Psyllid ID: psy9007

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS
Secondary Structure (PSIPRED)
ccccccccEEEEEEcccccEEEEcccccEEEEccccccccEEEEEEccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccEEEEEcccccEEccccHHHEEEEccccccccEcEEEEcccccccEEEcccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccc
Coil and Loop (DISEMBL)
MYLYVPQYITRTLIFRYllpisrlspwatyvteppvvghayeqriwnpkpqdkhkwtsskpkkpenlkiYESHVGictqeqkcasyeDFVRVVIPRIvkqgdfnnwnreefaykkldfgkwelvlppnpdgs
Flexible Loop (DISEMBL)
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRiwnpkpqdkhkwtsskpkkpenlKIYESHVGICTQEQKCASYEDFVRVVIPRivkqgdfnnwnREEFAykkldfgkwelvlppnpdgs
Low Complexity Region (SEG)
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS
Disordered region (IsUnstruct)
*YLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWN*******************LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVL*******
Disordered Region (DISOPRED)
*YLY**QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTS*KP***ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWEL**PP*****
Disordered Region (DISEMBL)
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPK************KKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS
Disordered Region (DISPRO)
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLYVPQYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q96VA4	689	1,4-alpha-glucan-branchin	yes	N/A	0.583	0.111	0.415	3e-13
D2WL32	899	1,4-alpha-glucan-branchin	yes	N/A	0.613	0.090	0.426	8e-13
Q6CCT1	691	1,4-alpha-glucan-branchin	yes	N/A	0.613	0.117	0.382	2e-12
Q9Y8H3	684	1,4-alpha-glucan-branchin	yes	N/A	0.651	0.125	0.360	4e-12
Q8NKE1	683	1,4-alpha-glucan-branchin	N/A	N/A	0.598	0.115	0.444	1e-11
Q9D6Y9	702	1,4-alpha-glucan-branchin	yes	N/A	0.568	0.106	0.487	1e-11
Q6BXN1	711	1,4-alpha-glucan-branchin	yes	N/A	0.606	0.112	0.421	5e-11
Q04446	702	1,4-alpha-glucan-branchin	yes	N/A	0.537	0.101	0.473	2e-10
Q6T308	699	1,4-alpha-glucan-branchin	N/A	N/A	0.583	0.110	0.463	2e-10
Q6EAS5	699	1,4-alpha-glucan-branchin	yes	N/A	0.568	0.107	0.475	3e-10

>sp|Q96VA4|GLGB_ASPOR 1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=gbeA PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           I R+  W   V +   V   YE   WNP  + ++K+  S+PK+PE+L+IYE+HVGI + E
Sbjct: 139 IYRIPAWIKRVVQDLSVSPTYEAVFWNPPTEKQYKFQYSRPKRPESLRIYEAHVGISSPE 198

Query: 81  QKCASYEDFVRVVIPRI 97
            K A+Y++F   ++PRI
Sbjct: 199 TKVATYKEFTSNMLPRI 215

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 8

>sp|D2WL32|GLGB3_ARATH 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE3 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 20  PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           P+ R+  WATYV +P   G       W P P+  +KW  SKPK PE+L+IYE HVGI   
Sbjct: 352 PLERVPAWATYV-QPEDEGKQAYAIHWEPSPEAAYKWKYSKPKVPESLRIYECHVGISGS 410

Query: 80  EQKCASYEDFVRVVIPRIVKQG 101
           E K +++E+F + V+P + + G
Sbjct: 411 EPKVSTFEEFTKKVLPHVKRAG 432

Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position. Essential during embryogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6CCT1|GLGB_YARLI 1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GLC3 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           + RL  W+TYV +       YE   WNP   +K++W +  P  P N +IYE+HVGI + E
Sbjct: 127 VDRLPAWSTYVVQDLSKSPIYEAVFWNPPESEKYQWKNKSPPTPANAQIYEAHVGISSSE 186

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            +  +Y++F + ++PRI K G
Sbjct: 187 PRVGTYKEFTKNILPRIHKLG 207

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9Y8H3|GLGB_EMENI 1,4-alpha-glucan-branching enzyme OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=be1 PE=2 SV=3

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 52/86 (60%)

Query: 12  TLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYE 71
           T++ R    I R+  W   V +   V   YE   WNP   +++ +  ++PKKPE+L+IYE
Sbjct: 125 TMVTRSGERIYRIPAWIKRVVQDLNVSPIYESVFWNPPKAERYNFQHARPKKPESLRIYE 184

Query: 72  SHVGICTQEQKCASYEDFVRVVIPRI 97
           +HVGI + + + A+Y++F   ++PRI
Sbjct: 185 AHVGISSPDTRVATYKEFTANMLPRI 210

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 2/81 (2%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           I RL  W   VT+   V  AY+   WNP PQ K++W ++ PKKP +L+IYE+HVGI T E
Sbjct: 138 IDRLPAWIKRVTQDLNVSLAYDAIFWNP-PQ-KYQWKNNSPKKPTSLRIYEAHVGISTNE 195

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            +  +Y +F   V+ RI   G
Sbjct: 196 GRVGTYNEFTDNVLKRIKDLG 216

Glomus intraradices (taxid: 4876)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9D6Y9|GLGB_MOUSE 1,4-alpha-glucan-branching enzyme OS=Mus musculus GN=Gbe1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 23  RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           R+SPWA YV  E   V   Y+   W   P+D +K+  S+PKKP +L+IYESHVGI + E 
Sbjct: 156 RISPWAKYVVRENNNVN--YDWIHW--APEDPYKFKHSRPKKPRSLRIYESHVGISSHEG 211

Query: 82  KCASYEDFVRVVIPRIVKQG 101
           K ASY+ F   V+PRI   G
Sbjct: 212 KIASYKHFTSNVLPRIKDLG 231

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6BXN1|GLGB_DEBHA 1,4-alpha-glucan-branching enzyme OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GLC3 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPENLKIYESHVGICT 78
           I RL PW    T P    + YE R WNP+P + +K+   +P+    + +KIYE+HVGI T
Sbjct: 146 IYRLCPWLKRAT-PSTENNLYEGRFWNPQPTETYKFKHERPRLESKDGIKIYEAHVGIST 204

Query: 79  QEQKCASYEDFVRVVIPRIVKQG 101
            E K  SY++F   V+P I K G
Sbjct: 205 PEPKVGSYKNFTTKVLPVIHKLG 227

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q04446|GLGB_HUMAN 1,4-alpha-glucan-branching enzyme OS=Homo sapiens GN=GBE1 PE=1 SV=3

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/76 (47%), Positives = 49/76 (64%), Gaps = 5/76 (6%)

Query: 23  RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           R+SPWA YV  E   V   Y+   W+P  +  +++  S+PKKP +L+IYESHVGI + E 
Sbjct: 156 RISPWAKYVVREGDNVN--YDWIHWDP--EHSYEFKHSRPKKPRSLRIYESHVGISSHEG 211

Query: 82  KCASYEDFVRVVIPRI 97
           K ASY+ F   V+PRI
Sbjct: 212 KVASYKHFTCNVLPRI 227

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6T308|GLGB_FELCA 1,4-alpha-glucan-branching enzyme OS=Felis catus GN=GBE1 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 5/82 (6%)

Query: 21  ISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           + R+SPWA YVT E   V   Y+   W+P  +  +K+  S+PKKP  ++IYESHVGI + 
Sbjct: 151 LYRISPWAKYVTREGENVN--YDWTHWDP--EHPYKFKHSRPKKPRGVRIYESHVGISSY 206

Query: 80  EQKCASYEDFVRVVIPRIVKQG 101
           E K ASY+ F   V+PRI   G
Sbjct: 207 EGKIASYKHFTYNVLPRIKDLG 228

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Felis catus (taxid: 9685)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6EAS5|GLGB_HORSE 1,4-alpha-glucan-branching enzyme OS=Equus caballus GN=GBE1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 23  RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           R+SPWA YV  E   V   Y+   W+P  +  +K+  S+PKKP +L+IYESHVGI + E 
Sbjct: 153 RISPWAKYVVRESGNVN--YDWIHWDP--EQPYKFKHSRPKKPRSLRIYESHVGISSHEG 208

Query: 82  KCASYEDFVRVVIPRIVKQG 101
           K ASY+ F   V+PRI   G
Sbjct: 209 KIASYKHFTCNVLPRIKGLG 228

Required for sufficient glycogen accumulation. The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule and, consequently, in reducing the osmotic pressure within cells.

Equus caballus (taxid: 9796)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
380026836	694	PREDICTED: LOW QUALITY PROTEIN: 1,4-alph	0.613	0.116	0.567	1e-18
340720425	669	PREDICTED: 1,4-alpha-glucan-branching en	0.613	0.121	0.555	2e-18
350410058	692	PREDICTED: 1,4-alpha-glucan-branching en	0.613	0.117	0.555	2e-18
383863554	692	PREDICTED: 1,4-alpha-glucan-branching en	0.613	0.117	0.543	1e-17
322785359	691	hypothetical protein SINV_12923 [Solenop	0.598	0.114	0.554	3e-17
332023850	697	1,4-alpha-glucan-branching enzyme [Acrom	0.598	0.113	0.554	1e-16
91076104	692	PREDICTED: similar to GA17312-PA [Tribol	0.598	0.114	0.537	2e-16
321455046	696	hypothetical protein DAPPUDRAFT_302911 [	0.613	0.116	0.547	3e-16
195066006	690	GH24987 [Drosophila grimshawi] gi|193896	0.613	0.117	0.440	4e-15
307197707	596	1,4-alpha-glucan-branching enzyme [Harpe	0.613	0.135	0.554	6e-15

>gi|380026836|ref|XP_003697146.1| PREDICTED: LOW QUALITY PROTEIN: 1,4-alpha-glucan-branching enzyme-like [Apis florea]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/81 (56%), Positives = 59/81 (72%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           + RLSPWATYVT+       Y+QRIW P P++ +K+  SK KKPE+L+IYE HVGI TQE
Sbjct: 144 LERLSPWATYVTQDKSESATYKQRIWYPLPENVYKFKYSKQKKPESLRIYECHVGIATQE 203

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            K  +Y +F + +IPRIVKQG
Sbjct: 204 LKIGTYLEFAKNIIPRIVKQG 224

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720425|ref|XP_003398639.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Bombus terrestris]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 59/81 (72%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           + RLSPWATYVT+       Y+QRIW+P  ++ +K+  SKPKKPE+L+IYE HVGI TQE
Sbjct: 144 LERLSPWATYVTQNRAESVTYKQRIWHPSSENVYKFKYSKPKKPESLRIYECHVGIATQE 203

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            K  +Y +F   +IPRIV+QG
Sbjct: 204 LKVGTYLEFAEKIIPRIVRQG 224

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410058|ref|XP_003488932.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Bombus impatiens]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 59/81 (72%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           + RLSPWATYVT+       Y+QRIW+P  ++ +K+  SKPKKPE+L+IYE HVGI T+E
Sbjct: 144 LERLSPWATYVTQNRAESVTYKQRIWHPSSENVYKFKYSKPKKPESLRIYECHVGIATEE 203

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            K  +Y +F   +IPRIVKQG
Sbjct: 204 LKVGTYLEFAEKIIPRIVKQG 224

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863554|ref|XP_003707245.1| PREDICTED: 1,4-alpha-glucan-branching enzyme-like [Megachile rotundata]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 58/81 (71%)

Query: 21  ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
           + RLSPWA YVT+       Y+QRIW+P  ++ +++   KPKKPE+L+IYE HVGI TQE
Sbjct: 144 LERLSPWANYVTQNRAESATYKQRIWHPLSKNTYRFKYPKPKKPESLRIYECHVGIATQE 203

Query: 81  QKCASYEDFVRVVIPRIVKQG 101
            K  +Y +F + VIPRIVKQG
Sbjct: 204 LKVGTYLEFAKNVIPRIVKQG 224

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785359|gb|EFZ12033.1| hypothetical protein SINV_12923 [Solenopsis invicta]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 4/83 (4%)

Query: 21  ISRLSPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 78
           + RLSPWATYVT+ P    G  Y+QRIW+P  ++++K+   KPK+PE+L+IYE HVGI T
Sbjct: 144 LERLSPWATYVTQKPDKSEGTTYKQRIWHP--ENRYKFKHPKPKRPESLRIYECHVGIAT 201

Query: 79  QEQKCASYEDFVRVVIPRIVKQG 101
           QE +  +Y +F R VIPRIV+QG
Sbjct: 202 QEFRVGTYLEFARDVIPRIVRQG 224

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023850|gb|EGI64074.1| 1,4-alpha-glucan-branching enzyme [Acromyrmex echinatior]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 61/83 (73%), Gaps = 4/83 (4%)

Query: 21  ISRLSPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 78
           + RLSPWATYVT+ P    G  Y+QRIW+P  ++ +K+   KPK+PE+L+IYE H+GI T
Sbjct: 144 LERLSPWATYVTQKPDKSEGITYKQRIWHP--ENTYKFKHPKPKRPESLRIYECHIGIGT 201

Query: 79  QEQKCASYEDFVRVVIPRIVKQG 101
           QE +  +Y +F R VIPRIVKQG
Sbjct: 202 QECRVGTYLEFARDVIPRIVKQG 224

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076104|ref|XP_968648.1| PREDICTED: similar to GA17312-PA [Tribolium castaneum] gi|270014582|gb|EFA11030.1| hypothetical protein TcasGA2_TC004619 [Tribolium castaneum]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 23  RLSPWATYVTEPPV-VGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           RLSP+ATYV EPP   G  Y+Q+ WNP   +K+++  S+P KP+ L+IYE HVGI T E 
Sbjct: 146 RLSPYATYVVEPPKDQGTIYKQKFWNPPNSEKYEFRHSRPAKPKGLRIYECHVGIATSEL 205

Query: 82  KCASYEDFVRVVIPRIVKQG 101
           K  SY++F   ++PRIVKQG
Sbjct: 206 KVGSYDNFTDNILPRIVKQG 225

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321455046|gb|EFX66191.1| hypothetical protein DAPPUDRAFT_302911 [Daphnia pulex]

 Score = 89.7 bits (221), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/84 (54%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 19  LPISRLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGIC 77
           L + RLSPWA YV +PP   G AY+Q +WNP  Q K+++  S+PK+P +L+IYE HVGI 
Sbjct: 147 LLLDRLSPWAAYVVQPPPNEGCAYQQVVWNP--QHKYEFKHSRPKRPNSLRIYECHVGIA 204

Query: 78  TQEQKCASYEDFVRVVIPRIVKQG 101
           T E K  SY++F   VIPRIVK G
Sbjct: 205 TTEGKIGSYKEFRENVIPRIVKLG 228

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195066006|ref|XP_001996762.1| GH24987 [Drosophila grimshawi] gi|193896617|gb|EDV95483.1| GH24987 [Drosophila grimshawi]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 3/84 (3%)

Query: 21  ISRLSPWATYVTEPPVV---GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGIC 77
           + RLSPWA YV +PP     G  Y+Q +W P   ++++   S+P KP++L+IYE HVGI 
Sbjct: 138 LDRLSPWAKYVVQPPKSANQGVNYKQYVWQPPASERYQRQHSRPAKPKSLRIYECHVGIA 197

Query: 78  TQEQKCASYEDFVRVVIPRIVKQG 101
           +QE +  SY++F   ++PRI +QG
Sbjct: 198 SQEPRVGSYDEFADRIVPRIKRQG 221

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197707|gb|EFN78864.1| 1,4-alpha-glucan-branching enzyme [Harpegnathos saltator]

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 62/83 (74%), Gaps = 2/83 (2%)

Query: 21  ISRLSPWATYVTEPP--VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 78
           + RLSPWATYVT+P     G  Y+QRIW+P P++ +K+   KPKKPE+L+IYE HVGI T
Sbjct: 143 LERLSPWATYVTQPADKSEGTTYKQRIWHPSPENVYKFKHPKPKKPESLRIYECHVGIST 202

Query: 79  QEQKCASYEDFVRVVIPRIVKQG 101
           QE +  +Y +F + +IPRI+KQG
Sbjct: 203 QELRVGTYLEFAKNIIPRIIKQG 225

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2092349	899	EMB2729 "EMBRYO DEFECTIVE 2729	0.621	0.091	0.453	2.9e-15
WB|WBGene00011409	681	T04A8.7 [Caenorhabditis elegan	0.583	0.113	0.475	1.1e-14
UNIPROTKB|G4NAD9	691	MGG_03186 "1,4-alpha-glucan-br	0.613	0.117	0.407	1.6e-14
FB|FBgn0053138	685	AGBE "1,4-Alpha-Glucan Branchi	0.613	0.118	0.416	2e-14
ZFIN|ZDB-GENE-110411-171	688	si:ch211-213e17.1 "si:ch211-21	0.575	0.110	0.455	3.6e-12
UNIPROTKB|F1SK65	319	F1SK65 "Uncharacterized protei	0.568	0.235	0.487	4.1e-12
UNIPROTKB|F1PX32	699	GBE1 "Uncharacterized protein"	0.568	0.107	0.5	7.8e-12
MGI|MGI:1921435	702	Gbe1 "glucan (1,4-alpha-), bra	0.568	0.106	0.487	7.9e-12
ZFIN|ZDB-GENE-110914-16	630	si:ch211-247m23.1 "si:ch211-24	0.583	0.122	0.458	2.3e-11
ASPGD|ASPL0000046871	684	AN2314 [Emericella nidulans (t	0.651	0.125	0.360	2.6e-11

TAIR|locus:2092349 EMB2729 "EMBRYO DEFECTIVE 2729" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
 Identities = 39/86 (45%), Positives = 54/86 (62%)

Query:    20 PISRLSPWATYVTEPPVVG-HAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 78
             P+ R+  WATYV +P   G  AY    W P P+  +KW  SKPK PE+L+IYE HVGI  
Sbjct:   352 PLERVPAWATYV-QPEDEGKQAYAIH-WEPSPEAAYKWKYSKPKVPESLRIYECHVGISG 409

Query:    79 QEQKCASYEDFVRVVIPRIVKQGDFN 104
              E K +++E+F + V+P  VK+  +N
Sbjct:   410 SEPKVSTFEEFTKKVLPH-VKRAGYN 434

GO:0003824 "catalytic activity" evidence=IEA

GO:0004556 "alpha-amylase activity" evidence=ISS

GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS;IMP

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0043169 "cation binding" evidence=IEA

GO:0009536 "plastid" evidence=IDA

GO:0009791 "post-embryonic development" evidence=IMP

WB|WBGene00011409 T04A8.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 38/80 (47%), Positives = 53/80 (66%)

Query:    23 RLSPWATYVTEP-PVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
             +LSPWAT+VT P P     Y Q  WNP P+ K++   ++P +P +L+IYE+HVGI + E 
Sbjct:   135 KLSPWATFVTCPNPKETVIYHQNFWNP-PE-KYQLKEARPARPASLRIYEAHVGISSSEG 192

Query:    82 KCASYEDFVRVVIPRIVKQG 101
             K  +Y +F   V+PRI KQG
Sbjct:   193 KINTYREFADDVLPRIQKQG 212

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|G4NAD9 MGG_03186 "1,4-alpha-glucan-branching enzyme" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 196 (74.1 bits), Expect = 1.6e-14, P = 1.6e-14
 Identities = 33/81 (40%), Positives = 55/81 (67%)

Query:    21 ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
             I RL  W  YVT+   V  AY+ R WNP   +++ + + +PKKP+++++YE+HVGI + E
Sbjct:   144 IDRLPAWIKYVTQDLSVSPAYDARFWNPPSSERYTFKNPRPKKPKSVRVYEAHVGISSPE 203

Query:    81 QKCASYEDFVRVVIPRIVKQG 101
              + A+Y++F + ++PRI K G
Sbjct:   204 LRVATYKEFTKNMLPRIKKLG 224

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0053138 AGBE "1,4-Alpha-Glucan Branching Enzyme" [Drosophila melanogaster (taxid:7227)]

 Score = 195 (73.7 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 35/84 (41%), Positives = 54/84 (64%)

Query:    21 ISRLSPWATYVTEPPVV---GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGIC 77
             + RLSPWA YV +PP     G  Y+Q +W P   ++++     P +P++L+IYE HVGI 
Sbjct:   133 LDRLSPWAKYVVQPPKSANQGVNYKQYVWEPPSYERYQRQHPGPPRPKSLRIYECHVGIA 192

Query:    78 TQEQKCASYEDFVRVVIPRIVKQG 101
             +QE +  SY++F   ++PRI +QG
Sbjct:   193 SQEPRVGSYDEFADRIVPRIKRQG 216

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=ISS

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

ZFIN|ZDB-GENE-110411-171 si:ch211-213e17.1 "si:ch211-213e17.1" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 3.6e-12, P = 3.6e-12
 Identities = 36/79 (45%), Positives = 53/79 (67%)

Query:    23 RLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQK 82
             R+SPWA YVT+  V    Y+   W+P PQ  +++   +P +P +L+IYE+HVGI + E+K
Sbjct:   140 RISPWAKYVTKT-VDSVTYDWTHWDP-PQP-YQFQHPRPPRPSSLRIYEAHVGISSPEEK 196

Query:    83 CASYEDFVRVVIPRIVKQG 101
              ASY++F R V+PRI   G
Sbjct:   197 IASYKNFTRDVLPRIKDLG 215

GO:0043169 "cation binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

UNIPROTKB|F1SK65 F1SK65 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 4.1e-12, P = 4.1e-12
 Identities = 39/80 (48%), Positives = 50/80 (62%)

