Psyllid ID: psy9036

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
DILSNRAIQRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAITTNGEVKGGM
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccEEEEEEEccHHccccHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHcccccccccccccEcEEHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
dilsnraiqrapdgtsiadatggagsnthgvKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSaittngevkggecmsysqksqiyinrgDVLSCVVVCIITTLSLSaittngevkggm
Flexible Loop (DISEMBL)
dilsnraiqrapdgtsiadatggagSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLslsaittngevkggm
Low Complexity Region (SEG)
DILSNRAIQRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCiittlslsaittNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCiittlslsaittNGEVKGGM
Disordered region (IsUnstruct)
***************************THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAIT*********
Disordered Region (DISOPRED)
**********************************WIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAITTNGEVKGGM
Disordered Region (DISEMBL)
DILSNRAIQRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAITTNGEVKGGM
Disordered Region (DISPRO)
****************************HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAITTNG******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DILSNRAIQRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIYINRGDVLSCVVVCIITTLSLSAITTNGEVKGGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q25479	1060	Bumetanide-sensitive sodi	N/A	N/A	0.482	0.065	0.797	7e-26
P55013	1191	Solute carrier family 12	N/A	N/A	0.475	0.057	0.661	4e-21
P55012	1205	Solute carrier family 12	yes	N/A	0.601	0.071	0.551	6e-21
P55011	1212	Solute carrier family 12	yes	N/A	0.601	0.070	0.540	4e-20
P55015	1099	Solute carrier family 12	no	N/A	0.482	0.062	0.637	5e-18
Q13621	1099	Solute carrier family 12	no	N/A	0.475	0.061	0.632	1e-17
P55014	1095	Solute carrier family 12	no	N/A	0.475	0.062	0.632	1e-17
P55016	1095	Solute carrier family 12	no	N/A	0.475	0.062	0.632	9e-16
P55018	1002	Solute carrier family 12	no	N/A	0.573	0.081	0.488	1e-15
P59158	1002	Solute carrier family 12	no	N/A	0.573	0.081	0.488	2e-15

>sp|Q25479|NKCL_MANSE Bumetanide-sensitive sodium-(potassium)-chloride cotransporter OS=Manduca sexta PE=2 SV=1

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 62/69 (89%)

Query: 30  GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAI 89
           G+KLGWI GV IPCLLNIWGVMLFLR++WVV +AGIG SLVII IS +VC+ITTLS+SAI
Sbjct: 120 GIKLGWIQGVFIPCLLNIWGVMLFLRLSWVVSQAGIGLSLVIIAISAIVCVITTLSMSAI 179

Query: 90  TTNGEVKGG 98
            TNGEVKGG
Sbjct: 180 CTNGEVKGG 188

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.
Manduca sexta (taxid: 7130)

>sp|P55013|S12A2_SQUAC Solute carrier family 12 member 2 OS=Squalus acanthias GN=SLC12A2 PE=1 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           VK GWI GVL+ C+LNIWGVMLF+R++W+VG AGIG +L++IG + VV  IT LS SAIT
Sbjct: 255 VKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGHAGIGLALLVIGTATVVTTITGLSTSAIT 314

Query: 91  TNGEVKGG 98
           TNG V+GG
Sbjct: 315 TNGFVRGG 322

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Squalus acanthias (taxid: 7797)

>sp|P55012|S12A2_MOUSE Solute carrier family 12 member 2 OS=Mus musculus GN=Slc12a2 PE=1 SV=2

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 48/87 (55%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 13  DGTSIADATGGAGSNTHGV-KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
           + T   DA     + + GV K GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+V+
Sbjct: 257 ESTPTRDAVVAYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVVV 316

Query: 72  IGISYVVCIITTLSLSAITTNGEVKGG 98
           I ++ VV  IT LS SAI TNG V+GG
Sbjct: 317 IAMATVVTTITGLSTSAIATNGFVRGG 343

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Mus musculus (taxid: 10090)

>sp|P55011|S12A2_HUMAN Solute carrier family 12 member 2 OS=Homo sapiens GN=SLC12A2 PE=1 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 47/87 (54%), Positives = 63/87 (72%), Gaps = 1/87 (1%)

Query: 13  DGTSIADATGGAGSNTHGV-KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
           + T   DA     + + GV K GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+++
Sbjct: 264 ESTPTRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLV 323

Query: 72  IGISYVVCIITTLSLSAITTNGEVKGG 98
           I ++ VV  IT LS SAI TNG V+GG
Sbjct: 324 IMMATVVTTITGLSTSAIATNGFVRGG 350

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Homo sapiens (taxid: 9606)

>sp|P55015|S12A1_RABIT Solute carrier family 12 member 1 OS=Oryctolagus cuniculus GN=SLC12A1 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/69 (63%), Positives = 55/69 (79%)

Query: 30  GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAI 89
            VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  +VII +S +V  IT LS SAI
Sbjct: 174 AVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVVIILLSTMVTSITGLSTSAI 233

Query: 90  TTNGEVKGG 98
            TNG V+GG
Sbjct: 234 ATNGFVRGG 242

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q13621|S12A1_HUMAN Solute carrier family 12 member 1 OS=Homo sapiens GN=SLC12A1 PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 55/68 (80%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++II +S +V  IT LS SAI 
Sbjct: 175 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTSAIA 234

Query: 91  TNGEVKGG 98
           TNG V+GG
Sbjct: 235 TNGFVRGG 242

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Homo sapiens (taxid: 9606)

>sp|P55014|S12A1_MOUSE Solute carrier family 12 member 1 OS=Mus musculus GN=Slc12a1 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 55/68 (80%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++II +S +V  IT LS SAI 
Sbjct: 171 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTSAIA 230

Query: 91  TNGEVKGG 98
           TNG V+GG
Sbjct: 231 TNGFVRGG 238

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Mus musculus (taxid: 10090)

>sp|P55016|S12A1_RAT Solute carrier family 12 member 1 OS=Rattus norvegicus GN=Slc12a1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 43/68 (63%), Positives = 57/68 (83%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++IIG+S VV  +T +S+SAI 
Sbjct: 171 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVIIIGLSVVVTTLTGISMSAIC 230

Query: 91  TNGEVKGG 98
           TNG V+GG
Sbjct: 231 TNGVVRGG 238

Electrically silent transporter system. Mediates sodium and chloride reabsorption. Plays a vital role in the regulation of ionic balance and cell volume.

