Psyllid ID: psy8926

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFSTIRPSLTF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHcEEEEcccEEEEEEEcccccccccccEEEEEcccccEEEEEEEEEEEEEccccccccccccEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcEEEEccccEEEEEEcccccccccccccEEEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEEEEEEcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MADSLLVGIVSLFSLLLVFNysfhkieeghvgvyfrggallstisgpgfhamipFITTFRHVQVTLqtdevknvpcgtsggvmiyFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVrvtkpkipeTIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEgkyslfdfstirpsltf
Flexible Loop (DISEMBL)
MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMapglfiqavrvtkpkipETIRKNYELMEAEKTKLLisiqhqkvvekdaetERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRvakiegkyslfdfstirpsltf
Low Complexity Region (SEG)
MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFSTIRPSLTF
Disordered region (IsUnstruct)
****LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKV********************************************GKYSLFDF*********
Disordered Region (DISOPRED)
**DSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET*****************************************************************KIEGKYSLFDFSTIRPSLT*
Disordered Region (DISEMBL)
MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQK*********VAKIEGKYSLFDFSTIRPSLTF
Disordered Region (DISPRO)
*ADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFSTIRPSLTF
Transmembrane Helix (TMHMM)
ooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFSTIRPSLTF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q6DKC0	330	Erlin-2-B OS=Xenopus laev	N/A	N/A	0.855	0.681	0.782	1e-106
Q91X78	346	Erlin-1 OS=Mus musculus G	yes	N/A	0.912	0.693	0.743	1e-106
Q28J34	335	Erlin-2 OS=Xenopus tropic	yes	N/A	0.855	0.671	0.777	1e-106
Q5XH03	335	Erlin-2-A OS=Xenopus laev	N/A	N/A	0.855	0.671	0.777	1e-104
Q5R7C5	339	Erlin-2 OS=Pongo abelii G	yes	N/A	0.912	0.707	0.730	1e-104
O94905	339	Erlin-2 OS=Homo sapiens G	yes	N/A	0.912	0.707	0.730	1e-104
Q8BFZ9	340	Erlin-2 OS=Mus musculus G	no	N/A	0.912	0.705	0.730	1e-104
B5DEH2	339	Erlin-2 OS=Rattus norvegi	no	N/A	0.912	0.707	0.730	1e-104
Q58EG2	342	Erlin-1 OS=Danio rerio GN	yes	N/A	0.916	0.704	0.707	1e-104
O75477	346	Erlin-1 OS=Homo sapiens G	no	N/A	0.855	0.650	0.773	1e-104

>sp|Q6DKC0|ERL2B_XENLA Erlin-2-B OS=Xenopus laevis GN=erlin2-b PE=2 SV=1

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/225 (78%), Positives = 207/225 (92%)

Query: 22  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
           + HKIEEGHVGVY+RGGALL+T SGPGFH M+PFIT+F+ VQ TLQTDEVKNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLTTTSGPGFHLMLPFITSFKSVQSTLQTDEVKNVPCGTSGG 81

Query: 82  VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
           VMIYFDRIEVVN L  S+VYDIVKNYTADYDKALIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLISSAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
           DQIDE+LK ALQ++LN MAPG+ IQAVRVTKP IPE IR+NYELME+EKTKLLI+ Q QK
Sbjct: 142 DQIDEDLKLALQKDLNLMAPGIIIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQK 201

Query: 202 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
           VVEK+AETERK+A+IEAEK AQ+A+I+Y QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAQIKYGQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).
Xenopus laevis (taxid: 8355)

>sp|Q91X78|ERLN1_MOUSE Erlin-1 OS=Mus musculus GN=Erlin1 PE=1 SV=1

 Score =  383 bits (984), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 214/242 (88%), Gaps = 2/242 (0%)

Query: 5   LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
           L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct: 7   LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query: 65  TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
           TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct: 65  TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query: 125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
           NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct: 125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query: 185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
           LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct: 185 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query: 245 IE 246
           IE
Sbjct: 245 IE 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Mus musculus (taxid: 10090)

>sp|Q28J34|ERLN2_XENTR Erlin-2 OS=Xenopus tropicalis GN=erlin2 PE=2 SV=1

 Score =  383 bits (983), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 206/225 (91%)

Query: 22  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
           + HKIEEGHVGVY+RGGALL++ SGPGFH M+PFIT+F+ VQ T+QTDEVKNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITSFKSVQSTMQTDEVKNVPCGTSGG 81

Query: 82  VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
           VMIYFDRIEVVN L  S+VYDIVKNYTADYDK LIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLIPSAVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
           DQIDENLK ALQ++LN MAPGL IQAVRVTKP IPE IR+NYELME+EKTKLLI+ Q QK
Sbjct: 142 DQIDENLKLALQKDLNSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQK 201

Query: 202 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
           VVEK+AETERK+A+IEAEK AQ+A+I+Y QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAEIKYGQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Xenopus tropicalis (taxid: 8364)

>sp|Q5XH03|ERL2A_XENLA Erlin-2-A OS=Xenopus laevis GN=erlin2-a PE=2 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/225 (77%), Positives = 205/225 (91%)

Query: 22  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
           + HKIEEGHVGVY+RGGALLST SGPGFH M PFIT+F+ VQ TLQTDE+KNVPCGTSGG
Sbjct: 22  AIHKIEEGHVGVYYRGGALLSTTSGPGFHLMFPFITSFKSVQSTLQTDEIKNVPCGTSGG 81

Query: 82  VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
           VMIYFDRIEVVN L  S+VYDIVKN+TADYDKALIFNK+HHELNQFCS+HNL EVYI+LF
Sbjct: 82  VMIYFDRIEVVNYLISSAVYDIVKNFTADYDKALIFNKIHHELNQFCSVHNLQEVYIELF 141

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
           DQIDENLK ALQ +LN MAPG+ IQAVRVTKPKIPE I +N+ELME EKTKLLI+ Q QK
Sbjct: 142 DQIDENLKLALQEDLNLMAPGIIIQAVRVTKPKIPEAIGRNFELMEGEKTKLLIAAQKQK 201

Query: 202 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
           VVEK+AETERK+A+IEAEK AQ+A+I+Y+QKVME+E+++++++IE
Sbjct: 202 VVEKEAETERKKAIIEAEKVAQVAQIKYKQKVMEKETEKKISEIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Xenopus laevis (taxid: 8355)

>sp|Q5R7C5|ERLN2_PONAB Erlin-2 OS=Pongo abelii GN=ERLIN2 PE=2 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 6   LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 246 E 246
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Pongo abelii (taxid: 9601)

>sp|O94905|ERLN2_HUMAN Erlin-2 OS=Homo sapiens GN=ERLIN2 PE=1 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 6   LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 246 E 246
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Homo sapiens (taxid: 9606)

>sp|Q8BFZ9|ERLN2_MOUSE Erlin-2 OS=Mus musculus GN=Erlin2 PE=1 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 212/241 (87%), Gaps = 1/241 (0%)

Query: 6   LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 246 E 246
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Mus musculus (taxid: 10090)

>sp|B5DEH2|ERLN2_RAT Erlin-2 OS=Rattus norvegicus GN=Erlin2 PE=1 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/241 (73%), Positives = 211/241 (87%), Gaps = 1/241 (0%)

Query: 6   LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
           +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct: 7   VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
           LQTDEVKNVPCGTSGGVMIYFDRIEVVN L   +VYDIVKNYTADYDKALIFNK+HHELN
Sbjct: 66  LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPHAVYDIVKNYTADYDKALIFNKIHHELN 125

Query: 126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
           QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct: 126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query: 186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
           ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct: 186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query: 246 E 246
           E
Sbjct: 246 E 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs). Also involved in ITPR1 degradation by the ERAD pathway.

Rattus norvegicus (taxid: 10116)

>sp|Q58EG2|ERLN1_DANRE Erlin-1 OS=Danio rerio GN=erlin1 PE=2 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 172/243 (70%), Positives = 217/243 (89%), Gaps = 2/243 (0%)

Query: 4   SLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQ 63
           +++  +  L ++LL  + S HKIEEGH+ VY+RGGALL++ +GPG+H M+PFIT++R VQ
Sbjct: 6   AVVAAMAGLMAILL--HSSIHKIEEGHLAVYYRGGALLTSPNGPGYHIMLPFITSYRSVQ 63

Query: 64  VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHE 123
            TLQTDE+KNVPCGTSGGVMIYFDRIEVVN+L  +SV DIV+NYTADYDK LIFNK+HHE
Sbjct: 64  TTLQTDEIKNVPCGTSGGVMIYFDRIEVVNMLIPTSVVDIVRNYTADYDKTLIFNKIHHE 123

Query: 124 LNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY 183
           LNQFCS+H L EVYI+LFD IDENLKTALQ++LN MAPGL IQAVRVTKPKIPE IR+NY
Sbjct: 124 LNQFCSVHTLQEVYIELFDIIDENLKTALQKDLNCMAPGLTIQAVRVTKPKIPEAIRRNY 183

Query: 184 ELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVA 243
           ELMEAEKT+LLI++Q QKVVEK+AETERK+A+IEA+K AQ+A+IQ++QKVME+E++++++
Sbjct: 184 ELMEAEKTRLLITVQTQKVVEKEAETERKKAIIEAQKVAQVAEIQFQQKVMEKETEKKIS 243

Query: 244 KIE 246
           +IE
Sbjct: 244 EIE 246

Mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Danio rerio (taxid: 7955)

>sp|O75477|ERLN1_HUMAN Erlin-1 OS=Homo sapiens GN=ERLIN1 PE=1 SV=1

 Score =  376 bits (966), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/225 (77%), Positives = 205/225 (91%)

Query: 22  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
           S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ TLQTDEVKNVPCGTSGG
Sbjct: 22  SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGTSGG 81

Query: 82  VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
           VMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHELNQFCS H L EVYI+LF
Sbjct: 82  VMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHELNQFCSAHTLQEVYIELF 141

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
           DQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+ELMEAEKTKLLI+ Q QK
Sbjct: 142 DQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAQKQK 201

Query: 202 VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
           VVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++IE
Sbjct: 202 VVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISEIE 246

Component of the ERLIN1/ERLIN2 complex which mediates the endoplasmic reticulum-associated degradation (ERAD) of inositol 1,4,5-trisphosphate receptors (IP3Rs).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
332018226	327	Erlin-1 [Acromyrmex echinatior]	0.954	0.767	0.776	1e-115
340722918	314	PREDICTED: erlin-1-like [Bombus terrestr	0.954	0.799	0.776	1e-115
383850192	328	PREDICTED: erlin-1-like [Megachile rotun	0.954	0.765	0.776	1e-114
307198436	326	Erlin-1 [Harpegnathos saltator]	0.954	0.769	0.776	1e-114
380022736	324	PREDICTED: erlin-1-like [Apis florea]	0.954	0.774	0.768	1e-114
110761744	324	PREDICTED: erlin-1-like [Apis mellifera]	0.954	0.774	0.768	1e-114
307172340	326	Erlin-1 [Camponotus floridanus]	0.954	0.769	0.776	1e-114
350403683	814	PREDICTED: hypothetical protein LOC10074	0.893	0.288	0.808	1e-113
91088039	327	PREDICTED: similar to SPFH domain family	0.950	0.764	0.780	1e-113
427784217	365	Putative prohibitin-related membrane pro	0.935	0.673	0.768	1e-112

>gi|332018226|gb|EGI58831.1| Erlin-1 [Acromyrmex echinatior]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 224/251 (89%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++ I  L   ++VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIPF+TT+R
Sbjct: 1   MFDQRIIAICFLVCFVIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPFLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGV+IYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVIIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQR+LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQRDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+A+IEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAIIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           ++A IE +  L
Sbjct: 241 QMAAIEDEMHL 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722918|ref|XP_003399846.1| PREDICTED: erlin-1-like [Bombus terrestris]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 223/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  SSVY++V+N+TADYD+ LIFNK+
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDASSVYNMVRNFTADYDQTLIFNKI 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES+Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYIQKIMEKESQQ 240

Query: 241 RVAKIEGKYSL 251
           R+A IE +  L
Sbjct: 241 RIAAIEDEMHL 251

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383850192|ref|XP_003700681.1| PREDICTED: erlin-1-like [Megachile rotundata]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 222/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFFICLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYSQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           R+A IE +  L
Sbjct: 241 RMASIEDEMHL 251

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307198436|gb|EFN79378.1| Erlin-1 [Harpegnathos saltator]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 222/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M +  ++ I  L    +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFNQRIIAICFLVCFAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           ++A IE K  L
Sbjct: 241 QMAAIEDKMHL 251

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022736|ref|XP_003695194.1| PREDICTED: erlin-1-like [Apis florea]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/251 (76%), Positives = 223/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPET+R
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETLR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLISIQHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQ+ QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQFNQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           R+A IE +  L
Sbjct: 241 RIAAIEDEMHL 251

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761744|ref|XP_623822.2| PREDICTED: erlin-1-like [Apis mellifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/251 (76%), Positives = 223/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++GI     L +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQSIIGICFCVCLAIVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNK+
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDQTLIFNKI 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPET+R
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETLR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLISIQHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQ+ QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQFNQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           R+A IE +  L
Sbjct: 241 RIATIEDEMHL 251

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172340|gb|EFN63828.1| Erlin-1 [Camponotus floridanus]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/251 (77%), Positives = 222/251 (88%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M D  ++ +  L    +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R
Sbjct: 1   MFDQRIIAVGFLVCFAIVFNFSLHRIEEGHVGVYFRGGALLPQVSHPGFHMMIPLLTTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+L  +SVY++V+N+TADYD+ LIFNKV
Sbjct: 61  AVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILDANSVYNMVRNFTADYDRTLIFNKV 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+H LHEVYIDLFDQIDENLKTALQR+LNE+APGL IQAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHTLHEVYIDLFDQIDENLKTALQRDLNELAPGLNIQAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELMEAEKTKLLIS QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES Q
Sbjct: 181 KNYELMEAEKTKLLISTQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYNQKIMEKESLQ 240

Query: 241 RVAKIEGKYSL 251
           ++A IE +  L
Sbjct: 241 QMAAIEDEMHL 251

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403683|ref|XP_003486875.1| PREDICTED: hypothetical protein LOC100747756 [Bombus impatiens]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/235 (80%), Positives = 216/235 (91%)

Query: 17  LVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPC 76
           +VFN+S H+IEEGHVGVYFRGGALL  +S PGFH MIP +TT+R VQVTLQTDEVKNVPC
Sbjct: 517 VVFNFSLHRIEEGHVGVYFRGGALLPQVSNPGFHMMIPLLTTYRSVQVTLQTDEVKNVPC 576

Query: 77  GTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEV 136
           GTSGGVMIYFDRIEVVN+L  SSVY++V+N+TADYD+ LIFNK+HHELNQFCS+H LHEV
Sbjct: 577 GTSGGVMIYFDRIEVVNILDASSVYNMVRNFTADYDQTLIFNKIHHELNQFCSVHTLHEV 636

Query: 137 YIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLIS 196
           YIDLFDQIDENLKTALQ++LN++APGL I AVRVTKPKIPETIRKNYELMEAEKTKLLIS
Sbjct: 637 YIDLFDQIDENLKTALQKDLNDLAPGLSIHAVRVTKPKIPETIRKNYELMEAEKTKLLIS 696

Query: 197 IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSL 251
            QHQKVVEKDAET+RK+AVIEAEKEAQ+AKIQY QK+ME+ES+QR+A IE +  L
Sbjct: 697 TQHQKVVEKDAETDRKKAVIEAEKEAQVAKIQYIQKIMEKESQQRIAAIEDEMHL 751

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088039|ref|XP_974446.1| PREDICTED: similar to SPFH domain family, member 1 [Tribolium castaneum] gi|270012079|gb|EFA08527.1| hypothetical protein TcasGA2_TC006180 [Tribolium castaneum]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/251 (78%), Positives = 221/251 (88%), Gaps = 1/251 (0%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           + + L++G V L +L ++FNYS H+IEEGHVGVYFRGGALL   S PG+H MIP +T ++
Sbjct: 4   LTEHLIIGTV-LSTLFIIFNYSLHRIEEGHVGVYFRGGALLPVTSSPGYHMMIPLLTIYK 62

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN L+ +SV DIV+NYTADYDK LIFNK+
Sbjct: 63  SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNHLNANSVMDIVRNYTADYDKTLIFNKI 122

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCSIH LHEVYIDLFDQIDENLK ALQR+L EMAPGL IQAVRVTKPKIPE IR
Sbjct: 123 HHELNQFCSIHTLHEVYIDLFDQIDENLKQALQRDLLEMAPGLTIQAVRVTKPKIPEVIR 182

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           KNYELME EKTKLLI+ QHQKVVEKDAETERKRAVIEAEKEAQ+AKIQY+QK+ME+ES Q
Sbjct: 183 KNYELMEGEKTKLLIATQHQKVVEKDAETERKRAVIEAEKEAQVAKIQYQQKIMEKESLQ 242

Query: 241 RVAKIEGKYSL 251
           R+A+IE +  L
Sbjct: 243 RIAQIEDEMHL 253

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427784217|gb|JAA57560.1| Putative prohibitin-related membrane protease subunit [Rhipicephalus pulchellus]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/246 (76%), Positives = 219/246 (89%)

Query: 1   MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
           M +S +  +   F+L L+ N+S HKI+EGHVGVY+RGGALL   S PGFH MIPFITT+R
Sbjct: 1   MPNSGVAALTCAFALFLIVNFSLHKIDEGHVGVYYRGGALLKQTSNPGFHMMIPFITTYR 60

