Psyllid ID: psy9010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MSHNVKERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIEKPCSTREVVKAPLPFGK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEcccccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccHHEEHHHccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccEcccccccccccEEEEEccccEEEEEEEcccHHcccccccccccEEEcccccccccccEEEEEccccHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEccccccEEEcccccccc
Coil and Loop (DISEMBL)
MSHNVKERQYLhqhsilfprvgveqagkykvvldsdcshfggfnrldpgtvyetypepwnnrrnsiklylptrtgnenKLQSMKRYIQTEsnmngfgiqtlptqsplylvakiekpcstrevvkaplpfgk
Flexible Loop (DISEMBL)
mshnvkerqylhqhsilfpRVGVEQAGKYKVVLDSDCShfggfnrldpgtvyetypepwnnrrnsiklylptrtgnenkLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIekpcstrevvkaplpfgk
Low Complexity Region (SEG)
MSHNVKERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIEKPCSTREVVKAPLPFGK
Disordered region (IsUnstruct)
*********YLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPT*************YIQ***NMNGFGIQTLPTQSPLYLVAKIEKPC**************
Disordered Region (DISOPRED)
****VKE*QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQS*******************PTQSPLYLVAKI*************LPF**
Disordered Region (DISEMBL)
MSHNVKERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIEKPCSTREVVKAPLPFGK
Disordered Region (DISPRO)
******ERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIEKPCSTREVVKAPLPFGK
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHNVKERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKRYIQTESNMNGFGIQTLPTQSPLYLVAKIEKPCSTREVVKAPLPFGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q9Y8H3	684	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.081	0.571	8e-13
P0CN82	682	1,4-alpha-glucan-branchin	yes	N/A	0.419	0.080	0.545	3e-11
P0CN83	682	1,4-alpha-glucan-branchin	N/A	N/A	0.419	0.080	0.545	3e-11
Q6FJV0	706	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.079	0.5	7e-11
P32775	704	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.079	0.464	8e-10
Q757Q6	703	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.079	0.456	2e-09
Q96VA4	689	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.081	0.5	4e-09
Q6CCT1	691	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.081	0.473	2e-08
Q8NKE1	683	1,4-alpha-glucan-branchin	N/A	N/A	0.427	0.081	0.392	3e-08
Q9LZS3	805	1,4-alpha-glucan-branchin	yes	N/A	0.427	0.069	0.5	6e-08

>sp|Q9Y8H3|GLGB_EMENI 1,4-alpha-glucan-branching enzyme OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=be1 PE=2 SV=3

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 40/56 (71%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           RVGVEQAG Y+VVLD+D   FGG  R+D GT + T    WN RRN +++Y+PTRT 
Sbjct: 620 RVGVEQAGTYRVVLDTDDQAFGGLGRIDQGTRFFTTDMEWNGRRNYLQVYIPTRTA 675

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 8

>sp|P0CN82|GLGB_CRYNJ 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=GLC3 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
           RVGV+ AG+YKV+L SD + FGG NR+D G  Y T P  WN R+N +++Y P+RT
Sbjct: 622 RVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRT 676

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P0CN83|GLGB_CRYNB 1,4-alpha-glucan-branching enzyme OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=GLC3 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 40/55 (72%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
           RVGV+ AG+YKV+L SD + FGG NR+D G  Y T P  WN R+N +++Y P+RT
Sbjct: 622 RVGVDTAGEYKVILTSDETRFGGHNRIDMGGRYFTTPMEWNGRKNWLQVYSPSRT 676

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6FJV0|GLGB_CANGA 1,4-alpha-glucan-branching enzyme OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GLC3 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/56 (50%), Positives = 40/56 (71%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GV+ AG YK+VL++D + FGG NR+D    + T    WNNRRN I++Y+P+RT 
Sbjct: 644 RIGVDVAGTYKIVLNTDRAEFGGHNRIDEAQEFFTTDLEWNNRRNFIQVYIPSRTA 699

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P32775|GLGB_YEAST 1,4-alpha-glucan-branching enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GLC3 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 40/56 (71%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           RVGVE+AG Y +VL+SD + FGG NR++  + + T    WNNR+N +++Y+P+R  
Sbjct: 642 RVGVEKAGTYHIVLNSDRAEFGGHNRINESSEFFTTDLEWNNRKNFLQVYIPSRVA 697

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q757Q6|GLGB_ASHGO 1,4-alpha-glucan-branching enzyme OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GLC3 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRL-DPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GV++AG Y+++L+SD   FGG  R+ +  +V+ T    WN RRN I++YLP+RT 
Sbjct: 640 RIGVDEAGAYRIILNSDREEFGGHRRIEEENSVFHTTDLEWNGRRNFIQVYLPSRTA 696

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q96VA4|GLGB_ASPOR 1,4-alpha-glucan-branching enzyme OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=gbeA PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 37/56 (66%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           RVGVEQ+G Y++VLD+D   FGG NR    T + T    WN R N +++Y+PTRT 
Sbjct: 625 RVGVEQSGTYRIVLDTDDPAFGGLNRNLKETRFFTTDLSWNGRSNFLQVYIPTRTA 680

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q6CCT1|GLGB_YARLI 1,4-alpha-glucan-branching enzyme OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GLC3 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLD-PGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GV+Q G Y +VLDSD   FGGF R+D   T   T P  WN R N + +Y+P+R  
Sbjct: 623 RIGVDQPGTYTLVLDSDSPEFGGFGRIDHEKTRCHTEPLEWNGRANCMHIYIPSRVA 679

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q8NKE1|GLGB_GLOIN 1,4-alpha-glucan-branching enzyme OS=Glomus intraradices GN=GLC3 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           ++G E AGKY + L++D   FGG +R+D    Y + P  W+ R+N I++Y+P R  
Sbjct: 622 KIGTEWAGKYSIALNTDRKIFGGHDRIDESISYHSQPHEWDGRKNYIQVYIPCRVA 677