Rattus norvegicus (taxid: 10116)

>sp|P55018|S12A3_RAT Solute carrier family 12 member 3 OS=Rattus norvegicus GN=Slc12a3 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 2/84 (2%)

Query: 17  IADATGGAGSNTHG--VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGI 74
           + D TG     + G  V+ GW+ GV+I C+LNIWGV+L+LR+ W+  +AGI  + +II +
Sbjct: 116 VEDETGANSEKSPGEPVRFGWVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIILL 175

Query: 75  SYVVCIITTLSLSAITTNGEVKGG 98
           S +V  IT LS+SAI+TNG+VK G
Sbjct: 176 SVMVTSITGLSISAISTNGKVKSG 199

Electrically silent transporter system. Mediates sodium and chloride reabsorption.

Rattus norvegicus (taxid: 10116)

>sp|P59158|S12A3_MOUSE Solute carrier family 12 member 3 OS=Mus musculus GN=Slc12a3 PE=1 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 59/84 (70%), Gaps = 2/84 (2%)

Query: 17  IADATGGAGSNTHG--VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGI 74
           + D TG     + G  V+ GW+ GV+I C+LNIWGV+L+LR+ W+  +AGI  + +II +
Sbjct: 116 VEDETGTNSEKSPGEPVRFGWVKGVMIRCMLNIWGVILYLRLPWITAQAGIVLTWLIILL 175

Query: 75  SYVVCIITTLSLSAITTNGEVKGG 98
           S +V  IT LS+SAI+TNG+VK G
Sbjct: 176 SVMVTSITGLSISAISTNGKVKSG 199

Electrically silent transporter system. Mediates sodium and chloride reabsorption.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
189234531	1026	PREDICTED: similar to bumetanide sensiti	0.622	0.086	0.736	3e-28
195452170	1081	GK14023 [Drosophila willistoni] gi|19416	0.622	0.082	0.688	9e-27
195568442	1053	GD19613 [Drosophila simulans] gi|1941981	0.517	0.070	0.75	2e-26
195497362	1068	GE25275 [Drosophila yakuba] gi|194182167	0.517	0.069	0.75	3e-26
194898761	1068	GG10986 [Drosophila erecta] gi|190650639	0.517	0.069	0.75	3e-26
24644253	1068	CG31547, isoform B [Drosophila melanogas	0.517	0.069	0.75	3e-26
195391968	1081	GJ24561 [Drosophila virilis] gi|19415271	0.559	0.074	0.701	6e-26
24644255	995	CG31547, isoform A [Drosophila melanogas	0.517	0.074	0.75	7e-26
195152489	1062	GL22161 [Drosophila persimilis] gi|19411	0.475	0.064	0.838	7e-26
125776682	1062	GA16316, isoform A [Drosophila pseudoobs	0.475	0.064	0.838	7e-26

>gi|189234531|ref|XP_967948.2| PREDICTED: similar to bumetanide sensitive NaK2Cl cotransporter isoform 1 [Tribolium castaneum] gi|270001701|gb|EEZ98148.1| hypothetical protein TcasGA2_TC000573 [Tribolium castaneum]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/91 (73%), Positives = 77/91 (84%), Gaps = 2/91 (2%)

Query: 8   IQRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGH 67
           ++R P+GTS  +     GS+  G+KLGWI GVLIPCLLNI+GVMLFLR++WVV EAGIG 
Sbjct: 84  VKREPNGTS-EEEVPAPGSH-DGIKLGWIQGVLIPCLLNIFGVMLFLRLSWVVAEAGIGQ 141

Query: 68  SLVIIGISYVVCIITTLSLSAITTNGEVKGG 98
           SLVIIGIS VVCIITTLSLSAI+TNGEVKGG
Sbjct: 142 SLVIIGISAVVCIITTLSLSAISTNGEVKGG 172

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195452170|ref|XP_002073243.1| GK14023 [Drosophila willistoni] gi|194169328|gb|EDW84229.1| GK14023 [Drosophila willistoni]

 Score =  124 bits (312), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 62/90 (68%), Positives = 72/90 (80%), Gaps = 1/90 (1%)

Query: 9   QRAPDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHS 68
           + A    +I DAT    +  H +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  S
Sbjct: 123 EAAEQSITIPDATEPEPTGGH-IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQS 181

Query: 69  LVIIGISYVVCIITTLSLSAITTNGEVKGG 98
           L+II IS VVC+ITTLSLSAI+TNGEVKGG
Sbjct: 182 LIIITISAVVCVITTLSLSAISTNGEVKGG 211

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195568442|ref|XP_002102225.1| GD19613 [Drosophila simulans] gi|194198152|gb|EDX11728.1| GD19613 [Drosophila simulans]

 Score =  123 bits (309), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 6/80 (7%)

Query: 19  DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
           +ATGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct: 128 EATGGH------IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 181

Query: 79  CIITTLSLSAITTNGEVKGG 98
           C+ITTLSLSAI+TNGEVKGG
Sbjct: 182 CVITTLSLSAISTNGEVKGG 201

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195497362|ref|XP_002096066.1| GE25275 [Drosophila yakuba] gi|194182167|gb|EDW95778.1| GE25275 [Drosophila yakuba]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 6/80 (7%)

Query: 19  DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
           +ATGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct: 128 EATGGH------IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 181

Query: 79  CIITTLSLSAITTNGEVKGG 98
           C+ITTLSLSAI+TNGEVKGG
Sbjct: 182 CVITTLSLSAISTNGEVKGG 201

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194898761|ref|XP_001978936.1| GG10986 [Drosophila erecta] gi|190650639|gb|EDV47894.1| GG10986 [Drosophila erecta]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 6/80 (7%)

Query: 19  DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
           +ATGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct: 128 EATGGH------IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 181

Query: 79  CIITTLSLSAITTNGEVKGG 98
           C+ITTLSLSAI+TNGEVKGG
Sbjct: 182 CVITTLSLSAISTNGEVKGG 201

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644253|ref|NP_730938.1| CG31547, isoform B [Drosophila melanogaster] gi|21483278|gb|AAM52614.1| GH09711p [Drosophila melanogaster] gi|23170363|gb|AAF52017.2| CG31547, isoform B [Drosophila melanogaster] gi|220947470|gb|ACL86278.1| CG31547-PB [synthetic construct]

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 6/80 (7%)

Query: 19  DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
           +ATGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct: 128 EATGGH------IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 181

Query: 79  CIITTLSLSAITTNGEVKGG 98
           C+ITTLSLSAI+TNGEVKGG
Sbjct: 182 CVITTLSLSAISTNGEVKGG 201

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195391968|ref|XP_002054631.1| GJ24561 [Drosophila virilis] gi|194152717|gb|EDW68151.1| GJ24561 [Drosophila virilis]

 Score =  122 bits (305), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/87 (70%), Positives = 69/87 (79%), Gaps = 7/87 (8%)

Query: 12  PDGTSIADATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
           PD     + TGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+I
Sbjct: 133 PDAAE-PEPTGG------NIKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGIMWSLII 185

