Psyllid ID: psy8915

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
MAMYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
ccccccccccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHcccHHHcccccccccHHHHHHcccccEEEEcccccEEEEccccccccccccccccHHccccccHHHHHHHHHHHHHcccccccccc
cHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccccccccccHHEEEcccccccEEEEEEEEEEEccHEccccccccccHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHccHHHHHHccccEEEEEccccEEEEEccHHHHccccccccHHHHHcccccccHHHHHHHHHHHHHcccccccc
mamyfksdnpndpgsnpspaevESEFWNHVTNRMLHICVhsasidtgsngcgfptaknstfakhpwnlkvltnnSASILRSLNSLVdrisfgkidfGFEIIEFllpisprygipdehsTAFRSTMmslfphycrsdktiwlssdvamippslltekgvslsrvvqepgqfilvfpsaftssiaTGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
MAmyfksdnpndpgsnpSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
MAMYFKsdnpndpgsnpspAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
************************EFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLK**
*AMYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLK**
**********************ESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
*AMYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQY*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAMYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNSLVDRISFGKIDFGFEIIEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYCLKVD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query220 2.2.26 [Sep-21-2011]
Q1LVC2 1319 Protein Jumonji OS=Danio yes N/A 0.904 0.150 0.324 9e-30
Q62315 1234 Protein Jumonji OS=Mus mu yes N/A 0.886 0.158 0.336 6e-27
Q92833 1246 Protein Jumonji OS=Homo s yes N/A 0.886 0.156 0.331 1e-26
Q5F363 1233 Protein Jumonji OS=Gallus yes N/A 0.854 0.152 0.316 1e-25
Q38JA7 1556 Lysine-specific demethyla no N/A 0.981 0.138 0.271 1e-13
A1YVX4 1516 Lysine-specific demethyla no N/A 0.981 0.142 0.271 1e-13
P41230 1554 Lysine-specific demethyla no N/A 0.981 0.138 0.271 2e-13
Q9US53 715 Jumonji/ARID domain-conta yes N/A 0.809 0.248 0.266 3e-13
Q9BY66 1539 Lysine-specific demethyla no N/A 0.981 0.140 0.271 3e-13
P41229 1560 Lysine-specific demethyla no N/A 0.981 0.138 0.271 3e-13
>sp|Q1LVC2|JARD2_DANRE Protein Jumonji OS=Danio rerio GN=jarid2b PE=3 SV=2 Back     alignment and function desciption
 Score =  130 bits (326), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 109/234 (46%), Gaps = 35/234 (14%)

Query: 1    MAMYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNST 60
            M MYF  +        P  AEVE ++W  V  R  H+ VH   +DT ++G GFP  K+  
Sbjct: 903  MMMYFNKE--------PGAAEVEQDYWRIVEQRDCHVAVHYGKVDTNTHGSGFPVGKSEP 954

Query: 61   FAKHPWNLKVLTNNSASILRSLNSL--------------------VDRISFGKIDFGFEI 100
            F+KH WNL VL NNS SILR L ++                     D+     ID+    
Sbjct: 955  FSKHGWNLTVLPNNSGSILRHLGAVPGVTIPWLNIGMVFSTSCWSQDQNRLPYIDYLHTG 1014

Query: 101  IEFLLPISPRYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSL 160
             + +      Y IP E  T     + +L          + +     MI P +L  +G+ +
Sbjct: 1015 ADCIW-----YSIPAEEKTKLDKVVHTLL--QANGTPGLEMLEKNVMISPEVLCREGIKV 1067