Glomus intraradices (taxid: 4876)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9LZS3|GLGB2_ARATH 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SBE2.2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 34/56 (60%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+G  + GKYK+VLDSD   FGGFNRLD    Y TY   ++ R  S  +Y P RT 
Sbjct: 741 RIGCSKPGKYKIVLDSDDPLFGGFNRLDRKAEYFTYDGLYDERPCSFMVYAPCRTA 796

Catalyzes the formation of the alpha-1,6-glucosidic linkages in starch by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
336263904	706	hypothetical protein SMAC_04163 [Sordari	0.541	0.100	0.535	2e-13
336468637	705	hypothetical protein NEUTE1DRAFT_84310 [	0.480	0.089	0.555	9e-13
255725744	672	1,4-alpha-glucan branching enzyme [Candi	0.427	0.083	0.607	1e-12
164424837	741	1,4-alpha-glucan branching enzyme [Neuro	0.427	0.075	0.589	1e-12
158289893	682	AGAP010428-PA [Anopheles gambiae str. PE	0.427	0.082	0.607	2e-12
361128643	672	putative 1,4-alpha-glucan-branching enzy	0.534	0.104	0.486	5e-12
156050415	697	hypothetical protein SS1G_07794 [Sclerot	0.480	0.090	0.539	2e-11
68473480	676	likely glycogen branching enzyme [Candid	0.427	0.082	0.589	4e-11
68473715	565	likely glycogen branching enzyme [Candid	0.427	0.099	0.589	4e-11
241956736	677	1,4-alpha-glucan-branching enzyme, putat	0.427	0.082	0.553	4e-11

>gi|336263904|ref|XP_003346731.1| hypothetical protein SMAC_04163 [Sordaria macrospora k-hell] gi|380091438|emb|CCC10934.1| unnamed protein product [Sordaria macrospora k-hell]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 48/71 (67%)

Query: 12  HQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           H +S    R+G+EQAG Y++VLDSD    GGFNRLDP T + T   PWNNR+NS  +Y+P
Sbjct: 632 HTNSYTDYRIGIEQAGTYRIVLDSDTQDHGGFNRLDPQTRFFTSDLPWNNRKNSTHVYIP 691

Query: 72  TRTGNENKLQS 82
           TRT     L+S
Sbjct: 692 TRTAIVLALES 702

Source: Sordaria macrospora k-hell

Species: Sordaria macrospora

Genus: Sordaria

Family: Sordariaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|336468637|gb|EGO56800.1| hypothetical protein NEUTE1DRAFT_84310 [Neurospora tetrasperma FGSC 2508] gi|350289086|gb|EGZ70311.1| putative branching enzyme [Neurospora tetrasperma FGSC 2509]

 Score = 78.2 bits (191), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 44/63 (69%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENK 79
           R+G+EQAG Y++VLDSD    GGFNRLDP T + T   PWNNR+NS  +Y+P RT     
Sbjct: 639 RIGIEQAGTYRIVLDSDTKEHGGFNRLDPQTRFFTSDLPWNNRKNSTHVYIPARTAFVLA 698

Query: 80  LQS 82
           L+S
Sbjct: 699 LES 701

Source: Neurospora tetrasperma FGSC 2508

Species: Neurospora tetrasperma

Genus: Neurospora

Family: Sordariaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|255725744|ref|XP_002547801.1| 1,4-alpha-glucan branching enzyme [Candida tropicalis MYA-3404] gi|240135692|gb|EER35246.1| 1,4-alpha-glucan branching enzyme [Candida tropicalis MYA-3404]

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 42/56 (75%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           ++GVE  GKYKVVLDSD   FGG  RLD   VY T  EPWN+R+NS+++Y+PTRT 
Sbjct: 609 KIGVEHPGKYKVVLDSDAEEFGGHQRLDDSQVYFTSDEPWNHRKNSMQVYIPTRTA 664

Source: Candida tropicalis MYA-3404

Species: Candida tropicalis

Genus: Candida

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|164424837|ref|XP_963252.2| 1,4-alpha-glucan branching enzyme [Neurospora crassa OR74A] gi|16416077|emb|CAB91480.2| probable branching enzyme (be1) [Neurospora crassa] gi|157070683|gb|EAA34016.2| 1,4-alpha-glucan branching enzyme [Neurospora crassa OR74A]

 Score = 77.8 bits (190), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+G+EQAG Y++VLDSD    GGFNRLDP T + T   PWNNR+NS  +Y+P RT 
Sbjct: 639 RIGIEQAGTYRIVLDSDTKEHGGFNRLDPQTRFFTSDLPWNNRKNSTHVYIPARTA 694

Source: Neurospora crassa OR74A

Species: Neurospora crassa

Genus: Neurospora

Family: Sordariaceae

Order: Sordariales

Class: Sordariomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|158289893|ref|XP_311519.3| AGAP010428-PA [Anopheles gambiae str. PEST] gi|157018377|gb|EAA07235.3| AGAP010428-PA [Anopheles gambiae str. PEST]

 Score = 77.4 bits (189), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GVE AGKY+VVL SD + FGGFNR+D    + T+PE W  RRN I+LYLP RT 
Sbjct: 621 RIGVELAGKYRVVLSSDDAEFGGFNRIDKNVEHHTFPEGWAGRRNHIQLYLPCRTA 676

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|361128643|gb|EHL00573.1| putative 1,4-alpha-glucan-branching enzyme [Glarea lozoyensis 74030]

 Score = 75.9 bits (185), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 2/72 (2%)

Query: 13  QHSILFP--RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYL 70
            HS  FP  R+G+EQAG Y+V+L++D   +GGF R+D GT + T   PWN R+N  ++YL
Sbjct: 599 HHSQSFPDYRIGIEQAGTYRVILNTDLKDYGGFERIDSGTRFFTTDLPWNGRKNFTQVYL 658