Query: 72  IGISYVVCIITTLSLSAITTNGEVKGG 98
           I IS VVC+ITTLSLSAI+TNGEVKGG
Sbjct: 186 IAISTVVCVITTLSLSAISTNGEVKGG 212

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24644255|ref|NP_730939.1| CG31547, isoform A [Drosophila melanogaster] gi|23170364|gb|AAF52018.2| CG31547, isoform A [Drosophila melanogaster]

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/80 (75%), Positives = 68/80 (85%), Gaps = 6/80 (7%)

Query: 19  DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
           +ATGG       +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct: 55  EATGGH------IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 108

Query: 79  CIITTLSLSAITTNGEVKGG 98
           C+ITTLSLSAI+TNGEVKGG
Sbjct: 109 CVITTLSLSAISTNGEVKGG 128

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195152489|ref|XP_002017169.1| GL22161 [Drosophila persimilis] gi|194112226|gb|EDW34269.1| GL22161 [Drosophila persimilis]

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VVCIITTLSLSAI+
Sbjct: 128 IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVVCIITTLSLSAIS 187

Query: 91  TNGEVKGG 98
           TNGEVKGG
Sbjct: 188 TNGEVKGG 195

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125776682|ref|XP_001359356.1| GA16316, isoform A [Drosophila pseudoobscura pseudoobscura] gi|54639099|gb|EAL28501.1| GA16316, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score =  121 bits (304), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 31  VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAIT 90
           +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VVCIITTLSLSAI+
Sbjct: 128 IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVVCIITTLSLSAIS 187

Query: 91  TNGEVKGG 98
           TNGEVKGG
Sbjct: 188 TNGEVKGG 195

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
FB|FBgn0051547	1068	CG31547 [Drosophila melanogast	0.517	0.069	0.637	1.4e-19
UNIPROTKB|F1NR57	1104	SLC12A2 "Uncharacterized prote	0.601	0.077	0.471	3e-16
UNIPROTKB|F1MS08	1201	SLC12A2 "Uncharacterized prote	0.475	0.056	0.514	4.4e-16
RGD|3685	1095	Slc12a1 "solute carrier family	0.475	0.062	0.544	1e-15
UNIPROTKB|G3V6U1	1095	Slc12a1 "Solute carrier family	0.475	0.062	0.544	1e-15
UNIPROTKB|E9PDW4	1099	SLC12A1 "Solute carrier family	0.475	0.061	0.544	1e-15
UNIPROTKB|E2RRI1	1101	SLC12A1 "Uncharacterized prote	0.643	0.083	0.416	1.3e-15
RGD|620809	369	Slc12a2 "solute carrier family	0.706	0.273	0.421	1.8e-15
MGI|MGI:101924	1205	Slc12a2 "solute carrier family	0.601	0.071	0.459	1.9e-15
UNIPROTKB|F1SN65	1131	SLC12A1 "Uncharacterized prote	0.496	0.062	0.521	3.6e-15

FB|FBgn0051547 CG31547 [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 51/80 (63%), Positives = 57/80 (71%)

Query:    19 DATGGAGSNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV 78
             +ATGG     H +KLGWIVGVLIPCLLNIWGVMLFLR++WVV E+GI  SL+II IS VV
Sbjct:   128 EATGG-----H-IKLGWIVGVLIPCLLNIWGVMLFLRLSWVVAESGILQSLIIITISAVV 181

Query:    79 CXXXXXXXXXXXXNGEVKGG 98
             C            NGEVKGG
Sbjct:   182 CVITTLSLSAISTNGEVKGG 201

GO:0006810 "transport" evidence=ISS

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

UNIPROTKB|F1NR57 SLC12A2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 41/87 (47%), Positives = 56/87 (64%)

Query:    13 DGTSIADATGGAGSNTHG-VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
             +GT   DA      ++ G VK GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+V+
Sbjct:   147 EGTPAGDAAATYTPDSKGIVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVVV 206

Query:    72 IGISYVVCXXXXXXXXXXXXNGEVKGG 98
             I ++ VV             NG V+GG
Sbjct:   207 IAMATVVTTITGLSTSAIATNGFVRGG 233

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IEA

GO:0051739 "ammonia transmembrane transporter activity" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0070634 "transepithelial ammonium transport" evidence=IEA

UNIPROTKB|F1MS08 SLC12A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 35/68 (51%), Positives = 48/68 (70%)

Query:    31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCXXXXXXXXXXX 90
             VK GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+++I ++ VV            
Sbjct:   275 VKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVIVIAMATVVTTITGLSTSAIA 334

Query:    91 XNGEVKGG 98
              NG V+GG
Sbjct:   335 TNGFVRGG 342

GO:0070634 "transepithelial ammonium transport" evidence=IEA

GO:0060763 "mammary duct terminal end bud growth" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0051739 "ammonia transmembrane transporter activity" evidence=IEA

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

RGD|3685 Slc12a1 "solute carrier family 12 (sodium/potassium/chloride transporters), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query:    31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCXXXXXXXXXXX 90
             VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++IIG+S VV            
Sbjct:   171 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVIIIGLSVVVTTLTGISMSAIC 230

Query:    91 XNGEVKGG 98
              NG V+GG
Sbjct:   231 TNGVVRGG 238

GO:0001822 "kidney development" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

GO:0007588 "excretion" evidence=IEA;ISO

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=IDA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA;ISO

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0035827 "rubidium ion transmembrane transporter activity" evidence=IDA

GO:0035829 "renal rubidium ion absorption" evidence=IDA

GO:0048878 "chemical homeostasis" evidence=IEA;ISO

GO:0070294 "renal sodium ion absorption" evidence=IC

UNIPROTKB|G3V6U1 Slc12a1 "Solute carrier family 12 member 1" [Rattus norvegicus (taxid:10116)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query:    31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCXXXXXXXXXXX 90
             VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++IIG+S VV            
Sbjct:   171 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVIIIGLSVVVTTLTGISMSAIC 230

Query:    91 XNGEVKGG 98
              NG V+GG
Sbjct:   231 TNGVVRGG 238

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PDW4 SLC12A1 "Solute carrier family 12 member 1" [Homo sapiens (taxid:9606)]

 Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query:    31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCXXXXXXXXXXX 90
             VK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++IIG+S VV            
Sbjct:   175 VKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVIIIGLSVVVTTLTGISMSAIC 234

Query:    91 XNGEVKGG 98
              NG V+GG
Sbjct:   235 TNGVVRGG 242

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0048878 "chemical homeostasis" evidence=IEA

UNIPROTKB|E2RRI1 SLC12A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 209 (78.6 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 40/96 (41%), Positives = 58/96 (60%)