Query: 61  HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
            +QVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN+LS  SVYD+VKNYTADYDK LIFNKV
Sbjct: 61  SIQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNILSPDSVYDMVKNYTADYDKTLIFNKV 120

Query: 121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
           HHELNQFCS+HNL EVYI+LFDQIDENLKTALQR+LN MAPGLF+QAVRVTKPKIPETIR
Sbjct: 121 HHELNQFCSVHNLQEVYINLFDQIDENLKTALQRDLNVMAPGLFVQAVRVTKPKIPETIR 180

Query: 181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
           +NYE+MEAEKTKLLI+ Q QKVVEKDAET+RK+A+I+AEK AQ+AKIQY QK++EQES +
Sbjct: 181 RNYEMMEAEKTKLLIAEQRQKVVEKDAETDRKKAIIDAEKVAQVAKIQYTQKILEQESLK 240

Query: 241 RVAKIE 246
           +++ IE
Sbjct: 241 KMSHIE 246

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
UNIPROTKB|G3N0U8	348	ERLIN1 "Uncharacterized protei	0.912	0.689	0.747	1.8e-94
UNIPROTKB|F1NBD0	344	ERLIN2 "Uncharacterized protei	0.935	0.715	0.731	3e-94
MGI|MGI:2387613	346	Erlin1 "ER lipid raft associat	0.912	0.693	0.743	3e-94
RGD|1307058	348	Erlin1 "ER lipid raft associat	0.912	0.689	0.743	3e-94
UNIPROTKB|B8XSJ1	348	ERLIN1 "ER lipid raft-associat	0.912	0.689	0.743	3.8e-94
UNIPROTKB|O75477	346	ERLIN1 "Erlin-1" [Homo sapiens	0.912	0.693	0.739	1.3e-93
UNIPROTKB|Q5RCJ9	346	ERLIN1 "Erlin-1" [Pongo abelii	0.912	0.693	0.739	1.3e-93
UNIPROTKB|E5RHW4	338	ERLIN2 "Erlin-2" [Homo sapiens	0.912	0.710	0.730	2.1e-93
UNIPROTKB|O94905	339	ERLIN2 "Erlin-2" [Homo sapiens	0.912	0.707	0.730	2.1e-93
UNIPROTKB|Q5R7C5	339	ERLIN2 "Erlin-2" [Pongo abelii	0.912	0.707	0.730	2.1e-93

UNIPROTKB|G3N0U8 ERLIN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 181/242 (74%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+ G+V L  +LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAGVVGLVVVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIVKNYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPCAVFDIVKNYTADYDKTLIFNKIHHEL 126

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNVMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   245 IE 246
             IE
Sbjct:   247 IE 248

GO:0043234 "protein complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|F1NBD0 ERLIN2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/246 (73%), Positives = 212/246 (86%)

Query:     1 MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFR 60
             MA    +  + L  L   F  + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++
Sbjct:     3 MAQLGAIAALVLSFLAAAFLSAIHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYK 62

Query:    61 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKV 120
              VQ TLQTDEVKNVPCGTSGGVMIYFDRIEVVN L  S+VYDIVKNYTADYDKALIFNK+
Sbjct:    63 SVQTTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIQSAVYDIVKNYTADYDKALIFNKI 122

Query:   121 HHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR 180
             HHELNQFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPETIR
Sbjct:   123 HHELNQFCSVHTLQEVYIELFDQIDENLKLALQQDLTTMAPGLIIQAVRVTKPNIPETIR 182

Query:   181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ 240
             +NYELME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++
Sbjct:   183 RNYELMESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKIAQVAEITYGQKVMEKETEK 242

Query:   241 RVAKIE 246
             R+++IE
Sbjct:   243 RISEIE 248

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

MGI|MGI:2387613 Erlin1 "ER lipid raft associated 1" [Mus musculus (taxid:10090)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   245 IE 246
             IE
Sbjct:   245 IE 246

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

RGD|1307058 Erlin1 "ER lipid raft associated 1" [Rattus norvegicus (taxid:10116)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAAVVGLVAILLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 126

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNTMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERKRAVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKRAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   245 IE 246
             IE
Sbjct:   247 IE 248

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IEA;ISO

UNIPROTKB|B8XSJ1 ERLIN1 "ER lipid raft-associated 1" [Sus scrofa (taxid:9823)]

 Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
 Identities = 180/242 (74%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+ G+V L  +LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     9 LVAGVVGLVVVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 66

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    67 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPCAVFDIVRNYTADYDKTLIFNKIHHEL 126

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   127 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNVMAPGLTIQAVRVTKPKIPEAIRRNFE 186

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   187 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 246

Query:   245 IE 246
             IE
Sbjct:   247 IE 248

GO:0043234 "protein complex" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

UNIPROTKB|O75477 ERLIN1 "Erlin-1" [Homo sapiens (taxid:9606)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 179/242 (73%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   245 IE 246
             IE
Sbjct:   245 IE 246

GO:0016021 "integral to membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q5RCJ9 ERLIN1 "Erlin-1" [Pongo abelii (taxid:9601)]

 Score = 932 (333.1 bits), Expect = 1.3e-93, P = 1.3e-93
 Identities = 179/242 (73%), Positives = 214/242 (88%)

Query:     5 LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
             L+  +V L ++LL    S HKIEEGH+ VY+RGGALL++ SGPG+H M+PFITTFR VQ 
Sbjct:     7 LVAAVVGLVAVLLYA--SIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQT 64

Query:    65 TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             TLQTDEVKNVPCGTSGGVMIY DRIEVVN+L+  +V+DIV+NYTADYDK LIFNK+HHEL
Sbjct:    65 TLQTDEVKNVPCGTSGGVMIYIDRIEVVNMLAPYAVFDIVRNYTADYDKTLIFNKIHHEL 124

Query:   125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
             NQFCS H L EVYI+LFDQIDENLK ALQ++LN MAPGL IQAVRVTKPKIPE IR+N+E
Sbjct:   125 NQFCSAHTLQEVYIELFDQIDENLKQALQKDLNLMAPGLTIQAVRVTKPKIPEAIRRNFE 184

Query:   185 LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAK 244
             LMEAEKTKLLI+ Q QKVVEK+AETERK+AVIEAEK AQ+AKI+++QKVME+E+++R+++
Sbjct:   185 LMEAEKTKLLIAAQKQKVVEKEAETERKKAVIEAEKIAQVAKIRFQQKVMEKETEKRISE 244

Query:   245 IE 246
             IE
Sbjct:   245 IE 246

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

UNIPROTKB|E5RHW4 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:     6 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   246 E 246
             E
Sbjct:   246 E 246

GO:0005737 "cytoplasm" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|O94905 ERLIN2 "Erlin-2" [Homo sapiens (taxid:9606)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:     6 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   246 E 246
             E
Sbjct:   246 E 246

GO:0008219 "cell death" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5R7C5 ERLIN2 "Erlin-2" [Pongo abelii (taxid:9601)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 176/241 (73%), Positives = 212/241 (87%)

Query:     6 LVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT 65
             +V + S F    +F+ + HKIEEGH+GVY+RGGALL++ SGPGFH M+PFIT+++ VQ T
Sbjct:     7 VVAVASSFFCASLFS-AVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTT 65

Query:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELN 125
             LQTDEVKNVPCGTSGGVMIYFDRIEVVN L  ++VYDIVKNYTADYDKALIFNK+HHELN
Sbjct:    66 LQTDEVKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELN 125

Query:   126 QFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL 185
             QFCS+H L EVYI+LFDQIDENLK ALQ++L  MAPGL IQAVRVTKP IPE IR+NYEL
Sbjct:   126 QFCSVHTLQEVYIELFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYEL 185

Query:   186 MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
             ME+EKTKLLI+ Q QKVVEK+AETERK+A+IEAEK AQ+A+I Y QKVME+E+++++++I
Sbjct:   186 MESEKTKLLIAAQKQKVVEKEAETERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEI 245

Query:   246 E 246
             E
Sbjct:   246 E 246

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1RMU4	ERLN2_BOVIN	No assigned EC number	0.7261	0.9125	0.7100	no	N/A
Q6DKC0	ERL2B_XENLA	No assigned EC number	0.7822	0.8555	0.6818	N/A	N/A
Q28DX1	ERLN1_XENTR	No assigned EC number	0.7283	0.9201	0.7586	no	N/A
Q5XH03	ERL2A_XENLA	No assigned EC number	0.7777	0.8555	0.6716	N/A	N/A
Q5RCJ9	ERLN1_PONAB	No assigned EC number	0.7733	0.8555	0.6502	no	N/A
Q91X78	ERLN1_MOUSE	No assigned EC number	0.7438	0.9125	0.6936	yes	N/A
Q5R7C5	ERLN2_PONAB	No assigned EC number	0.7302	0.9125	0.7079	yes	N/A
O94905	ERLN2_HUMAN	No assigned EC number	0.7302	0.9125	0.7079	yes	N/A
A3QK16	ERLN2_DANRE	No assigned EC number	0.7231	0.8935	0.7099	no	N/A
B5DEH2	ERLN2_RAT	No assigned EC number	0.7302	0.9125	0.7079	no	N/A
Q28J34	ERLN2_XENTR	No assigned EC number	0.7777	0.8555	0.6716	yes	N/A
Q58EG2	ERLN1_DANRE	No assigned EC number	0.7078	0.9163	0.7046	yes	N/A
O75477	ERLN1_HUMAN	No assigned EC number	0.7733	0.8555	0.6502	no	N/A
Q8BFZ9	ERLN2_MOUSE	No assigned EC number	0.7302	0.9125	0.7058	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	263
cd03406	280	cd03406, Band_7_3, A subgroup of the band 7 domain	1e-152
smart00244	160	smart00244, PHB, prohibitin homologues	1e-26
pfam01145	177	pfam01145, Band_7, SPFH domain / Band 7 family	3e-17
COG0330	291	COG0330, HflC, Membrane protease subunits, stomati	4e-08
cd02106	121	cd02106, Band_7, The band 7 domain of flotillin (r	6e-08
cd03405	242	cd03405, Band_7_HflC, Band_7_HflC: The band 7 doma	4e-07
cd03403	215	cd03403, Band_7_stomatin_like, Band_7_stomatin_lik	3e-06
TIGR01932	317	TIGR01932, hflC, HflC protein	1e-05
PRK11029	334	PRK11029, PRK11029, FtsH protease regulator HflC;	0.001

>gnl|CDD|239500 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin (reggie) like proteins

 Score =  425 bits (1095), Expect = e-152
 Identities = 181/228 (79%), Positives = 206/228 (90%)

Query: 19  FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGT 78
            + + HKIEEGHVGVY+RGGALL++ SGPGFH M+PFITT++ VQVTLQTDEVKNVPCGT
Sbjct: 1   LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGT 60

Query: 79  SGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI 138
           SGGVMIYFDRIEVVN L   SVYDIVKNYTADYDK LIFNK+HHELNQFCS+H L EVYI
Sbjct: 61  SGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYI 120

Query: 139 DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQ 198
           DLFDQIDENLK ALQ++L  MAPGL IQAVRVTKPKIPE IR+NYELMEAEKTKLLI+IQ
Sbjct: 121 DLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQ 180

Query: 199 HQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE 246
            QKVVEK+AETERK+AVIEAEK AQ+AKI + QKVME+E+++R+++IE
Sbjct: 181 KQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIE 228

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 280

>gnl|CDD|214581 smart00244, PHB, prohibitin homologues

 Score =  101 bits (253), Expect = 1e-26
 Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 22  SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGG 81
           +   + EG  GV  R G +L  + GPG H +IPFI   + V +  QTD+V      T   
Sbjct: 2   AIKVVGEGERGVVERLGRVL-RVLGPGLHFLIPFIDDVKKVDLRAQTDDVPPQETITKDN 60

Query: 82  VMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
           V +  D   VV    +  +  + +   ADY  A+I       L        L E+  D  
Sbjct: 61  VKVSVDA--VVYYRVLDPLRAVYRVLDADY--AVIEQLAQTTLRSVIGKRTLDELLTDQR 116

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELME 187
           ++I EN++  L       A G+ ++ V +   ++PE I++  E  +
Sbjct: 117 EKISENIREELNEAAE--AWGIKVEDVEIKDIRLPEEIKEAMEAQQ 160

prohibitin homologues. Length = 160

>gnl|CDD|216327 pfam01145, Band_7, SPFH domain / Band 7 family

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 18/193 (9%)

Query: 24  HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN-VPCGTSGGV 82
             +  G VGV  R G + S + GPG H  +PFI T   V   LQT EV   +   T  GV
Sbjct: 1   TIVPPGEVGVVTRFGKV-SRVLGPGLHFKLPFIQTITVVDTRLQTLEVTVDITVLTKDGV 59

Query: 83  MIYFDRIEVVNVLSVSSVYDIVKNYT-ADYDKALIFNKVHHELNQFCSIHNLHEVYIDLF 141
            +    ++V     V     +V NYT  +  + L+   V   L +  + + L E+  +  
Sbjct: 60  PV---NVDVTVQYRVEDPAKLVANYTGEEDLQELLRPLVRSALREVIARYTLDELLSNR- 115

Query: 142 DQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQK 201
           ++I + +K ALQ EL +   GL I+ V++T    P  I +  E  +A           Q+
Sbjct: 116 EEIAQEVKEALQEELEKY--GLEIEDVQITDIDPPPEIAEAIEEKQA---------AEQE 164

Query: 202 VVEKDAETERKRA 214
             E + E     A
Sbjct: 165 AEEAEIERAEAEA 177

This family has been called SPFH, Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals. Length = 177

>gnl|CDD|223407 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

 Score = 52.8 bits (127), Expect = 4e-08
 Identities = 56/257 (21%), Positives = 95/257 (36%), Gaps = 27/257 (10%)

Query: 5   LLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQV 64
           L++ I+ L  L+++   S   ++EG  GV  R G    T+  PG H  IPF      V V
Sbjct: 3   LILIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVV 62

Query: 65  TLQTDEV-----KNVPCGTSGGVMIYFDRIEVVNVLSVSS--VYDIVKNYTA-DYDKALI 116
            +   E            T   V+        V+V +V    V D  K     +  +A +
Sbjct: 63  RVDLRERTLDVGPPQEVITKDNVI--------VSVDAVVQYRVTDPQKAVYNVENAEAAL 114

Query: 117 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP 176
              V   L        L E+  +   +I+  ++  L    +    G+ +  V +     P
Sbjct: 115 RQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPW--GIKVVDVEIKDIDPP 172

Query: 177 ETIRKNYEL-MEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI--AKIQYEQKV 233
           E ++   E  M AE+ K        +++E + E +      E E EA I  A+ + E +V
Sbjct: 173 EEVQAAMEKQMAAERDKR------AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEV 226

Query: 234 MEQESKQRVAKIEGKYS 250
           + +        I     
Sbjct: 227 IARAEADAAKIIAAALR 243

Length = 291

>gnl|CDD|239024 cd02106, Band_7, The band 7 domain of flotillin (reggie) like proteins

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 65  TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHEL 124
             QT +V      T   V +   R++ V    V      + N     D+  +       L
Sbjct: 5   RRQTLDVPPQEVLTKDNVPV---RVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSAL 61

Query: 125 NQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE 184
                   L E+  D  D+I   ++ ALQ +L++   G+ +  VR+     PE +++  E
Sbjct: 62  RSVIGKMTLDELLED-RDEIAAEVREALQEDLDKY--GIEVVDVRIKDIDPPEEVQEAME 118

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Flotillins have been implicated in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. Length = 121

>gnl|CDD|239499 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 33/219 (15%)

Query: 26  IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIY 85
           ++EG   V  R G ++  ++ PG H  +PFI   +     + T +       T     + 
Sbjct: 4   VDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLI 63

Query: 86  FD-----RIEVVNVLSVSSVYDIVKNYTA-----DYDKALIFNKVHHELNQFCSIHNLHE 135
            D     RI            D ++ Y A        +  +   V+  L        L E
Sbjct: 64  VDAYAKWRIT-----------DPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIE 112

Query: 136 VYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLL 194
           +      ++ E ++ A+  E  E+  G+ +  VR+ +  +PE + ++ Y  M AE+ +  
Sbjct: 113 LVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRIDLPEEVSESVYRRMRAERER-- 168

Query: 195 ISIQH-----QKVVEKDAETERKRAVI--EAEKEAQIAK 226
           I+ +      ++     A+ +R+R VI  EA +EAQ  +
Sbjct: 169 IAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIR 207

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection. Length = 242

>gnl|CDD|239497 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 57/242 (23%), Positives = 95/242 (39%), Gaps = 45/242 (18%)

Query: 26  IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVT-LQTDEVKNVPCGTSGGVMI 84
           + +   GV  R G    T+ GPG H +IPFI    +      Q  +V      T   V +
Sbjct: 1   VPQYERGVVERLGKYHRTL-GPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTV 59

Query: 85  YFDRI---EVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI--- 138
             D +    VV+   V +VY +      DY  A+       +L Q      L  V I   
Sbjct: 60  RVDAVLYYRVVDP--VKAVYGV-----EDYRYAIS------QLAQT----TLRSV-IGKM 101

Query: 139 ---DLF---DQIDENLKTALQRELNEMAP-GLFIQAVRVTKPKIPETIRKNYEL-MEAEK 190
              +L    ++I+  L   L        P G+ ++ V +    +P+ I++      EAE+
Sbjct: 102 ELDELLSEREEINAELVEILDE---ATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAER 158

Query: 191 TKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYS 250
            K        K++E + E +    + EA K+A I     + +  E E+ + +AK      
Sbjct: 159 EKR------AKIIEAEGERQAAILLAEAAKQAAINPAALQLR--ELETLEEIAKEAASTV 210