Query: 71  PTRTGNENKLQS 82
           PTRT     L+S
Sbjct: 659 PTRTAVVLALES 670

Source: Glarea lozoyensis 74030

Species: Glarea lozoyensis

Genus: Glarea

Family: Helotiaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|156050415|ref|XP_001591169.1| hypothetical protein SS1G_07794 [Sclerotinia sclerotiorum 1980] gi|154692195|gb|EDN91933.1| hypothetical protein SS1G_07794 [Sclerotinia sclerotiorum 1980 UF-70]

 Score = 73.9 bits (180), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENK 79
           RVGVEQ G Y+VVL++D    GGF R+D GT + T P  WNNR+N I++Y+PTRT     
Sbjct: 633 RVGVEQEGTYRVVLNTDTKDVGGFERIDAGTRFFTTPFAWNNRKNFIQVYIPTRTALVLA 692

Query: 80  LQS 82
           L+S
Sbjct: 693 LES 695

Source: Sclerotinia sclerotiorum 1980

Species: Sclerotinia sclerotiorum

Genus: Sclerotinia

Family: Sclerotiniaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|68473480|ref|XP_719298.1| likely glycogen branching enzyme [Candida albicans SC5314] gi|46441110|gb|EAL00410.1| likely glycogen branching enzyme [Candida albicans SC5314] gi|238883035|gb|EEQ46673.1| 1,4-alpha-glucan branching enzyme [Candida albicans WO-1]

 Score = 73.2 bits (178), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GVE  G YK+VLDSD    GG  RLD  T Y T+ EPWNNR NS+ +Y+PTRT 
Sbjct: 614 RIGVELPGTYKLVLDSDSEDLGGHGRLDHNTKYFTFNEPWNNRSNSLLVYIPTRTA 669

Source: Candida albicans SC5314

Species: Candida albicans

Genus: Candida

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|68473715|ref|XP_719182.1| likely glycogen branching enzyme [Candida albicans SC5314] gi|46440988|gb|EAL00289.1| likely glycogen branching enzyme [Candida albicans SC5314]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           R+GVE  G YK+VLDSD    GG  RLD  T Y T+ EPWNNR NS+ +Y+PTRT 
Sbjct: 503 RIGVELPGTYKLVLDSDSEDLGGHGRLDHNTKYFTFNEPWNNRSNSLLVYIPTRTA 558

Source: Candida albicans SC5314

Species: Candida albicans

Genus: Candida

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|241956736|ref|XP_002421088.1| 1,4-alpha-glucan-branching enzyme, putative; glycogen-branching enzyme, putative [Candida dubliniensis CD36] gi|223644431|emb|CAX41245.1| 1,4-alpha-glucan-branching enzyme, putative [Candida dubliniensis CD36]

 Score = 72.8 bits (177), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 31/56 (55%), Positives = 39/56 (69%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
           ++GVE  G YK++LDSD    GG  RLD  T Y T+ EPWNNR NS+ +Y+PTRT 
Sbjct: 615 KIGVELPGTYKIILDSDAKELGGHGRLDHNTKYFTFNEPWNNRSNSLLVYIPTRTA 670

Source: Candida dubliniensis CD36

Species: Candida dubliniensis

Genus: Candida

Order: Saccharomycetales

Class: Saccharomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CN82	GLGB_CRYNJ	2, ., 4, ., 1, ., 1, 8	0.5454	0.4198	0.0806	yes	N/A
Q9Y8H3	GLGB_EMENI	2, ., 4, ., 1, ., 1, 8	0.5714	0.4274	0.0818	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	131
PLN02447	758	PLN02447, PLN02447, 1,4-alpha-glucan-branching enz	2e-16
PRK05402	726	PRK05402, PRK05402, glycogen branching enzyme; Pro	1e-09
COG0296	628	COG0296, GlgB, 1,4-alpha-glucan branching enzyme [	1e-06
PRK12313	633	PRK12313, PRK12313, glycogen branching enzyme; Pro	1e-06
pfam02806	92	pfam02806, Alpha-amylase_C, Alpha amylase, C-termi	2e-06
PLN03244	872	PLN03244, PLN03244, alpha-amylase; Provisional	7e-05
PRK14706	639	PRK14706, PRK14706, glycogen branching enzyme; Pro	9e-05
PLN02960	897	PLN02960, PLN02960, alpha-amylase	1e-04
PRK12568	730	PRK12568, PRK12568, glycogen branching enzyme; Pro	1e-04
TIGR01515	618	TIGR01515, branching_enzym, alpha-1,4-glucan:alpha	3e-04

>gnl|CDD|215246 PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 26/55 (47%), Positives = 36/55 (65%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
           RVG ++ GKYK+VLDSD   FGGF R+D    + T    ++NR +S  +Y P+RT
Sbjct: 670 RVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRT 724

Length = 758

>gnl|CDD|235445 PRK05402, PRK05402, glycogen branching enzyme; Provisional

 Score = 54.0 bits (131), Expect = 1e-09
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           R+GV QAG+++ VL++D  H+GG N  + G V      PW+ R +S+ L LP
Sbjct: 664 RLGVPQAGRWREVLNTDAEHYGGSNVGNGGGV-HAEEVPWHGRPHSLSLTLP 714

Length = 726

>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           RVGV  AG+++ VL++D + +GG    + G         W+ R  S+ L LP
Sbjct: 568 RVGVPVAGRWREVLNTDLAEYGGSGAGNLGLPVSGEDILWHGREWSLSLTLP 619

Length = 628

>gnl|CDD|237052 PRK12313, PRK12313, glycogen branching enzyme; Provisional

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           R+GV  AG Y+ +L++D   FGG  + + GTV +    PW+ R  S+ L LP
Sbjct: 568 RIGVPVAGIYEEILNTDSEEFGGSGKGNNGTV-KAQEGPWHGRPQSLTLTLP 618

Length = 633

>gnl|CDD|217237 pfam02806, Alpha-amylase_C, Alpha amylase, C-terminal all-beta domain

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 11/55 (20%)

Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRT 74
          R G+  AG YK VL+SD   +GG               PW+ R   + L LP  +
Sbjct: 40 RTGLPVAGTYKDVLNSDAELYGGSGG--------CVTVPWDGR---LTLTLPPLS 83

