Psyllid ID: psy8925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MNETKKSLYPSSLNKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccHHHHccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHccccEEEEEEEEEEEccccccccHHHEEEEEEEEEHHHHHc
Coil and Loop (DISEMBL)
mnetkkslypsslnkekeqqpqenttttavttpeveselmikhplhnkwtlwyfendknkgweenqREITsfstvedfww
Flexible Loop (DISEMBL)
mnetkkslypsslnkekeqqpqenttttavttpeveSELMIKHPLHNKWTLWYFENDknkgweenqreitsfstvedfww
Low Complexity Region (SEG)
MNETKKSLYPSSLNKEKEQQPQENttttavttPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW
Disordered region (IsUnstruct)
**************************************LMIKHPLHNKWTLWYFENDKNKGWE*****ITSFSTVEDF**
Disordered Region (DISOPRED)
*****************************************KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW
Disordered Region (DISEMBL)
*****************************VTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSF********
Disordered Region (DISPRO)
*********************************EVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNETKKSLYPSSLNKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
P48598	259	Eukaryotic translation in	yes	N/A	0.75	0.231	0.564	4e-13
O77210	215	Eukaryotic translation in	N/A	N/A	0.55	0.204	0.545	1e-10
Q9DFS6	215	Eukaryotic translation in	no	N/A	0.562	0.209	0.6	3e-10
P48597	213	Eukaryotic translation in	N/A	N/A	0.562	0.211	0.577	5e-10
Q9N0T5	217	Eukaryotic translation in	yes	N/A	0.525	0.193	0.619	5e-10
P06730	217	Eukaryotic translation in	no	N/A	0.525	0.193	0.619	5e-10
P29338	217	Eukaryotic translation in	yes	N/A	0.525	0.193	0.619	5e-10
P63074	217	Eukaryotic translation in	yes	N/A	0.525	0.193	0.619	5e-10
P63073	217	Eukaryotic translation in	yes	N/A	0.525	0.193	0.619	5e-10
Q9PW28	214	Eukaryotic translation in	no	N/A	0.562	0.210	0.555	8e-10

>sp|P48598|IF4E_DROME Eukaryotic translation initiation factor 4E OS=Drosophila melanogaster GN=eIF-4E PE=1 SV=1

 Score = 73.6 bits (179), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 20  QPQENTTTTAVTTPE--VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVED 77
           +P  NT TT     +  V +E + KHPL N WTLWY END++K WE+ Q EITSF TVED
Sbjct: 56  EPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVED 115

Query: 78  FW 79
           FW
Sbjct: 116 FW 117

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.
Drosophila melanogaster (taxid: 7227)

>sp|O77210|IF4E_APLCA Eukaryotic translation initiation factor 4E OS=Aplysia californica PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 36/44 (81%)

Query: 36 ESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          + +++IKHPL N W +W+F+NDK++ W++N R IT+F TVEDFW
Sbjct: 28 DPDMVIKHPLQNSWAMWFFKNDKSRDWKDNLRVITTFDTVEDFW 71

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Aplysia californica (taxid: 6500)

>sp|Q9DFS6|IF4EA_DANRE Eukaryotic translation initiation factor 4E-1A OS=Danio rerio GN=eif4e1a PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          V  E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 27 VSLEDYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 71

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures.

Danio rerio (taxid: 7955)

>sp|P48597|IF4E_XENLA Eukaryotic translation initiation factor 4E OS=Xenopus laevis GN=eif4e PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          V  +  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 25 VSPDQYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 69

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Maternal RNA in oocytes remain in a dormant state as tacc3/maskin outcompetes eif4g to bind eif4e, thereby preventing translation. During oocyte maturation this complex dissolves and eif4g binds eif4e to allow translation of maternal RNAs.

Xenopus laevis (taxid: 8355)

>sp|Q9N0T5|IF4E_BOVIN Eukaryotic translation initiation factor 4E OS=Bos taurus GN=EIF4E PE=2 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap.

Bos taurus (taxid: 9913)

>sp|P06730|IF4E_HUMAN Eukaryotic translation initiation factor 4E OS=Homo sapiens GN=EIF4E PE=1 SV=2

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

Its translation stimulation activity is repressed by binding to the complex CYFIP1-FMR1 (By similarity). Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap.

Homo sapiens (taxid: 9606)

>sp|P29338|IF4E_RABIT Eukaryotic translation initiation factor 4E OS=Oryctolagus cuniculus GN=EIF4E PE=1 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap.

Oryctolagus cuniculus (taxid: 9986)

>sp|P63074|IF4E_RAT Eukaryotic translation initiation factor 4E OS=Rattus norvegicus GN=Eif4e PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap (By similarity). Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. May play an important role in spermatogenesis through translational regulation of stage-specific mRNAs during germ cell development.

Rattus norvegicus (taxid: 10116)

>sp|P63073|IF4E_MOUSE Eukaryotic translation initiation factor 4E OS=Mus musculus GN=Eif4e PE=1 SV=1

 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 32 EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

Recognizes and binds the 7-methylguanosine-containing mRNA cap during an early step in the initiation of protein synthesis and facilitates ribosome binding by inducing the unwinding of the mRNAs secondary structures. May play an important role in spermatogenesis through translational regulation of stage-specific mRNAs during germ cell development (By similarity). Its translation stimulation activity is repressed by binding to the complex CYFIP1-FMR1. Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit mediates the binding to the mRNA cap.