Query: 161  SRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQ 214
             R VQ+ GQF++VFP AF S +  GY V+E+V+FA P W++      K  K R+
Sbjct: 1068 HRTVQQSGQFVVVFPGAFVSRVCCGYSVSETVHFATPQWMNLGYEAAKDLKCRR 1121
Regulator of histone methyltransferase complexes that plays an essential role in embryonic development. Acts by modulating histone methyltransferase activity and promoting the recruitment of histone methyltransferase complexes to their target genes. Binds DNA and mediates the recruitment of the PRC2 complex to target genes in embryonic stem cells. Does not have histone demethylase activity but regulates activity of various histone methyltransferase complexes. In embryonic stem cells, it associates with the PRC2 complex and inhibits trimethylation of 'Lys-27' of histone H3 (H3K27me3) by the PRC2 complex, thereby playing a key role in differentiation of embryonic stem cells and normal development.
Danio rerio (taxid: 7955)
>sp|Q62315|JARD2_MOUSE Protein Jumonji OS=Mus musculus GN=Jarid2 PE=1 SV=1 Back     alignment and function description
>sp|Q92833|JARD2_HUMAN Protein Jumonji OS=Homo sapiens GN=JARID2 PE=1 SV=2 Back     alignment and function description
>sp|Q5F363|JARD2_CHICK Protein Jumonji OS=Gallus gallus GN=JARID2 PE=2 SV=1 Back     alignment and function description
>sp|Q38JA7|KDM5C_CANFA Lysine-specific demethylase 5C OS=Canis familiaris GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|A1YVX4|KDM5C_PIG Lysine-specific demethylase 5C OS=Sus scrofa GN=KDM5C PE=2 SV=1 Back     alignment and function description
>sp|P41230|KDM5C_MOUSE Lysine-specific demethylase 5C OS=Mus musculus GN=Kdm5c PE=2 SV=4 Back     alignment and function description
>sp|Q9US53|JMJ2_SCHPO Jumonji/ARID domain-containing protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=jmj2 PE=4 SV=1 Back     alignment and function description
>sp|Q9BY66|KDM5D_HUMAN Lysine-specific demethylase 5D OS=Homo sapiens GN=KDM5D PE=1 SV=2 Back     alignment and function description
>sp|P41229|KDM5C_HUMAN Lysine-specific demethylase 5C OS=Homo sapiens GN=KDM5C PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
242022402 2399 jumonji/arid domain-containing protein, 0.9 0.082 0.538 3e-58
307213539 560 Protein Jumonji [Harpegnathos saltator] 0.895 0.351 0.539 5e-58
350406470 1933 PREDICTED: hypothetical protein LOC10074 0.863 0.098 0.548 3e-57
340716296 1929 PREDICTED: hypothetical protein LOC10064 0.863 0.098 0.548 3e-57
380018075 1876 PREDICTED: uncharacterized protein LOC10 0.863 0.101 0.548 4e-57
328785791 1878 PREDICTED: hypothetical protein LOC40925 0.863 0.101 0.548 4e-57
380018073 1870 PREDICTED: uncharacterized protein LOC10 0.863 0.101 0.548 4e-57
332030322 1883 Protein Jumonji [Acromyrmex echinatior] 0.931 0.108 0.515 2e-56
383858431 1909 PREDICTED: uncharacterized protein LOC10 0.863 0.099 0.543 9e-56
307174418 1855 Protein Jumonji [Camponotus floridanus] 0.931 0.110 0.511 9e-56
>gi|242022402|ref|XP_002431629.1| jumonji/arid domain-containing protein, putative [Pediculus humanus corporis] gi|212516937|gb|EEB18891.1| jumonji/arid domain-containing protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/221 (53%), Positives = 150/221 (67%), Gaps = 23/221 (10%)

Query: 3    MYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFA 62
            M+FK+       ++PSP +VE+EFW HV+ R  H+CVHS SID+   G GFP AKN++F+
Sbjct: 2021 MWFKN-------ADPSPRDVETEFWKHVSERNHHVCVHSGSIDSSGWGYGFPIAKNNSFS 2073

Query: 63   KHPWNLKVLTNNSASILRSLNSL----VDRISFGKI---------DFGFEIIEFLLPISP 109
            KHPWNLKVLTNNS S+LRSL  +    V  +  G +           G   IE+L   +P
Sbjct: 2074 KHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMVFTAFCWYRDPHGLPWIEYLHTGAP 2133