Alpha amylase is classified as family 13 of the glycosyl hydrolases. The structure is an 8 stranded alpha/beta barrel containing the active site, interrupted by a ~70 a.a. calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain. Length = 92

>gnl|CDD|178782 PLN03244, PLN03244, alpha-amylase; Provisional

 Score = 40.8 bits (95), Expect = 7e-05
 Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)

Query: 21  VGVEQAGKYKVVLDSDCSHFGGFNRLDPGT-VYETYPEPWNNRRNSIKLYLPTRTGNENK 79
           VGVE+AG+Y+++L+SD + +GG   ++    +  +  +  +  RN ++++LP+RT    K
Sbjct: 806 VGVEEAGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRIDGLRNCLEVFLPSRTAQVYK 865

Query: 80  LQSMKR 85
           L  + R
Sbjct: 866 LSRILR 871

Length = 872

>gnl|CDD|237795 PRK14706, PRK14706, glycogen branching enzyme; Provisional

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           R+GV Q G+Y+V+L +D   +GGF    P  +     E W+ + +S+ L LP
Sbjct: 563 RIGVPQGGEYRVLLSTDDGEYGGFGTQQPDLMASQ--EGWHGQPHSLSLNLP 612

Length = 639

>gnl|CDD|215519 PLN02960, PLN02960, alpha-amylase

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 21  VGVEQAGKYKVVLDSDCSHFGGFNRLDPGT-VYETYPEPWNNRRNSIKLYLPTRTGNENK 79
           VGVE+AG+Y+++L++D   +GG  RL     +  T  +  +  RN ++L LP+R+    K
Sbjct: 831 VGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYK 890

Query: 80  L 80
           L
Sbjct: 891 L 891

Length = 897

>gnl|CDD|139075 PRK12568, PRK12568, glycogen branching enzyme; Provisional

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           RVGV +AG ++ +L++D +H+GG N  + G +  T P   +    S++L LP
Sbjct: 669 RVGVPRAGGWREILNTDSAHYGGSNLGNSGRLA-TEPTGMHGHAQSLRLTLP 719

Length = 730

>gnl|CDD|188150 TIGR01515, branching_enzym, alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPW--NNRRNSIKLYLP 71
           RVGV Q G+Y+ VL+SD   +GG  + + G +     E    + R  S+ + LP
Sbjct: 560 RVGVPQPGQYREVLNSDSETYGGSGQGNKGPL---SAEEGALHGRPCSLTMTLP 610

This model describes the glycogen branching enzymes which are responsible for the transfer of chains of approx. 7 alpha(1--4)-linked glucosyl residues to other similar chains (in new alpha(1--6) linkages) in the biosynthesis of glycogen. This enzyme is a member of the broader amylase family of starch hydrolases which fold as (beta/alpha)8 barrels, the so-called TIM-barrel structure. All of the sequences comprising the seed of this model have been experimentally characterized. (For instance,). This model encompasses both bacterial and eukaryotic species. No archaea have this enzyme, although Aquifex aolicus does. Two species, Bacillus thuringiensis and Clostridium perfringens have two sequences each which are annotated as amylases. These annotations are aparrently in error. GP|18143720 from C. perfringens, for instance, contains the note "674 aa, similar to gp:A14658_1 amylase (1,4-alpha-glucan branching enzyme (EC 2.4.1.18) ) from Bacillus thuringiensis (648 aa); 51.1% identity in 632 aa overlap." A branching enzyme from Porphyromonas gingivales, OMNI|PG1793, appears to be more closely related to the eukaryotic species (across a deep phylogenetic split) and may represent an instance of lateral transfer from this species' host. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 618

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PLN02447	758	1,4-alpha-glucan-branching enzyme	99.65
PLN03244	872	alpha-amylase; Provisional	99.6
PRK12568	730	glycogen branching enzyme; Provisional	99.52
PRK14706	639	glycogen branching enzyme; Provisional	99.5
PLN02960	897	alpha-amylase	99.46
PRK14705	1224	glycogen branching enzyme; Provisional	99.43
PF02806	95	Alpha-amylase_C: Alpha amylase, C-terminal all-bet	99.4
TIGR01515	613	branching_enzym alpha-1,4-glucan:alpha-1,4-glucan	99.24
PRK12313	633	glycogen branching enzyme; Provisional	99.21
PRK05402	726	glycogen branching enzyme; Provisional	99.17
COG0296	628	GlgB 1,4-alpha-glucan branching enzyme [Carbohydra	98.74
KOG0470|consensus	757		98.32

>PLN02447 1,4-alpha-glucan-branching enzyme

Probab=99.65  E-value=4.2e-16  Score=142.92  Aligned_cols=92  Identities=30%  Similarity=0.352  Sum_probs=77.1

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEecc---hh
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQS---MK   84 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~~---~~   84 (131)
                      -||+++++|++|+||||.+|.|++|||||+..|||+++++....+.+.+.+|++++++|+|+|||++|+||+++.   ..
T Consensus       658 ~NF~p~~s~~~Y~igvp~~G~y~~ilnSD~~~fGG~~~~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~~~~~~~  737 (758)
T PLN02447        658 FNFHPTNSYSDYRVGCDKPGKYKIVLDSDAWEFGGFGRVDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPVDEDDEP  737 (758)
T ss_pred             EeCCCCCCCCCcEECCCCCCeEEEEECCCchhcCCCCccCCCccEEecccCcCCCCcEEEEEeCCceEEEEEECCccccc
Confidence            399999999999999999999999999999999999986655668888889999999999999999999999974   33


Q ss_pred             hheeccccccccccc
Q psy9010          85 RYIQTESNMNGFGIQ   99 (131)
Q Consensus        85 ~~~~~~~~~~~~~~~   99 (131)
                      ...++....+.+|+.
T Consensus       738 ~~~~~~~~~~~~~~~  752 (758)
T PLN02447        738 ADRKPVGINGLAGRD  752 (758)
T ss_pred             ccccccccccccccc
Confidence            344444444445443

