Psyllid ID: psy8972

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKLNSTTNKCD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccccccccccccccEEEEEcccccEEEEEccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccEEEEEEcccccccccHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHcccHHHHHcccccccEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHcccccccccEEEEEccccccccccHHHccccccccc
Coil and Loop (DISEMBL)
MKLAKFVKINLwknifgkecdklerandderTYYLIEQESLVNKFisvpkdkgslncAIFVAGIVEAVLNncgfkstvTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRrgagkvgrgackgnqqlnynlmakpsghdfciilepplvrprgyceklnsttnkcd
Flexible Loop (DISEMBL)
mklakfvkinlwknifgkecdkleraNDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEpplvrprgyceklnsttnkcd
Low Complexity Region (SEG)
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKLNSTTNKCD
Disordered region (IsUnstruct)
***AKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCE**********
Disordered Region (DISOPRED)
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQI********************CKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKL*S******
Disordered Region (DISEMBL)
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEK*********
Disordered Region (DISPRO)
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKLN*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIMEENIASQWRRGAGKVGRGACKGNQQLNYNLMAKPSGHDFCIILEPPLVRPRGYCEKLNSTTNKCD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q8IUR0	188	Trafficking protein parti	yes	N/A	0.523	0.473	0.662	8e-32
Q2NL13	188	Trafficking protein parti	yes	N/A	0.523	0.473	0.662	9e-32
Q9CQA1	188	Trafficking protein parti	yes	N/A	0.523	0.473	0.662	1e-31
Q5F359	188	Trafficking protein parti	yes	N/A	0.523	0.473	0.651	4e-31
Q54YG5	186	Trafficking protein parti	yes	N/A	0.476	0.435	0.432	1e-14
Q9P7N9	209	Transport protein particl	yes	N/A	0.476	0.387	0.358	2e-12
P15847	184	Trafficking protein parti	yes	N/A	0.535	0.494	0.397	2e-11
Q7KQM2	184	Trafficking protein parti	yes	N/A	0.535	0.494	0.397	2e-11
Q03337	283	Trafficking protein parti	yes	N/A	0.535	0.321	0.297	3e-07
Q8SU25	155	Putative trafficking prot	yes	N/A	0.347	0.380	0.389	1e-05

>sp|Q8IUR0|TPPC5_HUMAN Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1

 Score =  136 bits (342), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct: 88  FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Homo sapiens (taxid: 9606)

>sp|Q2NL13|TPPC5_BOVIN Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1

 Score =  135 bits (341), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct: 88  FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|Q9CQA1|TPPC5_MOUSE Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct: 88  FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|Q5F359|TPPC5_CHICK Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/89 (65%), Positives = 73/89 (82%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +W+ +FGKE DKLE+ANDD++TYY+IE+E LVN FISVP++  +LNCA F AG+V
Sbjct: 88  FVKGPVWRALFGKEADKLEQANDDDKTYYVIEREPLVNTFISVPRENSTLNCAAFTAGLV 147

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL   GF + VTAHWHKGTT MI+F+E
Sbjct: 148 EAVLGASGFPAKVTAHWHKGTTLMIKFEE 176

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Gallus gallus (taxid: 9031)

>sp|Q54YG5|TPPC5_DICDI Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 53/81 (65%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+   +WK++FGK  D LE++ + +  Y + +   +VNKFIS+PK   SLNCA F
Sbjct: 79  LGILSFIHTTVWKSLFGKPADSLEKSTEADDEYMISDNNMVVNKFISLPKHLSSLNCAAF 138

Query: 61  VAGIVEAVLNNCGFKSTVTAH 81
           VAGI+E +L +  F + VTAH
Sbjct: 139 VAGIIEGILCSAEFPARVTAH 159

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7N9|TRS31_SCHPO Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs31 PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 51/81 (62%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + + +++  ++WK +FGK  D LE++ +    Y +++   L+NKFISVPK+   LNC  +
Sbjct: 100 LGILQYIHSSVWKYLFGKHADSLEKSKEASDEYMIVDNNPLLNKFISVPKEMNQLNCCAY 159

Query: 61  VAGIVEAVLNNCGFKSTVTAH 81
           +AGI+E  L++  F    +AH
Sbjct: 160 LAGIIEGFLDSAQFPCKASAH 180

TRAPP plays a key role in the late stages of endoplasmic reticulum to Golgi traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P15847|TPPC5_PLAFA Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 7/98 (7%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+  ++WK +F    D L ++ D    Y + ++  L+NKFI+VPKD G++NCA F
Sbjct: 77  INILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNINCAAF 135

Query: 61  VAGIVEAVLNNCGFKSTVTAH-WHKG-----TTYMIQF 92
            AGIVE  L +  F++ VTAH  H+G     TT  I+F
Sbjct: 136 AAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKF 173

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (taxid: 5833)

>sp|Q7KQM2|TPPC5_PLAF7 Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 7/98 (7%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+  ++WK +F    D L ++ D    Y + ++  L+NKFI+VPKD G++NCA F
Sbjct: 77  INILTFISKHVWKYLFQHSSDLL-KSQDSIYEYMICDKNILLNKFINVPKDYGNINCAAF 135

Query: 61  VAGIVEAVLNNCGFKSTVTAH-WHKG-----TTYMIQF 92
            AGIVE  L +  F++ VTAH  H+G     TT  I+F
Sbjct: 136 AAGIVEGFLCSSEFQADVTAHTIHEGDDNYNTTIFIKF 173

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Plasmodium falciparum (isolate 3D7) (taxid: 36329)

>sp|Q03337|TRS31_YEAST Trafficking protein particle complex subunit 31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRS31 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 10/101 (9%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + + +F+   LW  +F    D L ++++ +  Y +++    + +FI  P +  +++C  F
Sbjct: 177 LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI--PGE--NVSCEYF 232

Query: 61  VAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 95
           V GI++  L N GF   VTAH        + T Y+IQFD Q
Sbjct: 233 VCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273

Component of the TRAPP I, TRAPP II and TRAPP III complexes which act as guanine nucleotide exchange factors (GEF) for YPT1. TRAPP I plays a key role in the late stages of endoplasmic reticulum to Golgi traffic. TRAPP II plays a role in intra-Golgi transport. TRAPP III plays a role in autophagosome formation.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SU25|TRS31_ENCCU Putative trafficking protein particle complex subunit TRS31 OS=Encephalitozoon cuniculi (strain GB-M1) GN=TRS31 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 22  KLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA 80
           ++E+A D +RTY L + + L ++FISVP +   L+    V G+++A L   G+ S VTA
Sbjct: 76  RVEKARDVDRTYLLTDSDGLFSRFISVPDEWNGLSADSIVCGMIQAALMASGYDSEVTA 134