Query:    23 RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
             R+SPWA YVT E   V   Y+   W+P  +  +K+  SKPKKP+  +IYESHVGI + E 
Sbjct:    91 RISPWAKYVTREGDNVN--YDWTHWDP--EHPYKFKHSKPKKPKGPRIYESHVGISSYEG 146

Query:    82 KCASYEDFVRVVIPRIVKQG 101
             K ASY+ F   V+PRI   G
Sbjct:   147 KIASYKHFTCNVLPRIKDLG 166

GO:0043169 "cation binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

UNIPROTKB|F1PX32 GBE1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 7.8e-12, P = 7.8e-12
 Identities = 40/80 (50%), Positives = 50/80 (62%)

Query:    23 RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
             R+SPWA YVT E   V   Y+   W+P  +  +K+  SKPKKP  L+IYESHVGI + E 
Sbjct:   153 RISPWAKYVTREGDNVN--YDWIHWDP--EHPYKFKHSKPKKPRGLRIYESHVGISSYEG 208

Query:    82 KCASYEDFVRVVIPRIVKQG 101
             K ASY+ F   V+PRI   G
Sbjct:   209 KIASYKHFTCNVLPRIKDLG 228

GO:0043169 "cation binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

MGI|MGI:1921435 Gbe1 "glucan (1,4-alpha-), branching enzyme 1" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 7.9e-12, P = 7.9e-12
 Identities = 39/80 (48%), Positives = 50/80 (62%)

Query:    23 RLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
             R+SPWA YV  E   V   Y+   W   P+D +K+  S+PKKP +L+IYESHVGI + E 
Sbjct:   156 RISPWAKYVVRENNNVN--YDWIHW--APEDPYKFKHSRPKKPRSLRIYESHVGISSHEG 211

Query:    82 KCASYEDFVRVVIPRIVKQG 101
             K ASY+ F   V+PRI   G
Sbjct:   212 KIASYKHFTSNVLPRIKDLG 231

GO:0003824 "catalytic activity" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=ISO

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISO

GO:0043169 "cation binding" evidence=IEA

ZFIN|ZDB-GENE-110914-16 si:ch211-247m23.1 "si:ch211-247m23.1" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 39/85 (45%), Positives = 52/85 (61%)

Query:    23 RLSPWATYVT--EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE 80
             R+SPWA YVT  E  V+   Y+   W+P     HK    +P+KP +L+IYESHVGI + E
Sbjct:   141 RISPWAKYVTRHEKSVI---YDWVHWDPPQPYIHK--HPRPQKPRSLRIYESHVGIASPE 195

Query:    81 QKCASYEDFVRVVIPRIVKQGDFNN 105
              K ASY +F   V+PRI   G +N+
Sbjct:   196 GKIASYSNFTHNVLPRIKDLG-YNS 219

GO:0043169 "cation binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

ASPGD|ASPL0000046871 AN2314 [Emericella nidulans (taxid:162425)]

 Score = 166 (63.5 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 31/86 (36%), Positives = 52/86 (60%)

Query:    12 TLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYE 71
             T++ R    I R+  W   V +   V   YE   WNP   +++ +  ++PKKPE+L+IYE
Sbjct:   125 TMVTRSGERIYRIPAWIKRVVQDLNVSPIYESVFWNPPKAERYNFQHARPKKPESLRIYE 184

Query:    72 SHVGICTQEQKCASYEDFVRVVIPRI 97
             +HVGI + + + A+Y++F   ++PRI
Sbjct:   185 AHVGISSPDTRVATYKEFTANMLPRI 210

GO:0005982 "starch metabolic process" evidence=RCA

GO:0003844 "1,4-alpha-glucan branching enzyme activity" evidence=IEA;RCA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0043169 "cation binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
PLN02960	897	PLN02960, PLN02960, alpha-amylase	1e-19
cd11321	406	cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic	2e-16
PLN02447	758	PLN02447, PLN02447, 1,4-alpha-glucan-branching enz	3e-16
PLN03244	872	PLN03244, PLN03244, alpha-amylase; Provisional	6e-16
cd02854	95	cd02854, E_set_GBE_euk_N, N-terminal Early set dom	2e-11
PLN02447	758	PLN02447, PLN02447, 1,4-alpha-glucan-branching enz	3e-06
pfam02922	83	pfam02922, CBM_48, Carbohydrate-binding module 48	0.003

>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 20  PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           P+ R+  WATYV  P   G  +    W P P++ +KW   +PK P++L+IYE HVGI   
Sbjct: 350 PLERVPAWATYV-LPDPDGKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGS 408

Query: 80  EQKCASYEDFVRVVIPRIVKQG 101
           E K +S+++F + V+P + K G
Sbjct: 409 EPKISSFKEFTQKVLPHVKKAG 430

Length = 897

>gnl|CDD|200460 cd11321, AmyAc_bac_euk_BE, Alpha amylase catalytic domain found in bacterial and eukaryotic branching enzymes

 Score = 73.4 bits (181), Expect = 2e-16
 Identities = 23/52 (44%), Positives = 36/52 (69%)

Query: 50  PQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQG 101
           P++ +++   +P KP  L+IYE+HVG+ ++E K ASY +F   V+PRI K G
Sbjct: 1   PEEPYQFKHPRPPKPRALRIYEAHVGMSSEEPKVASYREFTDNVLPRIKKLG 52

Branching enzymes (BEs) catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain, and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends, glycogen is more reactive to synthesis and digestion as well as being more soluble. This group includes bacterial and eukaryotic proteins. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase. Length = 406

>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)

Query: 20  PISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICT 78
            + R+  W  Y    P  +G  Y    W+P  ++K+ +   +P +P  L+IYE+HVG+ +
Sbjct: 182 WVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSS 241

Query: 79  QEQKCASYEDFVRVVIPRIVKQG 101
           +E K  SY +F   V+PRI   G
Sbjct: 242 EEPKVNSYREFADDVLPRIKALG 264

Length = 758

>gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 20  PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           P+ R+  WATYV  P   G       W P P+  HKW + KPK PE+L+IYE HVGI   
Sbjct: 355 PLERIPAWATYV-LPDDDGKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGS 413

Query: 80  EQKCASYEDFVRVV 93
           E K +S+E+F   V
Sbjct: 414 EPKISSFEEFTEKV 427

Length = 872

>gnl|CDD|199884 cd02854, E_set_GBE_euk_N, N-terminal Early set domain associated with the catalytic domain of eukaryotic glycogen branching enzyme (also called 1,4 alpha glucan branching enzyme)

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 19/29 (65%), Positives = 21/29 (72%)

Query: 101 GDFNNWNREEFAYKKLDFGKWELVLPPNP 129
           GDFNNWNRE    K+ +FGKWEL LPP  
Sbjct: 20  GDFNNWNRESHPLKRDEFGKWELFLPPKE 48

This subfamily is composed of predominantly eukaryotic 1,4 alpha glucan branching enzymes, also called glycogen branching enzymes or starch binding enzymes in plants. E or "early" set domains are associated with the catalytic domain of the 1,4 alpha glucan branching enzymes at the N-terminal end. These enzymes catalyze the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage, yielding a non-reducing end oligosaccharide chain, as well as the subsequent attachment of short glucosyl chains to the alpha-1,6 position. Starch is composed of two types of glucan polymer: amylose and amylopectin. Amylose is mainly composed of linear chains of alpha-1,4 linked glucose residues and amylopectin consists of shorter alpha-1,4 linked chains connected by alpha-1,6 linkages. Amylopectin is synthesized from linear chains by starch branching enzyme. The N-terminal domains of the branching enzyme proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase, among others. Length = 95

>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme

 Score = 44.7 bits (106), Expect = 3e-06
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 101 GDFNNWNREEFAYKKLDFGKWELVLPPNPDGS 132
           GDFNNWN       K +FG WE+ L P+ DGS
Sbjct: 132 GDFNNWNPNAHWMTKNEFGVWEIFL-PDADGS 162

Length = 758

>gnl|CDD|217288 pfam02922, CBM_48, Carbohydrate-binding module 48 (Isoamylase N-terminal domain)

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 101 GDFNNWNREEFAYKKL-DFGKWELVLPPNPDG 131
            DFNNW+ EE   ++  + G WE+ LP +   
Sbjct: 29  LDFNNWDGEEHPMERKREGGVWEVFLPGDLPH 60

This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PLN03244	872	alpha-amylase; Provisional	99.86
KOG0470|consensus	757		99.71
PLN02447	758	1,4-alpha-glucan-branching enzyme	99.6
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	99.34
PLN02960	897	alpha-amylase	99.24
PRK12568	730	glycogen branching enzyme; Provisional	99.08
PLN02447	758	1,4-alpha-glucan-branching enzyme	99.04
PRK14705	1224	glycogen branching enzyme; Provisional	98.97
PF02922	85	CBM_48: Carbohydrate-binding module 48 (Isoamylase	98.9
PRK14706	639	glycogen branching enzyme; Provisional	98.85
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	98.81
PRK05402	726	glycogen branching enzyme; Provisional	98.69
PRK05402	726	glycogen branching enzyme; Provisional	98.68
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	98.62
PRK14706	639	glycogen branching enzyme; Provisional	98.62
PRK12313	633	glycogen branching enzyme; Provisional	98.56
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	98.53
cd02855	106	Glycogen_branching_enzyme_N_term Glycogen branchin	98.5
PLN02960	897	alpha-amylase	98.38
PRK12313	633	glycogen branching enzyme; Provisional	98.36
cd02861	82	E_set_proteins_like E or "early" set-like proteins	98.35
cd02860	100	Pullulanase_N_term Pullulanase domain N-terminus.	98.23
cd02856	103	Glycogen_debranching_enzyme_N_term Glycogen_debran	98.19
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	98.19
cd02853	85	MTHase_N_term Maltooligosyl trehalose synthase (MT	98.15
PRK14705	1224	glycogen branching enzyme; Provisional	98.13
cd02854	99	Glycogen_branching_enzyme_like_N_term Glycogen bra	98.0
PRK12568	730	glycogen branching enzyme; Provisional	97.91
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	97.87
PLN03244	872	alpha-amylase; Provisional	97.86
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	97.85
cd02852	119	Isoamylase_N_term Isoamylase N-terminus domain. Is	97.84
KOG0470|consensus	757		97.81
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	97.79
TIGR02104	605	pulA_typeI pullulanase, type I. Pullulan is an unu	97.72
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	97.46
PRK03705	658	glycogen debranching enzyme; Provisional	97.27
TIGR02402	542	trehalose_TreZ malto-oligosyltrehalose trehalohydr	97.05
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	96.93
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	96.64
PRK03705	658	glycogen debranching enzyme; Provisional	96.61
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	96.33
TIGR02100	688	glgX_debranch glycogen debranching enzyme GlgX. Th	96.07
PLN02877	970	alpha-amylase/limit dextrinase	96.0
TIGR02102	1111	pullulan_Gpos pullulanase, extracellular, Gram-pos	95.87
TIGR02103	898	pullul_strch alpha-1,6-glucosidases, pullulanase-t	95.3
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	94.2
PLN02877	970	alpha-amylase/limit dextrinase	88.96
PRK14510	1221	putative bifunctional 4-alpha-glucanotransferase/g	85.99

>PLN03244 alpha-amylase; Provisional

Probab=99.86  E-value=7.9e-23  Score=186.84  Aligned_cols=85  Identities=38%  Similarity=0.625  Sum_probs=77.7

Q ss_pred             heeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEe
Q psy9007           8 YITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYE   87 (132)
Q Consensus         8 ~~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~   87 (132)
                      .+|-.|...+|+ +|||||||+||+|+++ +..|+|+||+|+.+++|+|+|++|++|.+++||||||||++++++++||+
T Consensus       344 ~~k~~~~~~~g~-~~RiPaw~~~~~~~~~-~~~~~~~~w~P~~~~~y~~k~~~p~~p~~lrIYE~HvGms~~e~kv~ty~  421 (872)
T PLN03244        344 KYRLYFNTPDGP-LERIPAWATYVLPDDD-GKQAFAIHWEPPPEAAHKWKNMKPKVPESLRIYECHVGISGSEPKISSFE  421 (872)
T ss_pred             eEEEEEEcCCCC-cccCCCCeeeEEecCC-CCceeeeEeCCCcccCCccCCCCCCCCCCceEEEEEeeecCCCCCcccHH
Confidence            466666666677 9999999999999987 78999999999988899999999999999999999999999999999999


Q ss_pred             eeccccc
Q psy9007          88 DFVRVVI   94 (132)
Q Consensus        88 ~wApnal   94 (132)
                      +|+.++.
T Consensus       422 eF~~~vt  428 (872)
T PLN03244        422 EFTEKVT  428 (872)
T ss_pred             HHhhccC
Confidence            9999855

>KOG0470|consensus

Probab=99.71  E-value=2.2e-18  Score=156.10  Aligned_cols=105  Identities=34%  Similarity=0.542  Sum_probs=93.8

Q ss_pred             eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCc-hHHHhhccc-ceEecCCceEE-
Q psy9007           9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPE-NLKIYESHV-GICTQEQKCAS-   85 (132)
Q Consensus         9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~-~~~IYEaHv-g~~~~~~~v~t-   85 (132)
                      ++-.+...+|+.++|+||||++++|+.. ..+|.+.+|+|+++.+|.|++++|+.|+ .|+|||+|| |+++.++++.+ 
T Consensus       172 ~~~~~~~p~g~~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~e~~w~~~~~~p~~P~~sL~IYE~HVrgfS~~E~~v~~~  250 (757)
T KOG0470|consen  172 SKIHLSTPYGETCKRIPAWATYVDQEGE-GPQYYGIYWDPSPEFDWGFKHSRPKIPESSLRIYELHVRGFSSHESKVNTR  250 (757)
T ss_pred             eEEEeecCCcceeeccChHhhcccCCCc-ccceeeccCCCCCcccccccCCCCCCChhheEEEEEeeccccCCCCccccc
Confidence            4445667789999999999999999876 8999999999998899999999999997 999999999 99988888777 


Q ss_pred             --EeeecccccceeEEeccccccc--cccc-cee
Q psy9007          86 --YEDFVRVVIPRIVKQGDFNNWN--REEF-AYK  114 (132)
Q Consensus        86 --F~~wApnalP~V~~lG~nn~W~--~~~~-~m~  114 (132)
                        |+.||.++||+|+.+|||+++.  ..|| .|+
T Consensus       251 ~gY~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~  284 (757)
T KOG0470|consen  251 GGYLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYY  284 (757)
T ss_pred             cchhhhhhhhhhHHHHhCccceEEeehhhhhhhh
Confidence              9999999999999999999997  4666 454

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=99.60  E-value=1.3e-16  Score=145.87  Aligned_cols=100  Identities=28%  Similarity=0.534  Sum_probs=88.0

Q ss_pred             heeeEEEecCCcceeecCccceEEecCCCC-CCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEE
Q psy9007           8 YITRTLIFRYLLPISRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASY   86 (132)
Q Consensus         8 ~~~~~~~~~~~~~~dRip~w~~~v~q~~~~-~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF   86 (132)
                      ..|=.|...+|+.++|+||||+++++++.+ +.+|++++|+|+.+++|.|++++|++|..+.|||+|+|+++++++.++|
T Consensus       170 ~Yky~i~~~~g~~~~r~dpya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~~~~gty  249 (758)
T PLN02447        170 RVKIRMETPDGRWVDRIPAWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEEPKVNSY  249 (758)
T ss_pred             EEEEEEEeCCCcEEeecCchHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCCCCCCCH
Confidence            556666667788999999999999998752 2479999999986678999999998888999999999998877777899


Q ss_pred             eeecccccceeEEeccccccc
Q psy9007          87 EDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        87 ~~wApnalP~V~~lG~nn~W~  107 (132)
                      ++++...||+|+.+|++++|.
T Consensus       250 ~~~~~~~L~ylk~LG~t~I~L  270 (758)
T PLN02447        250 REFADDVLPRIKALGYNAVQL  270 (758)
T ss_pred             HHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999997

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=99.34  E-value=2.3e-12  Score=91.53  Aligned_cols=47  Identities=36%  Similarity=0.800  Sum_probs=43.1

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNP  129 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~  129 (132)
                      ++.+|++|||+|. +|.++|+||+|+..+++|.+.++|+|+++||+..
T Consensus         5 ~g~~FrvwAP~A~-~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~   51 (99)
T cd02854           5 GGVTYREWAPNAE-EVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNE   51 (99)
T ss_pred             CeEEEEEECCCCC-EEEEEccCCCCCCcCcccEECCCCEEEEEECCcc
Confidence            3589999999999 9999999999998889999988899999999854

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PLN02960 alpha-amylase

Probab=99.24  E-value=1.9e-12  Score=120.25  Aligned_cols=96  Identities=34%  Similarity=0.633  Sum_probs=81.5

Q ss_pred             eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEeee
Q psy9007          10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDF   89 (132)
Q Consensus        10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~~w   89 (132)
                      +-.|... ++.++|+||||+++.++++ +..+.+++|+|+...+|.|++.+|..+..+.|||+|+|+++.+++.++|+.+
T Consensus       341 ky~v~~~-~g~~~~vdpyA~~~qp~~~-~~~~~~v~~d~~~~~~y~W~~~~p~~~~~~vIYElHvg~~~~e~~~gtf~~~  418 (897)
T PLN02960        341 RVYFNTP-DGPLERVPAWATYVLPDPD-GKQWYAIHWEPPPEEAYKWKFERPKVPKSLRIYECHVGISGSEPKISSFKEF  418 (897)
T ss_pred             EEEEEeC-CCceEECCCcceeEeecCC-CccceEEEeCCCCCCCCCCCCCCCCCCCCcEEEEEecccccCCCCCCCHHHH
Confidence            3344443 4568999999999988776 6678999999874468999999887778899999999988877777899999


Q ss_pred             cccccceeEEeccccccc
Q psy9007          90 VRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        90 ApnalP~V~~lG~nn~W~  107 (132)
                      +...||+|+.+|++++|.
T Consensus       419 ~e~~LdYLk~LGvt~IeL  436 (897)
T PLN02960        419 TQKVLPHVKKAGYNAIQL  436 (897)
T ss_pred             HHHHHHHHHHcCCCEEEE
Confidence            999999999999999997

>PRK12568 glycogen branching enzyme; Provisional

Probab=99.08  E-value=1.8e-10  Score=105.68  Aligned_cols=66  Identities=20%  Similarity=0.361  Sum_probs=55.5

Q ss_pred             chHHHhh---cccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYE---SHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYE---aHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      ++.++|+   ||+....+.. +++|++|||+|. +|+++|+||.|+...++|.+.++|+|++|||+...|+
T Consensus       119 ~~~~~y~~lGah~~~~~g~~-Gv~FaVWAPnA~-~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~  187 (730)
T PRK12568        119 DGQALRRALGAQHVQVGEVP-GVRFAVWAPHAQ-RVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA  187 (730)
T ss_pred             chhhhHHhcCCeEeeECCCC-cEEEEEECCCCC-EEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC
Confidence            5566777   8975444333 489999999999 9999999999998889998777899999999998874

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=99.04  E-value=2.6e-10  Score=104.89  Aligned_cols=55  Identities=27%  Similarity=0.541  Sum_probs=47.0

Q ss_pred             HHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCC
Q psy9007          67 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPP  127 (132)
Q Consensus        67 ~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~  127 (132)
                      ++.++||..   .  ++++|++|||+|. +|.++|+||+|+..+++|++.++|+|+++||+
T Consensus       104 y~~lGa~~~---~--~g~~FrvWAP~A~-~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~  158 (758)
T PLN02447        104 YEKFGFNRS---E--GGITYREWAPGAK-AAALIGDFNNWNPNAHWMTKNEFGVWEIFLPD  158 (758)
T ss_pred             HHhceeEEe---c--CCEEEEEECCCCC-EEEEEEecCCCCCCccCceeCCCCEEEEEECC
Confidence            444446752   1  3489999999999 99999999999988899999888999999998

>PRK14705 glycogen branching enzyme; Provisional

Probab=98.97  E-value=9.9e-10  Score=105.24  Aligned_cols=67  Identities=24%  Similarity=0.491  Sum_probs=54.5

Q ss_pred             chHHHhh---cccceEe---cCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYE---SHVGICT---QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYE---aHvg~~~---~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      +++++|+   ||+....   +...+++|++|||||. +|+++|+||+|+...++|.+ .++|+|++|||+...|.
T Consensus       615 ~~~~~y~~lGah~~~~~~~~~~~~Gv~F~VWAP~A~-~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~  688 (1224)
T PRK14705        615 RHEKLWDVLGAHVQHYKSSLGDVDGVSFAVWAPNAQ-AVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA  688 (1224)
T ss_pred             chhhHHHhcCCeEeeccCccCCCCeEEEEEECCCCC-EEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC
Confidence            5666776   8975432   1122589999999999 99999999999988899987 56799999999998874

>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3

Probab=98.90  E-value=3.1e-09  Score=71.26  Aligned_cols=49  Identities=27%  Similarity=0.473  Sum_probs=42.3

Q ss_pred             ceEEEeeecccccceeEEeccccc-cccccccee-eCCCCeEEEEcC-CCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNN-WNREEFAYK-KLDFGKWELVLP-PNPDG  131 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~-W~~~~~~m~-~~~~G~We~~ip-~~~~G  131 (132)
                      +..+|++|||+|. +|.++++++. |...+++|. +.+.|+|+++++ ..+.|
T Consensus        11 ~~~~F~vwaP~A~-~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g   62 (85)
T PF02922_consen   11 GGVTFRVWAPNAK-SVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPG   62 (85)
T ss_dssp             TEEEEEEE-TTES-EEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTT
T ss_pred             CEEEEEEECCCCC-EEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCC
Confidence            4699999999999 9999999999 888889999 588899999999 55544

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....