Query:     7 AIQRAPDGTSIA---DATGGAGSNTHG-VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGE 62
             ++ R  +G  +    +A    G +  G VK GW+ GVL+ C+LNIWGVMLF+R++W+VGE
Sbjct:   148 SVDRVANGDGMPGDEEAENKEGEDKAGAVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGE 207

Query:    63 AGIGHSLVIIGISYVVCXXXXXXXXXXXXNGEVKGG 98
             AGIG  ++IIG++  V             NG V+GG
Sbjct:   208 AGIGLGVIIIGLAVTVTGITGLSTSAIATNGYVRGG 243

GO:0016021 "integral to membrane" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

RGD|620809 Slc12a2 "solute carrier family 12 (sodium/potassium/chloride transporters), member 2" [Rattus norvegicus (taxid:10116)]

 Score = 199 (75.1 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 43/102 (42%), Positives = 59/102 (57%)

Query:    13 DGTSIADATGGAGSNTHGV-KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
             + T   DA     + + GV K GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+++
Sbjct:    86 ESTPTRDAVVTYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLV 145

Query:    72 IGISYVVCXXXXXXXXXXXXNGEVKGGECMSYSQKSQIYINR 113
             I ++ VV             NG + GG   S   KS   I R
Sbjct:   146 IPMATVVTSLPGLSTSPISTNGILTGGGTFSLISKSGAQIWR 187

GO:0005886 "plasma membrane" evidence=IDA

GO:0006813 "potassium ion transport" evidence=IMP

GO:0006814 "sodium ion transport" evidence=IMP

GO:0006821 "chloride transport" evidence=IMP

GO:0006972 "hyperosmotic response" evidence=IMP

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IEP

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=IMP

GO:0015377 "cation:chloride symporter activity" evidence=TAS

GO:0015696 "ammonium transport" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=ISO

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0030321 "transepithelial chloride transport" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0045795 "positive regulation of cell volume" evidence=IMP

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=ISO

GO:0051739 "ammonia transmembrane transporter activity" evidence=ISO

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=ISO

GO:0070634 "transepithelial ammonium transport" evidence=ISO

MGI|MGI:101924 Slc12a2 "solute carrier family 12, member 2" [Mus musculus (taxid:10090)]

 Score = 208 (78.3 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 40/87 (45%), Positives = 55/87 (63%)

Query:    13 DGTSIADATGGAGSNTHGV-KLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVI 71
             + T   DA     + + GV K GWI GVL+ C+LNIWGVMLF+R++W+VG+AGIG S+V+
Sbjct:   257 ESTPTRDAVVAYTAESKGVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVVV 316

Query:    72 IGISYVVCXXXXXXXXXXXXNGEVKGG 98
             I ++ VV             NG V+GG
Sbjct:   317 IAMATVVTTITGLSTSAIATNGFVRGG 343

GO:0005215 "transporter activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=ISO

GO:0006814 "sodium ion transport" evidence=ISO

GO:0006821 "chloride transport" evidence=ISO

GO:0006972 "hyperosmotic response" evidence=ISO

GO:0008511 "sodium:potassium:chloride symporter activity" evidence=ISO

GO:0015293 "symporter activity" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

GO:0015696 "ammonium transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0030321 "transepithelial chloride transport" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=IMP

GO:0045795 "positive regulation of cell volume" evidence=ISO

GO:0050910 "detection of mechanical stimulus involved in sensory perception of sound" evidence=IMP

GO:0051739 "ammonia transmembrane transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IMP

GO:0060763 "mammary duct terminal end bud growth" evidence=IMP

GO:0070634 "transepithelial ammonium transport" evidence=ISO

UNIPROTKB|F1SN65 SLC12A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 3.6e-15, P = 3.6e-15
 Identities = 37/71 (52%), Positives = 49/71 (69%)

Query:    28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCXXXXXXXX 87
             T GVK GW+ GVL+ C+LNIWGVMLF+R++W+VGEAGIG  ++II +S +V         
Sbjct:   171 TGGVKFGWVKGVLVRCMLNIWGVMLFIRLSWIVGEAGIGLGVLIILLSTMVTSITGLSTS 230

Query:    88 XXXXNGEVKGG 98
                 NG V+GG
Sbjct:   231 AIATNGFVRGG 241

GO:0048878 "chemical homeostasis" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0001822 "kidney development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015377 "cation:chloride symporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55012	S12A2_MOUSE	No assigned EC number	0.5517	0.6013	0.0713	yes	N/A
O60146	YNSG_SCHPO	No assigned EC number	0.5072	0.4825	0.0657	yes	N/A
P55011	S12A2_HUMAN	No assigned EC number	0.5402	0.6013	0.0709	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
TIGR00930	953	TIGR00930, 2a30, K-Cl cotransporter	4e-35
pfam00324	473	pfam00324, AA_permease, Amino acid permease	2e-08

>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter

 Score =  127 bits (322), Expect = 4e-35
 Identities = 50/94 (53%), Positives = 62/94 (65%), Gaps = 1/94 (1%)

Query: 6   RAIQRAPDGTSIADATGGAG-SNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAG 64
              Q   +     DA G         VK GW++GVL+PCLLNIWGV+LFLR++W+VG+AG
Sbjct: 50  NNGQGMKEHEEAEDAEGTKEKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAG 109

Query: 65  IGHSLVIIGISYVVCIITTLSLSAITTNGEVKGG 98
           IG SL+II +   V  IT LS+SAI TNG VKGG
Sbjct: 110 IGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG 143

[Transport and binding proteins, Other]. Length = 953

>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 24/61 (39%), Positives = 35/61 (57%)

Query: 38 GVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKG 97
           VL+  L  + G  LF+    V+G+AG   +L+   I+ VV  +T LSL  ++TNG V G
Sbjct: 1  HVLMIALGGVIGTGLFVGSGSVLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVAG 60

Query: 98 G 98
          G
Sbjct: 61 G 61

Length = 473

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
KOG2082|consensus	1075		99.95
KOG2083|consensus	643		99.95
KOG1288|consensus	945		99.94
TIGR00930	953	2a30 K-Cl cotransporter.	99.92
KOG2082|consensus	1075		98.82
KOG2083|consensus	643		98.44
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.66
KOG1288|consensus	945		97.62
TIGR00930	953	2a30 K-Cl cotransporter.	96.88
TIGR00911	501	2A0308 L-type amino acid transporter.	94.13
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	93.38
COG0531	466	PotE Amino acid transporters [Amino acid transport	91.78
PRK11387	471	S-methylmethionine transporter; Provisional	91.3
TIGR00909	429	2A0306 amino acid transporter.	90.32
TIGR00906	557	2A0303 cationic amino acid transport permease.	88.51
PRK10644	445	arginine:agmatin antiporter; Provisional	87.29
PRK10580	457	proY putative proline-specific permease; Provision	86.42
PF08403	74	AA_permease_N: Amino acid permease N-terminal; Int	85.65
PRK10836	489	lysine transporter; Provisional	85.1
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	85.02
PRK10249	458	phenylalanine transporter; Provisional	84.48
PRK10655	438	potE putrescine transporter; Provisional	83.67
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	82.37
PRK10238	456	aromatic amino acid transporter; Provisional	81.67
PRK11357	445	frlA putative fructoselysine transporter; Provisio	81.13
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	80.8