>PLN03244 alpha-amylase; Provisional

Probab=99.60  E-value=1.6e-15  Score=139.85  Aligned_cols=77  Identities=30%  Similarity=0.506  Sum_probs=68.3

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEe--eecCCCCcccEEEEecCCceEEEEEecchhh
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYET--YPEPWNNRRNSIKLYLPTRTGNENKLQSMKR   85 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t--~~~~~~gr~~sL~I~LPplSaiIfk~~~~~~   85 (131)
                      -||+|.++|++|+||||.+|.|++|||||+..|||+++++.. .+.+  .+.+|++++++|+|+|||++|+||++.++.|
T Consensus       793 fNF~P~~sy~dYrIGVp~~G~Y~eILNSD~~~FGG~g~~~~~-~~~t~~~~~~~~gr~~sl~l~LPprsavVlk~~~~~~  871 (872)
T PLN03244        793 FNFHPSNSYEGYDVGVEEAGEYQIILNSDETKYGGQGIIEED-HYLQRSINKRIDGLRNCLEVFLPSRTAQVYKLSRILR  871 (872)
T ss_pred             EeCCCCCCccCCEECCCCCCeEEEEEeCChhhhCCCCccCCC-ceeecccccccCCCCceEEEEeCCCEEEEEEEeeEee
Confidence            399999999999999999999999999999999999975433 3554  5567999999999999999999999998876

>PRK12568 glycogen branching enzyme; Provisional

Probab=99.52  E-value=3e-14  Score=130.43  Aligned_cols=72  Identities=26%  Similarity=0.358  Sum_probs=65.7

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      -||.+. .+++|+||||.+|.|++|||||+.+|||++. .+...+.+.+.+|+++++||+|+|||++++||++.
T Consensus       658 ~Nft~~-~~~~Y~ig~p~~G~~~eilNsd~~~ygG~~~-~n~~~~~~~~~~~~g~~~s~~i~lppl~~~~~~~~  729 (730)
T PRK12568        658 SNLTPQ-PHHDYRVGVPRAGGWREILNTDSAHYGGSNL-GNSGRLATEPTGMHGHAQSLRLTLPPLATIYLQAE  729 (730)
T ss_pred             ECCCCC-CccCeEECCCCCCeEEEEEcCchhhhCCCCc-CCCCceeecccccCCCccEEEEEeCCCEEEEEEEC
Confidence            378776 7999999999999999999999999999986 66667888999999999999999999999999975

>PRK14706 glycogen branching enzyme; Provisional

Probab=99.50  E-value=4.6e-14  Score=127.33  Aligned_cols=71  Identities=25%  Similarity=0.381  Sum_probs=64.6

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      -||++ ..+++|+||||.+|.|++|||||+.+|||+++. +. .+.+...+|++++++|+|+|||++++||++.
T Consensus       552 ~Nfs~-~~~~~y~ig~p~~g~~~~i~nsd~~~~gG~g~~-n~-~~~~~~~~~~g~~~si~i~lp~~~~~~~~~~  622 (639)
T PRK14706        552 ANLTP-VYREQYRIGVPQGGEYRVLLSTDDGEYGGFGTQ-QP-DLMASQEGWHGQPHSLSLNLPPSSVLILEFV  622 (639)
T ss_pred             EeCCC-CCcCCeEECCCCCCeEEEEEcCCccccCCCCCC-CC-ceeccccccCCCccEEEEEeCCcEEEEEEEC
Confidence            38888 689999999999999999999999999999974 33 5788888999999999999999999999987

>PLN02960 alpha-amylase

Probab=99.46  E-value=1.4e-13  Score=128.06  Aligned_cols=78  Identities=31%  Similarity=0.479  Sum_probs=68.4

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceE-EeeecCCCCcccEEEEecCCceEEEEEecchhh
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVY-ETYPEPWNNRRNSIKLYLPTRTGNENKLQSMKR   85 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~-~t~~~~~~gr~~sL~I~LPplSaiIfk~~~~~~   85 (131)
                      -||++..++.+|+||||.+|.|++|||||+..|||.++....... .+...+|++++++|.|+|||++++||++.++.|
T Consensus       818 ~NFsp~~~~~~Y~vgvP~~G~y~eilNSD~~~yGG~g~~~~~~~~~~t~~~~~~g~~~si~i~LPp~sa~v~k~~~~~~  896 (897)
T PLN02960        818 FNFHPTNSYEEYEVGVEEAGEYELILNTDEVKYGGQGRLTEDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYKLARILR  896 (897)
T ss_pred             EeCCCCCcCcCceECCCCCCcEEEEEeCchhhcCCCCccCCCcceeeccccccCCCCceEEEEeCCCEEEEEEEeeeec
Confidence            499998899999999999999999999999999999875433223 567788999999999999999999999987765

>PRK14705 glycogen branching enzyme; Provisional

Probab=99.43  E-value=2.9e-13  Score=129.32  Aligned_cols=72  Identities=17%  Similarity=0.160  Sum_probs=65.9

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      -||.+ ..+++|+||||.+|.|++|||||+.+|||++. .+...+.+.+.+|+++++||+|+|||++++||++.
T Consensus      1152 ~Nftp-~~~~~y~igvp~~G~y~eilnsd~~~ygGsg~-~n~~~~~~~~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705       1152 INFSG-GPHKGYTLGVPAAGAWTEVLNTDHETYGGSGV-LNPGSLKATTEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred             EcCCC-CCccCceECCCCCCeEEEEEeCchhhcCCCCc-CCCCceeecccccCCCCceEEEEecCCEEEEEEEC
Confidence            48877 69999999999999999999999999999987 55667888888999999999999999999999975

>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3

Probab=99.40  E-value=1.2e-13  Score=94.97  Aligned_cols=67  Identities=30%  Similarity=0.377  Sum_probs=55.0

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      -||.+...+.+|++|+|.+|+|++|||||+..|||++. .....+.   ..++++   ++|+|||++++||+.+
T Consensus        28 ~Nf~~~~~~~~~~~~~p~~g~y~~vlnsd~~~~~g~~~-~~~~~v~---~~~~g~---~~~~lp~~s~~vl~~~   94 (95)
T PF02806_consen   28 FNFSPEAVYEDYRIGVPEAGRYKEVLNSDDEEYGGSGK-GNSGEVT---VDSNGR---ITVTLPPYSALVLKLK   94 (95)
T ss_dssp             EESSSS-EEEEEEECSSSSEEEEETTTTTCEEEEESSC-SETSEEE---EETTSE---EEEEESTTEEEEEEEE
T ss_pred             EECCCcccceeEEeCCCCcceeeEEeCCCccEECCccc-ccCceEE---EeeCCE---EEEEECCCEEEEEEEc
Confidence            48888879999999999999999999999999999876 4333333   334554   8999999999999875

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....