Mus musculus (taxid: 10090)

>sp|Q9PW28|IF4EB_DANRE Eukaryotic translation initiation factor 4E-1B OS=Danio rerio GN=eif4e1b PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          +  E  +KHPL N+W LW+++NDK+K W++N R IT F TVEDFW
Sbjct: 26 ILKEPCMKHPLQNRWGLWFYKNDKSKMWQDNLRLITKFDTVEDFW 70

Does not appear to be a mRNA-cap-binding protein.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
357613965	210	mRNA cap-binding protein eIF4E [Danaus p	0.7	0.266	0.610	2e-13
307205416	320	Eukaryotic translation initiation factor	0.662	0.165	0.660	1e-12
443696499	222	hypothetical protein CAPTEDRAFT_222296 [	0.75	0.270	0.532	2e-12
307189344	214	Eukaryotic translation initiation factor	0.662	0.247	0.660	3e-12
15290529	210	mRNA cap-binding protein eIF4E [Spodopte	0.825	0.314	0.515	7e-12
198425050	233	PREDICTED: similar to MGC85107 protein [	0.95	0.326	0.451	9e-12
17864468	259	eukaryotic initiation factor 4E, isoform	0.75	0.231	0.564	2e-11
195589019	269	GD12928 [Drosophila simulans] gi|1941962	0.812	0.241	0.542	2e-11
24661542	248	eukaryotic initiation factor 4E, isoform	0.75	0.241	0.564	2e-11
195490867	269	GE21247 [Drosophila yakuba] gi|194179421	0.75	0.223	0.564	2e-11

>gi|357613965|gb|EHJ68814.1| mRNA cap-binding protein eIF4E [Danaus plexippus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 43/59 (72%), Gaps = 3/59 (5%)

Query: 21 PQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          P EN TT  V  P    E +IKHPL N W+LW+++ND+NK WEENQ E+TSF TVEDFW
Sbjct: 14 PAENKTTGTVEVP---PEFLIKHPLQNTWSLWFYDNDRNKSWEENQIELTSFDTVEDFW 69

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307205416|gb|EFN83757.1| Eukaryotic translation initiation factor 4E [Harpegnathos saltator]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 40/53 (75%)

Query: 27  TTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
           T AV + E   E +IKHPL N WTLWY+E DK+K WEE+QREITSF T EDFW
Sbjct: 124 TEAVNSGEFPPEYLIKHPLQNTWTLWYYEPDKSKSWEESQREITSFDTAEDFW 176

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443696499|gb|ELT97193.1| hypothetical protein CAPTEDRAFT_222296 [Capitella teleta]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 2/62 (3%)

Query: 18 EQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVED 77
          +QQ +E+     V+ P+   EL+IKHPLHN+W LWYF+NDK K W  N + +T+F TVED
Sbjct: 19 DQQQEEDEILGEVSIPD--PELLIKHPLHNRWALWYFKNDKTKDWHANLKVVTAFDTVED 76

Query: 78 FW 79
          FW
Sbjct: 77 FW 78

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307189344|gb|EFN73765.1| Eukaryotic translation initiation factor 4E [Camponotus floridanus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 38/53 (71%)

Query: 27 TTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          T    T E   E +IKHPL N WTLWY+E DKNK WEE+QREITSF T EDFW
Sbjct: 18 TEVTNTGEFPPEYLIKHPLQNTWTLWYYEPDKNKSWEESQREITSFDTAEDFW 70

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|15290529|gb|AAK94897.1|AF281654_1 mRNA cap-binding protein eIF4E [Spodoptera frugiperda]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query: 14 NKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFS 73
          N  +E +    T T   T  EV  E +IKHPL N W+LW+++ND+NK WEEN  E+T+F 
Sbjct: 4  NNTEEVEGSATTETKGTTNAEVPPEFLIKHPLQNTWSLWFYDNDRNKTWEENLIELTTFD 63

Query: 74 TVEDFW 79
          TVEDFW
Sbjct: 64 TVEDFW 69

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198425050|ref|XP_002126987.1| PREDICTED: similar to MGC85107 protein [Ciona intestinalis]

 Score = 74.3 bits (181), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 6/82 (7%)

Query: 4  TKKSLYPSSLNKEKEQQPQENTTTTAVTTPEVESELM------IKHPLHNKWTLWYFEND 57
           K SL P +  K KE Q ++   T ++    +E + M      IKHPL NKW LW+F+ND
Sbjct: 8  VKVSLDPGARPKSKESQEEKEVKTVSLKEDVIEEKPMGDPEDCIKHPLQNKWALWFFKND 67

Query: 58 KNKGWEENQREITSFSTVEDFW 79
          + K WE+N R +T F TVEDFW
Sbjct: 68 RQKKWEDNLRLVTKFDTVEDFW 89

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|17864468|ref|NP_524829.1| eukaryotic initiation factor 4E, isoform B [Drosophila melanogaster] gi|24661546|ref|NP_729481.1| eukaryotic initiation factor 4E, isoform A [Drosophila melanogaster] gi|24661553|ref|NP_729482.1| eukaryotic initiation factor 4E, isoform D [Drosophila melanogaster] gi|24661557|ref|NP_729483.1| eukaryotic initiation factor 4E, isoform E [Drosophila melanogaster] gi|24661561|ref|NP_729484.1| eukaryotic initiation factor 4E, isoform F [Drosophila melanogaster] gi|24661565|ref|NP_729485.1| eukaryotic initiation factor 4E, isoform G [Drosophila melanogaster] gi|442631284|ref|NP_001261626.1| eukaryotic initiation factor 4E, isoform H [Drosophila melanogaster] gi|442631286|ref|NP_001261627.1| eukaryotic initiation factor 4E, isoform I [Drosophila melanogaster] gi|1352434|sp|P48598.1|IF4E_DROME RecName: Full=Eukaryotic translation initiation factor 4E; Short=eIF-4E; Short=eIF4E; AltName: Full=eIF-4F 25 kDa subunit; AltName: Full=mRNA cap-binding protein gi|565636|gb|AAC46603.1| translation initiation factor [Drosophila melanogaster] gi|1322285|gb|AAC03525.1| eukaryotic initiation factor 4E-I [Drosophila melanogaster] gi|1888503|gb|AAC47480.1| eukaryotic initiation factor eIF-4E1 [Drosophila melanogaster] gi|7294953|gb|AAF50282.1| eukaryotic initiation factor 4E, isoform B [Drosophila melanogaster] gi|7294954|gb|AAF50283.1| eukaryotic initiation factor 4E, isoform A [Drosophila melanogaster] gi|23093813|gb|AAN11963.1| eukaryotic initiation factor 4E, isoform D [Drosophila melanogaster] gi|23093814|gb|AAN11964.1| eukaryotic initiation factor 4E, isoform E [Drosophila melanogaster] gi|23093815|gb|AAN11965.1| eukaryotic initiation factor 4E, isoform F [Drosophila melanogaster] gi|23093816|gb|AAN11966.1| eukaryotic initiation factor 4E, isoform G [Drosophila melanogaster] gi|201065749|gb|ACH92284.1| FI05365p [Drosophila melanogaster] gi|440215538|gb|AGB94321.1| eukaryotic initiation factor 4E, isoform H [Drosophila melanogaster] gi|440215539|gb|AGB94322.1| eukaryotic initiation factor 4E, isoform I [Drosophila melanogaster] gi|1096151|prf||2111242A initiation factor 4E