Query: 251 LF 252
           +F
Sbjct: 211 VF 212

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin localizes to the plasma membrane of podocyte foot processes and, is found in higher order oligomers. Podocin plays a role in regulating glomerular permeability. Mutations in the podicin gene give rise to autosomal recessive steroid resistant nephritic syndrome. This group also contains proteins similar to three Caenorhabditis elegans proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the unc-1 and unc-24 genes result in abnormal motion and altered patterns of sensitivity to volatile anesthetics. MEC-2 and UNC-24 proteins interact with MEC-4 which is part of the degenerin channel complex required for response to gentle body touch. Length = 215

>gnl|CDD|233644 TIGR01932, hflC, HflC protein

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 56/275 (20%), Positives = 97/275 (35%), Gaps = 42/275 (15%)

Query: 7   VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFR 60
           +GIV +  L++V    F  I+EG  G+  R G +L        +  PG H  IPFI   +
Sbjct: 4   IGIVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVK 63

Query: 61  HVQVTLQT--DEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFN 118
                +QT       +P  T     I  D      +      Y      T    + LI  
Sbjct: 64  IFDAKIQTMDGRPDRIP--TKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKR 121

Query: 119 KVHHELNQFCSIHNLHEVYIDLFDQID---------------------ENLKTALQRELN 157
           K+   L     +  L E+     DQ+D                        +  L RE++
Sbjct: 122 KIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREILAREIS 181

Query: 158 EMAP------GLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKVVEKDAETE 210
           ++A       G+ +  VR+ K    + + ++ Y  M +E+      I      + + + E
Sbjct: 182 QIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSERE----QIARMHRSQGEEKAE 237

Query: 211 RKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKI 245
                 E E    +++     ++++ E     AKI
Sbjct: 238 EILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKI 272

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described [Protein fate, Degradation of proteins, peptides, and glycopeptides, Regulatory functions, Protein interactions]. Length = 317

>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)

Query: 9  IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALL------STISGPGFHAMIPFITTFRHV 62
          I  +  +L+V   S   ++EG  G+  R G +L        +  PG H  IPFI T + +
Sbjct: 6  IAIIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKML 65

Query: 63 QVTLQT 68
             +QT
Sbjct: 66 DARIQT 71

Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
cd03406	280	Band_7_3 A subgroup of the band 7 domain of flotil	100.0
PRK11029	334	FtsH protease regulator HflC; Provisional	100.0
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	100.0
KOG2962|consensus	322		100.0
PRK10930	419	FtsH protease regulator HflK; Provisional	100.0
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	100.0
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	100.0
cd03401	196	Band_7_prohibitin Band_7_prohibitin. A subgroup of	100.0
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	100.0
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	100.0
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	100.0
cd03402	219	Band_7_2 A subgroup of the band 7 domain of flotil	100.0
COG0330	291	HflC Membrane protease subunits, stomatin/prohibit	100.0
KOG3090|consensus	290		99.98
smart00244	160	PHB prohibitin homologues. prohibitin homologues	99.97
KOG2621|consensus	288		99.97
PF01145	179	Band_7: SPFH domain / Band 7 family; InterPro: IPR	99.95
KOG2620|consensus	301		99.95
KOG3083|consensus	271		99.94
cd03408	207	Band_7_5 A subgroup of the band 7 domain of flotil	99.85
cd03400	124	Band_7_1 A subgroup of the band 7 domain of flotil	99.81
COG2268	548	Uncharacterized protein conserved in bacteria [Fun	99.78
cd03399	128	Band_7_flotillin Band_7_flotillin: a subgroup of t	99.72
KOG2668|consensus	428		99.64
cd02106	121	Band_7 The band 7 domain of flotillin (reggie) lik	99.53
PF13421	211	Band_7_1: SPFH domain-Band 7 family	99.33
COG4260	345	Membrane protease subunit, stomatin/prohibitin fam	98.81
PTZ00491	850	major vault protein; Provisional	98.35
PRK10930	419	FtsH protease regulator HflK; Provisional	96.35
PRK12785	166	fliL flagellar basal body-associated protein FliL;	96.28
COG1580	159	FliL Flagellar basal body-associated protein [Cell	96.2
PRK11029	334	FtsH protease regulator HflC; Provisional	96.05
PRK07718	142	fliL flagellar basal body-associated protein FliL;	95.68
PRK13665	316	hypothetical protein; Provisional	95.19
cd03404	266	Band_7_HflK Band_7_HflK: The band 7 domain of flot	95.12
PF12127	316	YdfA_immunity: SigmaW regulon antibacterial; Inter	95.12
PRK05696	170	fliL flagellar basal body-associated protein FliL;	95.02
PRK07021	162	fliL flagellar basal body-associated protein FliL;	94.69
cd03405	242	Band_7_HflC Band_7_HflC: The band 7 domain of flot	94.45
PF03748	99	FliL: Flagellar basal body-associated protein FliL	92.5
TIGR01933	261	hflK HflK protein. HflK and HflC are paralogs enco	91.56
PRK06654	181	fliL flagellar basal body-associated protein FliL;	91.55
cd03407	262	Band_7_4 A subgroup of the band 7 domain of flotil	90.98
PTZ00491	850	major vault protein; Provisional	90.86
TIGR01932	317	hflC HflC protein. HflK and HflC are paralogs enco	88.24
PRK05697	137	flagellar basal body-associated protein FliL-like	87.51
PF11978	118	MVP_shoulder: Shoulder domain; InterPro: IPR021870	84.12
cd03403	215	Band_7_stomatin_like Band_7_stomatin_like: A subgr	83.69
PRK08455	182	fliL flagellar basal body-associated protein FliL;	81.22

>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=5e-49  Score=342.79  Aligned_cols=238  Identities=76%  Similarity=1.144  Sum_probs=224.3

Q ss_pred             HhhceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecch
Q psy8926          19 FNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVS   98 (263)
Q Consensus        19 ~~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~   98 (263)
                      +++|+++|++|++||+++||++.+.+++|||||++||++++..+|+++++++.++..+.|+||.++.+|.+.+||++||.
T Consensus         1 ~~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPfId~V~~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp~   80 (280)
T cd03406           1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIPD   80 (280)
T ss_pred             CCceEEEECCCeEEEEEECCcccccccCCceEEecCCceEEEEEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCHH
Confidence            36799999999999999999998777999999999999999999999999988777889999999999987789999999


Q ss_pred             hHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChH
Q psy8926          99 SVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET  178 (263)
Q Consensus        99 ~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~  178 (263)
                      ++++.+.+|+.++....|.+.+++++|+++|+++++|+++++|+++...+++.+++.++++.+||+|.+|.|++++||++
T Consensus        81 ~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~~  160 (280)
T cd03406          81 SVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPEA  160 (280)
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCHH
Confidence            99999988876666889999999999999999999999988999999999999999999433499999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHhhhcccccccccc
Q psy8926         179 IRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLFDFST  256 (263)
Q Consensus       179 v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  256 (263)
                      +.++|++|++||++.++|.|.++..+.+||++|.+.+++|+|+|+.++|.++++++|||+++.++.||++++|++...
T Consensus       161 V~~aferM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (280)
T cd03406         161 IRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIEDEAFLAREKA  238 (280)
T ss_pred             HHHHHHHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998764

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=100.00  E-value=5.9e-42  Score=305.25  Aligned_cols=235  Identities=21%  Similarity=0.301  Sum_probs=187.6

Q ss_pred             HHHHHHHHHHHhhceEEecCCeEEEEEeCCccccc------ccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCc
Q psy8926           9 IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLST------ISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGV   82 (263)
Q Consensus         9 ~~~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~------v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~   82 (263)
                      .++++++++++++|+++|++|++||+++||++.++      +++|||||++||++++..+|+|.++++.+...+.|+|++
T Consensus         6 ~~~~~~~~~~l~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPfid~V~~vdvR~q~~d~~~~~vlT~D~~   85 (334)
T PRK11029          6 IAIIIIVLVVLYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKK   85 (334)
T ss_pred             HHHHHHHHHHHHheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCCceEEEEEeeEEEEeeCCCceEEcCCCC
Confidence            34445566788899999999999999999999874      489999999999999999999999999988889999999


Q ss_pred             EEEEEEEEEEEeecchhHHHHHhhcccch--hhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhh---
Q psy8926          83 MIYFDRIEVVNVLSVSSVYDIVKNYTADY--DKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN---  157 (263)
Q Consensus        83 ~v~vd~~~~~~~~d~~~v~~~~~~~~~~~--~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~---  157 (263)
                      .|.+|+++.|++.||.+++..+.  +.+.  ....|.+.+++++|+++|+|+++++++++|+++..++++.+++.+.   
T Consensus        86 ~V~VD~~V~yrI~Dp~~~~~~~~--~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~  163 (334)
T PRK11029         86 DLIVDSYIKWRISDFSRYYLATG--GGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTE  163 (334)
T ss_pred             EEEEEEEEEEEECCHHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhccc
Confidence            99999999999999987664322  1122  3578999999999999999999999977899999999999996531   


Q ss_pred             ----------------------------------cCCCCeEEEEEEeeCCCCChHHHHH-HHHHHHHHHHHHHHHHHHHh
Q psy8926         158 ----------------------------------EMAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKV  202 (263)
Q Consensus       158 ----------------------------------~~~~GI~V~~v~I~~i~~p~~v~~a-~~~~~aer~~~~~a~~~~~~  202 (263)
                                                        -.+|||+|.+|.|++++||+++.++ +++|++||++.  |...+++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~--a~~~~ae  241 (334)
T PRK11029        164 DEVATPAADDAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAV--ARRHRSQ  241 (334)
T ss_pred             ccccccccccccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence                                              0289999999999999999999999 77889998876  3222221


Q ss_pred             HH----------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHhhhc
Q psy8926         203 VE----------------KDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEG  247 (263)
Q Consensus       203 ~~----------------~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~~~~~~~~~~  247 (263)
                      ++                .+|+|++++.+++|+|+|++.++.+++-....+-..-...+++
T Consensus       242 ge~~a~~~~a~A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~~~p~~~~~~~~lea  302 (334)
T PRK11029        242 GQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRA  302 (334)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            11                1577777778888888888888876655444443333333333

>TIGR01932 hflC HflC protein

Probab=100.00  E-value=2.3e-40  Score=295.38  Aligned_cols=217  Identities=23%  Similarity=0.306  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHhhceEEecCCeEEEEEeCCcccccc------cCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCc
Q psy8926           9 IVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTI------SGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGV   82 (263)
Q Consensus         9 ~~~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~v------~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~   82 (263)
                      .++++++++++++|+++|+||++||+++||++.++.      ++|||||++||++++..+|+|+++++.+...++|+||+
T Consensus         6 ~~~~~~~~~~l~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~i~~v~~vd~r~q~~~~~~~~vlTkD~~   85 (317)
T TIGR01932         6 IVVIVLLIVVLFQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIFDAKIQTMDGRPDRIPTKEKK   85 (317)
T ss_pred             HHHHHHHHHHHHheEEEECCCeEEEEEecCceeccccccccccCCCeEEEeccccEEEEeeeeEEEecCCcceeECCCCC
Confidence            334445577888999999999999999999998753      48999999999999999999999999887889999999


Q ss_pred             EEEEEEEEEEEeecchhHHHHHhhccc---chhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHH---------------
Q psy8926          83 MIYFDRIEVVNVLSVSSVYDIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI---------------  144 (263)
Q Consensus        83 ~v~vd~~~~~~~~d~~~v~~~~~~~~~---~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i---------------  144 (263)
                      ++.+|+++.|++.||.+++.   .++.   .+.+..|++.+++++|+++|+|+++|+++++|+++               
T Consensus        86 ~V~Vd~~V~yrV~d~~~~~~---~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~  162 (317)
T TIGR01932        86 DIIIDTYIRWRIEDFKKYYL---STGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKI  162 (317)
T ss_pred             EEEEEEEEEEEECCHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccc
Confidence            99999999998888765443   3331   12467899999999999999999999998667666               


Q ss_pred             --------------HHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHH-HHHHHHHHHHHHHHHHHHHhH------
Q psy8926         145 --------------DENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKVV------  203 (263)
Q Consensus       145 --------------~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a-~~~~~aer~~~~~a~~~~~~~------  203 (263)
                                    ..++.+.+.+.+.  +|||+|++|.|++++||+++++| .++|.++|++.  |.+.+.++      
T Consensus       163 ~~~~~~~~~~r~~l~~~i~~~~~~~~~--~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~--a~~~r~ege~~a~~  238 (317)
T TIGR01932       163 NKIAMTITKGREILAREISQIANSQLK--DIGIEVVDVRIKKINYSDELSESIYNRMRSEREQI--ARMHRSQGEEKAEE  238 (317)
T ss_pred             cccccccchhhhhHHHHHHHHHHHHHh--cCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence                          5577777788888  99999999999999999999999 67788888754  33222211      


Q ss_pred             ----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8926         204 ----------EKDAETERKRAVIEAEKEAQIAKIQYEQK  232 (263)
Q Consensus       204 ----------~~~Aeae~~~~ii~A~~~a~a~~i~~~~~  232 (263)
                                +..|+|++++.+++|+|+|++.++.+++.
T Consensus       239 i~a~A~~e~~~~~aeA~a~a~~~~Aegea~a~~~~~~a~  277 (317)
T TIGR01932       239 ILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAY  277 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                      11556667777777777777777776543

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>KOG2962|consensus

Probab=100.00  E-value=1.9e-40  Score=271.88  Aligned_cols=256  Identities=69%  Similarity=1.052  Sum_probs=241.1

Q ss_pred             CchhHHHHHHHHHHHHHHHhhceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCC
Q psy8926           1 MADSLLVGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSG   80 (263)
Q Consensus         1 ~~~~~~i~~~~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D   80 (263)
                      |+.-...++++..+.+.+++++++.|++|++||.+|.|.....+.+||+|..+||+.++..+.+++||.++.+.+|.|+.
T Consensus         1 ~~~~~~~v~~~~a~~~~~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev~nvPCGTsG   80 (322)
T KOG2962|consen    1 MIQLAFLVAAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEVKNVPCGTSG   80 (322)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEecceeeeccCCCCcEEEeeeeeceeeeEEEeeccccccCCCCCCC
Confidence            55556666777777778889999999999999999999998878999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCC
Q psy8926          81 GVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMA  160 (263)
Q Consensus        81 ~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~  160 (263)
                      |+.+.+|-+-++....|+.+++.+.+|+.+||..+|.+.+.-.++..++.+|+.++|.+-.++|.+.++++|++.+.++.
T Consensus        81 GVlIyfdrIEVVN~L~~d~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mA  160 (322)
T KOG2962|consen   81 GVLIYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMA  160 (322)
T ss_pred             cEEEEEehhhhhhhhchhHHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhC
Confidence            99999997777777889999999999999999999999999999999999999999998899999999999999999888


Q ss_pred             CCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHH
Q psy8926         161 PGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQ  240 (263)
Q Consensus       161 ~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~~~  240 (263)
                      .|+.|..|.++.+..|+.+...++.|++|+.+.++|.+.|+..+++||.+|+.++++||.-|+.++|...++++|||+++
T Consensus       161 PGl~iqaVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetek  240 (322)
T KOG2962|consen  161 PGLEIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEK  240 (322)
T ss_pred             CCcEEEEEEecCCCChHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccccccccc
Q psy8926         241 RVAKIEGKYSLFDFST  256 (263)
Q Consensus       241 ~~~~~~~~~~~~~~~~  256 (263)
                      .++++|+.++|++-.+
T Consensus       241 r~~eiE~~~~Lareks  256 (322)
T KOG2962|consen  241 RISEIEDAAFLAREKS  256 (322)
T ss_pred             HHHHHHHHHhHhhhhh
Confidence            9999999999998643

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=100.00  E-value=5.3e-40  Score=300.15  Aligned_cols=240  Identities=15%  Similarity=0.151  Sum_probs=184.9

Q ss_pred             HHHHHHHHHHHHHhhceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEE
Q psy8926           7 VGIVSLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYF   86 (263)
Q Consensus         7 i~~~~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~v   86 (263)
                      ++.++++++++|+++|||+|++||+|||++||++.+ +++|||||++||+++|..+|++.+........++|+|+..|.+
T Consensus        81 i~ii~~~~v~i~l~sg~yiV~e~E~gVV~rFGk~~~-~l~PGLhfk~PfId~V~~vdv~~~~~~~~~~~mLT~D~n~V~V  159 (419)
T PRK10930         81 VGIAAAAVVIIWAASGFYTIKEAERGVVTRFGKFSH-LVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRV  159 (419)
T ss_pred             HHHHHHHHHHHHHHheEEEECCCeEEEEEECCcCcc-eeCCceEEecCceEEEEEEEeEEEEEccCcceeECCCCCEEEE
Confidence            444555566778999999999999999999999987 5999999999999999999998876555556789999999999


Q ss_pred             EEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEE
Q psy8926          87 DRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQ  166 (263)
Q Consensus        87 d~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~  166 (263)
                      |+++.|++.||.++..     .....+..|++.+++++|+++++++++++++++|++|..++++.+++.++.+.+||+|.
T Consensus       160 d~~VqYrI~Dp~~~lf-----~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~  234 (419)
T PRK10930        160 EMNVQYRVTDPEKYLF-----SVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLL  234 (419)
T ss_pred             EEEEEEEECCHHHHHH-----hccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence            9999999999977532     22233678999999999999999999999987899999999999999999555699999