>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase

Probab=99.24  E-value=1.7e-11  Score=109.85  Aligned_cols=69  Identities=25%  Similarity=0.309  Sum_probs=61.0

Q ss_pred             cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEE
Q psy9010           9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENK   79 (131)
Q Consensus         9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk   79 (131)
                      ||.+ ..+.+|+|++|.+|.|++|||||+.+|||.++. +.....+....|++++++|.|+|||++++||+
T Consensus       545 N~~~-~~~~~Y~i~~p~~g~~~~il~Sd~~~~gG~g~~-~~~~~~~~~~~~~g~~~~i~i~iP~~~~~~~~  613 (613)
T TIGR01515       545 NFTP-VVRHQYRVGVPQPGQYREVLNSDSETYGGSGQG-NKGPLSAEEGALHGRPCSLTMTLPPLATSWLR  613 (613)
T ss_pred             eCCC-CCccceEeCCCCCCeEEEEEeCChhhcCCCCcC-CCCceeccccccCCCCCEEEEEeCCcEEEEeC
Confidence            7766 578999999999999999999999999999874 44456777778999999999999999999985

A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.

>PRK12313 glycogen branching enzyme; Provisional

Probab=99.21  E-value=4e-11  Score=107.48  Aligned_cols=73  Identities=26%  Similarity=0.397  Sum_probs=64.3

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEecc
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQS   82 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~~   82 (131)
                      -||.+ ..+++|+|++|.+|.|++|||||+.+|||+++ .+...+.+....|++++++|.|+|||++++||+++.
T Consensus       557 ~N~s~-~~~~~y~i~~p~~g~~~~ilnsd~~~ygG~~~-~~~~~~~~~~~~~~g~~~~~~i~ip~~s~~v~~~~~  629 (633)
T PRK12313        557 FNFTP-VEREDYRIGVPVAGIYEEILNTDSEEFGGSGK-GNNGTVKAQEGPWHGRPQSLTLTLPPLGALVLKPKR  629 (633)
T ss_pred             EeCCC-CcccceeECCCCCCeEEEEEcCCchhcCCCCc-CCCCceeecccccCCCCCEEEEEeCCCEEEEEEEcc
Confidence            37766 46889999999999999999999999999987 455567777788999999999999999999999874

>PRK05402 glycogen branching enzyme; Provisional

Probab=99.17  E-value=7e-11  Score=107.66  Aligned_cols=71  Identities=31%  Similarity=0.469  Sum_probs=63.4

Q ss_pred             cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      ||.+ ..+++|+|++|.+|.|++|||||+.+|||++. .+...+.+.+.+|+++++++.|+|||+|++||++.
T Consensus       654 N~~~-~~~~~y~i~~p~~g~~~~ilnsd~~~~gg~~~-~~~~~~~~~~~~~~g~~~~~~i~lp~~~~~v~~~~  724 (726)
T PRK05402        654 NFTP-VPRHDYRLGVPQAGRWREVLNTDAEHYGGSNV-GNGGGVHAEEVPWHGRPHSLSLTLPPLATLILKPE  724 (726)
T ss_pred             eCCC-CcccceEECCCCCCeEEEEEcCcchhhCCCCC-CCCCceeccccccCCCCCEEEEEeCCCEEEEEEEc
Confidence            7765 57889999999999999999999999999987 34456788888999999999999999999999985

>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]

Probab=98.74  E-value=1.1e-08  Score=92.99  Aligned_cols=73  Identities=26%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             cccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCce-EEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010           7 ERQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTV-YETYPEPWNNRRNSIKLYLPTRTGNENKL   80 (131)
Q Consensus         7 ~~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~-~~t~~~~~~gr~~sL~I~LPplSaiIfk~   80 (131)
                      -.|++..+.+.+|++|+|..|.|+++||||+..|||++. .+... +.++...++++.+++++.|||+++++|+.
T Consensus       555 ~~~n~~~~~~~~y~~~~~~~g~~~~~lntd~~~~ggs~~-~~~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~~  628 (628)
T COG0296         555 VVNNFTPVPRVDYRVGVPVAGRWREVLNTDLAEYGGSGA-GNLGLPVSGEDILWHGREWSLSLTLPPLAALVLKL  628 (628)
T ss_pred             EEeCCCCCcccccccCCcccccEEEeccchHHHhcCCcc-ccccceecceeeeccCcceeeEEecCCceeeEeeC
Confidence            356778889999999999999999999999999999987 33444 88888889999999999999999999873

>KOG0470|consensus

Probab=98.32  E-value=1.1e-06  Score=81.14  Aligned_cols=74  Identities=34%  Similarity=0.528  Sum_probs=67.2

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      -||++..++.+|+||+..+|.|++|||||...|||+.++.......+....+++++..+.+++|...|+|+...
T Consensus       680 fn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~VY~~~~~a~vl~~~  753 (757)
T KOG0470|consen  680 FNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQVYIPSRTATVLALL  753 (757)
T ss_pred             EEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEEEeccCcceEeeec
Confidence            38999999999999999999999999999999999998866556667778889999999999999999999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
3aml_A	755	Structure Of The Starch Branching Enzyme I (Bei) Fr		3e-05
3amk_A	702	Structure Of The Starch Branching Enzyme I (Bei) Fr		8e-05