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 20  QPQENTTTTAVTTPE--VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVED 77
           +P  NT TT     +  V +E + KHPL N WTLWY END++K WE+ Q EITSF TVED
Sbjct: 56  EPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVED 115

Query: 78  FW 79
           FW
Sbjct: 116 FW 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195589019|ref|XP_002084254.1| GD12928 [Drosophila simulans] gi|194196263|gb|EDX09839.1| GD12928 [Drosophila simulans]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 15  KEKEQQPQENTTTTAVTTP-----EVESELMIKHPLHNKWTLWYFENDKNKGWEENQREI 69
           KE  Q+  E   +TA TT       V +E + KHPL N WTLWY END++K WE+ Q EI
Sbjct: 58  KEDPQETGEPAGSTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEI 117

Query: 70  TSFSTVEDFW 79
           TSF TVEDFW
Sbjct: 118 TSFDTVEDFW 127

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24661542|ref|NP_729480.1| eukaryotic initiation factor 4E, isoform C [Drosophila melanogaster] gi|402550233|pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex gi|402550234|pdb|4AXG|B Chain B, Structure Of Eif4e-Cup Complex gi|1322284|gb|AAC03524.1| eukaryotic initiation factor 4E-II [Drosophila melanogaster] gi|1888502|gb|AAC47479.1| eukaryotic initiation factor eIF-4E2 [Drosophila melanogaster] gi|7294952|gb|AAF50281.1| eukaryotic initiation factor 4E, isoform C [Drosophila melanogaster] gi|46409162|gb|AAS93738.1| RE36735p [Drosophila melanogaster] gi|220951126|gb|ACL88106.1| eIF-4E-PC [synthetic construct] gi|220959660|gb|ACL92373.1| eIF-4E-PC [synthetic construct]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 20  QPQENTTTTAVTTPE--VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVED 77
           +P  NT TT     +  V +E + KHPL N WTLWY END++K WE+ Q EITSF TVED
Sbjct: 45  EPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVED 104

Query: 78  FW 79
           FW
Sbjct: 105 FW 106

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195490867|ref|XP_002093320.1| GE21247 [Drosophila yakuba] gi|194179421|gb|EDW93032.1| GE21247 [Drosophila yakuba]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 2/62 (3%)

Query: 20  QPQENTTTTAVTTPE--VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVED 77
           +P  NT TT     +  V +E + KHPL N WTLWY END++K WE+ Q EITSF TVED
Sbjct: 66  EPAGNTATTNAPAGDDAVRTEHLFKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVED 125

Query: 78  FW 79
           FW
Sbjct: 126 FW 127

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0015218	259	eIF-4E "Eukaryotic initiation	0.912	0.281	0.447	6.2e-14
FB|FBgn0035709	229	eIF4E-4 "eIF4E-4" [Drosophila	0.525	0.183	0.666	2.1e-13
UNIPROTKB|F1NI97	215	EIF4E "Uncharacterized protein	0.75	0.279	0.524	3.4e-13
ZFIN|ZDB-GENE-050417-398	230	eif4e1c "eukaryotic translatio	0.887	0.308	0.44	3.4e-13
UNIPROTKB|Q9NB22	197	Q9NB22 "EIF4E" [Pisaster ochra	0.562	0.228	0.622	7.1e-13
UNIPROTKB|D6RBW1	245	EIF4E "Eukaryotic translation	0.85	0.277	0.438	2.4e-12
ZFIN|ZDB-GENE-980526-127	214	eif4e1b "eukaryotic translatio	0.587	0.219	0.553	2.4e-12
ZFIN|ZDB-GENE-041121-14	216	eif4eb "eukaryotic translation	0.562	0.208	0.6	3.9e-12
UNIPROTKB|P48597	213	eif4e "Eukaryotic translation	0.737	0.276	0.474	5e-12
UNIPROTKB|H0Y8J7	155	EIF4E "Eukaryotic translation	0.837	0.432	0.441	6.4e-12

FB|FBgn0015218 eIF-4E "Eukaryotic initiation factor 4E" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 34/76 (44%), Positives = 45/76 (59%)

Query:     6 KSLYPSSLNKEKEQQPQENXXXXXXXXPE--VESELMIKHPLHNKWTLWYFENDKNKGWE 63
             K + P   + ++  +P  N         +  V +E + KHPL N WTLWY END++K WE
Sbjct:    43 KDVKPKE-DPQETGEPAGNTATTTAPAGDDAVRTEHLYKHPLMNVWTLWYLENDRSKSWE 101

Query:    64 ENQREITSFSTVEDFW 79
             + Q EITSF TVEDFW
Sbjct:   102 DMQNEITSFDTVEDFW 117

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;NAS;IDA;IPI

GO:0006412 "translation" evidence=ISS;NAS;IDA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS;NAS;IDA

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0016070 "RNA metabolic process" evidence=NAS;IDA

GO:0006413 "translational initiation" evidence=IGI;NAS;IDA

GO:0000339 "RNA cap binding" evidence=ISS;NAS;IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0016321 "female meiosis chromosome segregation" evidence=IMP

GO:0007076 "mitotic chromosome condensation" evidence=IMP

GO:0006325 "chromatin organization" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=TAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0014069 "postsynaptic density" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009790 "embryo development" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0035709 eIF4E-4 "eIF4E-4" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 28/42 (66%), Positives = 33/42 (78%)

Query:    38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
             +L +KHPL N WTLWY END++K WE+ Q EITSF  VEDFW
Sbjct:    47 DLRLKHPLENTWTLWYLENDRSKNWEDMQNEITSFDMVEDFW 88

GO:0003743 "translation initiation factor activity" evidence=IGI;ISS

GO:0006413 "translational initiation" evidence=IGI;ISS

GO:0016281 "eukaryotic translation initiation factor 4F complex" evidence=ISS;IPI

GO:0000339 "RNA cap binding" evidence=ISS

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NI97 EIF4E "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 32/61 (52%), Positives = 38/61 (62%)

Query:    20 QPQENXXXXXXXXPEVES-ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDF 78
             QP E          EV S E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDF
Sbjct:    11 QPSEEEKTEPAPTQEVASPEQYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDF 70

