999999999888877 5999999877554   4567899999999999998 899


Q ss_pred             EEeCCCcEEEEecCCCeE
Q psy8895         429 SGADNGTMCFWDWRTGYN  446 (479)
Q Consensus       429 sg~~dg~i~lWd~~~~~~  446 (479)
                      +|+.||.|++||++++..
T Consensus       241 sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         241 TGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             EEETTSCEEEEETTCTTS
T ss_pred             EEcCCCEEEEEECCCCCc
Confidence            999999999999997644

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-29  Score=231.48  Aligned_cols=269  Identities=16%  Similarity=0.198  Sum_probs=196.0

Q ss_pred             EEeeecCCcccceEEEEEccCCceEEEecCCCeEEEEeecccceEeeecccccceEEEEecCCCCccccceEEeccccEE
Q psy8895          24 TVIRHYHGHLSSVNTISLHPTIDVLITAGRDSTARVWDVRTKANVYTLTGHTNTIASVVTQASEPQVGTKTVLLESCERI  103 (479)
Q Consensus        24 ~~~~~~~gH~~~V~~l~~sp~g~~laSgs~D~~vriWd~~t~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  103 (479)
                      ++++++.||.++|++|+|+|    |+|||.||+|++||+.+++     .+|...|.++.+......              
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~--------------   60 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEY--------------   60 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCC--------------
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeE--------------
Confidence            45677899999999999998    9999999999999987653     578888888876432110              


Q ss_pred             EEeecccCceeeecccccccccccchhhhhhhhhcccchhhhhccceeeEEeeccccccceeccccccccccccccccCC
Q psy8895         104 MFVLGTAGFLLSCLPSLLDFGTIRPWQLQIIQEQCFLNLQEVQRHSVHTLVFRSLKRTHDMFISCQELVPSTENQLVPTT  183 (479)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  183 (479)
                                    .+...++++++|+....                                                 
T Consensus        61 --------------~s~s~D~~v~~w~~~~~-------------------------------------------------   77 (287)
T d1pgua2          61 --------------SSISWDDTLKVNGITKH-------------------------------------------------   77 (287)
T ss_dssp             --------------EEEETTTEEEETTEEEE-------------------------------------------------
T ss_pred             --------------EEEeecccccccccccc-------------------------------------------------
Confidence                          01122344555543210                                                 


Q ss_pred             CCchhHHHHHhHhcCCCCCCCCCCcceeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcC
Q psy8895         184 ASNTQIIQQAKAKALPMPKPQWHAPWKLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGS  263 (479)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~  263 (479)
                                                       .+...+.++++++++..++++ .++.+.+|+..+++....+..+. .
T Consensus        78 ---------------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  122 (287)
T d1pgua2          78 ---------------------------------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLNS-P  122 (287)
T ss_dssp             ---------------------------------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECSS-C
T ss_pred             ---------------------------------ccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeeccccc-e
Confidence                                             011234567777887777665 45678899999998887776443 4


Q ss_pred             EEEEEEcCCCCEEEEEECC-CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC
Q psy8895         264 VRGLTVSPRHPYLFSCGDD-RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES  342 (479)
Q Consensus       264 v~~v~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  342 (479)
                      +  .++++++..++.++.| +.+++|++......... ...+...+.+++|+|++.+++                     
T Consensus       123 ~--~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~---------------------  178 (287)
T d1pgua2         123 G--SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-KTPLRAKPSYISISPSETYIA---------------------  178 (287)
T ss_dssp             E--EEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-SSCCSSCEEEEEECTTSSEEE---------------------
T ss_pred             e--eeeeccCcceeeeccccceeeeeeccccceeeee-eeccCCceeEEEeccCccccc---------------------
Confidence            4  3556677777777766 57999998644332221 123456799999999877654                     


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEE-EEccCCCceEEEEEeCC----------CcEEEEEcCC-cEEEEeCCC-CeEEeee
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLC-TLTNHKKSVRSVALHPT----------LYMFASASPD-NIKQWKCPE-GKFIQNL  409 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~-~~~~h~~~v~~i~~~~~----------~~~l~s~s~d-~i~~w~~~~-~~~~~~~  409 (479)
                          +|+.|+.|++||+.+++... .+..|...|.+++|+|.          ..++++++.| .+++|++.+ ++.+..+
T Consensus       179 ----~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~  254 (287)
T d1pgua2         179 ----AGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL  254 (287)
T ss_dssp             ----EEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEET
T ss_pred             ----cccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe
Confidence                55666777777777776554 35679999999999875          4578888877 499999866 5677888


Q ss_pred             cCCcceEEEEEEcCCCEEEEEeCCCcEEEEec
Q psy8895         410 PGHNAIINSICVNNEGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       410 ~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~  441 (479)
                      .+|...|++++++|++.|+|++.|++|++||+
T Consensus       255 ~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         255 NAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             CCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence            89999999999999999999999999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.3e-28  Score=232.62  Aligned_cols=231  Identities=27%  Similarity=0.436  Sum_probs=195.5

Q ss_pred             EEecCCCccE-EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         213 RVISGHLGWV-RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       213 ~~~~~h~~~v-~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      .+|+||.+.| +|+++  ++++|+||+.|++|+|||+.+++++.++.+|.++|.+++|+|++ +|++++.|++|++|++.
T Consensus         6 ~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           6 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred             EEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence            4689998875 66665  57899999999999999999999999999999999999999865 89999999999999998


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------------
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------------  339 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------------  339 (479)
                      ..+..................+.+++..+++++.|+.+++|+......                                
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            765443322222333455667788889999999999999999764311                                


Q ss_pred             ------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCC
Q psy8895         340 ------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       340 ------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h  412 (479)
                            .....++++..|+.|++||+++++.+....++...+.++.++|++..+++++.|+ +++|+..++..+..+.+|
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h  242 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  242 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred             cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccc
Confidence                  0134678999999999999999999999999999999999999999998888775 999999999999999999


Q ss_pred             cceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEE
Q psy8895         413 NAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       413 ~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      ...|.++++++ .+|++|+.||+|++||++++...
T Consensus       243 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         243 TALVGLLRLSD-KFLVSAAADGSIRGWDANDYSRK  276 (355)
T ss_dssp             SSCCCEEEECS-SEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccccccccccc-ceeeeeeccccccccccccccee
Confidence            99999999874 58999999999999999987654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.3e-28  Score=221.96  Aligned_cols=215  Identities=26%  Similarity=0.480  Sum_probs=164.7

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP  296 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~  296 (479)
                      +|.+.|.+++|  ++++|++|+.|+.|++|++..+........+.....  .+.+....++++..++.+++||.......
T Consensus        53 ~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          53 GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             cCCCCEeeeec--ccceeecccccccccccccccccccccccccccccc--cccccccceeecccccceeEeeccccccc
Confidence            45566666665  578999999999999999999988777665554443  34455668899999999999998765432


Q ss_pred             cCC-CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------CCCCeEEEEeCCCcEEEEECC
Q psy8895         297 VQP-GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------EESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       297 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      ... ....+...+....+.  ...+.+++.|+.+++|+......               .....+++++.|++|++||++
T Consensus       129 ~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~  206 (293)
T d1p22a2         129 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE  206 (293)
T ss_dssp             EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred             cccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecc
Confidence            211 112344556666554  46788999999999999876432               124578999999999999999


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCC---------CeEEeeecCCcceEEEEEEcCCCEEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPE---------GKFIQNLPGHNAIINSICVNNEGVLVSG  430 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~---------~~~~~~~~~h~~~v~~l~~~~~~~l~sg  430 (479)
                      +.+.+..+.+|...+..  ++++..+|++++.| .|++||+.+         ...+..+.+|.+.|+++++++ .+|+||
T Consensus       207 ~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d~-~~l~s~  283 (293)
T d1p22a2         207 CGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE-FQIVSS  283 (293)
T ss_dssp             TCCEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECS-SCEEEC
T ss_pred             cceeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEcC-CEEEEE
Confidence            99999999988888775  45667788888776 599998532         346788899999999999853 479999


Q ss_pred             eCCCcEEEEe
Q psy8895         431 ADNGTMCFWD  440 (479)
Q Consensus       431 ~~dg~i~lWd  440 (479)
                      |.||+|++||
T Consensus       284 s~Dg~i~iWD  293 (293)
T d1p22a2         284 SHDDTILIWD  293 (293)
T ss_dssp             CSSSEEEEEC
T ss_pred             ecCCEEEEeC
Confidence            9999999998

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-28  Score=237.19  Aligned_cols=186  Identities=17%  Similarity=0.207  Sum_probs=136.7

Q ss_pred             ccEEEEEEcCC-----CcEEEEEeCCCeEEEEECCCCc---------------eEEE---EecCCcCEEEEEEcCCCCEE
Q psy8895         220 GWVRCVAVEPG-----NEWFATGSADKIIKVWDLATGK---------------LKLS---LTGHVGSVRGLTVSPRHPYL  276 (479)
Q Consensus       220 ~~v~~~~~~~~-----g~~l~sgs~d~~i~iWd~~~~~---------------~~~~---~~~h~~~v~~v~~~~~~~~l  276 (479)
                      ..+..+++.++     +.++++++.|+++++|++....               ....   ...+...+.+++|+|++ ++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~l  198 (393)
T d1sq9a_         120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LI  198 (393)
T ss_dssp             SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EE
T ss_pred             CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EE
Confidence            34455555543     5789999999999999974221               0111   12344568899999998 88


Q ss_pred             EEEECCCcEEEEECCCCCcccC----CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC
Q psy8895         277 FSCGDDRTVKCWDLEYNKAPVQ----PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC  352 (479)
Q Consensus       277 ~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~  352 (479)
                      ++|+.|++|++||+++.+....    .....+...|.+++|+|+++.+++++.|+++                      +
T Consensus       199 asgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~----------------------~  256 (393)
T d1sq9a_         199 ATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF----------------------G  256 (393)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE----------------------E
T ss_pred             EEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCc----------------------c
Confidence            9999999999999987654321    1123467789999999999988777666532                      1


Q ss_pred             cEEEEECCCCeeEEEE-------------ccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEE-
Q psy8895         353 TIRLWDLAAGKSLCTL-------------TNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIIN-  417 (479)
Q Consensus       353 ~v~iwd~~~~~~~~~~-------------~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~-  417 (479)
                      .|++||+++++.+.++             .+|...|++++|+|++++|++++.|. |++||+.+++++.++.+|...|. 
T Consensus       257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~  336 (393)
T d1sq9a_         257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI  336 (393)
T ss_dssp             EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSS
T ss_pred             eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccC
Confidence            2556666666555554             47999999999999999999999885 99999999999999999987664 


Q ss_pred             ---EEEEcCCC-EEE
Q psy8895         418 ---SICVNNEG-VLV  428 (479)
Q Consensus       418 ---~l~~~~~~-~l~  428 (479)
                         .+++++++ .++
T Consensus       337 ~~~~~~~~~~~~~~~  351 (393)
T d1sq9a_         337 EEDILAVDEHGDSLA  351 (393)
T ss_dssp             GGGCCCBCTTSCBCS
T ss_pred             CccEEEECCCCCEEE
Confidence               35566665 444

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-28  Score=228.73  Aligned_cols=236  Identities=27%  Similarity=0.478  Sum_probs=182.8

Q ss_pred             eeEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         210 KLYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       210 ~~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      +..++++||.+.|.+ +++++|++|||||.|++|+|||+.+++++.++.+|...|.+++|+|+  ++++++.|+.+++|+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~   83 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN   83 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEE
T ss_pred             CcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceecccccccc
Confidence            445689999999865 35667999999999999999999999999999999999999999975  899999999999999


Q ss_pred             CCCCCcccCCCCCCC---------------------------CC---------CeEEEEEeCCCCEEEEEeCCCeEEEEe
Q psy8895         290 LEYNKAPVQPGSMDS---------------------------ES---------GIFSMTFDNSGSRLITTEADKTVKLYK  333 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~---------------------------~~---------~i~~~~~~~~~~~l~~~~~d~~i~~~~  333 (479)
                      ...............                           ..         ........+....++.++.++.+++|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d  163 (342)
T d2ovrb2          84 AETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD  163 (342)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEE
T ss_pred             cccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEee
Confidence            865432111000000                           00         000112233445677888888899888


Q ss_pred             CCCCCC---------------CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEE
Q psy8895         334 EDDSAT---------------EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQ  397 (479)
Q Consensus       334 ~~~~~~---------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~  397 (479)
                      ......               .+...+++|+.|++|++||++.++.+..+..|...+.++++++  .+|++++.| .+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         164 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKI  241 (342)
T ss_dssp             GGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEE
T ss_pred             cccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEE
Confidence            654321               2346789999999999999999999999999999999988876  477777766 5999


Q ss_pred             EeCCCCeEEeeecC---CcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         398 WKCPEGKFIQNLPG---HNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       398 w~~~~~~~~~~~~~---h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ||....+....+.+   |...+.++.+++ .++++|+.||+|++||+++|+.++.+.
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNK-NFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEECS-SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EecccccccccccccceeeeceeecccCC-CeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            99998887777654   556777777664 388999999999999999999887664

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.5e-29  Score=231.89  Aligned_cols=223  Identities=16%  Similarity=0.099  Sum_probs=164.4

Q ss_pred             CCCccEEEEEEcCC-CcEEEEEeCCCeEEEEECCCCceEEEEecCCc-CEEEEEEcCCCCEEEEEECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPG-NEWFATGSADKIIKVWDLATGKLKLSLTGHVG-SVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~-g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~  294 (479)
                      +|.++|.+++|+|+ +.+|++|+.|+.|++|++..+........+.. ......+.++...+++++.|+.+++||++...
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccc
Confidence            47889999999986 56899999999999999998877666655543 34455566777899999999999999985432


Q ss_pred             cccC----CCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC---------------------CCCCeEEEEe
Q psy8895         295 APVQ----PGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT---------------------EESHPVITGS  349 (479)
Q Consensus       295 ~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---------------------~~~~~l~sgs  349 (479)
                      ....    ..............+.+.+..+++++.|+.+++|+......                     .....+++++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  213 (342)
T d1yfqa_         134 DGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             TBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             cceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec
Confidence            2110    11111122334556677888999999999999999765432                     1234688999


Q ss_pred             CCCcEEEEECCCCee---------EE------EEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecC-C
Q psy8895         350 HDCTIRLWDLAAGKS---------LC------TLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPG-H  412 (479)
Q Consensus       350 ~d~~v~iwd~~~~~~---------~~------~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~-h  412 (479)
                      .|+.+.+|+......         ..      ....|...|++++|+|++.+|++++.|+ |++||..+++.+..+.. |
T Consensus       214 ~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         214 IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence            999999999864321         11      1124667899999999999999998885 99999999999988865 4


Q ss_pred             cceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         413 NAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      ...+  +++++++ .|++++.|+++++|..
T Consensus       294 ~~~~--~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         294 EDSV--VKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SSEE--EEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CCEE--EEEEeCCCEEEEEEcCCcEEEeee
Confidence            4444  5666666 7888888888888864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.4e-27  Score=220.05  Aligned_cols=212  Identities=16%  Similarity=0.208  Sum_probs=166.7

Q ss_pred             cCC-CccEEEEEEcC--CCcEEEEEeCCCeEEEEECCCCce--------EEEEecCCcCEEEEEEcCCCCEEEEEE--CC
Q psy8895         216 SGH-LGWVRCVAVEP--GNEWFATGSADKIIKVWDLATGKL--------KLSLTGHVGSVRGLTVSPRHPYLFSCG--DD  282 (479)
Q Consensus       216 ~~h-~~~v~~~~~~~--~g~~l~sgs~d~~i~iWd~~~~~~--------~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d  282 (479)
                      .+| ...|++++|+|  +|++|++|+.||+|+|||+..++.        ...+..|.++|.+++|+++++++++++  .+
T Consensus        59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~  138 (325)
T d1pgua1          59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD  138 (325)
T ss_dssp             CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSS
T ss_pred             eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecccc
Confidence            355 46799999998  568999999999999999865432        234567889999999999999988775  46


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCC
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAG  362 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~  362 (479)
                      +.+++|++++++.....  ..+...+.++.|+|++..+                        +++++.|+.+++||+...
T Consensus       139 ~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~------------------------~~~~~~d~~v~~~d~~~~  192 (325)
T d1pgua1         139 NFGVFISWDSGNSLGEV--SGHSQRINACHLKQSRPMR------------------------SMTVGDDGSVVFYQGPPF  192 (325)
T ss_dssp             CSEEEEETTTCCEEEEC--CSCSSCEEEEEECSSSSCE------------------------EEEEETTTEEEEEETTTB
T ss_pred             ceEEEEeecccccceee--eecccccccccccccccce------------------------EEEeeccccccccccccc
Confidence            78999999876654332  2356789999998875532                        467778888888888877


Q ss_pred             eeEEEE---ccCCCceEEEEEeCC-CcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEE----EEcCCCEEEEEeCC
Q psy8895         363 KSLCTL---TNHKKSVRSVALHPT-LYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSI----CVNNEGVLVSGADN  433 (479)
Q Consensus       363 ~~~~~~---~~h~~~v~~i~~~~~-~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l----~~~~~~~l~sg~~d  433 (479)
                      +....+   ..|...|++++|+|+ +.++++++.| .|++||..+++.+..+.+|...+..+    ++.++.+|++++.|
T Consensus       193 ~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred             ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC
Confidence            766554   356778999999996 6788887766 59999999999999999887765444    44444499999999


Q ss_pred             CcEEEEecCCCeEEEEEEEe
Q psy8895         434 GTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       434 g~i~lWd~~~~~~~~~~~~~  453 (479)
                      ++|+|||++++++++.+...
T Consensus       273 ~~i~iwd~~~~~~~~~~~~~  292 (325)
T d1pgua1         273 ATIRVWDVTTSKCVQKWTLD  292 (325)
T ss_dssp             SEEEEEETTTTEEEEEEECC
T ss_pred             CeEEEEECCCCCEEEEEEec
Confidence            99999999999988877543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.4e-27  Score=227.27  Aligned_cols=238  Identities=21%  Similarity=0.295  Sum_probs=180.4