>PRK14706 glycogen branching enzyme; Provisional

Probab=98.85  E-value=4.1e-09  Score=95.36  Aligned_cols=66  Identities=21%  Similarity=0.423  Sum_probs=53.1

Q ss_pred             chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+++..||+....... +++|++|||+|. +|.++|+||.|+..+++|.+.++|+|+++||+...|+
T Consensus        22 ~~~~~lGah~~~~~~~~-Gv~FrvwAP~A~-~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g~   87 (639)
T PRK14706         22 RPDHLLGAHPATEGGVE-GVRFAVWAPGAQ-HVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPGQ   87 (639)
T ss_pred             chhHhcCccCccCCCcc-cEEEEEECCCCC-EEEEEEecCCcccccccccccCCCEEEEEECCCCCCC
Confidence            34556668873222212 489999999999 9999999999998889999877899999999988774

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=98.81  E-value=7e-09  Score=93.94  Aligned_cols=65  Identities=26%  Similarity=0.563  Sum_probs=52.7

Q ss_pred             chHHHhh---cccceEecCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYE---SHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYE---aHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      .+.++|+   ||..-. +. ++.+|++|||||. +|+++|+||+|+...++|.. .++|+|++|||++..|+
T Consensus        18 ~~~~~~~~~GA~~~~~-g~-~~~~F~vWAP~a~-~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G~   86 (628)
T COG0296          18 THLRLYEKLGAHPIEN-GV-SGVRFRVWAPNAR-RVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPGT   86 (628)
T ss_pred             cchhhHhhhCcccccC-CC-CceEEEEECCCCC-eEEEEeecCCccceecccccCCCCceEEEeccCCCCCC
Confidence            4455555   887533 22 2499999999999 99999999999988888875 57799999999988884

>PRK05402 glycogen branching enzyme; Provisional

Probab=98.69  E-value=2.3e-08  Score=91.31  Aligned_cols=59  Identities=10%  Similarity=-0.010  Sum_probs=49.1

Q ss_pred             chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      +.+++..||+..   .  +.+|++|||||. +|.++|+||.  +..++|.+ .++|+|++||| +++|+
T Consensus        16 ~~~~~lGah~~~---~--g~~f~vwaP~A~-~V~vvgdfn~--~~~~~m~~~~~~G~w~~~ip-~~~g~   75 (726)
T PRK05402         16 DPFSVLGPHPTG---A--GLVVRALLPGAE-EVWVILPGGG--RKLAELERLHPRGLFAGVLP-RKGPF   75 (726)
T ss_pred             CHHHhcCCCCCC---C--cEEEEEECCCCe-EEEEEeecCC--CccccceEcCCCceEEEEec-CCCCC
Confidence            566777799741   1  489999999999 9999999994  66889997 46799999999 88874

>PRK05402 glycogen branching enzyme; Provisional

Probab=98.68  E-value=3.5e-08  Score=90.11  Aligned_cols=65  Identities=20%  Similarity=0.386  Sum_probs=51.3

Q ss_pred             hHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007          66 NLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGS  132 (132)
Q Consensus        66 ~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~-~~G~We~~ip~~~~G~  132 (132)
                      .++.+.||+....... +++|++|||+|. +|.++|+||.|+...++|.+. +.|+|+++||+...|.
T Consensus       116 ~~~~LGah~~~~~~~~-gv~FrvwAP~A~-~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~  181 (726)
T PRK05402        116 LYETLGAHPVTVDGVS-GVRFAVWAPNAR-RVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGE  181 (726)
T ss_pred             hhhccccEEeccCCCC-cEEEEEECCCCC-EEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCC
Confidence            4455557763211123 489999999999 999999999999878899986 7799999999987763

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=98.62  E-value=7.9e-08  Score=65.93  Aligned_cols=46  Identities=15%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      ..+|++|||.|. +|.++|+++.|.  .++|.+.+.|.|++.+++...|
T Consensus         7 ~v~F~vwAP~A~-~V~L~~~~~~~~--~~~m~~~~~G~W~~~v~~l~~g   52 (85)
T cd02858           7 TVTFRLFAPKAN-EVQVRGSWGGAG--SHPMTKDEAGVWSVTTGPLAPG   52 (85)
T ss_pred             cEEEEEECCCCC-EEEEEeecCCCc--cEeCeECCCeEEEEEECCCCCc
Confidence            489999999998 999999998654  6899988889999999765544

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14706 glycogen branching enzyme; Provisional

Probab=98.62  E-value=6.7e-09  Score=94.02  Aligned_cols=91  Identities=15%  Similarity=0.273  Sum_probs=71.2

Q ss_pred             eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC------CCchHHHhhcccceEecCC-
Q psy9007           9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK------KPENLKIYESHVGICTQEQ-   81 (132)
Q Consensus         9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~------~p~~~~IYEaHvg~~~~~~-   81 (132)
                      .+=+|....|..+++++|||+++.+++. +   .+++|+++    |+|++..+.      .++.+.|||+|+|+++.+. 
T Consensus        89 Yky~I~~~~g~~~~~~DPYa~~~~~~~~-~---~svv~~~~----~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~  160 (639)
T PRK14706         89 YKFRVTGAAGQTVDKMDPYGSFFEVRPN-T---ASIIWEDR----FEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDD  160 (639)
T ss_pred             EEEEEECCCCCEEeccCcceEEEecCCC-C---ceEECCCC----CCCCCcccccccCCccCCCcEEEEEehhhcccCCC
Confidence            3444444457789999999999999765 3   68999876    999877542      2346899999999886433 


Q ss_pred             -ceEEEeeecccccceeEEeccccccc
Q psy9007          82 -KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 -~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                       +..+|++.+..++|+|+.+|++++|.
T Consensus       161 g~~~ty~~~~~~l~~ylk~lG~t~vel  187 (639)
T PRK14706        161 GWFLNYRELAHRLGEYVTYMGYTHVEL  187 (639)
T ss_pred             CCccCHHHHHHHHHHHHHHcCCCEEEc
Confidence             23689999999778999999999997

>PRK12313 glycogen branching enzyme; Provisional

Probab=98.56  E-value=9.1e-08  Score=85.98  Aligned_cols=66  Identities=18%  Similarity=0.386  Sum_probs=52.9

Q ss_pred             chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.++.+.||...... .++++|++|||+|. +|.++|+||+|+...++|.+.+.|+|++++|+...|+
T Consensus        22 ~~~~~lGah~~~~~~-~~gv~Frv~AP~A~-~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~   87 (633)
T PRK12313         22 RLYEYLGAHLEEVDG-EKGTYFRVWAPNAQ-AVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQ   87 (633)
T ss_pred             cchhcCCcEEeccCC-cccEEEEEECCCCC-EEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCC
Confidence            446667788732211 22489999999999 9999999999998889998877899999999877663

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=98.53  E-value=1.6e-07  Score=84.39  Aligned_cols=66  Identities=23%  Similarity=0.422  Sum_probs=53.0

Q ss_pred             chHHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~-~~G~We~~ip~~~~G~  132 (132)
                      +.+.++.||.... ....+++|++|||+|. +|.++|+||.|+..+++|.+. +.|+|+++||+...|.
T Consensus        12 ~~~~~LGah~~~~-~~~~g~~FrvwAP~A~-~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~   78 (613)
T TIGR01515        12 RSYELLGSHYMEL-DGVSGTRFCVWAPNAR-EVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE   78 (613)
T ss_pred             ChHHhcCceEecc-CCcCcEEEEEECCCCC-EEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC
Confidence            5677788997321 1113589999999999 999999999999888899875 4799999999987764

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain

Probab=98.50  E-value=4e-07  Score=62.92  Aligned_cols=62  Identities=21%  Similarity=0.428  Sum_probs=47.5

Q ss_pred             hHHHhhcccceEecC--CceEEEeeecccccceeEEecccccccccccceeeCC-CCeEEEEcCCCCCC
Q psy9007          66 NLKIYESHVGICTQE--QKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLD-FGKWELVLPPNPDG  131 (132)
Q Consensus        66 ~~~IYEaHvg~~~~~--~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~-~G~We~~ip~~~~G  131 (132)
                      .+..+++|..   +.  .++.+|++|+|+|. +|.++++++.|+...++|.+.+ .|+|++++|+...|
T Consensus         6 p~~~lG~~~~---~~~~~~~~~frv~aP~A~-~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~   70 (106)
T cd02855           6 LYEKLGAHPT---EVDGVSGVRFAVWAPNAR-RVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEG   70 (106)
T ss_pred             HHHhcCCEEc---ccCCcCCEEEEEECCCCC-EEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCC
Confidence            3456677752   21  02489999999999 9999999999976667998855 79999999876544

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina

>PLN02960 alpha-amylase

Probab=98.38  E-value=3.7e-07  Score=85.47  Aligned_cols=45  Identities=27%  Similarity=0.496  Sum_probs=41.3

Q ss_pred             eEEEeeecccccceeEEeccccccccccccee-----eCCCCeEEEEcCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-----KLDFGKWELVLPPN  128 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-----~~~~G~We~~ip~~  128 (132)
                      .+.|+||||.|. .++++|+||+|++.+++|+     ++++|.|+|++++.
T Consensus       129 ~~~~~~wap~a~-~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~  178 (897)
T PLN02960        129 RVDFMEWAPGAR-YCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDK  178 (897)
T ss_pred             CeEEEEEcCCce-eEEEeecccCCCcccchhhcccccccccceEEEEechh
Confidence            489999999999 9999999999999999987     67889999999864

>PRK12313 glycogen branching enzyme; Provisional

Probab=98.36  E-value=5.5e-08  Score=87.38  Aligned_cols=90  Identities=19%  Similarity=0.328  Sum_probs=70.9

Q ss_pred             eEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC--------CCchHHHhhcccceEecC--
Q psy9007          11 RTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--------KPENLKIYESHVGICTQE--   80 (132)
Q Consensus        11 ~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~--------~p~~~~IYEaHvg~~~~~--   80 (132)
                      =+|...+++++++.+||++.+.+.+. +   .+++++|+   +|.|++....        ..+.+.|||+|++..+.+  
T Consensus        91 y~v~~~~g~~~~~~DPya~~~~~~~~-~---~s~v~d~~---~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~  163 (633)
T PRK12313         91 YHISRQDGYQVEKIDPFAFYFEARPG-T---ASIVWDLP---EYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNED  163 (633)
T ss_pred             EEEECCCCeEEecCCCceEEEecCCC-C---ceEECCCc---ccCCCChhhhhccccCCCCCCCceEEEEehhccccCCC
Confidence            34445567888999999999998654 3   68999986   5999887531        126689999999976543  


Q ss_pred             CceEEEeeecccccceeEEeccccccc
Q psy9007          81 QKCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        81 ~~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      ++.++|+..+...||+|+.+|++++|.
T Consensus       164 ~~~g~~~~~~~~ll~yl~~LGv~~i~L  190 (633)
T PRK12313        164 GRPLSYRELADELIPYVKEMGYTHVEF  190 (633)
T ss_pred             CCccCHHHHHHHHHHHHHHcCCCEEEe
Confidence            445789999999779999999999997

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=98.35  E-value=8.5e-07  Score=60.04  Aligned_cols=44  Identities=20%  Similarity=0.360  Sum_probs=38.9

Q ss_pred             EEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      .+|+.|||++. .|.+.|.||+|+  .++|.+.+.|.|++.++ ...|
T Consensus         4 vtf~~~ap~a~-~V~v~G~fn~W~--~~~m~~~~~G~w~~~~~-l~~G   47 (82)
T cd02861           4 VVFAYRGPEAD-SVYLAGSFNNWN--AIPMEREGDGLWVVTVE-LRPG   47 (82)
T ss_pred             EEEEEECCCCC-EEEEEeECCCCC--cccCEECCCCcEEEEEe-CCCC
Confidence            79999999998 999999999998  67999877799999997 4455

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02860 Pullulanase_N_term Pullulanase domain N-terminus

Probab=98.23  E-value=3.2e-06  Score=58.88  Aligned_cols=48  Identities=13%  Similarity=0.124  Sum_probs=39.4

Q ss_pred             eEEEeeecccccceeEEeccccccc----ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN----REEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~----~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.++.|. .|+    ...++|.+.+.|+|+++|++..+|.
T Consensus         9 ~~~F~vwAP~A~-~V~L~l~~-~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~   60 (100)
T cd02860           9 KTTFRLWAPTAQ-SVKLLLYD-KDDQDKVLETVQMKRGENGVWSVTLDGDLEGY   60 (100)
T ss_pred             CEEEEEECCCCc-EEEEEEEc-CCCCCCcceeEeeecCCCCEEEEEeCCccCCc
Confidence            489999999999 99999864 454    2457998877899999999887773

Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain

Probab=98.19  E-value=3.8e-06  Score=59.00  Aligned_cols=48  Identities=15%  Similarity=0.037  Sum_probs=39.6

Q ss_pred             eEEEeeecccccceeEEeccccccc-ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN-REEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~-~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.++.|++ ++ ...++|.+.+.|+|++.+++...|.
T Consensus        10 g~~F~vwAP~A~-~V~L~l~~~-~~~~~~~~m~~~~~GvW~~~v~~~~~g~   58 (103)
T cd02856          10 GCNFAVHSENAT-RIELCLFDE-DGSETRLPLTEEYGGVWHGFLPGIKAGQ   58 (103)
T ss_pred             CeEEEEECCCCC-EEEEEEEeC-CCCEEEEEcccccCCEEEEEECCCCCCC
Confidence            489999999999 999999764 33 4467898777899999999887774

Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=98.19  E-value=2.8e-07  Score=83.65  Aligned_cols=98  Identities=19%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCC----CCC--CCchHHHhhcccceEecCCc
Q psy9007           9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSS----KPK--KPENLKIYESHVGICTQEQK   82 (132)
Q Consensus         9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~----~p~--~p~~~~IYEaHvg~~~~~~~   82 (132)
                      .|=.|+.+.|...+..+|++++..+.+. +   ..++++++  . |+|+..    +.+  .-+.+.|||+|+|+++.+ +
T Consensus        88 Yky~l~~~~g~~~~~~DP~a~~~~~~p~-~---aS~v~~~~--~-y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~-~  159 (628)
T COG0296          88 YKYELIDPSGQLRLKADPYARRQEVGPH-T---ASQVVDLP--D-YEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD-R  159 (628)
T ss_pred             EEEEEeCCCCceeeccCchhhccCCCCC-C---cceecCCC--C-cccccccccccccCCCCCCceEEEEEeeeccCC-C
Confidence            4556777778778888999999888765 4   67999986  2 999944    332  237899999999998875 5


Q ss_pred             eEEEeeecccccceeEEeccccccc--cccccee
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN--REEFAYK  114 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~--~~~~~m~  114 (132)
                      .-+|.+.|...||+++.||+++|+.  ..+||..
T Consensus       160 ~~~~~e~a~~llpYl~elG~T~IELMPv~e~p~~  193 (628)
T COG0296         160 FLGYFELAIELLPYLKELGITHIELMPVAEHPGD  193 (628)
T ss_pred             CcCHHHHHHHHhHHHHHhCCCEEEEcccccCCCC
Confidence            5678999999999999999999997  4667763

>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain

Probab=98.15  E-value=5.7e-06  Score=56.25  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=37.0

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.++.++  +  ...+|.+.+.|+|++++++. .|.
T Consensus         9 ~~~F~vwAP~A~-~V~l~l~~--~--~~~~m~~~~~G~W~~~v~~~-~g~   52 (85)
T cd02853           9 GTRFRLWAPDAK-RVTLRLDD--G--EEIPMQRDGDGWFEAEVPGA-AGT   52 (85)
T ss_pred             CEEEEEeCCCCC-EEEEEecC--C--CcccCccCCCcEEEEEeCCC-CCC
Confidence            489999999999 99999875  3  35789887789999999987 663

MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>PRK14705 glycogen branching enzyme; Provisional

Probab=98.13  E-value=5.4e-07  Score=86.83  Aligned_cols=93  Identities=13%  Similarity=0.189  Sum_probs=72.2

Q ss_pred             eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCC-----C---CCchHHHhhcccceEecCC
Q psy9007          10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-----K---KPENLKIYESHVGICTQEQ   81 (132)
Q Consensus        10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p-----~---~p~~~~IYEaHvg~~~~~~   81 (132)
                      |=.|....|+++++.+||++.+.+++. +   .++++++.    |+|++...     +   ..+.+.|||+|+|..+.  
T Consensus       691 ky~i~~~~g~~~~k~DPyA~~~e~~p~-~---aS~V~d~~----~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~--  760 (1224)
T PRK14705        691 KFEILTKAGQWVEKADPLAFGTEVPPL-T---ASRVVEAS----YAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL--  760 (1224)
T ss_pred             EEEEEcCCCcEEecCCccccccccCCC-C---CeEEeCCC----CCcCChhhhhccccCCCCcCCcEEEEEEeccccc--
Confidence            445555668889999999999988764 3   57999985    98887632     1   12678999999998765  


Q ss_pred             ceEEEeeecccccceeEEeccccccc--ccccce
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWN--REEFAY  113 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~--~~~~~m  113 (132)
                       ..+|++.+...+|+|+.+|++++|.  ..++|.
T Consensus       761 -~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~  793 (1224)
T PRK14705        761 -GLGYRELAKELVDYVKWLGFTHVEFMPVAEHPF  793 (1224)
T ss_pred             -CCchHHHHHHHHHHHHHhCCCEEEECccccCCC
Confidence             2579999999889999999999997  344553

>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain

Probab=98.00  E-value=9.2e-06  Score=57.61  Aligned_cols=39  Identities=23%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             hheeeEEEecCCcceeecCccceEEecCCCCCCceeeEEe
Q psy9007           7 QYITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIW   46 (132)
Q Consensus         7 ~~~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w   46 (132)
                      ++.|=.|...+|++++|+||||++++++++ +.+|+|+||
T Consensus        61 ~~Yky~i~~~~G~~~~~~DPyA~~~~~~~~-~~~~~~~~~   99 (99)
T cd02854          61 SKIKVRMVTPSGEWIDRIPAWIKYVTQDKE-TALYDGVFW   99 (99)
T ss_pred             CEEEEEEEeCCCCEEEEcCcceeEEEeCCC-CcceeeEEC
Confidence            466777777789999999999999999988 779999998

Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi

>PRK12568 glycogen branching enzyme; Provisional

Probab=97.91  E-value=1.6e-06  Score=79.97  Aligned_cols=89  Identities=17%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             EEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCC-------CCCchHHHhhcccceEecC--Cc
Q psy9007          12 TLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP-------KKPENLKIYESHVGICTQE--QK   82 (132)
Q Consensus        12 ~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p-------~~p~~~~IYEaHvg~~~~~--~~   82 (132)
                      .|....|+...+++|||+.+..+++ +   .+++.++.   +|+|++...       ...+.+.|||+|+|..+..  ++
T Consensus       192 eI~~~~G~~~~k~DPYA~~~e~~p~-~---asvV~~~~---~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~  264 (730)
T PRK12568        192 AITAADGRVLLKADPVARQTELPPA-T---ASVVPSAA---AFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQ  264 (730)
T ss_pred             EEEcCCCeEeecCCCcceEeecCCC-C---CeEEcCCC---CCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCC
Confidence            4444567778899999999988765 3   56787753   488876632       2347889999999987643  23


Q ss_pred             eEEEeeecccccceeEEeccccccc
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      ..+|+..|...+|+|+.+|++++|.
T Consensus       265 ~~~~~~la~~ll~ylk~LGvt~I~L  289 (730)
T PRK12568        265 PLDWPTLAEQLIPYVQQLGFTHIEL  289 (730)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            4689999999889999999999997

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=97.87  E-value=2.3e-06  Score=76.96  Aligned_cols=88  Identities=19%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCcc-----ccCCCCCC-C--chHHHhhcccceEecCC
Q psy9007          10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHK-----WTSSKPKK-P--ENLKIYESHVGICTQEQ   81 (132)
Q Consensus        10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~-----f~~~~p~~-p--~~~~IYEaHvg~~~~~~   81 (132)
                      +=.|....|+...+++|||+.+.++++ +   .+++.+|+   .|.     |++.++++ |  +.+.|||+|++..+.+ 
T Consensus        81 ~y~v~~~~g~~~~~~DPYA~~~~~~~~-~---~s~v~d~~---~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~-  152 (613)
T TIGR01515        81 KYEIVTNNGEIRLKADPYAFYAEVRPN-T---ASLVYDLE---GYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG-  152 (613)
T ss_pred             EEEEECCCCcEEEeCCCCEeeeccCCC-C---cEEEECCc---cCccCchhhhhcccccCcccCCceEEEEehhhccCC-
Confidence            334444456777899999999988754 3   56788875   354     44444321 2  4678999999988653 


Q ss_pred             ceEEEeeecccccceeEEeccccccc
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                        ++|+..+...+|+|+.||++++|.
T Consensus       153 --g~~~~i~~~l~dyl~~LGvt~i~L  176 (613)
T TIGR01515       153 --LSYRELADQLIPYVKELGFTHIEL  176 (613)
T ss_pred             --CCHHHHHHHHHHHHHHcCCCEEEE
Confidence              689999999769999999999997

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PLN03244 alpha-amylase; Provisional

Probab=97.86  E-value=1.3e-05  Score=74.81  Aligned_cols=45  Identities=27%  Similarity=0.499  Sum_probs=40.2