>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 755

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 71
           +VG +  GKY+V LDSD   FGG  R+     + T PE         +NNR NS K+  P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 72  TRT 74
            RT
Sbjct: 684 PRT 686

>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From Oryza Sativa L Length = 702

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEP--------WNNRRNSIKLYLP 71
           +VG +  GKY+V LDSD   FGG  R+     + T PE         +NNR NS K+  P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683
Query: 72  TRT 74
            RT
Sbjct: 684 PRT 686

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	6e-18
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	2e-11
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A Length = 755

 Score = 77.4 bits (191), Expect = 6e-18
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 8/64 (12%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPE--------PWNNRRNSIKLYLP 71
           +VG +  GKY+V LDSD   FGG  R+     + T PE         +NNR NS K+  P
Sbjct: 624 KVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSP 683

Query: 72  TRTG 75
            RT 
Sbjct: 684 PRTC 687

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis} Length = 722

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           R+G+ +AG+++ VL++D + + G    + G V +   +PW+ R  S  L LP
Sbjct: 662 RLGLPRAGRWREVLNTDATIYHGSGIGNLGGV-DATDDPWHGRPASAVLVLP 712

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A* Length = 617

 Score = 58.7 bits (143), Expect = 2e-11
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 20  RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLP 71
           R G+ Q GK++ +L++D  H+ G N  + GTV  +     + R++S+ L LP
Sbjct: 555 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLP 605

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 20/92 (21%)

Query: 47  DPGTVYETYPEPWNNRRNSIKLYLP---TRTGNENKLQSMKRYIQTESN-----MNGFGI 98
            P  +   Y E  +   N  +++     +R     KL+     ++   N     + G G 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 99  QTLPTQSPLYLVAKIEKPCSTREVVKAPLPFG 130
                     +   +   C + +V    + F 
Sbjct: 164 TW--------VALDV---CLSYKVQCK-MDFK 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
3k1d_A	722	1,4-alpha-glucan-branching enzyme; mycobacterium t	99.29
3aml_A	755	OS06G0726400 protein; starch-branching, transferas	99.13
1m7x_A	617	1,4-alpha-glucan branching enzyme; alpha/beta barr	98.86
1ua7_A	422	Alpha-amylase; beta-alpha-barrels, acarbose, greek	83.26

>3k1d_A 1,4-alpha-glucan-branching enzyme; mycobacterium tuberculosis H37RV, mesophilic human pathogen, RV1326C gene, glycosyl transferase; 2.33A {Mycobacterium tuberculosis}

Probab=99.29  E-value=2.9e-12  Score=115.56  Aligned_cols=70  Identities=21%  Similarity=0.325  Sum_probs=63.5

Q ss_pred             cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010           9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKL   80 (131)
Q Consensus         9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~   80 (131)
                      ||.+. .+++|+||||.+|.|++|||||+..|||++. .+...+.+.+.+|++++++++|+|||++++||++
T Consensus       652 N~s~~-~~~~y~igvp~~G~~~eilnsd~~~ygG~~~-~~~~~~~~~~~~~~g~~~s~~l~lpp~~~~~~~~  721 (722)
T 3k1d_A          652 NFAGA-EHRDYRLGLPRAGRWREVLNTDATIYHGSGI-GNLGGVDATDDPWHGRPASAVLVLPPTSALWLTP  721 (722)
T ss_dssp             ECSSS-CEEEEEEEESSCEEEEEEEETTCGGGTSCCC-SCTTEEEEESCCBTTBSEEEEEEECTTEEEEEEE
T ss_pred             eCCCC-CceeEEeccCCCCEEEEEeeCchhhcCCCCc-CCCCeEEEeeeccCCeeeEEEEEECCCEEEEEEE
Confidence            77654 6789999999999999999999999999987 5556788999999999999999999999999986

>3aml_A OS06G0726400 protein; starch-branching, transferase; HET: EPE; 1.70A {Oryza sativa japonica group} PDB: 3amk_A

Probab=99.13  E-value=7.4e-11  Score=106.61  Aligned_cols=76  Identities=32%  Similarity=0.371  Sum_probs=65.4

Q ss_pred             ccCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEee--------ecCCCCcccEEEEecCCceEEEEE
Q psy9010           8 RQYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETY--------PEPWNNRRNSIKLYLPTRTGNENK   79 (131)
Q Consensus         8 ~nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~--------~~~~~gr~~sL~I~LPplSaiIfk   79 (131)
                      -||.+..++.+|+||||.+|.|++|||||+..|||++.+++...+.+.        +.++++++++++|+|||++++||+
T Consensus       612 ~N~s~~~~~~~~~i~vp~~g~~~~vlnsd~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lPp~s~~vl~  691 (755)
T 3aml_A          612 FNFHPNKTYKGYKVGCDLPGKYRVALDSDALVFGGHGRVGHDVDHFTSPEGMPGVPETNFNNRPNSFKVLSPPRTCVAYY  691 (755)
T ss_dssp             EECCSSCCEEEEEEEESSCSEEEEEEETTSGGGTSCCCSCTTCCEECEECSCTTCGGGSBTTBSEEEEEEECTTEEEEEE
T ss_pred             EECCCCCccceeEECCCCCCeEEEEEeCCccccCCccccCCccceecccccccccccccccCCCCeEEEEECCCEEEEEE
Confidence            388888789999999999999999999999999998865444456664        467899999999999999999999


Q ss_pred             ecch
Q psy9010          80 LQSM   83 (131)
Q Consensus        80 ~~~~   83 (131)
                      ....
T Consensus       692 ~~~~  695 (755)
T 3aml_A          692 RVDE  695 (755)
T ss_dssp             ECCT
T ss_pred             EcCc
Confidence            8753

>1m7x_A 1,4-alpha-glucan branching enzyme; alpha/beta barrel, beta sandwich, transferase; 2.30A {Escherichia coli} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB: 3o7y_A* 3o7z_A*