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
443708697	187	hypothetical protein CAPTEDRAFT_195837 [	0.523	0.475	0.786	1e-36
156540774	191	PREDICTED: trafficking protein particle	0.523	0.465	0.775	2e-36
307202732	191	Trafficking protein particle complex sub	0.523	0.465	0.764	2e-36
307175097	191	Trafficking protein particle complex sub	0.523	0.465	0.775	2e-36
332029998	191	Trafficking protein particle complex sub	0.523	0.465	0.764	4e-36
340727793	191	PREDICTED: trafficking protein particle	0.523	0.465	0.741	7e-36
350412173	191	PREDICTED: trafficking protein particle	0.523	0.465	0.741	7e-36
383849557	191	PREDICTED: trafficking protein particle	0.523	0.465	0.741	1e-35
328776484	191	PREDICTED: trafficking protein particle	0.523	0.465	0.730	1e-35
260806076	185	hypothetical protein BRAFLDRAFT_234234 [	0.523	0.481	0.752	2e-35

>gi|443708697|gb|ELU03713.1| hypothetical protein CAPTEDRAFT_195837 [Capitella teleta]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 80/89 (89%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K NLWKN+FGKE DKLE ANDDERTYY+IE+E LVNKFISVPKDKG+LNCA +VAGI+
Sbjct: 87  FIKGNLWKNLFGKEADKLEHANDDERTYYIIEKEPLVNKFISVPKDKGTLNCASYVAGII 146

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVLN C F + VTAHWHKGTT+MI+FDE
Sbjct: 147 EAVLNGCNFPAKVTAHWHKGTTFMIKFDE 175

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156540774|ref|XP_001599248.1| PREDICTED: trafficking protein particle complex subunit 5-like [Nasonia vitripennis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 81/89 (91%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  LWK++FG+E DKLE ANDDERTYY+IE+ESLVNKF+SVPKDKGSLNCA FVAGIV
Sbjct: 91  FIKSTLWKSLFGREADKLEHANDDERTYYIIEKESLVNKFVSVPKDKGSLNCASFVAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL +CGF + VTAHWHKGTTYM++FD+
Sbjct: 151 EAVLCDCGFPAKVTAHWHKGTTYMVKFDD 179

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202732|gb|EFN82023.1| Trafficking protein particle complex subunit 5 [Harpegnathos saltator]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 81/89 (91%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+ESLVNKF+SVPKDKGSLNCA FVAGIV
Sbjct: 91  FIKSTIWKSLFGREADKLEHANDDERTYYIIEKESLVNKFVSVPKDKGSLNCASFVAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL +CGF + VTAHWHKGTTYM++FD+
Sbjct: 151 EAVLYDCGFPAKVTAHWHKGTTYMVKFDD 179

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175097|gb|EFN65239.1| Trafficking protein particle complex subunit 5 [Camponotus floridanus]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 81/89 (91%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +WK++FG+E DKLE ANDDERTYY+IE+ESLVNKF+SVPKDKGSLNCA FVAGIV
Sbjct: 91  FVKSTMWKSLFGREADKLEHANDDERTYYIIEKESLVNKFVSVPKDKGSLNCASFVAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL +CGF + VTAHWHKGTTYM++FD+
Sbjct: 151 EAVLCDCGFPAKVTAHWHKGTTYMVKFDD 179

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029998|gb|EGI69823.1| Trafficking protein particle complex subunit 5 [Acromyrmex echinatior]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 68/89 (76%), Positives = 81/89 (91%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+ESLVNKF+SVPKDKGSLNCA FVAGIV
Sbjct: 91  FIKSTVWKSLFGREADKLEHANDDERTYYIIEKESLVNKFVSVPKDKGSLNCASFVAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVL +CGF + VTAHWHKGTTYM++FD+
Sbjct: 151 EAVLCDCGFPAKVTAHWHKGTTYMVKFDD 179

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727793|ref|XP_003402220.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus terrestris]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 82/89 (92%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+E+LVNKFISVPKDKGSLNCA F+AGIV
Sbjct: 91  FIKSTVWKSLFGREADKLEHANDDERTYYIIEKEALVNKFISVPKDKGSLNCASFIAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L +CGF++ VTAHWHKGTTYM++FD+
Sbjct: 151 EAILCDCGFQAKVTAHWHKGTTYMVKFDD 179

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412173|ref|XP_003489563.1| PREDICTED: trafficking protein particle complex subunit 5-like [Bombus impatiens]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 82/89 (92%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+E+LVNKFISVPKDKGSLNCA F+AGIV
Sbjct: 91  FIKSTVWKSLFGREADKLEHANDDERTYYIIEKEALVNKFISVPKDKGSLNCASFIAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L +CGF++ VTAHWHKGTTYM++FD+
Sbjct: 151 EAILCDCGFQAKVTAHWHKGTTYMVKFDD 179

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849557|ref|XP_003700411.1| PREDICTED: trafficking protein particle complex subunit 5-like [Megachile rotundata]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 81/89 (91%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+E+LVNKFISVPKDKGSLNCA F+AGIV
Sbjct: 91  FIKSTVWKSLFGREADKLEHANDDERTYYIIEKEALVNKFISVPKDKGSLNCASFIAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L +CGF + VTAHWHKGTTYM++FD+
Sbjct: 151 EAILCDCGFTAKVTAHWHKGTTYMVKFDD 179

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776484|ref|XP_395045.2| PREDICTED: trafficking protein particle complex subunit 5-like [Apis mellifera]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 82/89 (92%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K  +WK++FG+E DKLE ANDDERTYY+IE+E++VNKFISVPKDKGSLNCA F+AGIV
Sbjct: 91  FIKSTVWKSLFGREADKLEHANDDERTYYIIEKEAIVNKFISVPKDKGSLNCASFIAGIV 150

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L +CGF++ VTAHWHKGTTYM++FD+
Sbjct: 151 EAILCDCGFQAKVTAHWHKGTTYMVKFDD 179

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260806076|ref|XP_002597911.1| hypothetical protein BRAFLDRAFT_234234 [Branchiostoma floridae] gi|229283180|gb|EEN53923.1| hypothetical protein BRAFLDRAFT_234234 [Branchiostoma floridae]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 78/89 (87%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           FVK  +WK +FGKE DKLE ANDD++TYY++E++ LVNKFISVPKDKGSLNCA F AGIV
Sbjct: 85  FVKTTVWKTLFGKEADKLEHANDDDKTYYIVEKDPLVNKFISVPKDKGSLNCAAFTAGIV 144

Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EAVLN CGF + VTAHWH+GTTYMI+FDE
Sbjct: 145 EAVLNGCGFPAKVTAHWHRGTTYMIKFDE 173