Query: 110  R--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEP 167
            +  YGI D++S+ F+  +  L P Y + +KTIWL SD AMIPPSLL E GVSL   +QEP
Sbjct: 2134 KIWYGISDDNSSVFQDALRKLIPRYIK-NKTIWLPSDTAMIPPSLLVENGVSLCHSIQEP 2192

Query: 168  GQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208
            GQFILVFP AF SSI TGYLV+ESVYFA+PSWL+T E+ FK
Sbjct: 2193 GQFILVFPRAFISSICTGYLVSESVYFAQPSWLTTAEQAFK 2233

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307213539|gb|EFN88948.1| Protein Jumonji [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|350406470|ref|XP_003487781.1| PREDICTED: hypothetical protein LOC100745817 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340716296|ref|XP_003396635.1| PREDICTED: hypothetical protein LOC100643807 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380018075|ref|XP_003692962.1| PREDICTED: uncharacterized protein LOC100870657 isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|328785791|ref|XP_392775.4| PREDICTED: hypothetical protein LOC409252 [Apis mellifera] Back     alignment and taxonomy information
>gi|380018073|ref|XP_003692961.1| PREDICTED: uncharacterized protein LOC100870657 isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|332030322|gb|EGI70065.1| Protein Jumonji [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383858431|ref|XP_003704705.1| PREDICTED: uncharacterized protein LOC100882081 [Megachile rotundata] Back     alignment and taxonomy information
>gi|307174418|gb|EFN64929.1| Protein Jumonji [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query220
FB|FBgn0036004 2351 Jarid2 "Jumonji, AT rich inter 0.7 0.065 0.488 6e-35
ZFIN|ZDB-GENE-060503-246 1319 jarid2b "jumonji, AT rich inte 0.877 0.146 0.342 1.6e-25
MGI|MGI:104813 1234 Jarid2 "jumonji, AT rich inter 0.872 0.155 0.334 3.2e-23
UNIPROTKB|F1RUJ7 1232 JARID2 "Uncharacterized protei 0.872 0.155 0.334 6.6e-23
UNIPROTKB|Q92833 1246 JARID2 "Protein Jumonji" [Homo 0.872 0.154 0.330 6.7e-23
UNIPROTKB|F1P6D5 1249 JARID2 "Uncharacterized protei 0.872 0.153 0.330 6.7e-23
UNIPROTKB|J9NWC2 1259 JARID2 "Uncharacterized protei 0.872 0.152 0.330 6.8e-23
UNIPROTKB|F1MH56 1248 JARID2 "Uncharacterized protei 0.872 0.153 0.330 1.4e-22
UNIPROTKB|F1NWZ0 1220 JARID2 "Protein Jumonji" [Gall 0.877 0.158 0.328 2.2e-22
UNIPROTKB|Q5F363 1233 JARID2 "Protein Jumonji" [Gall 0.877 0.156 0.328 2.2e-22
FB|FBgn0036004 Jarid2 "Jumonji, AT rich interactive domain 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 390 (142.3 bits), Expect = 6.0e-35, Sum P(2) = 6.0e-35
 Identities = 83/170 (48%), Positives = 112/170 (65%)

Query:    54 PTAKNSTFAKHPWNLKVLTNNSASILRSLNSL----VDRISFGKI--------D-FGFEI 100
             P  K S +A+HPWNLKVLTNNS S+LRSL  +    V  +  G +        D  G   
Sbjct:  2027 PKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSW 2086

Query:   101 IEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGV 158
             IE+L   + +  YGIPD+ S  FR+ + SL P +C++ KTIWL  D  M+PP +LT++GV
Sbjct:  2087 IEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQN-KTIWLPCDTVMVPPHMLTDRGV 2145