Query:    79 W 79
             W
Sbjct:    71 W 71

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=IEA

GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0010494 "cytoplasmic stress granule" evidence=IEA

GO:0016442 "RNA-induced silencing complex" evidence=IEA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IEA

ZFIN|ZDB-GENE-050417-398 eif4e1c "eukaryotic translation initiation factor 4E family member 1c" [Danio rerio (taxid:7955)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/75 (44%), Positives = 41/75 (54%)

Query:     5 KKSLYPSSLNKEKEQQPQENXXXXXXXXPEVESELMIKHPLHNKWTLWYFENDKNKGWEE 64
             + S  P     E E+   ++        PE      IKHPL N+W LWYF+NDK+K W E
Sbjct:    16 RASQLPEMRGTETEEVRSDSPTAVVTTSPEQ----YIKHPLQNRWALWYFKNDKSKSWTE 71

Query:    65 NQREITSFSTVEDFW 79
             N R I+ F TVEDFW
Sbjct:    72 NLRLISKFDTVEDFW 86

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9NB22 Q9NB22 "EIF4E" [Pisaster ochraceus (taxid:7612)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 28/45 (62%), Positives = 34/45 (75%)

Query:    35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
             ++ E  IKHPL NKW LW+F+NDK K W +N R IT+F TVEDFW
Sbjct:    10 LQPEQEIKHPLQNKWALWFFKNDKAKSWADNLRVITAFDTVEDFW 54

GO:0006468 "protein phosphorylation" evidence=IDA

GO:2000767 "positive regulation of cytoplasmic translation" evidence=IDA

UNIPROTKB|D6RBW1 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/73 (43%), Positives = 41/73 (56%)

Query:    12 SLNKEKEQQPQENXXXXXXXXPEVESELM-----IKHPLHNKWTLWYFENDKNKGWEENQ 66
             SL + +E  P  N         E   E+      IKHPL N+W LW+F+NDK+K W+ N 
Sbjct:    29 SLRESQETTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANL 88

Query:    67 REITSFSTVEDFW 79
             R I+ F TVEDFW
Sbjct:    89 RLISKFDTVEDFW 101

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

ZFIN|ZDB-GENE-980526-127 eif4e1b "eukaryotic translation initiation factor 4e 1b" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 26/47 (55%), Positives = 35/47 (74%)

Query:    33 PEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
             P +  E  +KHPL N+W LW+++NDK+K W++N R IT F TVEDFW
Sbjct:    24 PNILKEPCMKHPLQNRWGLWFYKNDKSKMWQDNLRLITKFDTVEDFW 70

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0000340 "RNA 7-methylguanosine cap binding" evidence=IDA

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-041121-14 eif4eb "eukaryotic translation initiation factor 4eb" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query:    35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
             V  E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct:    28 VSPESYIKHPLQNRWCLWFFKNDKSKTWQANLRLISKFDTVEDFW 72

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|P48597 eif4e "Eukaryotic translation initiation factor 4E" [Xenopus laevis (taxid:8355)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 28/59 (47%), Positives = 35/59 (59%)

Query:    21 PQENXXXXXXXXPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
             PQ            V  +  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct:    11 PQSTEEEKETGQEIVSPDQYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 69

GO:0005515 "protein binding" evidence=IPI

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0043234 "protein complex" evidence=IPI

UNIPROTKB|H0Y8J7 EIF4E "Eukaryotic translation initiation factor 4E" [Homo sapiens (taxid:9606)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/77 (44%), Positives = 44/77 (57%)

Query:     3 ETKKSLYPSSLNKEKEQQPQENXXXXXXXXPEVESELMIKHPLHNKWTLWYFENDKNKGW 62
             ET  +  P +  +EK +  QE         PE      IKHPL N+W LW+F+NDK+K W
Sbjct:     4 ETTPTPNPPTTEEEKTESNQE------VANPEH----YIKHPLQNRWALWFFKNDKSKTW 53

Query:    63 EENQREITSFSTVEDFW 79
             + N R I+ F TVEDFW
Sbjct:    54 QANLRLISKFDTVEDFW 70

GO:0005737 "cytoplasm" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q75AV8	IF4E_ASHGO	No assigned EC number	0.5121	0.4875	0.1848	yes	N/A
O61955	IF4E3_CAEEL	No assigned EC number	0.5111	0.5625	0.1792	yes	N/A
Q9N0T5	IF4E_BOVIN	No assigned EC number	0.6190	0.525	0.1935	yes	N/A
P29338	IF4E_RABIT	No assigned EC number	0.6190	0.525	0.1935	yes	N/A
P48598	IF4E_DROME	No assigned EC number	0.5645	0.75	0.2316	yes	N/A
P63073	IF4E_MOUSE	No assigned EC number	0.6190	0.525	0.1935	yes	N/A
Q9P974	IF4E_CANGA	No assigned EC number	0.5121	0.4875	0.1866	yes	N/A
P63074	IF4E_RAT	No assigned EC number	0.6190	0.525	0.1935	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
pfam01652	162	pfam01652, IF4E, Eukaryotic initiation factor 4E	2e-12
COG5053	217	COG5053, CDC33, Translation initiation factor 4E (	3e-09

>gnl|CDD|216628 pfam01652, IF4E, Eukaryotic initiation factor 4E

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 3/40 (7%)

Query: 44 PLHNKWTLWYF---ENDKNKGWEENQREITSFSTVEDFWW 80
          PL NKWTLWY      DK+K +E+N + I +F TVEDFW 
Sbjct: 1  PLQNKWTLWYDRRPPGDKSKDYEDNLKPIGTFDTVEDFWR 40

Length = 162

>gnl|CDD|227386 COG5053, CDC33, Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

 Score = 50.7 bits (121), Expect = 3e-09
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 7  SLYPSSLNKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEE 64
                  +     P   T  T ++     +  M KHPL   WTLW+ +   D  + W +
Sbjct: 4  EEVSKKFEENVSVDPTTKTPRTVLSD---SAHFMNKHPLAFHWTLWFLKPPEDGLESWSD 60