Q ss_pred             EEEeeCCCCChHHHHHHHHHHHHHHHH----HHHHHHHHhHHH-----------HHHHHHHHHHHHHhhHHHH-HHHHHH
Q psy8926         167 AVRVTKPKIPETIRKNYELMEAEKTKL----LISIQHQKVVEK-----------DAETERKRAVIEAEKEAQI-AKIQYE  230 (263)
Q Consensus       167 ~v~I~~i~~p~~v~~a~~~~~aer~~~----~~a~~~~~~~~~-----------~Aeae~~~~ii~A~~~a~a-~~i~~~  230 (263)
                      +|.|++++||+++++||++|.++|+..    ..|+..++....           +|+|.+++.+++|+|+|+. .+|..+
T Consensus       235 ~V~I~di~pP~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~  314 (419)
T PRK10930        235 DVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPE  314 (419)
T ss_pred             EEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            999999999999999999986666543    112222222222           4555555555555555532 444432


Q ss_pred             HHHhhHHHHHHHHhhhcccccccccccCC
Q psy8926         231 QKVMEQESKQRVAKIEGKYSLFDFSTIRP  259 (263)
Q Consensus       231 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~  259 (263)
                      ..       ++..-..-++||+.|..+.+
T Consensus       315 Y~-------kaP~vtr~RlYletme~vl~  336 (419)
T PRK10930        315 YK-------AAPEITRERLYIETMEKVLG  336 (419)
T ss_pred             Hh-------hCHHHHHHHHHHHHHHHHHc
Confidence            22       33445555777777776544

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=7.4e-39  Score=276.18  Aligned_cols=166  Identities=19%  Similarity=0.305  Sum_probs=148.7

Q ss_pred             eEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHH
Q psy8926          23 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD  102 (263)
Q Consensus        23 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~  102 (263)
                      ||+|+||++||+++||++.+++++||+||++||+++++.+|+|+++++.+..+++|+|+.++.+++++.|++.||.+++.
T Consensus         1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~i~~v~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~   80 (242)
T cd03405           1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDPLRFYQ   80 (242)
T ss_pred             CEEeCCCeEEEEEEcCccccccCCCCeeEEcCCcceEEEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCHHHHHH
Confidence            58999999999999999988679999999999999999999999999888788999999999999999998888875443


Q ss_pred             HHhhcccchh--hHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHH
Q psy8926         103 IVKNYTADYD--KALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  180 (263)
Q Consensus       103 ~~~~~~~~~~--~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~  180 (263)
                         .++...+  +..|.+.+++++|+++|+|+++++++++|+++++++.+.+++.++  +|||+|++|.|++++||+++.
T Consensus        81 ---~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~i~  155 (242)
T cd03405          81 ---AVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAK--ELGIEVVDVRIKRIDLPEEVS  155 (242)
T ss_pred             ---HhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHH--ccCcEEEEEEEEeccCCHHHH
Confidence               3333222  478999999999999999999999975699999999999999999  999999999999999999999


Q ss_pred             HH-HHHHHHHHHHH
Q psy8926         181 KN-YELMEAEKTKL  193 (263)
Q Consensus       181 ~a-~~~~~aer~~~  193 (263)
                      ++ .++|.++|++.
T Consensus       156 ~ai~~~~~ae~~~~  169 (242)
T cd03405         156 ESVYRRMRAERERI  169 (242)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99 56688888765

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=1.7e-37  Score=271.33  Aligned_cols=219  Identities=15%  Similarity=0.155  Sum_probs=165.5

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEe-eeeEEEe------------ecCCcccc
Q psy8926          11 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHV-QVTLQTD------------EVKNVPCG   77 (263)
Q Consensus        11 ~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~-d~r~q~~------------~~~~~~~~   77 (263)
                      +++++++++++||++|+||++||+++||++++ +++||+||++||++++..+ |++.++.            ..+...+.
T Consensus         3 ~~~~~~~~~~~s~~~V~~ge~gVV~~fGk~~~-~~~pGlh~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (266)
T cd03404           3 AALLVILWLLSGFYIVQPGERGVVLRFGKYSR-TVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLML   81 (266)
T ss_pred             HHHHHHHHHHcEEEEECCCceEEeEEcCcccc-ccCCceeEecCCCcEEEEEecceeEEeeccccccccccCCCcccceE
Confidence            44456677889999999999999999999986 6999999999999887644 4433221            11224579


Q ss_pred             CCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhh
Q psy8926          78 TSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELN  157 (263)
Q Consensus        78 T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~  157 (263)
                      |+||..+.+|+++.|++.||.++..     +..+.+..|.+.+++++|+++|+|+++|+++++|+++.+++++.+++.++
T Consensus        82 T~D~~~v~vd~~v~yrI~d~~~~~~-----~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~  156 (266)
T cd03404          82 TGDENIVDVEFAVQYRISDPYDYLF-----NVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILD  156 (266)
T ss_pred             eCCCCEEEEEEEEEEEECCHHHHHh-----hCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999888875422     22233678999999999999999999999976699999999999999998


Q ss_pred             cCCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8926         158 EMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLIS----IQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV  233 (263)
Q Consensus       158 ~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a----~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~  233 (263)
                      ...+||+|++|.|++++||+++.++++++.++++....+    +..++....+|++++++.+++|+|++++..+.++...
T Consensus       157 ~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a  236 (266)
T cd03404         157 AYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEA  236 (266)
T ss_pred             ccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            334499999999999999999999998875544332111    1111112236666666667777777777666665443


Q ss_pred             hh
Q psy8926         234 ME  235 (263)
Q Consensus       234 ~~  235 (263)
                      ..
T Consensus       237 ~~  238 (266)
T cd03404         237 AR  238 (266)
T ss_pred             HH
Confidence            33

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>cd03401 Band_7_prohibitin Band_7_prohibitin

Probab=100.00  E-value=1.9e-37  Score=259.31  Aligned_cols=194  Identities=21%  Similarity=0.301  Sum_probs=164.5

Q ss_pred             ceEEecCCeEEEEEeCCccccc-ccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhH
Q psy8926          22 SFHKIEEGHVGVYFRGGALLST-ISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV  100 (263)
Q Consensus        22 ~~~~V~~ge~gVv~~~Gk~~~~-v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v  100 (263)
                      ||++|++|++||+++||+.... +++||+||++||++++..+|++.++++.+. .+.|+|++.+.++..+. |.++|..+
T Consensus         1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~~~~v~~~~~r~~~~~~~~-~~~t~d~~~V~v~~~v~-y~v~~~~~   78 (196)
T cd03401           1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIES-TTGSKDLQMVNITLRVL-FRPDASQL   78 (196)
T ss_pred             CEEEECCCcEEEEEEecCccccCccCCceEEEccccceeEEEEeeeeEEEEee-cccCCCCeEEEEEEEEE-EEeCHHHH
Confidence            6899999999999999987653 699999999999999999999999988753 57899999999996654 45677788


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHH
Q psy8926         101 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  180 (263)
Q Consensus       101 ~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~  180 (263)
                      ...+.+++.++.+..|.+.+++++|+++|+|+++|++ ++|++|+.+|.+.+++.+.  +|||.|+++.|+|++||+++.
T Consensus        79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~-~~R~~i~~~i~~~l~~~l~--~~Gi~i~~v~i~~i~~p~~~~  155 (196)
T cd03401          79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELI-TQREEVSALIREALTERAK--DFGIILDDVSITHLTFSKEFT  155 (196)
T ss_pred             HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHH-hhHHHHHHHHHHHHHHHHH--hCCeEEEEEEEEeccCCHHHH
Confidence            8888888766556789999999999999999999999 4899999999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q psy8926         181 KNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI  224 (263)
Q Consensus       181 ~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a  224 (263)
                      +|+++.+...+..++|+    ....+|++++++++++|+|+++|
T Consensus       156 ~ai~~k~~a~q~~~~a~----~~~~~a~~ea~~~~~~A~gea~a  195 (196)
T cd03401         156 KAVEAKQVAQQEAERAK----FVVEKAEQEKQAAVIRAEGEAEA  195 (196)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhhc
Confidence            99876533332221111    12347888889999999999986

A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.

>TIGR01933 hflK HflK protein

Probab=100.00  E-value=1.6e-35  Score=258.22  Aligned_cols=201  Identities=15%  Similarity=0.159  Sum_probs=154.6

Q ss_pred             eEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHH
Q psy8926          23 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD  102 (263)
Q Consensus        23 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~  102 (263)
                      +|+|+||++||+++||++.+ +++||+||++||+++++.+|++.+....+...+.|+||..|.+|+++.|++.||.++. 
T Consensus         1 ~~iV~~ge~~Vv~~fGk~~~-~l~pGl~~~~P~i~~v~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d~~~~~-   78 (261)
T TIGR01933         1 IYTIGEAERGVVLRFGKYHR-TVDPGLNWKPPFIEEVYPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITDPYKYL-   78 (261)
T ss_pred             CEEeCCCeEEEEEEcCcccc-ccCCcceEECCCceEEEEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECCHHHHH-
Confidence            58999999999999999988 4899999999999999999997644333333579999999999999999998987642 


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHH
Q psy8926         103 IVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN  182 (263)
Q Consensus       103 ~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a  182 (263)
                          |+..+....|++.+++++|+++|+|+++++++++|++|.+++.+.+++.++..++||+|++|.|++++||+++.++
T Consensus        79 ----~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a  154 (261)
T TIGR01933        79 ----FSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEA  154 (261)
T ss_pred             ----HhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHH
Confidence                2333346789999999999999999999999778999999999999999984345999999999999999999999


Q ss_pred             HHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy8926         183 YELMEAEKTKLLI----SIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQY  229 (263)
Q Consensus       183 ~~~~~aer~~~~~----a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~  229 (263)
                      ++++.++++....    ++..+.....+|++++++.+++|+|++++..+++
T Consensus       155 ~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a  205 (261)
T TIGR01933       155 FDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRA  205 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9887554433211    1111111111344444444555555555444443

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=7.8e-36  Score=260.16  Aligned_cols=201  Identities=17%  Similarity=0.189  Sum_probs=169.6

Q ss_pred             CCeEEEEEeCCcccccccCCceeEEcCccceeE-EeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhh
Q psy8926          28 EGHVGVYFRGGALLSTISGPGFHAMIPFITTFR-HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN  106 (263)
Q Consensus        28 ~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~-~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~  106 (263)
                      +|++|||++||++.++ ++|||||++||++++. .+|+|+++++.+. .++|+||..|.+|+++.|++.||. +...+.+
T Consensus         1 q~~~~Vv~rfGk~~~~-l~pGlhf~~P~i~~v~~~~~~r~~~~~~~~-~~lTkD~~~V~vd~~v~yrI~d~~-~~~~~~~   77 (262)
T cd03407           1 QSQVAIIERFGKFFKV-AWPGCHFVIPLVETVAGRLSLRVQQLDVRV-ETKTKDNVFVTVVGQIQYRVSEEN-ATDAFYK   77 (262)
T ss_pred             CcEEEEEeecCccccc-CCCCeEEEeccccceeeEEeeeEEEecCCC-ceEcCCCCEEEEEEEEEEEECCcH-HHHHHHH
Confidence            5899999999999985 9999999999999985 8999999999875 579999999999999888888775 2333333


Q ss_pred             cccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH-H
Q psy8926         107 YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE-L  185 (263)
Q Consensus       107 ~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~-~  185 (263)
                      ++.  ....|.+.+++++|+++|+|+++++++ +|++|..++.+.+++.++  .|||.|++|.|++++||+++.+|++ +
T Consensus        78 ~~~--~~~~l~~~~~s~lR~vig~~~l~eil~-~R~~I~~~i~~~l~~~l~--~~GI~V~~v~I~~i~~p~~v~~A~~~~  152 (262)
T cd03407          78 LGN--PEEQIQSYVFDVLRARIPKLTLDELFE-QKDEIAKAVEEELREAMS--RYGFEIVATLITDIDPDAEVKRAMNEI  152 (262)
T ss_pred             cCC--HHHHHHHHHHHHHHHHhcCccHHHHHh-hHHHHHHHHHHHHHHHHH--hcCcEEEEEEEEecCCCHHHHHHHHHH
Confidence            332  256899999999999999999999995 899999999999999999  9999999999999999999999965 4


Q ss_pred             HHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHH
Q psy8926         186 MEAEKTKLLISIQHQK-----VVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQES  238 (263)
Q Consensus       186 ~~aer~~~~~a~~~~~-----~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~  238 (263)
                      +.|+|++.  +...++     ....+|++++++.+++|+|+|++.++.++....+-..
T Consensus       153 ~~A~~~~~--a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~  208 (262)
T cd03407         153 NAAQRQRV--AAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILS  208 (262)
T ss_pred             HHHHHHHH--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence            57777665  333332     2334899999999999999999999998877666554

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=100.00  E-value=1e-34  Score=246.05  Aligned_cols=204  Identities=24%  Similarity=0.262  Sum_probs=166.1

Q ss_pred             ecCCeEEEEEeCCcccccccCCceeEEcCcccee-EEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHH
Q psy8926          26 IEEGHVGVYFRGGALLSTISGPGFHAMIPFITTF-RHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIV  104 (263)
Q Consensus        26 V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v-~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~  104 (263)
                      |+|||+||+++||++.++ ++||+||++||++++ +.+|+|.+++++++..+.|+|+.++.+++.+.|++.||.++...+
T Consensus         1 V~~ge~~Vv~~~G~~~~~-~~pG~~f~~P~~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~   79 (215)
T cd03403           1 VPQYERGVVERLGKYHRT-LGPGLHFIIPFIDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVDPVKAVYGV   79 (215)
T ss_pred             CCcceEEEEEEcCcCccc-cCCcEEEEeccceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEecHHHHHhcC
Confidence            789999999999999985 999999999999999 999999999999888899999999999999999988998764322


Q ss_pred             hhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926         105 KNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  184 (263)
Q Consensus       105 ~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~  184 (263)
                      .+     ....|.+.+++++|+++++|+++|+++ +|+++.+++++.+++.+.  .|||+|++|.|++++||+++.++++
T Consensus        80 ~~-----~~~~l~~~~~~~lr~~i~~~~~~el~~-~R~~i~~~i~~~l~~~l~--~~Gi~v~~v~i~~i~~p~~~~~ai~  151 (215)
T cd03403          80 ED-----YRYAISQLAQTTLRSVIGKMELDELLS-EREEINAELVEILDEATD--PWGVKVERVEIKDIILPQEIQEAMA  151 (215)
T ss_pred             CC-----HHHHHHHHHHHHHHHHHccccHHHHHh-hHHHHHHHHHHHHHHHHh--ccCeEEEEEEEeeecCCHHHHHHHH
Confidence            22     256899999999999999999999995 899999999999999999  9999999999999999999999965


Q ss_pred             -HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHhhh
Q psy8926         185 -LMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIE  246 (263)
Q Consensus       185 -~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~~~~~~~~~  246 (263)
                       +|.|++++.  |      ...+|++++++.++.|+|++++..=.......+.|....+.+-.
T Consensus       152 ~~~~A~~~~~--a------~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~~~~~  206 (215)
T cd03403         152 KQAEAEREKR--A------KIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEIAKEA  206 (215)
T ss_pred             HHHHHHHHHH--H------HHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc
Confidence             556666544  2      22367777777777787777765411222344444444444433

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=100.00  E-value=2.2e-34  Score=243.91  Aligned_cols=169  Identities=16%  Similarity=0.204  Sum_probs=150.6

Q ss_pred             ceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHH
Q psy8926          22 SFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY  101 (263)
Q Consensus        22 ~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~  101 (263)
                      |+|+|+|||.||+++||++.+++.+|||||++||++. .++|+|+++++.+...+.|+||.++.+++++.|++.||.++.
T Consensus         1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~~~-~~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~Dp~ka~   79 (219)
T cd03402           1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVDTAKAV   79 (219)
T ss_pred             CeEEECCCeeEEEEEcCcCcccccCCceEEEeccceE-EEEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcCHHHHH
Confidence            6899999999999999999997679999999999854 789999999999888899999999999999999999998774


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHh------hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCC
Q psy8926         102 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYI------DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKI  175 (263)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~------~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~  175 (263)
                      .-..+     ....|.+.+++++|+++|+|+++++++      ++|+++..++++.+++.++  .|||+|+++.|+++.|
T Consensus        80 ~~v~~-----~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~--~~GI~V~~v~I~~l~~  152 (219)
T cd03402          80 FNVDD-----YEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLA--VAGVEVVEARITHLAY  152 (219)
T ss_pred             HHcCC-----HHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHH--hhCcEEEEEEEEeecC
Confidence            32222     267999999999999999999999985      3579999999999999999  9999999999999999


Q ss_pred             ChHHHHH-HHHHHHHHHHHHHHHHHH
Q psy8926         176 PETIRKN-YELMEAEKTKLLISIQHQ  200 (263)
Q Consensus       176 p~~v~~a-~~~~~aer~~~~~a~~~~  200 (263)
                      |+++.+| ++||+|+++..  |++..
T Consensus       153 p~ei~~am~~R~~Ae~~~~--Ar~~~  176 (219)
T cd03402         153 APEIAQAMLQRQQASAIIA--ARRKI  176 (219)
T ss_pred             CHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            9999999 77888888766  54444

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-32  Score=240.48  Aligned_cols=204  Identities=25%  Similarity=0.282  Sum_probs=165.7