Query:   159 SLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK 208
             SL R+ Q+PG+FI+VFP A+TSS+ATGY+V+ESVYFA  SWL   +  F+
Sbjct:  2146 SLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFR 2195
GO:0005634 "nucleus" evidence=ISS
GO:0003677 "DNA binding" evidence=IEA
GO:0005719 "nuclear euchromatin" evidence=IDA
GO:0035098 "ESC/E(Z) complex" evidence=IDA
GO:0061085 "regulation of histone H3-K27 methylation" evidence=IMP
GO:0005700 "polytene chromosome" evidence=IDA
ZFIN|ZDB-GENE-060503-246 jarid2b "jumonji, AT rich interactive domain 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:104813 Jarid2 "jumonji, AT rich interactive domain 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RUJ7 JARID2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q92833 JARID2 "Protein Jumonji" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6D5 JARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NWC2 JARID2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MH56 JARID2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWZ0 JARID2 "Protein Jumonji" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F363 JARID2 "Protein Jumonji" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
pfam02373114 pfam02373, JmjC, JmjC domain, hydroxylase 3e-09
>gnl|CDD|202224 pfam02373, JmjC, JmjC domain, hydroxylase Back     alignment and domain information 
 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 111 YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQEPGQF 170
           Y IP E++  F   +          D  + L++   +I P  L E G+ + R VQ+PG+F
Sbjct: 35  YIIPSEYAEKFEKVLSKHNGGEQ-PDLLLHLNT---IISPKQLLENGIPVYRFVQKPGEF 90

Query: 171 ILVFPSAFTSSIATGYLVAESVYF 194
           +  FP  +      G+ +AE+V F
Sbjct: 91  VFTFPGWYHQVFNLGFNIAEAVNF 114

The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins may be protein hydroxylases that catalyze a novel histone modification. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the biosynthesis of a hypermodified nucleoside, hydroxy-wybutosine, in tRNA-Phe by catalyzing hydroxylation. Length = 114

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 220
KOG0958|consensus 690 100.0
KOG1246|consensus 904 100.0
PF02373114 JmjC: JmjC domain, hydroxylase; InterPro: IPR01312 99.96
smart0055857 JmjC A domain family that is part of the cupin met 97.79
KOG1356|consensus889 94.04
KOG2131|consensus427 92.79
PF13621251 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU 91.01
>KOG0958|consensus Back     alignment and domain information 
Probab=100.00  E-value=9e-57  Score=426.72  Aligned_cols=185  Identities=28%  Similarity=0.551  Sum_probs=170.8

Q ss_pred             CCCCCCCCCCCChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHH--hhcc
Q psy8915           7 SDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILR--SLNS   84 (220)
Q Consensus         7 ~~~~~~~~~~~~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~--~l~~   84 (220)
                      ++.|.+|....+.+|+|++|||+++...   ++||||+.    ||.|+..      ...||+++|+    .+|.  ..+.
T Consensus       105 s~~y~tpr~~~d~~dle~kYWKnltf~~---PiYGaD~~----gSi~~~~------~~~WNi~~L~----tild~~~~~~  167 (690)
T KOG0958|consen  105 SDKYCTPRGSQDFEDLEQKYWKNLTFDS---PIYGADIN----GSIYDED------LDEWNIARLD----TILDLEECGI  167 (690)
T ss_pred             hcccCCCcccccHHHHHHHHHhcccCCC---CcccccCC----CccCccc------cccccccccc----chhchhhcce
Confidence            4556677767799999999999999998   79999998    9999987      8999999995    4453  5554


Q ss_pred             -ccCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCcccccccccc
Q psy8915          85 -LVDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMI  148 (220)
Q Consensus        85 -i~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i  148 (220)
                       |.||    ||+|         +||++||||||||||+|  ||+||++|.++||+++.+++|+..+ +|+.||||++++|
T Consensus       168 ~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~-~C~aFLRHK~~Li  246 (690)
T KOG0958|consen  168 IIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQ-GCPAFLRHKMTLI  246 (690)
T ss_pred             eecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCcccc-CCHHHHhhccccc
Confidence             8888    9999         89999999999999999  9999999999999999999999987 8999999999999