Query: 65 NQREITSFSTVEDFW 79
            + I +F TVE+FW
Sbjct: 61 LLKSIITFETVEEFW 75

Length = 217

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG1670|consensus	212		99.56
PTZ00040	233	translation initiation factor E4; Provisional	99.39
KOG1669|consensus	208		99.13
PF01652	165	IF4E: Eukaryotic initiation factor 4E; InterPro: I	99.13
COG5053	217	CDC33 Translation initiation factor 4E (eIF-4E) [T	98.83

>KOG1670|consensus

Probab=99.56  E-value=1.5e-15  Score=111.63  Aligned_cols=47  Identities=53%  Similarity=1.143  Sum_probs=42.6

Q ss_pred             ccccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          34 EVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        34 ~~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      .+.|....+||||+.|||||..++++.+|+++|+.|++|+|||+||+
T Consensus        26 ~~~~~~~~~hpL~~~WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~   72 (212)
T KOG1670|consen   26 SAKPENHIKHPLQNNWTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWS   72 (212)
T ss_pred             ccCcccccccccccceeEEeecCCccccHHHHhhhccccccHHHHHH
Confidence            33566667899999999999999998899999999999999999995

>PTZ00040 translation initiation factor E4; Provisional

Probab=99.39  E-value=1.8e-13  Score=101.59  Aligned_cols=42  Identities=29%  Similarity=0.695  Sum_probs=36.9

Q ss_pred             cccCCCCccccEEeEEcCC----ccccHhhccceeeeecchhhccC
Q psy8925          39 LMIKHPLHNKWTLWYFEND----KNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        39 ~~~~HPLq~~WtfWy~~~~----k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ....|||++.|||||+.+.    +..+|+++|++|++|+|||+||+
T Consensus        34 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~y~~~lk~I~sF~TVEeFW~   79 (233)
T PTZ00040         34 LSTPLPLSYKWVIWEQVVKETIRKSNDYKDYTKPLASFDSVQKFWQ   79 (233)
T ss_pred             cCCCCcCCCcEEEEEEcCcccCcchhhHHHhceEEeEEccHHHHHH
Confidence            4557999999999998763    45789999999999999999995

>KOG1669|consensus

Probab=99.13  E-value=1.5e-11  Score=89.71  Aligned_cols=61  Identities=23%  Similarity=0.577  Sum_probs=52.1

Q ss_pred             CCCCCCCccccCCCccccccccCCCCccccEEeEEcCCc---cccHhhccceeeeecchhhccC
Q psy8925          20 QPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDK---NKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~HPLq~~WtfWy~~~~k---~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      +++...++..+....|+..+.+.||||+..+|||.++..   .++|+++|++|++|.|||+||+
T Consensus         7 ek~~~vkn~~s~~r~a~v~~d~dh~l~y~~t~~y~~r~~Gv~~qsYe~~ik~i~t~~SvE~fw~   70 (208)
T KOG1669|consen    7 EKSHYVKNSVSEERRARVLMDMDHPLQYVYTFWYERRTPGVSKQSYEKNIKSIGTFESVEQFWY   70 (208)
T ss_pred             hhhhhhccchhhhhccccCCCCCCcceEEEEEEEEecCCCCChhhHHHHhHhheeeeeHHHHHH
Confidence            455566677777777888888999999999999999743   5889999999999999999994

>PF01652 IF4E: Eukaryotic initiation factor 4E; InterPro: IPR001040 Eukaryotic translation initiation factor 4E (eIF-4E) [] is a protein that binds to the cap structure of eukaryotic cellular mRNAs

Probab=99.13  E-value=1.5e-11  Score=84.78  Aligned_cols=37  Identities=49%  Similarity=1.069  Sum_probs=33.1

Q ss_pred             CCccccEEeEEcC---CccccHhhccceeeeecchhhccC
Q psy8925          44 PLHNKWTLWYFEN---DKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        44 PLq~~WtfWy~~~---~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ||++.|||||+..   ++..+|.++|++|++|+|||+||+
T Consensus         1 pL~~~Wt~w~~~~~~~~~~~~y~~~l~~i~~f~TvE~Fw~   40 (165)
T PF01652_consen    1 PLQNKWTFWYDKKQKNSKSDDYEDSLKPIGTFSTVEEFWS   40 (165)
T ss_dssp             EEEEEEEEEEEECCCCCTTSCTGGGEEEEEEEEEHHHHHH
T ss_pred             CcCCEEEEEEEecCCCCchhhhhhhceEEEEEEeHHHHHH
Confidence            8999999999953   345899999999999999999995

eIF-4E recognises and binds the 7-methylguanosine-containing (m7Gppp) cap during an early step in the initiation of protein synthesis and facilitates ribosome binding to a mRNA by inducing the unwinding of its secondary structures. A tryptophan in the central part of the sequence of human eIF-4E seems to be implicated in cap-binding [].; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation, 0005737 cytoplasm; PDB: 2JGB_A 2JGC_A 1L8B_A 1EJ1_A 1EJH_A 1EJ4_A 1AP8_A 1RF8_A 2WMC_G 2IDR_B ....

>COG5053 CDC33 Translation initiation factor 4E (eIF-4E) [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.5e-09  Score=80.01  Aligned_cols=44  Identities=39%  Similarity=0.976  Sum_probs=37.9

Q ss_pred             cccccCCCCccccEEeEEcCCc--cccHhhccceeeeecchhhccC
Q psy8925          37 SELMIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        37 ~~~~~~HPLq~~WtfWy~~~~k--~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      .....+|||+..|||||..++.  .+.|.+.|+.|++|+|||+||.
T Consensus        31 ~~f~~~hpl~~~wtlw~l~p~e~g~esw~dlLk~I~tf~Tveefwy   76 (217)
T COG5053          31 AHFMNKHPLAFHWTLWFLKPPEDGLESWSDLLKSIITFETVEEFWY   76 (217)
T ss_pred             hhHhhcCccccceEEEEecCCccchhHHHHHHhhheeeecHHHHHH
Confidence            4456779999999999998743  4569999999999999999994