Q ss_pred             HHHHHHHHHhhceEEecCCeEEEEEeCCcccccccC-CceeEEcCc---c-ceeEEeeeeEEEeec-CCccccCCCCcEE
Q psy8926          11 SLFSLLLVFNYSFHKIEEGHVGVYFRGGALLSTISG-PGFHAMIPF---I-TTFRHVQVTLQTDEV-KNVPCGTSGGVMI   84 (263)
Q Consensus        11 ~~~~~~~l~~~~~~~V~~ge~gVv~~~Gk~~~~v~~-pGlhf~~P~---i-~~v~~~d~r~q~~~~-~~~~~~T~D~~~v   84 (263)
                      +++++++++++++++|++|+.|++++||++.+. ++ ||+||++||   + .....++.+.++++. +++.+.|+|+..|
T Consensus         9 ~l~~~~~~~~~~~~~v~~~~~~vv~r~G~~~~~-~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V   87 (291)
T COG0330           9 LLVILIVLLFSSIFVVKEGERGVVLRFGRYTRT-LGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIV   87 (291)
T ss_pred             HHHHHHHHHHceeEEEcCCceEEEEEecceeee-cCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEE
Confidence            566678888999999999999999999999996 77 999999999   3 334677888899999 7889999999999


Q ss_pred             EEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeE
Q psy8926          85 YFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLF  164 (263)
Q Consensus        85 ~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~  164 (263)
                      .+|.++.|++.||.+....+.     ..+..+.+.+++.+|+++|++++++++++.+..+...+.+.+++.++  +|||.
T Consensus        88 ~vd~~v~~rv~d~~~~~~~v~-----~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~--~~Gi~  160 (291)
T COG0330          88 SVDAVVQYRVTDPQKAVYNVE-----NAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAAD--PWGIK  160 (291)
T ss_pred             EEEEEEEEEEcCHHHHHHhcC-----CHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhh--hcCcE
Confidence            999999999999984433222     24778999999999999999999999974444999999999999999  89999


Q ss_pred             EEEEEeeCCCCChHHHHH-HHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHhhHHHH
Q psy8926         165 IQAVRVTKPKIPETIRKN-YELMEAEKTKLLISIQHQKVV-----EKDAETERKRAVIEAEKEAQI  224 (263)
Q Consensus       165 V~~v~I~~i~~p~~v~~a-~~~~~aer~~~~~a~~~~~~~-----~~~Aeae~~~~ii~A~~~a~a  224 (263)
                      |.+|.|++++||+++.++ .++|.++|++.  +...++++     ..+|++++++.++.|+|++++
T Consensus       161 V~~V~i~~i~~p~ev~~a~~~~~~Aer~~r--a~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a  224 (291)
T COG0330         161 VVDVEIKDIDPPEEVQAAMEKQMAAERDKR--AEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA  224 (291)
T ss_pred             EEEEEEeecCCCHHHHHHHHHHHHHHHHHH--HHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            999999999999999999 55678887765  32222211     124555556655666665555

>KOG3090|consensus

Probab=99.98  E-value=4.7e-31  Score=215.72  Aligned_cols=230  Identities=17%  Similarity=0.250  Sum_probs=194.8

Q ss_pred             HHHHHHhhceEEecCCeEEEEE-eCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEE
Q psy8926          14 SLLLVFNYSFHKIEEGHVGVYF-RGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVV   92 (263)
Q Consensus        14 ~~~~l~~~~~~~V~~ge~gVv~-~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~   92 (263)
                      +++..+..|+|.|+-|++++++ |+|+++..++..|+||.+||+++-..||+|-....+.. ...|+|-++|.+. +-++
T Consensus        29 ~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S-~tGskDLQmVnI~-lRVL  106 (290)
T KOG3090|consen   29 LGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISS-PTGSKDLQMVNIG-LRVL  106 (290)
T ss_pred             hhhheecceeEeecCCceEEEEeccccchhccccCCceEeeeccccceeeeeccCcccccC-CCCCcceeEEEee-eEEe
Confidence            4455667889999999999999 89999988899999999999999999999988777764 4589999999887 3344


Q ss_pred             EeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeC
Q psy8926          93 NVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTK  172 (263)
Q Consensus        93 ~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~  172 (263)
                      ...++..++.+|..+|.+|++..|.+++.+.+++++++|+..+++ +.|++++..|++.|.++..  .+.|.+++|.|++
T Consensus       107 sRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLI-TQRe~VSrliRk~L~eRA~--~Fni~LDDVSiT~  183 (290)
T KOG3090|consen  107 SRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLI-TQREQVSRLIRKILTERAA--DFNIALDDVSITE  183 (290)
T ss_pred             cCCChhhhHHHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHh--ccceEeecceeee
Confidence            456788999999999999999999999999999999999999998 5999999999999999999  9999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHHHhhhcccccc
Q psy8926         173 PKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQESKQRVAKIEGKYSLF  252 (263)
Q Consensus       173 i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e~~~~~~~~~~~~~~~  252 (263)
                      +.|.+++..|++..+-+++    ++|.......+|+.|++.++++|+|||+++++.+++ +.+......+.+||+.+.++
T Consensus       184 l~F~~efTaAiEaKQvA~Q----eAqRA~F~VekA~qek~~~ivrAqGEaksAqliGeA-i~nn~~fi~Lrki~aAr~IA  258 (290)
T KOG3090|consen  184 LTFGKEFTAAIEAKQVAAQ----EAQRAKFIVEKAEQEKQSAIVRAQGEAKSAQLIGEA-IKNNPAFITLRKIEAAREIA  258 (290)
T ss_pred             eecCHHHHHHHHHHHHHHH----HHhhhhhhhHHHHHhhhhhhhhhccchHHHHHHHHH-HhCCccceeehhHHHHHHHH
Confidence            9999999999876543322    122223345589999999999999999999999876 55666666677777777666


Q ss_pred             c
Q psy8926         253 D  253 (263)
Q Consensus       253 ~  253 (263)
                      +
T Consensus       259 ~  259 (290)
T KOG3090|consen  259 Q  259 (290)
T ss_pred             H
Confidence            4

>smart00244 PHB prohibitin homologues

Probab=99.97  E-value=3.6e-30  Score=207.71  Aligned_cols=158  Identities=28%  Similarity=0.402  Sum_probs=142.7

Q ss_pred             hceEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhH
Q psy8926          21 YSFHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSV  100 (263)
Q Consensus        21 ~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v  100 (263)
                      +|+++|+||++||+++||++.+ +++||+||++||++++..+|++.++++.+...+.|+|+.++.+++.+.|++.||.+.
T Consensus         1 ~~~~~V~~g~~~v~~~~G~~~~-~~~pG~~~~~P~~~~~~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~~~~   79 (160)
T smart00244        1 AAIKVVGEGEAGVVERLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDPLKA   79 (160)
T ss_pred             CcEEEEcccEEEEEEecCcccc-ccCCCEEEEecceeEEEEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccHHHH
Confidence            5899999999999999999998 599999999999999999999999999887789999999999999999998899764


Q ss_pred             HHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHH
Q psy8926         101 YDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIR  180 (263)
Q Consensus       101 ~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~  180 (263)
                      .  +...+.  +...|++.+++++|+++++++++++++++|+++++.+.+.+++.++  ++|++|+++.|+++++|+++.
T Consensus        80 ~--~~~~~~--~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~p~~i~  153 (160)
T smart00244       80 V--YRVLDA--DYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAE--AWGIEVEDVEIKDIRLPEEIQ  153 (160)
T ss_pred             h--hhcCCH--HHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEecCCCHHHH
Confidence            2  222222  2258999999999999999999999975799999999999999999  999999999999999999999


Q ss_pred             HHHHH
Q psy8926         181 KNYEL  185 (263)
Q Consensus       181 ~a~~~  185 (263)
                      +++++
T Consensus       154 ~ai~~  158 (160)
T smart00244      154 EAMEQ  158 (160)
T ss_pred             HHHHh
Confidence            99764

prohibitin homologues

>KOG2621|consensus

Probab=99.97  E-value=3.5e-29  Score=211.49  Aligned_cols=226  Identities=20%  Similarity=0.259  Sum_probs=174.9

Q ss_pred             hHHHHHHHHHHHHH----HHhhceEEecCCeEEEEEeCCcccc-cccCCceeEEcCccceeEEeeeeEEEeecCCccccC
Q psy8926           4 SLLVGIVSLFSLLL----VFNYSFHKIEEGHVGVYFRGGALLS-TISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGT   78 (263)
Q Consensus         4 ~~~i~~~~~~~~~~----l~~~~~~~V~~ge~gVv~~~Gk~~~-~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T   78 (263)
                      +|+++++-.+++++    =+++|+.+|++.|++|++|+|++.. ...|||+.|.+|||+++.++|+|+++++++++++.|
T Consensus        32 ~~~l~~~S~llvi~TfP~S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeIlt  111 (288)
T KOG2621|consen   32 EWLLVILSFLLVLMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEILT  111 (288)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecccceeeeeeeeEEeecCCHHHHhc
Confidence            45555444444332    4578889999999999999999865 347999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhc
Q psy8926          79 SGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNE  158 (263)
Q Consensus        79 ~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~  158 (263)
                      +|...+.+|+++.|++.||.-...-+.+     .+...+-..+..+|+++|+.++.|+++ +|+.++.+++..|.+-.. 
T Consensus       112 kDsvtvsVdAvVyyri~dpi~sv~~V~D-----a~~sTr~lAqttLrn~lgtk~L~eils-~r~~is~~~~~~Ld~~T~-  184 (288)
T KOG2621|consen  112 KDSVTISVDAVVYYRISDPIIAVNNVGD-----ADNATRLLAQTTLRNYLGTKTLSEILS-SREVIAQEAQKALDEATE-  184 (288)
T ss_pred             ccceEEEeceEEEEEecCHHHHHHhccC-----HHHHHHHHHHHHHHHHHccCcHHHHHH-hHHHHHHHHHHHhhhccc-
Confidence            9999999999988888888644332222     245667789999999999999999996 899999999999999988 


Q ss_pred             CCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH--
Q psy8926         159 MAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKVMEQ--  236 (263)
Q Consensus       159 ~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~--  236 (263)
                       .|||+|++|.|+|+.+|.+.+.+..                  ++++|..++.++++.|||+.+|.+-..++.-...  
T Consensus       185 -~WGvkVeRVEikDvrlp~qlqrama------------------aeAeA~reA~Akviaaege~~as~al~~aa~v~~~s  245 (288)
T KOG2621|consen  185 -PWGVKVERVEIKDVRLPAQLQRAMA------------------AEAEATREARAKVIAAEGEKKASEALKEAADVISES  245 (288)
T ss_pred             -ccceEEEEEEEeeeechHhhhhhhh------------------chhhhhhhhhhhHHHHHhhhHHHHHHHHhhccccCC
Confidence             9999999999999999999888754                  1224556667777888888877655543322222  


Q ss_pred             HHHHHHHhhhccccccccc
Q psy8926         237 ESKQRVAKIEGKYSLFDFS  255 (263)
Q Consensus       237 e~~~~~~~~~~~~~~~~~~  255 (263)
                      .....+..++..-.++.=.
T Consensus       246 p~alqLryLqtl~sia~e~  264 (288)
T KOG2621|consen  246 PIALQLRYLQTLNSIAAEK  264 (288)
T ss_pred             chhhhhhhhhcchhhhcCC
Confidence            2334445555544444433

>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance

Probab=99.95  E-value=3e-28  Score=199.84  Aligned_cols=158  Identities=24%  Similarity=0.334  Sum_probs=101.2

Q ss_pred             EEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCC--ccccCCCCcEEEEEEEEEEEeecchhHH
Q psy8926          24 HKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKN--VPCGTSGGVMIYFDRIEVVNVLSVSSVY  101 (263)
Q Consensus        24 ~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~--~~~~T~D~~~v~vd~~~~~~~~d~~~v~  101 (263)
                      |+|+||++||++++|++.+ +++||+||++||++++..+|++.++++++.  ..+.|+|+.++.++..+.|++.++..+.
T Consensus         1 ~~V~~g~~~V~~~~G~~~~-~~~~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~~~~~~   79 (179)
T PF01145_consen    1 YTVPPGEVGVVVRFGKVKD-VLGPGLHFVIPFIQKVYVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIEDPPKFV   79 (179)
T ss_dssp             --------------------------------EEE--S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES-CCCCC
T ss_pred             CEeCCCEEEEEEECCeEeE-EECCCeEEEeCCcCeEEEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEechHHHHH
Confidence            5899999999999999988 699999999999999999999999999987  7899999999999988888875665543


Q ss_pred             HHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHH
Q psy8926         102 DIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRK  181 (263)
Q Consensus       102 ~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~  181 (263)
                      .-+ ..+....++.|++.+.+++|+++++|++.++++ +|.++.+.+++.+++.+.  ++||+|.+|.|.++++|+++.+
T Consensus        80 ~~~-~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~-~r~~~~~~v~~~l~~~~~--~~Gi~i~~v~i~~~~~~~~~~~  155 (179)
T PF01145_consen   80 QNY-EGGEEDPENLLRQIVESALREVISSYSLEEIYS-NREEIADEVREQLQEALE--EYGIEITSVQITDIDPPQEVEE  155 (179)
T ss_dssp             CCC-SS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHH-THHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEEECTTHHH
T ss_pred             Hhh-hcchhhhhhhhhhhhhhhhheEeeeeehHHhhh-hhhhhhHhHHHHHhhhcc--ccEEEEEEEEEeecCCCHHHHH
Confidence            322 011223478999999999999999999999996 799999999999999999  9999999999999999999999


Q ss_pred             HHHHH
Q psy8926         182 NYELM  186 (263)
Q Consensus       182 a~~~~  186 (263)
                      ++++.
T Consensus       156 ~i~~~  160 (179)
T PF01145_consen  156 AIEEK  160 (179)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97643

A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.

>KOG2620|consensus

Probab=99.95  E-value=1.4e-28  Score=205.62  Aligned_cols=184  Identities=18%  Similarity=0.228  Sum_probs=149.9

Q ss_pred             EecCCeEEEEEeCCcccccccCCceeEEcCccceeEEe-ee-eEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHH
Q psy8926          25 KIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHV-QV-TLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYD  102 (263)
Q Consensus        25 ~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~-d~-r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~  102 (263)
                      .||+.+++|+.||||+.+ +++||+||..|+++++..+ .+ +++. ..+..+..|+|++.+.+|+++.++++||++- |
T Consensus        11 ~VpQ~~a~VvER~GkF~~-iLePG~~fl~p~~d~i~~v~~lkeia~-~~~~q~aiTkDNV~v~idgvly~rv~dp~~~-d   87 (301)
T KOG2620|consen   11 FVPQQEAAVVERFGKFHR-ILEPGLHFLPPVIDKIAYVHSLKEIAI-LDPKQEAITKDNVFVQIDGVLYYRVVDPYAD-D   87 (301)
T ss_pred             eechhHhHHHHHhhhhhh-hcCCcceechhhhhhHHHHHHHHHHhh-cccccceeecccEEEEEEEEEEEEEeccccc-c
Confidence            499999999999999998 5999999999988887644 22 3333 3344678999999999999999999999874 3


Q ss_pred             HHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHH
Q psy8926         103 IVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKN  182 (263)
Q Consensus       103 ~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a  182 (263)
                        .+||..+.+..|.+.+++.+|+.++++|++.++. .|+.++..|.+++++.+.  .||+++....|+||.||+.+.+|
T Consensus        88 --AsYgvenp~~aI~qlaqttmRsevgkltLD~vFe-er~~ln~sI~eainkA~~--~wG~~clr~eIrDI~pp~~V~~A  162 (301)
T KOG2620|consen   88 --ASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFE-ERNSLNKSIVEAINKAME--AWGYECLRYEIRDIEPPPSVKRA  162 (301)
T ss_pred             --cccccCCHHHHHHHHHHHHHHHhcccccHHHHHH-HHHHHHHHHHHHHHHHHH--HhHHHHHHHhhhhcCCCHHHHHH
Confidence              3567666678899999999999999999999995 899999999999999999  99999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q psy8926         183 YELM-EAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQI  224 (263)
Q Consensus       183 ~~~~-~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a  224 (263)
                      ++.. +|||.+.  |+-.      ++|++|+..|-+|+|++++
T Consensus       163 M~~q~~AeR~kr--Aail------esEger~~~InrAEGek~s  197 (301)
T KOG2620|consen  163 MNMQNEAERMKR--AAIL------ESEGERIAQINRAEGEKES  197 (301)
T ss_pred             HHHHHHHHHHHH--HHHh------hhhhhhHHhhhhhcchhhh
Confidence            7643 6677665  4333      4555555555555555553

>KOG3083|consensus

Probab=99.94  E-value=3.6e-27  Score=192.78  Aligned_cols=216  Identities=18%  Similarity=0.214  Sum_probs=183.6

Q ss_pred             HHHHHHHHHHHhhceEEecCCeEEEEE-eCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEE
Q psy8926           9 IVSLFSLLLVFNYSFHKIEEGHVGVYF-RGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFD   87 (263)
Q Consensus         9 ~~~~~~~~~l~~~~~~~V~~ge~gVv~-~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd   87 (263)
                      |..+.++.-++-+++|.|+-|+++|++ +|.++.+.+.+.|-||.+||.++-..||+|....+++. ...|+|-++|++.
T Consensus        13 gl~l~v~~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~-itGskdLQ~VniT   91 (271)
T KOG3083|consen   13 GLALAVAGGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPV-ITGSKDLQNVNIT   91 (271)
T ss_pred             chhhHHhhhhhhhhhcccCCCceeEEeecccchhhhcccCCceeeeeeccCcEEEeccCCCccccc-ccCchhhhcccce
Confidence            444556667788999999999999999 89999998999999999999999999999888777663 3488999999887


Q ss_pred             EEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEE
Q psy8926          88 RIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQA  167 (263)
Q Consensus        88 ~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~  167 (263)
                      ..+. ....+.+++.+|.+.|.+||+..|.++..+.+++++++++..|++. .|+.++..+++.+.++..  .+|+.+++
T Consensus        92 lril-~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliT-qRe~vS~~v~~~lt~rA~--~Fgl~Ldd  167 (271)
T KOG3083|consen   92 LRIL-FRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT-QRELVSRQVSNDLTERAA--TFGLILDD  167 (271)
T ss_pred             EEEE-ecccccccchHHHhhcccccccccccchHHHHHHHHHhccccchhh-hhHHHHHHHHHHHHHHHH--hhCeeech
Confidence            5443 3456678899999999999999999999999999999999999984 999999999999999999  99999999