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
ZFIN|ZDB-GENE-040718-185	188	trappc5 "trafficking protein p	0.552	0.5	0.606	8.8e-31
WB|WBGene00013259	185	Y57A10A.16 [Caenorhabditis ele	0.523	0.481	0.662	3.8e-30
UNIPROTKB|Q9NA81	185	Y57A10A.16 "Protein Y57A10A.16	0.523	0.481	0.662	3.8e-30
UNIPROTKB|F1MSD6	188	TRAPPC5 "Trafficking protein p	0.523	0.473	0.662	3.4e-29
UNIPROTKB|Q2NL13	188	TRAPPC5 "Trafficking protein p	0.523	0.473	0.662	3.4e-29
UNIPROTKB|E2RBU4	188	TRAPPC5 "Uncharacterized prote	0.523	0.473	0.662	3.4e-29
UNIPROTKB|Q8IUR0	188	TRAPPC5 "Trafficking protein p	0.523	0.473	0.662	3.4e-29
UNIPROTKB|F1SCJ1	188	TRAPPC5 "Uncharacterized prote	0.523	0.473	0.662	3.4e-29
MGI|MGI:1913932	188	Trappc5 "trafficking protein p	0.523	0.473	0.662	3.4e-29
RGD|1563971	188	Trappc5 "trafficking protein p	0.523	0.473	0.662	3.4e-29

ZFIN|ZDB-GENE-040718-185 trappc5 "trafficking protein particle complex 5" [Danio rerio (taxid:7955)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 57/94 (60%), Positives = 76/94 (80%)

Query:     1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
             + +  F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F
Sbjct:    83 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 142

Query:    61 VAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
               GIVEA+L + GF + VT HWHKGTT MI+FDE
Sbjct:   143 TGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDE 176

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00013259 Y57A10A.16 [Caenorhabditis elegans (taxid:6239)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 59/89 (66%), Positives = 71/89 (79%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             F+K  +WKN+FGKE DKLER+NDD  TY LIE++ +VN +ISVP+DKG LNCA F AGIV
Sbjct:    83 FIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYISVPRDKGVLNCAAFAAGIV 142

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EA+L +  FK  VTAHWH GT Y+IQFDE
Sbjct:   143 EAILESASFKCKVTAHWHNGTAYVIQFDE 171

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q9NA81 Y57A10A.16 "Protein Y57A10A.16" [Caenorhabditis elegans (taxid:6239)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 59/89 (66%), Positives = 71/89 (79%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             F+K  +WKN+FGKE DKLER+NDD  TY LIE++ +VN +ISVP+DKG LNCA F AGIV
Sbjct:    83 FIKSTVWKNLFGKEADKLERSNDDHCTYLLIEKDPMVNTYISVPRDKGVLNCAAFAAGIV 142

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EA+L +  FK  VTAHWH GT Y+IQFDE
Sbjct:   143 EAILESASFKCKVTAHWHNGTAYVIQFDE 171

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MSD6 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q2NL13 TRAPPC5 "Trafficking protein particle complex subunit 5" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|E2RBU4 TRAPPC5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINAYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

UNIPROTKB|Q8IUR0 TRAPPC5 "Trafficking protein particle complex subunit 5" [Homo sapiens (taxid:9606)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|F1SCJ1 TRAPPC5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA

MGI|MGI:1913932 Trappc5 "trafficking protein particle complex 5" [Mus musculus (taxid:10090)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030008 "TRAPP complex" evidence=IDA

RGD|1563971 Trappc5 "trafficking protein particle complex 5" [Rattus norvegicus (taxid:10116)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 59/89 (66%), Positives = 73/89 (82%)

Query:     6 FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
             FVK  +WK +FGKE DKLE+ANDD RT+Y+IE+E L+N +ISVPK+  +LNCA F AGIV
Sbjct:    88 FVKGAVWKALFGKEADKLEQANDDARTFYIIEREPLINTYISVPKENSTLNCASFTAGIV 147

Query:    66 EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
             EAVL + GF + VTAHWHKGTT MI+F+E
Sbjct:   148 EAVLTHSGFPAKVTAHWHKGTTLMIKFEE 176

GO:0030008 "TRAPP complex" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2NL13	TPPC5_BOVIN	No assigned EC number	0.6629	0.5235	0.4734	yes	N/A
Q8IUR0	TPPC5_HUMAN	No assigned EC number	0.6629	0.5235	0.4734	yes	N/A
Q9CQA1	TPPC5_MOUSE	No assigned EC number	0.6629	0.5235	0.4734	yes	N/A
Q5F359	TPPC5_CHICK	No assigned EC number	0.6516	0.5235	0.4734	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
pfam04051	148	pfam04051, TRAPP, Transport protein particle (TRAP	1e-29
COG5128	208	COG5128, COG5128, Transport protein particle (TRAP	2e-20
PTZ00391	168	PTZ00391, PTZ00391, transport protein particle com	3e-20

>gnl|CDD|217862 pfam04051, TRAPP, Transport protein particle (TRAPP) component

 Score =  105 bits (265), Expect = 1e-29
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 6/96 (6%)

Query: 4   AKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAG 63
            KF+  +LWK +FGK+ D LE ++D E  Y LI+ ++ +++F+ +P D   LN   F+ G
Sbjct: 55  LKFICKDLWKMLFGKQADVLETSHDGE--YVLIDNDNPLSQFVELPPDYSGLNYLNFLCG 112

Query: 64  IVEAVLNNCGFKSTVTAH----WHKGTTYMIQFDEQ 95
           I+   L++ GF + VTAH       GT + I+F++ 
Sbjct: 113 IIRGALSSLGFPAKVTAHSDPLRGPGTVFEIKFEKS 148

TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment. TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterized TRAPP proteins and has a dimeric structure with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi. Length = 148

>gnl|CDD|227457 COG5128, COG5128, Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

 Score = 83.8 bits (207), Expect = 2e-20
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 6/99 (6%)

Query: 3   LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVA 62
           + + +  +LW  +FG   D+LE++ + +R Y +++ + L+++FISVP +   L+C   V 
Sbjct: 101 ILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVC 160

Query: 63  GIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 95
           GI++  L   GF   VTAH          T ++I+ D+ 
Sbjct: 161 GIIQGFLMAAGFPCEVTAHPEPSENLPNRTVFLIRIDDL 199

Length = 208

>gnl|CDD|240398 PTZ00391, PTZ00391, transport protein particle component (TRAPP) superfamily; Provisional

 Score = 81.8 bits (202), Expect = 3e-20
 Identities = 39/94 (41%), Positives = 57/94 (60%), Gaps = 7/94 (7%)

Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+  ++WK +FG   D L ++ D +  Y + ++  L+NKFISVPKD G +NCA F AGIV
Sbjct: 65  FISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIV 123