Q ss_pred             eEEEeeecccccceeEEeccccccccccccee-----eCCCCeEEEEcCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-----KLDFGKWELVLPPN  128 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-----~~~~G~We~~ip~~  128 (132)
                      ...|+||||.|. ...++|+||+|++.++.-+     ++++|.|++++++.
T Consensus       132 ~~~~~ewapga~-~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~  181 (872)
T PLN03244        132 RVDFMDWAPGAR-YCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDK  181 (872)
T ss_pred             CceeEeecCCcc-eeeeeccccCCCccccccccccccccccceEEEEechh
Confidence            389999999999 9999999999999888744     78889999999864

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=97.85  E-value=4.6e-05  Score=49.37  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNP  129 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~  129 (132)
                      ..+|++|||++. +|.++++++.| ...++|.+...|+|++.++...
T Consensus         5 ~v~f~v~ap~a~-~v~l~~~~~~~-~~~~~~~~~~~g~w~~~v~~~~   49 (83)
T cd02688           5 GVTFTVRGPKAQ-RVSLAGSFNGD-TQLIPMTKVEDGYWEVELPLPS   49 (83)
T ss_pred             cEEEEEECCCCC-EEEEEEEECCC-CCcccCEECCCceEEEEEcCCC
Confidence            489999999998 99999999874 3468998877799999998765

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>cd02852 Isoamylase_N_term Isoamylase N-terminus domain

Probab=97.84  E-value=3.9e-05  Score=54.93  Aligned_cols=48  Identities=6%  Similarity=-0.059  Sum_probs=37.4

Q ss_pred             eEEEeeecccccceeEEeccccccc---c-cccceeeCC---CCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN---R-EEFAYKKLD---FGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~---~-~~~~m~~~~---~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.++.|+ .|+   . ...+|.+.+   .|+|+++|++...|.
T Consensus         8 g~~F~vwAP~A~-~V~L~lf~-~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~   62 (119)
T cd02852           8 GVNFSVYSSNAT-AVELLLFD-PGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ   62 (119)
T ss_pred             CEEEEEECCCCC-EEEEEEEe-CCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC
Confidence            489999999999 99999975 333   1 346786543   599999999988774

Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0470|consensus

Probab=97.81  E-value=1.8e-05  Score=73.04  Aligned_cols=52  Identities=35%  Similarity=0.726  Sum_probs=45.2

Q ss_pred             cCCceEEEeeecccccceeEEeccccccccccccee-eCCCCeEEEEcCCCCCCC
Q psy9007          79 QEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYK-KLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        79 ~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~-~~~~G~We~~ip~~~~G~  132 (132)
                      .+++ .+|.+|||.+. .+.++||+|+|+.....|. +++.|.|++.+|+..+||
T Consensus       111 ~d~~-v~~~ewaP~a~-~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~~~~~~s  163 (757)
T KOG0470|consen  111 PDGR-VDFTEWAPLAE-AVSLIGDFNNWNPSSNELKPKDDLGVWEIDLPPKVNGS  163 (757)
T ss_pred             CCCc-eeeeeeccccc-ccccccccCCCCCcccccCcccccceeEEecCcccCCC
Confidence            3444 89999999988 9999999999998888887 678899999999886664

>TIGR02104 pulA_typeI pullulanase, type I

Probab=97.79  E-value=1.2e-05  Score=72.13  Aligned_cols=86  Identities=16%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             CCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCC-C--CCCchHHHhhcccceEecCCc-----eEEEee
Q psy9007          17 YLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPENLKIYESHVGICTQEQK-----CASYED   88 (132)
Q Consensus        17 ~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~-p--~~p~~~~IYEaHvg~~~~~~~-----v~tF~~   88 (132)
                      .+.....++|||+.+..+..     .+++.++...+++.|...+ +  ..++...|||+||+.++....     .++|+-
T Consensus        80 ~~~~~~~~DPya~~~~~~~~-----~s~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~  154 (605)
T TIGR02104        80 NGKWRETVDPYAKAVTVNGK-----RGAVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLG  154 (605)
T ss_pred             CCCeEEEcCCCcceeccCCC-----cEEEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceee
Confidence            34556789999999887642     4688888644567887765 3  345778999999997653221     278999


Q ss_pred             eccc----------ccceeEEeccccccc
Q psy9007          89 FVRV----------VIPRIVKQGDFNNWN  107 (132)
Q Consensus        89 wApn----------alP~V~~lG~nn~W~  107 (132)
                      ++..          .||+|+.||.+++|.
T Consensus       155 ~~e~~~~~~~g~~~~LdyL~~LGvt~I~L  183 (605)
T TIGR02104       155 LTETGTKGPNGVSTGLDYLKELGVTHVQL  183 (605)
T ss_pred             eeccCccccccchhHHHHHHHcCCCEEEe
Confidence            9876          379999999999997

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>TIGR02104 pulA_typeI pullulanase, type I

Probab=97.72  E-value=5.8e-05  Score=67.79  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=39.4

Q ss_pred             eEEEeeecccccceeEEecccccccc----cccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNR----EEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~----~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.+++++ .|+.    +.++|.+...|+|+++||+...|.
T Consensus        20 ~~~F~vwaP~a~-~V~l~~~~-~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~   71 (605)
T TIGR02104        20 KTVFRVWAPTAT-EVELLLYK-SGEDGEPYKVVKMKRGENGVWSAVLEGDLHGY   71 (605)
T ss_pred             eeEEEEECCCCC-EEEEEEEc-CCCCCccceEEecccCCCCEEEEEECCCCCCC
Confidence            489999999999 99999865 4542    367898877899999999887774

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=97.46  E-value=0.00022  Score=67.39  Aligned_cols=49  Identities=6%  Similarity=0.036  Sum_probs=41.6

Q ss_pred             eEEEeeecccccceeEEeccccccc-ccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN-REEFAYKKL-DFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~-~~~~~m~~~-~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.+++|.+.++ ...++|.+. ..|+|++++|+...|.
T Consensus       136 gv~FrVWAPtA~-~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~  186 (898)
T TIGR02103       136 GVTFRLWAPTAQ-QVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA  186 (898)
T ss_pred             cEEEEEECCCCC-EEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC
Confidence            489999999999 999999987764 556899875 6799999999887773

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PRK03705 glycogen debranching enzyme; Provisional

Probab=97.27  E-value=0.00059  Score=62.44  Aligned_cols=49  Identities=14%  Similarity=0.073  Sum_probs=40.6

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.++.|........++|.+.+.|+|+++||+..+|.
T Consensus        20 g~~F~vwAP~A~-~V~L~l~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~   68 (658)
T PRK03705         20 GVNFTLFSAHAE-RVELCVFDENGQEQRYDLPARSGDIWHGYLPGARPGL   68 (658)
T ss_pred             CEEEEEECCCCC-EEEEEEEcCCCCeeeEeeeeccCCEEEEEECCCCCCC
Confidence            489999999999 9999987654344567898777799999999988874

>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase

Probab=97.05  E-value=9.1e-05  Score=65.98  Aligned_cols=77  Identities=19%  Similarity=0.292  Sum_probs=61.3

Q ss_pred             ceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC--CCchHHHhhcccceEecCCceEEEeeeccccccee
Q psy9007          20 PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK--KPENLKIYESHVGICTQEQKCASYEDFVRVVIPRI   97 (132)
Q Consensus        20 ~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~--~p~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V   97 (132)
                      ....++||++.+....+ +   .+++++|.   .|+|+++.++  +.+...|||+|++.++.+   ++|+..+.. ||+|
T Consensus        52 ~~~v~DPya~~~~~~~~-~---~S~V~d~~---~~~w~~~~~~~~~~~~~viYE~hv~~f~~~---G~~~gi~~~-l~yl  120 (542)
T TIGR02402        52 GTPVPDPASRRQPDGVH-G---PSQVVDPD---RYAWQDTGWRGRPLEEAVIYELHVGTFTPE---GTFDAAIEK-LPYL  120 (542)
T ss_pred             eEEecCccccccccCCC-C---CeEEecCc---ccCCCCccccCCCccccEEEEEEhhhcCCC---CCHHHHHHh-hHHH
Confidence            35678999998755443 3   58999986   4999988763  347889999999988763   578888887 7899


Q ss_pred             EEeccccccc
Q psy9007          98 VKQGDFNNWN  107 (132)
Q Consensus        98 ~~lG~nn~W~  107 (132)
                      +.+|++++|.
T Consensus       121 ~~LGv~~i~L  130 (542)
T TIGR02402       121 ADLGITAIEL  130 (542)
T ss_pred             HHcCCCEEEe
Confidence            9999999997

Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=96.93  E-value=0.0015  Score=63.06  Aligned_cols=45  Identities=16%  Similarity=0.135  Sum_probs=37.0

Q ss_pred             EEEeeecccccceeEEecccc-cccc--cccceeeCCCCeEEEEcCCCC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFN-NWNR--EEFAYKKLDFGKWELVLPPNP  129 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn-~W~~--~~~~m~~~~~G~We~~ip~~~  129 (132)
                      .+|++|||+|. +|.+++|.. .++.  ..++|.+.+.|+|+++|++..
T Consensus       329 v~F~vWAP~A~-~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~  376 (1111)
T TIGR02102       329 VTLKLWSPSAD-HVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKEN  376 (1111)
T ss_pred             EEEEEECCCCC-EEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcc
Confidence            68999999999 999999854 4542  468998877899999999643

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=96.64  E-value=0.0039  Score=42.11  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=33.8

Q ss_pred             EEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      .+|+-.+ .+. .|.+.|.|++|+. ..||.+.++| |++.++ .+.|
T Consensus         4 v~f~~~~-~a~-~V~v~G~F~~W~~-~~pm~~~~~~-~~~~~~-L~~g   46 (79)
T cd02859           4 TTFVWPG-GGK-EVYVTGSFDNWKK-KIPLEKSGKG-FSATLR-LPPG   46 (79)
T ss_pred             EEEEEcC-CCc-EEEEEEEcCCCCc-cccceECCCC-cEEEEE-cCCC
Confidence            5677777 667 8999999999986 6899987667 988884 3444

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>PRK03705 glycogen debranching enzyme; Provisional

Probab=96.61  E-value=0.00054  Score=62.72  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             eeecCccceEEecCCCCCC-----------------ceeeEEeCCCCCCCccccCCCCCC--CchHHHhhcccceEec-C
Q psy9007          21 ISRLSPWATYVTEPPVVGH-----------------AYEQRIWNPKPQDKHKWTSSKPKK--PENLKIYESHVGICTQ-E   80 (132)
Q Consensus        21 ~dRip~w~~~v~q~~~~~~-----------------~f~~~~w~P~~~~~Y~f~~~~p~~--p~~~~IYEaHvg~~~~-~   80 (132)
                      ..-++|||+.++.....+.                 ...+++.++    +|.|++..++.  .+...|||+||+..+. .
T Consensus        90 ~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----~~~W~~~~~p~~~~~~~vIYE~hvr~ft~~~  165 (658)
T PRK03705         90 KLLIDPCARQVEGEVKDDPRLHGGHDEPDYRDNAAIAPKCVVVDD----HYDWEDDAPPRTPWGSTVIYEAHVRGLTYLH  165 (658)
T ss_pred             cEecCcCceEEccccccCccccccccCCccccccccCCceEEecC----CCCCCCCCCCCCCccccEEEEEehhhhcccC
Confidence            4469999999987421011                 123455554    49999876532  3678899999976542 1


Q ss_pred             Cc-----eEEEeeeccc-ccceeEEeccccccc
Q psy9007          81 QK-----CASYEDFVRV-VIPRIVKQGDFNNWN  107 (132)
Q Consensus        81 ~~-----v~tF~~wApn-alP~V~~lG~nn~W~  107 (132)
                      +.     -++|+-.+.. .|++++.||.+++|.
T Consensus       166 ~~~~~~~~Gtf~g~~~~~~LdYLk~LGvt~I~L  198 (658)
T PRK03705        166 PEIPVEIRGTYAALGHPVMIAYLKQLGITALEL  198 (658)
T ss_pred             CCCCccccccHHHhhcccchHHHHHcCCCEEEe
Confidence            11     2789888864 589999999999997

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=96.33  E-value=0.0088  Score=55.09  Aligned_cols=48  Identities=10%  Similarity=0.029  Sum_probs=37.6

Q ss_pred             eEEEeeecccccceeEEeccccccc---ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~---~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.++-|.. ++   ...++|.+...|+|+++||+..+|.
T Consensus        15 g~~F~vwap~A~-~V~L~l~~~-~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~   65 (688)
T TIGR02100        15 GVNFALFSANAE-KVELCLFDA-QGEKEEARLPLPERTDDIWHGYLPGAQPGQ   65 (688)
T ss_pred             cEEEEEECCCCC-EEEEEEEcC-CCCceeeEEecccCCCCEEEEEECCCCCCC
Confidence            489999999999 999875532 32   1357888776799999999988773

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX

Probab=96.07  E-value=0.0014  Score=60.29  Aligned_cols=84  Identities=21%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             ceeecCccceEEecCCCC-C-----------------------CceeeEEeCCCCCCCccccCC--CCCC-CchHHHhhc
Q psy9007          20 PISRLSPWATYVTEPPVV-G-----------------------HAYEQRIWNPKPQDKHKWTSS--KPKK-PENLKIYES   72 (132)
Q Consensus        20 ~~dRip~w~~~v~q~~~~-~-----------------------~~f~~~~w~P~~~~~Y~f~~~--~p~~-p~~~~IYEa   72 (132)
                      ....++|||+.+..+..- .                       ....+++.+++    |.|++.  +|.. .+...|||+
T Consensus        86 ~~~~~DPYA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~~----~~w~~~~~~p~~~~~d~iIYE~  161 (688)
T TIGR02100        86 NKLLLDPYAKALDGDLIWDDALFGYRIGHPDQDLSFDERDSAPGMPKAVVVDPD----FDWGGDEQRPRTPWEDTIIYEA  161 (688)
T ss_pred             CceecCcCceeecCCCcccccccccccccccccccccccccccccCceEEeCCC----CCCCCcccCCCCCccccEEEEE
Confidence            355799999999865210 0                       01246777765    899876  3333 377899999


Q ss_pred             ccceEecC-C-----ceEEEeeeccc-ccceeEEeccccccc
Q psy9007          73 HVGICTQE-Q-----KCASYEDFVRV-VIPRIVKQGDFNNWN  107 (132)
Q Consensus        73 Hvg~~~~~-~-----~v~tF~~wApn-alP~V~~lG~nn~W~  107 (132)
                      ||+.++.. +     ..++|+-.+.. .||.|+.||.+++|.
T Consensus       162 hvr~Ft~~~~~~~~~~~Gtf~Gi~~~~~LdyLk~LGvtaI~L  203 (688)
T TIGR02100       162 HVKGFTQLHPDIPEELRGTYAGLAHPAMIDYLKKLGVTAVEL  203 (688)
T ss_pred             EhHHhcCCCCCCCcccccCHHHHhccchhHHHHHcCCCEEEE
Confidence            99865432 1     12788888874 589999999999997

This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.

>PLN02877 alpha-amylase/limit dextrinase

Probab=96.00  E-value=0.013  Score=56.05  Aligned_cols=59  Identities=15%  Similarity=0.126  Sum_probs=40.9

Q ss_pred             hhcccceEecCCceEEEeeecccccceeEEeccccc--ccc-cccceeeCCCCeEEEEcCCCCCC
Q psy9007          70 YESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNN--WNR-EEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        70 YEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~--W~~-~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      |+...|..-... +.+|++|||+|. +|.++-|.+.  +.. ..++|. ...|+|++++++..+|
T Consensus       211 y~~~LGA~~~~~-g~~F~VWAPtA~-~V~L~lyd~~~~~~~~~~~~m~-~~~GVWsv~v~~~~~G  272 (970)
T PLN02877        211 YDGPLGAHFSKD-AVSLYLWAPTAQ-AVSLCLYDDPRGKEPLEIVQLK-ESNGVWSVEGPKSWEG  272 (970)
T ss_pred             CCCCCcceEecC-CEEEEEECCCCC-EEEEEEecCCCCccceEEeccc-CCCCEEEEEeccCCCC
Confidence            444455332223 489999999999 9999987542  222 235676 5579999999987776

>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive

Probab=95.87  E-value=0.0021  Score=62.09  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=63.7

Q ss_pred             cCCcceeecCccceEEec-CCC----CCCceeeEEeCCCCC--CCccccCCCC-CCCchHHHhhcccceEecCC------
Q psy9007          16 RYLLPISRLSPWATYVTE-PPV----VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPENLKIYESHVGICTQEQ------   81 (132)
Q Consensus        16 ~~~~~~dRip~w~~~v~q-~~~----~~~~f~~~~w~P~~~--~~Y~f~~~~p-~~p~~~~IYEaHvg~~~~~~------   81 (132)
                      ..++....++|||+.+.. +..    ......+++++++.-  +.|.|.+..+ ..++...|||+||+.++...      
T Consensus       393 ~~~~~~~~~DPYA~al~~~n~~~~~~~~~~~ks~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~  472 (1111)
T TIGR02102       393 RGGDKVLALDPYAKSLAAWNDATSDDQIKVAKAAFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDL  472 (1111)
T ss_pred             CCCceEEEeChhheEEeccCcccccccCCCCceEEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCccc
Confidence            346677889999999874 210    011235788887521  2488876333 34678899999999765321      


Q ss_pred             --ceEEEeeecccccceeEEeccccccc
Q psy9007          82 --KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 --~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                        ..++|+-++.+ |++|+.||.+++|.
T Consensus       473 ~~~~Gtf~gl~ek-LdYLkeLGVT~I~L  499 (1111)
T TIGR02102       473 TAQFGTFAAFVEK-LDYLQDLGVTHIQL  499 (1111)
T ss_pred             ccCCcCHHHHHHh-HHHHHHcCCCEEEE
Confidence              13789999998 78999999999997

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).

>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type

Probab=95.30  E-value=0.0098  Score=56.50  Aligned_cols=83  Identities=12%  Similarity=0.238  Sum_probs=57.1

Q ss_pred             cceeecCccceEEecCCCCCCceeeEEeCCCCC--CCccccCCC---CC--CCchHHHhhcccceEec-------CCceE
Q psy9007          19 LPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTSSK---PK--KPENLKIYESHVGICTQ-------EQKCA   84 (132)
Q Consensus        19 ~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~--~~Y~f~~~~---p~--~p~~~~IYEaHvg~~~~-------~~~v~   84 (132)
                      +....++||++.+..+..     -+++.++...  ++..|...+   |.  .++...|||+||+-++.       +.+ +
T Consensus       203 ~~~~v~DPYA~als~n~~-----~S~VvDl~~~~~~p~~W~~~~~p~p~~~~~~d~iIYElHVRDFS~~d~s~~~~~r-G  276 (898)
T TIGR02103       203 ETYLVTDPYSVSLSANSE-----YSQVVDLNDPALKPEGWDALAMPKPQLASFADMVLYELHIRDFSANDESVPAELR-G  276 (898)
T ss_pred             CCeEEeCcCcceEcCCCC-----CeEEeCCccccCCCcchhhcccccCCcCCCcccEEEEEeccccccCCCCCCcCcC-c
Confidence            356789999999976532     4677776521  466787554   32  45788999999997652       122 7


Q ss_pred             EEeeeccc------ccceeEEeccccccc
Q psy9007          85 SYEDFVRV------VIPRIVKQGDFNNWN  107 (132)
Q Consensus        85 tF~~wApn------alP~V~~lG~nn~W~  107 (132)
                      +|.-++..      .|+.++.+|.++++.
T Consensus       277 tYla~tE~~t~gi~hLk~L~eLGVThVeL  305 (898)
T TIGR02103       277 KYLAFTAADSAGVQHLKKLADAGVTHLHL  305 (898)
T ss_pred             eeeehhccchhhhHHHHHHHhCCCcEEEE
Confidence            89999875      244555779998876

Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=94.20  E-value=0.081  Score=51.78  Aligned_cols=49  Identities=12%  Similarity=0.104  Sum_probs=37.2

Q ss_pred             ceEEEeeecccccceeEEeccccccccc---ccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNRE---EFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~---~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      ++++|++|||+|. +|.++ .++.|+..   ..+|.....|+|.++|++...|.
T Consensus        23 ~gv~F~v~ap~A~-~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~   74 (1221)
T PRK14510         23 GGVNLALFSGAAE-RVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA   74 (1221)
T ss_pred             CeEEEEEECCCCC-EEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc
Confidence            3589999999999 89887 55566532   35665455799999999988773

>PLN02877 alpha-amylase/limit dextrinase

Probab=88.96  E-value=0.17  Score=48.79  Aligned_cols=83  Identities=16%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             ceeecCccceEEecCCCCCCceeeEEeCCCCC--CCccccC---CCC--CCCchHHHhhcccceEecC-Cc-----eEEE
Q psy9007          20 PISRLSPWATYVTEPPVVGHAYEQRIWNPKPQ--DKHKWTS---SKP--KKPENLKIYESHVGICTQE-QK-----CASY   86 (132)
Q Consensus        20 ~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~--~~Y~f~~---~~p--~~p~~~~IYEaHvg~~~~~-~~-----v~tF   86 (132)
                      ....++||++.+..+..     .+++-++...  ++..|..   ++|  ..++...|||+||+-++.. ..     -++|
T Consensus       291 ~~~v~DPYA~als~ng~-----~S~vvDl~~~~~~p~gW~~~~~~~p~~~~~~D~VIYElHVRDFS~~d~sv~~~~RGty  365 (970)
T PLN02877        291 TCYANDPYARGLSADGR-----RTLLVDLDSDDLKPEGWDNLAKEKPCLLSFSDISIYELHVRDFSANDETVHPDFRGGY  365 (970)
T ss_pred             ccccCCccceEEecCCC-----ceEEECCccccCCChhhhhcccccCccCCCcccEEEEEeccccccCCCCCCcCCCCcc
Confidence            44578999999987532     2334444311  3456764   334  2357889999999876532 11     1789