>KOG2082|consensus

Probab=99.95  E-value=8.8e-29  Score=231.07  Aligned_cols=82  Identities=39%  Similarity=0.739  Sum_probs=79.7

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      +..++||+.|||+||++|||||+||+|+.||||.||+.++++++++|+++|++|++|||||||||.|++||+||||+|+.
T Consensus       110 ~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL  189 (1075)
T KOG2082|consen  110 KAARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL  189 (1075)
T ss_pred             CccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hh
Q psy9036         109 IY  110 (143)
Q Consensus       109 i~  110 (143)
                      +-
T Consensus       190 GP  191 (1075)
T KOG2082|consen  190 GP  191 (1075)
T ss_pred             Cc
Confidence            75

>KOG2083|consensus

Probab=99.95  E-value=2e-28  Score=223.37  Aligned_cols=85  Identities=47%  Similarity=0.812  Sum_probs=82.3

Q ss_pred             CCCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceech
Q psy9036          26 SNTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQ  105 (143)
Q Consensus        26 ~~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~  105 (143)
                      +.+++.|||||+|||++|++||||||+|||+||||||||+..+.++++++.+++++|++|.|||+|||++|+||+||||+
T Consensus        23 ~~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis  102 (643)
T KOG2083|consen   23 LTKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLIS  102 (643)
T ss_pred             ccCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhh
Q psy9036         106 KSQIY  110 (143)
Q Consensus       106 ~swi~  110 (143)
                      ++.+-
T Consensus       103 ~slg~  107 (643)
T KOG2083|consen  103 RSLGP  107 (643)
T ss_pred             ecccc
Confidence            99854

>KOG1288|consensus

Probab=99.94  E-value=1.2e-27  Score=222.02  Aligned_cols=103  Identities=32%  Similarity=0.573  Sum_probs=88.5

Q ss_pred             ceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhhh
Q psy9036          31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIY  110 (143)
Q Consensus        31 ~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi~  110 (143)
                      .|+|||+|||+|+.||||++++|||+||||||||++.++++++++|.|.++|++|+|||+|||.|++||+||||+|+.+.
T Consensus        65 ~kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp  144 (945)
T KOG1288|consen   65 AKLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP  144 (945)
T ss_pred             ccccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence            39999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             h---hhhhhhhhhhhhhhhccccceee
Q psy9036         111 I---NRGDVLSCVVVCIITTLSLSAIT  134 (143)
Q Consensus       111 g---~~giv~~~~~v~~~t~~s~sai~  134 (143)
                      -   --|.+|- +.-.+.++|+.|++-
T Consensus       145 EfGGSIGllFf-~anV~~~am~isG~v  170 (945)
T KOG1288|consen  145 EFGGSIGLLFF-VANVFNCAMNISGFV  170 (945)
T ss_pred             ccCCeeeehhh-HHHHhcchhhhhhhh
Confidence            3   2232221 223455666666543

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.92  E-value=6e-26  Score=214.76  Aligned_cols=83  Identities=57%  Similarity=0.984  Sum_probs=79.9

Q ss_pred             CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036          28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS  107 (143)
Q Consensus        28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s  107 (143)
                      ++++|||||.|||+||++||||+++|+|++||+|+||++.++++++++++++++|++|+|||+|||.+++||+||+++|+
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra  152 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS  152 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhh
Q psy9036         108 QIY  110 (143)
Q Consensus       108 wi~  110 (143)
                      .+-
T Consensus       153 lGp  155 (953)
T TIGR00930       153 LGP  155 (953)
T ss_pred             hCc
Confidence            765

>KOG2082|consensus

Probab=98.82  E-value=5.6e-10  Score=106.10  Aligned_cols=44  Identities=30%  Similarity=0.472  Sum_probs=41.0

Q ss_pred             ccceechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036          99 ECMSYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG  142 (143)
Q Consensus        99 G~Yyli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G  142 (143)
                      |.-+.||..|+||.+|+      |++||+||++|++|+|||||||.||+|
T Consensus       130 GVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG  179 (1075)
T KOG2082|consen  130 GVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG  179 (1075)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence            45578899999999996      999999999999999999999999998

>KOG2083|consensus

Probab=98.44  E-value=3.7e-08  Score=91.39  Aligned_cols=44  Identities=34%  Similarity=0.357  Sum_probs=41.4

Q ss_pred             ccceechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036          99 ECMSYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG  142 (143)
Q Consensus        99 G~Yyli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G  142 (143)
                      |....+|.+|++||+||      ++++..||+||++|.+||+|||+||+|
T Consensus        46 gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G   95 (643)
T KOG2083|consen   46 GVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG   95 (643)
T ss_pred             HHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC
Confidence            77788999999999996      788899999999999999999999998

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.66  E-value=4.8e-05  Score=65.94  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=67.0

Q ss_pred             eeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhhh
Q psy9036          38 GVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQIY  110 (143)
Q Consensus        38 GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi~  110 (143)
                      +|+.+++-++.|.-+|++.+++++++|.....+..+++.++.+++..|+++++++.. ..||.|+.++|...-
T Consensus         1 hv~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~Gg~y~y~~~~lg~   72 (478)
T PF00324_consen    1 HVFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAGGFYAYASRGLGP   72 (478)
T ss_pred             CEEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-cccchhhhhhhccCC
Confidence            578899999999999999999999999999999999999999999999999999977 899999999986554

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1288|consensus

Probab=97.62  E-value=1.7e-05  Score=75.62  Aligned_cols=40  Identities=35%  Similarity=0.522  Sum_probs=35.5

Q ss_pred             echhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036         103 YSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG  142 (143)
Q Consensus       103 li~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G  142 (143)
                      .+|-.|++||+|+      .+++|.+.+.|++|.|||+|||.|+||
T Consensus        87 FLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GG  132 (945)
T KOG1288|consen   87 FLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGG  132 (945)
T ss_pred             HHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecC
Confidence            3466688888885      899999999999999999999999998

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.88  E-value=0.00027  Score=68.34  Aligned_cols=41  Identities=49%  Similarity=0.605  Sum_probs=37.7