Query: 66  EAVLNNCGFKSTVTAHW------HKGTTYMIQFD 93
           E +L +  F + VTAH       +  TT +I+F 
Sbjct: 124 EGILCSAEFPANVTAHTVEDTPKNFSTTILIKFY 157

Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PTZ00391	168	transport protein particle component (TRAPP) super	100.0
KOG3315|consensus	191		100.0
COG5128	208	Transport protein particle (TRAPP) complex subunit	100.0
PF04051	152	TRAPP: Transport protein particle (TRAPP) componen	100.0
KOG3316|consensus	163		99.97
KOG3330|consensus	183		96.74

>PTZ00391 transport protein particle component (TRAPP) superfamily; Provisional

Probab=100.00  E-value=6e-45  Score=295.34  Aligned_cols=100  Identities=39%  Similarity=0.689  Sum_probs=95.9

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      |++|||||++||++|||||||+| |++||+|+|||+||+|++++|||+|+++++++|+||+||||||+|+++||||+|||
T Consensus        60 L~iLkFI~~~~W~~lFgk~aD~L-kt~d~~~~Y~i~Dn~~~~~~~iS~p~~~~~~~~~aF~~GII~G~L~~~Gf~a~VTA  138 (168)
T PTZ00391         60 LSILTFISKHVWKYLFGHSSDLL-KSQDSDDEYMINDKNLLLNKFISVPKDLGHINCAAFAAGIVEGILCSAEFPANVTA  138 (168)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhh-cccCCCCeEEEEeCchhheeeeeccccccccchhhhhHHHHHHHHhhCCCCcEEEE
Confidence            58999999999999999999999 56679999999999999999999999999999999999999999999999999999


Q ss_pred             Ee------CCCeEEEEEcCcchhchhh
Q psy8972          81 HW------HKGTTYMIQFDEQEGKFTA  101 (170)
Q Consensus        81 h~------~p~TtFlIKF~~~V~~re~  101 (170)
                      |+      +.+|||+|||+++|++||+
T Consensus       139 ~~~~~~~~~~~t~~likf~~~v~~Re~  165 (168)
T PTZ00391        139 HTVEDTPKNFSTTILIKFYPEVIEREK  165 (168)
T ss_pred             EeccCCCCCCceEEEEEecHHHHHHHh
Confidence            98      5699999999999999986

>KOG3315|consensus

Probab=100.00  E-value=2.7e-41  Score=278.04  Aligned_cols=102  Identities=59%  Similarity=1.041  Sum_probs=99.3

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      |+||+||+.++||+||||.||.|||++++++||||+|++|++|+|||||+|++.+||+||+||||||+|+++||||+|||
T Consensus        86 lgiL~fi~~tvwk~Lfgk~ad~LEka~d~~~tYmiid~~pl~n~fISVPke~~~lnc~~fvaGIiea~L~~agfpckVTA  165 (191)
T KOG3315|consen   86 LGILQFIHSTVWKYLFGKEADKLEKANDDDRTYMIIDKEPLVNTFISVPKENGTLNCAAFVAGIIEAVLDNAGFPCKVTA  165 (191)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHhcccccceEEEEcCcchhhhceecccccCcccHHHHHHHHHHHHHHhCCCCCceee
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee-CCCeEEEEEcCcchhchhhh
Q psy8972          81 HW-HKGTTYMIQFDEQEGKFTAL  102 (170)
Q Consensus        81 h~-~p~TtFlIKF~~~V~~re~~  102 (170)
                      || |.+|+++|||+++|++||++
T Consensus       166 h~~P~gt~~~IkF~~~Viare~~  188 (191)
T KOG3315|consen  166 HWHPEGTTYLIKFDESVIAREGL  188 (191)
T ss_pred             eecCCCCeEEEEecHHHHhhhhh
Confidence            99 57999999999999999975

>COG5128 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=3.9e-35  Score=242.66  Aligned_cols=102  Identities=29%  Similarity=0.632  Sum_probs=98.8

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      |++|+|||.++|++|||+.+|.|+||.+.++||||+||+|++++|||||+++.+++|.+|+||||+|+|.++||||+|||
T Consensus        99 l~iLq~ih~~lwsylf~~~~d~leKs~e~d~eYmivDn~plls~FIsvP~E~n~lsc~~~vcGiI~gfL~~agfpc~vtA  178 (208)
T COG5128          99 LTILQRIHFDLWSYLFGDSDDRLEKSREVDREYMIVDNDPLLSRFISVPDEWNGLSCDSIVCGIIQGFLMAAGFPCEVTA  178 (208)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhhhcCceeEEecCchHHHHHhcCcchhcCcchHHHHHHHHHHHHHhcCCCCccee
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee------CCCeEEEEEcCcchhchhhh
Q psy8972          81 HW------HKGTTYMIQFDEQEGKFTAL  102 (170)
Q Consensus        81 h~------~p~TtFlIKF~~~V~~re~~  102 (170)
                      |.      +.+|+|+|+|++.|+.||.+
T Consensus       179 h~~P~~~~p~Rtv~lI~~d~~vi~re~v  206 (208)
T COG5128         179 HPEPSENLPNRTVFLIRIDDLVIAREEV  206 (208)
T ss_pred             ccCcccCCCcceEEEEEecHHHHhhhhh
Confidence            97      66999999999999999975

>PF04051 TRAPP: Transport protein particle (TRAPP) component; InterPro: IPR007194 TRAPP plays a key role in the targeting and/or fusion of ER-to-Golgi transport vesicles with their acceptor compartment

Probab=100.00  E-value=4.9e-34  Score=223.02  Aligned_cols=92  Identities=32%  Similarity=0.651  Sum_probs=84.9

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCC-CceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEe
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDD-ERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT   79 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh-~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VT   79 (170)
                      +|+|+|||+++|+++||||||+|+  ||| +|+|||+|++|.+++|+|+|++++.++|++|+||||||||+++||+|.||
T Consensus        55 ~~~~~fI~k~~W~~~fgk~~d~l~--~n~~~~~y~i~d~~~~~~~~v~~p~~~~~l~~~~f~~GiIrGaL~~lg~~~~Vt  132 (152)
T PF04051_consen   55 LDILKFICKDFWKMLFGKQADNLK--TNHDRGEYVITDNDFPLNQFVSLPEEYEGLNYLAFPCGIIRGALESLGFPAEVT  132 (152)
T ss_dssp             HHHHHHHHHHHHHHHHSS--SEEE--EETTSTEEEEEEST-CCCTTSTTCGCGTTSHTTHHHHHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccc--ccCCCCeEEEecCccchhhhhccchhhccCchhhhHHHHHHHHHHHCCCceEEE
Confidence            479999999999999999999999  788 99999999999999999999988899999999999999999999999999