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCc------eEEEEecCCcCEEEEEE------cC-CCCEEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGK------LKLSLTGHVGSVRGLTV------SP-RHPYLFSCG  280 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~------~~~~~~~h~~~v~~v~~------~~-~~~~l~s~~  280 (479)
                      ..++|.+.|.+++++  +++++|+|.|++|+|||..+..      .......|...+..+..      +. ++..+++++
T Consensus         9 ~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            456899999999986  4799999999999999986543      12333445544333222      11 234677899


Q ss_pred             CCCcEEEEECCCCCcccC--------CCCCCCCCCeEEEEEeCC-----CCEEEEEeCCCeEEEEeCCCCCC--------
Q psy8895         281 DDRTVKCWDLEYNKAPVQ--------PGSMDSESGIFSMTFDNS-----GSRLITTEADKTVKLYKEDDSAT--------  339 (479)
Q Consensus       281 ~d~~i~~wd~~~~~~~~~--------~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~~~~~~~~~--------  339 (479)
                      .|+.+++|++........        .........++.+.+.++     +.++++++.|+++++|+......        
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~  166 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN  166 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred             CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence            999999999754332111        011112345777777665     35789999999999998632110        


Q ss_pred             --------------------------CCCCeEEEEeCCCcEEEEECCCCeeEEEE------ccCCCceEEEEEeCCCcEE
Q psy8895         340 --------------------------EESHPVITGSHDCTIRLWDLAAGKSLCTL------TNHKKSVRSVALHPTLYMF  387 (479)
Q Consensus       340 --------------------------~~~~~l~sgs~d~~v~iwd~~~~~~~~~~------~~h~~~v~~i~~~~~~~~l  387 (479)
                                                .....+++|+.|++|++||+.+++++..+      .+|..+|++++|+|++.+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l  246 (393)
T d1sq9a_         167 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL  246 (393)
T ss_dssp             CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred             eccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence                                      01236889999999999999999887654      4688999999999999999


Q ss_pred             EEEcCCc----EEEEeCCCCeEEeeec-------------CCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         388 ASASPDN----IKQWKCPEGKFIQNLP-------------GHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       388 ~s~s~d~----i~~w~~~~~~~~~~~~-------------~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      ++++.|.    +++||..+++.+..+.             +|.+.|++++|+|++ +|+|||.|++|++||+++|++++.
T Consensus       247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~  326 (393)
T d1sq9a_         247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  326 (393)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEE
Confidence            9998774    8999999998877664             899999999999998 999999999999999999999988


Q ss_pred             EEEe
Q psy8895         450 LQVR  453 (479)
Q Consensus       450 ~~~~  453 (479)
                      ++..
T Consensus       327 l~gH  330 (393)
T d1sq9a_         327 LNMH  330 (393)
T ss_dssp             EECC
T ss_pred             ECCc
Confidence            7643

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.6e-26  Score=211.12  Aligned_cols=239  Identities=13%  Similarity=0.109  Sum_probs=178.1

Q ss_pred             eEEEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceE---EEEecCCcCEEEEEEcCCC-CEEEEEECCCcEE
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLK---LSLTGHVGSVRGLTVSPRH-PYLFSCGDDRTVK  286 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~---~~~~~h~~~v~~v~~~~~~-~~l~s~~~d~~i~  286 (479)
                      .....++|.+.|++|+|+|++++|++||.|++|+|||+.++...   ....+|..+|.+++|+|++ .++++|+.|+.|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            34456789999999999999999999999999999999766432   2334699999999999864 5788999999999


Q ss_pred             EEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC-----------------------CCCCC
Q psy8895         287 CWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA-----------------------TEESH  343 (479)
Q Consensus       287 ~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~-----------------------~~~~~  343 (479)
                      +|++.......... ...........+.++...+++++.++++++|+.....                       .....
T Consensus        83 ~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          83 KVDLIGSPSFQALT-NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EECSSSSSSEEECB-SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeccccccccccc-ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99997655433221 1222334455566778899999999999999853211                       01234


Q ss_pred             eEEEEeCCCcEEEEECCCCeeEE---EEccCCCceEEEEEeC-CCcEEEEEcCC-cEEEEeCCCCeEE------------
Q psy8895         344 PVITGSHDCTIRLWDLAAGKSLC---TLTNHKKSVRSVALHP-TLYMFASASPD-NIKQWKCPEGKFI------------  406 (479)
Q Consensus       344 ~l~sgs~d~~v~iwd~~~~~~~~---~~~~h~~~v~~i~~~~-~~~~l~s~s~d-~i~~w~~~~~~~~------------  406 (479)
                      .+++++.|+.|++||+...+...   ....+...+.+..+.+ ++..+++++.+ .+.+|+.......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            68899999999999998765432   2334455666666655 56677777666 5888886543211            


Q ss_pred             ---eeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEE
Q psy8895         407 ---QNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       407 ---~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                         ....+|...|++++|+|++ +|+||+.||+|++||+++++.+..+
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~  289 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEe
Confidence               1123566789999999998 9999999999999999999877654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-24  Score=196.85  Aligned_cols=220  Identities=24%  Similarity=0.412  Sum_probs=178.0

Q ss_pred             EEecCCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q psy8895         213 RVISGHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEY  292 (479)
Q Consensus       213 ~~~~~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~  292 (479)
                      ....+|...|+|+++  +|++||||+.|++|+|||+.+++++.++.+|.+.|.+++|  ++++|++|+.|+.+++|++..
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~   84 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT   84 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccccccc
Confidence            345678899999764  7999999999999999999999999999999999998887  567999999999999999987


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC------------------CCCeEEEEeCCCcE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE------------------ESHPVITGSHDCTI  354 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------------~~~~l~sgs~d~~v  354 (479)
                      .........    .........+....++++..++.+.+|+.......                  ....+++++.|+++
T Consensus        85 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i  160 (293)
T d1p22a2          85 GEMLNTLIH----HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTI  160 (293)
T ss_dssp             CCEEEEECC----CCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEE
T ss_pred             ccccccccc----cccccccccccccceeecccccceeEeeccccccccccccccccccccccceecccccccccCCCce
Confidence            654332211    11223445566778999999999999997654321                  12457889999999


Q ss_pred             EEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC
Q psy8895         355 RLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD  432 (479)
Q Consensus       355 ~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~  432 (479)
                      ++||+++++.+..+.+|...+..+.+++  ..+++++.| .+++||..+.+.+....+|...+.++  ++++ +|++|+.
T Consensus       161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~  236 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNGHKRGIACLQYRD--RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAY  236 (293)
T ss_dssp             EEEETTTCCEEEEEECCSSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEEEET
T ss_pred             eeecCCCCcEEEEEcccccccccccCCC--CeEEEecCCCEEEEEecccceeeeeecccceeeeec--cccceEEEEEcC
Confidence            9999999999999999999998888865  356666555 69999999999999999999888754  3444 8999999


Q ss_pred             CCcEEEEecCCC
Q psy8895         433 NGTMCFWDWRTG  444 (479)
Q Consensus       433 dg~i~lWd~~~~  444 (479)
                      ||.|++||+.++
T Consensus       237 dg~i~iwd~~~~  248 (293)
T d1p22a2         237 DGKIKVWDLVAA  248 (293)
T ss_dssp             TSCEEEEEHHHH
T ss_pred             CCEEEEEECCCC
Confidence            999999997643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.7e-24  Score=197.76  Aligned_cols=159  Identities=20%  Similarity=0.275  Sum_probs=121.4

Q ss_pred             EEcCCCcEEEEEeCCC-eEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCCC
Q psy8895         226 AVEPGNEWFATGSADK-IIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSMD  303 (479)
Q Consensus       226 ~~~~~g~~l~sgs~d~-~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~  303 (479)
                      +++++++.++.++.|+ .+++|++...+....+. .|...+.+++|+|++.+|++|+.|+.|++||+......... ...
T Consensus       125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~  203 (287)
T d1pgua2         125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAF  203 (287)
T ss_dssp             EEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCC
T ss_pred             eeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccc
Confidence            4556778888777765 79999998766555543 46788999999999999999999999999999876543221 234


Q ss_pred             CCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCC-CeeEEEEccCCCceEEEEEeC
Q psy8895         304 SESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAA-GKSLCTLTNHKKSVRSVALHP  382 (479)
Q Consensus       304 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~-~~~~~~~~~h~~~v~~i~~~~  382 (479)
                      +...+.+++|+|.+........               +...+++|+.|++|++||++. .+.+..+.+|...|++++|+|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~---------------~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~  268 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEI---------------EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET  268 (287)
T ss_dssp             CSSCEEEEEECCCC------CC---------------SCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred             cccccceeeecccccccccccC---------------CCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC
Confidence            5678999999998776544333               345689999999999999977 556777789999999999999


Q ss_pred             CCcEEEEEcCCcEEEEeC
Q psy8895         383 TLYMFASASPDNIKQWKC  400 (479)
Q Consensus       383 ~~~~l~s~s~d~i~~w~~  400 (479)
                      ++.+++++.++.|++|++
T Consensus       269 ~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         269 PSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             TTEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEECCCeEEEEEE
Confidence            987665555557999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=2e-25  Score=211.77  Aligned_cols=224  Identities=13%  Similarity=0.116  Sum_probs=160.4

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE----------CCCcEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG----------DDRTVKC  287 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~----------~d~~i~~  287 (479)
                      |.+.|.+++|+|+|++|++++.++.+++|++.+++....+..|...+.+++|+|++++|+.++          .++.+++
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v  163 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  163 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             CCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceee
Confidence            566788999999999999999999999999999999989999999999999999999998643          3457999


Q ss_pred             EECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCC------------------------CCC
Q psy8895         288 WDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATE------------------------ESH  343 (479)
Q Consensus       288 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~------------------------~~~  343 (479)
                      ||+...+....   ..+......+.|+|+++.++.++.++.+.+|+.......                        ...
T Consensus       164 ~d~~~~~~~~~---~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  240 (360)
T d1k32a3         164 YDMEGRKIFAA---TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM  240 (360)
T ss_dssp             EETTTTEEEEC---SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred             eccccCceeee---cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence            99987654332   234456788999999999999999999999985432110                        001


Q ss_pred             eEEEEeCCC---cEEEEEC--CCCeeEEEEccCCCceEEEEEeCC---CcEEEEEcCCc-EEEEeCCCCeEEeeecCCcc
Q psy8895         344 PVITGSHDC---TIRLWDL--AAGKSLCTLTNHKKSVRSVALHPT---LYMFASASPDN-IKQWKCPEGKFIQNLPGHNA  414 (479)
Q Consensus       344 ~l~sgs~d~---~v~iwd~--~~~~~~~~~~~h~~~v~~i~~~~~---~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~  414 (479)
                      .++++..+.   ..++|.+  ..++ ...+..+.+.+..+.+.+.   ..++++++.+. +++||..+++..    .|.+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~  315 (360)
T d1k32a3         241 TSEAGEYDLNDMYKRSSPINVDPGD-YRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKN  315 (360)
T ss_dssp             SCCCCCCCCTTGGGGCEECSCCCBC-EEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEE
T ss_pred             cccccceeecccccceeecccCcCc-eeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecC
Confidence            111222111   1123332  2222 2233334444444444333   34556666664 899999887653    3456


Q ss_pred             eEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         415 IINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       415 ~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      .|.+++|+||| +|++++.||.|++||+++|+.-.+
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~  351 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT  351 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence            79999999999 999999999999999998866443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.2e-23  Score=205.25  Aligned_cols=236  Identities=12%  Similarity=0.005  Sum_probs=158.9

Q ss_pred             CCccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCE-----------EEEEEcCCCCEEEEEE-CCCc
Q psy8895         218 HLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSV-----------RGLTVSPRHPYLFSCG-DDRT  284 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v-----------~~v~~~~~~~~l~s~~-~d~~  284 (479)
                      |.+.+.+++|+|||+++ +++..++.+++||..++.....+.+|...+           ..+.+++++..++... ..+.
T Consensus       107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~  186 (426)
T d1hzua2         107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK  186 (426)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCe
Confidence            33445566788999986 555688999999999999888777665443           4445555555444332 2344


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCC-----------C---------CCC
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSAT-----------E---------ESH  343 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~-----------~---------~~~  343 (479)
                      +.+++........ .........+..+.++|+++++.++..+ ..+.+++......           .         ...
T Consensus       187 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (426)
T d1hzua2         187 VLLVNYKDIDNLT-VTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG  265 (426)
T ss_dssp             EEEEECSSSSSCE-EEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred             EEEEEecccccee-eEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence            4444443322111 1112344567889999999988877644 4577777654321           0         001


Q ss_pred             --eEEEEeCCCcEEEEECCC-------CeeEEEEccCCCceEEEEEeCCCcEEEEE-------c-CCcEEEEeCCCCeEE
Q psy8895         344 --PVITGSHDCTIRLWDLAA-------GKSLCTLTNHKKSVRSVALHPTLYMFASA-------S-PDNIKQWKCPEGKFI  406 (479)
Q Consensus       344 --~l~sgs~d~~v~iwd~~~-------~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-------s-~d~i~~w~~~~~~~~  406 (479)
                        ..++.+.|+.+.+|+...       .+...++++|...+.+++|+|++..++..       + ++.+++||..+++..
T Consensus       266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~  345 (426)
T d1hzua2         266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK  345 (426)
T ss_dssp             EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred             ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence              123445688999998764       36788899999999999999999999853       2 235999999988765


Q ss_pred             eee---------cCCcceEEEEEEcCCC-EE-EEE----eCCCcEEEEecCCCeEEEEEEEeE
Q psy8895         407 QNL---------PGHNAIINSICVNNEG-VL-VSG----ADNGTMCFWDWRTGYNFQRLQVRC  454 (479)
Q Consensus       407 ~~~---------~~h~~~v~~l~~~~~~-~l-~sg----~~dg~i~lWd~~~~~~~~~~~~~~  454 (479)
                      .++         ..|...|..+.||||| ++ +++    +.||.|+|||.+|++..++++..|
T Consensus       346 ~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~  408 (426)
T d1hzua2         346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR  408 (426)
T ss_dssp             CEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred             eEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence            543         3456679999999999 44 554    468899999999998776655443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.89  E-value=5.5e-22  Score=193.26  Aligned_cols=226  Identities=12%  Similarity=0.034  Sum_probs=151.7

Q ss_pred             CCccEEEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCC
Q psy8895         218 HLGWVRCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNK  294 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~  294 (479)
                      +......+.++|+|..+ ++...++.|.+||..+++...... .+......++|+|+++++++++ .++.+.++|.+..+
T Consensus       161 ~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~  240 (432)
T d1qksa2         161 PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK  240 (432)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccce
Confidence            34556778899998765 667778999999998877554332 3455788999999999887765 45688899987655


Q ss_pred             cccCC--C-CCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCC-------------CCCCeEEEEeCCCcEEEE
Q psy8895         295 APVQP--G-SMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSAT-------------EESHPVITGSHDCTIRLW  357 (479)
Q Consensus       295 ~~~~~--~-~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~-------------~~~~~l~sgs~d~~v~iw  357 (479)
                      .....  . ...+........+...+...... ..++.+.+|.......             .....+++++.+.+.++|
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw  320 (432)
T d1qksa2         241 LVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY  320 (432)
T ss_dssp             EEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEE
T ss_pred             EEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCcccee
Confidence            43211  0 11122333344444444333333 2477888887654321             233567889999999999


Q ss_pred             ECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEe----
Q psy8895         358 DLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGA----  431 (479)
Q Consensus       358 d~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~----  431 (479)
                      +..+..      .|.....++++ ||+..+++++.|. +++|+..++.   .+..|...|..++|+||| +++.+.    
T Consensus       321 ~~~~~~------~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~DG~~v~~S~~~~~  390 (432)
T d1qksa2         321 VDATLN------PEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNKDGTEVWFSVWNGK  390 (432)
T ss_dssp             EECTTC------SSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECTTSSEEEEEEECCT
T ss_pred             ecccCC------CCCCeeeEEEE-EechhhcccccCCceEeccccccc---ccCCCCCcEEEeEECCCCCEEEEEEecCC
Confidence            866543      24333445665 8999999999885 9999975542   334567788899999999 553332    


Q ss_pred             -CCCcEEEEecCCCeEEEEEEEe
Q psy8895         432 -DNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       432 -~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                       .||.|+|||.+|++..++++..
T Consensus       391 ~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         391 DQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             TSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCcEEEEECCCceEEeEecCC
Confidence             5789999999999776655443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.4e-21  Score=183.70  Aligned_cols=227  Identities=11%  Similarity=0.081  Sum_probs=160.1

Q ss_pred             EEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCC------cCEEEEEEcCCCCEEEEEE------------CCC
Q psy8895         223 RCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHV------GSVRGLTVSPRHPYLFSCG------------DDR  283 (479)
Q Consensus       223 ~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~------------~d~  283 (479)
                      .+++|+|||+++ ++++.++.|.+||+.+++....+....      ..+..++|+|||++++.++            .+.
T Consensus        43 ~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~  122 (346)
T d1jmxb_          43 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPP  122 (346)
T ss_dssp             CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred             ceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcc
Confidence            467889999986 666789999999999998887765432      2356789999999887654            467


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CC------
Q psy8895         284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EE------  341 (479)
Q Consensus       284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~------  341 (479)
                      .+.+||..+.+.............+..+.+++++..++.+   ..+.+|+......                +.      
T Consensus       123 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         123 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             EEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred             eEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccccEEEE
Confidence            8899998765443221111112233345555655544432   3455565432110                00      


Q ss_pred             --------------------CCeEEEEeCCCcEEEEECCCCeeEEE-EccCCCceEEEEEeCCCcEEEEEcCCcEEEEeC
Q psy8895         342 --------------------SHPVITGSHDCTIRLWDLAAGKSLCT-LTNHKKSVRSVALHPTLYMFASASPDNIKQWKC  400 (479)
Q Consensus       342 --------------------~~~l~sgs~d~~v~iwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~  400 (479)
                                          ...+.++..+..+.+||+.++..... +..|...+..+.+++++..++....+.+.+||.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~  279 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDL  279 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEET
T ss_pred             EecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEEC
Confidence                                00123344566789999988776544 456788899999999888888888888999999


Q ss_pred             CCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         401 PEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       401 ~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .+++.+..+. +...+.+++|+||| +|++++.|+.|++||.++++.+.++++.
T Consensus       280 ~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p  332 (346)
T d1jmxb_         280 KQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP  332 (346)
T ss_dssp             TTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred             CCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence            9999887765 33458899999999 8999999999999999999999887664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=2.1e-19  Score=165.29  Aligned_cols=200  Identities=17%  Similarity=0.162  Sum_probs=146.1

Q ss_pred             EEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCCC
Q psy8895         223 RCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       223 ~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      ..++++++++.+ +++..++.+.+|+..+++....+..+ ....++.++|++..++. +..++.+.+|+..+....... 
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~-  154 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV-  154 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred             cccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeec-
Confidence            345667777654 55667789999999999888877755 46788999999998764 556888999998766543321 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                        ........+.+++++..++++..                        .++.+.+|+....+....+.. ...+..+++
T Consensus       155 --~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  207 (301)
T d1l0qa2         155 --SVGRSPKGIAVTPDGTKVYVANF------------------------DSMSISVIDTVTNSVIDTVKV-EAAPSGIAV  207 (301)
T ss_dssp             --ECCSSEEEEEECTTSSEEEEEET------------------------TTTEEEEEETTTTEEEEEEEC-SSEEEEEEE
T ss_pred             --ccCCCceEEEeeccccceeeecc------------------------cccccccccccceeeeecccc-cCCcceeec
Confidence              22345677788887776654433                        234566667666666665543 456788999


Q ss_pred             eCCCcEEEEEc-C---CcEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EE-EEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         381 HPTLYMFASAS-P---DNIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VL-VSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       381 ~~~~~~l~s~s-~---d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l-~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      ++++..+..+. +   +.+.+||..+++.+..+..+. .+..++++||+ +| ++++.|++|++||+++++.++++++
T Consensus       208 ~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccceeeeeeeeecCCCeEEEEEcCCC-CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence            99887654432 2   249999999999988877654 57899999998 55 7888999999999999999888765

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=2.4e-20  Score=174.39  Aligned_cols=224  Identities=18%  Similarity=0.164  Sum_probs=166.6

Q ss_pred             EEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCc-----CEEEEEEcCCCCEEEEEE------------CCCc
Q psy8895         223 RCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVG-----SVRGLTVSPRHPYLFSCG------------DDRT  284 (479)
Q Consensus       223 ~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~-----~v~~v~~~~~~~~l~s~~------------~d~~  284 (479)
                      .+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++.+.            .+..
T Consensus        37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~  116 (337)
T d1pbyb_          37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTR  116 (337)
T ss_dssp             CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred             cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccc
Confidence            357899999987 5777899999999999999888876643     345789999999988765            4578


Q ss_pred             EEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC----------------CC-------
Q psy8895         285 VKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT----------------EE-------  341 (479)
Q Consensus       285 i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~----------------~~-------  341 (479)
                      +.+||..+.+.....   .....+..+.++++++++++++.+  +.+|+......                ..       
T Consensus       117 ~~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         117 VALYDAETLSRRKAF---EAPRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             EEEEETTTTEEEEEE---ECCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCC
T ss_pred             eeeccccCCeEEEec---cccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecc
Confidence            889998766543221   122345678999999999988754  55666543210                00       


Q ss_pred             ---CCe----EEE----------EeCCCcEEEEECCCCeeEEE-EccCCCceEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895         342 ---SHP----VIT----------GSHDCTIRLWDLAAGKSLCT-LTNHKKSVRSVALHPTLYMFASASPDNIKQWKCPEG  403 (479)
Q Consensus       342 ---~~~----l~s----------gs~d~~v~iwd~~~~~~~~~-~~~h~~~v~~i~~~~~~~~l~s~s~d~i~~w~~~~~  403 (479)
                         ...    ...          ++.++.+.+||+..++.... +..+...+..++++|++..+.++ ++.+.+||..++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~  270 (337)
T d1pbyb_         192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN  270 (337)
T ss_dssp             CTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT
T ss_pred             ccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC
Confidence               000    111          12345689999998876543 45677788889999999887765 366999999999


Q ss_pred             eEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         404 KFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       404 ~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.+..+. +...+.+++|+||| +|++++.|++|++||.++++.+.++++.
T Consensus       271 ~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         271 ASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             EEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             cEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            9988775 44567899999999 8999999999999999999998887653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=2.4e-19  Score=174.31  Aligned_cols=229  Identities=10%  Similarity=0.026  Sum_probs=152.2

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEE--E---ecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCc
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLS--L---TGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKA  295 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~--~---~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~  295 (479)
                      +..++|+|||++|++++.|++|++||+.+++....  +   .+|.+.+.+++|+|||+++++ +..++.+++||.+....
T Consensus        64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~  143 (426)
T d1hzua2          64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP  143 (426)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred             eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence            45789999999999999999999999999875432  2   245666778888999998754 56889999999987654


Q ss_pred             ccCC---------CCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCC------------------CCCCeEE-
Q psy8895         296 PVQP---------GSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSAT------------------EESHPVI-  346 (479)
Q Consensus       296 ~~~~---------~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~------------------~~~~~l~-  346 (479)
                      ....         ...........+..++++..++....+ +.+.+++......                  +...+++ 
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  223 (426)
T d1hzua2         144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMT  223 (426)
T ss_dssp             EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEE
T ss_pred             eEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEe
Confidence            3211         111223445667777777776665544 4455554332211                  1233444 


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEccC--CCceEEEEEeCC--CcEEEE-EcCC-cEEEEeCCC-------CeEEeeecCCc
Q psy8895         347 TGSHDCTIRLWDLAAGKSLCTLTNH--KKSVRSVALHPT--LYMFAS-ASPD-NIKQWKCPE-------GKFIQNLPGHN  413 (479)
Q Consensus       347 sgs~d~~v~iwd~~~~~~~~~~~~h--~~~v~~i~~~~~--~~~l~s-~s~d-~i~~w~~~~-------~~~~~~~~~h~  413 (479)
                      +...+..+.+++..+++.+......  ........+.+.  +..++. .+.+ .+..|+...       ++....+.+|.
T Consensus       224 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~  303 (426)
T d1hzua2         224 AANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG  303 (426)
T ss_dssp             EETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSS
T ss_pred             eeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCC
Confidence            4456677999999999887766432  122222333222  222222 2223 366665433       46788899999


Q ss_pred             ceEEEEEEcCCC-EEE-------EEeCCCcEEEEecCCCeEEEEE
Q psy8895         414 AIINSICVNNEG-VLV-------SGADNGTMCFWDWRTGYNFQRL  450 (479)
Q Consensus       414 ~~v~~l~~~~~~-~l~-------sg~~dg~i~lWd~~~~~~~~~~  450 (479)
                      ..+..++++|++ +|+       +++.|++|++||+++++..+++
T Consensus       304 ~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~  348 (426)
T d1hzua2         304 GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV  348 (426)
T ss_dssp             SCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred             CceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence            999999999999 777       4567899999999998766443

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.80  E-value=2.5e-18  Score=162.12  Aligned_cols=189  Identities=13%  Similarity=0.054  Sum_probs=152.8

Q ss_pred             EEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCC--cEEEEECCCCCcccCCCC
Q psy8895         225 VAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDR--TVKCWDLEYNKAPVQPGS  301 (479)
Q Consensus       225 ~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~  301 (479)
                      -.||| ||+++|+++. +.|.+||+..+.....  +|...|.+++|+|||++|++++.+.  .|++||.++++....   
T Consensus         8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~---   81 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKF---   81 (360)
T ss_dssp             EEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEEC---
T ss_pred             ccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEe---
Confidence            46899 9999999875 6999999998877643  6999999999999999998876553  899999987654432   


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH  381 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~  381 (479)
                      ..+...+.++.|+|++++++                         +++.++.+++|++.+++....+..|...+.+++|+
T Consensus        82 ~~~~~~v~~~~~spdg~~l~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          82 EENLGNVFAMGVDRNGKFAV-------------------------VANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             CCCCCSEEEEEECTTSSEEE-------------------------EEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             eCCCceEEeeeecccccccc-------------------------eeccccccccccccccceeeeeecccccccchhhc
Confidence            34567899999999988765                         45566777888888888888888899999999999


Q ss_pred             CCCcEEEEEc----------CC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCe
Q psy8895         382 PTLYMFASAS----------PD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGY  445 (479)
Q Consensus       382 ~~~~~l~s~s----------~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~  445 (479)
                      |++.+|+.+.          .+ .+.+|+..+++... +..|...+..++++|++ .|++++.|+.+++||.....
T Consensus       137 pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         137 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             cceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            9999987543          12 37899998876654 44566778889999999 89999999999999977553

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=8.1e-16  Score=145.79  Aligned_cols=199  Identities=13%  Similarity=0.036  Sum_probs=136.4

Q ss_pred             CccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCCceEEEEecCC------cCEEEEEEcCCCCEEEEEECCCcEEEEECC
Q psy8895         219 LGWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLTGHV------GSVRGLTVSPRHPYLFSCGDDRTVKCWDLE  291 (479)
Q Consensus       219 ~~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~~~~~~~~~h~------~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~  291 (479)
                      .....++.++|+|+. +++.+.|+.+.+|+..++........+.      .....+.+++++. ++..+.++.+.+|+..
T Consensus       164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~  242 (373)
T d2madh_         164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADIS  242 (373)
T ss_pred             eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcC
Confidence            344567889999875 5788999999999999887765544322      2234556666664 4566788999999987


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH  371 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h  371 (479)
                      .....................+.|........+.++....+..     .....+++...++++.+||..+++.+..+. +
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~  316 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT-----SEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-L  316 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEec-----CCCceEEeecCCCeEEEEECCCCcEEEEec-C
Confidence            6543211111112223334444555555555555554433321     123456778888999999999999998875 5


Q ss_pred             CCceEEEEEeCCCc--EEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEcCC
Q psy8895         372 KKSVRSVALHPTLY--MFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVNNE  424 (479)
Q Consensus       372 ~~~v~~i~~~~~~~--~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~  424 (479)
                      ...+..++|+||++  ++++++.+ .|++||..+++.++++.++....+.+++.++
T Consensus       317 ~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         317 GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            67789999999987  45666666 4999999999999999988877777777654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=3e-17  Score=152.92  Aligned_cols=167  Identities=11%  Similarity=0.025  Sum_probs=105.8

Q ss_pred             CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCCCC----------------
Q psy8895         239 ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPGSM----------------  302 (479)
Q Consensus       239 ~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------------  302 (479)
                      .+..+.+||..+++....+..+ ..+..++|+|+++++++++.+  +.+||..+.+........                
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             cccceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceee
Confidence            4678899999999988887754 457889999999999988654  778998765432110000                


Q ss_pred             --CCCCCe---EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC------------------CCCCeEEEEeCCCcEEEEEC
Q psy8895         303 --DSESGI---FSMTFDNSGSRLITTEADKTVKLYKEDDSAT------------------EESHPVITGSHDCTIRLWDL  359 (479)
Q Consensus       303 --~~~~~i---~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~------------------~~~~~l~sgs~d~~v~iwd~  359 (479)
                        ......   .......+.........++.+.+|+......                  .....++.  .++.+++||+
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~v~d~  267 (337)
T d1pbyb_         190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDL  267 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE--EESEEEEEET
T ss_pred             ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE--ccccEEEEEC
Confidence              000000   0011111111111111223455555443211                  11223333  3689999999


Q ss_pred             CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecC
Q psy8895         360 AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPG  411 (479)
Q Consensus       360 ~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~  411 (479)
                      .+++.+.++. +...+.+++|+||+..+++++.+ .|.+||..+++.+.+++-
T Consensus       268 ~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         268 EKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999998875 56678999999999988887766 599999999998887653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.76  E-value=1.3e-15  Score=144.37  Aligned_cols=220  Identities=11%  Similarity=0.003  Sum_probs=148.2

Q ss_pred             EEEcCCCcEEEEE----------eCCCeEEEEECCCCceEEEEecCCcCE-------EEEEEcCCCCEEEEE--ECCCcE
Q psy8895         225 VAVEPGNEWFATG----------SADKIIKVWDLATGKLKLSLTGHVGSV-------RGLTVSPRHPYLFSC--GDDRTV  285 (479)
Q Consensus       225 ~~~~~~g~~l~sg----------s~d~~i~iWd~~~~~~~~~~~~h~~~v-------~~v~~~~~~~~l~s~--~~d~~i  285 (479)
                      ++|+|||++|+.+          +.++.|.+||..+++.+..+..+....       ..+.|+++++.++..  ..++.+
T Consensus        71 ~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~  150 (373)
T d2madh_          71 PVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAV  150 (373)
T ss_pred             EEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCce
Confidence            4555666665554          456789999999999988877665443       456788888866544  345678


Q ss_pred             EEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEE-EEEeCCCeEEEEeCCCCCC----------------------CCC
Q psy8895         286 KCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRL-ITTEADKTVKLYKEDDSAT----------------------EES  342 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~~~~~~~~~----------------------~~~  342 (479)
                      .+|+....+...      ......++.++++++.+ ++.+.|+++.+|+......                      ...
T Consensus       151 ~~~~~~~~~~~~------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (373)
T d2madh_         151 GLVVQGGSSDDQ------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKS  224 (373)
T ss_pred             EEeeccCCeEEE------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCC
Confidence            888876543321      12234567888888754 6788999999998654321                      112


Q ss_pred             CeEEEEeCCCcEEEEECCCCeeEE--EEccCC----------CceEEEEEeCCCcEEE----------EE-cCCcEEEEe
Q psy8895         343 HPVITGSHDCTIRLWDLAAGKSLC--TLTNHK----------KSVRSVALHPTLYMFA----------SA-SPDNIKQWK  399 (479)
Q Consensus       343 ~~l~sgs~d~~v~iwd~~~~~~~~--~~~~h~----------~~v~~i~~~~~~~~l~----------s~-s~d~i~~w~  399 (479)
                      ..++..+.++++.+|+........  ....+.          .....+++++++..++          .. ..+.+.+||
T Consensus       225 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d  304 (373)
T d2madh_         225 GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVT  304 (373)
T ss_pred             ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEE
Confidence            335667788999999988765322  222221          1233455666554333          22 233588999


Q ss_pred             CCCCeEEeeecCCcceEEEEEEcCCC-E--EEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         400 CPEGKFIQNLPGHNAIINSICVNNEG-V--LVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       400 ~~~~~~~~~~~~h~~~v~~l~~~~~~-~--l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ..+++.+..+. +...+..++|+||| .  +++++.|++|++||..+|+.++++.
T Consensus       305 ~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         305 GLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             CCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            99999888775 45568899999998 3  4689999999999999999877653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.73  E-value=7.5e-15  Score=134.18  Aligned_cols=200  Identities=18%  Similarity=0.182  Sum_probs=149.5

Q ss_pred             EEEEEcCCCcEE-EEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCcEEEEECCCCCcccCCC
Q psy8895         223 RCVAVEPGNEWF-ATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       223 ~~~~~~~~g~~l-~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      ..++|+|||++| ++++.++.|++||+.+++.+..+..+. .+..+++++++..++. +..++.+.+|+....+..... 
T Consensus        35 ~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  112 (301)
T d1l0qa2          35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-  112 (301)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-
T ss_pred             eEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-cccccccccccccccccccccceeeecccccceeeeec-
Confidence            467899999977 577789999999999999998888776 4688999999986654 557789999999766543221 


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                        .......++.++|++..++                        +++..+..+.+|+..+.+.+..+..+ ..+..+++
T Consensus       113 --~~~~~~~~~~~~~dg~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  165 (301)
T d1l0qa2         113 --KTGKSPLGLALSPDGKKLY------------------------VTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAV  165 (301)
T ss_dssp             --ECSSSEEEEEECTTSSEEE------------------------EEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEE
T ss_pred             --cccccceEEEeecCCCeee------------------------eeeccccceeeeeccccceeeecccC-CCceEEEe
Confidence              2334567788888877654                        34556778889999998888887644 56789999


Q ss_pred             eCCCcEEEEEcCC-c-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEE---eCCCcEEEEecCCCeEEEEEEE
Q psy8895         381 HPTLYMFASASPD-N-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSG---ADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       381 ~~~~~~l~s~s~d-~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg---~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                      +|++..+..+..+ . +.+|+....+.......+. .+..+++++++ .++.+   ..+++|++||..+++.++++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             eccccceeeecccccccccccccceeeeecccccC-CcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            9998776666544 3 7788887777776665554 45677888887 44433   3457899999999988877653

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.71  E-value=5.9e-16  Score=150.09  Aligned_cols=198  Identities=13%  Similarity=0.035  Sum_probs=142.8

Q ss_pred             CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC--C-CCCCCCC
Q psy8895         231 NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP--G-SMDSESG  307 (479)
Q Consensus       231 g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~-~~~~~~~  307 (479)
                      .-++++.+.|++|.|||..+++++..+..+. .+..++|+|||+++++++.|+.+++||+.+.+.....  . ...+.+.
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            3446899999999999999999999998774 6899999999999999999999999999765432110  0 0111122


Q ss_pred             eEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccC-----------CCceE
Q psy8895         308 IFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNH-----------KKSVR  376 (479)
Q Consensus       308 i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h-----------~~~v~  376 (479)
                      +.+..|+|+|+++                        +++++.+++|++||..+++++..+..|           .....
T Consensus       111 ~~s~~~SpDG~~l------------------------~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (432)
T d1qksa2         111 ETSKMEGWEDKYA------------------------IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA  166 (432)
T ss_dssp             EECCSTTCTTTEE------------------------EEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred             EEecccCCCCCEE------------------------EEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCcee
Confidence            2233344455544                        356677888899999888888776543           34567


Q ss_pred             EEEEeCCCcEEE-EEcCC-cEEEEeCCCCeEEeeec-CCcceEEEEEEcCCC-EEE-EEeCCCcEEEEecCCCeEEEEEE
Q psy8895         377 SVALHPTLYMFA-SASPD-NIKQWKCPEGKFIQNLP-GHNAIINSICVNNEG-VLV-SGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       377 ~i~~~~~~~~l~-s~s~d-~i~~w~~~~~~~~~~~~-~h~~~v~~l~~~~~~-~l~-sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      ++.++|++..++ +..++ .+.+|+..+++...... .+...+..++++|++ +++ +...+..+.++|.++++......
T Consensus       167 ~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         167 AILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            789999987654 44444 59999998876544332 345567889999999 554 44556789999999998887665


Q ss_pred             Ee
Q psy8895         452 VR  453 (479)
Q Consensus       452 ~~  453 (479)
                      +.
T Consensus       247 ~g  248 (432)
T d1qksa2         247 TG  248 (432)
T ss_dssp             CS
T ss_pred             cC
Confidence            54

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=8.2e-15  Score=137.58  Aligned_cols=192  Identities=11%  Similarity=0.063  Sum_probs=124.2

Q ss_pred             EEEcCCCcEEEEEe--CCCeEEEEECCCCceEEEEecCCc-------CEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCC
Q psy8895         225 VAVEPGNEWFATGS--ADKIIKVWDLATGKLKLSLTGHVG-------SVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNK  294 (479)
Q Consensus       225 ~~~~~~g~~l~sgs--~d~~i~iWd~~~~~~~~~~~~h~~-------~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~  294 (479)
                      ++|+|+|++++.++  .+..+.+|+..+++....+..+..       ....+.+++|+..++.. ..++.+.+++.....
T Consensus       111 ~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~  190 (355)
T d2bbkh_         111 TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH  190 (355)
T ss_dssp             EEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS
T ss_pred             EEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc
Confidence            46788888776654  456889999999888777665432       22345566666655443 334455555544322


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCeEEEEeCC----
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHPVITGSHD----  351 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~l~sgs~d----  351 (479)
                      ..       ....+....+.+.+..++.++.++.+.+|+......                   ......++.+.|    
T Consensus       191 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~  263 (355)
T d2bbkh_         191 PE-------DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRI  263 (355)
T ss_dssp             CT-------TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             ce-------ecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeE
Confidence            11       111223345677778888888999999998764321                   001111222222    


Q ss_pred             ----------------CcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc--EEEEEcCC-cEEEEeCCCCeEEeeecCC
Q psy8895         352 ----------------CTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY--MFASASPD-NIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       352 ----------------~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~d-~i~~w~~~~~~~~~~~~~h  412 (479)
                                      .+|.+||..+++.+.++.. ...+.+++|+||++  +++++..+ .|.+||..+++.++++.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~  342 (355)
T d2bbkh_         264 YLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL  342 (355)
T ss_dssp             EEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC
T ss_pred             EEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCc
Confidence                            3689999999998888763 45688999999986  45666655 5999999999999999877


Q ss_pred             cceEEEEEEcCC
Q psy8895         413 NAIINSICVNNE  424 (479)
Q Consensus       413 ~~~v~~l~~~~~  424 (479)
                      .....++.+.++
T Consensus       343 G~~p~~i~~~d~  354 (355)
T d2bbkh_         343 GHGPQVITTADM  354 (355)
T ss_dssp             CSSCCEEECCCC
T ss_pred             CCCccEEEeCCC
Confidence            655555554443

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.2e-14  Score=134.93  Aligned_cols=228  Identities=13%  Similarity=0.216  Sum_probs=142.2

Q ss_pred             CCccEEEEEEcCCCcEEEE-EeCCCeEEEEECCCCceEEEE---ecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECCC
Q psy8895         218 HLGWVRCVAVEPGNEWFAT-GSADKIIKVWDLATGKLKLSL---TGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEY  292 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~s-gs~d~~i~iWd~~~~~~~~~~---~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~  292 (479)
                      |.+.+.+++|+|||++|++ +..|+.|++|++........+   ..+...+..++|+|||+++++++. ++.+.+|+...
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~  114 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLED  114 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeecccc
Confidence            4456678899999998855 455899999999766433222   223445678999999999998875 67899998765


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCC-----------------------CCCCe-EEE
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSAT-----------------------EESHP-VIT  347 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~-----------------------~~~~~-l~s  347 (479)
                      ...............+.++.++|+++.++.++. +..+.+|+......                       ..... ..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~  194 (333)
T d1ri6a_         115 GLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV  194 (333)
T ss_dssp             TEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEE
T ss_pred             ccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEee
Confidence            433222111223345667889999998877764 45688887644221                       01112 233


Q ss_pred             EeCCCcEEEEECCCCe----eEEEEc------cCCCceEEEEEeCCCcEEEEE-cC-CcEEEEeCCCCeEEee---ecCC
Q psy8895         348 GSHDCTIRLWDLAAGK----SLCTLT------NHKKSVRSVALHPTLYMFASA-SP-DNIKQWKCPEGKFIQN---LPGH  412 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~----~~~~~~------~h~~~v~~i~~~~~~~~l~s~-s~-d~i~~w~~~~~~~~~~---~~~h  412 (479)
                      ....+...+|+.....    ....+.      ........+++++++..+... .. +.+.+|+.........   ...+
T Consensus       195 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (333)
T d1ri6a_         195 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT  274 (333)
T ss_dssp             ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred             ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC
Confidence            4455566677654321    112221      122356778899998755544 33 3588887755433222   2223


Q ss_pred             cceEEEEEEcCCC-EEEE-EeCCCcEEEEec--CCCe
Q psy8895         413 NAIINSICVNNEG-VLVS-GADNGTMCFWDW--RTGY  445 (479)
Q Consensus       413 ~~~v~~l~~~~~~-~l~s-g~~dg~i~lWd~--~~~~  445 (479)
                      ...+..++|+||| +|++ ++.+++|++|++  ++|.
T Consensus       275 ~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~  311 (333)
T d1ri6a_         275 ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGL  311 (333)
T ss_dssp             SSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTE
T ss_pred             CCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCc
Confidence            4456778999999 5554 456799999955  5664

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.64  E-value=6.6e-15  Score=138.21  Aligned_cols=226  Identities=14%  Similarity=0.094  Sum_probs=148.8

Q ss_pred             EEEcCCCcEEEE----------EeCCCeEEEEECCCCceEEEEecCCc-------CEEEEEEcCCCCEEEEEE--CCCcE
Q psy8895         225 VAVEPGNEWFAT----------GSADKIIKVWDLATGKLKLSLTGHVG-------SVRGLTVSPRHPYLFSCG--DDRTV  285 (479)
Q Consensus       225 ~~~~~~g~~l~s----------gs~d~~i~iWd~~~~~~~~~~~~h~~-------~v~~v~~~~~~~~l~s~~--~d~~i  285 (479)
                      ++|+|||++|+.          ++.|+.|++||+.+++.+..+..+..       ....++|++++++++.++  .+..+
T Consensus        52 ~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~  131 (355)
T d2bbkh_          52 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV  131 (355)
T ss_dssp             EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred             eEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCcee
Confidence            456667665554          34578999999999998877654432       224678999999887664  56789


Q ss_pred             EEEECCCCCcccCCCCCC-----CCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCC------------CCCCeEEE
Q psy8895         286 KCWDLEYNKAPVQPGSMD-----SESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSAT------------EESHPVIT  347 (479)
Q Consensus       286 ~~wd~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~------------~~~~~l~s  347 (479)
                      .+||..+.+.........     .......+.+.+++..+..... ++.+.+++......            .....++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (355)
T d2bbkh_         132 GVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW  211 (355)
T ss_dssp             EEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             eeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEE
Confidence            999998765432210000     0112234566677766655433 33444544332211            13346788


Q ss_pred             EeCCCcEEEEECCCCeeE--EEEccCC----------CceEEEEEeCCCcEEEEEcC-----------CcEEEEeCCCCe
Q psy8895         348 GSHDCTIRLWDLAAGKSL--CTLTNHK----------KSVRSVALHPTLYMFASASP-----------DNIKQWKCPEGK  404 (479)
Q Consensus       348 gs~d~~v~iwd~~~~~~~--~~~~~h~----------~~v~~i~~~~~~~~l~s~s~-----------d~i~~w~~~~~~  404 (479)
                      ++.++++++|++..++..  .....+.          .....+++++++..+.....           +.+.+||..+++
T Consensus       212 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~  291 (355)
T d2bbkh_         212 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  291 (355)
T ss_dssp             EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             ecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCc
Confidence            899999999999876532  2222221          12345888998876654321           248899999999


Q ss_pred             EEeeecCCcceEEEEEEcCCC---EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         405 FIQNLPGHNAIINSICVNNEG---VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       405 ~~~~~~~h~~~v~~l~~~~~~---~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .+..+.. ...+.+++++|||   .+++++.|++|++||.++|+.++++.
T Consensus       292 ~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         292 RLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            8887764 3457899999997   35677889999999999999887664

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.58  E-value=3.6e-14  Score=132.08  Aligned_cols=225  Identities=12%  Similarity=0.109  Sum_probs=150.5

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCCEEE-EEECCCcEEEEECCCCCcccCCCCC
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHPYLF-SCGDDRTVKCWDLEYNKAPVQPGSM  302 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~~  302 (479)
                      ++|++++++|++++.|++|.+||+.+++.+.++. .|.....+++|+|||++++ +++.++.|++||+.+.+........
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4678999999999999999999999999988886 3555678999999999875 5567899999999877654221110


Q ss_pred             C----CCCCeEEEEEeCCCCEEEEEe------------CCCeEEEEeCCCCCCC---------CCCeEEEEeC-------
Q psy8895         303 D----SESGIFSMTFDNSGSRLITTE------------ADKTVKLYKEDDSATE---------ESHPVITGSH-------  350 (479)
Q Consensus       303 ~----~~~~i~~~~~~~~~~~l~~~~------------~d~~i~~~~~~~~~~~---------~~~~l~sgs~-------  350 (479)
                      .    ....+..++++|+++.++++.            .+..+.+|+.......         ....++..+.       
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA  161 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence            1    112345688999999888765            4567777875442210         1111222222       


Q ss_pred             CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcE--------------------------EEEEcCC-cEEEEeCCCC
Q psy8895         351 DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYM--------------------------FASASPD-NIKQWKCPEG  403 (479)
Q Consensus       351 d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~--------------------------l~s~s~d-~i~~w~~~~~  403 (479)
                      +..+.+||+.+++.+..+..+.. ...+.++|++..                          ++++..+ .+.+|+..++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (346)
T d1jmxb_         162 GPDIYKMDVKTGKYTVALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG  240 (346)
T ss_dssp             SSSEEEECTTTCCEEEEECSTTC-CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTC
T ss_pred             CCcceEEEccCCCEEEEEecCCC-ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCC
Confidence            24578899988888887764422 223333333221                          1222222 3777888877


Q ss_pred             eEEe-eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEEEEE
Q psy8895         404 KFIQ-NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       404 ~~~~-~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      .... ....|...+..+.+++++ .++.+. ++.|++||..+++.+..+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~  289 (346)
T d1jmxb_         241 KTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN  289 (346)
T ss_dssp             CEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE
T ss_pred             ceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc
Confidence            6543 345677778888888776 666555 4689999999998877654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.8e-13  Score=124.59  Aligned_cols=183  Identities=11%  Similarity=0.150  Sum_probs=120.7

Q ss_pred             EEEEEcCCCcEEEEEeC-CCeEEEEECCCCceEE--EEecCCcCEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCCcccC
Q psy8895         223 RCVAVEPGNEWFATGSA-DKIIKVWDLATGKLKL--SLTGHVGSVRGLTVSPRHPYLFSCG-DDRTVKCWDLEYNKAPVQ  298 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~l~s~~-~d~~i~~wd~~~~~~~~~  298 (479)
                      ..++|+|||++|++++. ++.+.+|+........  ....+...+.++.++|++++++.++ .+..+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            35789999999988875 6789999887765433  3445666788999999999888776 456799999765432211


Q ss_pred             ----CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCC---------------------------CCCCC-eE
Q psy8895         299 ----PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSA---------------------------TEESH-PV  345 (479)
Q Consensus       299 ----~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~---------------------------~~~~~-~l  345 (479)
                          ............+.|++++..+.... ..+...+++.....                           ..+.. .+
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                01112334567899999888776554 44566666543211                           01122 34


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEE---ccCCCceEEEEEeCCCcEEEEEc-CC-cEEEE--eCCCCeE
Q psy8895         346 ITGSHDCTIRLWDLAAGKSLCTL---TNHKKSVRSVALHPTLYMFASAS-PD-NIKQW--KCPEGKF  405 (479)
Q Consensus       346 ~sgs~d~~v~iwd~~~~~~~~~~---~~h~~~v~~i~~~~~~~~l~s~s-~d-~i~~w--~~~~~~~  405 (479)
                      +.+..++++.+|++........+   ......++.++|+||+++|+.+. ++ .|.+|  |..+|++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            55667789999998765433332   22345678899999999766554 43 48898  5566654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=2.5e-11  Score=118.35  Aligned_cols=233  Identities=12%  Similarity=0.022  Sum_probs=127.3

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC------------------CcCEEEEEEcCCCCEEEE
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH------------------VGSVRGLTVSPRHPYLFS  278 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h------------------~~~v~~v~~~~~~~~l~s  278 (479)
                      .|.+.+..+.|+|||+.||... ++.+.+|+..+++.......+                  .+....+.|||||+.++.
T Consensus       109 ~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~  187 (470)
T d2bgra1         109 RIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAY  187 (470)
T ss_dssp             CCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred             cCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccce
Confidence            3556677889999999999864 678999999888765432211                  123456789999999998


Q ss_pred             EECCCc-EEEEECC-----------------------------------CCCcccCCCC---------CCCCCCeEEEEE
Q psy8895         279 CGDDRT-VKCWDLE-----------------------------------YNKAPVQPGS---------MDSESGIFSMTF  313 (479)
Q Consensus       279 ~~~d~~-i~~wd~~-----------------------------------~~~~~~~~~~---------~~~~~~i~~~~~  313 (479)
                      ...|.+ ++.|++.                                   ..........         ......+..+.|
T Consensus       188 ~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  267 (470)
T d2bgra1         188 AQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTW  267 (470)
T ss_dssp             EEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEE
T ss_pred             eEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEE
Confidence            765432 4444321                                   1000000000         000112345666


Q ss_pred             eCCCCEEEEEe-CCC---eEEEEeCCC--CC-----------------C-------------CCCCeEEEEeCCCcEEEE
Q psy8895         314 DNSGSRLITTE-ADK---TVKLYKEDD--SA-----------------T-------------EESHPVITGSHDCTIRLW  357 (479)
Q Consensus       314 ~~~~~~l~~~~-~d~---~i~~~~~~~--~~-----------------~-------------~~~~~l~sgs~d~~v~iw  357 (479)
                      .+++..++... ..+   .+.++..+.  ..                 .             .....+.....|+..+||
T Consensus       268 ~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly  347 (470)
T d2bgra1         268 ATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHIC  347 (470)
T ss_dssp             EETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEE
T ss_pred             cCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeE
Confidence            66665444322 111   223333211  00                 0             011235566778776665


Q ss_pred             --ECCCCeeEEEEccCCCceEEE-EEeCCCcEEEEEcCC----cEEEE--eCCCCeEEe----eecCCcceEEEEEEcCC
Q psy8895         358 --DLAAGKSLCTLTNHKKSVRSV-ALHPTLYMFASASPD----NIKQW--KCPEGKFIQ----NLPGHNAIINSICVNNE  424 (479)
Q Consensus       358 --d~~~~~~~~~~~~h~~~v~~i-~~~~~~~~l~s~s~d----~i~~w--~~~~~~~~~----~~~~h~~~v~~l~~~~~  424 (479)
                        +... .....+..+...|..+ .++++..+|++...+    .-.+|  ++..+....    .+.+|...+..++||||
T Consensus       348 ~~~~~g-~~~~~lt~g~~~v~~~~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpd  426 (470)
T d2bgra1         348 YFQIDK-KDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKE  426 (470)
T ss_dssp             EEETTC-SCCEESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTT
T ss_pred             EEeccC-CceeeeccCCeeEEEEEEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCC
Confidence              4443 3334444445556665 344444344444332    12344  434333222    34578888999999999


Q ss_pred             C-EEE-E--EeCCCcEEEEecCCCeEEEEEE
Q psy8895         425 G-VLV-S--GADNGTMCFWDWRTGYNFQRLQ  451 (479)
Q Consensus       425 ~-~l~-s--g~~dg~i~lWd~~~~~~~~~~~  451 (479)
                      | +++ +  |...-.+++|+..+|..++.++
T Consensus       427 gky~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         427 AKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             SSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            9 544 3  3345569999999999988775

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.41  E-value=6.2e-12  Score=118.58  Aligned_cols=234  Identities=10%  Similarity=0.002  Sum_probs=144.8

Q ss_pred             eEEEecCCCccEEEEEEcCCCcEEEEEe----------CCCeEEEEECCCCceEEEEecCCc-------CEEEEEEcCCC
Q psy8895         211 LYRVISGHLGWVRCVAVEPGNEWFATGS----------ADKIIKVWDLATGKLKLSLTGHVG-------SVRGLTVSPRH  273 (479)
Q Consensus       211 ~~~~~~~h~~~v~~~~~~~~g~~l~sgs----------~d~~i~iWd~~~~~~~~~~~~h~~-------~v~~v~~~~~~  273 (479)
                      ....+.++...  .++|+|||++|+..+          .|+.|++||..+++.+..+..+..       ....++|+|||
T Consensus        58 ~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDG  135 (368)
T d1mdah_          58 TLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS  135 (368)
T ss_dssp             EEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTS
T ss_pred             EEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCC
Confidence            34445555544  478999999888755          477899999999998887764432       12368999999


Q ss_pred             CEEEEEE-CCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------C-
Q psy8895         274 PYLFSCG-DDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------E-  340 (479)
Q Consensus       274 ~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------~-  340 (479)
                      ++++.+. .++.+.+||+.+.+....... .....+    +......++..+.|+++.+++......           . 
T Consensus       136 k~l~va~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~----~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~  210 (368)
T d1mdah_         136 ACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHI----HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQ  210 (368)
T ss_dssp             SCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCC----EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTS
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEeEEeec-cCcceE----ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccccc
Confidence            9988775 579999999987654332110 000001    111123344445555555554332110           0 


Q ss_pred             ---------CCCeEEEEeCCCcEEEEECCCCeeEEEE--ccCC----------CceEEEEEeCCCcEEEEE-cCC-----
Q psy8895         341 ---------ESHPVITGSHDCTIRLWDLAAGKSLCTL--TNHK----------KSVRSVALHPTLYMFASA-SPD-----  393 (479)
Q Consensus       341 ---------~~~~l~sgs~d~~v~iwd~~~~~~~~~~--~~h~----------~~v~~i~~~~~~~~l~s~-s~d-----  393 (479)
                               .....+..+.++.+++++...+......  ..+.          .....++++|++..+... ..+     
T Consensus       211 ~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~  290 (368)
T d1mdah_         211 NCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             ccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence                     0011223344566677776654433211  1111          122457888886654332 111     


Q ss_pred             ----cEEEEeCCCCeEEeeecCCcceEEEEEEcCCC-E--EEEEeCCCcEEEEecCCCeEEEEEEE
Q psy8895         394 ----NIKQWKCPEGKFIQNLPGHNAIINSICVNNEG-V--LVSGADNGTMCFWDWRTGYNFQRLQV  452 (479)
Q Consensus       394 ----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~--l~sg~~dg~i~lWd~~~~~~~~~~~~  452 (479)
                          .+.+||..+++.+..+.. ...+..++++||+ .  +++++.|+.|++||..+|+.++++++
T Consensus       291 ~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         291 AAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             cCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence                378899999998887763 4568889999997 2  56778899999999999998877654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=1.2e-11  Score=116.45  Aligned_cols=184  Identities=4%  Similarity=-0.058  Sum_probs=107.6

Q ss_pred             EEEcCCCcEEEEEe-CCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC----C
Q psy8895         225 VAVEPGNEWFATGS-ADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ----P  299 (479)
Q Consensus       225 ~~~~~~g~~l~sgs-~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~  299 (479)
                      ++|+|||++++.+. .++.+.+||+.+++....+..+.....   .......++..+.|+++..+++........    .
T Consensus       129 ~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~  205 (368)
T d1mdah_         129 IGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQ  205 (368)
T ss_dssp             EEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCC
T ss_pred             eEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecc
Confidence            68999999888776 579999999999998887766543321   111233455566777777777653322110    0


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEe--------CCCeEEEEeCCCCCC-------------------CCCCeEEEEe-C-
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTE--------ADKTVKLYKEDDSAT-------------------EESHPVITGS-H-  350 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~~~~~~~~~~-------------------~~~~~l~sgs-~-  350 (479)
                      ........+....+.+++..+....        ..+.+..++......                   .....++... . 
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~  285 (368)
T d1mdah_         206 CTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEH  285 (368)
T ss_dssp             SCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEEC
T ss_pred             cccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCC
Confidence            0011112223344444444333222        222222222211110                   0111222211 1 


Q ss_pred             -------CCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc--EEEEEcCC-cEEEEeCCCCeEEeeecCC
Q psy8895         351 -------DCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY--MFASASPD-NIKQWKCPEGKFIQNLPGH  412 (479)
Q Consensus       351 -------d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~--~l~s~s~d-~i~~w~~~~~~~~~~~~~h  412 (479)
                             ..+|.+||..+++.+.++. +...+.+++|+||++  ++++...+ .+.+||..+++.+.+++-.
T Consensus       286 ~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         286 SRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             SSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECC
Confidence                   1358899999999888775 345788999999985  45666655 5999999999999888754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.10  E-value=5.5e-10  Score=108.59  Aligned_cols=171  Identities=10%  Similarity=-0.018  Sum_probs=109.4

Q ss_pred             CCccEEEEEEcCCCcEEEEEeC---------CCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSA---------DKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~---------d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      |...|.++.|+|||++|+.++.         ++.+.+||+.+++. ..+..|...+..+.|||||+.++.. .++.+.+|
T Consensus        60 ~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~  137 (470)
T d2bgra1          60 FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVK  137 (470)
T ss_dssp             SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEE
T ss_pred             ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEE
Confidence            4556778899999999998754         46788999998865 4677888899999999999999885 56789999


Q ss_pred             ECCCCCcccCCCCCC----------------CCCCeEEEEEeCCCCEEEEEeCCCe-EEEEeCC---CCCCCCCCe----
Q psy8895         289 DLEYNKAPVQPGSMD----------------SESGIFSMTFDNSGSRLITTEADKT-VKLYKED---DSATEESHP----  344 (479)
Q Consensus       289 d~~~~~~~~~~~~~~----------------~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~---~~~~~~~~~----  344 (479)
                      +...++.........                ..+....+.|+|+|+.++....|.+ +..+...   .........    
T Consensus       138 ~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (470)
T d2bgra1         138 IEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (470)
T ss_dssp             SSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             ECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeeeeec
Confidence            987665432211100                1122345779999999998876543 4433321   111110000    


Q ss_pred             ---EEEEeCCCcEEEEECCCCeeEEEE-----------ccCCCceEEEEEeCCCcEEEEE
Q psy8895         345 ---VITGSHDCTIRLWDLAAGKSLCTL-----------TNHKKSVRSVALHPTLYMFASA  390 (479)
Q Consensus       345 ---l~sgs~d~~v~iwd~~~~~~~~~~-----------~~h~~~v~~i~~~~~~~~l~s~  390 (479)
                         ..+.+.+.++.+||+..++.....           ......+..+.|.+++.+++..
T Consensus       218 ~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  277 (470)
T d2bgra1         218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (470)
T ss_dssp             CCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             cccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEE
Confidence               011223446788998765432221           1123456788898888766543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.90  E-value=6.4e-08  Score=91.04  Aligned_cols=220  Identities=10%  Similarity=0.030  Sum_probs=136.3

Q ss_pred             CCccEEEEEEcCCCcEEEE-EeCCCeEEEEECCCCceEEEEe-cCCcCEEEEEEcCCCC--EEEEEECCC----------
Q psy8895         218 HLGWVRCVAVEPGNEWFAT-GSADKIIKVWDLATGKLKLSLT-GHVGSVRGLTVSPRHP--YLFSCGDDR----------  283 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~s-gs~d~~i~iWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~--~l~s~~~d~----------  283 (479)
                      |.-...+..++|||++|+. ...++.|.++|+.+++....+. .+......++|+|+++  +++..+++.          
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~  149 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF  149 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence            3344455556789998854 5577899999999998877664 3556789999999988  444444332          


Q ss_pred             -------cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEeCCCCC----------------C
Q psy8895         284 -------TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKT-VKLYKEDDSA----------------T  339 (479)
Q Consensus       284 -------~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~----------------~  339 (479)
                             .+..+|.++.+...+.   ........+.++|+|+++++.+.+.. +...+.....                .
T Consensus       150 ~~~~~~~~~~~iD~~t~~v~~qI---~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~  226 (441)
T d1qnia2         150 SLDNSYTMFTAIDAETMDVAWQV---IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV  226 (441)
T ss_dssp             CGGGEEEEEEEEETTTCSEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred             ccccccceEEeecCccceeeEEE---ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence                   1244666654432221   11223556899999999988876532 1111111000                0


Q ss_pred             CCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEE-cCC-cEEEEeCCCCeEE--------eee
Q psy8895         340 EESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASA-SPD-NIKQWKCPEGKFI--------QNL  409 (479)
Q Consensus       340 ~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~-s~d-~i~~w~~~~~~~~--------~~~  409 (479)
                      .++..+ .-+.++.+.+++....+.+.++..+.+ ...+.++||++++..+ ..+ .+.+||+.+....        ..+
T Consensus       227 ~dGk~~-~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~  304 (441)
T d1qnia2         227 KAGNFK-TIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI  304 (441)
T ss_dssp             HTTCCB-CCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE
T ss_pred             cCCCEE-EeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE
Confidence            112222 223467778888777777888876554 4789999999876554 444 5999997542210        011


Q ss_pred             cCCc---ceEEEEEEcCCC-EEEEEeCCCcEEEEecC
Q psy8895         410 PGHN---AIINSICVNNEG-VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       410 ~~h~---~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~  442 (479)
                      .++.   -...--.|+++| .+.|...|+.|..|++.
T Consensus       305 ~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         305 VAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             EECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             EeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence            1111   112224788888 67888899999999974

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.87  E-value=1.9e-06  Score=76.67  Aligned_cols=218  Identities=11%  Similarity=0.202  Sum_probs=143.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC------CcCEEEEEEcCCC-CEEEEE-ECCCcEEEEECCCCC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH------VGSVRGLTVSPRH-PYLFSC-GDDRTVKCWDLEYNK  294 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h------~~~v~~v~~~~~~-~~l~s~-~~d~~i~~wd~~~~~  294 (479)
                      ..++++++|+.+++-..++.|++||.+ |+.+..+...      ...-..+++.++. ..++.. +.++.|..++... .
T Consensus        26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~  103 (279)
T d1q7fa_          26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-Q  103 (279)
T ss_dssp             EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-C
T ss_pred             cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc-c
Confidence            688999999998888888899999965 6666665321      1123455655543 334333 4456777776532 2


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCC------------------CCCCCeEEEEeCCCcEEE
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSA------------------TEESHPVITGSHDCTIRL  356 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~------------------~~~~~~l~sgs~d~~v~i  356 (479)
                      ..... ..........+++.+++..+++....+.+.+++.....                  ......+++....+.|++
T Consensus       104 ~~~~~-~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         104 FVRKF-GATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             EEEEE-CTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ceeec-CCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeeccccceee
Confidence            11111 11223456778888888887777777777776653221                  012234556666778888


Q ss_pred             EECCCCeeEEEEc--cCCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeec--CCcceEEEEEEcCCCEEEEE
Q psy8895         357 WDLAAGKSLCTLT--NHKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLP--GHNAIINSICVNNEGVLVSG  430 (479)
Q Consensus       357 wd~~~~~~~~~~~--~h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~--~h~~~v~~l~~~~~~~l~sg  430 (479)
                      ||.. ++.+.++.  +.......|++++++.++++-..+  .|.+++ .+|+.+.++.  ........+++.+++.|+.+
T Consensus       183 ~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~  260 (279)
T d1q7fa_         183 FNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVLA  260 (279)
T ss_dssp             EETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEEE
T ss_pred             eecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE
Confidence            9865 56666663  344457899999999988876543  388887 4688776653  23345788999999977777


Q ss_pred             eCCCcEEEEecCCCe
Q psy8895         431 ADNGTMCFWDWRTGY  445 (479)
Q Consensus       431 ~~dg~i~lWd~~~~~  445 (479)
                      +.+.+|++|...+..
T Consensus       261 ~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         261 SKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ETTTEEEEEECSCCC
T ss_pred             eCCCeEEEEEeeeec
Confidence            789999999987653

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.74  E-value=1.4e-06  Score=78.69  Aligned_cols=208  Identities=8%  Similarity=0.015  Sum_probs=135.6

Q ss_pred             cEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccC-C
Q psy8895         221 WVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQ-P  299 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~  299 (479)
                      .+..++++|||+++++...++.|..|+....  ...+......+.+++|+++|+++++...++.+..++......... .
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~  106 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  106 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeec
Confidence            5788999999999999999999888885533  234445667889999999999988888888888887643322111 1


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC--------------------------CCCCeEEEEeCCCc
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT--------------------------EESHPVITGSHDCT  353 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~--------------------------~~~~~l~sgs~d~~  353 (479)
                      ...........+.+++++..+++.+..+.+..++......                          .....+++.+..+.
T Consensus       107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~  186 (302)
T d2p4oa1         107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKML  186 (302)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTE
T ss_pred             cccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCe
Confidence            1112334577888999998888877777777666543210                          01123456667778


Q ss_pred             EEEEECCCCeeEEE--EccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeE--EeeecCCcceEEEEEE---cCCC
Q psy8895         354 IRLWDLAAGKSLCT--LTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKF--IQNLPGHNAIINSICV---NNEG  425 (479)
Q Consensus       354 v~iwd~~~~~~~~~--~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~--~~~~~~h~~~v~~l~~---~~~~  425 (479)
                      |..+++........  ..........+++++++.++++...+ .|..++.. ++.  +......-...++++|   ++|+
T Consensus       187 i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~  265 (302)
T d2p4oa1         187 LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC  265 (302)
T ss_dssp             EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred             EEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence            88787765432211  11122345679999999988877655 58888764 433  2333333345788999   5566


Q ss_pred             -EEEEEe
Q psy8895         426 -VLVSGA  431 (479)
Q Consensus       426 -~l~sg~  431 (479)
                       .|..++
T Consensus       266 ~~Lyvtt  272 (302)
T d2p4oa1         266 TAIYVVT  272 (302)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEC
Confidence             554443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=3.5e-06  Score=74.07  Aligned_cols=214  Identities=10%  Similarity=0.080  Sum_probs=128.0

Q ss_pred             EEEEEcCCCcEEEEE-eCCCeEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCCC
Q psy8895         223 RCVAVEPGNEWFATG-SADKIIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQPG  300 (479)
Q Consensus       223 ~~~~~~~~g~~l~sg-s~d~~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~  300 (479)
                      ..++++++|+..++. +..+.+..++........ ...+. .....+++++++..+++....+.+++++-........  
T Consensus        17 ~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~--   93 (260)
T d1rwia_          17 SGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP--   93 (260)
T ss_dssp             EEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC--
T ss_pred             CEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee--
Confidence            588999999966654 455677776655433222 22222 2346789999998877766666666665443332221  


Q ss_pred             CCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-----------------CCCCeEEEEeCCCcEEEEECCCCe
Q psy8895         301 SMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-----------------EESHPVITGSHDCTIRLWDLAAGK  363 (479)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----------------~~~~~l~sgs~d~~v~iwd~~~~~  363 (479)
                       .........++++++++..++-.....+..++......                 .....+++...++.|..+|.....
T Consensus        94 -~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 -FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             -CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             -eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence             12234577899999888777766666666665432110                 123445566667778888877543


Q ss_pred             eEEEEccCCCceEEEEEeCCCcEEEEEcCCc-EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEe
Q psy8895         364 SLCTLTNHKKSVRSVALHPTLYMFASASPDN-IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWD  440 (479)
Q Consensus       364 ~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d~-i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd  440 (479)
                      ........-.....|++++++.++++..... +..++.............-.....+++++++ ++++-..+++|+..+
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            3322223345568899999999998887664 7777654433221112223456789999887 556655566665444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.58  E-value=3.3e-07  Score=86.05  Aligned_cols=199  Identities=10%  Similarity=0.061  Sum_probs=123.0

Q ss_pred             EEEEeCCCeEEEEECCCCceEEEEec------------------------------CCcCEEEEEEcCCCCEEEEE-ECC
Q psy8895         234 FATGSADKIIKVWDLATGKLKLSLTG------------------------------HVGSVRGLTVSPRHPYLFSC-GDD  282 (479)
Q Consensus       234 l~sgs~d~~i~iWd~~~~~~~~~~~~------------------------------h~~~v~~v~~~~~~~~l~s~-~~d  282 (479)
                      ++||+.+|.|++||+.+++.++.+.-                              |........++|||++++.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67888999999999999988777532                              22334455567899988665 467


Q ss_pred             CcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCE--EEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECC
Q psy8895         283 RTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSR--LITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLA  360 (479)
Q Consensus       283 ~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~  360 (479)
                      +.|.++|+++.+..... ..........+.|+|+++.  ++..+.+ .+.+-......... ..      -..+..+|..
T Consensus        94 ~rVavIDl~t~k~~~ii-~iP~g~gphgi~~spdg~t~YV~~~~~~-~v~~~~dg~~~~~~-~~------~~~~~~iD~~  164 (441)
T d1qnia2          94 TRVARIRLDIMKTDKIT-HIPNVQAIHGLRLQKVPKTNYVFCNAEF-VIPQPNDGTDFSLD-NS------YTMFTAIDAE  164 (441)
T ss_dssp             TEEEEEETTTTEEEEEE-ECTTCCCEEEEEECCSSBCCEEEEEECS-CEESSCSSSCCCGG-GE------EEEEEEEETT
T ss_pred             CEEEEEECCCCcEeeEE-ecCCCCCccceEEeccCCEEEEEeccCC-cccccCcccccccc-cc------cceEEeecCc
Confidence            89999999876543211 1223456788999998874  4333332 22210000000000 00      0235567887


Q ss_pred             CCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC------------------------------------------cEEEE
Q psy8895         361 AGKSLCTLTNHKKSVRSVALHPTLYMFASASPD------------------------------------------NIKQW  398 (479)
Q Consensus       361 ~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d------------------------------------------~i~~w  398 (479)
                      +.+...++... .....++++|+++.+..++.+                                          .+.++
T Consensus       165 t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd  243 (441)
T d1qnia2         165 TMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVD  243 (441)
T ss_dssp             TCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred             cceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEE
Confidence            77777666543 346778888888766555422                                          12334


Q ss_pred             eCCCCeEEeeecCCcceEEEEEEcCCC-E-EEEEeCCCcEEEEecCC
Q psy8895         399 KCPEGKFIQNLPGHNAIINSICVNNEG-V-LVSGADNGTMCFWDWRT  443 (479)
Q Consensus       399 ~~~~~~~~~~~~~h~~~v~~l~~~~~~-~-l~sg~~dg~i~lWd~~~  443 (479)
                      +....+.+..++..+. ...+.++||| + ++++..|++|.+||+++
T Consensus       244 ~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         244 GRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             cccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence            3444445555555443 3567889999 4 57888999999999865

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.56  E-value=4.1e-05  Score=69.04  Aligned_cols=223  Identities=11%  Similarity=0.149  Sum_probs=138.6

Q ss_pred             ccEEEEEEcCCCcEEEEEeC-------CCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEEEECCCcEEEE
Q psy8895         220 GWVRCVAVEPGNEWFATGSA-------DKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFSCGDDRTVKCW  288 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~-------d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~~~d~~i~~w  288 (479)
                      ......+|.++|+++++...       ++.|..||..++.........    .+.-..++|++++..++.+...+.+...
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence            34577899999998776433       467888998887654332211    1235689999999888877777778888


Q ss_pred             ECCCCCcccCCCCCC--CCCCeEEEEEeCCCCEEEEEeC---------------CCeEEEEeCCCCCC------------
Q psy8895         289 DLEYNKAPVQPGSMD--SESGIFSMTFDNSGSRLITTEA---------------DKTVKLYKEDDSAT------------  339 (479)
Q Consensus       289 d~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~---------------d~~i~~~~~~~~~~------------  339 (479)
                      |.+...........+  .-.....+.++++|...++...               .+.+..++.+....            
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pNGi  177 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPNGI  177 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEEEE
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceeeee
Confidence            886543222111111  1123567888998887666422               12233232221100            


Q ss_pred             ---CCC-----CeEEEEeCCCcEEEEECCCCeeEE------EEcc-CCCceEEEEEeCCCcEEEEEcC-CcEEEEeCCCC
Q psy8895         340 ---EES-----HPVITGSHDCTIRLWDLAAGKSLC------TLTN-HKKSVRSVALHPTLYMFASASP-DNIKQWKCPEG  403 (479)
Q Consensus       340 ---~~~-----~~l~sgs~d~~v~iwd~~~~~~~~------~~~~-h~~~v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~  403 (479)
                         ...     .+.++-+..+.|..||+.....+.      .+.. +......+++.+++.++++... +.|.+++...+
T Consensus       178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g  257 (314)
T d1pjxa_         178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG  257 (314)
T ss_dssp             EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred             EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence               011     133444567778888765432222      2221 1223567899999998877654 46999998877


Q ss_pred             eEEeeecCCcceEEEEEEcCCC--EEEEEeCCCcEEEEecC
Q psy8895         404 KFIQNLPGHNAIINSICVNNEG--VLVSGADNGTMCFWDWR  442 (479)
Q Consensus       404 ~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~  442 (479)
                      +....+.......++++|.+++  .+++.+.+++|.-.++.
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            7766666666678899999987  45777788888777755

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.49  E-value=0.00021  Score=64.30  Aligned_cols=215  Identities=11%  Similarity=0.119  Sum_probs=128.1

Q ss_pred             CCCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECC----CcEEEEECCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLEY  292 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~~  292 (479)
                      .....+..++|.++|++.++-...+.|..|+..++.....+.........++++++|+++++...+    +.+...+...
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            334456789999999988887788999999988877666555566678899999999887765432    2344444433


Q ss_pred             CCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         293 NKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       293 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ..................+.++++|...++.....          ...         ..+.+..++.... .+..+...-
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~----------~~~---------~~g~v~~~~~dg~-~~~~~~~~~  176 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY----------STN---------PLGGVYYVSPDFR-TVTPIIQNI  176 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB----------TTB---------CCEEEEEECTTSC-CEEEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccc----------ccc---------CcceeEEEecccc-eeEEEeecc
Confidence            32211111112234567788888887555432110          000         0112333333222 222221122


Q ss_pred             CceEEEEEeCCCc-EEEEEcCC-cEEEEeCCC-CeEEe-------eecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEec
Q psy8895         373 KSVRSVALHPTLY-MFASASPD-NIKQWKCPE-GKFIQ-------NLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDW  441 (479)
Q Consensus       373 ~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~~~-~~~~~-------~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~  441 (479)
                      ...+.|+|+|++. ++++-+.. .|..+++.. +....       ...........+++..+| +.++....+.|.++| 
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-
Confidence            3457899999986 44555443 588887643 21111       111222335678999888 667777889999999 


Q ss_pred             CCCeEEEEEEE
Q psy8895         442 RTGYNFQRLQV  452 (479)
Q Consensus       442 ~~~~~~~~~~~  452 (479)
                      ..|+.+.++.+
T Consensus       256 p~G~~l~~i~~  266 (319)
T d2dg1a1         256 KRGYPIGQILI  266 (319)
T ss_dssp             TTSCEEEEEEC
T ss_pred             CCCcEEEEEeC
Confidence            57888888765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=0.0004  Score=61.05  Aligned_cols=156  Identities=14%  Similarity=0.183  Sum_probs=102.3

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEE--ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCccc
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSL--TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPV  297 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~  297 (479)
                      .....+++.++|.++++....+.+.+++.. ++.+..+  ..+......+++.+++..+++....+.|++||... +...
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G-~~~~  191 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLR  191 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEE
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceeeeecCC-ceee
Confidence            345678888999988888877888888854 5555554  33456778899999998888888889999999753 2222


Q ss_pred             CCCCCCCCCCeEEEEEeCCCCEEEEEeC-CCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc--CCCc
Q psy8895         298 QPGSMDSESGIFSMTFDNSGSRLITTEA-DKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN--HKKS  374 (479)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~--h~~~  374 (479)
                      .............++++++++.+++-.. ...|.+|                         + ..++.+.++..  ....
T Consensus       192 ~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f-------------------------~-~~G~~~~~~~~~~~~~~  245 (279)
T d1q7fa_         192 QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF-------------------------T-QDGQLISALESKVKHAQ  245 (279)
T ss_dssp             EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE-------------------------C-TTSCEEEEEEESSCCSC
T ss_pred             eecccccccCCcccccccCCeEEEEECCCCcEEEEE-------------------------C-CCCCEEEEEeCCCCCCC
Confidence            2211122344677888888875554332 2234444                         3 22344444321  1234


Q ss_pred             eEEEEEeCCCcEEEEEcCCcEEEEeCCCC
Q psy8895         375 VRSVALHPTLYMFASASPDNIKQWKCPEG  403 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~d~i~~w~~~~~  403 (479)
                      ...|++.|++.++++..+..|++|.....
T Consensus       246 p~~vav~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         246 CFDVALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEEEEEETTTEEEEEETTTEEEEEECSCC
T ss_pred             EeEEEEeCCCcEEEEeCCCeEEEEEeeee
Confidence            68899999999888776656999987654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.34  E-value=8.3e-05  Score=64.93  Aligned_cols=203  Identities=10%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCCC---eEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEEC
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSADK---IIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDL  290 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d~---~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~  290 (479)
                      +..+...+.+-+|||||+.||-.....   .+.+.+...+.. ..+..+........|+|++..++.... ++...++..
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~  112 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM  112 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence            334566788899999999998765543   355666666554 344556778889999999998886553 333333322


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCC--cEEEEECCCCeeEEEE
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDC--TIRLWDLAAGKSLCTL  368 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~--~v~iwd~~~~~~~~~~  368 (479)
                      ......... ............+++.+..+.                        ++...++  .|...++..+. ...+
T Consensus       113 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~g~~~i~~~~~~~~~-~~~~  166 (269)
T d2hqsa1         113 DLASGQIRQ-VTDGRSNNTEPTWFPDSQNLA------------------------FTSDQAGRPQVYKVNINGGA-PQRI  166 (269)
T ss_dssp             ETTTCCEEE-CCCCSSCEEEEEECTTSSEEE------------------------EEECTTSSCEEEEEETTSSC-CEEC
T ss_pred             cccccccee-eeeccccccccccccccccce------------------------ecccccCCceEeeeeccccc-ceee
Confidence            111110000 001111222333334333222                        2222222  23444444432 2233


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCC--c--EEEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeC---CCcEEEEe
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPD--N--IKQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGAD---NGTMCFWD  440 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d--~--i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~---dg~i~lWd  440 (479)
                      ..+........++|++..++..+.+  .  +.+.+...+..  .+..+........++||| .|+-.+.   ...|.+++
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~  244 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVS  244 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEE
Confidence            3455667788999999877766544  2  44556555443  233344455677899999 5553332   34678899


Q ss_pred             cCCCeE
Q psy8895         441 WRTGYN  446 (479)
Q Consensus       441 ~~~~~~  446 (479)
                      +..+..
T Consensus       245 ~dg~~~  250 (269)
T d2hqsa1         245 TDGRFK  250 (269)
T ss_dssp             TTSCCE
T ss_pred             CCCCCE
Confidence            887654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.30  E-value=0.00041  Score=61.75  Aligned_cols=166  Identities=11%  Similarity=0.015  Sum_probs=99.9

Q ss_pred             EEEEEEcCCCcEEEEEeCCCeEEEEECCCC--ceEEEE-ecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcc--
Q psy8895         222 VRCVAVEPGNEWFATGSADKIIKVWDLATG--KLKLSL-TGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAP--  296 (479)
Q Consensus       222 v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~--~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~--  296 (479)
                      +.+++|+++|+++++...++.+..|+....  ...... .........+++.+++.++++-+.++.+..+|.......  
T Consensus        70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~  149 (302)
T d2p4oa1          70 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIW  149 (302)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeE
Confidence            467889999999998888888888776543  222111 223456789999999988888788888888887654311  


Q ss_pred             ------cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC-------------------CCCCeEEEEeCC
Q psy8895         297 ------VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSAT-------------------EESHPVITGSHD  351 (479)
Q Consensus       297 ------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-------------------~~~~~l~sgs~d  351 (479)
                            ..............+.++. +...++.+..+.+..++......                   .+..+.++...+
T Consensus       150 ~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~  228 (302)
T d2p4oa1         150 LEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY  228 (302)
T ss_dssp             EECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT
T ss_pred             ecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCC
Confidence                  0111111223345566654 34555666777787777543221                   123445555567


Q ss_pred             CcEEEEECCCCee-EEEEccCCCceEEEEE---eCCCcEEE
Q psy8895         352 CTIRLWDLAAGKS-LCTLTNHKKSVRSVAL---HPTLYMFA  388 (479)
Q Consensus       352 ~~v~iwd~~~~~~-~~~~~~h~~~v~~i~~---~~~~~~l~  388 (479)
                      +.|..++...... +......-...++++|   ++|++.|.
T Consensus       229 ~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         229 NSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             CCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             CcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            7777776654322 2233333345789999   56665443

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.20  E-value=0.00026  Score=65.05  Aligned_cols=217  Identities=12%  Similarity=0.045  Sum_probs=112.3

Q ss_pred             CCccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCCcc
Q psy8895         218 HLGWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DRTVKCWDLEYNKAP  296 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~  296 (479)
                      +.+.|....+.+++........+...++...    ....-......+.++.|+|||++++++.. ...|.+|+.......
T Consensus       105 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         105 PPYAVYANPFYKFAGYGNVFSVSETGKLEKN----VQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV  180 (365)
T ss_dssp             TTCCEEEEEESSSCCEEEEEEECTTCCEEEE----EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE
T ss_pred             CCCEEEEeEccCCCCcceeEeeeecceecCc----ccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce
Confidence            4566777777777665544433332222211    11111122335789999999998887754 457888876533221


Q ss_pred             cC---CCCCCCCCCeEEEEEeCCCCEEEEEe-CCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCC
Q psy8895         297 VQ---PGSMDSESGIFSMTFDNSGSRLITTE-ADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHK  372 (479)
Q Consensus       297 ~~---~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~  372 (479)
                      ..   ............+.|+|+++++.+.. .+++|.+|+.+......   +..   .+.+.++.............+.
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~  254 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP---VYT---HHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE---EEE---EEEEESSCTTCCCBCTTTSSBS
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceE---EEE---eeeecccccccccccccccccc
Confidence            11   11122345788999999998775443 45566666654321110   000   0000000000000000000122


Q ss_pred             CceEEEEEeCCCcEEEEEc--CCc-----EEEEeCCC-CeEEe-----eecCCcceEEEEEEcC-CC-EE-EEEeCCCcE
Q psy8895         373 KSVRSVALHPTLYMFASAS--PDN-----IKQWKCPE-GKFIQ-----NLPGHNAIINSICVNN-EG-VL-VSGADNGTM  436 (479)
Q Consensus       373 ~~v~~i~~~~~~~~l~s~s--~d~-----i~~w~~~~-~~~~~-----~~~~h~~~v~~l~~~~-~~-~l-~sg~~dg~i  436 (479)
                      .....+.++|+++.+.++.  ++.     +..|+... +....     ...........++++| +| +| ++...++.|
T Consensus       255 ~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v  334 (365)
T d1jofa_         255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             CCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeE
Confidence            3456789999998776553  222     66666543 22211     1122333456688887 56 44 555688999


Q ss_pred             EEEecCCC
Q psy8895         437 CFWDWRTG  444 (479)
Q Consensus       437 ~lWd~~~~  444 (479)
                      .+|+++..
T Consensus       335 ~v~~~~~~  342 (365)
T d1jofa_         335 EIYRWKDE  342 (365)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEeCC
Confidence            99987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.82  E-value=0.00088  Score=58.05  Aligned_cols=187  Identities=13%  Similarity=0.100  Sum_probs=104.2

Q ss_pred             EEecCCc--CEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEE
Q psy8895         256 SLTGHVG--SVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLY  332 (479)
Q Consensus       256 ~~~~h~~--~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~  332 (479)
                      .+.++..  .-..++++++|...++. +..+.+..++..........  .........+++++++...++....+.++++
T Consensus         6 ~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~   83 (260)
T d1rwia_           6 PFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP--FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLA   83 (260)
T ss_dssp             CCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC--CCSCCSCCCEEECTTCCEEEEETTTEEEEEC
T ss_pred             ecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec--cCCccCceEEEEcCCCCEEEeeeeeceeeee
Confidence            3444432  34789999999876654 45567777765433222111  1112234567888988877766666666655


Q ss_pred             eCCCCCCC-----CC-CeEEEEeCCCcEEEEECCCCeeE---------EEEc-cCCCceEEEEEeCCCcEEEEEcCC-cE
Q psy8895         333 KEDDSATE-----ES-HPVITGSHDCTIRLWDLAAGKSL---------CTLT-NHKKSVRSVALHPTLYMFASASPD-NI  395 (479)
Q Consensus       333 ~~~~~~~~-----~~-~~l~sgs~d~~v~iwd~~~~~~~---------~~~~-~h~~~v~~i~~~~~~~~l~s~s~d-~i  395 (479)
                      +.......     .. ..-++-..++.+.+-|....+..         .... ......+.++++|++.++++...+ .+
T Consensus        84 ~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i  163 (260)
T d1rwia_          84 AGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV  163 (260)
T ss_dssp             TTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred             eeccceeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccc
Confidence            43322110     01 11122334555555543322211         1111 112345789999998888776655 48


Q ss_pred             EEEeCCCCeEEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCC
Q psy8895         396 KQWKCPEGKFIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTG  444 (479)
Q Consensus       396 ~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~  444 (479)
                      ..++...................+++++++ ++++....+.|..++...+
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            888876544333323444556889999888 6667767788888876544

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.72  E-value=0.0033  Score=54.42  Aligned_cols=216  Identities=11%  Similarity=0.043  Sum_probs=112.4

Q ss_pred             EEcCC--CcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEEC-CC-----cEEEEECCCCCccc
Q psy8895         226 AVEPG--NEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGD-DR-----TVKCWDLEYNKAPV  297 (479)
Q Consensus       226 ~~~~~--g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~-d~-----~i~~wd~~~~~~~~  297 (479)
                      .++|+  |+.++..+. +.|-+.|+.+++.. .+..+.+.+...+|||||+.|+-... ++     .|.+.+...++...
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            35688  988887654 56777799888764 56667777889999999998885432 22     36666665554321


Q ss_pred             CCCC----CCCCCCeEEEEEeCCCCEEEEEeCCC------eEEEEeCCCCCC---CCCCeEEEEeCCCcEEEEEC-----
Q psy8895         298 QPGS----MDSESGIFSMTFDNSGSRLITTEADK------TVKLYKEDDSAT---EESHPVITGSHDCTIRLWDL-----  359 (479)
Q Consensus       298 ~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~~~~~~~~~~---~~~~~l~sgs~d~~v~iwd~-----  359 (479)
                      ....    ...........|+|+++.++......      .+...+......   ...........|+...++..     
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            1100    01112345678999999887653321      122233221110   00000011112222222211     


Q ss_pred             -----------------CCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC--cEEEEeCCCCeEEeeecCCcceEEEEE
Q psy8895         360 -----------------AAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD--NIKQWKCPEGKFIQNLPGHNAIINSIC  420 (479)
Q Consensus       360 -----------------~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d--~i~~w~~~~~~~~~~~~~h~~~v~~l~  420 (479)
                                       ..... .....+........++++..++.....+  .|.++|..+++...........+  ..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~  239 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP--RH  239 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE--EE
T ss_pred             eeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeecCCCccc--cc
Confidence                             11111 1111222334445566665444443333  37777876665433222222233  35


Q ss_pred             EcCCC-EEEEEeCCCcEEEEecCCCeEE
Q psy8895         421 VNNEG-VLVSGADNGTMCFWDWRTGYNF  447 (479)
Q Consensus       421 ~~~~~-~l~sg~~dg~i~lWd~~~~~~~  447 (479)
                      ++||| .|+- ..++.|.++|+.+|+.-
T Consensus       240 ~SpDG~~I~f-~~~~~l~~~d~~~g~~~  266 (281)
T d1k32a2         240 LNTDGRRILF-SKGGSIYIFNPDTEKIE  266 (281)
T ss_dssp             EEESSSCEEE-EETTEEEEECTTTCCEE
T ss_pred             CcCCCCEEEE-EeCCEEEEEECCCCCEE
Confidence            78888 5554 44688999999988653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=97.70  E-value=0.0022  Score=58.59  Aligned_cols=104  Identities=9%  Similarity=0.102  Sum_probs=66.8

Q ss_pred             cEEEEEEcCCCcEEEEEeC-CCeEEEEECCCC-ceE--EEEe--cCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCC
Q psy8895         221 WVRCVAVEPGNEWFATGSA-DKIIKVWDLATG-KLK--LSLT--GHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYN  293 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs~-d~~i~iWd~~~~-~~~--~~~~--~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~  293 (479)
                      .+.++.|+|+|++++.++. ...|.+|+.... ...  ....  ......+.++|+|++++++.. -.+++|.+|++...
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            3678999999998887764 357888876533 222  1222  223467899999999987654 46789999998654


Q ss_pred             Cccc---------CC--------CCCCCCCCeEEEEEeCCCCEEEEEe
Q psy8895         294 KAPV---------QP--------GSMDSESGIFSMTFDNSGSRLITTE  324 (479)
Q Consensus       294 ~~~~---------~~--------~~~~~~~~i~~~~~~~~~~~l~~~~  324 (479)
                      ....         ..        ...........+.++|++++++++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            3210         00        0001112345788899999887764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.68  E-value=0.016  Score=51.50  Aligned_cols=187  Identities=10%  Similarity=0.060  Sum_probs=94.5

Q ss_pred             EEEEEcCCCcEEEEEeCC----CeEEEEECCCCceEEEEecC--CcCEEEEEEcCCCCEEEEEECC------CcEEEEEC
Q psy8895         223 RCVAVEPGNEWFATGSAD----KIIKVWDLATGKLKLSLTGH--VGSVRGLTVSPRHPYLFSCGDD------RTVKCWDL  290 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d----~~i~iWd~~~~~~~~~~~~h--~~~v~~v~~~~~~~~l~s~~~d------~~i~~wd~  290 (479)
                      ..++++++|+++++...+    +.+...+...+.........  ......+++.++|++.++-...      +.+..++.
T Consensus        85 ~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~  164 (319)
T d2dg1a1          85 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP  164 (319)
T ss_dssp             EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred             eEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEec
Confidence            456677777776665432    23444444444433333211  2346788999999877663221      22333333


Q ss_pred             CCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEE-eCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEc
Q psy8895         291 EYNKAPVQPGSMDSESGIFSMTFDNSGSRLITT-EADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLT  369 (479)
Q Consensus       291 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~  369 (479)
                      .........   ..-.....++|+++++.+..+ +..+.|..|+.+.....             ....    ........
T Consensus       165 dg~~~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~-------------~~~~----~~~~~~~~  224 (319)
T d2dg1a1         165 DFRTVTPII---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVT-------------IQPF----GATIPYYF  224 (319)
T ss_dssp             TSCCEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSS-------------EEEE----EEEEEEEC
T ss_pred             ccceeEEEe---eccceeeeeeeccccceEEEecccCCceEEEEEcCCCce-------------eccc----cceeeecc
Confidence            221111000   011223457777777655333 33444444443221000             0000    00001111


Q ss_pred             cCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeec------CCcceEEEEEEcCCC-EEEEE
Q psy8895         370 NHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLP------GHNAIINSICVNNEG-VLVSG  430 (479)
Q Consensus       370 ~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~------~h~~~v~~l~~~~~~-~l~sg  430 (479)
                      .....-..+++++++.++++...+ .|.+++. +|+.+..+.      ++...++++++.++. .++..
T Consensus       225 ~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t  292 (319)
T d2dg1a1         225 TGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIIC  292 (319)
T ss_dssp             CSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred             CCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence            112234678999999988877654 5999994 788876653      344567888998776 44433

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.62  E-value=0.0028  Score=56.46  Aligned_cols=174  Identities=6%  Similarity=0.057  Sum_probs=102.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC----cCEEEEEEcCCCCEEEEEEC---------------CC
Q psy8895         223 RCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV----GSVRGLTVSPRHPYLFSCGD---------------DR  283 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~----~~v~~v~~~~~~~~l~s~~~---------------d~  283 (479)
                      ..++|.++|+.++.+...+.|...+...+..........    ...+.+++.++|.+.++-..               ++
T Consensus        74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G  153 (314)
T d1pjxa_          74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCc
Confidence            578899999888888777778888876654322111111    13577899999988776422               12


Q ss_pred             cEEEEECCCCCcccCCCCCCCCCCeEEEEEeCCCC-----EEEEEeCCCeEEEEeCCCCC--------------------
Q psy8895         284 TVKCWDLEYNKAPVQPGSMDSESGIFSMTFDNSGS-----RLITTEADKTVKLYKEDDSA--------------------  338 (479)
Q Consensus       284 ~i~~wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~~~~~~~~~--------------------  338 (479)
                      .|..++.+. +.....   .......-++|++++.     ..++.+..+.|..|+.....                    
T Consensus       154 ~v~~~~~dg-~~~~~~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd  229 (314)
T d1pjxa_         154 SIYCFTTDG-QMIQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD  229 (314)
T ss_dssp             EEEEECTTS-CEEEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred             eEEEEeecC-ceeEee---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccce
Confidence            233333221 110000   0011223466776653     33444566667666532210                    


Q ss_pred             ----CCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCc-EEEEEcCC-cEEEEeC
Q psy8895         339 ----TEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLY-MFASASPD-NIKQWKC  400 (479)
Q Consensus       339 ----~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~-~l~s~s~d-~i~~w~~  400 (479)
                          -.+.++.++....+.|.+||.+.++.+..+..+....++++|.|++. ++++.+.+ .|...+.
T Consensus       230 GiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             eeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence                01234455556678899999887777777766666789999999885 66766654 4666554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.003  Score=59.68  Aligned_cols=106  Identities=10%  Similarity=0.119  Sum_probs=66.6

Q ss_pred             EcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCC---cCEEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCC
Q psy8895         227 VEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHV---GSVRGLTVSPRHPYLFSCG---------DDRTVKCWDLEYNK  294 (479)
Q Consensus       227 ~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~---~~v~~v~~~~~~~~l~s~~---------~d~~i~~wd~~~~~  294 (479)
                      |.++++++.. ..+|.|.+||+.+++....+..+.   -.+....+|||+++++...         ..+.+.++|+.++.
T Consensus        24 W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~  102 (465)
T d1xfda1          24 WISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD  102 (465)
T ss_dssp             BSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC
T ss_pred             EeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCc
Confidence            4456665543 456789999999887654444332   2566788999999887653         34678899998765


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKE  334 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~  334 (479)
                      .............+....|+|+|+.++-.. ++.+.+.+.
T Consensus       103 ~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~  141 (465)
T d1xfda1         103 PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAH  141 (465)
T ss_dssp             CEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESS
T ss_pred             eeeccCccCCccccceeeeccCCceEEEEe-cceEEEEec
Confidence            432211112233455578899999877654 344444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.35  E-value=0.04  Score=48.06  Aligned_cols=190  Identities=12%  Similarity=0.044  Sum_probs=109.0

Q ss_pred             ccEEEEEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecC----CcCEEEEEEcCCCCEEEEEECC----CcEEEEECC
Q psy8895         220 GWVRCVAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGH----VGSVRGLTVSPRHPYLFSCGDD----RTVKCWDLE  291 (479)
Q Consensus       220 ~~v~~~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h----~~~v~~v~~~~~~~~l~s~~~d----~~i~~wd~~  291 (479)
                      ..+.++++.++|.++++ +.+ -+.++|..+++........    ...++.+.+.|+|.+.++...+    +.-.+|.+.
T Consensus        59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~  136 (295)
T d2ghsa1          59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA  136 (295)
T ss_dssp             SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeec
Confidence            45678888888887775 444 5888999988764433211    1257889999999877764321    233455543


Q ss_pred             CCCcccCCCCCCCCCCeEEEEEeCCCCEEEE-EeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEcc
Q psy8895         292 YNKAPVQPGSMDSESGIFSMTFDNSGSRLIT-TEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTN  370 (479)
Q Consensus       292 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~  370 (479)
                      .++.....   ........+.++++++.+.. .+..+.|..++.+.......                 ........+.+
T Consensus       137 ~g~~~~~~---~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~-----------------~~~~~~~~~~~  196 (295)
T d2ghsa1         137 KGKVTKLF---ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT-----------------GKAEVFIDSTG  196 (295)
T ss_dssp             TTEEEEEE---EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS-----------------SCCEEEEECTT
T ss_pred             CCcEEEEe---eccCCcceeeecCCCceEEEeecccceeeEeeecccccccc-----------------cceEEEeccCc
Confidence            33221110   01112345667777665433 33344454444332111000                 00011122233


Q ss_pred             CCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeeecCCcceEEEEEEc-CCC--EEEEEeC
Q psy8895         371 HKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNLPGHNAIINSICVN-NEG--VLVSGAD  432 (479)
Q Consensus       371 h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~~h~~~v~~l~~~-~~~--~l~sg~~  432 (479)
                      ..+....+++++++.+.++...+ .|..+| ++|+.+..+.-....++++||- +|.  .++|...
T Consensus       197 ~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         197 IKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             SSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence            44567888999999988877554 599999 5788887776555578999995 454  4455443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.052  Score=46.13  Aligned_cols=180  Identities=14%  Similarity=0.078  Sum_probs=100.2

Q ss_pred             ecCCCccEEEEEEcCCCcEEEEEeCC-Ce--EEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEE-EECCCc--EEEE
Q psy8895         215 ISGHLGWVRCVAVEPGNEWFATGSAD-KI--IKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFS-CGDDRT--VKCW  288 (479)
Q Consensus       215 ~~~h~~~v~~~~~~~~g~~l~sgs~d-~~--i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s-~~~d~~--i~~w  288 (479)
                      +..+.+......++|+|+.++..+.. +.  +..+........ .............+++++..++. ...++.  |.+.
T Consensus        78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~  156 (269)
T d2hqsa1          78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV  156 (269)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EeeeecccccceecCCCCeeeEeeecCCccceeecccccccce-eeeeccccccccccccccccceecccccCCceEeee
Confidence            34566778889999999988876643 22  223333322222 22223334445567777665544 344554  4444


Q ss_pred             ECCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEE
Q psy8895         289 DLEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTL  368 (479)
Q Consensus       289 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~  368 (479)
                      ++........   ...........++|++..++..+.++.                      ...+.+.|...+..  .+
T Consensus       157 ~~~~~~~~~~---~~~~~~~~~~~~spdg~~~~~~~~~~~----------------------~~~i~~~~~~~~~~--~~  209 (269)
T d2hqsa1         157 NINGGAPQRI---TWEGSQNQDADVSSDGKFMVMVSSNGG----------------------QQHIAKQDLATGGV--QV  209 (269)
T ss_dssp             ETTSSCCEEC---CCSSSEEEEEEECTTSSEEEEEEECSS----------------------CEEEEEEETTTCCE--EE
T ss_pred             ecccccceee---ecccccccccccccccceeEEEeecCC----------------------ceeeeEeecccccc--eE
Confidence            5544322211   112334556778888887665433221                      01233344443332  33


Q ss_pred             ccCCCceEEEEEeCCCcEEEEEcCC----cEEEEeCCCCeEEeeecCCcceEEEEEEcC
Q psy8895         369 TNHKKSVRSVALHPTLYMFASASPD----NIKQWKCPEGKFIQNLPGHNAIINSICVNN  423 (479)
Q Consensus       369 ~~h~~~v~~i~~~~~~~~l~s~s~d----~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~  423 (479)
                      ..+........|+||++.|+-.+..    .+.++++..+.. ..+....+.+...+++|
T Consensus       210 ~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         210 LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEEECC
T ss_pred             eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEEeCC
Confidence            3345566788999999877644322    378899876654 44656667777778887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.09  E-value=0.076  Score=46.18  Aligned_cols=204  Identities=15%  Similarity=0.117  Sum_probs=120.9

Q ss_pred             EEEEEcC-CCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC--
Q psy8895         223 RCVAVEP-GNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP--  299 (479)
Q Consensus       223 ~~~~~~~-~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--  299 (479)
                      .+-.|.+ ++.+..+=-..+.|.-||..+++.. .+. ....+.++++.+++.++++ +.+ .+..+|..+++.....  
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            3455665 4455555446688999999888653 222 3456789999999877665 444 5888998876532211  


Q ss_pred             CCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEE
Q psy8895         300 GSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVA  379 (479)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~  379 (479)
                      ........+..+.++++|...++......                     ..+.-.+|.+..++....+.. -..-+.++
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~---------------------~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~  154 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKA---------------------ETGAGSIYHVAKGKVTKLFAD-ISIPNSIC  154 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTC---------------------CTTCEEEEEEETTEEEEEEEE-ESSEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccc---------------------cccceeEeeecCCcEEEEeec-cCCcceee
Confidence            11112235677888888876554332110                     011223344444443333322 22347889


Q ss_pred             EeCCCcEE-EEEcCC-cEEEEeCCC--C----e--EEeeecCCcceEEEEEEcCCC-EEEEEeCCCcEEEEecCCCeEEE
Q psy8895         380 LHPTLYMF-ASASPD-NIKQWKCPE--G----K--FIQNLPGHNAIINSICVNNEG-VLVSGADNGTMCFWDWRTGYNFQ  448 (479)
Q Consensus       380 ~~~~~~~l-~s~s~d-~i~~w~~~~--~----~--~~~~~~~h~~~v~~l~~~~~~-~l~sg~~dg~i~lWd~~~~~~~~  448 (479)
                      +++++..+ .+.+.. .|..+++..  +    +  ......+..+....+++..+| +.++.-..+.|..|| ..|+.++
T Consensus       155 ~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~  233 (295)
T d2ghsa1         155 FSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIA  233 (295)
T ss_dssp             ECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEE
T ss_pred             ecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEee
Confidence            99998644 444444 477776532  1    1  122334455678889999888 555555678899999 5688888


Q ss_pred             EEEEe
Q psy8895         449 RLQVR  453 (479)
Q Consensus       449 ~~~~~  453 (479)
                      ++++.
T Consensus       234 ~i~lP  238 (295)
T d2ghsa1         234 RYEVP  238 (295)
T ss_dssp             EEECS
T ss_pred             EecCC
Confidence            88654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.013  Score=55.09  Aligned_cols=185  Identities=9%  Similarity=0.023  Sum_probs=107.0

Q ss_pred             cEEEEEEcCCCcEEEEEe---------CCCeEEEEECCCCceEEEEe--cCCcCEEEEEEcCCCCEEEEEECCCcEEEEE
Q psy8895         221 WVRCVAVEPGNEWFATGS---------ADKIIKVWDLATGKLKLSLT--GHVGSVRGLTVSPRHPYLFSCGDDRTVKCWD  289 (479)
Q Consensus       221 ~v~~~~~~~~g~~l~sgs---------~d~~i~iWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd  289 (479)
                      .+....|+||+++++...         ..+.+.++|+.++.......  .....+....|||||+.++-.. ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            345567899999887764         35678899999887643221  2233455678999999988764 56777777


Q ss_pred             CCCCCcccCCCCCCCC-----------------CCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCC---CCCCe---E
Q psy8895         290 LEYNKAPVQPGSMDSE-----------------SGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSAT---EESHP---V  345 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~-----------------~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~---~~~~~---l  345 (479)
                      ...+....... .+..                 ..-..+.|+|+|+.++....| ..+..+.......   +....   -
T Consensus       141 ~~~~~~~~lt~-~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         141 HVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             cCCCceEEEec-ccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            65443321110 0111                 112467799999999877543 3344443221110   00000   0


Q ss_pred             EEEeC--CCcEEEEECCCCeeEEEE------ccCCCceEEEEEeCCCcEEEEEcCC-----cEEEEeCCCCeEEe
Q psy8895         346 ITGSH--DCTIRLWDLAAGKSLCTL------TNHKKSVRSVALHPTLYMFASASPD-----NIKQWKCPEGKFIQ  407 (479)
Q Consensus       346 ~sgs~--d~~v~iwd~~~~~~~~~~------~~h~~~v~~i~~~~~~~~l~s~s~d-----~i~~w~~~~~~~~~  407 (479)
                      ..|..  ...+.++|+..+......      ......+..+.|+|++.+++...+.     .+.++|..+++...
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~  294 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK  294 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE
Confidence            01111  125778898765432221      1223457889999999877665432     27778988887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.59  E-value=0.53  Score=39.47  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=43.9

Q ss_pred             EecCCCccEEEEEEcCCCcEEEEEeC-CC-----eEEEEECCCCceEEEEe------cCCcCEEEEEEcCCCCEEEEE
Q psy8895         214 VISGHLGWVRCVAVEPGNEWFATGSA-DK-----IIKVWDLATGKLKLSLT------GHVGSVRGLTVSPRHPYLFSC  279 (479)
Q Consensus       214 ~~~~h~~~v~~~~~~~~g~~l~sgs~-d~-----~i~iWd~~~~~~~~~~~------~h~~~v~~v~~~~~~~~l~s~  279 (479)
                      .|..+.+.+...+|+|||+.||-.+. ++     .|.+.+..+++......      ..........|+|+++.++..
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            45556777889999999999886542 21     36667777775543211      112345678899999988764

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.46  E-value=0.67  Score=44.11  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=26.3

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         423 NEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       423 ~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      .+++++.|+.||.++-+|.+||+.+=++++.
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~  504 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMP  504 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECC
Confidence            4667778999999999999999999766555

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.20  E-value=0.78  Score=39.07  Aligned_cols=206  Identities=13%  Similarity=0.149  Sum_probs=116.1

Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCCcccCC---CC
Q psy8895         225 VAVEPGNEWFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNKAPVQP---GS  301 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~  301 (479)
                      .-.+|..+.||--+ ..++.++|+++.+.++.+...+ .|.-=.|-.+. .|+-. .+..|+-|+++....+...   ..
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~-~L~lV-T~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLN-TVALV-TDNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEESSSS-EEEEE-CSSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-CcEEEEecCCC-EEEEE-cCCceEEEcccCCCCchhhhhhcc
Confidence            34567777766655 5689999999999888877665 44444554332 34333 3467999999653333221   11


Q ss_pred             CCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEe
Q psy8895         302 MDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALH  381 (479)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~  381 (479)
                      .-....|..-..+++.+.++..+-.      .       .... +    .|.+.+|..+.+ .-..+++|......+.+.
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~------~-------~~~~-i----~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~  204 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGIS------A-------QQNR-V----VGAMQLYSVDRK-VSQPIEGHAASFAQFKME  204 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEE------E-------ETTE-E----EEEEEEEETTTT-EEEEECCSEEEEEEECCT
T ss_pred             cccCceEEEEEECCCCCEEEEEeEe------c-------CCCc-e----eEEEEEEEeccC-cCccccceeeeeEEEEcC
Confidence            1124567777778888876543211      0       0011 1    256888887754 345667775554444433


Q ss_pred             CC---CcEEEEEcC----CcEEEEeCCCC---eE---E--eeec----CCcceEEEEEEcC-CCEEEEEeCCCcEEEEec
Q psy8895         382 PT---LYMFASASP----DNIKQWKCPEG---KF---I--QNLP----GHNAIINSICVNN-EGVLVSGADNGTMCFWDW  441 (479)
Q Consensus       382 ~~---~~~l~s~s~----d~i~~w~~~~~---~~---~--~~~~----~h~~~v~~l~~~~-~~~l~sg~~dg~i~lWd~  441 (479)
                      .+   ..+|+-+..    .++.+.++...   ..   .  ..+.    .-.+..-++-+++ .|.+..-..-|.|.+||+
T Consensus       205 g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDl  284 (327)
T d1utca2         205 GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDL  284 (327)
T ss_dssp             TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred             CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEc
Confidence            22   133333322    24667776432   11   1  1111    1123334455554 456666678899999999


Q ss_pred             CCCeEEEEEEEe
Q psy8895         442 RTGYNFQRLQVR  453 (479)
Q Consensus       442 ~~~~~~~~~~~~  453 (479)
                      .||.++.+-+..
T Consensus       285 eTgt~i~~nRIs  296 (327)
T d1utca2         285 ETGTCIYMNRIS  296 (327)
T ss_dssp             TTCCEEEEEECC
T ss_pred             ccccEEEEeecC
Confidence            999998754443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.28  E-value=2  Score=40.89  Aligned_cols=55  Identities=15%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             EEEEeCCCCeEEeeec----CCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         395 IKQWKCPEGKFIQNLP----GHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~----~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.-||..+|+.+-...    ...+.+    ....+++..|+.||.++-+|.+||+.+=++++.
T Consensus       455 l~A~D~~TG~~~W~~~~~~~~~gg~l----sTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         455 IKAYNAITGDYKWEKMERFAVWGGTM----ATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCSBCE----EETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEeCCCCceecccCCCCCCcccee----EecCCEEEEECCCCeEEEEECCCCcEeeEEECC
Confidence            5556777776643221    112222    124567778999999999999999999776654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=93.81  E-value=1.1  Score=39.75  Aligned_cols=72  Identities=10%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             EEEEEcCCCcEEEEEeCC-CeEEEEECCCCceEEEEecCC-cCEEEEEEcCCCCEEEEEECC------CcEEEEECCCCC
Q psy8895         223 RCVAVEPGNEWFATGSAD-KIIKVWDLATGKLKLSLTGHV-GSVRGLTVSPRHPYLFSCGDD------RTVKCWDLEYNK  294 (479)
Q Consensus       223 ~~~~~~~~g~~l~sgs~d-~~i~iWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~l~s~~~d------~~i~~wd~~~~~  294 (479)
                      ...++.++|++++.|+.+ ..+.+||..+......-.... ..-..++..+|++.++.++.+      ..+.+||+.+..
T Consensus        79 ~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          79 PGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             CEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             eEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            355678899999998766 589999998876543211111 122456777899988887643      468899987654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.46  E-value=2.5  Score=35.24  Aligned_cols=207  Identities=8%  Similarity=-0.020  Sum_probs=118.2

Q ss_pred             CCCccEEEEEEcCCCcEEEEE-eCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCC
Q psy8895         217 GHLGWVRCVAVEPGNEWFATG-SADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSC-GDDRTVKCWDLEYNK  294 (479)
Q Consensus       217 ~h~~~v~~~~~~~~g~~l~sg-s~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~-~~d~~i~~wd~~~~~  294 (479)
                      .+...+.+++|.+..+.+.-. ..++.|+..++..+.....+..-...+.+++++.-+..|.-+ ...+.|.+.++....
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~  112 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ  112 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCce
Confidence            344567889998877665544 456788888887665544444434568899998766666544 456789999886543


Q ss_pred             cccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC-CeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCeeEEEEccCCC
Q psy8895         295 APVQPGSMDSESGIFSMTFDNSGSRLITTEAD-KTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKSLCTLTNHKK  373 (479)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~~~~~~~h~~  373 (479)
                      .....  .........++++|....+...... +..              .+.....||         ..........-.
T Consensus       113 ~~~l~--~~~l~~p~~l~vdp~~g~ly~t~~~~~~~--------------~I~r~~~dG---------~~~~~i~~~~~~  167 (263)
T d1npea_         113 RRVLF--DTGLVNPRGIVTDPVRGNLYWTDWNRDNP--------------KIETSHMDG---------TNRRILAQDNLG  167 (263)
T ss_dssp             CEEEE--CSSCSSEEEEEEETTTTEEEEEECCSSSC--------------EEEEEETTS---------CCCEEEECTTCS
T ss_pred             EEEEe--cccccCCcEEEEecccCcEEEeecCCCCc--------------EEEEecCCC---------CCceeeeeeccc
Confidence            22111  1112456778888876665543221 111              122222222         111111112223


Q ss_pred             ceEEEEEeCCCcEE-EEEc-CCcEEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         374 SVRSVALHPTLYMF-ASAS-PDNIKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       374 ~v~~i~~~~~~~~l-~s~s-~d~i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      ....+++++....| .+-. .+.|...+.........+.+-.. ...+++..+....+-...++|..-|..+|+..+.
T Consensus       168 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~  244 (263)
T d1npea_         168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDT  244 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEETTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEECCEEEEEECCCCEEEEEECCCCccceE
Confidence            45789998765544 4433 33577777754443333333222 3467776443556656778899999988876643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.98  E-value=6  Score=37.10  Aligned_cols=168  Identities=15%  Similarity=0.031  Sum_probs=88.5

Q ss_pred             CeEEEEECCCCceEEEEecCCcCEE---------EEEEcCCCC---EEEEEECCCcEEEEECCCCCcccCCCCC------
Q psy8895         241 KIIKVWDLATGKLKLSLTGHVGSVR---------GLTVSPRHP---YLFSCGDDRTVKCWDLEYNKAPVQPGSM------  302 (479)
Q Consensus       241 ~~i~iWd~~~~~~~~~~~~h~~~v~---------~v~~~~~~~---~l~s~~~d~~i~~wd~~~~~~~~~~~~~------  302 (479)
                      ..+.--|.++|+.+..++.+...++         ...+..++.   .++..+.+|.+.+.|.++++.+......      
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4567778999998887764322111         112222333   3556788999999998777643110000      


Q ss_pred             --------------------CCC---------C--CeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCC----CeEE-
Q psy8895         303 --------------------DSE---------S--GIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEES----HPVI-  346 (479)
Q Consensus       303 --------------------~~~---------~--~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~----~~l~-  346 (479)
                                          ...         +  .-...+++|....+.+...+....+...........    ..+. 
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                000         0  001246677777776666554433332211111100    0000 


Q ss_pred             -------EEeCCCcEEEEECCCCeeEEEEccCCCceEEEEEeCCCcEEEEEcCC-cEEEEeCCCCeEEeee
Q psy8895         347 -------TGSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVALHPTLYMFASASPD-NIKQWKCPEGKFIQNL  409 (479)
Q Consensus       347 -------sgs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~  409 (479)
                             .....|.+.-+|+++++.+.+................+..|+ ++.| .++.+|..+|+.+-+.
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~-G~~dg~l~A~Da~tGe~lW~~  501 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY-ATLDGYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE-ECCCCeEEEEECCCCcEEEEE
Confidence                   011236899999999999887643221111111123444554 5555 5999999999998554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.13  E-value=2  Score=37.47  Aligned_cols=97  Identities=10%  Similarity=0.102  Sum_probs=54.0

Q ss_pred             CcEEEEECCCCe--e--EEEEcc-CCCceEEEEEeCCCcEEEEEc--C--------------CcEEEEeCCCCeEEeeec
Q psy8895         352 CTIRLWDLAAGK--S--LCTLTN-HKKSVRSVALHPTLYMFASAS--P--------------DNIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       352 ~~v~iwd~~~~~--~--~~~~~~-h~~~v~~i~~~~~~~~l~s~s--~--------------d~i~~w~~~~~~~~~~~~  410 (479)
                      .+|.+|++....  .  +.++.. .....+.+++.+++..+++-.  .              ....+|..+.++.. .+.
T Consensus       124 ~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~  202 (340)
T d1v04a_         124 STVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVA  202 (340)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEE
T ss_pred             ceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEc
Confidence            456666654321  1  223322 124568888888888777731  1              11123333233322 111


Q ss_pred             CCcceEEEEEEcCCC--EEEEEeCCCcEEEEecCCCeEEEE
Q psy8895         411 GHNAIINSICVNNEG--VLVSGADNGTMCFWDWRTGYNFQR  449 (479)
Q Consensus       411 ~h~~~v~~l~~~~~~--~l~sg~~dg~i~lWd~~~~~~~~~  449 (479)
                      ..-...+.++++||+  .+++-...++|+.|++.....+..
T Consensus       203 ~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~  243 (340)
T d1v04a_         203 EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTP  243 (340)
T ss_dssp             EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccce
Confidence            222356888999987  567777889999999885544443

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=89.41  E-value=2  Score=40.71  Aligned_cols=59  Identities=12%  Similarity=0.154  Sum_probs=37.3

Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.-||..+|+.+-+.+.............++++.+|+.||.++.+|.+||+.+=++++.
T Consensus       459 l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~  517 (573)
T d1kb0a2         459 LLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG  517 (573)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence            45567777766544322111000111124567888999999999999999999776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.00  E-value=6.1  Score=37.16  Aligned_cols=59  Identities=14%  Similarity=0.283  Sum_probs=38.1

Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.-+|..+|+.+-..+.+............+++.+|+.||.++-+|.+||+.+=++++.
T Consensus       468 l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~  526 (582)
T d1flga_         468 LRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             EEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             EEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECC
Confidence            55567777766544332211111111134567778999999999999999999777654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=88.97  E-value=2.3  Score=37.35  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=69.1

Q ss_pred             EEEcCCCcEEEEEeCCC-----------eEEEEECCCCceEE--E-EecCCcCEEEEEEcCCCCEEEEEECC-CcEEEEE
Q psy8895         225 VAVEPGNEWFATGSADK-----------IIKVWDLATGKLKL--S-LTGHVGSVRGLTVSPRHPYLFSCGDD-RTVKCWD  289 (479)
Q Consensus       225 ~~~~~~g~~l~sgs~d~-----------~i~iWd~~~~~~~~--~-~~~h~~~v~~v~~~~~~~~l~s~~~d-~~i~~wd  289 (479)
                      .....+|+.++.|+.+.           .+.+||..+++...  . -..|.......++.+++..++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            34456889888888531           37799999875432  1 22333334466788999998888655 5899999


Q ss_pred             CCCCCcccCCCCCCCCCCeEEEEEeCCCCEEEEEeCC------CeEEEEeCCC
Q psy8895         290 LEYNKAPVQPGSMDSESGIFSMTFDNSGSRLITTEAD------KTVKLYKEDD  336 (479)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~~~~~~  336 (479)
                      ..+....... .......-...+..++++.++.++..      ..+.+|+...
T Consensus       105 ~~~~~w~~~~-~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         105 SSSDSWIPGP-DMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             GGGTEEEECC-CCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CccCcccccc-cccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            8765432211 11111222345666788888887643      3577787654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.53  E-value=8.1  Score=34.54  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=114.8

Q ss_pred             CCccEEEEEEcCCCcEEE-EEeCCC----eEEEEECCCCceEE-EEecCCcCEEEEEEcCCCCEEEEEECC---------
Q psy8895         218 HLGWVRCVAVEPGNEWFA-TGSADK----IIKVWDLATGKLKL-SLTGHVGSVRGLTVSPRHPYLFSCGDD---------  282 (479)
Q Consensus       218 h~~~v~~~~~~~~g~~l~-sgs~d~----~i~iWd~~~~~~~~-~~~~h~~~v~~v~~~~~~~~l~s~~~d---------  282 (479)
                      +.-.+...+++|++++++ +-+.+|    .+++.|+.+++.+. .+..  .....++|.+|+..++....|         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            333345567899999876 433333    79999999998754 2221  112467899999877654332         


Q ss_pred             -------CcEEEEECCCCCcccC--CCCCCCCCCeEEEEEeCCCCEEEEEeC---CCeEEEE--eCCCCCCC--------
Q psy8895         283 -------RTVKCWDLEYNKAPVQ--PGSMDSESGIFSMTFDNSGSRLITTEA---DKTVKLY--KEDDSATE--------  340 (479)
Q Consensus       283 -------~~i~~wd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~~--~~~~~~~~--------  340 (479)
                             ..+..+.+.+......  .........+..+..+.++++++....   +....+|  +.......        
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                   2577777765433211  111122234556777888888765432   2233344  32211100        


Q ss_pred             ------CC---------C-eEEEEe---CCCcEEEEECCCCee--EEEE-ccCCCceEEEEEeCC-CcEEEEEcCC---c
Q psy8895         341 ------ES---------H-PVITGS---HDCTIRLWDLAAGKS--LCTL-TNHKKSVRSVALHPT-LYMFASASPD---N  394 (479)
Q Consensus       341 ------~~---------~-~l~sgs---~d~~v~iwd~~~~~~--~~~~-~~h~~~v~~i~~~~~-~~~l~s~s~d---~  394 (479)
                            ..         . .++...   .++.+...++.....  ...+ ..++..+..-.+... ..+++.-..+   .
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~  360 (430)
T d1qfma1         281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (430)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeecccccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeE
Confidence                  00         0 111111   123444444443211  1222 233444433333333 3444444344   3


Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCC--EEEEEeC---CCcEEEEecCCCe
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEG--VLVSGAD---NGTMCFWDWRTGY  445 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~--~l~sg~~---dg~i~lWd~~~~~  445 (479)
                      +.+++..+++.........+.|..+...++.  ..++-++   =.++.-+|+.||+
T Consensus       361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            7889988777655544444556555444443  3333221   2667788888875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.41  E-value=2.1  Score=40.33  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=38.4

Q ss_pred             EEEEeCCCCeEEeeecCCcceEEEEEEcCCCEEEEEeCCCcEEEEecCCCeEEEEEEEe
Q psy8895         395 IKQWKCPEGKFIQNLPGHNAIINSICVNNEGVLVSGADNGTMCFWDWRTGYNFQRLQVR  453 (479)
Q Consensus       395 i~~w~~~~~~~~~~~~~h~~~v~~l~~~~~~~l~sg~~dg~i~lWd~~~~~~~~~~~~~  453 (479)
                      +.-+|..+|+.+-..+.............++++..|+.||.++-+|.+||+.+=+.++.
T Consensus       440 l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~  498 (560)
T d1kv9a2         440 LLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ  498 (560)
T ss_dssp             EEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred             eEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECC
Confidence            56678888877644321110001111234667788999999999999999998666554

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.02  E-value=12  Score=34.92  Aligned_cols=174  Identities=15%  Similarity=0.109  Sum_probs=83.5

Q ss_pred             EEEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEECCCcEEEEECCCCC---cc-cCCCCCCCCCCe
Q psy8895         233 WFATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCGDDRTVKCWDLEYNK---AP-VQPGSMDSESGI  308 (479)
Q Consensus       233 ~l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~-~~~~~~~~~~~i  308 (479)
                      .++.++.++.+.+.|..+|+.+......................+.  .++..........+   .. ....... ....
T Consensus       338 ~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~P~~~g-g~~w  414 (582)
T d1flga_         338 ATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE--REGQRPPLPEPGQKHGKAVEVSPPFLG-GKNW  414 (582)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE--CTTCSCCCCCTTCSSCCCEEESSCTTC-SSCS
T ss_pred             eeEeecccccEEeecccCCcccccccccCcccccccccccccccee--ccccccccccccccccceEEECCCccC-Cccc
Confidence            5777888999999999999887665544333333333222111110  11000000000000   00 0000000 0111


Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCe------EEE--EeCCCcEEEEECCCCeeEEEEccCCCceEEEEE
Q psy8895         309 FSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHP------VIT--GSHDCTIRLWDLAAGKSLCTLTNHKKSVRSVAL  380 (479)
Q Consensus       309 ~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~------l~s--gs~d~~v~iwd~~~~~~~~~~~~h~~~v~~i~~  380 (479)
                      ...+++|....+.+...+.....+............      ...  ....|.+.-+|+.+++.+.....+.. +..=.+
T Consensus       415 ~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p-~~~g~l  493 (582)
T d1flga_         415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVL  493 (582)
T ss_dssp             SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCE
T ss_pred             ccceecCCCCceeeeccccccccccccccccccccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCC-Ccccee
Confidence            234666666555555544444444333222211111      111  12347899999999999888764432 221112


Q ss_pred             eCCCcEEEEEcCC-cEEEEeCCCCeEEeeec
Q psy8895         381 HPTLYMFASASPD-NIKQWKCPEGKFIQNLP  410 (479)
Q Consensus       381 ~~~~~~l~s~s~d-~i~~w~~~~~~~~~~~~  410 (479)
                      +-.+.++..++.| .++.+|..+|+.+-+.+
T Consensus       494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            2233344345555 59999999999986554

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.18  E-value=13  Score=30.56  Aligned_cols=163  Identities=17%  Similarity=0.057  Sum_probs=85.5

Q ss_pred             ccEEEEEEcCCCcE-EEEEeCCCeEEEEECCCCceEEEEecCCcCEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCCcc
Q psy8895         220 GWVRCVAVEPGNEW-FATGSADKIIKVWDLATGKLKLSLTGHVGSVRGLTVSPRHPYLFSCG--DDRTVKCWDLEYNKAP  296 (479)
Q Consensus       220 ~~v~~~~~~~~g~~-l~sgs~d~~i~iWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~  296 (479)
                      ..+..+++.+.+.. ..+-...+.|.+.++........+.........++++|...++.-..  ..+.|...++......
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            44567888765554 45555667899999987766555555556778999998655555432  3345655565432221


Q ss_pred             cCCCCCCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCeEEEEeCCCcEEEEECCCCee--EEEEccCCCc
Q psy8895         297 VQPGSMDSESGIFSMTFDNSGSRLITTEADKTVKLYKEDDSATEESHPVITGSHDCTIRLWDLAAGKS--LCTLTNHKKS  374 (479)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~l~sgs~d~~v~iwd~~~~~~--~~~~~~h~~~  374 (479)
                      ...  ...-.....+++++.+..+..+.                        ...+.|...|+.....  +.........
T Consensus       157 ~l~--~~~~~~p~gl~iD~~~~~lYw~d------------------------~~~~~I~~~~~dG~~~~~~~~~~~~~~~  210 (266)
T d1ijqa1         157 SLV--TENIQWPNGITLDLLSGRLYWVD------------------------SKLHSISSIDVNGGNRKTILEDEKRLAH  210 (266)
T ss_dssp             EEE--CSSCSCEEEEEEETTTTEEEEEE------------------------TTTTEEEEEETTSCSCEEEEECTTTTSS
T ss_pred             ccc--ccccceeeEEEeeccccEEEEec------------------------CCcCEEEEEECCCCCEEEEEeCCCcccc
Confidence            111  01123345677776655544332                        1223444444433222  1121222223


Q ss_pred             eEEEEEeCCCcEEEEEcC-CcEEEEeCCCCeEEeee
Q psy8895         375 VRSVALHPTLYMFASASP-DNIKQWKCPEGKFIQNL  409 (479)
Q Consensus       375 v~~i~~~~~~~~l~s~s~-d~i~~w~~~~~~~~~~~  409 (479)
                      ...+++.. +.++.+-.. +.|...+..+++....+
T Consensus       211 p~~lav~~-~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         211 PFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             cEEEEEEC-CEEEEEECCCCeEEEEECCCCcceEEE
Confidence            45677774 444444433 34666666565544333