Q ss_pred             eechhhhhhhhhhh------hhhhhhhhhhhccccceeeecceecCC
Q psy9036         102 SYSQKSQIYINRGD------VLSCVVVCIITTLSLSAITTNGEVKGG  142 (143)
Q Consensus       102 yli~~swi~g~~gi------v~~~~~v~~~t~~s~sai~tng~v~~G  142 (143)
                      +.+|.+|+++++|+      +++|++++++|++|.|+++|||.+++|
T Consensus        97 iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG  143 (953)
T TIGR00930        97 LFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG  143 (953)
T ss_pred             eeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            66799999999995      788899999999999999999999987

>TIGR00911 2A0308 L-type amino acid transporter

Probab=94.13  E-value=0.025  Score=49.70  Aligned_cols=96  Identities=20%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             CCCCChhhhhCCCCC-CCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhh-HHHHHHHHHHHHHHHHHHHHh
Q psy9036          12 PDGTSIADATGGAGS-NTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHS-LVIIGISYVVCIITTLSLSAI   89 (143)
Q Consensus        12 ~~Rpsl~~l~~~~~~-~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~-l~ii~ls~~it~lT~lSlsAI   89 (143)
                      ..|.+++|+++++.+ .+-++|+|.++.+.+-. -+++|.-+|.-.+.+..++|-... +...+++.++.+..+++...+
T Consensus        22 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~v-g~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aEL  100 (501)
T TIGR00911        22 GRKKSVSASTVDGGEAVALKKEITLLSGVGIIV-GTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAEL  100 (501)
T ss_pred             cccccccccccccccccccCccccHhHhhHhhe-eceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778888887643 34477899887765532 345666667777778888874332 333456667888999999999


Q ss_pred             HhcCcccCCccceechhhhh
Q psy9036          90 TTNGEVKGGECMSYSQKSQI  109 (143)
Q Consensus        90 aTNg~v~~GG~Yyli~~swi  109 (143)
                      ++- ..+.||.|...++.++
T Consensus       101 as~-~P~sGG~y~~~~~~~g  119 (501)
T TIGR00911       101 GTT-IPKSGGEYNYILEVFG  119 (501)
T ss_pred             Hhh-cCCCCchhhhHHhHhC
Confidence            987 4578999999988654

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=93.38  E-value=0.15  Score=44.54  Aligned_cols=80  Identities=16%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI  109 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi  109 (143)
                      ++|+|.++.+++ .+-+++|.-+|.--+.+..++|-...+.-.+++.+..++.+++...+++.-.-++||.|...++.++
T Consensus         6 ~~~l~~~~~~~l-~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G   84 (473)
T TIGR00905         6 SKKLGLFALTAL-VIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG   84 (473)
T ss_pred             CCCccHHHHHHH-HHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence            568888777654 4566888878887778777887666666677777888899999999999844448999999988765


Q ss_pred             h
Q psy9036         110 Y  110 (143)
Q Consensus       110 ~  110 (143)
                      -
T Consensus        85 ~   85 (473)
T TIGR00905        85 P   85 (473)
T ss_pred             c
Confidence            3

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=91.78  E-value=0.34  Score=40.83  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             CCCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechh
Q psy9036          27 NTHGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQK  106 (143)
Q Consensus        27 ~~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~  106 (143)
                      +++++|+|+++.++.-..-++.|.-.|.=.+-+...+  .......+++.++..+.+++...+++ ..-+.||.|...++
T Consensus         8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~GG~y~~~~~   84 (466)
T COG0531           8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PAAILAWLIAGIIILFLALSYAELSS-AIPSAGGAYAYAKR   84 (466)
T ss_pred             hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCeeeehhh
Confidence            3456799999988888888888844444444444443  12222246666666667999999999 68888999999998


Q ss_pred             hhh
Q psy9036         107 SQI  109 (143)
Q Consensus       107 swi  109 (143)
                      +.+
T Consensus        85 ~~g   87 (466)
T COG0531          85 ALG   87 (466)
T ss_pred             hcC
Confidence            765

>PRK11387 S-methylmethionine transporter; Provisional

Probab=91.30  E-value=0.38  Score=42.05  Aligned_cols=77  Identities=16%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      ++++|.++.+.+ .+=++.|.=+|.-.|-+...+|-...++..+++.++.++..+|+..+++. ..+.||.|...++..
T Consensus        13 ~r~L~~~~~~~l-~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aGG~y~y~~~~~   89 (471)
T PRK11387         13 KRTMKVRHLVML-SLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETGAFHVYAARYL   89 (471)
T ss_pred             hhcCcHHHHHHH-HHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHhc
Confidence            457887766544 44577888899999999999996556777888888999999999999997 456789998877653

>TIGR00909 2A0306 amino acid transporter

Probab=90.32  E-value=0.41  Score=40.72  Aligned_cols=76  Identities=13%  Similarity=0.186  Sum_probs=57.5

Q ss_pred             ceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036          31 VKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI  109 (143)
Q Consensus        31 ~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi  109 (143)
                      +|+|.++.+.+-. -+++|.-.|...+.+.+.+|-. .....+++.+..+..+++...+++. ..+.||.|...++.++
T Consensus         3 r~l~~~~~~~~~i-~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G   78 (429)
T TIGR00909         3 RELGLFDLTMLGI-GAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAM-LPVAGSPYTYAYEAMG   78 (429)
T ss_pred             ccccHHHHHHHHH-hhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcceeeHHHHhC
Confidence            5778877765543 4567877888888888888864 4455666777788899999999987 4467999999888654

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=88.51  E-value=0.58  Score=42.56  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=58.6

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHh-hhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVV-GEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS  107 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiV-G~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s  107 (143)
                      -++++|.++-+.+- +-.+.|.-+|.-.|.+. .++|-. ..+-.+++.+..++.+++.+.+++. ..++||.|...++.
T Consensus        26 L~r~L~~~~l~~l~-ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sGg~Y~y~~~~  102 (557)
T TIGR00906        26 MKRCLTTWDLMALG-IGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAGSAYLYSYVT  102 (557)
T ss_pred             hhhcCCHHHHHHHH-hhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcceeeHHHH
Confidence            35689998776553 34467777888888876 457765 5555677888899999999999997 55789999998875


Q ss_pred             h
Q psy9036         108 Q  108 (143)
Q Consensus       108 w  108 (143)
                      .
T Consensus       103 ~  103 (557)
T TIGR00906       103 V  103 (557)
T ss_pred             h
Confidence            4

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=87.29  E-value=0.9  Score=39.29  Aligned_cols=77  Identities=17%  Similarity=0.217  Sum_probs=55.9