Q ss_pred             EEe----CCCeEEEEEcCc
Q psy8972          80 AHW----HKGTTYMIQFDE   94 (170)
Q Consensus        80 Ah~----~p~TtFlIKF~~   94 (170)
                      ||.    +|+|+|+|||++
T Consensus       133 a~~~~~~~~~~~f~Ik~~~  151 (152)
T PF04051_consen  133 AESDPLNGPQTTFQIKFEK  151 (152)
T ss_dssp             EEECCCGTTEEEEEEEEEH
T ss_pred             EEEeccCCCCeEEEEEEec
Confidence            998    478999999986

TRAPP is a large multimeric protein that contains at least 10 subunits. This family contains many TRAPP family proteins. The Bet3 subunit is one of the better characterised TRAPP proteins and has a dimeric structure [] with hydrophobic channels. The channel entrances are located on a putative membrane-interacting surface that is distinctively flat, wide and decorated with positively charged residues. Bet3 is proposed to localise TRAPP to the Golgi [].; PDB: 2J3R_A 1WC9_A 2J3T_A 2PWN_A 2J3W_E 1WC8_A 3CUE_N 2C0J_B 3KXC_A 2CFH_A ....

>KOG3316|consensus

Probab=99.97  E-value=2e-32  Score=221.69  Aligned_cols=92  Identities=24%  Similarity=0.368  Sum_probs=85.4

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV   78 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V   78 (170)
                      ||+|||||+|||+.+|+||+||||  |||+|+|||+||.+.+.+.+|..+++.  ...++|||||||||+|++||++|.|
T Consensus        67 LeimKFiCkDfW~~VF~KQiDNLr--TNhrG~yVlqD~~Fr~l~~~s~G~~~~~~a~~flaFpcGliRGvLs~LGi~siV  144 (163)
T KOG3316|consen   67 LEIMKFICKDFWSIVFKKQIDNLR--TNHRGTYVLQDNKFRWLTSMSPGTQYLEEAPKFLAFPCGLIRGVLSNLGISSIV  144 (163)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcc--ccCCceEEEecCceeeeeecCchhHHHHhcCCeEEeehhHHHHHHhhCCCceEE
Confidence            689999999999999999999999  999999999999999999998666553  4578999999999999999999999


Q ss_pred             eEEe--CCCeEEEEEcCc
Q psy8972          79 TAHW--HKGTTYMIQFDE   94 (170)
Q Consensus        79 TAh~--~p~TtFlIKF~~   94 (170)
                      ||++  .|.|.|+|++.+
T Consensus       145 tA~v~slPtckFhV~v~~  162 (163)
T KOG3316|consen  145 TASVSSLPTCKFHVQVQP  162 (163)
T ss_pred             eeecCCCCceEEEEEecC
Confidence            9999  899999999875

>KOG3330|consensus

Probab=96.74  E-value=0.00082  Score=56.13  Aligned_cols=67  Identities=24%  Similarity=0.355  Sum_probs=53.2

Q ss_pred             CCCceEEEE-cCCcceeeccccCCC-CCCccccchhHHHHHHHHhcCCCceEEeEEe-----CCCeEEEEEcCcc
Q psy8972          28 DDERTYYLI-EQESLVNKFISVPKD-KGSLNCAIFVAGIVEAVLNNCGFKSTVTAHW-----HKGTTYMIQFDEQ   95 (170)
Q Consensus        28 nh~geYmL~-Dn~pl~~kfISvPkd-~~~lncaAF~aGIIeGaL~slGF~a~VTAh~-----~p~TtFlIKF~~~   95 (170)
                      .+.++|.|+ |++|+ ..|+..|++ .+++.|.-..||+|||+|...-+.+.|+.--     ...|-+.|+|.+-
T Consensus       100 s~~~efsliLe~NPL-~efVe~p~d~~ssL~YsnlLcGviRGALEmV~m~~dv~f~~d~lrGd~~tEIrv~f~r~  173 (183)
T KOG3330|consen  100 SDGNEFSLILEDNPL-VEFVEEPPDARSSLWYSNLLCGVIRGALEMVQMKVDVVFLSDTLRGDSVTEIRVRFLRI  173 (183)
T ss_pred             CCCCEEEEEecCCcH-HHHHHhCHHHhhhHHHHHHHHHHHHhHHHHHhhhheeeeeeehhcCCCceeeeeeHHHH
Confidence            456889887 77786 567766655 4578899999999999999999999997654     4459999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
2j3w_B	188	The Crystal Structure Of The Bet3-Trs31-Sedlin Comp		2e-33
2j3r_B	157	The Crystal Structure Of The Bet3-Trs31 Heterodimer		3e-33
3cue_B	283	Crystal Structure Of A Trapp Subassembly Activating		3e-08

>pdb|2J3W|B Chain B, The Crystal Structure Of The Bet3-Trs31-Sedlin Complex. Length = 188

Iteration: 1
 Score =  138 bits (347), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 74/89 (83%)
Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F  GIV
Sbjct: 88  FIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIV 147
Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 148 EAILTHSGFPAKVTVHWHKGTTLMIKFDE 176

>pdb|2J3R|B Chain B, The Crystal Structure Of The Bet3-Trs31 Heterodimer Length = 157

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 74/89 (83%)
Query: 6   FVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIV 65
           F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F  GIV
Sbjct: 69  FIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIV 128
Query: 66  EAVLNNCGFKSTVTAHWHKGTTYMIQFDE 94
           EA+L + GF + VT HWHKGTT MI+FDE
Sbjct: 129 EAILTHSGFPAKVTVHWHKGTTLMIKFDE 157

>pdb|3CUE|B Chain B, Crystal Structure Of A Trapp Subassembly Activating The Rab Ypt1p Length = 283

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + + +F+   LW  +F    D L ++++ +  Y +++    + +FI  P +  +++C  F
Sbjct: 177 LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFI--PGE--NVSCEYF 232
Query: 61  VAGIVEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 95
           V GI++  L N GF   VTAH        + T Y+IQFD Q
Sbjct: 233 VCGIIKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	6e-38
3cue_B	283	Transport protein particle 31 kDa subunit; membran	1e-35
2bjn_A	160	TPC6, trafficking protein particle complex subunit	2e-23
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	1e-20
1sz7_A	200	BET3 homolog, trafficking protein particle complex	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B* Length = 188

 Score =  127 bits (321), Expect = 6e-38
 Identities = 57/95 (60%), Positives = 76/95 (80%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F
Sbjct: 83  LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 142

Query: 61  VAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 95
             GIVEA+L + GF + VT HWHKGTT MI+FDE 
Sbjct: 143 TGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDES 177

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae} Length = 283

 Score =  124 bits (311), Expect = 1e-35
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)