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
4axg_A	248	Structure Of Eif4e-Cup Complex Length = 248		8e-13
1ipb_A	217	Crystal Structure Of Eukaryotic Initiation Factor 4		6e-11
4dt6_A	240	Co-Crystal Structure Of Eif4e With Inhibitor Length		7e-11
1wkw_A	191	Crystal Structure Of The Ternary Complex Of Eif4e-M		7e-11
1ej1_A	190	Cocrystal Structure Of The Messenger Rna 5' Cap-Bin		8e-11
2w97_B	217	Crystal Structure Of Eif4e Bound To Glycerol And Ei		3e-10
3m93_A	189	Complex Crystal Structure Of Ascaris Suum Eif4e-3 W		1e-07
1rf8_A	213	Solution Structure Of The Yeast Translation Initiat		1e-06
1ap8_A	213	Translation Initiation Factor Eif4e In Complex With		1e-06
3hxg_A	189	Crystal Structure Of Schistsome Eif4e Complexed Wit		2e-04

>pdb|4AXG|A Chain A, Structure Of Eif4e-Cup Complex Length = 248

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/45 (66%), Positives = 35/45 (77%)
Query: 35  VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
           V +E + KHPL N WTLWY END++K WE+ Q EITSF TVEDFW
Sbjct: 62  VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFW 106

>pdb|1IPB|A Chain A, Crystal Structure Of Eukaryotic Initiation Factor 4e Complexed With 7-methyl Gpppa Length = 217

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 35 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 73

>pdb|4DT6|A Chain A, Co-Crystal Structure Of Eif4e With Inhibitor Length = 240

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 58 IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 96

>pdb|1WKW|A Chain A, Crystal Structure Of The Ternary Complex Of Eif4e-M7gpppa- 4ebp1 Peptide Length = 191

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 9  IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 47

>pdb|1EJ1|A Chain A, Cocrystal Structure Of The Messenger Rna 5' Cap-Binding Protein (Eif4e) Bound To 7-Methyl-Gdp Length = 190

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 8  IKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 46

>pdb|2W97|B Chain B, Crystal Structure Of Eif4e Bound To Glycerol And Eif4g1 Peptide Length = 217

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          IKHPL N+W LW+F+ DK+K W+ N R I+ F TVEDFW
Sbjct: 35 IKHPLQNRWALWFFKKDKSKTWQANLRLISKFDTVEDFW 73

>pdb|3M93|A Chain A, Complex Crystal Structure Of Ascaris Suum Eif4e-3 With M7g Cap Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          ++HPL   W LWY + D++K WE+  +++  F TVEDFW
Sbjct: 1  MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFW 39

>pdb|1RF8|A Chain A, Solution Structure Of The Yeast Translation Initiation Factor Eif4e In Complex With M7gdp And Eif4gi Residues 393 To 490 Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 41 IKHPLHNKWTLWYFE--NDKNKGWEENQREITSFSTVEDFW 79
          +KHPL+ KWTLWY +   DK++ W +  R +TSF TVE+FW
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFW 75

>pdb|1AP8|A Chain A, Translation Initiation Factor Eif4e In Complex With M7gdp, Nmr, 20 Structures Length = 213

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 41 IKHPLHNKWTLWYFE--NDKNKGWEENQREITSFSTVEDFW 79
          +KHPL+ KWTLWY +   DK++ W +  R +TSF TVE+FW
Sbjct: 35 VKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFW 75

>pdb|3HXG|A Chain A, Crystal Structure Of Schistsome Eif4e Complexed With M7gpppa And 4e-Bp Length = 189

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 43 HPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          HPL + W+ + F+  K   W+E   ++ +FST+EDFW
Sbjct: 10 HPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFW 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	1e-11
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	1e-11
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	3e-11
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	7e-11
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	1e-10
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	2e-09
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	3e-08

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} PDB: 3hxg_A* Length = 189

 Score = 56.2 bits (135), Expect = 1e-11
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80
            HPL + W+ + F+  K   W+E   ++ +FST+EDFW 
Sbjct: 8  FPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWS 47

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} PDB: 3m93_A* Length = 189

 Score = 56.3 bits (135), Expect = 1e-11
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          ++HPL   W LWY + D++K WE+  +++  F TVEDFW
Sbjct: 1  MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFW 39

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A* Length = 190

 Score = 55.1 bits (132), Expect = 3e-11
 Identities = 26/42 (61%), Positives = 32/42 (76%)

Query: 38 ELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFW 79
          E  IKHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW
Sbjct: 5  EHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFW 46

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A* Length = 213

 Score = 54.4 bits (130), Expect = 7e-11
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 14 NKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQREITS 71
           K +E    ++TT T  T     +   +KHPL+ KWTLWY +   DK++ W +  R +TS
Sbjct: 8  KKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTS 67

Query: 72 FSTVEDFW 79
          F TVE+FW
Sbjct: 68 FQTVEEFW 75

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B* Length = 217

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 28/66 (42%), Positives = 34/66 (51%)

Query: 14 NKEKEQQPQENTTTTAVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFS 73
                 P      T         E  IKHPL N+W LW+F+NDK+K W+ N R I+ F 
Sbjct: 8  TTPTPNPPTTEEEKTESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFD 67

Query: 74 TVEDFW 79
          TVEDFW
Sbjct: 68 TVEDFW 73

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A* Length = 177

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 43 HPLHNKWTLWYF---ENDKNKGWEENQREITSFSTVEDFWW 80
          HPL N WT W+       +   W      I +FSTVEDFW 
Sbjct: 2  HPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWG 42

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A Length = 195

 Score = 47.4 bits (112), Expect = 3e-08
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 42 KHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWW 80
          +HPL   +T WY          ++ +E+N ++I +F++VE FW 
Sbjct: 14 EHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWR 57

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
1ipb_A	217	Eukaryotic translation initiation factor 4E; prote	99.57
4axg_A	248	Eukaryotic translation initiation factor 4E; 4E-BP	99.53
1l8b_A	190	Eukaryotic translation initiation factor 4E; eukar	99.51
3m94_A	189	Translation initiation factor 4E; EIF4E, berkeley	99.51
3hxi_A	189	Eukaryotic translation initiation 4E; protein-mRNA	99.5
1ap8_A	213	Translation initiation factor EIF4E; RNA CAP; HET:	99.45
2idr_A	177	Eukaryotic translation initiation factor 4E-1; euk	99.4
2jgb_A	195	Eukaryotic translation initiation factor 4E type 2	99.39

>1ipb_A Eukaryotic translation initiation factor 4E; protein biosynthesis, RNA binding protein; HET: GTA; 2.00A {Homo sapiens} SCOP: d.86.1.1 PDB: 1ipc_A* 2gpq_A 2v8w_A* 2v8x_A* 2v8y_A* 2w97_A* 3smu_A 3tf2_A 3u7x_A 4dt6_A* 4dum_A* 2w97_B*