Q ss_pred             eeeccc---c---cceeEEeccccccc
Q psy9007          87 EDFVRV---V---IPRIVKQGDFNNWN  107 (132)
Q Consensus        87 ~~wApn---a---lP~V~~lG~nn~W~  107 (132)
                      .-|+..   .   |+.++.+|.++++.
T Consensus       366 lgftE~~s~gi~hLk~LkelGVThVeL  392 (970)
T PLN02877        366 LAFTSQDSAGVLHLKKLADAGLTHVHL  392 (970)
T ss_pred             hhhhhhhhhHHHHHHHHHHcCCCEEEe
Confidence            888876   1   33455569998886

>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional

Probab=85.99  E-value=0.25  Score=48.49  Aligned_cols=87  Identities=18%  Similarity=0.263  Sum_probs=53.4

Q ss_pred             eeecCccceEEecCCC-CCCceeeEEeC------------CCC--CCCccccCCCCCC-C-chHHHhhcccceEec-CC-
Q psy9007          21 ISRLSPWATYVTEPPV-VGHAYEQRIWN------------PKP--QDKHKWTSSKPKK-P-ENLKIYESHVGICTQ-EQ-   81 (132)
Q Consensus        21 ~dRip~w~~~v~q~~~-~~~~f~~~~w~------------P~~--~~~Y~f~~~~p~~-p-~~~~IYEaHvg~~~~-~~-   81 (132)
                      -.-++|||+.+.-... ...+|.-++.+            |..  ..+|.|...++.. + +...|||+|++..+. .. 
T Consensus        96 ~~~lDPYA~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~pk~vv~~~~~W~~~~~~~~~~~d~vIYE~hvr~ft~~~~~  175 (1221)
T PRK14510         96 KLLVDPYARPLDRPFWLHQAIFDDRFFNGDEDLTDSAVLVPKVVVPTPFTWAPRSPLHGDWDDSPLYEMNVRGFTLRHDF  175 (1221)
T ss_pred             eEeeCCCCceEeCCcccCcccccccccCCCcccccCcccCccceeecccccCCCCCCCCCcccCeEEEEccchhhccCCC
Confidence            3468899999876321 01122222222            210  0158897766532 2 455699999975532 11 


Q ss_pred             ----ceEEEeeec-ccccceeEEeccccccc
Q psy9007          82 ----KCASYEDFV-RVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ----~v~tF~~wA-pnalP~V~~lG~nn~W~  107 (132)
                          .-++|...+ |..+++++.||.+++|.
T Consensus       176 ~gg~~~Gt~~~l~~~~~i~yLk~LGvt~I~L  206 (1221)
T PRK14510        176 FPGNLRGTFAKLAAPEAISYLKKLGVSIVEL  206 (1221)
T ss_pred             CCcccCcHHhhcCCchhHHHHHHcCCCEEEe
Confidence                127888887 55688999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3aml_A	755	Structure Of The Starch Branching Enzyme I (Bei) Fr		2e-08
3amk_A	702	Structure Of The Starch Branching Enzyme I (Bei) Fr		2e-08

>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 21  ISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           + R+  W  Y T +    G  Y+   W+P   +++ +   +P KP+  +IYE+HVG+  +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193
Query: 80  EQKCASYEDFVRVVIPRIVKQGDFNNWN 107
           E + ++Y +F   V+PRI      NN+N
Sbjct: 194 EPEVSTYREFADNVLPRIRA----NNYN 217

>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 21  ISRLSPWATYVT-EPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQ 79
           + R+  W  Y T +    G  Y+   W+P   +++ +   +P KP+  +IYE+HVG+  +
Sbjct: 134 VDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGE 193
Query: 80  EQKCASYEDFVRVVIPRIVKQGDFNNWN 107
           E + ++Y +F   V+PRI      NN+N
Sbjct: 194 EPEVSTYREFADNVLPRIRA----NNYN 217

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	7e-18
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	2e-07

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755

 Score = 77.4 bits (191), Expect = 7e-18
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)

Query: 23  RLSPWATYVTEPP-VVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQ 81
           R+  W  Y T      G  Y+   W+P   +++ +   +P KP+  +IYE+HVG+  +E 
Sbjct: 136 RIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEP 195

Query: 82  KCASYEDFVRVVIPRIVKQG 101
           + ++Y +F   V+PRI    
Sbjct: 196 EVSTYREFADNVLPRIRANN 215

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 101 GDFNNWNREEFAYKKLDFGKWELVLPP 127
           G+FNNWN  +   +K  FG W + +  
Sbjct: 83  GEFNNWNGAKHKMEKDKFGIWSIKISH 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	99.13
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	98.98
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	98.6
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	98.53
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	98.43
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	98.04
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	97.85
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	97.83
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	97.6
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	97.6
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	97.58
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	97.53
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	97.48
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	97.42
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	97.37
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	97.3
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	97.19
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	97.13
2wsk_A	657	Glycogen debranching enzyme; carbohydrate metaboli	97.13
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	97.01
1wzl_A	585	Alpha-amylase II; pullulan, GH-13, alpha-amylase f	96.88
3vgf_A	558	Malto-oligosyltrehalose trehalohydrolase; alpha/be	96.79
1bf2_A	750	Isoamylase; hydrolase, glycosidase, debranching en	96.78
3m07_A	618	Putative alpha amylase; IDP00968, csgid, structura	96.69
1ji1_A	637	Alpha-amylase I; beta/alpha barrel, hydrolase; 1.6	96.62
1j0h_A	588	Neopullulanase; beta-alpha-barrels, hydrolase; 1.9	96.5
1ea9_C	583	Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A	96.5
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	96.27
2bhu_A	602	Maltooligosyltrehalose trehalohydrolase; alpha-amy	96.18
2vr5_A	718	Glycogen operon protein GLGX; hydrolase, glycosida	96.12
2e8y_A	718	AMYX protein, pullulanase; multiple domain, beta-a	96.05
4aio_A	884	Limit dextrinase; hydrolase, pullulanase, glycosid	95.98
2wan_A	921	Pullulanase; hydrolase, glycoside hydrolase, polys	95.93
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	95.66
2ya0_A	714	Putative alkaline amylopullulanase; hydrolase, gly	95.62
3faw_A	877	Reticulocyte binding protein; TIM barrel, beta bar	94.63
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	94.51
2fhf_A	1083	Pullulanase; multiple domain, beta-alpha-barrel, a	94.48
2ya1_A	1014	Putative alkaline amylopullulanase; hydrolase, gly	94.43
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	93.84
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	90.98

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=99.13  E-value=3.7e-12  Score=115.03  Aligned_cols=96  Identities=25%  Similarity=0.486  Sum_probs=81.8

Q ss_pred             EEEecCCcceeecCccceEEecCCCC-CCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEeeec
Q psy9007          12 TLIFRYLLPISRLSPWATYVTEPPVV-GHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFV   90 (132)
Q Consensus        12 ~~~~~~~~~~dRip~w~~~v~q~~~~-~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~~wA   90 (132)
                      +|....|++++++||||+++++++.. +..|++++|+|+..++|.|++.++++|....|||+|+++++.+++.++|+.++
T Consensus       125 ~i~~~~g~~~~~~dpya~~~~~~~~~~~~~~~~~v~d~~~~~~~~w~~~~~~~~~~~~IYE~hv~~~~~~~~~Gt~~~l~  204 (755)
T 3aml_A          125 RFRHGGGAWVDRIPAWIRYATFDASKFGAPYDGVHWDPPACERYVFKHPRPPKPDAPRIYEAHVGMSGEEPEVSTYREFA  204 (755)
T ss_dssp             EEECTTCCCEEECCTTCSCEEECCSSSSCCEEEEECCCCGGGCCCCCSCCCCCCSSCEEEEEESTTCSSSSSCCCHHHHH
T ss_pred             EEECCCCcEEecCCcchheEeecccccCcccceEEECCcccccCCCCCcCCCCCCCCEEEEEeeeccccCCCCCCHHHHH
Confidence            44444678899999999999998752 45678999999644579999999888888999999999887777678999999


Q ss_pred             ccccceeEEeccccccc
Q psy9007          91 RVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        91 pnalP~V~~lG~nn~W~  107 (132)
                      ...||+|+.+|++++|.
T Consensus       205 ~~~L~yLk~LGvt~I~L  221 (755)
T 3aml_A          205 DNVLPRIRANNYNTVQL  221 (755)
T ss_dssp             HHTHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHcCCCEEEE
Confidence            87799999999999997

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=98.98  E-value=3e-10  Score=102.39  Aligned_cols=67  Identities=25%  Similarity=0.442  Sum_probs=54.1

Q ss_pred             chHHHhh---cccceEecC---CceEEEeeecccccceeEEecccccccccccceeeC-CCCeEEEEcCCCCCCC
Q psy9007          65 ENLKIYE---SHVGICTQE---QKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKL-DFGKWELVLPPNPDGS  132 (132)
Q Consensus        65 ~~~~IYE---aHvg~~~~~---~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~-~~G~We~~ip~~~~G~  132 (132)
                      +++++|+   ||+....+.   .++++|++|||+|. +|.++|+||.|+...+||.+. ++|+|+++||+...|+
T Consensus       113 ~~~~~~~~~gah~~~~~~~~~~~~g~~F~vwAP~A~-~V~l~gdfn~w~~~~~~m~~~~~~GvW~~~i~~~~~g~  186 (722)
T 3k1d_A          113 RHERLWEVLGAHPRSFTTADGVVSGVSFAVWAPNAK-GVSLIGEFNGWNGHEAPMRVLGPSGVWELFWPDFPCDG  186 (722)
T ss_dssp             CCTTGGGTSEEEEEEEECSSSEEEEEEEEEECTTCS-EEEEEEGGGTTCCCSCBCEECGGGCEEEEEEETCCTTC
T ss_pred             cchHHHHhcCCEEEeecCCcCCCceEEEEEECCCCC-EEEEEeecCCCCCCcccCEEcCCCCEEEEEeCCCCCCC
Confidence            5556666   887543321   23589999999999 999999999999888999984 5699999999998884

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=98.60  E-value=2.4e-08  Score=69.18  Aligned_cols=45  Identities=18%  Similarity=0.434  Sum_probs=38.0

Q ss_pred             CceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007          81 QKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        81 ~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      ....+| +|||+|. +|.++|+||+|+  .++|.+. .|+|+++++ ++.|
T Consensus        10 ~~~v~F-~wap~a~-~V~v~GdFn~W~--~~~m~~~-~g~w~~~v~-l~~G   54 (96)
T 1z0n_A           10 ARPTVF-RWTGGGK-EVYLSGSFNNWS--KLPMTRS-QNNFVAILD-LPEG   54 (96)
T ss_dssp             CEEEEE-EECSCCS-CEEEEEGGGTTC--CEECEEE-TTEEEEEEE-ECSE
T ss_pred             ceEEEE-EECCCCc-EEEEEEEeCCCc--cccCEEC-CCEEEEEEE-ccCC
Confidence            334788 9999999 999999999999  7899985 499999996 5555

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=98.53  E-value=8.4e-08  Score=86.70  Aligned_cols=45  Identities=24%  Similarity=0.561  Sum_probs=41.6

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPP  127 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~  127 (132)
                      ++++|++|||+|. +|.++|+||.|+...++|.+.++|+|+++||+
T Consensus        65 ~gv~F~vwAP~A~-~V~l~gdfn~w~~~~~~m~~~~~GvW~~~v~~  109 (755)
T 3aml_A           65 GATIYREWAPAAQ-EAQLIGEFNNWNGAKHKMEKDKFGIWSIKISH  109 (755)
T ss_dssp             TEEEEEEECTTCS-EEEEEEGGGTTCCTTCBCEECTTSEEEEEEEC
T ss_pred             CeEEEEEECCCCC-EEEEEEecCCCCCceeeceeCCCCEEEEEEcc
Confidence            3589999999999 99999999999988899998878999999994

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=98.43  E-value=1.6e-07  Score=82.37  Aligned_cols=64  Identities=20%  Similarity=0.452  Sum_probs=50.4

Q ss_pred             hHHHhhcccceEecCC-ceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          66 NLKIYESHVGICTQEQ-KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        66 ~~~IYEaHvg~~~~~~-~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      .++-+.||..  ...+ ++++|++|||+|. +|.++|+|+.|+...++|.+ .+.|+|+++||+...|.
T Consensus        10 ~~~~lGa~~~--~~~~~~gv~F~vwAP~A~-~V~L~gdfn~~~~~~~~M~~~~~~GvW~~~v~~~~~g~   75 (617)
T 1m7x_A           10 PYETLGAHAD--TMDGVTGTRFSVWAPNAR-RVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQ   75 (617)
T ss_dssp             GGGTSEEEEE--ESSSCEEEEEEEECSSCS-CEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTC
T ss_pred             chhcCCceEe--ccCCcCcEEEEEECCCCC-EEEEEEEeCCCCCceeEeEECCCCCEEEEEEcCCCCCC
Confidence            3344447763  2111 3589999999999 99999999999988899987 56799999999887764

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=98.04  E-value=5.1e-06  Score=71.97  Aligned_cols=45  Identities=4%  Similarity=-0.057  Sum_probs=40.6

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +.+|++|||+|. +|.++++++    ..++|.+.+.|+|++++|+...|+
T Consensus        10 ~~~f~vwap~a~-~v~l~~~~~----~~~~m~~~~~g~w~~~~~~~~~g~   54 (558)
T 3vgf_A           10 EVIFTLWAPYQK-SVKLKVLEK----GLYEMERDEKGYFTITLNNVKVRD   54 (558)
T ss_dssp             EEEEEEECTTCS-CCEEEETTT----EEEECEECTTCEEEEEESSCCTTC
T ss_pred             cEEEEEECCCCC-EEEEEEecC----ceeecccCCCCEEEEEECCCCCCC
Confidence            589999999999 999999987    578999877899999999988874

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=97.85  E-value=8.4e-06  Score=72.28  Aligned_cols=49  Identities=12%  Similarity=-0.027  Sum_probs=39.7

Q ss_pred             eEEEeeecccccceeEEeccccccccc-ccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNRE-EFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~-~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.+++|++.|+.. +.+|.+.++|+|++++|+...|.
T Consensus       137 g~~F~vwAp~A~-~V~l~l~~~~~~~~~~~~~~~~~~g~W~~~~~~~~~g~  186 (884)
T 4aio_A          137 SVSLHLWAPTAQ-GVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENR  186 (884)
T ss_dssp             EEEEEEECTTCS-EEEEEEESTTTSCEEEEEECEEETTEEEEEEEGGGTTC
T ss_pred             EEEEEEECCCCC-EEEEEEEeCCCCCeeeeeeecCCCCEEEEEECCCCCCC
Confidence            489999999999 99999998877643 34444556799999999988773

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=97.83  E-value=1.5e-05  Score=71.10  Aligned_cols=50  Identities=10%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      .+++|++|||+|. +|.++++++.|....++|.+.+.|+|+++||+...|.
T Consensus       113 ~~~~f~vwap~a~-~V~l~~~~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~  162 (718)
T 2e8y_A          113 DHTVFKVWAPAAT-SAAVKLSHPNKSGRTFQMTRLEKGVYAVTVTGDLHGY  162 (718)
T ss_dssp             SEEEEEEECTTCS-EEEEEEECTTSCCEEEECEECGGGEEEEEEESCCTTC
T ss_pred             CcEEEEEECCCCC-EEEEEEEcCCCcceEEeCccCCCCEEEEEECCCCCCC
Confidence            3589999999999 9999999988887789999877799999999877763

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=97.60  E-value=2.1e-06  Score=75.18  Aligned_cols=88  Identities=16%  Similarity=0.103  Sum_probs=67.4

Q ss_pred             EEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCC----CCCchHHHhhcccceEecC---CceEE
Q psy9007          13 LIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKP----KKPENLKIYESHVGICTQE---QKCAS   85 (132)
Q Consensus        13 ~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p----~~p~~~~IYEaHvg~~~~~---~~v~t   85 (132)
                      |....|+..++++||++.+..++. +   .++++++.   +|.|++...    ...+...|||+|++.++..   +..++
T Consensus        81 i~~~~g~~~~~~DPya~~~~~~~~-~---~s~v~~~~---~~~W~~~~~~~~~~~~~~~~iYei~~~~f~~~~~~g~~g~  153 (617)
T 1m7x_A           81 MIDANGNLRLKSDPYAFEAQMRPE-T---ASLICGLP---EKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLS  153 (617)
T ss_dssp             EECTTSCEEEECCTTCSSEECTTT-C---EEECCCCC---CCCCCCHHHHHHHSTTSCCEEEEECTTSSCBCTTTCCBCC
T ss_pred             EEcCCCcEEEecCccceeeccCCC-c---eEEEeCCC---CCCCCCccccCCCcccCCcEEEEEEHHHhcCCCCCCCccC
Confidence            333456677899999999998654 3   68899874   499987541    1235678999999987543   32579


Q ss_pred             EeeecccccceeEEeccccccc
Q psy9007          86 YEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        86 F~~wApnalP~V~~lG~nn~W~  107 (132)
                      |+..+..++|+++.+|++++|.
T Consensus       154 ~~~i~~~ll~yl~~lGv~~i~l  175 (617)
T 1m7x_A          154 YRELADQLVPYAKWMGFTHLEL  175 (617)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCEEEe
Confidence            9999999769999999999997

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=97.60  E-value=5.9e-05  Score=66.48  Aligned_cols=45  Identities=7%  Similarity=0.040  Sum_probs=38.4

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      ++++|++|||+|. +|.++++   +  ..++|.+.++|+|++++|+...|+
T Consensus        42 ~~~~F~vwap~a~-~v~l~~~---~--~~~~m~~~~~g~~~~~~~~~~~g~   86 (618)
T 3m07_A           42 DVVRFRLWATGQQ-KVMLRLA---G--KDQEMQANGDGWFTLDVAGVTPGT   86 (618)
T ss_dssp             TEEEEEEECTTCS-CEEEEET---T--EEEECEECSTTEEEEEEETCCTTC
T ss_pred             CcEEEEEECCCCC-EEEEEEC---C--CcccCeecCCEEEEEEeCCCCCCC
Confidence            3589999999999 9999983   2  368999877899999999988874

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=97.58  E-value=5.4e-05  Score=66.86  Aligned_cols=50  Identities=14%  Similarity=0.068  Sum_probs=39.9

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      .+.+|++|||+|. +|.+++++.......++|.+.+.|+|+++||+...|+
T Consensus        19 ~g~~F~vwap~A~-~V~l~~f~~~~~~~~~~m~~~~~g~w~~~v~~~~~g~   68 (657)
T 2wsk_A           19 QGVNFTLFSAHAE-RVELCVFDANGQEHRYDLPGHSGDIWHGYLPDARPGL   68 (657)
T ss_dssp             SEEEEEEECSSCS-EEEEEEECTTCCEEEEECCEEETTEEEEEEETCCTTC
T ss_pred             CeEEEEEECCCCC-EEEEEEECCCCCEEEEeCcCCCCCEEEEEECCCCCCC
Confidence            3589999999999 9999996542112468998766799999999988874

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=97.53  E-value=2.7e-06  Score=76.74  Aligned_cols=87  Identities=22%  Similarity=0.245  Sum_probs=66.6

Q ss_pred             eeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCC-----C---CCCchHHHhhcccceEecCC
Q psy9007          10 TRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-----P---KKPENLKIYESHVGICTQEQ   81 (132)
Q Consensus        10 ~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~-----p---~~p~~~~IYEaHvg~~~~~~   81 (132)
                      |=.|....|+.+++++|||+.+..++. +   .++++++.    |.|+...     +   ..++.+.|||+|++..+.. 
T Consensus       189 ~y~i~~~~g~~~~~~DPya~~~~~~~~-~---~s~v~~~~----~~w~d~~w~~~~~~~~~~~~~~~IYE~h~~s~~~~-  259 (722)
T 3k1d_A          189 KFRVHGADGVVTDRADPFAFGTEVPPQ-T---ASRVTSSD----YTWGDDDWMAGRALRNPVNEAMSTYEVHLGSWRPG-  259 (722)
T ss_dssp             EEEEECTTSCEEEECCTTCSSBCCTTC-C---CEECCCCC----CCCSCHHHHHHHTTCCGGGSCCEEEEECTTTSSTT-
T ss_pred             EEEEEcCCCcEEEeecccceeeccCCC-c---ceEEeCCC----CCCCchHHhhhccccccCCCCeEEEEEehhhccCC-
Confidence            334444567888999999999988664 3   57888754    8887642     2   2235679999999976652 


Q ss_pred             ceEEEeeecccccceeEEeccccccc
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                        ++|+..+...+|+++.+|++++|.
T Consensus       260 --G~~~~l~~~l~~yLk~lG~t~I~L  283 (722)
T 3k1d_A          260 --LSYRQLARELTDYIVDQGFTHVEL  283 (722)
T ss_dssp             --CCHHHHHHHHHHHHHHHTCSEEEE
T ss_pred             --CCHHHHHHHHHHHHHHcCCCeEEE
Confidence              689999999769999999999996

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=97.48  E-value=9.7e-05  Score=66.04  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=39.9