Query: 5   KFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGI 64
           +F+   LW  +F    D L ++++ +  Y +++    + +FI       +++C  FV GI
Sbjct: 181 QFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGI 236

Query: 65  VEAVLNNCGFKSTVTAH------WHKGTTYMIQFDEQ 95
           ++  L N GF   VTAH        + T Y+IQFD Q
Sbjct: 237 IKGFLFNAGFPCGVTAHRMPQGGHSQRTVYLIQFDRQ 273

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C* Length = 160

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 3   LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAI--F 60
           + KF+  + W  +F K+ D L   +     Y L + +  +   +S  K           F
Sbjct: 66  IMKFICKDFWTTVFKKQIDNLRTNHQG--IYVLQDNKFRLLTQMSAGKQYLEHASKYLAF 123

Query: 61  VAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 94
             G++   L+N G KS VTA         + +   +
Sbjct: 124 TCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 159

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B* Length = 160

 Score = 82.2 bits (203), Expect = 1e-20
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 6/98 (6%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKD--KGSLNCA 58
           + + KF+  +LW  +F K+ D L   +    TY L +    +   ++      + +    
Sbjct: 64  LDVLKFLCKDLWVAVFQKQMDSLRTNHQG--TYVLQDNSFPLLLPMASGLQYLEEAPKFL 121

Query: 59  IFVAGIVEAVLNNCGFKSTVTAHWHK--GTTYMIQFDE 94
            F  G++   L   G +S VTA         + +   +
Sbjct: 122 AFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 159

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A* Length = 200

 Score = 80.4 bits (198), Expect = 1e-19
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 6/98 (6%)

Query: 3   LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVA 62
            A  +    +K   G        +   +    ++E   LV+ F+ +P +  SL  +  + 
Sbjct: 83  TADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLC 141

Query: 63  GIVEAVLNNCGFKSTVTAH-----WHKGTTYMIQFDEQ 95
           G++   L                     T   ++F  +
Sbjct: 142 GVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRR 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 7e-04
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 23/139 (16%)

Query: 3   LAKFVK-------INLWKNIFGK-ECDK-LERANDDERTYYLI-----EQESLVNKFI-- 46
              FV         ++ K+I  K E D  +   +    T  L      +QE +V KF+  
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 47  SVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQEGKFTALQIM- 105
            +  +   L   I      +  +    +       ++    +      +   +  L+   
Sbjct: 86  VLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 106 -----EENIASQWRRGAGK 119
                 +N+      G+GK
Sbjct: 145 LELRPAKNVLIDGVLGSGK 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2j3w_B	188	ZGC 92866, trafficking protein particle complex pr	100.0
2c0j_B	160	R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens	100.0
2bjn_A	160	TPC6, trafficking protein particle complex subunit	100.0
3cue_B	283	Transport protein particle 31 kDa subunit; membran	100.0
1sz7_A	200	BET3 homolog, trafficking protein particle complex	99.97
3cue_D	193	Transport protein particle 22 kDa subunit; membran	99.97

>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*

Probab=100.00  E-value=1.8e-40  Score=270.49  Aligned_cols=102  Identities=56%  Similarity=1.017  Sum_probs=99.2

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      +|+|+|||+++||.+||||+|+|++||||+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+|||
T Consensus        83 ld~l~fI~k~~Wk~lfgk~~d~L~~st~~~~~y~i~D~npl~~~fvs~p~~~~~l~y~~f~cGiIrGaL~~~g~~~~Vta  162 (188)
T 2j3w_B           83 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTV  162 (188)
T ss_dssp             HHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCccccccccCCCCEEEEEcCCcceeeeeecCccccCchhHHHHHHHHHHHHHHCCCceEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEcCcchhchhhh
Q psy8972          81 HWHKGTTYMIQFDEQEGKFTAL  102 (170)
Q Consensus        81 h~~p~TtFlIKF~~~V~~re~~  102 (170)
                      |++|+|+|+|||+++|++||++
T Consensus       163 ~~~~~t~f~Ikf~~~v~~re~~  184 (188)
T 2j3w_B          163 HWHKGTTLMIKFDESVIARDKA  184 (188)
T ss_dssp             EESSSEEEEEEECHHHHHHHHH
T ss_pred             EeCCCEEEEEEecHHHHHHHHh
Confidence            9999999999999999888875

>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*

Probab=100.00  E-value=4e-36  Score=238.70  Aligned_cols=92  Identities=21%  Similarity=0.317  Sum_probs=85.2

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV   78 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V   78 (170)
                      +|+|+||||++||.+||||||+|+  |||+|+|||+||+|.+++|+|+|+++.  .++|++|+||||||+|+++||+|+|
T Consensus        64 ld~l~fI~k~~Wk~~fgk~~d~L~--t~~~~~y~l~dn~~~l~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~lg~~~~V  141 (160)
T 2c0j_B           64 LDVLKFLCKDLWVAVFQKQMDSLR--TNHQGTYVLQDNSFPLLLPMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVV  141 (160)
T ss_dssp             HHHHHHHHTHHHHHHHSSCCSEEE--ECSSSEEEEEETTCGGGC----CGGGTTTGGGGTHHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHHHHHhCCcCccce--eCCCCEEEEECCCCcHHHHcCCCHHHhhhcchhHHHHHHHHHHHHHHCCCceEE
Confidence            579999999999999999999999  899999999999999999999999998  8999999999999999999999999


Q ss_pred             eEEe--CCCeEEEEEcCc
Q psy8972          79 TAHW--HKGTTYMIQFDE   94 (170)
Q Consensus        79 TAh~--~p~TtFlIKF~~   94 (170)
                      |||+  .|+|+|+|||.+
T Consensus       142 ta~~~~~p~~~f~i~~~~  159 (160)
T 2c0j_B          142 TASVAALPVCKFQVVIPK  159 (160)
T ss_dssp             EEEESSTTCEEEEEECCC
T ss_pred             EEeecCCCceEEEEEeec
Confidence            9999  899999999976

>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*

Probab=100.00  E-value=7.4e-35  Score=231.13  Aligned_cols=92  Identities=23%  Similarity=0.408  Sum_probs=81.6

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCC--CccccchhHHHHHHHHhcCCCceEE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKG--SLNCAIFVAGIVEAVLNNCGFKSTV   78 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~--~lncaAF~aGIIeGaL~slGF~a~V   78 (170)
                      +|+|+|||+++|+.+||||||+|+  |||+|+|||+||+|.+++|+|+|+++.  .++|++|+||||||+|+++||+|+|
T Consensus        64 ld~lkfI~k~~Wk~~fgk~~d~L~--t~~~~~y~l~d~~~~~~~~vs~p~~~~~~~l~y~~f~cGiIrGaL~~~g~~~~V  141 (160)
T 2bjn_A           64 LDIMKFICKDFWTTVFKKQIDNLR--TNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIV  141 (160)
T ss_dssp             HHHHHHHHTHHHHHHHSSCCSEEE--EEETTEEEEEESSCGGGTTC-------CTTGGGTHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccc--cCCCCEEEEEcCCchHHhhcCCCHHHHHhcchhHHHHHHHHHHHHHHCCCceEE
Confidence            479999999999999999999998  899999999999999999999999985  7999999999999999999999999