Q ss_pred             CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036          28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS  107 (143)
Q Consensus        28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s  107 (143)
                      ++++|+|.++.+.+ .+=+++|.=+|.=-+.+....|  ..+.-.+++.+..+..+++..++++. ..+.||.|...++.
T Consensus         5 ~~~~~lg~~~~~~l-~vg~~iGsGif~~~~~~a~~g~--~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG~y~~~~~~   80 (445)
T PRK10644          5 ADAHKVGLIPVTLM-VAGNIMGSGVFLLPANLASTGG--IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGGSYAYARRC   80 (445)
T ss_pred             ccCCCcCHHHHHHH-HHhhHhhhHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHHH
Confidence            35679999988877 6677888866654566554432  34455566677788999999999987 55789999988875


Q ss_pred             h
Q psy9036         108 Q  108 (143)
Q Consensus       108 w  108 (143)
                      +
T Consensus        81 ~   81 (445)
T PRK10644         81 F   81 (445)
T ss_pred             c
Confidence            4

>PRK10580 proY putative proline-specific permease; Provisional

Probab=86.42  E-value=1.5  Score=38.23  Aligned_cols=77  Identities=19%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI  109 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi  109 (143)
                      +++++.++- +.=.+=++.|.=+|.-.+.....+|-. .++-.+++.++.++.++++..+++. ....||.|...++.++
T Consensus         8 ~r~L~~~~~-~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~Gg~y~y~~~~~G   84 (457)
T PRK10580          8 KRGLSTRHI-RFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVH-NPAASSFSRYAQENLG   84 (457)
T ss_pred             cccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHcC
Confidence            346777654 444566778888999999999999964 5777888888999999999999997 5567999998887544

>PF08403 AA_permease_N: Amino acid permease N-terminal; InterPro: IPR013612 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=85.65  E-value=0.42  Score=33.90  Aligned_cols=17  Identities=6%  Similarity=0.071  Sum_probs=13.4

Q ss_pred             CCCCCCChhhhhCCCCC
Q psy9036          10 RAPDGTSIADATGGAGS   26 (143)
Q Consensus        10 ~~~~Rpsl~~l~~~~~~   26 (143)
                      .+..||||+|||+..++
T Consensus        36 ~k~~RPSL~~Lh~~~~~   52 (74)
T PF08403_consen   36 QKKSRPSLDELHSQLEK   52 (74)
T ss_pred             cccCCCCHHHHHHHhhc
Confidence            44589999999997543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins appear to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found to the N terminus of the amino acid permease domain (IPR004841 from INTERPRO) in metazoan Na-K-Cl cotransporters.

>PRK10836 lysine transporter; Provisional

Probab=85.10  E-value=1.3  Score=39.05  Aligned_cols=73  Identities=18%  Similarity=0.157  Sum_probs=59.7

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCcccee
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSY  103 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyl  103 (143)
                      -++++|.++.+.+ .+=+++|.=+|.-.|-+..++|-...+.-.+++.++.++.++|...+++. ..+.||.|..
T Consensus        13 l~r~L~~~~~~~l-~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~sGg~y~y   85 (489)
T PRK10836         13 LRRELKARHLTMI-AIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPVSGSFATY   85 (489)
T ss_pred             ccccCcHHHHHHH-HHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHH
Confidence            3567888776543 45568899999999999999997667788888889999999999999999 4568999853

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=85.02  E-value=0.78  Score=39.68  Aligned_cols=78  Identities=13%  Similarity=0.151  Sum_probs=60.5

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      .++++++++.+++ .+-+++|.=+|.-.+-...++|- .+++..+++.++.+..+++++.+++. ..+.||.|...++.+
T Consensus        10 ~~~~L~~~~~~~i-~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~~Gg~~~~~~~~~   86 (452)
T TIGR01773        10 LPNGLKTRHVTML-SIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPDTGSFSTYADDAI   86 (452)
T ss_pred             HhCcCcHHHHHHH-HHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHh
Confidence            4557887766444 45567888899999999999996 46667778888889999999999986 445789998877754


Q ss_pred             h
Q psy9036         109 I  109 (143)
Q Consensus       109 i  109 (143)
                      +
T Consensus        87 g   87 (452)
T TIGR01773        87 G   87 (452)
T ss_pred             C
Confidence            4

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10249 phenylalanine transporter; Provisional

Probab=84.48  E-value=1.8  Score=37.85  Aligned_cols=77  Identities=19%  Similarity=0.132  Sum_probs=60.4

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQI  109 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~swi  109 (143)
                      +++++.++-+. =.+=+++|.=+|+-.|-...++|- .+++..+++.++.++..+|+.++++. ....||.|...++.++
T Consensus        20 ~r~l~~~~~~~-i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~Gg~~~y~~~~~g   96 (458)
T PRK10249         20 HRGLHNRHIQL-IALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSGSFAHFAYKYWG   96 (458)
T ss_pred             hccCcHhHhhh-hhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhC
Confidence            45677755433 344557899999999999999997 47777888889999999999999998 5557899988887543

>PRK10655 potE putrescine transporter; Provisional

Probab=83.67  E-value=1.4  Score=37.78  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=56.7

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      +++|+|.++.+.+ .+=+|+|.-.|.=-+. +.++|- .+++..+++.++.++.+++...+++. ..+.||.|...++.+
T Consensus         4 ~~~~l~~~~~~~l-~vg~~iGsGif~~p~~-~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~GG~y~y~~~~~   79 (438)
T PRK10655          4 KSNKMGVVQLTIL-TAVNMMGSGIIMLPTK-LAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSGGMGGYAEYAF   79 (438)
T ss_pred             ccCcccHHHHHHH-HHHhhhhhHHHHhHHH-HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCchHHHHHHHc
Confidence            4568888776655 3467777766553444 456675 56677778888889999999999876 667899999998865


Q ss_pred             hh
Q psy9036         109 IY  110 (143)
Q Consensus       109 i~  110 (143)
                      +-
T Consensus        80 G~   81 (438)
T PRK10655         80 GK   81 (438)
T ss_pred             Cc
Confidence            53

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=82.37  E-value=2.9  Score=36.65  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=55.6

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS  107 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s  107 (143)
                      +++||.++=+.+.--.-..+.-+|.=++-...++|- ..+.-.+++.+..++.++|++.+++- ....||.|+..++.
T Consensus        12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aGG~Y~~~~~~   87 (475)
T TIGR03428        12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISGAIYQWSRRM   87 (475)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCHHHHHHHH
Confidence            347888776555544322345667777888888887 45666677788899999999999997 55789999888764