Probab=98.86  E-value=1.5e-09  Score=95.16  Aligned_cols=71  Identities=23%  Similarity=0.278  Sum_probs=62.3

Q ss_pred             cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010           9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus         9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      ||.+ ..+.+|+||+|.+|.|++|||||+..|||++.. +...+.+...++++++++++|+|||++++||+.+
T Consensus       545 N~s~-~~~~~~~i~~p~~g~~~~~l~sd~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~lpp~s~~vl~~~  615 (617)
T 1m7x_A          545 NFTP-VPRHDYRFGINQPGKWREILNTDSMHYHGSNAG-NGGTVHSDEIASHGRQHSLSLTLPPLATIWLVRE  615 (617)
T ss_dssp             ECSS-CCEEEECCBCSSCSEEEEEEETTSTGGGCCCCS-CCSCEECBSCCBTTBSCBCCEEECTTEEEEEEEE
T ss_pred             CCCC-CCccceEECCCCCCeEEEEEeCcccccCCCCcC-CCCcccccccccCCCCceEEEEECCCEEEEEEEc
Confidence            6666 467789999999999999999999999998874 3456888888999999999999999999999865

>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif, hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A

Probab=83.26  E-value=0.51  Score=38.74  Aligned_cols=41  Identities=7%  Similarity=0.064  Sum_probs=27.7

Q ss_pred             CCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEe
Q psy9010          18 FPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKL   80 (131)
Q Consensus        18 dYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~   80 (131)
                      .+.+++| +|.|+.+|+++              .+.+ .      ..++++.|||++++||++
T Consensus       381 ~~~~~l~-~g~~~d~l~~~--------------~~~~-~------~~~~~~~lpp~~~~vl~~  421 (422)
T 1ua7_A          381 NTATKLP-DGRYDNKAGAG--------------SFQV-N------DGKLTGTINARSVAVLYP  421 (422)
T ss_dssp             EEECCSC-SEEEECTTSSC--------------EEEE-E------TTEEEEEECTTEEEEECC
T ss_pred             EEecccC-CCeeeeeecCc--------------eEEe-e------CCEEEEEECCCceEEEeC
Confidence            4555777 67788777642              1221 1      147899999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1m7xa2	106	b.71.1.1 (A:623-728) 1,4-alpha-glucan branching en	1e-13

>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} Length = 106

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: alpha-Amylases, C-terminal beta-sheet domain
domain: 1,4-alpha-glucan branching enzyme
species: Escherichia coli [TaxId: 562]

 Score = 60.2 bits (146), Expect = 1e-13
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTG 75
          R G+ Q GK++ +L++D  H+ G N  + GTV  +     + R++S+ L LP    
Sbjct: 44 RFGINQPGKWREILNTDSMHYHGSNAGNGGTV-HSDEIASHGRQHSLSLTLPPLAT 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1m7xa2	106	1,4-alpha-glucan branching enzyme {Escherichia col	99.85
d1wzaa1	79	Bacterial alpha-Amylase {Halothermothrix orenii [T	87.68

>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: alpha-Amylases, C-terminal beta-sheet domain
domain: 1,4-alpha-glucan branching enzyme
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.3e-22  Score=143.02  Aligned_cols=72  Identities=22%  Similarity=0.300  Sum_probs=67.1

Q ss_pred             cCCCCCccCCCEEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEecc
Q psy9010           9 QYLHQHSILFPRVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQS   82 (131)
Q Consensus         9 nf~s~~syedYrIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~~   82 (131)
                      ||++ ++|++|+||||.+|+|++|||||+++|||++. .+...+++..+++++++++|+|+||||||+||+++.
T Consensus        34 Nfsp-~~~~~Y~igvp~~G~~~~ilNTD~~~ygGsg~-~~~~~~~~~~~~~~g~~~si~l~lPp~sav~~k~~~  105 (106)
T d1m7xa2          34 NFTP-VPRHDYRFGINQPGKWREILNTDSMHYHGSNA-GNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREA  105 (106)
T ss_dssp             ECSS-CCEEEECCBCSSCSEEEEEEETTSTGGGCCCC-SCCSCEECBSCCBTTBSCBCCEEECTTEEEEEEEEC
T ss_pred             eCCC-CccCcEEcCCCCCCeEEEEEcCCccccCCcCc-CCCCeEEeeecCcCCcceEEEEEcCCCEEEEEEEcC
Confidence            8888 59999999999999999999999999999987 556779999999999999999999999999999863

>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}

class: All beta proteins
fold: Glycosyl hydrolase domain
superfamily: Glycosyl hydrolase domain
family: alpha-Amylases, C-terminal beta-sheet domain
domain: Bacterial alpha-Amylase
species: Halothermothrix orenii [TaxId: 31909]

Probab=87.68  E-value=0.47  Score=29.81  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             EEccCCCCeEEEEEcCCCCCCCCCCcCCCCceEEeeecCCCCcccEEEEecCCceEEEEEec
Q psy9010          20 RVGVEQAGKYKVVLDSDCSHFGGFNRLDPGTVYETYPEPWNNRRNSIKLYLPTRTGNENKLQ   81 (131)
Q Consensus        20 rIGVP~~G~YkeILNSD~~~YGGsg~v~~~~~~~t~~~~~~gr~~sL~I~LPplSaiIfk~~   81 (131)
                      .|.| ..|.|.++|||-++..-            ..+     ...-+..+||++++++++++
T Consensus        36 kikv-asgnwtllfnsgdkeit------------pve-----dnnklmytipayttivleke   79 (79)
T d1wzaa1          36 KIKV-ASGNWTLLFNSGDKEIT------------PVE-----DNNKLMYTIPAYTTIVLEKE   79 (79)
T ss_dssp             EEEE-ESSCEEEEEESSSSCCC------------CEE-----CSSEEEEEECTTCEEEEEEC
T ss_pred             EEEE-ecCcEEEEEccCCceec------------ccc-----cCCEEEEEecceEEEEEecC
Confidence            4555 47999999999554321            011     12358899999999999863