Q ss_pred             eEEe--CCCeEEEEEcCc
Q psy8972          79 TAHW--HKGTTYMIQFDE   94 (170)
Q Consensus        79 TAh~--~p~TtFlIKF~~   94 (170)
                      |||+  .|+|+|+||+.+
T Consensus       142 ta~~~~~p~~~F~i~~~~  159 (160)
T 2bjn_A          142 TAEVSSMPACKFQVMIQK  159 (160)
T ss_dssp             EEEESSTTCEEEEEEEC-
T ss_pred             EEEecCCCceEEEEEecc
Confidence            9999  799999999875

>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.3e-35  Score=252.30  Aligned_cols=99  Identities=30%  Similarity=0.614  Sum_probs=92.5

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      +|+|+|||+++||.+||||||+|+|.++++|+|||+||+|++++|+|++    +++|++|+||||||||+++||+|+|||
T Consensus       177 ldilkFIcK~~Wk~lFgKqaD~Lektn~~~geYvL~Dn~~pLt~fVs~~----~L~y~af~cGIIRGAL~~lGf~a~VTA  252 (283)
T 3cue_B          177 LDILQFIHGTLWSYLFNHVSDDLVKSSERDNEYMIVDNFPTLTQFIPGE----NVSCEYFVCGIIKGFLFNAGFPCGVTA  252 (283)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCSEEEECSSCSSCEEEEESSCSSSCSSCTT----CCHHHHHHHHHHHHHHHHHTSCCCCEE
T ss_pred             HHHHHHHHHHHHHHHhCCCcchhccccCCCCEEEEEeCchHHHhhhccC----CcchhhhHHHHHHHHHHhCCCceEEEE
Confidence            5899999999999999999999987777789999999999999999973    689999999999999999999999999


Q ss_pred             Ee------CCCeEEEEEcCcchhchhhhh
Q psy8972          81 HW------HKGTTYMIQFDEQEGKFTALQ  103 (170)
Q Consensus        81 h~------~p~TtFlIKF~~~V~~re~~~  103 (170)
                      |+      +++|+|+|||+++|++||+|.
T Consensus       253 ~~~p~~~~~~~T~~~IkF~~~v~~Re~~r  281 (283)
T 3cue_B          253 HRMPQGGHSQRTVYLIQFDRQVLDREGLR  281 (283)
T ss_dssp             ECCCCSSCTTCEEEECCCCHHHHHHHHHC
T ss_pred             EEcccccCCCceEEEEEecHHHHhhhhhh
Confidence            98      358999999999999999985

>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*

Probab=99.97  E-value=3.9e-32  Score=223.96  Aligned_cols=94  Identities=18%  Similarity=0.293  Sum_probs=87.4

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEE-EcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEe
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVT   79 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL-~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VT   79 (170)
                      +|+|+|||+++||.+||||+|+|++ |||+++||| +|++|+.+ |+|+|++++.++|++|+||||||||+++||+  ||
T Consensus        81 le~l~fI~k~~Wk~lFgk~ad~L~~-t~~~~~Y~L~~D~nPL~~-fvslP~~~~~l~y~~f~cGIIrGaL~~lg~~--Vt  156 (200)
T 1sz7_A           81 RETADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVD-FVELPDNHSSLIYSNLLCGVLRGALEMVQMA--VE  156 (200)
T ss_dssp             HHHHHHHHHTHHHHHHSCCCEEECC-CTTSCEEEEEESSCTTCT-TCCCCGGGTTCCTTTHHHHHHHHHHHTTTEE--EE
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccee-cCCCCEEEEEECCcHHHH-hccCCccccCCchhhhHHHHHHHHHHhCCCE--EE
Confidence            4799999999999999999999997 899999999 89999988 9999999999999999999999999999999  88


Q ss_pred             EEe-------CCCeEEEEEcCcchhc
Q psy8972          80 AHW-------HKGTTYMIQFDEQEGK   98 (170)
Q Consensus        80 Ah~-------~p~TtFlIKF~~~V~~   98 (170)
                      ||+       .++|+|+|||+++|.+
T Consensus       157 a~~~~d~l~g~~~t~~~Ikf~~~v~~  182 (200)
T 1sz7_A          157 AKFVQDTLKGDGVTEIRMRFIRRIED  182 (200)
T ss_dssp             EEEEECGGGTCSSEEEEEEEEEEC--
T ss_pred             EEEEecccCCCCCEEEEEEEhhhhhh
Confidence            887       3689999999999843

>3cue_D Transport protein particle 22 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6.7e-32  Score=220.79  Aligned_cols=94  Identities=14%  Similarity=0.284  Sum_probs=87.4

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEE-EcCCcceeeccccCCCC-CCccccchhHHHHHHHHhcCCCceEE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYL-IEQESLVNKFISVPKDK-GSLNCAIFVAGIVEAVLNNCGFKSTV   78 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL-~Dn~pl~~kfISvPkd~-~~lncaAF~aGIIeGaL~slGF~a~V   78 (170)
                      +|+|+|||+++||.+||||+|+|++ |||+++||| +|++|+.+ |+|+|+++ +.++|++|+||||||||+++||  +|
T Consensus        84 le~l~fI~k~~Wk~lfgk~~d~L~~-t~~~~~y~L~~d~nPl~~-fv~lP~~~~~~l~y~~f~cGIIrGaL~~~g~--~V  159 (193)
T 3cue_D           84 VKTSEVLSKCAFKIFLNITPNITNW-SHNKDTFSLILDENPLAD-FVELPMDAMKSLWYSNILCGVLKGSLEMVQL--DC  159 (193)
T ss_dssp             HHHHHHHHHHHHHHHSSCCCCCBCC-CTTSCCCBCCBSCCGGGS-SCCCCTTTTTSCCTTHHHHHHHHHHHHHTTC--CC
T ss_pred             HHHHHHHHHHHHHHHhCCCCcccee-cCCCCEEEEEECCchhhh-heeCcHhHHhCcchhhhHHHHHHHHHHhCCC--EE
Confidence            4799999999999999999999987 899999999 99999988 99999999 7899999999999999999999  78