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=81.67  E-value=1.3  Score=38.69  Aligned_cols=75  Identities=21%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKS  107 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~s  107 (143)
                      +++++.++.+++ .+=+++|.=+|+-.|-++.++|- ..+.-.+++.++.++.++|+..+++.- ..+||.|+..++.
T Consensus        11 ~r~L~~~~~~~i-~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aGg~y~~~~~~   85 (456)
T PRK10238         11 KRGLKNRHIQLI-ALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-PVAGSFSHFAYKY   85 (456)
T ss_pred             hccCcHHHHHHH-HhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCHHHHHHHH
Confidence            457777777554 45567888899999999999997 566777888889999999999999984 4578888776664

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=81.13  E-value=1.6  Score=37.67  Aligned_cols=78  Identities=18%  Similarity=0.185  Sum_probs=57.5

Q ss_pred             cceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccch-hhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          30 GVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIG-HSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        30 ~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~-~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      ++++|.++.+.+-.-. +.|.=+|.-.+.+..++|-. ..++..+++.+..+..+++.+.+++- ..+.||.|...++.+
T Consensus         7 ~r~l~~~~~~~l~vg~-~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~-~P~~GG~y~y~~~~~   84 (445)
T PRK11357          7 QRKLGFWAVLAIAVGT-TVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTA-YPENGADYVYLKNAG   84 (445)
T ss_pred             cccccHHHHHHHHHHh-heechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCceeeHHHhc
Confidence            4588888776655432 34555677788887777733 35556677888899999999999997 456799999998775


Q ss_pred             h
Q psy9036         109 I  109 (143)
Q Consensus       109 i  109 (143)
                      .
T Consensus        85 g   85 (445)
T PRK11357         85 S   85 (445)
T ss_pred             C
Confidence            4

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=80.80  E-value=2.3  Score=37.29  Aligned_cols=77  Identities=12%  Similarity=0.016  Sum_probs=58.7

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      -++++|.++.+.+- +=.++|.=+|+-.|-...++|- ..+...+++.++.+...+|++++++.+.. .|+.|...++.+
T Consensus        18 l~r~l~~~~~~~i~-vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~~   94 (469)
T PRK11049         18 LRRNLTNRHIQLIA-IGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDLL   94 (469)
T ss_pred             hhccCcHHHHHHHH-HhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHh
Confidence            35578888776554 6779999999999999999997 45555667777889999999999997555 445666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	96.4
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	95.77
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	90.95

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=96.40  E-value=0.0017  Score=53.15  Aligned_cols=78  Identities=13%  Similarity=0.073  Sum_probs=65.1

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      +++|+|+++.+++ .+-+++|.-+|...+...+++|- .+.+..+++.++.++++++.+.+++.-. ++||.|...++..
T Consensus         4 ~~r~l~~~~~~~l-~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-~~Gg~y~~~~~~~   80 (444)
T 3gia_A            4 KNKKLSLWEAVSM-AVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-SNAGPIAFIHKAI   80 (444)
T ss_dssp             CCCCBCHHHHHHH-HHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-CTTTHHHHHHHHH
T ss_pred             cCCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHhHHHHh
Confidence            4568999888877 45567898899999999999997 6777888888999999999999999844 4799999988765


Q ss_pred             h
Q psy9036         109 I  109 (143)
Q Consensus       109 i  109 (143)
                      +
T Consensus        81 G   81 (444)
T 3gia_A           81 G   81 (444)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=95.77  E-value=0.0033  Score=51.26  Aligned_cols=77  Identities=16%  Similarity=0.135  Sum_probs=60.9

Q ss_pred             CcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHhHhcCcccCCccceechhhh
Q psy9036          29 HGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVVCIITTLSLSAITTNGEVKGGECMSYSQKSQ  108 (143)
Q Consensus        29 ~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~it~lT~lSlsAIaTNg~v~~GG~Yyli~~sw  108 (143)
                      +++|+|+++.+++ .+-+++|.-+|.--+. +.++|- .++...+++.++.++++++...+++.-. +.||.|...++.+
T Consensus         6 ~~r~l~~~~~~~l-~ig~~iG~Gif~~~~~-~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p-~~Gg~y~~~~~~~   81 (445)
T 3l1l_A            6 DAHKVGLIPVTLM-VSGAIMGSGVFLLPAN-LASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDP-SPGGSYAYARRCF   81 (445)
T ss_dssp             -CCCBCHHHHHHH-HHHHHCSSHHHHHHHH-HHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CTTTHHHHHHHHS
T ss_pred             CCCcccHHHHHHH-HHHhHHhhhHHhhHHH-HHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCchhhHHhHc
Confidence            4568999999988 6777888767776555 667886 4777788888999999999999999844 4789999988765


Q ss_pred             h
Q psy9036         109 I  109 (143)
Q Consensus       109 i  109 (143)
                      +
T Consensus        82 G   82 (445)
T 3l1l_A           82 G   82 (445)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=90.95  E-value=0.038  Score=45.92  Aligned_cols=73  Identities=12%  Similarity=0.159  Sum_probs=39.0

Q ss_pred             CCcceeeeEEeeehhhhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHH-HHHHHHHHHHhHh--cCcccCCccceec
Q psy9036          28 THGVKLGWIVGVLIPCLLNIWGVMLFLRMAWVVGEAGIGHSLVIIGISYVV-CIITTLSLSAITT--NGEVKGGECMSYS  104 (143)
Q Consensus        28 ~~~~k~Gtf~GVfiP~~lnI~GVilFLRlgwiVG~aGl~~~l~ii~ls~~i-t~lT~lSlsAIaT--Ng~v~~GG~Yyli  104 (143)
                      +.++|+|+++.+.+-.- +++|+....    ..+++|....+ ..+++..+ .+.+++|++.+++  .-.  +||.|+..
T Consensus         8 ~~~r~l~~~~~~~l~~~-~~ig~~~~~----~~~~~G~~~~~-~~~i~~~~~~l~~al~~ael~s~~~~P--~GG~y~~~   79 (511)
T 4djk_A            8 GKAKQLTLLGFFAITAS-MVMAVYEYP----TFATSGFSLVF-FLLLGGILWFIPVGLCAAEMATVDGWE--EGGVFAWV   79 (511)
T ss_dssp             ----CCCHHHHHHHTGG-GGCCGGGHH----HHHTTTTHHHH-HHHHHHHHTHHHHHHHHHHHHTTSCC-----CHHHHH
T ss_pred             ccCccccHHHHHHHHHH-HHHhhchhH----HHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHcccccCC--CCChhhhH
Confidence            34568998887766332 233421111    13456643322 33333333 3459999999999  544  99999998


Q ss_pred             hhhh
Q psy9036         105 QKSQ  108 (143)
Q Consensus       105 ~~sw  108 (143)
                      ++..
T Consensus        80 ~~~~   83 (511)
T 4djk_A           80 SNTL   83 (511)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00