Q ss_pred             EEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy8926         168 VRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQKV  233 (263)
Q Consensus       168 v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~~~  233 (263)
                      |.|+.+.|-.++.+|.+.++-+|+..    +.......+|+.++++.+|.|||+++++++...+..
T Consensus       168 vsiThltfGkEFt~AvE~KQVAQQEA----ErarFvVeKAeQqk~aavIsAEGds~aA~li~~sla  229 (271)
T KOG3083|consen  168 VSITHLTFGKEFTEAVEAKQVAQQEA----ERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLA  229 (271)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhheeecccchHHHHHHHHHHh
Confidence            99999999999999977654333322    111224458999999999999999999999976643

>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.85  E-value=2.1e-20  Score=157.41  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=132.9

Q ss_pred             HHhhceEEecCCeEEEEEeCCcccccccCCcee-EE---cCcc---------------ceeEEeeeeEEEeecC--C---
Q psy8926          18 VFNYSFHKIEEGHVGVYFRGGALLSTISGPGFH-AM---IPFI---------------TTFRHVQVTLQTDEVK--N---   73 (263)
Q Consensus        18 l~~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh-f~---~P~i---------------~~v~~~d~r~q~~~~~--~---   73 (263)
                      +..+|.++|++||.||++++|++.+. ++||.| |+   +|++               ..|..++++.+.....  +   
T Consensus        11 i~~~s~~iV~e~~~av~~~~Gk~~~~-~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~   89 (207)
T cd03408          11 IKNGSQLIVREGQAAVFVNEGKVADV-FAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPV   89 (207)
T ss_pred             cccCCEEEEcCCcEEEEEECCEEEEE-ecCCcceeeecCccHHHHhcChhhhCcCCceeEEEEEECEEEeccccCCCCCe
Confidence            34679999999999999999999996 677665 54   4543               3477889988876432  1   


Q ss_pred             -ccccCCCCcEEEEEEEEEEEeecchhHHHHHhh----cccchhhHHHHHHHHHHHHHHhhhcchHHHHhhh-HHHHHHH
Q psy8926          74 -VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKN----YTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL-FDQIDEN  147 (263)
Q Consensus        74 -~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~----~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~-R~~i~~~  147 (263)
                       ....|.|+.++.+++.+.|++.||.++..-+..    |........|++.+++++|++++++++++++..+ |++++++
T Consensus        90 ~~~~~~~~~v~v~v~~~~~~kI~Dp~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~  169 (207)
T cd03408          90 FGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA  169 (207)
T ss_pred             eeeCCccceEEEEeeEEEEEEEcCHHHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHH
Confidence             124678899999999999999999877554421    1111236799999999999999999999998744 9999999


Q ss_pred             HHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926         148 LKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  184 (263)
Q Consensus       148 i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~  184 (263)
                      +++.+++.+.  .||++|.++.|++++||+++++++.
T Consensus       170 v~~~l~~~~~--~~Gi~i~~v~I~~i~~p~e~~~ai~  204 (207)
T cd03408         170 VREALAPWFA--SFGLELVSVYIESISYPDEVQKLID  204 (207)
T ss_pred             HHHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHH
Confidence            9999999999  9999999999999999999998865

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.81  E-value=5.8e-19  Score=136.99  Aligned_cols=121  Identities=17%  Similarity=0.249  Sum_probs=107.4

Q ss_pred             EeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhh
Q psy8926          61 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL  140 (263)
Q Consensus        61 ~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~  140 (263)
                      .+|+|.++.+.+ ..++|+||.++.+|.++.|++ +|.++...+..+|.++.+..|++.+++++|+++|+|+++++++++
T Consensus         2 ~~~~r~~~~~~~-~~v~T~D~~~v~vd~~v~y~V-~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~   79 (124)
T cd03400           2 EYSTRLQEVDEK-IDVLSKEGLSINADVSVQYRI-NPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTK   79 (124)
T ss_pred             cccceeeecccc-eEEECCCCCEEEEEEEEEEEE-ChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhh
Confidence            367888888765 578999999999998877765 677777777777766557789999999999999999999999768


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         141 FDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       141 R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      |++|.+++++.+++.+.  +|||+|.+|.|++++||+++.+|+++
T Consensus        80 R~~i~~~i~~~l~~~~~--~~Gi~v~~v~i~~i~~P~~v~~aI~~  122 (124)
T cd03400          80 RKEIESAIKKELIEEFV--GDGLILEEVLLRNIKLPDQIADAIEA  122 (124)
T ss_pred             HHHHHHHHHHHHHHHhc--cCCeEEEEEEEecccCCHHHHHHHHh
Confidence            99999999999999999  99999999999999999999999874

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.78  E-value=1.3e-16  Score=148.12  Aligned_cols=158  Identities=12%  Similarity=0.145  Sum_probs=122.9

Q ss_pred             ceEEecCCeEEEEEeCC--------cccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEE
Q psy8926          22 SFHKIEEGHVGVYFRGG--------ALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVN   93 (263)
Q Consensus        22 ~~~~V~~ge~gVv~~~G--------k~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~   93 (263)
                      .+|+.-+...+++..++        +....++.+|+||.+|++++..++++++..+++....+.|+||.++.++++....
T Consensus        33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~v~  112 (548)
T COG2268          33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVK  112 (548)
T ss_pred             eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEeeeeeeeeeeeeeeeEecCCCccceeEEEEEE
Confidence            56655444444444331        2223368999999999999999999999888887567899999999987664444


Q ss_pred             eec-chhHHHHHhhcccc--h-h-hHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Q psy8926          94 VLS-VSSVYDIVKNYTAD--Y-D-KALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAV  168 (263)
Q Consensus        94 ~~d-~~~v~~~~~~~~~~--~-~-~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v  168 (263)
                      +-+ +..+......++..  . + ...+...+.+++|.+++++|+.+++ ++|..|...+.+.+...|+  ..|+.|+++
T Consensus       113 i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~-edR~~F~~~V~~~v~~dL~--k~Gl~l~s~  189 (548)
T COG2268         113 IGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELN-EDRLGFAQVVQEVVGDDLS--KMGLVLDSL  189 (548)
T ss_pred             ecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHh-hHHhhHHHHHHHHHHHHHH--hcCeeeeee
Confidence            432 22344444455443  2 2 6788899999999999999999997 5999999999999999999  899999999


Q ss_pred             EeeCCCCC-------hHHHHH
Q psy8926         169 RVTKPKIP-------ETIRKN  182 (263)
Q Consensus       169 ~I~~i~~p-------~~v~~a  182 (263)
                      .|.|+.-|       ..+.++
T Consensus       190 ~I~~i~d~~~~~~d~~~yLda  210 (548)
T COG2268         190 AINDINDTSKENQDPNNYLDA  210 (548)
T ss_pred             eecccccccccccChhhhhhh
Confidence            99999999       777777

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=99.72  E-value=9e-17  Score=125.38  Aligned_cols=119  Identities=15%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             eeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHH-HHHhhccc---chhhHHHHHHHHHHHHHHhhhcchHHHH
Q psy8926          62 VQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY-DIVKNYTA---DYDKALIFNKVHHELNQFCSIHNLHEVY  137 (263)
Q Consensus        62 ~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~-~~~~~~~~---~~~~~~l~~~v~~~lr~v~~~~~~~e~~  137 (263)
                      +|+|+++++++.+.+.|+|++++.+++++.|++.||.++. ..+..|+.   ......+.+.+++++|+++|+|++++++
T Consensus         2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~   81 (128)
T cd03399           2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY   81 (128)
T ss_pred             ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5789999999988999999999999999999999988754 44444432   2237899999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHH
Q psy8926         138 IDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNY  183 (263)
Q Consensus       138 ~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~  183 (263)
                      + +|++|..++.+.+++.++  +|||+|.++.|+++++|+.+.+++
T Consensus        82 ~-~R~~i~~~i~~~v~~~~~--~~Gi~i~~v~I~~i~~~~~~~~~~  124 (128)
T cd03399          82 E-DRDKFAEQVQEVVAPDLN--KMGLELDSFTIKDITDTDGYLNNL  124 (128)
T ss_pred             H-hHHHHHHHHHHHHHHHHH--HCCCEEEEEeeEEecCCCCCHHHc
Confidence            5 899999999999999999  999999999999999999977664

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.

>KOG2668|consensus

Probab=99.64  E-value=2.3e-14  Score=124.81  Aligned_cols=157  Identities=13%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             eEEecCCeEEEEEeCCcccccccCCceeEEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEee--cchhH
Q psy8926          23 FHKIEEGHVGVYFRGGALLSTISGPGFHAMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL--SVSSV  100 (263)
Q Consensus        23 ~~~V~~ge~gVv~~~Gk~~~~v~~pGlhf~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~--d~~~v  100 (263)
                      |++-++++..+++.+|.-.. .+-+| .|.+|| +++.+||+++.++++....+.|+.|+|+.+.++....+.  |+..+
T Consensus         2 f~~~~~~~~l~itg~g~~~~-~lv~~-~wvf~w-q~~q~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~el   78 (428)
T KOG2668|consen    2 FKVAGASQYLAITGGGIEDI-KLVKK-SWVFPW-QQCTVFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADEL   78 (428)
T ss_pred             CccCCccceEEeecccccCc-eeccc-ceeeee-eeeeEEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHHH
Confidence            45667788777777776544 35554 266688 999999999999998877789999999999887665543  33322


Q ss_pred             --HHHHhhcccch-h-hHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCC
Q psy8926         101 --YDIVKNYTADY-D-KALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIP  176 (263)
Q Consensus       101 --~~~~~~~~~~~-~-~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p  176 (263)
                        +--..++|... + ...+...+....|.+++++|++++|- +|.+|..++++..+.++.  ++||.|.+++|+|+.-.
T Consensus        79 L~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyK-drk~F~k~Vfeva~~dl~--~mGi~I~s~tiKdl~D~  155 (428)
T KOG2668|consen   79 LLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYK-DRKEFKKEVFEVAQLDLG--QMGIVIYSATIKDLVDV  155 (428)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHh-hHHHHHHHHHHHhhhhhh--hcceEEEEeEhhhhhcc
Confidence              22223555432 2 67888899999999999999999995 899999999999999999  99999999999999888


Q ss_pred             h--HHHHHHHH
Q psy8926         177 E--TIRKNYEL  185 (263)
Q Consensus       177 ~--~v~~a~~~  185 (263)
                      +  ++..++.+
T Consensus       156 ~g~~YlssLGk  166 (428)
T KOG2668|consen  156 PGHEYLSSLGK  166 (428)
T ss_pred             cchHHHHHhhh
Confidence            7  57776543

>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins

Probab=99.53  E-value=5.3e-13  Score=101.71  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=96.8

Q ss_pred             eeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHH
Q psy8926          64 VTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQ  143 (263)
Q Consensus        64 ~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~  143 (263)
                      .+..+.+.+...+.|+||.++.+++++.|++.+|..+  .+...+... ...+.+.+.+++|+++++|+++++. ++|.+
T Consensus         4 ~~~~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~~~--~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~-~~r~~   79 (121)
T cd02106           4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKA--LYNVRDPED-EEALRQLAQSALRSVIGKMTLDELL-EDRDE   79 (121)
T ss_pred             ceeEEecCCCceEEecCCCEEEEEEEEEEEEeCHHHH--HHhcCCccH-HHHHHHHHHHHHHHHHccccHHHHH-hhHHH
Confidence            4455666666778999999999999988888777622  222222222 5799999999999999999999997 58999


Q ss_pred             HHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         144 IDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       144 i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      +.+.+++.+...++  .||++|.++.|+++++|+++.+++++
T Consensus        80 i~~~v~~~l~~~~~--~~Gi~i~~v~i~~i~~~~~~~~ai~~  119 (121)
T cd02106          80 IAAEVREALQEDLD--KYGIEVVDVRIKDIDPPEEVQEAMED  119 (121)
T ss_pred             HHHHHHHHHHHHHH--hcCCEEEEEEEEecCCCHHHHHHHHh
Confidence            99999999999999  99999999999999999999998764

This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i

>PF13421 Band_7_1: SPFH domain-Band 7 family

Probab=99.33  E-value=2.5e-10  Score=96.32  Aligned_cols=162  Identities=16%  Similarity=0.224  Sum_probs=116.7

Q ss_pred             hhceEEecCCeEEEEEeCCcccccccCCcee-------------------EEcCccceeEEeeeeEEE-eecC---Cccc
Q psy8926          20 NYSFHKIEEGHVGVYFRGGALLSTISGPGFH-------------------AMIPFITTFRHVQVTLQT-DEVK---NVPC   76 (263)
Q Consensus        20 ~~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh-------------------f~~P~i~~v~~~d~r~q~-~~~~---~~~~   76 (263)
                      ..|-.+|++||.+|.+.-|++.+ +.+||-|                   +..||-..|+.++++... ..+.   +...
T Consensus        13 ~GS~LiV~egQ~Avfv~~G~i~d-~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eVyFvn~~~~~~~kwGT~~pi~~   91 (211)
T PF13421_consen   13 NGSQLIVREGQCAVFVNDGKIAD-VFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEVYFVNTKEITNIKWGTPNPIPY   91 (211)
T ss_pred             CCCEEEECCCCEEEEEECCEEEE-EecCceEEEecCCchHHHHHhhhccCCCCCceEEEEEEECeEecCCccCCCCCeee
Confidence            45778999999999999999998 6999999                   234666677777776653 2221   1111


Q ss_pred             cCCC--CcEEEEEEEEEEEeecchhHHHHHhhcccch---h-hHHHHHHHHHHHHHHhhh--cchHHHHhhhHHHHHHHH
Q psy8926          77 GTSG--GVMIYFDRIEVVNVLSVSSVYDIVKNYTADY---D-KALIFNKVHHELNQFCSI--HNLHEVYIDLFDQIDENL  148 (263)
Q Consensus        77 ~T~D--~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~---~-~~~l~~~v~~~lr~v~~~--~~~~e~~~~~R~~i~~~i  148 (263)
                      ...+  .+.+..-+.-.+++.||..+..-+---...+   + ..++++.+...+.+.+++  +++.|+- .+-.+|++.+
T Consensus        92 ~D~~~~~v~lra~G~ys~rI~Dp~~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~-a~~~eis~~~  170 (211)
T PF13421_consen   92 RDPEYGPVRLRAFGTYSFRIVDPVLFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIP-AHLDEISEAL  170 (211)
T ss_pred             cCCCCCcEEEEEEEEEEEEEeCHHHHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHH
Confidence            1122  2334333444557789987654332111111   1 567888877778888876  5778885 4789999999


Q ss_pred             HHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         149 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       149 ~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      ++.++..++  .+|+++.++.|.+|++|+++++++++
T Consensus       171 ~~~l~~~~~--~~Gi~l~~f~I~~i~~pee~~~~i~~  205 (211)
T PF13421_consen  171 KEKLNPEFE--RYGIELVDFGIESISFPEEVQKAIDK  205 (211)
T ss_pred             HHHHHHHHH--hcCcEEEEEEEEeecCCHHHHHHHHH
Confidence            999999998  99999999999999999999998874

>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]

Probab=98.81  E-value=2.7e-07  Score=79.11  Aligned_cols=161  Identities=10%  Similarity=0.114  Sum_probs=114.9

Q ss_pred             hceEEecCCeEEEEEeCCcccccccCCcee-------------------EEcCccceeEEeeeeEEE-eecC-Ccc--cc
Q psy8926          21 YSFHKIEEGHVGVYFRGGALLSTISGPGFH-------------------AMIPFITTFRHVQVTLQT-DEVK-NVP--CG   77 (263)
Q Consensus        21 ~~~~~V~~ge~gVv~~~Gk~~~~v~~pGlh-------------------f~~P~i~~v~~~d~r~q~-~~~~-~~~--~~   77 (263)
                      .|..+|.|++.++.+..|++.+..-++|.|                   |..|+-++|+.++++.+. ..+. +++  +.
T Consensus        39 Gs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~  118 (345)
T COG4260          39 GSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYF  118 (345)
T ss_pred             CcEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeecc
Confidence            567899999999999999998864457865                   344666778888877665 3332 112  22


Q ss_pred             C-CC--CcEEEEEEEEEEEeecchhHHHHHhhcccch---h-hHHHHHHHHHHHHHHhhhcc--hHHHHhhhHHHHHHHH
Q psy8926          78 T-SG--GVMIYFDRIEVVNVLSVSSVYDIVKNYTADY---D-KALIFNKVHHELNQFCSIHN--LHEVYIDLFDQIDENL  148 (263)
Q Consensus        78 T-~D--~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~---~-~~~l~~~v~~~lr~v~~~~~--~~e~~~~~R~~i~~~i  148 (263)
                      . .+  +..+....+-.+.+.||-.+.+.+..-...+   + ++++-+.+..++...+.++-  +..+- .+.-++++-+
T Consensus       119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~lt-an~~elsk~m  197 (345)
T COG4260         119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLT-ANQMELSKYM  197 (345)
T ss_pred             cccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhh-hhHHHHHHHH
Confidence            1 22  3444444444556778887666554222222   2 56777888888888888863  34443 4778899999