Q ss_pred             eEEe-------CCCeEEEEEcCcchhc
Q psy8972          79 TAHW-------HKGTTYMIQFDEQEGK   98 (170)
Q Consensus        79 TAh~-------~p~TtFlIKF~~~V~~   98 (170)
                      |||+       .++|+|+|||+++|.+
T Consensus       160 ta~~~~d~l~g~~~t~~~Ikf~~~v~d  186 (193)
T 3cue_D          160 DVWFVSDILRGDSQTEIKVKLNRILKD  186 (193)
T ss_dssp             EEEECCCSSSSSSCBCEEEECCCCCSC
T ss_pred             EEEEeeccCCCCCCEEEEEEEhhhhhc
Confidence            8887       3479999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2j3wb1	168	d.278.1.2 (B:21-188) TRAPPC5, similar to trafficki	2e-36
d1wc9a_	161	d.278.1.2 (A:) Trafficking protein particle comple	9e-21

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 168

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

 Score =  121 bits (306), Expect = 2e-36
 Identities = 57/95 (60%), Positives = 76/95 (80%)

Query: 1   MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIF 60
           + +  F+K+N+WK +FGKE DKLE+ANDD++TYY+IE+E L+N +ISVPK+  +LNCA F
Sbjct: 63  LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAF 122

Query: 61  VAGIVEAVLNNCGFKSTVTAHWHKGTTYMIQFDEQ 95
             GIVEA+L + GF + VT HWHKGTT MI+FDE 
Sbjct: 123 TGGIVEAILTHSGFPAKVTVHWHKGTTLMIKFDES 157

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]} Length = 161

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.4 bits (201), Expect = 9e-21
 Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 6/98 (6%)

Query: 3   LAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVA 62
            A  +    +K   G         +     + LI + + +  F+ +P +  +L  +  + 
Sbjct: 63  TADVIAKVAFKMYLGITPSITNW-SPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLC 121

Query: 63  GIVEAVLNNCGFKSTVTAHWHK-----GTTYMIQFDEQ 95
           G++   L                     T   ++F  +
Sbjct: 122 GVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRR 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2j3wb1	168	TRAPPC5, similar to trafficking protein particle c	100.0
d1wc9a_	161	Trafficking protein particle complex subunit 3, Be	99.94

>d2j3wb1 d.278.1.2 (B:21-188) TRAPPC5, similar to trafficking protein particle complex 5 {Zebrafish (Brachydanio rerio) [TaxId: 7955]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: TRAPPC5, similar to trafficking protein particle complex 5
species: Zebrafish (Brachydanio rerio) [TaxId: 7955]

Probab=100.00  E-value=5.1e-42  Score=271.84  Aligned_cols=102  Identities=56%  Similarity=1.017  Sum_probs=98.8

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCceEEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEEeE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERTYYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTVTA   80 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~geYmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~VTA   80 (170)
                      +++|+|||+++|+++||||||+|+++++|+|+|||+||+|++++|+|+|+++++++|++|+||||||||+++||+|+|||
T Consensus        63 ~~~l~fI~k~~W~~lfgk~~d~L~~~~~~~~~y~I~d~~~~~~~~vs~p~~~~~l~y~~f~~GiIrGaL~~~g~~~~Vta  142 (168)
T d2j3wb1          63 LNILLFIKVNVWKALFGKEADKLEQANDDDKTYYIIEKEPLINAYISVPKENSTLNCAAFTGGIVEAILTHSGFPAKVTV  142 (168)
T ss_dssp             HHHHHHHHTHHHHHHHSSCCSEEEEETTEEEEEEEEESSCGGGGTCSSCCSSCCSHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCcCcccccccCCCCceEEEEcCCchhhheeccCccccccchHHHHHHHHHHHHHHCCCceEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEcCcchhchhhh
Q psy8972          81 HWHKGTTYMIQFDEQEGKFTAL  102 (170)
Q Consensus        81 h~~p~TtFlIKF~~~V~~re~~  102 (170)
                      |++|+|+|+|||+++|++||+.
T Consensus       143 ~~~~~~~f~ikf~~~v~~Re~~  164 (168)
T d2j3wb1         143 HWHKGTTLMIKFDESVIARDKA  164 (168)
T ss_dssp             EESSSEEEEEEECHHHHHHHHH
T ss_pred             eeCCCeEEEEEccHHHHHHHHh
Confidence            9999999999999999888864

>d1wc9a_ d.278.1.2 (A:) Trafficking protein particle complex subunit 3, Bet3 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: TRAPP components
domain: Trafficking protein particle complex subunit 3, Bet3 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3.9e-28  Score=191.26  Aligned_cols=93  Identities=12%  Similarity=0.167  Sum_probs=81.8

Q ss_pred             CcchhhhhhhhhhhhccccccccccccCCCce--EEEEcCCcceeeccccCCCCCCccccchhHHHHHHHHhcCCCceEE
Q psy8972           1 MKLAKFVKINLWKNIFGKECDKLERANDDERT--YYLIEQESLVNKFISVPKDKGSLNCAIFVAGIVEAVLNNCGFKSTV   78 (170)
Q Consensus         1 LdiLkFIckdvWk~LFGKqADnLeksTnh~ge--YmL~Dn~pl~~kfISvPkd~~~lncaAF~aGIIeGaL~slGF~a~V   78 (170)
                      +|+|+|||+++||.+||||+|+|+  ++|+++  ||+.|++| +++|+|+|++++.++|++|+||||||||+++||+|+|
T Consensus        61 l~~l~fI~~~~wk~~fgk~~d~l~--~~~~~~~~~~i~~~np-l~~fv~lP~~~~~l~y~~f~cGiIrGaL~~~g~~~~V  137 (161)
T d1wc9a_          61 RETADVIAKVAFKMYLGITPSITN--WSPAGDEFSLILENNP-LVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEA  137 (161)
T ss_dssp             HHHHHHHHHTHHHHHHSCCCEEEC--CCTTSCEEEEEESCCG-GGTTCCCCTTCTTCCTTTHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcccce--ecCCCCeEEEEecCCC-ccceEEcCcccCCceehhhHHHHHHHHHHHCCCeEEE
Confidence            478999999999999999999999  666664  55656666 6789999999999999999999999999999999999


Q ss_pred             eEEe-----CCCeEEEEEcCcch
Q psy8972          79 TAHW-----HKGTTYMIQFDEQE   96 (170)
Q Consensus        79 TAh~-----~p~TtFlIKF~~~V   96 (170)
                      |++.     .+.|.+.|||.+.+
T Consensus       138 ~~~~d~l~gd~~~~i~v~~~~~~  160 (161)
T d1wc9a_         138 KFVQDTLKGDGVTEIRMRFIRRI  160 (161)
T ss_dssp             EEEECGGGTCSSEEEEEEEEEEC
T ss_pred             EEEecccCCCCceEEEEEEeeec
Confidence            9997     45788999997643