Probab=99.57  E-value=5.3e-16  Score=112.12  Aligned_cols=52  Identities=50%  Similarity=1.015  Sum_probs=43.8

Q ss_pred             ccCCCccccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          29 AVTTPEVESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        29 ~~~~~~~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ...++.+.|+...+|||++.|||||+.+++.++|+++|++|++|+|||+||+
T Consensus        23 ~~~~~~~~~e~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~I~tf~TVE~FW~   74 (217)
T 1ipb_A           23 ESNQEVANPEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA   74 (217)
T ss_dssp             ----CCCCGGGTSCCEEEEEEEEEEECCCTTSCTGGGEEEEEEEEEHHHHHH
T ss_pred             cccccccCcccccCCCCCCeEEEEEEeCCcccchhhhceEEEEEccHHHHHH
Confidence            4445555667778899999999999999889999999999999999999995

>4axg_A Eukaryotic translation initiation factor 4E; 4E-BP, mRNA localization, translation; 2.80A {Drosophila melanogaster}

Probab=99.53  E-value=1.2e-15  Score=112.17  Aligned_cols=46  Identities=65%  Similarity=1.215  Sum_probs=39.9

Q ss_pred             cccccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          35 VESELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        35 ~~~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      +.+....+|||++.|||||+.++++.+|.++|++|++|+|||+||+
T Consensus        62 ~~~~~~~kHpL~~~WtlW~~~~~~~~~~~~~l~~I~~f~TVE~FW~  107 (248)
T 4axg_A           62 VRTEHLYKHPLMNVWTLWYLENDRSKSWEDMQNEITSFDTVEDFWS  107 (248)
T ss_dssp             ----CCCCCEEEEEEEEEEESCSCCCTTBCCEEEEEEEEEHHHHHH
T ss_pred             cCcccccCCCCCCeEEEEEeeCCCccchHHhCeEEEEEcCHHHHHH
Confidence            3456677899999999999999999999999999999999999995

>1l8b_A Eukaryotic translation initiation factor 4E; eukaryotic initiation factor 4E, EIF4E, CAP, 7-METHYLGPPPG, RNA binding protein; HET: MGP; 1.80A {Mus musculus} SCOP: d.86.1.1 PDB: 1ej4_A* 1ejh_A* 1ej1_A* 1wkw_A* 3am7_A*

Probab=99.51  E-value=2.4e-15  Score=106.40  Aligned_cols=44  Identities=59%  Similarity=1.213  Sum_probs=37.7

Q ss_pred             cccccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          37 SELMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        37 ~~~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      |+....|||++.|||||+.++++++|+++|++|++|+|||+||+
T Consensus         4 ~~~~~~hpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~   47 (190)
T 1l8b_A            4 PEHYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA   47 (190)
T ss_dssp             -----CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHH
T ss_pred             ccccccCCCCCeEEEEEEcCCCccchhhhceEEEEEecHHHHHH
Confidence            35567899999999999999889999999999999999999995

>3m94_A Translation initiation factor 4E; EIF4E, berkeley structural genomics center, BSGC; HET: M7M; 2.05A {Ascaris suum} SCOP: d.86.1.0 PDB: 3m93_A*

Probab=99.51  E-value=3.1e-15  Score=106.32  Aligned_cols=40  Identities=45%  Similarity=1.181  Sum_probs=38.0

Q ss_pred             cCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          41 IKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        41 ~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ++||||++|||||++.++..+|+++|++|++|+|||+||+
T Consensus         1 ~~HpL~~~Wt~W~~~~~~~~~y~~~l~~i~tf~TVE~FW~   40 (189)
T 3m94_A            1 MRHPLQCHWALWYLKADRSKDWEDCLKQVAVFDTVEDFWS   40 (189)
T ss_dssp             CCCEEEEEEEEEEECCCSSSCGGGGEEEEEEEEEHHHHHH
T ss_pred             CCCCCCCcEEEEEECCCCccChhhhceEEEEEecHHHHHH
Confidence            4799999999999999889999999999999999999995

>3hxi_A Eukaryotic translation initiation 4E; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Schistosoma mansoni} SCOP: d.86.1.0 PDB: 3hxg_A*

Probab=99.50  E-value=4e-15  Score=105.65  Aligned_cols=42  Identities=36%  Similarity=0.858  Sum_probs=38.6

Q ss_pred             cccCCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          39 LMIKHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        39 ~~~~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ...+||||++|||||++++++++|+++|++|++|+|||+||+
T Consensus         6 ~~~~HpL~~~Wt~W~~~~~~~~~~~~~l~~i~~f~TVE~FW~   47 (189)
T 3hxi_A            6 PEFPHPLQDSWSYYLFQFRKALDWDECLEKVATFSTIEDFWS   47 (189)
T ss_dssp             -CCCCEEEEEEEEEEECCCTTCCGGGGEEEEEEEEEHHHHHH
T ss_pred             CCccCCCCCeEEEEEECCCCccChhhhceEEEEEeeHHHHHH
Confidence            345799999999999999888999999999999999999995

>1ap8_A Translation initiation factor EIF4E; RNA CAP; HET: M7G; NMR {Saccharomyces cerevisiae} SCOP: d.86.1.1 PDB: 1rf8_A*

Probab=99.45  E-value=4.5e-14  Score=101.90  Aligned_cols=44  Identities=45%  Similarity=1.000  Sum_probs=39.1

Q ss_pred             cccccCCCCccccEEeEEcCCc--cccHhhccceeeeecchhhccC
Q psy8925          37 SELMIKHPLHNKWTLWYFENDK--NKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        37 ~~~~~~HPLq~~WtfWy~~~~k--~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ......|||++.|||||+.+++  ..+|+++|++|++|+|||+||+
T Consensus        31 ~~~~~~hpL~~~Wt~W~~~~~~~~~~~y~~~l~~I~tf~TVE~FW~   76 (213)
T 1ap8_A           31 AHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWA   76 (213)
T ss_dssp             CCCCCSSEEEEEEEEEEECCCGGGTSCHHHHCEEEEEEEESHHHHH
T ss_pred             CCCCCccccCCcEEEEEEcCCcccccchhhhceEEEEEccHHHHHH
Confidence            3445789999999999999864  6789999999999999999995