Q ss_pred             HHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926         149 KTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  184 (263)
Q Consensus       149 ~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~  184 (263)
                      ++.|.+.+.  .+|..|++|.|..|++|++.++.++
T Consensus       198 ~e~Ld~q~~--q~Gm~v~sfqvaSisypde~Q~lin  231 (345)
T COG4260         198 AEVLDEQWT--QYGMAVDSFQVASISYPDESQALIN  231 (345)
T ss_pred             HHHHhHHHH--hhCceEeeEEEEEecCcHHHHHHHH
Confidence            999999999  8899999999999999999999876

>PTZ00491 major vault protein; Provisional

Probab=98.35  E-value=7.2e-05  Score=73.47  Aligned_cols=152  Identities=11%  Similarity=0.030  Sum_probs=92.0

Q ss_pred             EEecCCeEEEEEeCC-cccccccCCceeEEcCccceeEEeeeeE---------EEee--c-C-----CccccCCCCcEEE
Q psy8926          24 HKIEEGHVGVYFRGG-ALLSTISGPGFHAMIPFITTFRHVQVTL---------QTDE--V-K-----NVPCGTSGGVMIY   85 (263)
Q Consensus        24 ~~V~~ge~gVv~~~G-k~~~~v~~pGlhf~~P~i~~v~~~d~r~---------q~~~--~-~-----~~~~~T~D~~~v~   85 (263)
                      |.||-+...=+|.+- +-.+.+.||-+.+.-|- +.+..++++-         ..+-  . |     -..+-|+|...+.
T Consensus       465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd-E~ftvlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhArL~  543 (850)
T PTZ00491        465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD-EEFTVLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHARLA  543 (850)
T ss_pred             EEcCCCcEEEEEEcccCceEEEECCceEEecCC-CceEEEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccceEE
Confidence            455555555555321 22355789999888886 5555555421         1110  0 1     1246899999999


Q ss_pred             EEEEEEEEee-cchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHH--------Hh
Q psy8926          86 FDRIEVVNVL-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQR--------EL  156 (263)
Q Consensus        86 vd~~~~~~~~-d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~--------~l  156 (263)
                      +...-.|+.- ++..-.+.-+.|.....-..+-..+.+.+|..+++.+++++....-.-|...+.....+        .+
T Consensus       544 l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l~F  623 (850)
T PTZ00491        544 LQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSLRF  623 (850)
T ss_pred             EEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccceEE
Confidence            9877778764 33222222233322111234556788999999999999999752223455555552222        23


Q ss_pred             hcCCCCeEEEEEEeeCCCCChH
Q psy8926         157 NEMAPGLFIQAVRVTKPKIPET  178 (263)
Q Consensus       157 ~~~~~GI~V~~v~I~~i~~p~~  178 (263)
                      .  ..|+.|++|.|+++.|-++
T Consensus       624 ~--~N~lvit~VDvqsvEpvD~  643 (850)
T PTZ00491        624 P--ANNLVITNVDVQSVEPVDE  643 (850)
T ss_pred             c--cCCeEEEEEeeeeeeecCH
Confidence            3  6799999999999998764

>PRK10930 FtsH protease regulator HflK; Provisional

Probab=96.35  E-value=0.045  Score=50.97  Aligned_cols=75  Identities=16%  Similarity=0.153  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHH
Q psy8926         146 ENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVIEAEKEAQ  223 (263)
Q Consensus       146 ~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~ii~A~~~a~  223 (263)
                      .+|...+.+.+...--.. =..+.|.++.+-+-.--  +.++..-++...|++.++....+|++++...+-+|+|+|+
T Consensus       210 ~~I~~~i~~~l~e~l~~y-~~GI~V~~V~I~di~pP--~eV~~Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~  284 (419)
T PRK10930        210 TVIRSDTQRELEETIRPY-DMGITLLDVNFQAARPP--EEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQ  284 (419)
T ss_pred             HHHHHHHHHHHHHHHhhc-CCCeEEEEEEEeecCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667777776210111 12577788865432222  2233334444446555554445777777775556666554

>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=96.28  E-value=0.19  Score=40.85  Aligned_cols=52  Identities=12%  Similarity=0.103  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         118 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       118 ~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      +.+++.+-..+++.+.+|+.+ .++..+.+++.+.++..+.  + | .|++|.++++
T Consensus       111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~--~-~-~V~~VlFt~F  163 (166)
T PRK12785        111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALA--P-A-QVNAVLFKEV  163 (166)
T ss_pred             hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcC--C-C-ceeEEEEEee
Confidence            678888888899999999975 4688999999999999887  3 3 3888888875

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]

Probab=96.20  E-value=0.2  Score=40.32  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCC
Q psy8926         118 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPK  174 (263)
Q Consensus       118 ~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~  174 (263)
                      +.+++++...+++.|.+++.+ .+++++..++++.++..+.  . |-.|.+|.++++.
T Consensus       103 p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~--~-g~~V~dV~fT~fi  157 (159)
T COG1580         103 PEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILK--E-GQVVKDVLFTNFI  157 (159)
T ss_pred             HHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHh--c-CCeeEEEeeehhh
Confidence            789999999999999999977 6789999999999999997  4 4499999998875

>PRK11029 FtsH protease regulator HflC; Provisional

Probab=96.05  E-value=0.3  Score=44.18  Aligned_cols=36  Identities=6%  Similarity=0.119  Sum_probs=26.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy8926         196 SIQHQKVVEKDAETERKRAVIEAEKEAQIAKIQYEQ  231 (263)
Q Consensus       196 a~~~~~~~~~~Aeae~~~~ii~A~~~a~a~~i~~~~  231 (263)
                      |++.+.....+|++++++..++|+|+.++.++.++.
T Consensus       229 Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA  264 (334)
T PRK11029        229 AEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEA  264 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444588888888889988888888877654

>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=95.68  E-value=0.3  Score=38.55  Aligned_cols=52  Identities=15%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         118 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       118 ~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      +.+++.+-..+++.+.+|+-+ .+++.+.+++.+.++..+.  . | .|.+|.++++
T Consensus        87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~--~-g-~V~~Vyft~f  139 (142)
T PRK07718         87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQ--E-G-KVEKVYITSF  139 (142)
T ss_pred             hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhc--c-C-ceEEEEEEee
Confidence            578888889999999999875 4689999999999998886  3 5 6888888765

>PRK13665 hypothetical protein; Provisional

Probab=95.19  E-value=0.21  Score=43.23  Aligned_cols=102  Identities=13%  Similarity=0.177  Sum_probs=60.2

Q ss_pred             CCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHH
Q psy8926          72 KNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTA  151 (263)
Q Consensus        72 ~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~  151 (263)
                      |......+||..+.+.    -+++....+..++   |...++..+-..-+..+..+=+.-+..+++ ++-+.|+.-+   
T Consensus       135 P~i~aVAkdGIql~~k----ARVTVRaNi~rLV---GGAgEeTIiARVGEgIVttIGSa~~hk~VL-EnPd~ISk~V---  203 (316)
T PRK13665        135 PFIAAVAKDGIEVKAK----ARVTVRANIDRLV---GGAGEETIIARVGEGIVSTIGSSESHKEVL-ENPDSISKTV---  203 (316)
T ss_pred             CcchhhcccCeEEEEE----EEEEeehhHHHHh---CCCcceeeEeeecCceeecccCcchHHHHh-cCHHHHHHHH---
Confidence            4444567899998754    3444444444444   322233444333333333333344566777 4667776433   


Q ss_pred             HHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         152 LQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       152 l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      |.+-|+. +.-++|.++.|-|++.-+++-.-++.
T Consensus       204 L~kGLDa-gTAFeIlSIDIADvdVG~NIGA~Lq~  236 (316)
T PRK13665        204 LSKGLDA-GTAFEILSIDIADVDVGKNIGAKLQT  236 (316)
T ss_pred             HhccCCc-CceeEEEEEeeeccccchhhchhhhH
Confidence            4455653 56799999999999988887665543

>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins

Probab=95.12  E-value=0.089  Score=45.85  Aligned_cols=28  Identities=25%  Similarity=0.128  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy8926         204 EKDAETERKRAVIEAEKEAQIAKIQYEQ  231 (263)
Q Consensus       204 ~~~Aeae~~~~ii~A~~~a~a~~i~~~~  231 (263)
                      +.+|++++++.+.+|+|+|++..+.++.
T Consensus       196 ~~eae~~a~~~~~~A~~ea~~~~~~A~a  223 (266)
T cd03404         196 INEAEAYANEVVPKARGEAARIIQEAEA  223 (266)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence            3345555555555555555555444443

This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365

Probab=95.12  E-value=0.61  Score=40.61  Aligned_cols=99  Identities=13%  Similarity=0.193  Sum_probs=60.5

Q ss_pred             ccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHH
Q psy8926          74 VPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQ  153 (263)
Q Consensus        74 ~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~  153 (263)
                      .....+||..+.+.+    +++....+..++   |...++..+-..-+..+..+=+.-+..+++ ++-+.|++-+.+   
T Consensus       132 i~aVAkdGIql~~kA----rVTVRaNi~rLV---GGAgEeTIiARVGEgIVttiGSa~~hk~VL-EnPd~ISk~VL~---  200 (316)
T PF12127_consen  132 IAAVAKDGIQLKVKA----RVTVRANIDRLV---GGAGEETIIARVGEGIVTTIGSAESHKEVL-ENPDSISKTVLE---  200 (316)
T ss_pred             hhhhhcCCeEEEEEE----EEEEEecHHHhc---cCCCcHHHHHHHccceeeeeccchhHHHHh-cCHHHHHHHHHh---
Confidence            344678999987653    333333343333   333345555555555444444445667777 366777665543   


Q ss_pred             HHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926         154 RELNEMAPGLFIQAVRVTKPKIPETIRKNYE  184 (263)
Q Consensus       154 ~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~  184 (263)
                      +-|+. +.-++|.++.|-|++.-+++-..++
T Consensus       201 kgLDa-gTAFeIlSIDIaDidVG~NIGA~Lq  230 (316)
T PF12127_consen  201 KGLDA-GTAFEILSIDIADIDVGENIGAKLQ  230 (316)
T ss_pred             hCCCc-CceeEEEEeeeeccccchhhchhhh
Confidence            34543 5669999999999998888766554

Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.

>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=95.02  E-value=0.69  Score=37.63  Aligned_cols=56  Identities=13%  Similarity=0.121  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCC-eEEEEEEeeCC
Q psy8926         117 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPG-LFIQAVRVTKP  173 (263)
Q Consensus       117 ~~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~G-I~V~~v~I~~i  173 (263)
                      .+.+++.+-..+++.+.+|+.+ .++..+.+++.+.++..++. ..| -.|++|.++++
T Consensus       110 ~p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~-~~g~~~V~~VlFt~f  167 (170)
T PRK05696        110 IPLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQK-VTGKPVVEKVLFTGF  167 (170)
T ss_pred             hHHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHh-hcCCCceeEEeeeec
Confidence            3678899999999999999975 46788999999888888862 223 36888888875

>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=94.69  E-value=1.6  Score=35.11  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         118 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       118 ~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      +.+++.+-..++..+.+|+.+ .++..+.+++.+.++..+......-.|.+|.++++
T Consensus       103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f  159 (162)
T PRK07021        103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF  159 (162)
T ss_pred             HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence            578888888899999999965 46889999999999998862122246888888875

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins

Probab=94.45  E-value=0.38  Score=41.13  Aligned_cols=27  Identities=33%  Similarity=0.286  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy8926         206 DAETERKRAVIEAEKEAQIAKIQYEQK  232 (263)
Q Consensus       206 ~Aeae~~~~ii~A~~~a~a~~i~~~~~  232 (263)
                      +|+|++++.+++|+|+|++.++.+++-
T Consensus       196 ~Aea~a~a~~~~a~gea~a~~~~~~a~  222 (242)
T cd03405         196 LAEAYREAQEIRGEGDAEAARIYAEAY  222 (242)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            667777777777777777777666543

This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la

>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []

Probab=92.50  E-value=3  Score=30.18  Aligned_cols=53  Identities=11%  Similarity=0.172  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         117 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       117 ~~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      .+.+++.+...+++++.+++-+ .++..+.+++.+.+++.+.    +-.|.+|.++++
T Consensus        43 ~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~----~~~V~~V~ft~f   96 (99)
T PF03748_consen   43 MPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILG----KGKVKDVYFTDF   96 (99)
T ss_pred             cHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhc----cCcEEEEEEEEE
Confidence            3678899999999999999976 5788999999999999886    233888887764

FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body

>TIGR01933 hflK HflK protein

Probab=91.56  E-value=0.75  Score=39.89  Aligned_cols=86  Identities=14%  Similarity=0.142  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHH---hhcCCCCeEEEEEEeeCCCCChHHHHHH------HHH--HHHHHHH---HHHHHHHHhHHHHHH
Q psy8926         143 QIDENLKTALQRE---LNEMAPGLFIQAVRVTKPKIPETIRKNY------ELM--EAEKTKL---LISIQHQKVVEKDAE  208 (263)
Q Consensus       143 ~i~~~i~~~l~~~---l~~~~~GI~V~~v~I~~i~~p~~v~~a~------~~~--~aer~~~---~~a~~~~~~~~~~Ae  208 (263)
                      ++.+.+.+.+...   +.  -..+.|.++.+.+ ..-+.+.+..      +++  +++..+.   ..|+...+....+|+
T Consensus       119 ~i~~~l~~~~~~~~~GI~--V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Ae  195 (261)
T TIGR01933       119 DTKERLNEIIDNYDLGIT--VTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEAR  195 (261)
T ss_pred             HHHHHHHHHHhhhcCCcE--EEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555566666542   33  3468888888665 3344444321      111  1121111   112222233345899


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Q psy8926         209 TERKRAVIEAEKEAQIAKIQYEQ  231 (263)
Q Consensus       209 ae~~~~ii~A~~~a~a~~i~~~~  231 (263)
                      |++++.+++|+|++++.++..++
T Consensus       196 a~~~~~~~~a~g~a~~~~~~~~a  218 (261)
T TIGR01933       196 GYKERRINRAKGDVARFTKLLAE  218 (261)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHH
Confidence            99999999999999998877663

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)

>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=91.55  E-value=4.8  Score=33.06  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         117 FNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       117 ~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      .+.+++.+...+++.+.+|+-  ++.++.+++.+.++..|.  . | .|.+|.++++
T Consensus       126 ~pqIRD~Ii~~LssKt~~eL~--Gk~~LKeEI~~rIN~iL~--~-G-kV~~VYFTeF  176 (181)
T PRK06654        126 KVRLKDIIREYFSQKTGQELK--NESQIKAEIKARINSILR--N-G-EIKDIAFTQI  176 (181)
T ss_pred             cHHHHHHHHHHHHhCCHHHHc--CHHHHHHHHHHHHHHhcC--C-C-ceEEEEEEEE
Confidence            368889999999999999995  678999999999998887  2 2 3677776654

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins

Probab=90.98  E-value=1.5  Score=38.21  Aligned_cols=26  Identities=4%  Similarity=-0.186  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy8926         204 EKDAETERKRAVIEAEKEAQIAKIQY  229 (263)
Q Consensus       204 ~~~Aeae~~~~ii~A~~~a~a~~i~~  229 (263)
                      ..+|++++++.++.|+|+++.-....
T Consensus       185 ~~~Aeg~a~a~~~~A~g~~~~~~~~~  210 (262)
T cd03407         185 RLQGVGAAEQRQAIADGLRESILSLA  210 (262)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34777888887788888777554443

This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

>PTZ00491 major vault protein; Provisional

Probab=90.86  E-value=2  Score=43.11  Aligned_cols=32  Identities=31%  Similarity=0.382  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHH
Q psy8926         206 DAETERKRAVIEAEKEAQIAKIQYEQKVMEQE  237 (263)
Q Consensus       206 ~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~e  237 (263)
                      +|+|.++++.|+++++-+++++++++..-+.+
T Consensus       720 ~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~  751 (850)
T PTZ00491        720 EALAEAEARLIEAEAEVEQAELRAKALRIEAE  751 (850)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhH
Confidence            55566666667777665555555444433333

>TIGR01932 hflC HflC protein

Probab=88.24  E-value=2.2  Score=38.34  Aligned_cols=29  Identities=24%  Similarity=0.208  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy8926         203 VEKDAETERKRAVIEAEKEAQIAKIQYEQ  231 (263)
Q Consensus       203 ~~~~Aeae~~~~ii~A~~~a~a~~i~~~~  231 (263)
                      .+.++++++++..+.|+|++++.++.+++
T Consensus       226 ~~~r~ege~~a~~i~a~A~~e~~~~~aeA  254 (317)
T TIGR01932       226 RMHRSQGEEKAEEILGKAEYEVRKILSEA  254 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33467777777778888888777777654

HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)

>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated

Probab=87.51  E-value=2.4  Score=33.29  Aligned_cols=56  Identities=11%  Similarity=0.060  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         118 NKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       118 ~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      |.+++.+-..+++.+.+|+.+ ++|..+.+++.+.++..+....-.-.|++|.++++
T Consensus        78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F  134 (137)
T PRK05697         78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY  134 (137)
T ss_pred             HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence            788999999999999999965 67899999999999999973112235888888775

>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []

Probab=84.12  E-value=11  Score=28.54  Aligned_cols=99  Identities=9%  Similarity=-0.009  Sum_probs=60.3

Q ss_pred             cccCCCCcEEEEEEEEEEEee-cchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHHHHH--
Q psy8926          75 PCGTSGGVMIYFDRIEVVNVL-SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQIDENLKTA--  151 (263)
Q Consensus        75 ~~~T~D~~~v~vd~~~~~~~~-d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i~~~i~~~--  151 (263)
                      .+-|+|.-.+.+...-.|+.- |+....+.-+.|....--..+-..+.+.+|..+++.+.++.....-.-|...+.-.  
T Consensus        10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~   89 (118)
T PF11978_consen   10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE   89 (118)
T ss_dssp             EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred             EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence            467899999888766677653 55555555555542211334566788999999999999999752222233333211  


Q ss_pred             ---HHH--HhhcCCCCeEEEEEEeeCCCC
Q psy8926         152 ---LQR--ELNEMAPGLFIQAVRVTKPKI  175 (263)
Q Consensus       152 ---l~~--~l~~~~~GI~V~~v~I~~i~~  175 (263)
                         ++.  .+.  ..|+-|.+|.|+++.|
T Consensus        90 ~~~~r~~~~F~--~N~LvIt~vDvqsvEp  116 (118)
T PF11978_consen   90 NGEVRDGLRFP--ANNLVITSVDVQSVEP  116 (118)
T ss_dssp             -E--SS-EEET--TTTEEEEEEEEEEEEE
T ss_pred             CCCccceeEEc--CCCeEEEEEeeeEecc
Confidence               111  233  6799999999998765

This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.