Q ss_pred             ceEEEeeecccccceeEEeccccccc---ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~---~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      .+++|++|||+|. +|.+++++....   ...++|.+.+.|+|+++||+...|.
T Consensus        29 ~g~~F~vwap~A~-~V~l~lf~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~   81 (718)
T 2vr5_A           29 DGVNFSLFSENAE-KVELLLYSLTNQKYPKEIIEVKNKTGDIWHVFVPGLRPGQ   81 (718)
T ss_dssp             TEEEEEEECSSCS-EEEEEECCSSCCSSCSEEEEECEESSSEEEEEEETCCTTC
T ss_pred             CeEEEEEECCCCC-EEEEEEEcCCCCCCcceEEeCccCCCCEEEEEeCCCCCCC
Confidence            3589999999999 999999654211   2468998766799999999988774

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=97.42  E-value=0.00014  Score=68.26  Aligned_cols=50  Identities=6%  Similarity=0.045  Sum_probs=42.5

Q ss_pred             ceEEEeeecccccceeEEecc-cccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGD-FNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~-nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      ++.+|++|||+|. +|.+++| ++.|....++|.+ .+.|+|++++|+...|.
T Consensus       304 ~gv~F~vwAP~A~-~V~L~l~d~~~~~~~~~~m~~~~~~GvW~~~v~~~~~G~  355 (1083)
T 2fhf_A          304 SGVTFRVWAPTAQ-QVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGA  355 (1083)
T ss_dssp             TEEEEEEECTTCS-EEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTC
T ss_pred             CeEEEEEECCCCC-EEEEEEEcCCCCccceEECeECCCCCEEEEEECCCCCCC
Confidence            3589999999999 9999995 7788766799986 56799999999887774

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=97.37  E-value=0.00016  Score=66.42  Aligned_cols=49  Identities=16%  Similarity=0.293  Sum_probs=40.5

Q ss_pred             ceEEEeeecccccceeEEeccccccc---ccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWN---REEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~---~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      .+.+|++|||+|. +|.+++ |+.|+   ...++|.+.+.|+|+++||+...|.
T Consensus       325 ~gv~F~vwaP~A~-~V~l~l-f~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~  376 (921)
T 2wan_A          325 DATSFRVWAPTAS-NVQLLL-YNSEKGSITKQLEMQKSDNGTWKLQVSGNLENW  376 (921)
T ss_dssp             SEEEEEEECTTCS-EEEEEE-ESSSSSCCSEEEECEECGGGEEEEEEESCCTTC
T ss_pred             CeEEEEEECCCCC-EEEEEE-EeCCCCCcCeEEeCeeCCCCEEEEEEccCCCCC
Confidence            3589999999999 999998 45664   3569999876799999999887763

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=97.30  E-value=0.00027  Score=62.94  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=37.2

Q ss_pred             eEEEeeecccccceeEEecc-cccccc--cccceeeCCCCeEEEEcCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGD-FNNWNR--EEFAYKKLDFGKWELVLPP  127 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~-nn~W~~--~~~~m~~~~~G~We~~ip~  127 (132)
                      +++|++|||+|. +|.++++ ++.|..  ..++|.+.+.|+|+++||+
T Consensus        25 gv~F~vwap~A~-~V~l~l~~~~~~~~~~~~~~m~~~~~gvW~~~v~~   71 (714)
T 2ya0_A           25 QVDLTLWSPSAD-KVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDS   71 (714)
T ss_dssp             EEEEEEECTTCS-EEEEEEECSSCTTSEEEEEECEECGGGEEEEEECT
T ss_pred             EEEEEEECCCCC-EEEEEEEeCCCCCccceEEeCccCCCCEEEEEECC
Confidence            489999999999 9999995 666753  4689988767999999986

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=97.19  E-value=0.0002  Score=64.37  Aligned_cols=44  Identities=14%  Similarity=0.212  Sum_probs=36.3

Q ss_pred             EEEeeecccccceeEEecccccccc----cccceeeCCCCeEEEEcCCCC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNR----EEFAYKKLDFGKWELVLPPNP  129 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~----~~~~m~~~~~G~We~~ip~~~  129 (132)
                      ++|++|||+|. +|.+++++ .|+.    ..++|.+.+.|+|+++||+..
T Consensus        18 ~~F~vwap~A~-~V~l~l~~-~~~~~~~~~~~~m~~~~~gvW~~~v~~~~   65 (750)
T 1bf2_A           18 ITFRVYSSQAT-RIVLYLYS-AGYGVQESATYTLSPAGSGVWAVTVPVSS   65 (750)
T ss_dssp             EEEEEECSSCS-EEEEEEES-SSSSCCCSEEEECEECSTTEEEEEEEHHH
T ss_pred             EEEEEECCCCC-EEEEEEEc-cCCCCccceEEecccCCCCEEEEEECCcc
Confidence            89999999999 99999954 3332    468998876799999999765

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=97.13  E-value=0.00039  Score=60.90  Aligned_cols=43  Identities=19%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.++|+     ...++|.+.+.|+|+++|| ...|+
T Consensus        35 ~~~f~vwap~a~-~v~l~~~-----~~~~~m~~~~~g~w~~~~~-~~~g~   77 (602)
T 2bhu_A           35 GTRFRLWTSTAR-TVAVRVN-----GTEHVMTSLGGGIYELELP-VGPGA   77 (602)
T ss_dssp             CEEEEEECSSCS-SEEEEET-----TEEEECEEEETTEEEEEES-CCTTC
T ss_pred             eEEEEEECCCCC-EEEEEEc-----CCEEeCeeCCCcEEEEEEE-CCCCc
Confidence            489999999999 9999996     2478998877799999999 77663

>2wsk_A Glycogen debranching enzyme; carbohydrate metabolism, hydrolase, glycosidase, ISO-amylase glycosyl hydrolase, glycogen metabolism; 2.25A {Escherichia coli k-12}

Probab=97.13  E-value=1.4e-05  Score=70.71  Aligned_cols=82  Identities=18%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             eecCccceEEecCCCC-----------------CCceeeEEeCCCCCCCccccCCCCCC-C-chHHHhhcccceEec-CC
Q psy9007          22 SRLSPWATYVTEPPVV-----------------GHAYEQRIWNPKPQDKHKWTSSKPKK-P-ENLKIYESHVGICTQ-EQ   81 (132)
Q Consensus        22 dRip~w~~~v~q~~~~-----------------~~~f~~~~w~P~~~~~Y~f~~~~p~~-p-~~~~IYEaHvg~~~~-~~   81 (132)
                      .+++|||+.+..+..-                 .....++|++|+    |.|++.+++. + +...|||+|++.++. .+
T Consensus        91 ~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~d~~----~~W~~~~~~~~~~~~~vIYei~v~~F~~~~~  166 (657)
T 2wsk_A           91 LLIDPCARQIDGEFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDH----YDWEDDAPPRTPWGSTIIYEAHVKGLTYLHP  166 (657)
T ss_dssp             CBCCTTCSCEESCCCCCGGGBCCSSSCCCCCCGGGSCEEECCCCC----CCCTTCCCCCCCGGGCCEEEECHHHHHTTCT
T ss_pred             EEcCcCcceecCCccccccccccccccccccccccccceEEeCCC----CCCCCCCCCCCCchhcEEEEEEcceeeccCC
Confidence            6899999999875210                 112368999986    9999987643 2 677899999976543 11


Q ss_pred             -----ceEEEeeeccc-ccceeEEeccccccc
Q psy9007          82 -----KCASYEDFVRV-VIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 -----~v~tF~~wApn-alP~V~~lG~nn~W~  107 (132)
                           +.++|+.++.. .||+|+.+|++++|.
T Consensus       167 ~~~~~~~G~~~gi~~~~~l~yL~~LGvt~i~L  198 (657)
T 2wsk_A          167 EIPVEIRGTYKALGHPVMINYLKQLGITALEL  198 (657)
T ss_dssp             TSCGGGTTSHHHHTSHHHHHHHHHHTCCEEEE
T ss_pred             CCCccCCcCHHHHhcccchHHHHHcCCCEEEE
Confidence                 24789999987 688999999999997

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=97.01  E-value=0.00062  Score=63.34  Aligned_cols=44  Identities=14%  Similarity=0.112  Sum_probs=37.3

Q ss_pred             eEEEeeecccccceeEEecc-cccccc--cccceeeCCCCeEEEEcCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGD-FNNWNR--EEFAYKKLDFGKWELVLPP  127 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~-nn~W~~--~~~~m~~~~~G~We~~ip~  127 (132)
                      +++|++|||+|. +|.++++ ++.|+.  ..++|.+.+.|+|+++||+
T Consensus       332 gv~F~vwAP~A~-~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~~  378 (1014)
T 2ya1_A          332 QVDLTLWSPSAD-KVSVVVYDKNDPDKVVGTVALEKGERGTWKQTLDS  378 (1014)
T ss_dssp             EEEEEEECTTCS-EEEEEEECSSCTTSEEEEEECEECGGGEEEEEECT
T ss_pred             EEEEEEECCCCC-EEEEEEEECCCCCccceEEecccCCCCEEEEEEcc
Confidence            479999999999 9999995 666753  4689988767999999986

>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase; 2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A* 1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A* 1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A

Probab=96.88  E-value=0.00076  Score=58.37  Aligned_cols=47  Identities=15%  Similarity=0.018  Sum_probs=39.3

Q ss_pred             EEEeeecccccceeEE-ecccccccc---cccceeeC-C---CCeEEEEcCCCCCC
Q psy9007          84 ASYEDFVRVVIPRIVK-QGDFNNWNR---EEFAYKKL-D---FGKWELVLPPNPDG  131 (132)
Q Consensus        84 ~tF~~wApnalP~V~~-lG~nn~W~~---~~~~m~~~-~---~G~We~~ip~~~~G  131 (132)
                      .+|++|||+|. +|.+ +|+++.|+.   ..++|.+. .   +|+|+++||+...|
T Consensus        25 i~~~~~~~~a~-~V~l~~~d~~~~~~~~~~~~~m~~~~~~~~~~~w~~~i~~~~~~   79 (585)
T 1wzl_A           25 VRLRAKKGDVV-RCEVLYADRYASPEEELAHALAGKAGSDERFDYFEALLECSTKR   79 (585)
T ss_dssp             EEEEEETTTCS-EEEEEEECTTCCTTSCCEEEECEEEEECSSEEEEEEEEECTTSC
T ss_pred             EEEEECCCCcc-EEEEEECCCcCCCCCceEEEEEEEeecCCCEEEEEEEEECCCCe
Confidence            68999999998 9999 899999985   67999873 2   35699999987665

>3vgf_A Malto-oligosyltrehalose trehalohydrolase; alpha/beta barrel, alpha-amylas hydrolase; HET: GLC FLC; 2.30A {Sulfolobus solfataricus} PDB: 3vge_A* 3vgd_A* 3vgb_A* 1eh9_A* 3vgh_A* 3vgg_A* 1eha_A

Probab=96.79  E-value=6.9e-05  Score=64.86  Aligned_cols=75  Identities=25%  Similarity=0.301  Sum_probs=58.5

Q ss_pred             eeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecCCceEEEeeecccccceeEEe
Q psy9007          21 ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQ  100 (132)
Q Consensus        21 ~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~l  100 (132)
                      ....+||+++....+. +   .+++++|.    |.|++..+...+...|||+|++.++.+   ++|+..+.. ||+|+.+
T Consensus        64 ~~~~DP~~~~~~~~~~-~---~s~v~d~~----~~w~~~~~~~~~~~~iYe~~~~~f~~~---G~~~~~~~~-l~~l~~l  131 (558)
T 3vgf_A           64 SEIPDPASRYQPEGVH-G---PSQIIQES----KEFNNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDL  131 (558)
T ss_dssp             CEECCTTCSCCTTCTT-S---CEECCCCC----CCCCSSCCCCGGGCCEEEECHHHHSSS---CSHHHHHHT-HHHHHHH
T ss_pred             ccccCcchhhcccCCC-C---cccccCCC----cCcccccCCCccccEEEEEeHHHhCCC---CCHHHHHHH-HHHHHHc
Confidence            5678899986433332 3   57899986    999988744457789999999987653   479998887 7899999


Q ss_pred             ccccccc
Q psy9007         101 GDFNNWN  107 (132)
Q Consensus       101 G~nn~W~  107 (132)
                      |++++|.
T Consensus       132 G~~~v~l  138 (558)
T 3vgf_A          132 GITAIEI  138 (558)
T ss_dssp             TCCEEEE
T ss_pred             CCcEEEE
Confidence            9999997

>1bf2_A Isoamylase; hydrolase, glycosidase, debranching enzyme; 2.00A {Pseudomonas amyloderamosa} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.78  E-value=4.4e-05  Score=68.55  Aligned_cols=81  Identities=21%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             eecCccceEEecCCCCC-----Cc----------------eeeEEeCCCCCCCccccCCCCCCC-chHHHhhcccceEec
Q psy9007          22 SRLSPWATYVTEPPVVG-----HA----------------YEQRIWNPKPQDKHKWTSSKPKKP-ENLKIYESHVGICTQ   79 (132)
Q Consensus        22 dRip~w~~~v~q~~~~~-----~~----------------f~~~~w~P~~~~~Y~f~~~~p~~p-~~~~IYEaHvg~~~~   79 (132)
                      ..++|||+.+..+++..     ..                ..+++++|.    |.|++.+|..+ +...|||+|++.++.
T Consensus       116 ~~~DPya~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~s~v~~~~----~~W~d~~~~~~~~~~vIYe~hv~~f~~  191 (750)
T 1bf2_A          116 LLLDPYAQEVSQDPLNPSNQNGNVFASGASYRTTDSGIYAPKGVVLVPS----TQSTGTKPTRAQKDDVIYEVHVRGFTE  191 (750)
T ss_dssp             CBCCTTCSCBSCCSSCSSCCCGGGGBCSTTTTTCCCTTTSCCEECCCCC----CCCCCCCCCCCGGGCCEEEECHHHHHT
T ss_pred             eecCcCcceeccCCCCcccccccccccccccccccccccccceEEeCCC----CCCCcCCCCCCccccEEEEEEhhHhhC
Confidence            57899999998654311     11                248899886    99996555444 678999999985533


Q ss_pred             -CC-----ceEEEeeecccccceeEEeccccccc
Q psy9007          80 -EQ-----KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        80 -~~-----~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                       .+     ..++|+.++.. ||+|+.+|.+++|.
T Consensus       192 ~~~~~~~~~~Gt~~gl~~~-l~yLk~LGvt~V~L  224 (750)
T 1bf2_A          192 QDTSIPAQYRGTYYGAGLK-ASYLASLGVTAVEF  224 (750)
T ss_dssp             TCTTSCGGGTTSHHHHHHT-HHHHHHHTCCEEEE
T ss_pred             cCCCCCccCCcCHHHHHHH-HHHHHHcCCCEEEE
Confidence             11     23789999998 78999999999997

>3m07_A Putative alpha amylase; IDP00968, csgid, structural genomics, center for structural genomics of infectious diseases, unknown function; HET: BTB PG4 PGE; 1.40A {Salmonella enterica subsp}

Probab=96.69  E-value=8.8e-05  Score=65.39  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=60.4

Q ss_pred             eeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCC-CC-chHHHhhcccceEecCCceEEEeeecccccceeE
Q psy9007          21 ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPK-KP-ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIV   98 (132)
Q Consensus        21 ~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~-~p-~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~   98 (132)
                      ...++||++.+...+. +   .+++++|.   .|.|++..+. +| +...|||+|++..+.+   ++|+..+.. ||+++
T Consensus        96 ~~~~DP~a~~~~~~~~-~---~s~v~d~~---~~~w~~~~~~~~~~~~~~iYe~~v~~f~~~---G~~~~~~~~-L~yl~  164 (618)
T 3m07_A           96 MVVPDPASRAQKTDVN-G---PSYVVDPG---SYTWRNTGWKGSRWEQAVVYEMHTGTFTPE---GTFRAAIAK-LPYLA  164 (618)
T ss_dssp             CEECCTTCSCBSSSTT-S---CEECCCTT---SSCCSCTTCCCCCGGGCCEEEECHHHHSSS---CSHHHHHTT-HHHHH
T ss_pred             eEeccccceeeecCCC-C---CEEEEcCc---cCCCCCccccCCChhhCeEEEEehhhcCCC---CCHHHHHHH-HHHHH
Confidence            4567899998766554 4   47899985   5999998764 23 6778999999977653   479999987 68999


Q ss_pred             Eeccccccc
Q psy9007          99 KQGDFNNWN  107 (132)
Q Consensus        99 ~lG~nn~W~  107 (132)
                      .+|++++|.
T Consensus       165 ~lGv~~v~l  173 (618)
T 3m07_A          165 ELGVTVIEV  173 (618)
T ss_dssp             HHTCCEEEE
T ss_pred             HcCCCEEEe
Confidence            999999997

>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A {Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A* 2d0g_A* 2d0h_A* 1izk_A

Probab=96.62  E-value=0.0016  Score=56.89  Aligned_cols=47  Identities=13%  Similarity=0.045  Sum_probs=38.2

Q ss_pred             eEEEeee----cccccceeEEecccccccccccceee--C----CCCeEEEEcCCCCCC
Q psy9007          83 CASYEDF----VRVVIPRIVKQGDFNNWNREEFAYKK--L----DFGKWELVLPPNPDG  131 (132)
Q Consensus        83 v~tF~~w----ApnalP~V~~lG~nn~W~~~~~~m~~--~----~~G~We~~ip~~~~G  131 (132)
                      +++|++|    ||+|. +|.++++++. +...++|.+  .    .+|+|+++||+...|
T Consensus        31 ~v~f~v~~~~~ap~a~-~V~l~~~~~~-~~~~~~m~~~~~~~~~~~~~w~~~i~~~~~g   87 (637)
T 1ji1_A           31 SVTLKLRTFKGDITSA-NIKYWDTADN-AFHWVPMVWDSNDPTGTFDYWKGTIPASPSI   87 (637)
T ss_dssp             CEEEEEEEETTCCSEE-EEEEEETTTT-EEEEEECEEEEECTTSSEEEEEEEECCCSSC
T ss_pred             EEEEEEEEecCcCCee-EEEEEEecCC-CEEEEEeEEeeccccCCeeEEEEEEECCCce
Confidence            4899999    99999 9999999764 444689987  2    348999999987766

>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*

Probab=96.50  E-value=0.0017  Score=56.17  Aligned_cols=47  Identities=17%  Similarity=0.291  Sum_probs=38.7

Q ss_pred             EEEeeecccccceeEE-ecccccccc-----cccceeeC-C---CCeEEEEcCCCCCC
Q psy9007          84 ASYEDFVRVVIPRIVK-QGDFNNWNR-----EEFAYKKL-D---FGKWELVLPPNPDG  131 (132)
Q Consensus        84 ~tF~~wApnalP~V~~-lG~nn~W~~-----~~~~m~~~-~---~G~We~~ip~~~~G  131 (132)
                      .+|++|+|+|. +|.+ +|+++.|+.     ..++|.+. +   .|.|+++||+...|
T Consensus        25 i~~~~~~~~a~-~V~l~~~d~~~~~~~~~~~~~~~m~~~~~~~~~~~w~~~v~~~~~~   81 (588)
T 1j0h_A           25 LRLRTKKDDID-RVELLHGDPYDWQNGAWQFQMMPMRKTGSDELFDYWFAEVKPPYRR   81 (588)
T ss_dssp             EEEEEETTTCS-EEEEEEECTTCEETTEECCEEEECEEEEECSSEEEEEEEECCTTSC
T ss_pred             EEEEECCCCcc-EEEEEECCCCCccccccceEEEEeEEeecCCCeEEEEEEEECCCcE
Confidence            78999999998 9999 799998875     57899873 2   35799999987665

>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP} SCOP: b.1.18.2 b.71.1.1 c.1.8.1

Probab=96.50  E-value=0.00088  Score=58.05  Aligned_cols=47  Identities=19%  Similarity=0.286  Sum_probs=39.1

Q ss_pred             EEEeeecccccceeEE-ecccccccc--cccceee-CC---CCeEEEEcCCCCCC
Q psy9007          84 ASYEDFVRVVIPRIVK-QGDFNNWNR--EEFAYKK-LD---FGKWELVLPPNPDG  131 (132)
Q Consensus        84 ~tF~~wApnalP~V~~-lG~nn~W~~--~~~~m~~-~~---~G~We~~ip~~~~G  131 (132)
                      .+|++|||+|. +|.+ +|+++.|+.  ..++|.+ .+   +|+|+++||+...|
T Consensus        25 ~~~~~~~~~a~-~V~l~~~d~~~~~~~~~~~~M~~~~~~~~~~~w~~~i~~~~~~   78 (583)
T 1ea9_C           25 LRIRTKKDDMT-AVYALAGDKYMWDHTMEYVPMTKLATDELFDYWECEVTPPYRR   78 (583)
T ss_dssp             CCCEECTTCCS-BEEEEEECSSSCTTTCEEEEECEEEECSSCEEECCEECCTTSC
T ss_pred             EEEEECCCCcc-EEEEEECCCcCCCCcEEEEEEEEEeccCCeEEEEEEEECCCce
Confidence            67899999998 9999 799999986  6799986 33   35699999987665

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=96.27  E-value=0.0039  Score=57.36  Aligned_cols=57  Identities=16%  Similarity=0.165  Sum_probs=40.9