Q ss_pred             CchhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHH
Q psy8915         149 PPSLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKI  209 (220)
Q Consensus       149 ~P~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~  209 (220)
                      +|.+|+++|||+.+++|++||||||||++||+|||+||||||++|||+++|++||++|.+.
T Consensus       247 SP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C  307 (690)
T KOG0958|consen  247 SPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLC  307 (690)
T ss_pred             CHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhccccccc
Confidence            9999999999999999999999999999999999999999999999999999999988753

>KOG1246|consensus Back     alignment and domain information
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [] Back     alignment and domain information
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily Back     alignment and domain information
>KOG1356|consensus Back     alignment and domain information
>KOG2131|consensus Back     alignment and domain information
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
3dxt_A354 Crystal Structure Of The Catalytic Core Domain Of J 2e-11
4hon_A330 Crystal Structure Of Human Jmjd2d/kdm4d In Complex 2e-11
4hoo_A330 Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme L 2e-11
3dxu_A337 The Crystal Structure Of Core Jmjd2d Complexed With 2e-11
2w2i_A358 Crystal Structure Of The Human 2-Oxoglutarate Oxyge 5e-10
3opt_A373 Crystal Structure Of The Rph1 Catalytic Core With A 2e-08
2xml_A348 Crystal Structure Of Human Jmjd2c Catalytic Domain 3e-08
2wwj_A348 Structure Of Jmjd2a Complexed With Inhibitor 10a Le 8e-08
2pxj_A347 The Complex Structure Of Jmjd2a And Monomethylated 8e-08
2p5b_A352 The Complex Structure Of Jmjd2a And Trimethylated H 8e-08
2oq6_A381 Crystal Structure Of Jmjd2a Complexed With Histone 8e-08
2gp3_A349 Crystal Structure Of The Catalytic Core Domain Of J 9e-08
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d Length = 354 Back     alignment and structure 
Iteration: 1

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 95  DFGFEIIEFLLPISPR--YGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSL 152
           D     I +L    P+  Y +P EH          LFP   R      L   VA+I P++
Sbjct: 195 DMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSRGCGAF-LRHKVALISPTV 253
Query: 153 LTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLS 201
           L E G+  +R+ QE G+F++ FP  + +    G+  AE++ FA P W+ 
Sbjct: 254 LKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWID 302
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An H3k9me3 Peptide And 2-oxoglutarate Length = 330 Back     alignment and structure
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme Length = 330 Back     alignment and structure
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And N- Oxalylglycine Length = 337 Back     alignment and structure
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase Loc390245 Length = 358 Back     alignment and structure
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With A-Ketoglutarate Length = 373 Back     alignment and structure
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain Length = 348 Back     alignment and structure
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a Length = 348 Back     alignment and structure
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36 Peptide Length = 347 Back     alignment and structure
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 352 Back     alignment and structure
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3 Peptide Trimethylated At Lys9 Length = 381 Back     alignment and structure
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query220
3dxt_A354 JMJC domain-containing histone demethylation PROT; 8e-22
2ox0_A381 JMJC domain-containing histone demethylation PROT; 7e-21
3opt_A373 DNA damage-responsive transcriptional repressor R; 7e-19
3avr_A 531 Lysine-specific demethylase 6A; cupin superfamily, 1e-14
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 1e-11
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 1e-11
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 2w2i_A* Length = 354 Back     alignment and structure
 Score = 90.8 bits (224), Expect = 8e-22
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 30/230 (13%)

Query: 3   MYFKSDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFA 62
            +  +        + +  ++E ++W +      +  ++ A I                  
Sbjct: 102 RHLANSKKYQTPPHQNFEDLERKYWKNRIY---NSPIYGADISGSLFDEN---------- 148

Query: 63  KHPWNLKVLTNNSASILRSLNSLVDRISFGKI--------------DFGFEIIEFLLPIS 108
              WNL  L      + +    +++ ++   +              D     I +L    
Sbjct: 149 TKQWNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGE 208