>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins)

Probab=83.69  E-value=2.5  Score=35.29  Aligned_cols=46  Identities=26%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH--HHHHHHHhhhccccc
Q psy8926         206 DAETERKRAVIEAEKEAQIAKIQYEQKVMEQ--ESKQRVAKIEGKYSL  251 (263)
Q Consensus       206 ~Aeae~~~~ii~A~~~a~a~~i~~~~~~~~~--e~~~~~~~~~~~~~~  251 (263)
                      .|+.++++.+++|+|++++.++.+++.....  ....+.+.+|....+
T Consensus       155 ~A~~~~~a~i~~A~ge~~a~~~~aea~~~~~~~~~~~~~~~~e~~~~~  202 (215)
T cd03403         155 EAEREKRAKIIEAEGERQAAILLAEAAKQAAINPAALQLRELETLEEI  202 (215)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            6777888899999999999999987754332  223344555544333

Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed

Probab=81.22  E-value=5.3  Score=32.90  Aligned_cols=53  Identities=19%  Similarity=0.174  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhhcchHHHHh-hhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCC
Q psy8926         117 FNKVHHELNQFCSIHNLHEVYI-DLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKP  173 (263)
Q Consensus       117 ~~~v~~~lr~v~~~~~~~e~~~-~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i  173 (263)
                      .+.+++++-..+++.+.+|+.+ .++..+.+++.+.++..+.  . | .|.+|.++++
T Consensus       126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~--~-g-~V~~VyFT~F  179 (182)
T PRK08455        126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLI--D-G-FIKNVFFTDF  179 (182)
T ss_pred             hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhc--c-C-ceeEEEeEee
Confidence            3678899999999999999975 4588999999999999987  3 3 5888888775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-07

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 24/78 (30%)

Query: 176 PETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRAVI--EAEKE---------AQI 224
           PE+IRK       E+ +  +        E DA ++        +A+K+          Q+
Sbjct: 84  PESIRK-----WREEQRKRLQ-------ELDAASKVMEQEWREKAKKDLEEWNQRQSEQV 131

Query: 225 AKIQYEQKVMEQE-SKQR 241
            K +   ++ ++   +Q 
Sbjct: 132 EKNKINNRIADKAFYQQP 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
3bk6_A	188	PH stomatin; archaea, trimer, coiled- coil, flotil	99.93
4fvg_A	133	Stomatin; mixed alpha-beta fold, membrane scaffold	99.91
1win_A	143	Flotillin 2; BAND 7 domain, structural genomics, r	99.84
2rpb_A	113	Hypothetical membrane protein; SPFH domain; NMR {P	99.78
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	98.49
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	87.3

>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}

Probab=99.93  E-value=2.2e-25  Score=184.09  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=128.6

Q ss_pred             ccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchH
Q psy8926          55 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLH  134 (263)
Q Consensus        55 ~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~  134 (263)
                      |++++..+|+|+++++++...++|+||++|.+++++.|++.||.++...+.    ++ ...+.+.+++++|+++|+|+++
T Consensus         2 fi~~v~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~dp~~~~~~v~----~~-~~~i~~~~~~~lR~vig~~~l~   76 (188)
T 3bk6_A            2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVK----NY-IMATSQISQTTLRSVIGQAHLD   76 (188)
T ss_dssp             CEEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSS----CH-HHHHHHHHHHHHHHHHHTSCHH
T ss_pred             ceEEEEEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECCHHHHHHHhc----CH-HHHHHHHHHHHHHHHHccCCHH
Confidence            579999999999999998888999999999999999999999887643221    22 4578899999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8926         135 EVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYELMEAEKTKLLISIQHQKVVEKDAETERKRA  214 (263)
Q Consensus       135 e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~aer~~~~~a~~~~~~~~~~Aeae~~~~  214 (263)
                      ++++ +|++|+.++++.+++.+.  +|||+|++|.|++++||+++.+++.+.                  .+|+.+++++
T Consensus        77 ell~-~R~~i~~~i~~~l~~~~~--~~GI~v~~v~I~~i~~p~ev~~a~~~~------------------~~Aere~~A~  135 (188)
T 3bk6_A           77 ELLS-ERDKLNMQLQRIIDEATD--PWGIKVTAVEIKDVELPAGMQKAMARQ------------------AEAERERRAR  135 (188)
T ss_dssp             HHHH-CHHHHHHHHHHHHHHHTG--GGTEEEEEEEEEEEEEETTHHHHHHHH------------------HHHHHHHHHH
T ss_pred             HHHh-hHHHHHHHHHHHHHHHHH--hcCeEEEEEEEEecCCCHHHHHHHHHH------------------HHHHHHHHHH
Confidence            9996 899999999999999999  999999999999999999999997531                  1344555677


Q ss_pred             HHHHhhHHHHHHHHHHH
Q psy8926         215 VIEAEKEAQIAKIQYEQ  231 (263)
Q Consensus       215 ii~A~~~a~a~~i~~~~  231 (263)
                      +++|+|+++++++..++
T Consensus       136 i~~Aege~~a~~~~a~a  152 (188)
T 3bk6_A          136 ITLAEAERQAAEKLREA  152 (188)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            78888888888777654

>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A

Probab=99.91  E-value=7.4e-25  Score=171.10  Aligned_cols=126  Identities=13%  Similarity=0.142  Sum_probs=100.3

Q ss_pred             EEcCccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhh
Q psy8926          51 AMIPFITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSI  130 (263)
Q Consensus        51 f~~P~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~  130 (263)
                      ++.||++++.++|+|+++++.+++.++|+|+..+.+|+++.|++.||.++..-+     .+.+..+.+.+++++|+++|+
T Consensus         3 l~~P~id~v~~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~Dp~~~~~~v-----~~~~~~l~~~~~~~lR~vig~   77 (133)
T 4fvg_A            3 LGSPSTDSAAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANI-----TNADSATRLLAQTTLRNALGT   77 (133)
T ss_dssp             -----------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESCHHHHHHSS-----SCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEEEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEeehHHhHhhh-----hhHHHHHHHHHHHHHHHHhcc
Confidence            678999999999999999999988999999999999999999999998764322     233678999999999999999


Q ss_pred             cchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHH
Q psy8926         131 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYE  184 (263)
Q Consensus       131 ~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~  184 (263)
                      ++++++++ +|++|..++++.+++.++  +|||+|.+|.|++++||+++++|+.
T Consensus        78 ~~ldeil~-~r~~i~~~i~~~l~~~~~--~~GI~V~~V~ikdi~~P~~v~~am~  128 (133)
T 4fvg_A           78 KNLSQILS-DREEIAHHMQSTLDDATD--DWGIKVERVEIKDVKLPVQLQRAMA  128 (133)
T ss_dssp             SCHHHHHH-CHHHHHHHHHHHHHHHHG--GGTEEEEEEEEEEEECCCC------
T ss_pred             ccHHHHHh-hHHHHHHHHHHHHHHHHh--cCCEEEEEEEEEecCCCHHHHHHHH
Confidence            99999996 899999999999999999  9999999999999999999999954

>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1

Probab=99.84  E-value=1.1e-20  Score=149.26  Aligned_cols=128  Identities=9%  Similarity=0.108  Sum_probs=115.2

Q ss_pred             ccceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEee-cchhHHHHHhhc-ccc--hhhHHHHHHHHHHHHHHhhh
Q psy8926          55 FITTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVL-SVSSVYDIVKNY-TAD--YDKALIFNKVHHELNQFCSI  130 (263)
Q Consensus        55 ~i~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~-d~~~v~~~~~~~-~~~--~~~~~l~~~v~~~lr~v~~~  130 (263)
                      |++++.++|+|+++++++++.+.|+|+.++.+|+++.|++. ||.++......| +..  .....+.+.+++++|+++|+
T Consensus         3 ~i~~v~~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~   82 (143)
T 1win_A            3 SGSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT   82 (143)
T ss_dssp             CCCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence            57999999999999999999999999999999999999998 688877766554 332  22678899999999999999


Q ss_pred             cchHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         131 HNLHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       131 ~~~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      ++++|+++ +|++|.+++++.+++.+.  +|||+|.+|.|+|+++|+++.+|+.+
T Consensus        83 ~tldeils-~R~~i~~~v~~~~~~~~~--~~Gi~V~~v~IkdI~~p~~~~~am~~  134 (143)
T 1win_A           83 LTVEQIYQ-DRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             SCHHHHHH-THHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHH--hCCCEEEEEEEEeecChHHHHHHHHH
Confidence            99999996 899999999999999999  99999999999999999999999763

>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}

Probab=99.78  E-value=4.2e-19  Score=134.41  Aligned_cols=110  Identities=17%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             EeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhh
Q psy8926          61 HVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDL  140 (263)
Q Consensus        61 ~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~  140 (263)
                      ++|+|+++++++...+.|+|++++.+++++.|++.||.++..-+.+     ....+.+.+++++|+++|+++++++++ +
T Consensus         4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~dp~~~~~~v~~-----~~~~l~~~~~~~lR~vig~~~l~ei~~-~   77 (113)
T 2rpb_A            4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSD-----FLMAIVKLAQTNLRAIIGEMELDETLS-G   77 (113)
T ss_dssp             CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTH-----HHHHHHHHHHHHHHHHHTSCCTTHHHH-C
T ss_pred             EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECCHHHHHHhcCC-----HHHHHHHHHHHHHHHHHhcCcHHHHHh-C
Confidence            5789999999998899999999999999999999999776432222     256799999999999999999999996 9


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChH
Q psy8926         141 FDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPET  178 (263)
Q Consensus       141 R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~  178 (263)
                      |+++++++++.+++.++  +|||+|.+|.|++++||++
T Consensus        78 R~~i~~~i~~~l~~~~~--~~Gi~v~~v~I~~i~~p~e  113 (113)
T 2rpb_A           78 RDIINARLREELDKITD--RWGVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEECCCEEECCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeEEEEEEEEEecCCCC
Confidence            99999999999999999  9999999999999999974

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=98.49  E-value=1.7e-05  Score=76.50  Aligned_cols=151  Identities=7%  Similarity=0.018  Sum_probs=93.9

Q ss_pred             EEecCCeEEEEEeCC-cccccccCCceeEEcCccceeEEeeee---------EEEe--ecCC------ccccCCCCcEEE
Q psy8926          24 HKIEEGHVGVYFRGG-ALLSTISGPGFHAMIPFITTFRHVQVT---------LQTD--EVKN------VPCGTSGGVMIY   85 (263)
Q Consensus        24 ~~V~~ge~gVv~~~G-k~~~~v~~pGlhf~~P~i~~v~~~d~r---------~q~~--~~~~------~~~~T~D~~~v~   85 (263)
                      |.||.+.+.-++.+. +-.+.+.||-+.+.-|- +.+..++++         +.++  ...+      ..+-|+|...+.
T Consensus       460 ~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd-E~ftvlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhArL~  538 (861)
T 2zuo_A          460 YRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE-EQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQ  538 (861)
T ss_dssp             EECCTTEEEEEECSSSCCEEEECSSCEEECCSS-CEECCEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCCEEE
T ss_pred             EEcCCCeEEEEEecCCCceEEEECCcEEEECCC-ccEEEEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCceEEE
Confidence            678888888777542 22456789998776663 554444431         1111  1111      257899999999


Q ss_pred             EEEEEEEEee--cchhHHHHHhhcccchhhHHHHHHHHHHHHHHhhhcchHHHHhhhHHHH-HHHHHHH-----------
Q psy8926          86 FDRIEVVNVL--SVSSVYDIVKNYTADYDKALIFNKVHHELNQFCSIHNLHEVYIDLFDQI-DENLKTA-----------  151 (263)
Q Consensus        86 vd~~~~~~~~--d~~~v~~~~~~~~~~~~~~~l~~~v~~~lr~v~~~~~~~e~~~~~R~~i-~~~i~~~-----------  151 (263)
                      +...-.|+.-  ||....+.-+.|.....-..+=..+.+.+|..+++.+++++.. +...| ...+...           
T Consensus       539 L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHk-nsa~iir~aVFg~~~~~~~~~~~~  617 (861)
T 2zuo_A          539 LQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHK-NSARIIRMAVFGFEMSEDTGPDGT  617 (861)
T ss_dssp             EEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHH-HHHHHHHHHSSCCC----------
T ss_pred             EEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhh-hHHHHHHHhhcCCCcccccccccc
Confidence            8877778763  6654444444443322123455678899999999999999974 32222 2222211           


Q ss_pred             ----HH--HHhhcCCCCeEEEEEEeeCCCCChH
Q psy8926         152 ----LQ--RELNEMAPGLFIQAVRVTKPKIPET  178 (263)
Q Consensus       152 ----l~--~~l~~~~~GI~V~~v~I~~i~~p~~  178 (263)
                          .+  -.+.  ..|+.|++|.|+.+.|-+.
T Consensus       618 ~~~~~~~~~~F~--~N~lvitsVDvqsvEpvDq  648 (861)
T 2zuo_A          618 LLPKARDQAVFP--QNGLVVSSVDVQSVEPVDQ  648 (861)
T ss_dssp             ---CCCSCEECT--TTCEEEEEEEEEEEEESSH
T ss_pred             cccCcccceEEc--cCCeEEEEEeeeeecccCH
Confidence                00  0134  6799999999999998764

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A

Probab=87.30  E-value=3.5  Score=40.20  Aligned_cols=23  Identities=9%  Similarity=0.289  Sum_probs=14.6

Q ss_pred             CCCeEEEEEEeeCCCCChHHHHH
Q psy8926         160 APGLFIQAVRVTKPKIPETIRKN  182 (263)
Q Consensus       160 ~~GI~V~~v~I~~i~~p~~v~~a  182 (263)
                      -..|+|.++...|..--+.++++
T Consensus       635 itsVDvqsvEpvDqrtrd~LqkS  657 (861)
T 2zuo_A          635 VSSVDVQSVEPVDQRTRDALQRS  657 (861)
T ss_dssp             EEEEEEEEEEESSHHHHHHHHHH
T ss_pred             EEEEeeeeecccCHHHHHHHHHH
Confidence            45666777766666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1wina_	143	Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.75

>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Band 7/SPFH domain
family: Band 7/SPFH domain
domain: Flotillin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=2.8e-18  Score=133.47  Aligned_cols=126  Identities=10%  Similarity=0.120  Sum_probs=109.1

Q ss_pred             ceeEEeeeeEEEeecCCccccCCCCcEEEEEEEEEEEeecchhHH-HHHh-hcccc--hhhHHHHHHHHHHHHHHhhhcc
Q psy8926          57 TTFRHVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNVLSVSSVY-DIVK-NYTAD--YDKALIFNKVHHELNQFCSIHN  132 (263)
Q Consensus        57 ~~v~~~d~r~q~~~~~~~~~~T~D~~~v~vd~~~~~~~~d~~~v~-~~~~-~~~~~--~~~~~l~~~v~~~lr~v~~~~~  132 (263)
                      .++.++|+|+++++++.+.++|+||.++.+++++.|++.||.+.. .... +.+..  ..+..|++.+.+++|+++++|+
T Consensus         5 ~s~~rislr~~~l~~~~q~v~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~lR~vig~~~   84 (143)
T d1wina_           5 SSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT   84 (143)
T ss_dssp             CCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CceeEeeeeEEeecCCCceEECCCCCEEEEEEEEEEEEcCcHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence            456789999999999988899999999999999999998776543 2222 22222  2368899999999999999999


Q ss_pred             hHHHHhhhHHHHHHHHHHHHHHHhhcCCCCeEEEEEEeeCCCCChHHHHHHHH
Q psy8926         133 LHEVYIDLFDQIDENLKTALQRELNEMAPGLFIQAVRVTKPKIPETIRKNYEL  185 (263)
Q Consensus       133 ~~e~~~~~R~~i~~~i~~~l~~~l~~~~~GI~V~~v~I~~i~~p~~v~~a~~~  185 (263)
                      ++++++ +|++|.+++.+.+++.+.  +|||+|+++.|+||++|+++.+|+.+
T Consensus        85 l~el~~-~R~~i~~~v~~~i~~~l~--~~Gi~v~~v~I~dI~~~~~~~~a~~~  134 (143)
T d1wina_          85 VEQIYQ-DRDQFAKLVREVAAPDVG--RMGIEILSFTIKDVYDKVDYLSSLGK  134 (143)
T ss_dssp             HHHHHH-THHHHHHHHHHHHHHHHT--TTTEEEEEEECCCEECTTCHHHHHCC
T ss_pred             HHHHHh-CHHHHHHHHHHHHHHHHH--HhCeEEEEEEEEecCCcHHHHHHHHH
Confidence            999995 899999999999999999  99999999999999999999999753