Q ss_pred             HhhcccceEecCCc-eEEEeeecccccceeEEecc-cccccc--cccceeeCCCCeEEEEcC
Q psy9007          69 IYESHVGICTQEQK-CASYEDFVRVVIPRIVKQGD-FNNWNR--EEFAYKKLDFGKWELVLP  126 (132)
Q Consensus        69 IYEaHvg~~~~~~~-v~tF~~wApnalP~V~~lG~-nn~W~~--~~~~m~~~~~G~We~~ip  126 (132)
                      .|..-.|..-...+ +++|++|||+|. +|.+++| ++.|..  ..++|.+.+.|+|+++|+
T Consensus       130 ~y~g~lGa~~~~~g~~v~F~vwAP~A~-~V~L~l~d~~~~~~~~~~~~m~~~~~gvW~~~v~  190 (877)
T 3faw_A          130 AYSGNLGAVLNQDGSKVEASLWSPSAD-SVTMIIYDKDNQNRVVATTPLVKNNKGVWQTILD  190 (877)
T ss_dssp             CCCSCCEEEECTTSSCEEEEEECTTCS-EEEEEEEETTEEEEEEEEEECEECTTSEEEEEEC
T ss_pred             CCCCCCCCEEeCCCCEEEEEEECCCCC-EEEEEEEeCCCCccceeeeccccCCCCEEEEEEC
Confidence            44444453322222 279999999999 9999996 555642  468998877899999995

>2bhu_A Maltooligosyltrehalose trehalohydrolase; alpha-amylase, protein-carbohydrate complex, desiccation resistance; HET: TRS PGE; 1.1A {Deinococcus radiodurans} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 2bhy_A* 2bhz_A* 2bxy_A* 2bxz_A* 2by0_A* 2by1_A* 2by2_A* 2by3_A*

Probab=96.18  E-value=0.00023  Score=62.39  Aligned_cols=76  Identities=20%  Similarity=0.321  Sum_probs=60.1

Q ss_pred             eeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCC--CchHHHhhcccceEecCCceEEEeeecccccceeE
Q psy9007          21 ISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKK--PENLKIYESHVGICTQEQKCASYEDFVRVVIPRIV   98 (132)
Q Consensus        21 ~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~--p~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~   98 (132)
                      ..+++||++.+.+... +   .+++++|.   .|.|+++.+..  .+...|||+|++.++.   .++|+..+.. |++++
T Consensus        86 ~~~~DPya~~~~~~~~-~---~s~v~d~~---~~~w~~~~w~~~~~~~~viYei~~~~f~~---~G~~~gi~~~-L~yl~  154 (602)
T 2bhu_A           86 VPTPDPYARFLPDGVH-G---EAEVVDFG---TFDWTDADWHGIKLADCVFYEVHVGTFTP---EGTYRAAAEK-LPYLK  154 (602)
T ss_dssp             EEECCTTCSCCTTCTT-S---CEECCCTT---SSCCCCTTCCCCCGGGCCEEEECHHHHSS---SCSHHHHHHT-HHHHH
T ss_pred             eEecCCCccccCCCCC-C---CEEEeccc---ccCCCccccccCCcccceEEEEeeccccc---CCCHHHHHHH-HHHHH
Confidence            6789999998865443 3   47889985   59999887632  3678899999987764   3578888877 78999


Q ss_pred             Eeccccccc
Q psy9007          99 KQGDFNNWN  107 (132)
Q Consensus        99 ~lG~nn~W~  107 (132)
                      .+|.+++|.
T Consensus       155 ~lGv~~I~L  163 (602)
T 2bhu_A          155 ELGVTAIQV  163 (602)
T ss_dssp             HHTCCEEEE
T ss_pred             HcCCCEEEE
Confidence            999999997

>2vr5_A Glycogen operon protein GLGX; hydrolase, glycosidase, glycosyl hydrolase, glycogen debraching; HET: GLC A16; 2.8A {Sulfolobus solfataricus} PDB: 2vnc_A* 2vuy_A

Probab=96.12  E-value=0.00019  Score=64.12  Aligned_cols=82  Identities=21%  Similarity=0.254  Sum_probs=59.5

Q ss_pred             eecCccceEEecCCC------------------------CCCceeeEEeCCCCCCCccccCC---CCC-C-CchHHHhhc
Q psy9007          22 SRLSPWATYVTEPPV------------------------VGHAYEQRIWNPKPQDKHKWTSS---KPK-K-PENLKIYES   72 (132)
Q Consensus        22 dRip~w~~~v~q~~~------------------------~~~~f~~~~w~P~~~~~Y~f~~~---~p~-~-p~~~~IYEa   72 (132)
                      ..++|||+.+..+..                        ......++|++|.    |.|++.   +++ . .+...|||+
T Consensus       104 ~~~DPya~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~s~v~d~~----~~W~~~~~~~~~~~~~~~~vIYei  179 (718)
T 2vr5_A          104 VLIDPYAKAINGSVIWNDAVFGYKIGDQNQDLTYDERDSGEYVPKSVVINPY----FEWDDEDFIKGKKVPLKDTVIYEV  179 (718)
T ss_dssp             CBCCTTCSCBCSCCCCCGGGSSSCSSCTTTTTSCCCCCCTTTSCCEECCCCC----CCCTTGGGGSSSCCCTTSCCEEEE
T ss_pred             eEcCcCccccccCccccccccccccCCcccccccccccccccccceEEecCC----cCCCccccccCCCCChhHCEEEEE
Confidence            568999999884311                        0112368899875    999987   442 2 266889999


Q ss_pred             ccceEec-C-----CceEEEeeeccc-ccceeEEeccccccc
Q psy9007          73 HVGICTQ-E-----QKCASYEDFVRV-VIPRIVKQGDFNNWN  107 (132)
Q Consensus        73 Hvg~~~~-~-----~~v~tF~~wApn-alP~V~~lG~nn~W~  107 (132)
                      |++.++. .     ...++|+.++.. .||+|+.+|++++|.
T Consensus       180 hv~~f~~~~~~~~~~~~Gt~~gi~~~~~l~yLk~LGvt~I~L  221 (718)
T 2vr5_A          180 HVKGFTKLRLDLPENIRGTYEGLASEQMISYLKDLGITTVEL  221 (718)
T ss_dssp             CTTTTTTTCTTSCTTSTTSHHHHTSHHHHHHHHHHTCCEEEE
T ss_pred             EcchhhcCCCCCCcccCcCHHHHhcchhhHHHHHcCCCeEEE
Confidence            9986543 1     124789999986 688999999999997

>2e8y_A AMYX protein, pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, HY; 2.11A {Bacillus subtilis} PDB: 2e8z_A* 2e9b_A*

Probab=96.05  E-value=0.00031  Score=62.59  Aligned_cols=85  Identities=13%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             CCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCCCCCCchHHHhhcccceEecC--Cce---EEEeeecc
Q psy9007          17 YLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSKPKKPENLKIYESHVGICTQE--QKC---ASYEDFVR   91 (132)
Q Consensus        17 ~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~p~~p~~~~IYEaHvg~~~~~--~~v---~tF~~wAp   91 (132)
                      .|++..+++||++.+..+..     .+++.++..-++..| .+.+..++...|||+|++.++..  .++   ++|+-++.
T Consensus       171 ~g~~~~~~DPya~~~~~~~~-----~s~v~d~~~~~~~~w-~~~~~~~~~~viYei~v~~F~~~~~~g~~~~G~~~g~~e  244 (718)
T 2e8y_A          171 NSEWMETVDQYAKAVTVNGE-----KGVVLRPDQMKWTAP-LKPFSHPVDAVIYETHLRDFSIHENSGMINKGKYLALTE  244 (718)
T ss_dssp             TTEEEEECCTTCSSBCGGGC-----SEECCCCCCCCCCCC-CCCCSCGGGCCEEEECHHHHHHSTTSCCSSTTSGGGGGC
T ss_pred             CCeEEEecCCcccccccCCC-----cceEEcccccCCccc-CCCCCChhhcEEEEEehHHhcCCCCCCCCCCCCeecccc
Confidence            46677899999999876532     467777764344556 22223457789999999876532  111   57877765


Q ss_pred             ----------cccceeEEeccccccc
Q psy9007          92 ----------VVIPRIVKQGDFNNWN  107 (132)
Q Consensus        92 ----------nalP~V~~lG~nn~W~  107 (132)
                                ..||+++.||.+++|.
T Consensus       245 ~~~~~l~Gi~~~LdyLk~LGvtaI~L  270 (718)
T 2e8y_A          245 TDTQTANGSSSGLAYVKELGVTHVEL  270 (718)
T ss_dssp             TTCBCTTSCBCHHHHHHHHTCSEEEE
T ss_pred             ccccccccchhhhHHHHHcCCCEEEE
Confidence                      2589999999999997

>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A* 2y5e_A* 2x4b_A

Probab=95.98  E-value=0.00043  Score=61.30  Aligned_cols=83  Identities=14%  Similarity=0.199  Sum_probs=52.2

Q ss_pred             eecCccceEEecCCCCCCc--eeeEEeCCCCCCCcccc-CCCCC--CCchHHHhhcccceEec------CCceEEEeeec
Q psy9007          22 SRLSPWATYVTEPPVVGHA--YEQRIWNPKPQDKHKWT-SSKPK--KPENLKIYESHVGICTQ------EQKCASYEDFV   90 (132)
Q Consensus        22 dRip~w~~~v~q~~~~~~~--f~~~~w~P~~~~~Y~f~-~~~p~--~p~~~~IYEaHvg~~~~------~~~v~tF~~wA   90 (132)
                      ..++||++.++.+...+..  .+...|+|.   .+.|. +.+|.  .++...|||+||+.++.      +...++|+.++
T Consensus       206 ~~~DPya~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~vIYE~HVr~ft~~~~~~~~~~~Gtf~g~~  282 (884)
T 4aio_A          206 LAGDPYARSLSANGARTWLVDINNETLKPA---SWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFA  282 (884)
T ss_dssp             EECCTTCSEESGGGSSEECCCTTCGGGSCT---TGGGGGGTSCCCSCGGGCCEEEECHHHHHTTCTTSCTTTTTSGGGGS
T ss_pred             cccCCCeeeeccCCCCeeEecCccCccCcc---cccccccccCCCCCcccCEEEEEEcCccccCCCCCCccccCcccccc
Confidence            4579999998876431100  112234443   35553 33443  34778999999985532      11126888876


Q ss_pred             ccc------cceeEEeccccccc
Q psy9007          91 RVV------IPRIVKQGDFNNWN  107 (132)
Q Consensus        91 pna------lP~V~~lG~nn~W~  107 (132)
                      ...      ||+++.||.+++|.
T Consensus       283 ~~~~~~ie~L~yLk~LGVtaveL  305 (884)
T 4aio_A          283 YQASAGMEHLRKLSDAGLTHVHL  305 (884)
T ss_dssp             CTTSHHHHHHHHHHHHTCCEEEE
T ss_pred             cchhhHHHHhHHHHHcCCCEEEe
Confidence            543      78999999999997

>2wan_A Pullulanase; hydrolase, glycoside hydrolase, polysaccharide, amylase, starch, carbohydrate; 1.65A {Bacillus acidopullulyticus}

Probab=95.93  E-value=0.00026  Score=65.14  Aligned_cols=86  Identities=19%  Similarity=0.224  Sum_probs=60.8

Q ss_pred             CCcceeecCccceEEecCCCCCCceeeEEeCCCCCCCccccCCC-C--CCCchHHHhhcccceEecC--Cce---EEEee
Q psy9007          17 YLLPISRLSPWATYVTEPPVVGHAYEQRIWNPKPQDKHKWTSSK-P--KKPENLKIYESHVGICTQE--QKC---ASYED   88 (132)
Q Consensus        17 ~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~~~~Y~f~~~~-p--~~p~~~~IYEaHvg~~~~~--~~v---~tF~~   88 (132)
                      .++...+++||++.+..+..     .+++.++...+++.|+..+ |  ..++...|||+|++.++..  .++   ++|+-
T Consensus       385 ~g~~~~~~DPya~~~~~~~~-----~s~v~d~~~~~~~~W~~~~~p~~~~~~~~vIYEihv~~F~~~~~~g~~~~Gt~~g  459 (921)
T 2wan_A          385 NGTTQTAVDPYARAISVNAT-----RGMIVDLKATDPAGWQGDHEQTPANPVDEVIYEAHVRDFSIDANSGMKNKGKYLA  459 (921)
T ss_dssp             SSCEEEECCTTCSSBSGGGS-----SEECCCGGGGSCTTGGGCCCCCCSSGGGCCEEEECHHHHHCSTTSCCSSTTSGGG
T ss_pred             CCeEEEecCCcceeeccCCC-----ceEEEcccccCccccccccCCCCCCchhcEEEEEEcCcccCCCCCCCCCCCCeeh
Confidence            45677899999999877532     4567776533457887543 3  2357789999999866422  111   57877


Q ss_pred             eccc----------ccceeEEeccccccc
Q psy9007          89 FVRV----------VIPRIVKQGDFNNWN  107 (132)
Q Consensus        89 wApn----------alP~V~~lG~nn~W~  107 (132)
                      ++..          .||+++.||.+++|.
T Consensus       460 ~~e~~~~~l~Gi~~~LdyLk~LGvtaI~L  488 (921)
T 2wan_A          460 FTEHGTKGPDHVKTGIDSLKELGITTVQL  488 (921)
T ss_dssp             GGCCSCBCGGGCBCHHHHHHHHTCCEEEE
T ss_pred             eeccccccccccchhhHHHHHcCCCEEEe
Confidence            7664          489999999999997

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=95.66  E-value=0.011  Score=47.39  Aligned_cols=43  Identities=16%  Similarity=0.124  Sum_probs=37.1

Q ss_pred             ceEEEeeecccccceeEEecccccccccccceeeCC-CCeEEEEcC
Q psy9007          82 KCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLD-FGKWELVLP  126 (132)
Q Consensus        82 ~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~-~G~We~~ip  126 (132)
                      +..+|+-.+|.+. .|.+.|.|++|+ ...||.+.+ .|.|++.++
T Consensus       170 ~~v~f~~~~~~~~-~V~v~GsF~~W~-~~~~l~k~~~~g~~~~~~~  213 (294)
T 3nme_A          170 KTVTLTLKDKGFS-RVEISGLDIGWG-QRIPLTLGKGTGFWILKRE  213 (294)
T ss_dssp             EEEEEEEECSSCS-CEEEEETTTEEE-EEEECEECTTTCEEEEEEE
T ss_pred             ccceeeeccCCCC-EEEEEEeccCCC-CcccceEcCCCCEEEEEEE
Confidence            3589999998888 899999999998 568999854 799999885

>2ya0_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; 1.85A {Streptococcus pneumoniae} PDB: 2ya2_A*

Probab=95.62  E-value=0.00035  Score=62.16  Aligned_cols=91  Identities=18%  Similarity=0.205  Sum_probs=59.7

Q ss_pred             cCCcceeecCccceEEecC-CC------CCCceeeEEeCCCCC--CCccccCCCC-CCCchHHHhhcccceEecCC----
Q psy9007          16 RYLLPISRLSPWATYVTEP-PV------VGHAYEQRIWNPKPQ--DKHKWTSSKP-KKPENLKIYESHVGICTQEQ----   81 (132)
Q Consensus        16 ~~~~~~dRip~w~~~v~q~-~~------~~~~f~~~~w~P~~~--~~Y~f~~~~p-~~p~~~~IYEaHvg~~~~~~----   81 (132)
                      ..++....++|||+.+... ..      ......++|++|..-  +.+.|....+ ...+...|||+|++.++.++    
T Consensus        91 ~~~~~~~~~DPya~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~~~~~~~~~~~~~~~~~~viYE~hv~~f~~~~~~~~  170 (714)
T 2ya0_A           91 RQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAK  170 (714)
T ss_dssp             ETTEEEEECCTTCSEECCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTT
T ss_pred             eCCceEEecCCceeeeccCchhccccCccccCCcEEEEcccccCcccccccccCCCCCccccEEEEEEehhhccCCCCcc
Confidence            3456667899999987641 00      012335788887521  2244533222 23467889999998765321    


Q ss_pred             ----ceEEEeeecccccceeEEeccccccc
Q psy9007          82 ----KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ----~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                          +.++|+.++.+ ||+|+.+|.+++|.
T Consensus       171 ~~~~~~Gt~~gi~~~-L~yLk~LGvt~I~L  199 (714)
T 2ya0_A          171 DLTKPFGTFEAFIEK-LDYLKDLGVTHIQL  199 (714)
T ss_dssp             TCSSCTTSHHHHHTT-HHHHHHHTCSEEEE
T ss_pred             ccccCCcCHHHHHHH-hHHHHHcCCCEEEE
Confidence                12689999987 78999999999997

>3faw_A Reticulocyte binding protein; TIM barrel, beta barrel, hydrolase, cell WALL, peptidoglycan-anchor, secreted; 2.10A {Streptococcus agalactiae COH1} PDB: 3fax_A*

Probab=94.63  E-value=0.00099  Score=61.32  Aligned_cols=89  Identities=21%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             ecCCcceeecCccceEEec-CCC-C---CCceeeEEeCCCCCCCccccCC----CC--CCCchHHHhhcccceEecCC--
Q psy9007          15 FRYLLPISRLSPWATYVTE-PPV-V---GHAYEQRIWNPKPQDKHKWTSS----KP--KKPENLKIYESHVGICTQEQ--   81 (132)
Q Consensus        15 ~~~~~~~dRip~w~~~v~q-~~~-~---~~~f~~~~w~P~~~~~Y~f~~~----~p--~~p~~~~IYEaHvg~~~~~~--   81 (132)
                      .+.++....++|||+.+.. ++. .   ...-.+++.+|.   .|.|...    .|  ...+...|||+|++.++...  
T Consensus       208 ~~~~~~~~~~DPYA~~~~~~~~~~~~~~~~~~~s~vvd~~---~~~~~~~~~~~~p~~~~~~~~vIYElhvr~ft~~~~~  284 (877)
T 3faw_A          208 KRGKDKVKILDPYAKSLAEWDSNTVNDDIKTAKAAFVNPS---QLGPQNLSFAKIANFKGRQDAVIYEAHVRDFTSDQSL  284 (877)
T ss_dssp             EETTEEEEECCTTCSCBCCCBGGGCCSSCCSCCEECCCGG---GSSCTTCCCCCCTTCCSGGGCEEEEECTTGGGCCGGG
T ss_pred             eeCCceeEecCccceeccccCcccccccccCCceEEeccc---ccCCCccccccCCCCCCccccEEEEEEchHhcCCCCC
Confidence            3557778899999998864 111 0   011257888875   2555421    22  22356779999998664321  


Q ss_pred             ------ceEEEeeecccccceeEEeccccccc
Q psy9007          82 ------KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ------~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                            +.++|+.++.. ||+|+.+|++++|.
T Consensus       285 ~~~~~~~~Gt~~gl~~~-L~yLk~LGvtaV~L  315 (877)
T 3faw_A          285 DGKLKNQLGTFAAFSEK-LDYLQKLGVTHIQL  315 (877)
T ss_dssp             TTTCSSCTTSHHHHGGG-HHHHHHHTCSEEEE
T ss_pred             CccccCCCCCHHHHHHH-HHHHHHcCCCEEEE
Confidence                  12789999987 78999999999997

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=94.51  E-value=0.022  Score=45.42  Aligned_cols=38  Identities=13%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             eeecccccceeEEecccccccccccceee--CCCCeEEEEcC
Q psy9007          87 EDFVRVVIPRIVKQGDFNNWNREEFAYKK--LDFGKWELVLP  126 (132)
Q Consensus        87 ~~wApnalP~V~~lG~nn~W~~~~~~m~~--~~~G~We~~ip  126 (132)
                      -.|...+. .|.+.|.|++|+.. ++|.+  ...|.|++.++
T Consensus         8 f~W~~~a~-~V~V~GsF~~W~~~-~~m~k~~~~~G~f~~tv~   47 (252)
T 2qlv_B            8 IRWQQGGS-KVYVTGSFTKWRKM-IGLIPDSDNNGSFHVKLR   47 (252)
T ss_dssp             EEECSCCS-CEEEEEGGGTTSSC-EECEECSSSTTCEEEEEE
T ss_pred             EEEeCCCc-EEEEEEEeCCCcCc-ccceeccCCCCcEEEEEE
Confidence            35778887 99999999999854 78987  45699999874

>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel, alpha-amylase-family, complex with maltotetraose, hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP: b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A* 2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*

Probab=94.48  E-value=0.0011  Score=62.40  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=57.4

Q ss_pred             ceeecCccceEEecCCCCCCceeeEEeCCCC--CCCccccCCCCC----CCchH---HHhhcccceEecCC--c----eE
Q psy9007          20 PISRLSPWATYVTEPPVVGHAYEQRIWNPKP--QDKHKWTSSKPK----KPENL---KIYESHVGICTQEQ--K----CA   84 (132)
Q Consensus        20 ~~dRip~w~~~v~q~~~~~~~f~~~~w~P~~--~~~Y~f~~~~p~----~p~~~---~IYEaHvg~~~~~~--~----v~   84 (132)
                      ....++||++.+..+..     -++++++..  -+++.|...+++    .++..   .|||+|++.++...  +    .+
T Consensus       373 ~~~~~DPYa~~~~~~~~-----~s~v~d~~~~~~~p~~W~~~~~p~~~~~~~~~~~~vIYE~hvr~ft~~~~~~~~~~~G  447 (1083)
T 2fhf_A          373 QYEVTDPYAHSLSTNSE-----YSQVVDLNDSALKPEGWDGLTMPHAQKTKADLAKMTIHESHIRDLSAWDQTVPAELRG  447 (1083)
T ss_dssp             EEEECCTTCSCBCGGGS-----SEECBCTTCGGGSCTTGGGCCCSSCCSSHHHHHTCEEEEECHHHHHTTCTTSCGGGTT
T ss_pred             cceecCCccceeccCCC-----cceEecccccccCCcccccccCcccccccccccccEEEEEecchhcCCCCCCCcCCCC
Confidence            36789999999987532     346777652  136788877664    22345   89999998765321  1    26