>2idr_A Eukaryotic translation initiation factor 4E-1; eukaryotic initiation factor 4E, EIF4E, translation regulator; 1.85A {Triticum aestivum} PDB: 2idv_A* 2wmc_A*

Probab=99.40  E-value=3.1e-14  Score=99.75  Aligned_cols=39  Identities=44%  Similarity=0.988  Sum_probs=35.5

Q ss_pred             CCCCccccEEeEEcCC---ccccHhhccceeeeecchhhccC
Q psy8925          42 KHPLHNKWTLWYFEND---KNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        42 ~HPLq~~WtfWy~~~~---k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      +|||+++|||||+++.   +..+|+++|++|++|+|||+||+
T Consensus         1 ~HpL~~~Wt~W~~~~~~~~~~~~y~~~l~~i~~f~TVE~FW~   42 (177)
T 2idr_A            1 AHPLENAWTFWFDNPQGKSRQVAWGSTIHPIHTFSTVEDFWG   42 (177)
T ss_dssp             CCEEEEEEEEEEECTTCSSCEEETTEEECCEEEEEEHHHHHH
T ss_pred             CCCCCCeEEEEEEcCCCCCcccchHhhCeEEEEEcCHHHHHH
Confidence            5999999999999863   46789999999999999999995

>2jgb_A Eukaryotic translation initiation factor 4E type 2; phosphorylation, 4EHP, EIF4E, RNA- binding, acetylation, CAP-binding; HET: MGT; 1.7A {Homo sapiens} PDB: 2jgc_A

Probab=99.39  E-value=4.5e-14  Score=100.35  Aligned_cols=42  Identities=33%  Similarity=0.797  Sum_probs=36.8

Q ss_pred             cccCCCCccccEEeEEcCC-----ccccHhhccceeeeecchhhccC
Q psy8925          39 LMIKHPLHNKWTLWYFEND-----KNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        39 ~~~~HPLq~~WtfWy~~~~-----k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ....|||++.|||||+.+.     +.++|+++|++|++|+|||+||+
T Consensus        11 ~~~~hpL~~~Wt~W~~~~~~~~~~~~~~y~~~l~~i~tf~TVE~FW~   57 (195)
T 2jgb_A           11 GPAEHPLQYNYTFWYSRRTPGRPTSSQSYEQNIKQIGTFASVEQFWR   57 (195)
T ss_dssp             CTTCCEEEEEEEEEEEEECTTCCCCHHHHHHHEEEEEEEEEHHHHHH
T ss_pred             CCCcCccCCeEEEEEEcCCCCCccchhhhhhhceEEEEEecHHHHHH
Confidence            3567999999999999752     45689999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1ap8a_	213	d.86.1.1 (A:) Translation initiation factor eIF4e	4e-13
d1l8ba_	182	d.86.1.1 (A:) Translation initiation factor eIF4e	1e-12

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (143), Expect = 4e-13
 Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 12 SLNKEKEQQPQ-ENTTTTAVTTPEVESELMIKHPLHNKWTLWYFEN--DKNKGWEENQRE 68
           ++K+ E+    ++TT T  T     +   +KHPL+ KWTLWY +   DK++ W +  R 
Sbjct: 5  EVSKKFEENVSVDDTTATPKTVLSDSAHFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRP 64

Query: 69 ITSFSTVEDFWW 80
          +TSF TVE+FW 
Sbjct: 65 VTSFQTVEEFWA 76

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]} Length = 182

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (139), Expect = 1e-12
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query: 42 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW 80
          KHPL N+W LW+F+NDK+K W+ N R I+ F TVEDFW 
Sbjct: 1  KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1ap8a_	213	Translation initiation factor eIF4e {Baker's yeast	99.38
d1l8ba_	182	Translation initiation factor eIF4e {Mouse (Mus mu	99.36

>d1ap8a_ d.86.1.1 (A:) Translation initiation factor eIF4e {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.38  E-value=8.8e-14  Score=98.34  Aligned_cols=43  Identities=49%  Similarity=1.052  Sum_probs=37.5

Q ss_pred             ccccCCCCccccEEeEEcCC--ccccHhhccceeeeecchhhccC
Q psy8925          38 ELMIKHPLHNKWTLWYFEND--KNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        38 ~~~~~HPLq~~WtfWy~~~~--k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      ....+|||++.|||||+.+.  +..+|.++|++|++|+|||+||+
T Consensus        32 ~~~~kHpL~~~Wt~wy~~~~~~~~~~y~~~l~~I~~f~TvE~Fw~   76 (213)
T d1ap8a_          32 HFDVKHPLNTKWTLWYTKPAVDKSESWSDLLRPVTSFQTVEEFWA   76 (213)
T ss_dssp             CCCCSSEEEEEEEEEEECCCGGGTSCHHHHCEEEEEEEESHHHHH
T ss_pred             cCCcCCcCCCcEEEEEEcCCCCcccchhhhceEEEEEccHHHHHH
Confidence            34457999999999999864  45789999999999999999994

>d1l8ba_ d.86.1.1 (A:) Translation initiation factor eIF4e {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: eIF4e-like
superfamily: eIF4e-like
family: Translation initiation factor eIF4e
domain: Translation initiation factor eIF4e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=5.6e-14  Score=96.53  Aligned_cols=39  Identities=62%  Similarity=1.318  Sum_probs=37.5

Q ss_pred             CCCCccccEEeEEcCCccccHhhccceeeeecchhhccC
Q psy8925          42 KHPLHNKWTLWYFENDKNKGWEENQREITSFSTVEDFWW   80 (80)
Q Consensus        42 ~HPLq~~WtfWy~~~~k~~~y~~~Lk~I~tF~TVE~FW~   80 (80)
                      +|||++.|||||+..+.+.+|.+++++|++|+|||+||+
T Consensus         1 kHpL~~~Wt~w~~~~~~~~~~~~~~~~i~~f~tvE~Fw~   39 (182)
T d1l8ba_           1 KHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWA   39 (182)
T ss_dssp             CCEEEEEEEEEEEECCSSSCTGGGEEEEEEEEEHHHHHH
T ss_pred             CCCCCCeEEEEEEeCCCCchhhhcceEEEEEcCHHHHHH
Confidence            699999999999999999999999999999999999995