Query: 109 P--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPPSLLTEKGVSLSRVVQE 166
           P   Y +P EH          LFP   R     +L   VA+I P++L E G+  +R+ QE
Sbjct: 209 PKTWYVVPPEHGQRLERLARELFPGSSR-GCGAFLRHKVALISPTVLKENGIPFNRITQE 267

Query: 167 PGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIYKTRQYC 216
            G+F++ FP  + +    G+  AE++ FA P W+   +   +        
Sbjct: 268 AGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCSCGEARV 317
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Length = 381 Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Length = 373 Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Length = 531 Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* Length = 510 Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Length = 332 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
3dxt_A354 JMJC domain-containing histone demethylation PROT; 100.0
2ox0_A381 JMJC domain-containing histone demethylation PROT; 100.0
3opt_A373 DNA damage-responsive transcriptional repressor R; 100.0
2xxz_A332 Lysine-specific demethylase 6B; oxidoreductase, hi 100.0
3avr_A 531 Lysine-specific demethylase 6A; cupin superfamily, 100.0
4ask_A 510 Lysine-specific demethylase 6B; oxidoreductase, KD 100.0
2ypd_A392 Probable JMJC domain-containing histone demethyla 97.92
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 96.1
3k3o_A371 PHF8, PHD finger protein 8; histone demethylase, c 95.98
3pua_A392 GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe 95.76
4gjz_A235 Lysine-specific demethylase 8; JMJC, beta barrel, 95.65
3kv9_A397 JMJC domain-containing histone demethylation prote 95.56
3k2o_A336 Bifunctional arginine demethylase and lysyl-hydro 95.49
3kv5_D488 JMJC domain-containing histone demethylation prote 95.29
2yu1_A 451 JMJC domain-containing histone demethylation PROT; 94.87
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 94.52
3d8c_A349 Hypoxia-inducible factor 1 alpha inhibitor; FIH, H 90.22
3al5_A338 HTYW5, JMJC domain-containing protein C2ORF60; tRN 82.87
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A* Back     alignment and structure
Probab=100.00  E-value=3.1e-60  Score=428.22  Aligned_cols=189  Identities=25%  Similarity=0.487  Sum_probs=175.5

Q ss_pred             CCCCCCCCCCCChHHHHHHHHhhccCCCCceeEEeecccCCCCCCCCCCCCCCCccccccccCccCCCCCchHHhhcc-c
Q psy8915           7 SDNPNDPGSNPSPAEVESEFWNHVTNRMLHICVHSASIDTGSNGCGFPTAKNSTFAKHPWNLKVLTNNSASILRSLNS-L   85 (220)
Q Consensus         7 ~~~~~~~~~~~~~~~iE~~yW~~v~~~~~~v~V~gadl~s~~~Gsgfp~~~~~~y~~~~WNL~nlp~~~~SlL~~l~~-i   85 (220)
                      ++++.+|.+ .+.++||++|||++....   +.||||++    ||+||..      .++|||+|||...++||++++. |
T Consensus       107 ~~~~~~p~~-~~~~~lE~~fW~~~~~~~---p~YgaD~~----gS~F~~~------~~~WNL~~L~~~~~~Ll~~~~~~I  172 (354)
T 3dxt_A          107 SKKYQTPPH-QNFEDLERKYWKNRIYNS---PIYGADIS----GSLFDEN------TKQWNLGHLGTIQDLLEKECGVVI  172 (354)
T ss_dssp             STTTSCCCC-SSHHHHHHHHHHHGGGCC---CEEEEEEE----CCCSCTT------CCSSCTTSSCCHHHHHHHHHCCCC
T ss_pred             hhhccCCCC-CCHHHHHHHHhhhcccCC---ceeeecCC----CcccCCC------cchhhhhhccchhHHHHhhcCCCC
Confidence            455667655 589999999999998765   57899998    9999986      6899999999999999999985 9