Q ss_pred             EEeeeccc------ccceeEEeccccccc
Q psy9007          85 SYEDFVRV------VIPRIVKQGDFNNWN  107 (132)
Q Consensus        85 tF~~wApn------alP~V~~lG~nn~W~  107 (132)
                      +|+-++..      .|++++.+|.+++|.
T Consensus       448 t~~g~~e~~~~~i~~L~~L~~lGvt~i~L  476 (1083)
T 2fhf_A          448 KYLALTAQESNMVQHLKQLSASGVTHIEL  476 (1083)
T ss_dssp             SGGGGGCTTSHHHHHHHHHHHHTCCEEEE
T ss_pred             ChhhhhhhhhhhHHHHHHHHhcCCCEEEE
Confidence            78888874      355777789999997

>2ya1_A Putative alkaline amylopullulanase; hydrolase, glycoside hydrolase; HET: BGC GLC; 2.25A {Streptococcus pneumoniae}

Probab=94.43  E-value=0.00091  Score=62.22  Aligned_cols=91  Identities=18%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             cCCcceeecCccceEEecC-CC------CCCceeeEEeCCCC--CCCccccCCCC-CCCchHHHhhcccceEecCC----
Q psy9007          16 RYLLPISRLSPWATYVTEP-PV------VGHAYEQRIWNPKP--QDKHKWTSSKP-KKPENLKIYESHVGICTQEQ----   81 (132)
Q Consensus        16 ~~~~~~dRip~w~~~v~q~-~~------~~~~f~~~~w~P~~--~~~Y~f~~~~p-~~p~~~~IYEaHvg~~~~~~----   81 (132)
                      ..++....++||++.+... .+      ......+++++|..  .+.+.|....+ ...+...|||+|++.++.++    
T Consensus       398 ~~~~~~~~~DPYa~~~~~~~~~~~~~~~~~~~~~s~vvd~~~~~~~~~~~~~~~~~~~~~~~vIYE~hv~~ft~~~~~~~  477 (1014)
T 2ya1_A          398 RQGKTVLALDPYAKSLAAWNSDDSKIDDAHKVAKAAFVDPAKLGPQDLTYGKIHNFKTREDAVIYEAHVRDFTSDPAIAK  477 (1014)
T ss_dssp             ETTEEEEECCTTCSSBCCCBGGGTTSCGGGSSCCEECCCGGGSSCTTCCCCCCTTCSSGGGCCEEEECHHHHHCCGGGTT
T ss_pred             eCCeEEEecCccceeccccccccccccccCCcccEEEECchhcCCcccccccCccccCccccEEEEEecCCCCCCCCccc
Confidence            3456667899999876531 10      01234678888752  12244533222 23467889999998765321    


Q ss_pred             ----ceEEEeeecccccceeEEeccccccc
Q psy9007          82 ----KCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        82 ----~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                          +.++|+.++.+ ||+|+.||.+++|.
T Consensus       478 ~~~~~~Gt~~gl~~~-LdyLk~LGvtaV~L  506 (1014)
T 2ya1_A          478 DLTKPFGTFEAFIEK-LDYLKDLGVTHIQL  506 (1014)
T ss_dssp             TCSSCTTSHHHHHTT-HHHHHHHTCSEEEE
T ss_pred             cccCCCcCHHHHHHH-hHHHHHcCCCeEEe
Confidence                12689999988 78999999999997

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=93.84  E-value=0.053  Score=47.91  Aligned_cols=41  Identities=12%  Similarity=0.080  Sum_probs=34.3

Q ss_pred             EEEeeeccc-ccceeEEecccccccccccceeeCCCCeEEEEcC
Q psy9007          84 ASYEDFVRV-VIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLP  126 (132)
Q Consensus        84 ~tF~~wApn-alP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip  126 (132)
                      ++|+.=+|. +. .|.++|.||+|++..++|++. .|.|++.+.
T Consensus        20 v~f~~~~~~~~~-~v~~~G~Fn~w~~~~~~~~~~-~~~~~~~~~   61 (696)
T 4aee_A           20 VKFTRHWPQYAK-NIYLIGEFTSLYPGFVKLRKI-EEQGIVYLK   61 (696)
T ss_dssp             EEEEEECCTTCS-CEEEEETTSCSSTTSCBCEEE-TTEEEEEEE
T ss_pred             EEEEEECCCCCc-EEEEEEecCCCCCCCcceEec-CCeEEEEEE
Confidence            778765554 66 899999999999889999887 799998874

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=90.98  E-value=0.2  Score=43.64  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=28.6

Q ss_pred             ecccccceeEEecccccccccccceeeCCCCeEEEEcC
Q psy9007          89 FVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLP  126 (132)
Q Consensus        89 wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip  126 (132)
                      +..... .+.++|.||+|++..++|++. .|.|++.|+
T Consensus        23 ~~~~~~-~~yl~G~Fn~w~~~~~~m~~~-g~~~~~~v~   58 (645)
T 4aef_A           23 LIREGS-YAYLLGDFNAFNEGSFRMEQE-GKNWKIKIA   58 (645)
T ss_dssp             EECCSS-CEEEEETTTTTCTTSSEEEEC-SSEEEEEEE
T ss_pred             cCCCCe-EEEEEEcCCCCCCCcccceEc-CCEEEEEEE
Confidence            444445 799999999999888999875 488888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	99.37
d1eh9a1	90	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.7
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	98.24
d2fhfa1	115	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	98.05
d1bf2a1	162	Isoamylase, N-terminal domain N {Pseudomonas amylo	97.52
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	96.97
d1m7xa3	396	1,4-alpha-glucan branching enzyme, central domain	96.08
d1m7xa1	110	1,4-alpha-glucan branching enzyme, N-terminal doma	95.53
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	93.63
d2bhua3	420	Glycosyltrehalose trehalohydrolase, central domain	92.16
d1eh9a3	400	Glycosyltrehalose trehalohydrolase, central domain	91.02
d2fhfa5	563	Pullulanase PulA {Klebsiella pneumoniae [TaxId: 57	80.51
d1bf2a3	475	Isoamylase, central domain {Pseudomonas amyloderam	80.39

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.9e-13  Score=95.23  Aligned_cols=64  Identities=19%  Similarity=0.426  Sum_probs=51.5

Q ss_pred             HHHhhcccceEecCCceEEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCCCCCCC
Q psy9007          67 LKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPPNPDGS  132 (132)
Q Consensus        67 ~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~~~~G~  132 (132)
                      ++...||+-. .....+++|++|||+|. +|.++|+||+|+.++++|.+ .+.|+|+++||++..|.
T Consensus         6 y~~lGah~~~-~~g~~Gv~FrvwAP~A~-~V~l~gdfn~~~~~~~~m~~~~~~G~W~~~i~~~~~G~   70 (110)
T d1m7xa1           6 YETLGAHADT-MDGVTGTRFSVWAPNAR-RVSVVGQFNYWDGRRHPMRLRKESGIWELFIPGAHNGQ   70 (110)
T ss_dssp             GGTSEEEEEE-SSSCEEEEEEEECSSCS-CEEEEEGGGTSCTTTCBCCCCTTTTEEEEEEETCCTTC
T ss_pred             HHHcCCEEee-cCCcceEEEEEECCCCC-EEEEEEECCCCCCceEEeEEecCCCcEEEEecCCCCCC
Confidence            3455588732 11123589999999999 99999999999999999986 56799999999998874

>d1eh9a1 b.1.18.2 (A:1-90) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=98.70  E-value=2.9e-09  Score=71.63  Aligned_cols=45  Identities=4%  Similarity=-0.057  Sum_probs=39.0

Q ss_pred             eEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.+++++.    ..++|.+.+.|+|++++|++..|.
T Consensus        10 gv~FrvwAP~A~-~V~l~~~~~----~~~~m~~~~~G~W~~~v~~~~~G~   54 (90)
T d1eh9a1          10 EVIFTLWAPYQK-SVKLKVLEK----GLYEMERDEKGYFTITLNNVKVRD   54 (90)
T ss_dssp             CEECCEECTTCS-CCBCCCSSS----CCCCCCCCTTSEECCEESSCCSCC
T ss_pred             CEEEEEECCCCC-EEEEEeecC----CcccceeCCCCEEEEEeCCCCCCc
Confidence            389999999999 999998853    356898888899999999998874

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.24  E-value=4.3e-07  Score=61.61  Aligned_cols=53  Identities=15%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             HhhcccceEecCCceEEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcCCCCCC
Q psy9007          69 IYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLPPNPDG  131 (132)
Q Consensus        69 IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip~~~~G  131 (132)
                      ...||.-   ..+.+++|++|||+|. +|.++++++     .++|.+.+.|+|++++| ...|
T Consensus        11 ~lGa~~~---~~~~g~~FrvwAP~A~-~V~l~~~~~-----~~~m~~~~~G~w~~~~~-~~~G   63 (97)
T d2bhua1          11 RLGATPL---PGGAGTRFRLWTSTAR-TVAVRVNGT-----EHVMTSLGGGIYELELP-VGPG   63 (97)
T ss_dssp             CSEEEEC---GGGCCEEEEEECSSCS-SEEEEETTE-----EEECEEEETTEEEEEES-CCTT
T ss_pred             ccCCeEe---CCCCeEEEEEECCCCC-EeEEEeeCC-----ccCCEEccCEEEEEEcC-CCCC
Confidence            3456641   2223489999999999 999999754     46899987899999997 4565

>d2fhfa1 b.1.18.2 (A:288-402) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.05  E-value=2.8e-06  Score=58.28  Aligned_cols=49  Identities=6%  Similarity=0.040  Sum_probs=37.6

Q ss_pred             eEEEeeecccccceeEEeccccccc-cccccee-eCCCCeEEEEcCCCCCCC
Q psy9007          83 CASYEDFVRVVIPRIVKQGDFNNWN-REEFAYK-KLDFGKWELVLPPNPDGS  132 (132)
Q Consensus        83 v~tF~~wApnalP~V~~lG~nn~W~-~~~~~m~-~~~~G~We~~ip~~~~G~  132 (132)
                      +++|++|||+|. +|.++-|...+. ....+|. +...|+|+++|++..+|.
T Consensus        18 g~~F~lwAP~A~-~V~L~l~~~~~~~~~~~~~~~~~~~GvW~~~i~~~~~G~   68 (115)
T d2fhfa1          18 GVTFRVWAPTAQ-QVELVIYSADKKVIASHPMTRDSASGAWSWQGGSDLKGA   68 (115)
T ss_dssp             EEEEEEECTTCS-EEEEEEECTTCCEEEEEECEECTTTCEEEEEECGGGTTC
T ss_pred             cEEEEEECCCCC-EEEEEEECCCCCccceeeeeEcCCCCEEEEEECCCCCCC
Confidence            489999999999 999987765544 3334454 455699999999988774

>d1bf2a1 b.1.18.2 (A:1-162) Isoamylase, N-terminal domain N {Pseudomonas amyloderamosa [TaxId: 32043]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Isoamylase, N-terminal domain N
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=97.52  E-value=7.1e-05  Score=53.71  Aligned_cols=42  Identities=14%  Similarity=0.300  Sum_probs=36.0

Q ss_pred             EEEeeecccccceeEEecccccccc---cccceeeCCCCeEEEEcC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNR---EEFAYKKLDFGKWELVLP  126 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~---~~~~m~~~~~G~We~~ip  126 (132)
                      .+|++|||+|. +|.++-|.+.++.   ..++|.+...|+|.+++|
T Consensus        18 v~F~vwAp~A~-~V~L~ly~~~~~~~~~~~~~l~~~~~gvW~~~v~   62 (162)
T d1bf2a1          18 ITFRVYSSQAT-RIVLYLYSAGYGVQESATYTLSPAGSGVWAVTVP   62 (162)
T ss_dssp             EEEEEECSSCS-EEEEEEESSSSSCCCSEEEECEECSTTEEEEEEE
T ss_pred             EEEEEECCCCC-EEEEEEEcCCCCCcceeEEEcccccccEEEEEec
Confidence            58999999999 9999999877753   347887777899999997

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=96.97  E-value=0.00041  Score=44.88  Aligned_cols=42  Identities=12%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             EEEeeecccccceeEEecccccccccccceee-CCCCeEEEEcCC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKK-LDFGKWELVLPP  127 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~-~~~G~We~~ip~  127 (132)
                      .+|+ |..++. .|.++|.||+|++...+|+. .++|.|++.++-
T Consensus         6 v~f~-w~~~g~-~V~v~GsFn~W~~~~~~~~~~~~~g~~~~~l~l   48 (87)
T d2qlvb1           6 VEIR-WQQGGS-KVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRL   48 (87)
T ss_dssp             EEEE-ECSCCS-CEEEEEGGGTTSSCEECEECSSSTTCEEEEEEE
T ss_pred             EEEE-ECCCCe-EEEEEEEecCcCcccccccccCCCccEEEEEeC
Confidence            5665 888888 89999999999976555554 456999998853

>d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: 1,4-alpha-glucan branching enzyme, central domain
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=2.3e-05  Score=58.85  Aligned_cols=53  Identities=19%  Similarity=0.265  Sum_probs=42.5

Q ss_pred             CccccCCCCCCCchHHHhhcccceEe---cCCceEEEeeecccccceeEEeccccccc
Q psy9007          53 KHKWTSSKPKKPENLKIYESHVGICT---QEQKCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        53 ~Y~f~~~~p~~p~~~~IYEaHvg~~~---~~~~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      .++++.+++.+|  +.|||+|++.++   ..+++++|+..+.+.+|+|+.||.+++|.
T Consensus         5 ~~~~~~~~~~~~--~~iYe~~~~~f~~~~~~~~~g~~~gi~~klidyl~~LGv~~iwl   60 (396)
T d1m7xa3           5 EERKKANQFDAP--ISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYAKWMGFTHLEL   60 (396)
T ss_dssp             HHHHHHHSTTSC--CEEEEECTTSSCBCTTTCCBCCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             cccccCCCCCCC--cEEEEEccCccCCCCCCCCCCCHHHHHHHHHHHHHHcCCCEEEe
Confidence            466777777655  689999999853   33445899999999669999999999997

>d1m7xa1 b.1.18.2 (A:117-226) 1,4-alpha-glucan branching enzyme, N-terminal domain N {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: 1,4-alpha-glucan branching enzyme, N-terminal domain N
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0062  Score=40.70  Aligned_cols=37  Identities=14%  Similarity=-0.050  Sum_probs=29.9

Q ss_pred             eeeEEEecCCcceeecCccceEEecCCCCCCceeeEEeCCC
Q psy9007           9 ITRTLIFRYLLPISRLSPWATYVTEPPVVGHAYEQRIWNPK   49 (132)
Q Consensus         9 ~~~~~~~~~~~~~dRip~w~~~v~q~~~~~~~f~~~~w~P~   49 (132)
                      -+=+|...+|++++|++|||+.+++++. +   ..+||+.|
T Consensus        72 Y~y~v~~~~G~~~~~~DPYA~~~e~~p~-~---aSvv~dlp  108 (110)
T d1m7xa1          72 YKYEMIDANGNLRLKSDPYAFEAQMRPE-T---ASLICGLP  108 (110)
T ss_dssp             EEEEEECTTSCEEEECCTTCSSEECTTT-C---EEECCCCC
T ss_pred             EEEEEEcCCCcEeEEcChhhcccccCCC-C---eEEEecCC
Confidence            3445555688999999999999999876 4   68999966

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=93.63  E-value=0.025  Score=36.25  Aligned_cols=38  Identities=16%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             EEEeeecccccceeEEecccccccccccceeeCCCCeEEEEcC
Q psy9007          84 ASYEDFVRVVIPRIVKQGDFNNWNREEFAYKKLDFGKWELVLP  126 (132)
Q Consensus        84 ~tF~~wApnalP~V~~lG~nn~W~~~~~~m~~~~~G~We~~ip  126 (132)
                      .+|+ |...+. .|.+.|.|++|++  .+|.+. +|.|++.++
T Consensus         4 ~~f~-w~~~a~-~V~v~Gsfn~W~~--~~~~~~-~g~~~~tl~   41 (87)
T d1z0na1           4 TVFR-WTGGGK-EVYLSGSFNNWSK--LPMTRS-QNNFVAILD   41 (87)
T ss_dssp             EEEE-ECSCCS-CEEEEEGGGTTCC--EECEEE-TTEEEEEEE
T ss_pred             EEEE-EcCCCE-EEEEEEEeCCCCc--cccccC-CCcEEEEEE
Confidence            4554 777888 8999999999984  456553 599999875

>d2bhua3 c.1.8.1 (A:111-530) Glycosyltrehalose trehalohydrolase, central domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.16  E-value=0.002  Score=49.97  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=41.8

Q ss_pred             ccccCCCCCCC--chHHHhhcccceEecCCceEEEeeecccccceeEEeccccccc
Q psy9007          54 HKWTSSKPKKP--ENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        54 Y~f~~~~p~~p--~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      |+|....++.+  +...|||+|+..+++.   ++|+..+.. |+.|+.||.+++|.
T Consensus         2 ~~w~~~~~~~~~~~~~viYe~~~~~f~~~---Gd~~g~~~~-ldyl~~LGv~~i~L   53 (420)
T d2bhua3           2 FDWTDADWHGIKLADCVFYEVHVGTFTPE---GTYRAAAEK-LPYLKELGVTAIQV   53 (420)
T ss_dssp             SCCCCTTCCCCCGGGCCEEEECHHHHSSS---CSHHHHHHT-HHHHHHHTCCEEEE
T ss_pred             cCCCCCCCCCCCccccEEEEEehhhcCCC---CCHHHHHHh-HHHHHHcCCCEEEe
Confidence            88988888554  5778999999877653   569999987 78999999999997

>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Glycosyltrehalose trehalohydrolase, central domain
species: Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]

Probab=91.02  E-value=0.0035  Score=47.74  Aligned_cols=47  Identities=30%  Similarity=0.341  Sum_probs=38.1

Q ss_pred             cCCCCCCCchHHHhhcccceEecCCceEEEeeecccccceeEEeccccccc
Q psy9007          57 TSSKPKKPENLKIYESHVGICTQEQKCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        57 ~~~~p~~p~~~~IYEaHvg~~~~~~~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      .+..+.+.+.+.|||+|+..++++   ++|+-...+ ||+|+.||.+++|.
T Consensus         2 ~~~~~~~~~~~viYe~~v~~f~~~---Gd~~gi~~~-ldyi~~LGv~~i~l   48 (400)
T d1eh9a3           2 NNETFLKKEDLIIYEIHVGTFTPE---GTFEGVIRK-LDYLKDLGITAIEI   48 (400)
T ss_dssp             CSCCSCCSSSCCEEEECTTTSSSS---CSHHHHHHT-HHHHHHHTCCEEEE
T ss_pred             CCCCcCCCcCeEEEEEehhhhCCC---CCHHHHHHH-hHHHHHcCCCEEEe
Confidence            445555567789999999987764   468888887 88999999999997

>d2fhfa5 c.1.8.1 (A:403-965) Pullulanase PulA {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Pullulanase PulA
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.51  E-value=0.021  Score=44.74  Aligned_cols=43  Identities=14%  Similarity=0.061  Sum_probs=33.4

Q ss_pred             chHHHhhcccceEecC--Cce----EEEeeecccc------cceeEEeccccccc
Q psy9007          65 ENLKIYESHVGICTQE--QKC----ASYEDFVRVV------IPRIVKQGDFNNWN  107 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~--~~v----~tF~~wApna------lP~V~~lG~nn~W~  107 (132)
                      +...|||+||..++..  .+.    ++|+-++..+      |++++.||.+++|.
T Consensus        20 ~~~viYei~vr~F~d~~~d~~~~~~G~f~~~~~~~~~~i~~LdyL~~LGVtaiwL   74 (563)
T d2fhfa5          20 AKMTIHESHIRDLSAWDQTVPAELRGKYLALTAQESNMVQHLKQLSASGVTHIEL   74 (563)
T ss_dssp             HTCEEEEECHHHHHTTCTTSCGGGTTSGGGGGCTTSHHHHHHHHHHHHTCCEEEE
T ss_pred             HHcEEEEecchhhhccCCCCccccCcChhhccccCcchhhhHHHHHHcCCCEEEe
Confidence            5677999999866422  111    6898888875      88999999999997

>d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: Isoamylase, central domain
species: Pseudomonas amyloderamosa [TaxId: 32043]

Probab=80.39  E-value=0.011  Score=46.05  Aligned_cols=42  Identities=21%  Similarity=0.066  Sum_probs=33.5

Q ss_pred             chHHHhhcccceEecC------CceEEEeeecccccceeEEeccccccc
Q psy9007          65 ENLKIYESHVGICTQE------QKCASYEDFVRVVIPRIVKQGDFNNWN  107 (132)
Q Consensus        65 ~~~~IYEaHvg~~~~~------~~v~tF~~wApnalP~V~~lG~nn~W~  107 (132)
                      +.+.|||.||+.++..      .+.++|+-.+.+ ||+|+.||.|++|.
T Consensus        15 ~d~viYei~v~~f~~~~~~~~~~~~Gd~~Gi~~k-Ldyl~~LGvnaiwl   62 (475)
T d1bf2a3          15 KDDVIYEVHVRGFTEQDTSIPAQYRGTYYGAGLK-ASYLASLGVTAVEF   62 (475)
T ss_dssp             GGCCEEEECHHHHHTTCTTSCGGGTTSHHHHHHT-HHHHHHHTCCEEEE
T ss_pred             cceEEEEEEhhHhccCCCCCCccccCCHHHHHhh-hHHHHHcCCCEEEe
Confidence            6778999999865332      223678888888 88999999999997