Psyllid ID: psy8909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MTENVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MTENVENSLsnkmtslststssfepmishdprlNELATNMFKKTADYLIGELNSTQADYEVLEKMNNAtitkysdmKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Flexible Loop (DISEMBL)
mtenvenslsnkmtslststssfepmishdprlNELATNMFKKTADYLIGELNSTQADYEVLEKMNNAtitkysdmKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Low Complexity Region (SEG)
MTENVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Disordered region (IsUnstruct)
***********************************LATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRL**********
Disordered Region (DISOPRED)
**********************************ELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK*****
Disordered Region (DISEMBL)
************************PMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Disordered Region (DISPRO)
***************************SHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTENVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	138	2.2.26 [Sep-21-2011]
Q9VTE0	159	Biogenesis of lysosome-re	yes	N/A	0.840	0.729	0.517	2e-27
Q66KB9	147	Biogenesis of lysosome-re	yes	N/A	0.949	0.891	0.485	7e-26
Q9CWG9	143	Biogenesis of lysosome-re	yes	N/A	0.768	0.741	0.537	3e-25
Q32WR5	142	Biogenesis of lysosome-re	yes	N/A	0.768	0.746	0.537	6e-25
Q4R7C8	142	Biogenesis of lysosome-re	N/A	N/A	0.768	0.746	0.528	3e-24
Q6QNY1	142	Biogenesis of lysosome-re	yes	N/A	0.768	0.746	0.528	3e-24
A7RZS0	171	Biogenesis of lysosome-re	N/A	N/A	0.768	0.619	0.481	1e-20
Q95XD3	132	Biogenesis of lysosome-re	yes	N/A	0.884	0.924	0.327	7e-14
Q54Y67	234	Biogenesis of lysosome-re	yes	N/A	0.710	0.418	0.367	2e-11

>sp|Q9VTE0|BL1S2_DROME Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Drosophila melanogaster GN=blos2 PE=1 SV=2

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/116 (51%), Positives = 82/116 (70%)

Query: 18  TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMK 77
           +S SSFE +  HDP L+ LAT MF KT +Y+  ELN+   DY++LE+MN ATI KY DM+
Sbjct: 30  SSASSFEALTRHDPNLSRLATKMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMR 89

Query: 78  QITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133
           QI  N++ S  E + +++QL P ++QID+I D+V KLE AAYKLD Y+  LE + K
Sbjct: 90  QIAENLNTSTSELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVK 145

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in pigment granule biogenesis.
Drosophila melanogaster (taxid: 7227)

>sp|Q66KB9|BL1S2_XENTR Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Xenopus tropicalis GN=bloc1s2 PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 87/134 (64%), Gaps = 3/134 (2%)

Query: 5   VENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEK 64
           V  S S    ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE 
Sbjct: 17  VAPSASQDDATVETAEEAVEP---PEADINELCRDMFSKMALYLTGELTTTSEDYKLLEN 73

Query: 65  MNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124
           MN  T  KY +MK I  NIS ++++ N++Y  L P LEQI+QI + V  LE AAYKLD Y
Sbjct: 74  MNKLTSLKYMEMKDIAGNISRNLKDLNKKYASLQPYLEQINQIEEQVASLENAAYKLDAY 133

Query: 125 AKRLEAKFKQLEKQ 138
           +KRLEAKFK+LEK+
Sbjct: 134 SKRLEAKFKKLEKR 147

May play a role in cell proliferation. May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system. May play a role in intracellular vesicle trafficking.

Xenopus tropicalis (taxid: 8364)

>sp|Q9CWG9|BL1S2_MOUSE Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Mus musculus GN=Bloc1s2 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 78/106 (73%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
           +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY +MK I +NIS ++++ NQ
Sbjct: 38  INELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQ 97

Query: 93  RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           +Y +L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+LEK+
Sbjct: 98  KYAELQPYLDQINMIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 143

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Mus musculus (taxid: 10090)

>sp|Q32WR5|BL1S2_RAT Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus GN=Bloc1s2 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/106 (53%), Positives = 77/106 (72%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
           +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY +MK I +NIS ++++ NQ
Sbjct: 37  INELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQ 96

Query: 93  RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           +Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+LEK+
Sbjct: 97  KYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 142

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking (By similarity). May be a mediator in the mechanisms of neuropathic pain.

Rattus norvegicus (taxid: 10116)

>sp|Q4R7C8|BL1S2_MACFA Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis GN=BLOC1S2 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 76/106 (71%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
           + EL  +MF K A YL GEL +T  DY++LE MN  T  KY +MK I +NIS ++++ NQ
Sbjct: 37  ITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQ 96

Query: 93  RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           +Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+LEK+
Sbjct: 97  KYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 142

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Macaca fascicularis (taxid: 9541)

>sp|Q6QNY1|BL1S2_HUMAN Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens GN=BLOC1S2 PE=1 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/106 (52%), Positives = 76/106 (71%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
           + EL  +MF K A YL GEL +T  DY++LE MN  T  KY +MK I +NIS ++++ NQ
Sbjct: 37  ITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAINISRNLKDLNQ 96

Query: 93  RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           +Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+LEK+
Sbjct: 97  KYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKKLEKR 142

May play a role in cell proliferation. The BLOC-1 complex is required for normal biogenesis of lysosome-related organelles, such as platelet dense granules and melanosomes. Plays a role in intracellular vesicle trafficking.

Homo sapiens (taxid: 9606)

>sp|A7RZS0|BL1S2_NEMVE Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Nematostella vectensis GN=bloc1s2 PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 72/106 (67%)

Query: 33  LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
           L E     F K   YL GEL ++  DY +LE++NN T  KY +M  +T ++  ++E+ + 
Sbjct: 66  LKETCRVAFDKITQYLNGELTASLEDYTLLEQLNNLTTDKYKEMSTMTKSLITTMEKLDD 125

Query: 93  RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           +YK L P LEQID+I DSV  LEQAAY+LD Y+K+LE KFK+LE++
Sbjct: 126 KYKSLQPYLEQIDRIEDSVSSLEQAAYRLDAYSKKLENKFKRLERR 171

May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Nematostella vectensis (taxid: 45351)

>sp|Q95XD3|BL1S2_CAEEL Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Caenorhabditis elegans GN=blos-2 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 69/122 (56%)

Query: 17  STSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDM 76
           STS+       +  P + +LA NM  K   +   +L  +  +Y++LE MNN T  +Y DM
Sbjct: 9   STSSPPVPSTPAPVPHIRQLADNMTDKVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDM 68

Query: 77  KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136
           K +   ++  ++  NQ+Y+ L P L QID + +S  +LE+A   L++Y  +LE+K   ++
Sbjct: 69  KVVAEKVAGKLDNLNQKYENLRPYLSQIDAMDESTRRLEEATAVLENYVTQLESKLTNIQ 128

Query: 137 KQ 138
           +Q
Sbjct: 129 QQ 130

Component of the biogenesis of lysosome-related organelles complex-1 (BLOC-1) involved in gut granule biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54Y67|BL1S2_DICDI Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum GN=bloc1s2 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 59/98 (60%)

Query: 40  MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIP 99
           MF K + Y+  EL +T +DY +L +MNN T +KY DM  +T  +S  + +   +Y++  P
Sbjct: 85  MFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVFMGDLKIKYEEFQP 144

Query: 100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137
             ++I+++  +V  LE+    LD Y KRLE K K ++K
Sbjct: 145 YFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNIDK 182

May be involved in the biogenesis of specialized organelles of the endosomal-lysosomal system.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
189237985	142	PREDICTED: similar to AGAP005353-PA [Tri	0.985	0.957	0.642	3e-40
332374726	142	unknown [Dendroctonus ponderosae]	0.985	0.957	0.613	3e-39
242004196	149	conserved hypothetical protein [Pediculu	0.833	0.771	0.626	3e-33
240848963	146	biogenesis of lysosome-related organelle	0.898	0.849	0.588	8e-32
345495426	164	PREDICTED: biogenesis of lysosome-relate	0.862	0.725	0.571	3e-28
307191481	161	Biogenesis of lysosome-related organelle	0.833	0.714	0.565	8e-28
118786313	140	AGAP005353-PA [Anopheles gambiae str. PE	0.905	0.892	0.528	9e-28
332022355	161	Biogenesis of lysosome-related organelle	0.833	0.714	0.556	1e-27
350402993	164	PREDICTED: biogenesis of lysosome-relate	0.855	0.719	0.550	2e-27
312377316	141	hypothetical protein AND_27776 [Anophele	0.905	0.886	0.528	2e-27

>gi|189237985|ref|XP_001812669.1| PREDICTED: similar to AGAP005353-PA [Tribolium castaneum]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 104/137 (75%), Gaps = 1/137 (0%)

Query: 2   TENVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEV 61
           +E V +S   K  +LSTSTSSFE +  HDP L+ LAT MF KT+DYL GEL ST  DY +
Sbjct: 7   SEGVTDS-PKKGPTLSTSTSSFEALDPHDPNLSRLATTMFNKTSDYLYGELTSTLDDYRL 65

Query: 62  LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121
           LE MN ATITKYSDMK I  N+S S++E N++Y  L P L+QIDQI DSV+KLEQAAYKL
Sbjct: 66  LENMNRATITKYSDMKHIAANVSKSMQELNEKYNSLQPYLQQIDQIEDSVVKLEQAAYKL 125

Query: 122 DHYAKRLEAKFKQLEKQ 138
           D Y+KRLEAKFK LEK+
Sbjct: 126 DAYSKRLEAKFKSLEKR 142

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374726|gb|AEE62504.1| unknown [Dendroctonus ponderosae]

 Score =  166 bits (419), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/137 (61%), Positives = 104/137 (75%), Gaps = 1/137 (0%)

Query: 2   TENVENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEV 61
           ++ +E+S   +  +LSTSTSSFE +  HDP L+ LA  +F KT+DYL GEL ST  DY++
Sbjct: 7   SDGIEDS-PRRGPTLSTSTSSFEALDPHDPNLSRLANALFSKTSDYLYGELTSTLDDYKL 65

Query: 62  LEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKL 121
           LE MN ATI+KYSDMK I  N+  S+ E NQ+Y  LIP L+QIDQI DSV+KLEQAAYKL
Sbjct: 66  LENMNRATISKYSDMKNIAANVGKSMVELNQKYDALIPLLQQIDQIEDSVVKLEQAAYKL 125

Query: 122 DHYAKRLEAKFKQLEKQ 138
           D Y+KRLEAKFK LEK+
Sbjct: 126 DAYSKRLEAKFKNLEKK 142

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004196|ref|XP_002423007.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505923|gb|EEB10269.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 89/115 (77%)

Query: 15  SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
           +LSTSTS FEP+  HDP ++ LA  MF+K A+ L+GEL STQ DY +LE MN A ITKYS
Sbjct: 25  TLSTSTSGFEPLDPHDPNISLLANKMFQKCAELLLGELTSTQEDYNLLENMNKAVITKYS 84

Query: 75  DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE 129
           DM Q+ + I+NS++E + +YKQL P L+QID I DSV KLEQAAYKLD Y+KRLE
Sbjct: 85  DMHQVAIKITNSMQEIDTKYKQLRPYLDQIDLIEDSVNKLEQAAYKLDSYSKRLE 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848963|ref|NP_001155758.1| biogenesis of lysosome-related organelles complex 1 subunit 2 [Acyrthosiphon pisum] gi|239788527|dbj|BAH70938.1| ACYPI008364 [Acyrthosiphon pisum]

 Score =  141 bits (356), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 93/124 (75%)

Query: 15  SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
           +LSTSTSSFE    HDP L+ L+T MF+KT++YL+GELN T+ DY++LE MN  T+ KY+
Sbjct: 22  TLSTSTSSFERNDPHDPNLSLLSTKMFEKTSEYLMGELNITEEDYKLLETMNKVTMQKYA 81

Query: 75  DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +QI  ++   I E N++YK L P L QID I DSV KLEQAA+KLD YAKRLEAK+K 
Sbjct: 82  SYRQIASDVGKQIIELNEKYKSLEPYLSQIDLIEDSVSKLEQAAFKLDAYAKRLEAKYKS 141

Query: 135 LEKQ 138
           LEK+
Sbjct: 142 LEKR 145

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345495426|ref|XP_003427502.1| PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Nasonia vitripennis]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 90/119 (75%)

Query: 20  TSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQI 79
           TSSFE +  HDP L+ LA  MF+KT++YL  EL +T ADY +LE+MN  TI KY+++K I
Sbjct: 43  TSSFEALDPHDPNLSRLANTMFQKTSEYLQEELTATHADYRLLERMNKETIAKYAELKTI 102

Query: 80  TVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEKQ 138
           + N+S S++  NQ+YK+L P L+ I+QI DSV KLEQAAYKL  Y+ RLEAKFK +EK+
Sbjct: 103 SSNVSQSLDLLNQKYKKLQPVLDNINQIDDSVTKLEQAAYKLLAYSNRLEAKFKDIEKE 161

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191481|gb|EFN75013.1| Biogenesis of lysosome-related organelles complex 1 subunit 2 [Camponotus floridanus]

 Score =  128 bits (321), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 86/115 (74%)

Query: 23  FEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVN 82
           FE +  HDP L+ LA  MF+KT +YL  EL ST ADY++LE++N  TI KY+++K I+ N
Sbjct: 42  FEALDPHDPNLSRLANTMFEKTGEYLQEELTSTHADYQLLERLNKETIAKYTELKIISSN 101

Query: 83  ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137
           I  S++  N++Y++L P L+ I+QI DSV KLEQAAYKL  Y+KRLEAKFK LEK
Sbjct: 102 IVQSLDSLNEKYQKLQPILDNINQIDDSVSKLEQAAYKLAAYSKRLEAKFKDLEK 156

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118786313|ref|XP_315366.3| AGAP005353-PA [Anopheles gambiae str. PEST] gi|116126260|gb|EAA11293.3| AGAP005353-PA [Anopheles gambiae str. PEST]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 89/125 (71%)

Query: 12  KMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATIT 71
           K  +LSTSTSSFEP  +HDP L+ LAT MF+KT DY+  EL ST  DY+++E MN A + 
Sbjct: 13  KGPTLSTSTSSFEPFDAHDPNLSRLATKMFQKTGDYITHELASTVDDYKLIESMNRAMMG 72

Query: 72  KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131
           K +DM+Q++ +I+    E NQ+Y+ L P L++ID I  +V KLE AAY+LD Y+ RLE K
Sbjct: 73  KVADMRQMSQSIAAKNAELNQKYEDLKPLLQRIDDIESTVDKLEAAAYQLDSYSIRLENK 132

Query: 132 FKQLE 136
           FK L+
Sbjct: 133 FKSLK 137

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022355|gb|EGI62667.1| Biogenesis of lysosome-related organelles complex 1 subunit 2 [Acromyrmex echinatior]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/115 (55%), Positives = 84/115 (73%)

Query: 23  FEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVN 82
           FE +  HDP L+ LA  MF+KT +YL  EL +T ADY +LE++N  TI KY+++K I+ N
Sbjct: 42  FEALDPHDPNLSRLANTMFQKTGEYLQEELTATHADYRLLERLNKETIAKYTELKIISSN 101

Query: 83  ISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137
           +  S++  N +YK+L P L+ I+QI DSV KLEQAAYKL  Y+KRLEAKFK LEK
Sbjct: 102 VVQSLDSLNDKYKKLQPILDNINQIDDSVSKLEQAAYKLAAYSKRLEAKFKDLEK 156

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402993|ref|XP_003486669.1| PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Bombus impatiens]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 89/118 (75%)

Query: 20  TSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQI 79
           TSSFE +  HDP L+ LA  MF+KT +YL  EL ST ADY +LE++N  TI KY+++K I
Sbjct: 42  TSSFEALDPHDPNLSRLANTMFQKTGEYLQEELTSTHADYRLLERLNKETIAKYTELKTI 101

Query: 80  TVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK 137
           + +++ S++  N++YK+L P L+ I++I DSV KLEQAAYKL  Y+KRLEAKFK +EK
Sbjct: 102 SSSVAQSLDSLNEKYKKLQPILDNINEIDDSVTKLEQAAYKLAAYSKRLEAKFKDIEK 159

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377316|gb|EFR24175.1| hypothetical protein AND_27776 [Anopheles darlingi]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/125 (52%), Positives = 90/125 (72%)

Query: 12  KMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATIT 71
           K  +LSTSTSSFEP  +HDP L+ LAT MF+KT +Y+  EL ST  DY+++E MN A +T
Sbjct: 13  KGPTLSTSTSSFEPFDAHDPNLSRLATKMFQKTGEYISHELASTVDDYKLIENMNRAMMT 72

Query: 72  KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAK 131
           K +DM+Q++ +I+    E NQ+Y++L P L++ID I  +V KLE AAY+LD Y  RLE K
Sbjct: 73  KVADMRQMSQSIAAKNAELNQKYEELKPLLQRIDDIEATVDKLEAAAYQLDSYTIRLENK 132

Query: 132 FKQLE 136
           FK L+
Sbjct: 133 FKSLK 137

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	138
FB|FBgn0036118	159	blos2 "BLOC-1 subunit 2" [Dros	0.840	0.729	0.517	2.8e-27
UNIPROTKB|Q66KB9	147	bloc1s2 "Biogenesis of lysosom	0.949	0.891	0.485	1.2e-26
UNIPROTKB|F1S8V1	184	BLOC1S2 "Uncharacterized prote	0.876	0.657	0.483	6.6e-26
RGD|1306551	142	Bloc1s2 "biogenesis of lysosom	0.876	0.852	0.483	6.6e-26
UNIPROTKB|F1N5K4	166	BLOC1S2 "Uncharacterized prote	0.876	0.728	0.483	8.4e-26
UNIPROTKB|Q6QNY1	142	BLOC1S2 "Biogenesis of lysosom	0.876	0.852	0.475	2.9e-25
UNIPROTKB|Q4R7C8	142	BLOC1S2 "Biogenesis of lysosom	0.876	0.852	0.475	2.9e-25
UNIPROTKB|E1BXG7	143	BLOC1S2 "Uncharacterized prote	0.876	0.846	0.476	2e-24
UNIPROTKB|Q95XD3	132	blos-2 "Biogenesis of lysosome	0.884	0.924	0.327	6e-16
TAIR|locus:2157854	127	BLOS2 "AT5G49550" [Arabidopsis	0.731	0.795	0.277	3.4e-06

FB|FBgn0036118 blos2 "BLOC-1 subunit 2" [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 60/116 (51%), Positives = 82/116 (70%)

Query:    18 TSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMK 77
             +S SSFE +  HDP L+ LAT MF KT +Y+  ELN+   DY++LE+MN ATI KY DM+
Sbjct:    30 SSASSFEALTRHDPNLSRLATKMFNKTEEYITHELNAPLEDYKLLEEMNKATIAKYKDMR 89

Query:    78 QITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133
             QI  N++ S  E + +++QL P ++QID+I D+V KLE AAYKLD Y+  LE + K
Sbjct:    90 QIAENLNTSTSELSLKFQQLAPMMQQIDEISDTVDKLEAAAYKLDAYSIALENRVK 145

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q66KB9 bloc1s2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 65/134 (48%), Positives = 87/134 (64%)

Query:     5 VENSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEK 64
             V  S S    ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE 
Sbjct:    17 VAPSASQDDATVETAEEAVEPP---EADINELCRDMFSKMALYLTGELTTTSEDYKLLEN 73

Query:    65 MNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHY 124
             MN  T  KY +MK I  NIS ++++ N++Y  L P LEQI+QI + V  LE AAYKLD Y
Sbjct:    74 MNKLTSLKYMEMKDIAGNISRNLKDLNKKYASLQPYLEQINQIEEQVASLENAAYKLDAY 133

Query:   125 AKRLEAKFKQLEKQ 138
             +KRLEAKFK+LEK+
Sbjct:   134 SKRLEAKFKKLEKR 147

GO:0005634 "nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|F1S8V1 BLOC1S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/124 (48%), Positives = 85/124 (68%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    64 AVETAEEAKEPA---EADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 120

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +MK I +NIS ++++ NQ+Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+
Sbjct:   121 EMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKK 180

Query:   135 LEKQ 138
             LEK+
Sbjct:   181 LEKR 184

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

RGD|1306551 Bloc1s2 "biogenesis of lysosomal organelles complex-1, subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 60/124 (48%), Positives = 85/124 (68%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    22 AVETAEEAKEPA---EADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 78

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +MK I +NIS ++++ NQ+Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+
Sbjct:    79 EMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKK 138

Query:   135 LEKQ 138
             LEK+
Sbjct:   139 LEKR 142

GO:0000930 "gamma-tubulin complex" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005813 "centrosome" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO;IPI

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=IEA;ISO

GO:0031083 "BLOC-1 complex" evidence=ISO;ISS;IBA

GO:0031175 "neuron projection development" evidence=ISS

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0043015 "gamma-tubulin binding" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

GO:0055037 "recycling endosome" evidence=IDA

UNIPROTKB|F1N5K4 BLOC1S2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 60/124 (48%), Positives = 85/124 (68%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    46 AVETAEEAKEPA---EADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 102

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +MK I +NIS ++++ NQ+Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+
Sbjct:   103 EMKDIAINISRNLKDLNQKYAGLQPYLDQINIIEEQVAALEQAAYKLDAYSKKLEAKYKK 162

Query:   135 LEKQ 138
             LEK+
Sbjct:   163 LEKR 166

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0000930 "gamma-tubulin complex" evidence=IEA

UNIPROTKB|Q6QNY1 BLOC1S2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/124 (47%), Positives = 84/124 (67%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  + EL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    22 AVETAEEAKEPA---EADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 78

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +MK I +NIS ++++ NQ+Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+
Sbjct:    79 EMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKK 138

Query:   135 LEKQ 138
             LEK+
Sbjct:   139 LEKR 142

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005813 "centrosome" evidence=IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IEA;IPI

GO:0055037 "recycling endosome" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IBA

GO:0000930 "gamma-tubulin complex" evidence=IDA

GO:0043015 "gamma-tubulin binding" evidence=IDA

GO:0008284 "positive regulation of cell proliferation" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0031083 "BLOC-1 complex" evidence=IDA

GO:0032438 "melanosome organization" evidence=NAS

GO:0060155 "platelet dense granule organization" evidence=NAS

GO:0007020 "microtubule nucleation" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0031175 "neuron projection development" evidence=ISS

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|Q4R7C8 BLOC1S2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Macaca fascicularis (taxid:9541)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 59/124 (47%), Positives = 84/124 (67%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  + EL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    22 AVETAEEAKEPA---EADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 78

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ 134
             +MK I +NIS ++++ NQ+Y  L P L+QI+ I + V  LEQAAYKLD Y+K+LEAK+K+
Sbjct:    79 EMKDIAINISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAKYKK 138

Query:   135 LEKQ 138
             LEK+
Sbjct:   139 LEKR 142

GO:0008089 "anterograde axon cargo transport" evidence=ISS

GO:0031083 "BLOC-1 complex" evidence=ISS

GO:0031175 "neuron projection development" evidence=ISS

GO:0048490 "anterograde synaptic vesicle transport" evidence=ISS

UNIPROTKB|E1BXG7 BLOC1S2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 60/126 (47%), Positives = 84/126 (66%)

Query:    15 SLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYS 74
             ++ T+  + EP    +  +NEL  +MF K A YL GEL +T  DY++LE MN  T  KY 
Sbjct:    21 AVETAEEAKEPA---EADINELCKDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYL 77

Query:    75 DMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE--AKF 132
             +MK I +NIS ++++ NQ+Y  L P LEQI+ I + V  LEQAAYKLD Y+KRL   +K+
Sbjct:    78 EMKDIAINISRNLKDLNQKYAALQPYLEQINLIEEQVAALEQAAYKLDAYSKRLGNYSKY 137

Query:   133 KQLEKQ 138
             K+LEK+
Sbjct:   138 KKLEKR 143

GO:0000930 "gamma-tubulin complex" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0031083 "BLOC-1 complex" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043015 "gamma-tubulin binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q95XD3 blos-2 "Biogenesis of lysosome-related organelles complex 1 subunit 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/122 (32%), Positives = 69/122 (56%)

Query:    17 STSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDM 76
             STS+       +  P + +LA NM  K   +   +L  +  +Y++LE MNN T  +Y DM
Sbjct:     9 STSSPPVPSTPAPVPHIRQLADNMTDKVGQFFQHQLEGSIEEYKLLETMNNTTAQRYVDM 68

Query:    77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE 136
             K +   ++  ++  NQ+Y+ L P L QID + +S  +LE+A   L++Y  +LE+K   ++
Sbjct:    69 KVVAEKVAGKLDNLNQKYENLRPYLSQIDAMDESTRRLEEATAVLENYVTQLESKLTNIQ 128

Query:   137 KQ 138
             +Q
Sbjct:   129 QQ 130

GO:0016197 "endosomal transport" evidence=IMP

GO:0031083 "BLOC-1 complex" evidence=TAS

TAIR|locus:2157854 BLOS2 "AT5G49550" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 28/101 (27%), Positives = 44/101 (43%)

Query:    33 LNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQ 92
             L E   N+F   +  +  EL  T    ++LEKMN    ++Y DM  +   +    E+   
Sbjct:     8 LAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAEQMKS 67

Query:    93 RYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFK 133
             +   L   + Q+D I   V + E     LD Y   LE+K +
Sbjct:    68 KSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKIR 108


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.308   0.123   0.316    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      138       138   0.00091  102 3  10 23  0.37    32
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  152 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.23u 0.08s 25.31t   Elapsed:  00:00:14
  Total cpu time:  25.23u 0.08s 25.31t   Elapsed:  00:00:14
  Start:  Thu Aug 15 13:03:13 2013   End:  Thu Aug 15 13:03:27 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010048 "vernalization response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32WR5	BL1S2_RAT	No assigned EC number	0.5377	0.7681	0.7464	yes	N/A
Q9CWG9	BL1S2_MOUSE	No assigned EC number	0.5377	0.7681	0.7412	yes	N/A
Q9VTE0	BL1S2_DROME	No assigned EC number	0.5172	0.8405	0.7295	yes	N/A
Q95XD3	BL1S2_CAEEL	No assigned EC number	0.3278	0.8840	0.9242	yes	N/A
Q6QNY1	BL1S2_HUMAN	No assigned EC number	0.5283	0.7681	0.7464	yes	N/A
Q66KB9	BL1S2_XENTR	No assigned EC number	0.4850	0.9492	0.8911	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	138
pfam10046	99	pfam10046, BLOC1_2, Biogenesis of lysosome-related	9e-23

>gnl|CDD|163611 pfam10046, BLOC1_2, Biogenesis of lysosome-related organelles complex-1 subunit 2

 Score = 85.4 bits (212), Expect = 9e-23
 Identities = 44/99 (44%), Positives = 59/99 (59%)

Query: 37  ATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQ 96
           A  MF K + Y+  EL  +  D ++LEKMN  T  KY  M+Q    +   IE  NQ+Y++
Sbjct: 1   AEKMFNKISKYVEAELEISVEDLKLLEKMNENTALKYKKMRQSAKGLRVEIEALNQKYEE 60

Query: 97  LIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL 135
           L P L+QID I   V  LE+A Y+LD Y+K LE+K K L
Sbjct: 61  LKPYLQQIDAIEQQVTTLEEAVYELDEYSKELESKVKSL 99

Members of this family of proteins play a role in cellular proliferation, as well as in the biogenesis of specialized organelles of the endosomal-lysosomal system. Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	138
KOG4559|consensus	120		100.0
PF10046	99	BLOC1_2: Biogenesis of lysosome-related organelles	100.0
PF10157	149	DUF2365: Uncharacterized conserved protein (DUF236	96.5
PF09403	126	FadA: Adhesion protein FadA; InterPro: IPR018543 F	95.28
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.63
PRK10698	222	phage shock protein PspA; Provisional	91.67
PF15358	558	TSKS: Testis-specific serine kinase substrate	89.09
KOG0980|consensus	980		88.33
PF10398	79	DUF2443: Protein of unknown function (DUF2443); In	87.41
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	86.64
PRK11637	428	AmiB activator; Provisional	86.21
PF13094	160	CENP-Q: CENP-Q, a CENPA-CAD centromere complex sub	85.72
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	84.65
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	84.5
PF02994	370	Transposase_22: L1 transposable element; InterPro:	84.44
PF06825	54	HSBP1: Heat shock factor binding protein 1; InterP	84.17
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	83.58
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	82.25
TIGR00996	291	Mtu_fam_mce virulence factor Mce family protein. M	82.21
PF07058	351	Myosin_HC-like: Myosin II heavy chain-like; InterP	81.78
PF07544	83	Med9: RNA polymerase II transcription mediator com	81.67
PF02994	370	Transposase_22: L1 transposable element; InterPro:	81.21
PRK11637	428	AmiB activator; Provisional	81.06
PRK10807	547	paraquat-inducible protein B; Provisional	80.34
KOG0804|consensus	493		80.11
TIGR02132	189	phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR	80.06

>KOG4559|consensus

Probab=100.00  E-value=1.2e-36  Score=222.85  Aligned_cols=118  Identities=43%  Similarity=0.696  Sum_probs=114.4

Q ss_pred             ccccccCccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHh
Q psy8909           7 NSLSNKMTSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNS   86 (138)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~   86 (138)
                      .+++.+||||| |.|+|+++..|+|+|++||..||.|+.+|+++||++..+||+|||.||++++.||.+|+++|..+..+
T Consensus         2 ~d~~e~a~Tls-Sa~~~~a~~~~~PhirqLAdkM~dKt~ef~qHeLe~~iEdYKLLEeMNkaTaakY~DMk~iAEkla~k   80 (120)
T KOG4559|consen    2 ADINEHAPTLS-SAPPFEALPAHDPHIRQLADKMFDKTEEFFQHELEAPIEDYKLLEEMNKATAAKYKDMKQIAEKLAGK   80 (120)
T ss_pred             CCccccCCccc-CCCCCcCCCCCCccHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            36788999998 55789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          87 IEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYA  125 (138)
Q Consensus        87 ~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ys  125 (138)
                      +..|++||+.|.||++|||.|++++++||+++++||.|+
T Consensus        81 ~deLn~KfenL~P~lqQIDaiddst~kLEaAa~~Ld~Y~  119 (120)
T KOG4559|consen   81 LDELNLKFENLAPMLQQIDAIDDSTDKLEAAAAKLDAYS  119 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999997

>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system []

Probab=100.00  E-value=1.7e-36  Score=218.11  Aligned_cols=99  Identities=48%  Similarity=0.791  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy8909          37 ATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQ  116 (138)
Q Consensus        37 a~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~  116 (138)
                      |++||++++.||+||+++|.+||+|||+||++++.||.+|+++++++++++++|+++|++|+||++|||+||++|++||+
T Consensus         1 ~~~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~   80 (99)
T PF10046_consen    1 AERMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQ   80 (99)
T ss_pred             ChhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q psy8909         117 AAYKLDHYAKRLEAKFKQL  135 (138)
Q Consensus       117 ~a~~LD~ysk~LE~K~k~l  135 (138)
                      +|++||+||++||+|||+|
T Consensus        81 ~v~~LD~ysk~LE~k~k~l   99 (99)
T PF10046_consen   81 TVYELDEYSKELESKFKKL   99 (99)
T ss_pred             HHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999975

>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function

Probab=96.50  E-value=0.22  Score=38.74  Aligned_cols=87  Identities=15%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8909          31 PRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDS  110 (138)
Q Consensus        31 ~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~  110 (138)
                      ..+.+..+.++.++..-|++=...|.+.++....-....-.--+.--...-.+=..+++|++....+...-+||.+|...
T Consensus        62 ~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~  141 (149)
T PF10157_consen   62 QAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKL  141 (149)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677788888888888666777777666665554443322222223334466777777777777888888888888


Q ss_pred             HHHHHHH
Q psy8909         111 VLKLEQA  117 (138)
Q Consensus       111 V~~LE~~  117 (138)
                      |+.||.+
T Consensus       142 lD~lE~~  148 (149)
T PF10157_consen  142 LDLLESL  148 (149)
T ss_pred             HHHHHhc
Confidence            8888764

>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices

Probab=95.28  E-value=0.84  Score=34.58  Aligned_cols=103  Identities=20%  Similarity=0.276  Sum_probs=63.5

Q ss_pred             ccccccCCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHH
Q psy8909          14 TSLSTSTSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQR   93 (138)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~k   93 (138)
                      ..|-.|++||-+.+                 +.=|.+++..-..+|+-|+++   -..+|...++.+..+...+..+.+.
T Consensus         8 ~~lllss~sfaA~~-----------------~~~v~~~l~~LEae~q~L~~k---E~~r~~~~k~~ae~a~~~L~~~~~~   67 (126)
T PF09403_consen    8 GMLLLSSISFAATA-----------------TASVESELNQLEAEYQQLEQK---EEARYNEEKQEAEAAEAELAELKEL   67 (126)
T ss_dssp             --------------------------------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccc-----------------chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888887733                 344556677777888777664   5678999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909          94 YKQLIPQLEQIDQIYDS---VLKLEQAAYKLDHYAKRLEAKFKQLE  136 (138)
Q Consensus        94 y~~l~pyl~qID~Ie~~---V~~LE~~a~~LD~ysk~LE~K~k~le  136 (138)
                      |++...-+..|-+..+-   =.+.-.++.+-+.|-+.|+.+++.-+
T Consensus        68 ~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e  113 (126)
T PF09403_consen   68 YAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNKLDKEIAEQE  113 (126)
T ss_dssp             HHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888777777655332   13455566666666666666665544

; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=92.63  E-value=4.2  Score=32.10  Aligned_cols=55  Identities=11%  Similarity=0.198  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhHhhhhHHHH----HHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHH
Q psy8909          40 MFKKTADYLIGELNSTQADY----EVLEKMNNATITKYSDMKQITVNISNSIEEQNQRY   94 (138)
Q Consensus        40 mf~kvs~yl~~El~~t~~dy----~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky   94 (138)
                      +|+.+..++.|.++...+.+    .+|+..=+-+...+.+.+..+..+...-..++.++
T Consensus         2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~   60 (221)
T PF04012_consen    2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKL   60 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555554444332    34444444444444444444444444444443333

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PRK10698 phage shock protein PspA; Provisional

Probab=91.67  E-value=6.3  Score=32.01  Aligned_cols=38  Identities=13%  Similarity=0.190  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909         100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK  137 (138)
Q Consensus       100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~  137 (138)
                      |-.+|..++.++...+..+.+|-.-..+|+.|+..+..
T Consensus        97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~  134 (222)
T PRK10698         97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRA  134 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888888888888888888888888888877654

>PF15358 TSKS: Testis-specific serine kinase substrate

Probab=89.09  E-value=6.5  Score=35.89  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=76.7

Q ss_pred             CCcccCCCCCchHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHH
Q psy8909          20 TSSFEPMISHDPRLNELATNMFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIP   99 (138)
Q Consensus        20 ~~~~~~~~~~~~~l~~la~~mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~p   99 (138)
                      .+...|..|.||++.++..-+-   |-+|.+-=.+|     -|..=-.....+...+...-.-+..+++.=.|-.++|+.
T Consensus        96 ~~pt~~w~~ddpDi~~~l~gvn---SGLvrAKDSIt-----SlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEg  167 (558)
T PF15358_consen   96 ASPTPPWAPDDPDITELLEGVN---SGLVRAKDSIT-----SLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEG  167 (558)
T ss_pred             CCCCCCCCCCCccHHHHHhhhc---ccceecccchh-----hHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHH
Confidence            3445667778888877654321   12222222222     222223445566777777778888888888888889999


Q ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909         100 QLEQID----QIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK  137 (138)
Q Consensus       100 yl~qID----~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~  137 (138)
                      |..|+.    .+..+|..-|.-++.|-+-+-.||.|++-|++
T Consensus       168 yCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~  209 (558)
T PF15358_consen  168 YCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQ  209 (558)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            988875    47888888999999999999999999998764

>KOG0980|consensus

Probab=88.33  E-value=12  Score=36.91  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=62.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          54 STQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQ----LEQIDQIYDSVLKLEQAAYKLDHYAKRLE  129 (138)
Q Consensus        54 ~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~py----l~qID~Ie~~V~~LE~~a~~LD~ysk~LE  129 (138)
                      .+..-++=+++++...-.+|.+++..-..+...=.+|-.||......    -+-||+.++....|...+-+++.-..++|
T Consensus       407 ka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~  486 (980)
T KOG0980|consen  407 KAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAE  486 (980)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333566788888888999999999999998888888888875544    35678888888888888888877777777


Q ss_pred             HHHHhh
Q psy8909         130 AKFKQL  135 (138)
Q Consensus       130 ~K~k~l  135 (138)
                      .|....
T Consensus       487 ~K~e~~  492 (980)
T KOG0980|consen  487 TKTESQ  492 (980)
T ss_pred             HhhHHH
Confidence            666543

>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species

Probab=87.41  E-value=2.9  Score=29.44  Aligned_cols=76  Identities=24%  Similarity=0.352  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          40 MFKKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAY  119 (138)
Q Consensus        40 mf~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~  119 (138)
                      ||.++-..+. .++.+.++.++|=+|-+..-.-|.-++.-.-++-..+.-            .-.-||+++|.+|-+.++
T Consensus         1 MFEkid~I~k-~IE~~~~eIe~LL~~AkiSl~DyImiKRGS~DmPe~l~~------------~~~~QideeV~~LKe~Id   67 (79)
T PF10398_consen    1 MFEKIDLILK-NIENAQEEIEILLKIAKISLVDYIMIKRGSQDMPEHLNM------------AFLAQIDEEVEKLKEHID   67 (79)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHT--HHHHHHHHTTSS---TTS-H------------HHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHH-HHHHHHHHHHHHHHHhhccHHHHHHhcccCCcCcccccH------------HHHHHHHHHHHHHHHHHH
Confidence            6888766654 688999999999999999999999988766555444332            224467789999999999


Q ss_pred             HHHHHHHHH
Q psy8909         120 KLDHYAKRL  128 (138)
Q Consensus       120 ~LD~ysk~L  128 (138)
                      .|..|-+++
T Consensus        68 aLNK~KkE~   76 (79)
T PF10398_consen   68 ALNKIKKEL   76 (79)
T ss_dssp             HHHHHHGGG
T ss_pred             HHHHHHHHH
Confidence            999887653

The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.

>TIGR02977 phageshock_pspA phage shock protein A

Probab=86.64  E-value=15  Score=29.43  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909          98 IPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE  136 (138)
Q Consensus        98 ~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le  136 (138)
                      ..|-.++..++.++..+...|..|..-...|+.++..+.
T Consensus        95 ~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k  133 (219)
T TIGR02977        95 QKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR  133 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777888888888888888888888888877664

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PRK11637 AmiB activator; Provisional

Probab=86.21  E-value=22  Score=31.00  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHH---HHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          58 DYEVLEKMNNAT---ITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQ----IDQIYDSVLKLEQAAYKLDHYAKRLEA  130 (138)
Q Consensus        58 dy~LLEnmN~~~---s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~q----ID~Ie~~V~~LE~~a~~LD~ysk~LE~  130 (138)
                      |.++|+.+....   .....++......+.....+++.+...|..-.++    ++.++.+....++.+.+|..-.++|+.
T Consensus       168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~  247 (428)
T PRK11637        168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD  247 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444322   2333334444444444444444444444443333    556666666666666666666666666


Q ss_pred             HHHhhh
Q psy8909         131 KFKQLE  136 (138)
Q Consensus       131 K~k~le  136 (138)
                      .+++++
T Consensus       248 ~I~~l~  253 (428)
T PRK11637        248 SIARAE  253 (428)
T ss_pred             HHHHHH
Confidence            665543

>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit

Probab=85.72  E-value=6.7  Score=29.75  Aligned_cols=43  Identities=30%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909          95 KQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK  137 (138)
Q Consensus        95 ~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~  137 (138)
                      ..|.+-+.+|+.+++.+.+.|.....--.|.++||.+.+.+++
T Consensus        34 ~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~   76 (160)
T PF13094_consen   34 RQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER   76 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566888999999999999999999999999999999888764

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=84.65  E-value=24  Score=32.49  Aligned_cols=18  Identities=11%  Similarity=0.213  Sum_probs=6.6

Q ss_pred             HhHHHHHHHHHHhHHHHH
Q psy8909          74 SDMKQITVNISNSIEEQN   91 (138)
Q Consensus        74 ~~m~~~a~~l~~~~~~Ln   91 (138)
                      .++.+....+...+..++
T Consensus       394 ~~~~~~~~~~e~el~~l~  411 (650)
T TIGR03185       394 SQLLKELRELEEELAEVD  411 (650)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=84.50  E-value=11  Score=25.89  Aligned_cols=44  Identities=18%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             HhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy8909          72 KYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLE  115 (138)
Q Consensus        72 kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE  115 (138)
                      ==.+..+.......-.++.+.|-+.+.|.++.+.++.+.|..|.
T Consensus        45 i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~   88 (90)
T PF06103_consen   45 ITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELN   88 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            33455566666666667777777777777777777777777664

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=84.44  E-value=2.3  Score=37.05  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8909         100 QLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQ  134 (138)
Q Consensus       100 yl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~  134 (138)
                      .-..|+++|+.|+.||+-+..+..-.+.++.+++.
T Consensus       142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~  176 (370)
T PF02994_consen  142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKK  176 (370)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34566666666666666666555555444444443

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response []

Probab=84.17  E-value=4.3  Score=26.64  Aligned_cols=44  Identities=18%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             HHHHHHHHhHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          78 QITVNISNSIEEQNQRYKQL-IPQLEQIDQIYDSVLKLEQAAYKL  121 (138)
Q Consensus        78 ~~a~~l~~~~~~Ln~ky~~l-~pyl~qID~Ie~~V~~LE~~a~~L  121 (138)
                      +.+.-+..-+++++.|+..+ ...+.+||+...+|..||+.+..|
T Consensus         3 elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl   47 (54)
T PF06825_consen    3 ELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADL   47 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34455666677888888774 456888999999999999887765

; PDB: 3CI9_A.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=83.58  E-value=27  Score=29.89  Aligned_cols=89  Identities=10%  Similarity=0.221  Sum_probs=40.6

Q ss_pred             HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHH---------------HHHHHHhhHHHHHHHHHHHHHHH
Q psy8909          48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEE---------------QNQRYKQLIPQLEQIDQIYDSVL  112 (138)
Q Consensus        48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~---------------Ln~ky~~l~pyl~qID~Ie~~V~  112 (138)
                      |+.+-..-..+..++..+=-....+|..+...+..+......               |.....++....++|.++++++.
T Consensus       156 l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~  235 (312)
T smart00787      156 LKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQ  235 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444555555555555555555555444444333322               22333334444444555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909         113 KLEQAAYKLDHYAKRLEAKFKQLE  136 (138)
Q Consensus       113 ~LE~~a~~LD~ysk~LE~K~k~le  136 (138)
                      .++..+...-.=..++...+.+++
T Consensus       236 ~l~~~I~~~~~~k~e~~~~I~~ae  259 (312)
T smart00787      236 ELESKIEDLTNKKSELNTEIAEAE  259 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444444444444444444433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=82.25  E-value=5.8  Score=26.59  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8909         102 EQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLE  136 (138)
Q Consensus       102 ~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le  136 (138)
                      ..+|.+++.+..||..-..+|.-.+.+..++++++
T Consensus        13 ~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~   47 (71)
T PF10779_consen   13 TKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK   47 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555555555555543

>TIGR00996 Mtu_fam_mce virulence factor Mce family protein

Probab=82.21  E-value=26  Score=28.56  Aligned_cols=26  Identities=19%  Similarity=0.225  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909         107 IYDSVLKLEQAAYKLDHYAKRLEAKF  132 (138)
Q Consensus       107 Ie~~V~~LE~~a~~LD~ysk~LE~K~  132 (138)
                      |..-+..|..++..|..|+..|+.=+
T Consensus       257 l~~~l~~l~~~~~~l~~~~~~l~~~l  282 (291)
T TIGR00996       257 LPQALANLAPVLTLLVDYHPELEQLL  282 (291)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHH
Confidence            34444445555555555555555433

Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.

>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana

Probab=81.78  E-value=15  Score=32.24  Aligned_cols=73  Identities=14%  Similarity=0.251  Sum_probs=61.8

Q ss_pred             HhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          48 LIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYK  120 (138)
Q Consensus        48 l~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~  120 (138)
                      |.-++++-.++.++|++||+--.....++.+.+..|+..+-.=-.--+..+.|-.||-++-+.-..||-=..+
T Consensus        12 L~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRELAR   84 (351)
T PF07058_consen   12 LMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERELAR   84 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999999999988888877777777788999999999998888888864433

>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=81.67  E-value=5.5  Score=27.64  Aligned_cols=59  Identities=8%  Similarity=0.173  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909          77 KQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQL  135 (138)
Q Consensus        77 ~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l  135 (138)
                      .-.+.++......|+.|....+.++..+.+|+.+|..-|+-+..|.......-.-+..+
T Consensus        20 ~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~   78 (83)
T PF07544_consen   20 PLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKF   78 (83)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33467788888889999999999999999999999999998888888776665544443

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition

Probab=81.21  E-value=5.3  Score=34.79  Aligned_cols=42  Identities=31%  Similarity=0.443  Sum_probs=34.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8909          96 QLIPQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKFKQLEK  137 (138)
Q Consensus        96 ~l~pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~k~le~  137 (138)
                      .+...=+.|..+|+.+..+++.+..+....+.|+.++..++-
T Consensus       145 Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn  186 (370)
T PF02994_consen  145 RIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN  186 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence            345555678889999999999998888888888888888764

Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.

>PRK11637 AmiB activator; Provisional

Probab=81.06  E-value=37  Score=29.62  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=10.6

Q ss_pred             ccCccccccCCcccCC
Q psy8909          11 NKMTSLSTSTSSFEPM   26 (138)
Q Consensus        11 ~~~~~~~~~~~~~~~~   26 (138)
                      +||...-|-|-++.|-
T Consensus         1 ~~~~~~~~~~~~~~~~   16 (428)
T PRK11637          1 MRGKAINTMTRAVKPR   16 (428)
T ss_pred             CCCcccccccccccch
Confidence            4666677777776663

>PRK10807 paraquat-inducible protein B; Provisional

Probab=80.34  E-value=32  Score=31.61  Aligned_cols=102  Identities=15%  Similarity=0.279  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHHHH----HhhHhhhhHHHH-HHHHHHHHHHHH-----HhHhHHHHHHHHHHhHHHHHHHHHhhHHH
Q psy8909          31 PRLNELATNMFKKTADY----LIGELNSTQADY-EVLEKMNNATIT-----KYSDMKQITVNISNSIEEQNQRYKQLIPQ  100 (138)
Q Consensus        31 ~~l~~la~~mf~kvs~y----l~~El~~t~~dy-~LLEnmN~~~s~-----kY~~m~~~a~~l~~~~~~Ln~ky~~l~py  100 (138)
                      ..|.+-+..++.++.+.    +-++++++..+. +++++++.....     -=..+.....++...+..++...+.++|-
T Consensus       416 ~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~~  495 (547)
T PRK10807        416 AQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQPG  495 (547)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            34555555566665555    223344444443 244455544411     11344455577788888888877777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909         101 LEQIDQIYDSVLKLEQAAYKLDHYAKRLEAKF  132 (138)
Q Consensus       101 l~qID~Ie~~V~~LE~~a~~LD~ysk~LE~K~  132 (138)
                      .....++.+.+.+|.+++..|..-+..|+.+=
T Consensus       496 s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P  527 (547)
T PRK10807        496 SPAYNKMVADMQRLDQVLRELQPVLKTLNEKS  527 (547)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            77788888888899999999988888887653

>KOG0804|consensus

Probab=80.11  E-value=49  Score=30.45  Aligned_cols=70  Identities=13%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             HHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy8909          42 KKTADYLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQIYDSV  111 (138)
Q Consensus        42 ~kvs~yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~Ie~~V  111 (138)
                      +.++.|.+++++.-..-|+++-.--+.....-.++...-..+++.+.+++.|.+.++.-++-+.++++.+
T Consensus       339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l  408 (493)
T KOG0804|consen  339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL  408 (493)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5688899999999999898887766666777778888888888888888888888777777666555443

>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit

Probab=80.06  E-value=11  Score=30.49  Aligned_cols=63  Identities=22%  Similarity=0.354  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy8909          61 VLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLE----QIDQIYDSVLKLEQAAYKLDH  123 (138)
Q Consensus        61 LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~----qID~Ie~~V~~LE~~a~~LD~  123 (138)
                      .|++||--+..--..+...+.+|+..+..+...+..+-.++.    |=-.....|++||+=+..||.
T Consensus        62 YLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~  128 (189)
T TIGR02132        62 YLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDK  128 (189)
T ss_pred             HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHH
Confidence            466666666666666777778888888888777666555555    555666777777776655544

This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	138
2avr_X	119	Adhesion A; antiparallel helix-loop-helix, leucine	92.63
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	92.52
3etw_A	119	Adhesin A; antiparallel helix-loop-helix, leucine	88.69
2ieq_A	109	S glycoprotein, spike glycoprotein, peplomer prote	88.54
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	88.24
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	86.12
4dac_A	28	Computationally designed crystal forming protein;	85.19
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	83.43

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=92.52  E-value=4  Score=33.94  Aligned_cols=26  Identities=8%  Similarity=0.092  Sum_probs=15.3

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhhHhh
Q psy8909          28 SHDPRLNELATNMFKKTADYLIGELN   53 (138)
Q Consensus        28 ~~~~~l~~la~~mf~kvs~yl~~El~   53 (138)
                      |..|...+....+-..+..++.|+.+
T Consensus       345 p~~p~~~~~~~~~~~~~~~vl~G~~t  370 (471)
T 3mq9_A          345 PNIPQMSAFWYAVRTAVINAASGRQT  370 (471)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCCC
Confidence            34455555555555667777777643

>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A

Probab=88.69  E-value=5.5  Score=28.99  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=67.5

Q ss_pred             HHhhHhhhhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHH
Q psy8909          47 YLIGELNSTQADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ----------IYDSVLKLEQ  116 (138)
Q Consensus        47 yl~~El~~t~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~----------Ie~~V~~LE~  116 (138)
                      =|.++++.--..|..|++|=   ..+|.+-+..|..-...+....+.|+.+..-+..|-+          ....|.+++.
T Consensus         6 ~i~~~l~~Leae~q~L~~~E---~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~   82 (119)
T 3etw_A            6 SLVGELQALDAEYQNLANQE---EARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYED   82 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence            36678888888999888864   5789999999999999999999999999988888854          4556777777


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy8909         117 AAYKLDHYAKRLEAKFKQ  134 (138)
Q Consensus       117 ~a~~LD~ysk~LE~K~k~  134 (138)
                      +...||.-.+..+..+..
T Consensus        83 ~~keLd~~ik~qekiIdn  100 (119)
T 3etw_A           83 ALKKLEAEMEQQKAVISD  100 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777777766655443

>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}

Probab=88.54  E-value=1.1  Score=32.46  Aligned_cols=62  Identities=6%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             HHHHHhHhHHHHHHHHHHhHHHHHHHHH--------hhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          68 ATITKYSDMKQITVNISNSIEEQNQRYK--------QLI--------PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLE  129 (138)
Q Consensus        68 ~~s~kY~~m~~~a~~l~~~~~~Ln~ky~--------~l~--------pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE  129 (138)
                      .++.-|.++.+++.+.++.+.+|=++|.        .++        .....||++|.+...|-.++.+|-.|...|-
T Consensus        26 tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~LEa~A~~l~~~~~elq~~idn~n  103 (109)
T 2ieq_A           26 TVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQIN  103 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566788888888888877777665544        233        4456899999999999999999999887664

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=88.24  E-value=13  Score=32.60  Aligned_cols=67  Identities=13%  Similarity=0.050  Sum_probs=46.0

Q ss_pred             HHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8909          69 TITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQIDQ--IYDSVLKLEQAAYKLDHYAKRLEAKFKQL  135 (138)
Q Consensus        69 ~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qID~--Ie~~V~~LE~~a~~LD~ysk~LE~K~k~l  135 (138)
                      ....|........+....+++....++..+.|++.+..  +..++..|+..+..|..-...||.++..+
T Consensus       126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~  194 (464)
T 1m1j_B          126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQ  194 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555556666666666677777777766654  66788888888888888888888877654

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=86.12  E-value=15  Score=34.94  Aligned_cols=74  Identities=8%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          56 QADYEVLEKMNNATITKYSDMKQITVNISNSIEEQNQRYKQLIPQLEQI-DQIYDSVLKLEQAAYKLDHYAKRLE  129 (138)
Q Consensus        56 ~~dy~LLEnmN~~~s~kY~~m~~~a~~l~~~~~~Ln~ky~~l~pyl~qI-D~Ie~~V~~LE~~a~~LD~ysk~LE  129 (138)
                      .++++.++.=+...-.+-..+......+...+..+...++.++.-.++. ++++++|..|++....|.+-.-.||
T Consensus       969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555544444445555555555555554444444444433332222 3444444444444444444444444

>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}

Probab=85.19  E-value=0.95  Score=24.96  Aligned_cols=19  Identities=53%  Similarity=0.739  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q psy8909         118 AYKLDHYAKRLEAKFKQLE  136 (138)
Q Consensus       118 a~~LD~ysk~LE~K~k~le  136 (138)
                      ||+||.-+|+||..+-++|
T Consensus         3 vykldanvkrlekevgkle   21 (28)
T 4dac_A            3 VYKLDANVKRLEKEVGKLE   21 (28)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             eeeccccHHHHHHHHhhhh
Confidence            6778888888887777665

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=83.43  E-value=3.7  Score=24.97  Aligned_cols=32  Identities=22%  Similarity=0.358  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          99 PQLEQIDQIYDSVLKLEQAAYKLDHYAKRLEA  130 (138)
Q Consensus        99 pyl~qID~Ie~~V~~LE~~a~~LD~ysk~LE~  130 (138)
                      ..+|+||-|+..+++-|+-+..|-.--+.||.
T Consensus         6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee   37 (42)
T 2l5g_B            6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE   37 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999988888887777774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	138
d1zavu1	30	Ribosomal protein L7/12, oligomerisation (N-termin	83.51
d3bi1a1	157	Glutamate carboxypeptidase II {Human (Homo sapiens	81.85

>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
superfamily: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
family: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
domain: Ribosomal protein L7/12, oligomerisation (N-terminal) domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.51  E-value=0.63  Score=24.87  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=18.3

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy8909         108 YDSVLKLEQ-AAYKLDHYAKRLEAKF  132 (138)
Q Consensus       108 e~~V~~LE~-~a~~LD~ysk~LE~K~  132 (138)
                      |+-|..+|+ +|.+|.+.+|.||.||
T Consensus         4 eeiv~aiekltvaelaelvk~ledkf   29 (30)
T d1zavu1           4 DEIIEAIEKLTVSELAELVKKLEDKF   29 (30)
T ss_dssp             HHHHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            333455554 4788999999999987

>d3bi1a1 a.48.2.1 (A:594-750) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: N-cbl like
superfamily: Transferrin receptor-like dimerisation domain
family: Transferrin receptor-like dimerisation domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=1.8  Score=29.68  Aligned_cols=54  Identities=9%  Similarity=0.199  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8909          76 MKQITVNISNSIEEQNQRYKQLIPQLEQ----IDQIYDSVLKLEQAAYKLDHYAKRLE  129 (138)
Q Consensus        76 m~~~a~~l~~~~~~Ln~ky~~l~pyl~q----ID~Ie~~V~~LE~~a~~LD~ysk~LE  129 (138)
                      +.+-|..|...+.+|+.......+-+..    ++.+...|..|++++.+++.+...++
T Consensus         4 ~~~Ya~~L~~~~~~l~~~~~~~~~~l~~~~~~~~~L~~a~~~f~~aa~~~~~~~~~~~   61 (157)
T d3bi1a1           4 CRDYAVVLRKYADKIYSISMKHPQEMKTYSVSFDSLFSAVKNFTEIASKFSERLQDFD   61 (157)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777766655555543    78888888888888888888866544