Q ss_pred             cCc----eeec---------ccccccceeeeeeCCCC--ceecCcchHHHHHHHHHhhccchhhcCCCccccccccccCc
Q psy8915          86 VDR----ISFG---------KIDFGFEIIEFLLPISP--RYGIPDEHSTAFRSTMMSLFPHYCRSDKTIWLSSDVAMIPP  150 (220)
Q Consensus        86 ~G~----lyvG---------~ED~~l~SinYlH~G~p--WY~IP~~~~~kfe~~~~~~~p~~~~~~~~~~l~h~~~~i~P  150 (220)
                      +||    ||+|         +||++|+||||+|+|+|  ||+||+++++|||++|++.+|++++ .|+++|+|++++++|
T Consensus       173 ~GVntP~LYiGm~~Stf~WH~ED~~L~SINYlH~GapK~WY~VP~~~~~kfE~l~k~~~p~~~~-~c~~fL~h~~~lisP  251 (354)
T 3dxt_A          173 EGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKTWYVVPPEHGQRLERLARELFPGSSR-GCGAFLRHKVALISP  251 (354)
T ss_dssp             CCCCCCEEEEECTTCEEEEECCGGGCEEEEEEEEESCEEEEEECGGGHHHHHHHHHHHSHHHHH-HCTTGGGGCCEEECH
T ss_pred             CCccceeeeeccccCCCcceecCCcceEEEEEecCCceEEEEeCHHHHHHHHHHHHHhCchhhh-hcHHHHhcCcccCCH
Confidence            999    9999         89999999999999999  9999999999999999999999988 578899999999999


Q ss_pred             hhhhhcCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHHHH
Q psy8915         151 SLLTEKGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFKIY  210 (220)
Q Consensus       151 ~~L~~~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~~y  210 (220)
                      +.|+++||||++++|+|||||||||++||+|||+||||+||||||+++||++|+.|.+..
T Consensus       252 ~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~Wl~~g~~A~~C~  311 (354)
T 3dxt_A          252 TVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMASQCS  311 (354)
T ss_dssp             HHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGGGHHHHHHCCCCC
T ss_pred             HHHHHCCCceEEEEeCCCcEEEECCCceEEEeeccccHhHhhccCcHHHHHhhhhccccc
Confidence            999999999999999999999999999999999999999999999999999999886544
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A* Back     alignment and structure
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A* Back     alignment and structure
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens} Back     alignment and structure
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A* Back     alignment and structure
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A* Back     alignment and structure
>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A* Back     alignment and structure
>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A* Back     alignment and structure
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A* Back     alignment and structure
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A* Back     alignment and structure
>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ... Back     alignment and structure
>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query220
d1vrba1319 Putative asparaginyl hydroxylase YxbC {Bacillus su 96.64
d1h2ka_335 Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum 95.35
>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.64  E-value=0.00071  Score=55.91  Aligned_cols=53  Identities=17%  Similarity=0.293  Sum_probs=47.5

Q ss_pred             cCCceeEeeeCCCcEEEEccCcceeecccCccceeecccCCcccHHHHHHHHH
Q psy8915         156 KGVSLSRVVQEPGQFILVFPSAFTSSIATGYLVAESVYFARPSWLSTCERVFK  208 (220)
Q Consensus       156 ~gI~v~~~~Q~pGefvvtfP~aYh~gfn~G~n~aEavnFa~~~Wl~~g~~~~~  208 (220)
                      .+.+.+.++++||+.+..-++-+|.+.|.+-+++-+++|..++|.+.-..+++
T Consensus       194 ~~~~~~~~~L~pGDvLYiP~gw~H~v~s~~~sis~sv~f~~~~~~d~~~~~~~  246 (319)
T d1vrba1         194 DLPDAEIVNLTPGTMLYLPRGLWHSTKSDQATLALNITFGQPAWLDLMLAALR  246 (319)
T ss_dssp             TCCSSEEEEECTTCEEEECTTCEEEEECSSCEEEEEEEECCCBHHHHHHHHHH
T ss_pred             hcCccEEEEECCCCEEEeCCCceEEeEecCCeEEEEEEecCCCHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999998655554
>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure